Query 016856
Match_columns 381
No_of_seqs 267 out of 1439
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 04:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i0w_A 8-oxoguanine-DNA-glycos 100.0 2.7E-42 9.4E-47 334.9 20.3 229 35-381 51-283 (290)
2 2jhn_A ALKA, 3-methyladenine D 100.0 2.1E-40 7.2E-45 322.0 17.9 242 8-381 29-283 (295)
3 2xhi_A N-glycosylase/DNA lyase 100.0 2.5E-39 8.6E-44 322.8 19.7 241 34-381 77-335 (360)
4 1mpg_A ALKA, 3-methyladenine D 100.0 8.5E-39 2.9E-43 308.5 22.0 237 11-381 32-273 (282)
5 4b21_A Probable DNA-3-methylad 100.0 7.4E-37 2.5E-41 288.5 15.3 195 77-381 18-223 (232)
6 3s6i_A DNA-3-methyladenine gly 100.0 1.1E-32 3.9E-37 259.1 14.9 164 114-381 38-212 (228)
7 2yg9_A DNA-3-methyladenine gly 100.0 1.2E-31 4.2E-36 251.5 14.7 183 80-380 23-212 (225)
8 2h56_A DNA-3-methyladenine gly 100.0 1.1E-30 3.8E-35 246.1 16.1 162 114-380 42-210 (233)
9 1pu6_A 3-methyladenine DNA gly 99.9 2E-23 7E-28 194.7 13.8 143 121-368 28-176 (218)
10 2abk_A Endonuclease III; DNA-r 99.9 2.2E-23 7.4E-28 193.2 12.2 106 251-371 57-168 (211)
11 1kg2_A A/G-specific adenine gl 99.9 5E-23 1.7E-27 192.6 13.1 110 251-375 58-173 (225)
12 1orn_A Endonuclease III; DNA r 99.9 2.5E-22 8.5E-27 188.3 14.9 105 251-370 61-172 (226)
13 1kea_A Possible G-T mismatches 99.9 7.2E-23 2.5E-27 191.2 10.5 89 252-355 64-157 (221)
14 3fsp_A A/G-specific adenine gl 99.8 4.1E-20 1.4E-24 183.9 16.0 87 252-356 68-161 (369)
15 3fhg_A Mjogg, N-glycosylase/DN 99.8 2.5E-20 8.6E-25 172.5 12.3 91 252-354 64-158 (207)
16 3n5n_X A/G-specific adenine DN 99.8 2.7E-20 9.1E-25 180.6 12.4 97 252-366 78-184 (287)
17 3n0u_A Probable N-glycosylase/ 99.8 9.8E-19 3.4E-23 163.7 10.4 89 255-354 76-171 (219)
18 3fhf_A Mjogg, N-glycosylase/DN 99.7 7.7E-18 2.6E-22 157.1 9.9 88 256-355 71-167 (214)
19 4e9f_A Methyl-CPG-binding doma 99.7 2.3E-17 7.8E-22 147.8 12.2 84 251-355 59-148 (161)
20 3vdp_A Recombination protein R 87.7 0.35 1.2E-05 44.7 3.6 30 307-336 20-50 (212)
21 2fmp_A DNA polymerase beta; nu 87.6 0.83 2.8E-05 44.6 6.4 57 264-330 57-115 (335)
22 1vdd_A Recombination protein R 86.4 0.44 1.5E-05 44.5 3.5 30 307-336 6-36 (228)
23 2ihm_A POL MU, DNA polymerase 84.7 0.73 2.5E-05 45.5 4.3 56 266-330 63-119 (360)
24 2ztd_A Holliday junction ATP-d 84.0 2.1 7.1E-05 39.5 6.8 22 312-333 122-143 (212)
25 4glx_A DNA ligase; inhibitor, 83.2 1.2 4.2E-05 46.9 5.4 93 252-353 468-577 (586)
26 1jms_A Terminal deoxynucleotid 81.9 1.1 3.7E-05 44.7 4.3 56 266-330 82-138 (381)
27 2bcq_A DNA polymerase lambda; 81.7 2.4 8.3E-05 41.4 6.6 56 264-330 57-113 (335)
28 2ztd_A Holliday junction ATP-d 81.2 1 3.4E-05 41.6 3.5 29 307-335 82-110 (212)
29 1z00_B DNA repair endonuclease 80.9 1.2 4.3E-05 35.1 3.5 28 309-336 14-41 (84)
30 3b0x_A DNA polymerase beta fam 80.2 2.5 8.4E-05 44.0 6.5 70 255-335 44-115 (575)
31 2a1j_A DNA repair endonuclease 79.2 1.2 4E-05 33.1 2.7 26 312-337 3-28 (63)
32 1ixr_A Holliday junction DNA h 79.1 1.3 4.4E-05 40.1 3.4 21 313-333 107-127 (191)
33 1x2i_A HEF helicase/nuclease; 78.1 2.1 7E-05 31.7 3.8 29 307-335 8-36 (75)
34 2duy_A Competence protein come 76.9 1.3 4.6E-05 33.4 2.5 20 312-331 26-45 (75)
35 1x2i_A HEF helicase/nuclease; 76.5 1.7 5.7E-05 32.2 2.9 23 312-334 45-67 (75)
36 1ixr_A Holliday junction DNA h 76.4 4.7 0.00016 36.4 6.4 32 249-282 59-91 (191)
37 1cuk_A RUVA protein; DNA repai 76.0 1.7 5.7E-05 39.7 3.3 18 313-330 108-125 (203)
38 1z00_A DNA excision repair pro 72.9 2.8 9.4E-05 32.6 3.4 27 309-335 15-41 (89)
39 2edu_A Kinesin-like protein KI 72.9 6.8 0.00023 31.1 5.8 56 255-330 31-87 (98)
40 1z00_A DNA excision repair pro 72.6 3.1 0.00011 32.3 3.6 23 312-334 50-72 (89)
41 2ihm_A POL MU, DNA polymerase 72.2 9.9 0.00034 37.3 8.0 84 265-364 29-117 (360)
42 1jms_A Terminal deoxynucleotid 72.0 9.9 0.00034 37.7 8.0 84 265-364 48-136 (381)
43 2w9m_A Polymerase X; SAXS, DNA 71.9 1.7 6E-05 45.2 2.6 63 258-331 51-115 (578)
44 2a1j_B DNA excision repair pro 71.2 3.3 0.00011 32.4 3.5 27 309-335 28-54 (91)
45 2bcq_A DNA polymerase lambda; 71.1 6 0.00021 38.5 6.1 55 266-336 26-82 (335)
46 2duy_A Competence protein come 70.7 1.7 5.8E-05 32.8 1.7 52 255-330 18-70 (75)
47 1kft_A UVRC, excinuclease ABC 70.2 3 0.0001 31.7 3.0 22 312-333 55-76 (78)
48 2csb_A Topoisomerase V, TOP61; 70.0 8.3 0.00028 37.2 6.6 50 281-338 387-436 (519)
