BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016856
         (381 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O31544|YFJP_BACSU Putative DNA-3-methyladenine glycosylase YfjP OS=Bacillus subtilis
           (strain 168) GN=yfjP PE=3 SV=1
          Length = 287

 Score = 40.8 bits (94), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 17/127 (13%)

Query: 205 NLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDES 264
           N  + C  ++ + +  SF     E  +H   E         +D +  +P P  +A LD  
Sbjct: 120 NCMMKC--IIHQQLNLSFAYTLTERFVHAFGE--------QKDGVWCYPKPETIAELDYQ 169

Query: 265 FLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPF 324
            L        +A   +  +R I +G + L EL  M +E        + ++L +I G GP+
Sbjct: 170 DLRDLQFSMRKAEYTIDTSRMIAEGTLSLSELPHMADE-------DIMKKLIKIRGIGPW 222

Query: 325 TRNNVLV 331
           T  NVL+
Sbjct: 223 TVQNVLM 229


>sp|Q92383|MAG1_SCHPO DNA-3-methyladenine glycosylase 1 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=mag1 PE=1 SV=1
          Length = 228

 Score = 40.0 bits (92), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 11/102 (10%)

Query: 250 GNFPSPRELANLDESFLAKRCNLGYRAGRILK-LARGIVDGQIQLR-ELEDMCNEASLTA 307
           G FP+P E+ ++D   + + C    R    LK +A   + G I  + E E + NE     
Sbjct: 82  GQFPTPEEIRDMDFEIM-RACGFSARKIDSLKSIAEATISGLIPTKEEAERLSNE----- 135

Query: 308 YVKLAEQLSQINGFGPFTRNNVLV-CIGFYHVIPTDSETIRH 348
             +L E+L+QI G G +T   +L+  +    V+P D  +IR+
Sbjct: 136 --ELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIRN 175


>sp|Q73LF4|DXS_TREDE 1-deoxy-D-xylulose-5-phosphate synthase OS=Treponema denticola
           (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=dxs PE=3
           SV=1
          Length = 653

 Score = 36.6 bits (83), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 322 GPFTRNNVLVCIGFYHVIPTDSETIRHLKQV--HARNCTSKTVQMIAESIYGKYAPF 376
           G F +NN+ V  GF +V P +   +R L++V  + +   S  V M+ E+I GK  P 
Sbjct: 235 GIFYKNNIFVDFGFEYVGPINGHNMRELEKVLKNVKKLNSPVV-MLVETIKGKGYPL 290


>sp|P53397|OGG1_YEAST N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=OGG1 PE=1 SV=1
          Length = 376

 Score = 36.2 bits (82), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 18/122 (14%)

Query: 235 NELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLR 294
           N ++T D  +      +FP+  EL +       +    GYRA  I++ AR +V+ + +  
Sbjct: 153 NLITTIDGVAYH----SFPTSEELTSRATEAKLRELGFGYRAKYIIETARKLVNDKAEAN 208

Query: 295 ------ELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYH---VIPTDSET 345
                  L+ +C +A    Y  + E L   NG GP   +   VC+   H   ++P D   
Sbjct: 209 ITSDTTYLQSICKDAQ---YEDVREHLMSYNGVGPKVAD--CVCLMGLHMDGIVPVDVHV 263

Query: 346 IR 347
            R
Sbjct: 264 SR 265


>sp|Q8K4G1|LTBP4_MOUSE Latent-transforming growth factor beta-binding protein 4 OS=Mus
            musculus GN=Ltbp4 PE=2 SV=2
          Length = 1666

 Score = 33.1 bits (74), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 20/88 (22%)

Query: 220  PSFPQNDIESDLHGLNELSTTDPPS--------ARDRIGNFPSPRE----------LANL 261
            P F   D E D     E  T DPPS        +RD  G+FP P E          L+  
Sbjct: 1511 PPFDMPDFEDDGGPYGESETPDPPSRGTGWPYRSRDTRGSFPEPEESSERGSYTGALSEP 1570

Query: 262  DESFLAKRCNL--GYRAGRILKLARGIV 287
             E   A+ C +  G   GR +++  G  
Sbjct: 1571 YEGLEAEECGILDGCPHGRCVRVPEGFT 1598


>sp|Q9Y6X6|MYO16_HUMAN Unconventional myosin-XVI OS=Homo sapiens GN=MYO16 PE=1 SV=3
          Length = 1858

 Score = 32.0 bits (71), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 6/91 (6%)

Query: 18   LHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKR 77
            + LSNSL +         ++   P++D +S     R S SG+  S  Q  +D+   QV  
Sbjct: 1732 IQLSNSLSSAITAENGNSISNGLPEEDGYS-----RLSISGTGTSTFQRHRDSHTTQVIH 1786

Query: 78   MLRLSEADERNVRDFKRIVRQVAQEEGEESQ 108
             LRLSE +   +++     R++  EEG++ Q
Sbjct: 1787 QLRLSENESVALQELLDWRRKLC-EEGQDWQ 1816


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,209,218
Number of Sequences: 539616
Number of extensions: 5174528
Number of successful extensions: 14858
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 14853
Number of HSP's gapped (non-prelim): 19
length of query: 381
length of database: 191,569,459
effective HSP length: 119
effective length of query: 262
effective length of database: 127,355,155
effective search space: 33367050610
effective search space used: 33367050610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)