49 2owo_A DNA ligase; protein-DNA 70.0 5.7 0.0002 42.4 6.1 82 253-352 469-576 (671)
50 2a1j_B DNA excision repair pro 68.1 2.9 9.8E-05 32.7 2.5 23 312-334 63-85 (91)
51 1kft_A UVRC, excinuclease ABC 65.3 2.9 9.9E-05 31.7 2.0 26 310-335 21-46 (78)
52 3arc_U Photosystem II 12 kDa e 64.1 2.5 8.6E-05 34.3 1.5 55 252-330 14-69 (97)
53 1s5l_U Photosystem II 12 kDa e 63.3 2.5 8.6E-05 36.4 1.4 51 255-329 54-105 (134)
54 1cuk_A RUVA protein; DNA repai 63.1 7.2 0.00024 35.5 4.5 31 249-281 60-91 (203)
55 1dgs_A DNA ligase; AMP complex 62.8 6.6 0.00022 42.0 4.8 71 253-334 464-560 (667)
56 2fmp_A DNA polymerase beta; nu 60.0 15 0.0005 35.8 6.4 49 272-336 32-82 (335)
57 2edu_A Kinesin-like protein KI 58.9 5.1 0.00017 31.8 2.4 19 312-330 39-57 (98)
58 2jg6_A DNA-3-methyladenine gly 58.7 1E+02 0.0035 27.7 12.8 81 254-335 64-171 (186)
59 3b0x_A DNA polymerase beta fam 58.4 13 0.00043 38.6 5.9 38 66-103 4-41 (575)
60 1s5l_U Photosystem II 12 kDa e 57.5 3.9 0.00013 35.2 1.6 19 312-330 62-80 (134)
61 3arc_U Photosystem II 12 kDa e 57.3 3.8 0.00013 33.2 1.4 20 312-331 25-44 (97)
62 2kp7_A Crossover junction endo 55.4 6.1 0.00021 31.3 2.3 40 274-329 35-74 (87)
63 2w9m_A Polymerase X; SAXS, DNA 54.5 15 0.00051 38.1 5.8 51 265-331 98-149 (578)
64 2i5h_A Hypothetical protein AF 53.1 5.4 0.00018 36.6 1.8 19 312-330 131-149 (205)
65 1wcn_A Transcription elongatio 50.6 20 0.0007 27.0 4.5 35 251-285 27-62 (70)
66 4gfj_A Topoisomerase V; helix- 49.9 9.5 0.00032 39.1 3.2 86 248-335 534-644 (685)
67 2bgw_A XPF endonuclease; hydro 44.0 17 0.00057 32.6 3.6 27 310-336 159-185 (219)
68 2bgw_A XPF endonuclease; hydro 41.2 17 0.00057 32.6 3.2 22 313-334 194-215 (219)
69 3r8n_M 30S ribosomal protein S 39.6 20 0.0007 29.8 3.2 44 309-352 12-59 (114)
70 2nrt_A Uvrabc system protein C 35.0 24 0.00081 32.6 3.1 28 311-338 166-193 (220)
71 3iz6_M 40S ribosomal protein S 34.8 25 0.00086 30.7 3.1 43 309-351 24-70 (152)
72 3j20_O 30S ribosomal protein S 34.7 25 0.00086 30.6 3.1 26 309-334 19-44 (148)
73 1vq8_Y 50S ribosomal protein L 33.5 8.9 0.0003 35.8 0.0 28 312-339 14-42 (241)
74 3u5c_S 40S ribosomal protein S 32.5 24 0.00081 30.7 2.6 41 310-350 27-71 (146)
75 2xzm_M RPS18E; ribosome, trans 30.6 32 0.0011 30.1 3.1 26 310-335 27-52 (155)
76 1vq8_Y 50S ribosomal protein L 30.2 11 0.00037 35.2 0.0 19 312-330 47-65 (241)
77 2a1j_A DNA repair endonuclease 29.4 47 0.0016 24.2 3.5 33 249-281 21-53 (63)
78 3mkl_A HTH-type transcriptiona 29.3 2.1E+02 0.007 22.4 8.4 84 262-366 25-108 (120)
79 2ofk_A 3-methyladenine DNA gly 28.4 3.2E+02 0.011 24.4 13.0 82 254-335 64-171 (183)
80 1exn_A 5'-exonuclease, 5'-nucl 27.1 29 0.00099 33.2 2.4 24 314-337 204-227 (290)
81 1z3e_B DNA-directed RNA polyme 26.9 35 0.0012 26.0 2.4 31 289-330 28-58 (73)
82 3c65_A Uvrabc system protein C 26.6 14 0.00047 34.3 0.0 29 311-339 171-199 (226)
83 2vqe_M 30S ribosomal protein S 24.0 31 0.001 29.2 1.7 25 310-334 14-38 (126)
84 3c1y_A DNA integrity scanning 23.7 51 0.0018 32.8 3.5 41 248-288 331-372 (377)
85 3ory_A Flap endonuclease 1; hy 22.8 43 0.0015 32.8 2.7 23 315-337 252-275 (363)
86 2izo_A FEN1, flap structure-sp 22.7 40 0.0014 32.6 2.5 26 314-339 234-260 (346)
87 1z00_B DNA repair endonuclease 22.1 71 0.0024 24.8 3.4 35 248-282 34-68 (84)
88 3q8k_A Flap endonuclease 1; he 21.7 41 0.0014 32.6 2.3 16 317-332 236-251 (341)
89 1b22_A DNA repair protein RAD5 20.9 67 0.0023 26.4 3.2 38 251-288 45-83 (114)
90 3sgi_A DNA ligase; HET: DNA AM 20.6 21 0.00072 37.8 0.0 23 312-334 560-582 (615)
91 3sgi_A DNA ligase; HET: DNA AM 20.1 22 0.00075 37.6 0.0 22 316-337 532-553 (615)
No 1
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=100.00 E-value=2.7e-42 Score=334.90 Aligned_cols=229 Identities=16% Similarity=0.264 Sum_probs=190.2
Q ss_pred EEEEecCCCCCCcEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCccchHhHHHHHHHhHHHHhhhccccccccCCc
Q 016856 35 DVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFS 114 (381)
Q Consensus 35 ~v~i~~~~~~~~~L~v~v~~~~~~~~~~~s~~~~~~i~~~v~r~l~Ld~d~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g 114 (381)
+|.|+|. ++.+. +++. +.+++.++|++||+||.| +.++++....++.+..... ...|
T Consensus 51 ~~~l~q~---~~~~~--~~~~-----------~~~~~~~~~~~~fdLd~d----~~~~~~~l~~Dp~l~~~~~---~~~g 107 (290)
T 3i0w_A 51 VVEVQKI---GEDVV--IYNI-----------NEEEFKNVWSEYFDLYRD----YGEIKKELSRDPLLKKSVD---FGEG 107 (290)
T ss_dssp EEEEEEE---TTEEE--EETC-----------CHHHHHHTHHHHTTTTSC----HHHHHHHHTTSHHHHHHHH---HTTT
T ss_pred EEEEEEc---CCEEE--EEcC-----------CHHHHHHHHHHHcCCCCC----HHHHHHHHhhCHHHHHHHH---HCCC
Confidence 5688887 66554 3331 235678889999999999 5555543322333221111 1246
Q ss_pred ccccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhh
Q 016856 115 GRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIA 194 (381)
Q Consensus 115 gRv~r~p~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 194 (381)
.|+++ +|+||.||++||+||++++++.+|.++||+.+|+ |+
T Consensus 108 lR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~----------------~~---------------------- 148 (290)
T 3i0w_A 108 IRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGK----------------KL---------------------- 148 (290)
T ss_dssp CCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSC----------------EE----------------------
T ss_pred CCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCC----------------Cc----------------------
Confidence 79999 7999999999999999999999999999999987 22
Q ss_pred hhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCCccccccCCCCHHHHhcCCHHHHHHhCcCcH
Q 016856 195 ESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGY 274 (381)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPTpe~La~~~~e~Lr~~~g~Gy 274 (381)
+++ +..++.||||++|+++++++|++ +|+||
T Consensus 149 -----------------------------------~~~-------------g~~~~~fPtpe~la~~~~e~L~~-~g~g~ 179 (290)
T 3i0w_A 149 -----------------------------------EYK-------------GKIYYAFPTVDKLHEFTEKDFEE-CTAGF 179 (290)
T ss_dssp -----------------------------------EET-------------TEEEECCCCHHHHTTCCHHHHHH-TTCGG
T ss_pred -----------------------------------ccC-------------CcccccCCcHHHHHCCCHHHHHH-cCCch
Confidence 122 23789999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH-HHhCCCCccccchHHHHHHHHhh
Q 016856 275 RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRHLKQVH 353 (381)
Q Consensus 275 RAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL-~~Lg~~dvfPvDt~v~Ril~rly 353 (381)
||+||+++|+++.+|.++++.|..+ +++++++.|++|||||||||+||| |++|++|+||+|+||+|+++++|
T Consensus 180 Ra~~I~~~A~~i~~g~~~l~~l~~~-------~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r~~~rl~ 252 (290)
T 3i0w_A 180 RAKYLKDTVDRIYNGELNLEYIKSL-------NDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLY 252 (290)
T ss_dssp GHHHHHHHHHHHHTTSSCHHHHHHS-------CHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhcC-------CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHHHHHHhc
Confidence 9999999999999999999999988 999999999999999999999995 89999999999999999999998
Q ss_pred ccC-CChHHHHHHHHHHhccCCCc--ccccC
Q 016856 354 ARN-CTSKTVQMIAESIYGKYAPF--QFLAY 381 (381)
Q Consensus 354 ~~~-~s~k~i~~~~~~~~g~~aGw--q~Lfy 381 (381)
... .+++++++.+++.|+||+|| +||||
T Consensus 253 ~~~~~~~~~i~~~~~~~~~p~~~~A~~~Lw~ 283 (290)
T 3i0w_A 253 VAPDVSLKKIRDFGREKFGSLSGFAQQYLFY 283 (290)
T ss_dssp SCTTCCHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 653 67788999988999999999 88875
No 2
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=100.00 E-value=2.1e-40 Score=321.98 Aligned_cols=242 Identities=17% Similarity=0.250 Sum_probs=195.6
Q ss_pred ccCCCccccceecCCCCCCCCCCCceeEEEEecCCCCCCcEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCccchH
Q 016856 8 DPLSRSLSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADER 87 (381)
Q Consensus 8 ~~~~~~~~r~lrl~~~~~~~~~~~~~~~v~i~~~~~~~~~L~v~v~~~~~~~~~~~s~~~~~~i~~~v~r~l~Ld~d~~~ 87 (381)
.-..++|.|+++++++ ++.|+|++. ..+.+.|+ +. ....+.+.++++|++||+||.|
T Consensus 29 ~~~~~~~~R~~~~~~~---------~~~v~v~~~--~~~~~~~~--~~-------~~~~~~~~~~~~~~~~fdLd~d--- 85 (295)
T 2jhn_A 29 VVESGVWRRAIVLDGR---------AVAVMAYPE--SERTIVVE--GN-------FENREWEAVRRKLVEYLGLQNP--- 85 (295)
T ss_dssp EEETTEEEEEEEETTE---------EEEEEEEEE--ETTEEEEE--ES-------SCGGGHHHHHHHHHHHHTCSCC---
T ss_pred EEeCCEEEEEEEECCe---------eEEEEEEEC--CCCEEEEe--cC-------CchhhHHHHHHHHHHHhCCCCC---
Confidence 3456899999999987 899999874 24566665 42 1346788999999999999999
Q ss_pred hHHHH--HHHhHHHHhhhccccccccCC-cccccC--CCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCC
Q 016856 88 NVRDF--KRIVRQVAQEEGEESQYMTDF-SGRVFR--SPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSI 162 (381)
Q Consensus 88 ~~~~f--~~~~~~~~~~~~~~~~~~~~~-ggRv~r--~p~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g~l~~~~~~~ 162 (381)
+..| .+.|+..+.+. ..+ |.|+++ .+|+||.||++||+||+++.++.++..+||+.||+
T Consensus 86 -~~~~~~~~~D~~l~~l~-------~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~-------- 149 (295)
T 2jhn_A 86 -EELYRFMDGDEKLRMLK-------NRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGD-------- 149 (295)
T ss_dssp -HHHHHHHHTSHHHHHHH-------HHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSC--------
T ss_pred -HHHHHhhccCHHHHHHH-------HHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCC--------
Confidence 5554 44444443332 113 559999 88999999999999999999999999999999987
Q ss_pred CCCCCCCCCCcchhhhhhhhhhhhhhhhhhhhhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCC
Q 016856 163 SEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDP 242 (381)
Q Consensus 163 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
++ +.+
T Consensus 150 --------~~---------------------------------------------------------~~~---------- 154 (295)
T 2jhn_A 150 --------EV---------------------------------------------------------EWN---------- 154 (295)
T ss_dssp --------EE---------------------------------------------------------EET----------
T ss_pred --------CC---------------------------------------------------------CCC----------
Confidence 21 112
Q ss_pred CCccccccCCCCHHHHhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCcc
Q 016856 243 PSARDRIGNFPSPRELANLDESFLAKRCNLGY-RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGF 321 (381)
Q Consensus 243 p~~~~~~~~FPTpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GI 321 (381)
|..+|.||||++|+++++++|+. +|+++ ||+||+++|++ | +++.|.++ +++++++.|++||||
T Consensus 155 ---g~~~~~fPtp~~la~~~~~~Lr~-~G~~~rKa~~i~~~A~~---g--~l~~l~~~-------~~~e~~~~L~~lpGI 218 (295)
T 2jhn_A 155 ---GLKFYGFPTQEAILKAGVEGLRE-CGLSRRKAELIVEIAKE---E--NLEELKEW-------GEEEAYEYLTSFKGI 218 (295)
T ss_dssp ---TEEEECCCCHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHTC---S--SGGGGGGS-------CHHHHHHHHHTSTTC
T ss_pred ---CCccccCCCHHHHHcCCHHHHHH-cCCCHHHHHHHHHHHHC---C--CHhhhhcC-------CHHHHHHHHhcCCCc
Confidence 23689999999999999999987 99988 59999999998 4 67777777 889999999999999
Q ss_pred ChHHHHHHH-HHhCCCCcccc-chHHHHHHHHhhccC---CChHHHHHHHHHHhccCCCc--ccccC
Q 016856 322 GPFTRNNVL-VCIGFYHVIPT-DSETIRHLKQVHARN---CTSKTVQMIAESIYGKYAPF--QFLAY 381 (381)
Q Consensus 322 GpwTAd~VL-~~Lg~~dvfPv-Dt~v~Ril~rly~~~---~s~k~i~~~~~~~~g~~aGw--q~Lfy 381 (381)
|||||+||| |++| +|+||+ |.+++|+++++|+.. .+++++++. .+.|++|++| +|||+
T Consensus 219 G~~TA~~ill~~lg-~d~fpvdD~~~rr~~~~~~g~~~~~~~~~~~~~~-~e~~~p~r~~a~~~Lw~ 283 (295)
T 2jhn_A 219 GRWTAELVLSIALG-KNVFPADDLGVRRAVSRLYFNGEIQSAEKVREIA-RERFGRFARDILFYLFL 283 (295)
T ss_dssp CHHHHHHHHHHTTC-CCCCCTTCHHHHHHHHHHHSTTCCCCHHHHHHHH-HHHTGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHccC-CCcccchHHHHHHHHHHHhcCCCCCCCHHHHHHH-HHhcccHHHHHHHHHHH
Confidence 999999995 7999 999995 899999999998653 455666654 5789999999 77764
No 3
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=100.00 E-value=2.5e-39 Score=322.81 Aligned_cols=241 Identities=18% Similarity=0.231 Sum_probs=188.6
Q ss_pred eEEEEecCCCCCCcEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCccchHhHHHHHHHhHHHHhhhccccccccCC
Q 016856 34 VDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDF 113 (381)
Q Consensus 34 ~~v~i~~~~~~~~~L~v~v~~~~~~~~~~~s~~~~~~i~~~v~r~l~Ld~d~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 113 (381)
.+|+|+|. +++|.+++++.... .. ..+...++++|++||+||.|+......+.+.|+.++.+.. . ..
T Consensus 77 ~v~~l~q~---~~~v~~~~~~~~~~---~~-~~~~~~~~~~~r~~fdLd~d~~~~~~~l~~~Dp~l~~l~~---~---~~ 143 (360)
T 2xhi_A 77 QVWTLTQT---EEQLHCTVYRGDKS---QA-SRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQ---K---FQ 143 (360)
T ss_dssp EEEEEEEC---SSEEEEEEECCSSS---CC-CCCCHHHHHHHHHHTTTTSCHHHHHHHHHHHCHHHHHHHH---H---ST
T ss_pred EEEEEEEc---CCEEEEEEecCccc---cc-ccchHHHHHHHHHhcccCCCHHHHHHHHHhhCHHHHHHHH---H---cC
Confidence 35677776 67899999985211 11 1244567889999999999944444444445554433321 1 12
Q ss_pred cccccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhh
Q 016856 114 SGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRI 193 (381)
Q Consensus 114 ggRv~r~p~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 193 (381)
|.|+++ +|+||.||++||+||+++.++.+|..+||+.||+ ++.
T Consensus 144 glR~~~-~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~----------------~~~-------------------- 186 (360)
T 2xhi_A 144 GVRLLR-QDPIECLFSFICSSNNNIARITGMVERLCQAFGP----------------RLI-------------------- 186 (360)
T ss_dssp TCCCCC-CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSC----------------EEE--------------------
T ss_pred CCCCCC-CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCC----------------Ccc--------------------
Confidence 569999 5999999999999999999999999999999987 321
Q ss_pred hhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCCccccccCCCCHHHHhcCCHH-HHHHhCcC
Q 016856 194 AESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDES-FLAKRCNL 272 (381)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPTpe~La~~~~e-~Lr~~~g~ 272 (381)
+++| ..+|.||||++|++++++ .|+. +|+
T Consensus 187 ------------------------------------~~~g-------------~~~~~fPtpe~La~~~~ee~Lr~-~Gl 216 (360)
T 2xhi_A 187 ------------------------------------QLDD-------------VTYHGFPSLQALAGPEVEAHLRK-LGL 216 (360)
T ss_dssp ------------------------------------EETT-------------EEEECCCCHHHHTSTTHHHHHHH-TTC
T ss_pred ------------------------------------cCCC-------------cccccCCCHHHHHcCCHHHHHHH-cCC
Confidence 1222 267899999999999875 6776 999
Q ss_pred cHHHHHHHHHHHHHHhC---CCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH-HHhCCCCccccchHHHHH
Q 016856 273 GYRAGRILKLARGIVDG---QIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRH 348 (381)
Q Consensus 273 GyRAkyI~~lA~~i~~G---~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL-~~Lg~~dvfPvDt~v~Ri 348 (381)
||||+||+++|+++.+| .++++.|..+ +++++++.|++|||||||||+||| |++|++|+||+|+||+|+
T Consensus 217 ~~RA~~I~~~A~~i~~~~~G~~~L~~l~~~-------~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpvDthV~Ri 289 (360)
T 2xhi_A 217 GYRARYVSASARAILEEQGGLAWLQQLRES-------SYEEAHKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHI 289 (360)
T ss_dssp TTHHHHHHHHHHHHHHTTCTHHHHHGGGTS-------CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCSHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCccCHHHHhcC-------CHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEecHHHHHH
Confidence 99999999999999975 4678887776 899999999999999999999995 899999999999999999
Q ss_pred HHHhhccCC--------Ch---HHHHHHHHHHhccCCCc--ccccC
Q 016856 349 LKQVHARNC--------TS---KTVQMIAESIYGKYAPF--QFLAY 381 (381)
Q Consensus 349 l~rly~~~~--------s~---k~i~~~~~~~~g~~aGw--q~Lfy 381 (381)
++++|+... +. +++.+.+.+.|++|++| +||||
T Consensus 290 ~~r~~gl~~~~~~~k~~~~~~~~~l~~~~~e~w~p~~~~a~~yLw~ 335 (360)
T 2xhi_A 290 AQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFS 335 (360)
T ss_dssp HHHHHCCCCSSCSCSSCCHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHhCcccccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999876421 12 34455678899999999 88875
No 4
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=100.00 E-value=8.5e-39 Score=308.54 Aligned_cols=237 Identities=17% Similarity=0.163 Sum_probs=189.9
Q ss_pred CCccccceecCCCCCCCCCCCceeEEEEecCCCCCCcEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCccchHhHH
Q 016856 11 SRSLSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVR 90 (381)
Q Consensus 11 ~~~~~r~lrl~~~~~~~~~~~~~~~v~i~~~~~~~~~L~v~v~~~~~~~~~~~s~~~~~~i~~~v~r~l~Ld~d~~~~~~ 90 (381)
.++|.|+++++++ ++.|+|++.+ +...+.+++..+ . ..+.+.+.+++++||+||.| +.
T Consensus 32 ~~~y~r~~~~~~~---------~~~v~v~~~~-~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~ld~d----~~ 89 (282)
T 1mpg_A 32 DSYYARSLAVGEY---------RGVVTAIPDI-ARHTLHINLSAG------L--EPVAAECLAKMSRLFDLQCN----PQ 89 (282)
T ss_dssp SSCEEEEEEETTE---------EEEEEEEEET-TTTEEEEEECGG------G--GGGHHHHHHHHHHHHTTTCC----HH
T ss_pred CCEEEEEEEECCE---------eEEEEEEEcC-CCcEEEEEEecC------C--CccHHHHHHHHHHHHcCCCC----HH
Confidence 3789999999987 8999998762 234566666631 0 14678899999999999999 66
Q ss_pred HHHHHhHHHHhhhccccccccCCcccccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCC
Q 016856 91 DFKRIVRQVAQEEGEESQYMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQT 170 (381)
Q Consensus 91 ~f~~~~~~~~~~~~~~~~~~~~~ggRv~r~p~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g~l~~~~~~~~~~~~~~~ 170 (381)
.++.... .+. ....|.|+++.+|+||.||++||+||+++.++.++..+||+.||+
T Consensus 90 ~~~~~l~---~l~------~~~~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~---------------- 144 (282)
T 1mpg_A 90 IVNGALG---RLG------AARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGE---------------- 144 (282)
T ss_dssp HHHHHHG---GGG------TTCTTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHH---HHH------HHcCCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCC----------------
Confidence 6665321 111 011367999999999999999999999999999999999999987
Q ss_pred CCcchhhhhhhhhhhhhhhhhhhhhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCCcccccc
Q 016856 171 PAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIG 250 (381)
Q Consensus 171 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 250 (381)
++. .. + .++
T Consensus 145 ~~~---------------------------------------------------------~~-------------~-~~~ 153 (282)
T 1mpg_A 145 RLD---------------------------------------------------------DF-------------P-EYI 153 (282)
T ss_dssp BCS---------------------------------------------------------SC-------------T-TCB
T ss_pred CCC---------------------------------------------------------CC-------------C-Ccc
Confidence 221 00 1 478
Q ss_pred CCCCHHHHhcCCHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHH
Q 016856 251 NFPSPRELANLDESFLAKRCNL-GYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNV 329 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~g~-GyRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~V 329 (381)
.||||++|+++++++|+. +|+ ++||+||+++|+++.+|.++++.+ + ++++++++|++|||||||||+||
T Consensus 154 ~fPtp~~la~~~~~~Lr~-~G~~~~ra~~i~~~A~~~~~~~~~~~~~--~-------~~~~~~~~L~~lpGIG~~TA~~i 223 (282)
T 1mpg_A 154 CFPTPQRLAAADPQALKA-LGMPLKRAEALIHLANAALEGTLPMTIP--G-------DVEQAMKTLQTFPGIGRWTANYF 223 (282)
T ss_dssp CCCCHHHHHTCCHHHHHH-TTSCHHHHHHHHHHHHHHHHTCSCSSCC--S-------CHHHHHHHHTTSTTCCHHHHHHH
T ss_pred cCCCHHHHHcCCHHHHHH-cCCCHHHHHHHHHHHHHHHcCCCCcccc--C-------CHHHHHHHHhcCCCcCHHHHHHH
Confidence 999999999999999987 887 899999999999999998877655 3 88999999999999999999999
Q ss_pred H-HHhCCCCcccc-chHHHHHHHHhhccCCChHHHHHHHHHHhccCCCc--ccccC
Q 016856 330 L-VCIGFYHVIPT-DSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPF--QFLAY 381 (381)
Q Consensus 330 L-~~Lg~~dvfPv-Dt~v~Ril~rly~~~~s~k~i~~~~~~~~g~~aGw--q~Lfy 381 (381)
| |++|++|+||+ |.++++.+. ..+++++++.+ +.|.+|++| ++||+
T Consensus 224 ll~~lg~~d~~pvdd~~~r~~l~-----~~~~~~~~~~~-~~~~P~r~~a~~~lw~ 273 (282)
T 1mpg_A 224 ALRGWQAKDVFLPDDYLIKQRFP-----GMTPAQIRRYA-ERWKPWRSYALLHIWY 273 (282)
T ss_dssp HHHHSCCSSCCCTTCHHHHHHST-----TCCHHHHHHHH-GGGTTCHHHHHHHHHT
T ss_pred HHHhCCCCCcCccccHHHHHHhc-----cCCHHHHHHHH-HHcCCHHHHHHHHHHH
Confidence 5 89999999995 777665552 45677777665 778888888 76764
No 5
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=100.00 E-value=7.4e-37 Score=288.49 Aligned_cols=195 Identities=17% Similarity=0.261 Sum_probs=160.3
Q ss_pred HHhcCCccchHhHHHHHHHhHHHHhhhccccccccCCcc-cccC--CCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 016856 77 RMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFSG-RVFR--SPTLFEDMVKCMLLCNCQWPRTLSMARALCELQW 153 (381)
Q Consensus 77 r~l~Ld~d~~~~~~~f~~~~~~~~~~~~~~~~~~~~~gg-Rv~r--~p~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g 153 (381)
-+|+||.|.....+.+.+.|+....+- ..+|+ |+.. .+|+||.||++||+||+++.++.++..+||+.||
T Consensus 18 ~~ldld~d~~~~~~~L~~~Dp~l~~li-------~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G 90 (232)
T 4b21_A 18 SHMSKDSDYKRAEKHLSSIDNKWSSLV-------KKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCS 90 (232)
T ss_dssp ---CHHHHHHHHHHHHTTTCHHHHHHH-------HHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHC
T ss_pred CcCCCccCHHHHHHHHHhhCHHHHHHH-------HHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhC
Confidence 368888886555555555555444432 12344 7654 3499999999999999999999999999999877
Q ss_pred hhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhhhhhcchhhhhhhhcccccccccCCCCCCCCCCccccccc
Q 016856 154 ELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHG 233 (381)
Q Consensus 154 ~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (381)
+
T Consensus 91 ~------------------------------------------------------------------------------- 91 (232)
T 4b21_A 91 D------------------------------------------------------------------------------- 91 (232)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 5
Q ss_pred ccCCCCCCCCCccccccCCCCHHHHhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHhCCC-ChhHHHhhhhhcccCcHHHH
Q 016856 234 LNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGY-RAGRILKLARGIVDGQI-QLRELEDMCNEASLTAYVKL 311 (381)
Q Consensus 234 ~~~~~~~~~p~~~~~~~~FPTpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~G~l-~Le~L~~l~~~~~~~~~ee~ 311 (381)
.+.||||++|+++++++|+. ||+++ ||+||+++|+.+.+|.+ +++.|.++ +++++
T Consensus 92 ---------------~~~fPtpe~la~~~~e~Lr~-~Gl~~~Ka~~l~~~A~~~~~g~~p~l~~l~~~-------~~~~~ 148 (232)
T 4b21_A 92 ---------------NDEFPTPKQIMETDVETLHE-CGFSKLKSQEIHIVAEAALNKQIPSKSEIEKM-------SEEEL 148 (232)
T ss_dssp ---------------SSSCCCHHHHHTSCHHHHHT-TTCCHHHHHHHHHHHHHHHTTCSCCHHHHHHS-------CHHHH
T ss_pred ---------------CCCCCCHHHHHcCCHHHHHH-cCCcHHHHHHHHHHHHHHHhCCCCCHHHHHcC-------CHHHH
Confidence 14699999999999999987 99987 59999999999999999 79999988 99999
Q ss_pred HHHHhcCCccChHHHHHHH-HHhCCCCcccc-chHHHHHHHHhhccC--CChHHHHHHHHHHhccCCCc--ccccC
Q 016856 312 AEQLSQINGFGPFTRNNVL-VCIGFYHVIPT-DSETIRHLKQVHARN--CTSKTVQMIAESIYGKYAPF--QFLAY 381 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL-~~Lg~~dvfPv-Dt~v~Ril~rly~~~--~s~k~i~~~~~~~~g~~aGw--q~Lfy 381 (381)
+++|++|||||||||+||| |+||++|+||+ |+||+|+++++|+.+ .+++++++. .+.|+||++| +|||+
T Consensus 149 ~~~L~~l~GIG~~TA~~ill~alg~pd~fpv~D~~v~r~~~rl~~~~~~~~~~~~~~~-~e~w~P~rs~A~~yLw~ 223 (232)
T 4b21_A 149 MESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQTEEVEKL-TKPCKPYRTIAAWYLWQ 223 (232)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHHHHHHHHTTCSSCCCHHHHHHH-TGGGTTCHHHHHHHHHT
T ss_pred HHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHHhCCCCCCCHHHHHHH-HHHccCHHHHHHHHHHH
Confidence 9999999999999999996 89999999996 999999999999764 355666554 5788888888 88874
No 6
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-32 Score=259.14 Aligned_cols=164 Identities=20% Similarity=0.303 Sum_probs=141.9
Q ss_pred cccccCCC---ChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhh
Q 016856 114 SGRVFRSP---TLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLT 190 (381)
Q Consensus 114 ggRv~r~p---~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 190 (381)
|.|+.+.+ |+||.||++||+||+++.++.++..+| +.+|.
T Consensus 38 ~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg------------------------------------ 80 (228)
T 3s6i_A 38 NYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISN------------------------------------ 80 (228)
T ss_dssp SCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSG------------------------------------
T ss_pred CCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcC------------------------------------
Confidence 34887655 999999999999999999999999999 76420
Q ss_pred hhhhhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCCccccccCCCCHHHHhcCCHHHHHHhC
Q 016856 191 SRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRC 270 (381)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPTpe~La~~~~e~Lr~~~ 270 (381)
.+.||||++|+++++++|+. +
T Consensus 81 ----------------------------------------------------------~~~fPtp~~la~~~~e~Lr~-~ 101 (228)
T 3s6i_A 81 ----------------------------------------------------------NGQFPTPEEIRDMDFEIMRA-C 101 (228)
T ss_dssp ----------------------------------------------------------GGSCCCHHHHHHSCHHHHHH-H
T ss_pred ----------------------------------------------------------CCCCCCHHHHHcCCHHHHHH-c
Confidence 14699999999999999987 8
Q ss_pred cCcH-HHHHHHHHHHHHHhCCC-ChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH-HHhCCCCcccc-chHHH
Q 016856 271 NLGY-RAGRILKLARGIVDGQI-QLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPT-DSETI 346 (381)
Q Consensus 271 g~Gy-RAkyI~~lA~~i~~G~l-~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL-~~Lg~~dvfPv-Dt~v~ 346 (381)
|+++ ||+||+++|+.+.+|.+ +++.|.++ +++++++.|++|||||||||+||| |++|++|+||+ |.+++
T Consensus 102 G~~~rKa~~i~~~A~~~~~g~~p~~~~l~~~-------~~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpvdD~~v~ 174 (228)
T 3s6i_A 102 GFSARKIDSLKSIAEATISGLIPTKEEAERL-------SNEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPADDLSIR 174 (228)
T ss_dssp TCCHHHHHHHHHHHHHHHHTSSCCHHHHTTS-------CHHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCChHHHhcC-------CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEecccHHHH
Confidence 9887 59999999999999999 68899888 999999999999999999999996 89999999995 79999
Q ss_pred HHHHHhhccC--CChHHHHHHHHHHhccCCCc--ccccC
Q 016856 347 RHLKQVHARN--CTSKTVQMIAESIYGKYAPF--QFLAY 381 (381)
Q Consensus 347 Ril~rly~~~--~s~k~i~~~~~~~~g~~aGw--q~Lfy 381 (381)
|+++++|+.+ .+++.+.+. .+.|+||+|| +|||+
T Consensus 175 r~~~~~~~~~~~~~~~~~~~~-~e~w~P~r~~A~~yLw~ 212 (228)
T 3s6i_A 175 NGYRYLHRLPKIPTKMYVLKH-SEICAPFRTAAAWYLWK 212 (228)
T ss_dssp HHHHHHTTCSSCCCHHHHHHH-HGGGTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHH-HHHhCCHHHHHHHHHHH
Confidence 9999998754 355655544 5788888888 77763
No 7
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=99.97 E-value=1.2e-31 Score=251.53 Aligned_cols=183 Identities=15% Similarity=0.146 Sum_probs=151.2
Q ss_pred cCCccchHhHHHHHHHhHHHHhhhccccccccCC-cc-cccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhc
Q 016856 80 RLSEADERNVRDFKRIVRQVAQEEGEESQYMTDF-SG-RVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQH 157 (381)
Q Consensus 80 ~Ld~d~~~~~~~f~~~~~~~~~~~~~~~~~~~~~-gg-Rv~r~p~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g~l~~ 157 (381)
.-+.+++.++..+.+.|+....+-. .+ |. |....+|+||.||++||+||+++.++.++..+||+.||
T Consensus 23 ~~~~~~~~~~~~l~~~D~~l~~l~~-------~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G---- 91 (225)
T 2yg9_A 23 LPPLTDHAGAVAHLSRDPVLAQVTS-------LCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPG---- 91 (225)
T ss_dssp CCCCSCSHHHHHHHTTSHHHHHHHH-------HHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTT----
T ss_pred CChhhHHHHHHHHHhcCHHHHHHHH-------HcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhC----
Confidence 3345555666666666654444321 12 34 56677899999999999999999999999999976422
Q ss_pred CCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhhhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCC
Q 016856 158 CSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNEL 237 (381)
Q Consensus 158 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (381)
T Consensus 92 -------------------------------------------------------------------------------- 91 (225)
T 2yg9_A 92 -------------------------------------------------------------------------------- 91 (225)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccccCCCCHHHHhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHh
Q 016856 238 STTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGY-RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLS 316 (381)
Q Consensus 238 ~~~~~p~~~~~~~~FPTpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll 316 (381)
.|||++|+++++++|+. +|+++ ||+||+++|+.+.+|.++++.|..+ ++++++++|+
T Consensus 92 --------------~ptp~~la~~~~e~Lr~-~G~~~~KA~~i~~lA~~~~~g~~~l~~l~~~-------~~~e~~~~L~ 149 (225)
T 2yg9_A 92 --------------GVVPAALLKVSGDDLRG-VGLSWAKVRTVQAAAAAAVSGQIDFAHLSGQ-------PDELVIAELV 149 (225)
T ss_dssp --------------CSCHHHHTTSCHHHHHH-TTCCHHHHHHHHHHHHHHHTTSSCGGGCTTS-------CHHHHHHHHH
T ss_pred --------------cCCHHHHHcCCHHHHHH-CCCcHHHHHHHHHHHHHHHhCCcCHHHHhcC-------CHHHHHHHHH
Confidence 18999999999999987 89876 8999999999999999999999887 8999999999
Q ss_pred cCCccChHHHHHHH-HHhCCCCcccc-chHHHHHHHHhhccCCChHHHHHHHHHHhccCCCc--cccc
Q 016856 317 QINGFGPFTRNNVL-VCIGFYHVIPT-DSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPF--QFLA 380 (381)
Q Consensus 317 ~L~GIGpwTAd~VL-~~Lg~~dvfPv-Dt~v~Ril~rly~~~~s~k~i~~~~~~~~g~~aGw--q~Lf 380 (381)
+|||||||||+||| |++|++|+||+ |+||+|+++++|. ++.+++. .+.|++|++| +|||
T Consensus 150 ~l~GIG~~TA~~ill~~lg~~d~fpv~D~~v~r~~~~l~~----~~~~~~~-~e~~~P~r~~a~~~Lw 212 (225)
T 2yg9_A 150 QLPGIGRWTAEMFLLFALARPDVFSSGDLALRQGVERLYP----GEDWRDV-TARWAPYRSLASRYLW 212 (225)
T ss_dssp TSTTCCHHHHHHHHHHTSCCSCCCCTTCHHHHHHHHHHST----TSCHHHH-HHHHTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhCCCCCeeeCccHHHHHHHHHhCC----HHHHHHH-HHHcCCHHHHHHHHHH
Confidence 99999999999996 89999999996 9999999999982 3445544 5789999999 6666
No 8
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=99.97 E-value=1.1e-30 Score=246.14 Aligned_cols=162 Identities=14% Similarity=0.246 Sum_probs=136.6
Q ss_pred cccccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhh
Q 016856 114 SGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRI 193 (381)
Q Consensus 114 ggRv~r~p~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 193 (381)
|.|....+|+||.||++||+||+++.++.++..+|++.||+
T Consensus 42 ~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~--------------------------------------- 82 (233)
T 2h56_A 42 EVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG--------------------------------------- 82 (233)
T ss_dssp CEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTS---------------------------------------
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC---------------------------------------
Confidence 34676778999999999999999999999999999998764
Q ss_pred hhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCCccccccCCCCHHHHhcCCHHHHHHhCcCc
Q 016856 194 AESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLG 273 (381)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPTpe~La~~~~e~Lr~~~g~G 273 (381)
.||||++|+++++++|+. +|++
T Consensus 83 ---------------------------------------------------------~fPtp~~la~~~~e~Lr~-~G~~ 104 (233)
T 2h56_A 83 ---------------------------------------------------------ALEKPEQLYRVSDEALRQ-AGVS 104 (233)
T ss_dssp ---------------------------------------------------------CCCCTHHHHTSCHHHHHH-TTCC
T ss_pred ---------------------------------------------------------CCCCHHHHHcCCHHHHHH-cCCC
Confidence 289999999999999987 8988
Q ss_pred H-HHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH-HHhCCCCccccchHHHHHHHH
Q 016856 274 Y-RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRHLKQ 351 (381)
Q Consensus 274 y-RAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL-~~Lg~~dvfPvDt~v~Ril~r 351 (381)
+ ||+||+++|+.+.+|.++++.+..+ ++++++++|++|||||||||+||| |++|++|+||+|.|+.|++.+
T Consensus 105 ~~KA~~I~~~A~~i~~~~~~~~~l~~~-------p~~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~pvdd~~~r~~~~ 177 (233)
T 2h56_A 105 KRKIEYIRHVCEHVESGRLDFTELEGA-------EATTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLSVGDVGLQRGAK 177 (233)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHTTS-------CHHHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHhcC-------CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeCchHHHHHHHH
Confidence 7 7999999999999998899888877 889999999999999999999996 899999999986665555554
Q ss_pred -hhccC--CChHHHHHHHHHHhccCCCc--cccc
Q 016856 352 -VHARN--CTSKTVQMIAESIYGKYAPF--QFLA 380 (381)
Q Consensus 352 -ly~~~--~s~k~i~~~~~~~~g~~aGw--q~Lf 380 (381)
.|+.+ .+++++++. .+.|+||++| ++||
T Consensus 178 ~~~~~~~~~~~~~~~~~-~e~~~P~~~~a~~~lw 210 (233)
T 2h56_A 178 WLYGNGEGDGKKLLIYH-GKAWAPYETVACLYLW 210 (233)
T ss_dssp HHHSSSCSCHHHHHHHH-HGGGTTCHHHHHHHHH
T ss_pred HhccCCCCCCHHHHHHH-HHHcCcHHHHHHHHHH
Confidence 46542 455666554 4677788877 5554
No 9
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=99.90 E-value=2e-23 Score=194.74 Aligned_cols=143 Identities=19% Similarity=0.179 Sum_probs=117.4
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHH-hhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhhhhhcc
Q 016856 121 PTLFEDMVKCMLLCNCQWPRTLSMARALCEL-QWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKAS 199 (381)
Q Consensus 121 p~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~-~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (381)
.|+||.||++||+||++|.++.++..+|++. +++
T Consensus 28 ~dpfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt--------------------------------------------- 62 (218)
T 1pu6_A 28 ALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILE--------------------------------------------- 62 (218)
T ss_dssp TTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSC---------------------------------------------
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCC---------------------------------------------
Confidence 5999999999999999999999999999774 211
Q ss_pred hhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCCccccccCCCCHHHHhcCCHHHHHHhC---cCcH-H
Q 016856 200 SEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRC---NLGY-R 275 (381)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPTpe~La~~~~e~Lr~~~---g~Gy-R 275 (381)
...||||++|+++++++|.+.+ |+.+ |
T Consensus 63 -------------------------------------------------~~~~~t~~~la~~~~e~L~~~ir~~G~~~~K 93 (218)
T 1pu6_A 63 -------------------------------------------------NDDEINLKKIAYIEFSKLAECVRPSGFYNQK 93 (218)
T ss_dssp -------------------------------------------------SCHHHHHHHHHHSCHHHHHHHTGGGSCHHHH
T ss_pred -------------------------------------------------ccccccHHHHHhCCHHHHHHHHHHCCCcHHH
Confidence 0126679999999999997643 4443 9
Q ss_pred HHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH-HHhCCCCccccchHHHHHHHHhhc
Q 016856 276 AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRHLKQVHA 354 (381)
Q Consensus 276 AkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL-~~Lg~~dvfPvDt~v~Ril~rly~ 354 (381)
|+||+++|+.+.++...+ ..+ +.+++++.|++|||||||||+||| +++|++ +||+|+|++|++.|++-
T Consensus 94 A~~L~~~a~~i~~~~~~l---~~~-------~~~~~~~~L~~lpGIG~kTA~~il~~a~~~~-~~~vD~~v~Ri~~rlg~ 162 (218)
T 1pu6_A 94 AKRLIDLSGNILKDFQSF---ENF-------KQEVTREWLLDQKGIGKESADAILCYACAKE-VMVVDKYSYLFLKKLGI 162 (218)
T ss_dssp HHHHHHHHHHHHHHHSSH---HHH-------HHHCCHHHHHTSTTCCHHHHHHHHHHTTCCS-CCCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCh---hhc-------cchHHHHHHHcCCCcCHHHHHHHHHHHCCCC-ccccCHHHHHHHHHcCC
Confidence 999999999998764333 344 567789999999999999999996 799996 99999999999999754
Q ss_pred cCCChHHHHHHHHH
Q 016856 355 RNCTSKTVQMIAES 368 (381)
Q Consensus 355 ~~~s~k~i~~~~~~ 368 (381)
...+++++++.+++
T Consensus 163 ~~~~~~~~~~~l~~ 176 (218)
T 1pu6_A 163 EIEDYDELQHFFEK 176 (218)
T ss_dssp CCCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 44678888887776
No 10
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=99.89 E-value=2.2e-23 Score=193.20 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=85.8
Q ss_pred CCCCHHHHhcCCHHHHHHhC-cCcH---HHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHH
Q 016856 251 NFPSPRELANLDESFLAKRC-NLGY---RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTR 326 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~-g~Gy---RAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTA 326 (381)
.||||++|+++++++|.+.+ +.|| ||+||+++|+.+.++.- . +.+++++.|++|||||||||
T Consensus 57 ~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~-------g-------~~~~~~~~L~~l~GIG~~tA 122 (211)
T 2abk_A 57 VANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHN-------G-------EVPEDRAALEALPGVGRKTA 122 (211)
T ss_dssp TCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTT-------T-------SCCSCHHHHHHSTTCCHHHH
T ss_pred HCCCHHHHHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC-------C-------CchHHHHHHHhCCCCChHHH
Confidence 49999999999999987743 3553 99999999999987421 0 22356889999999999999
Q ss_pred HHHH-HHhCCCCccccchHHHHHHHHhhcc-CCChHHHHHHHHHHhc
Q 016856 327 NNVL-VCIGFYHVIPTDSETIRHLKQVHAR-NCTSKTVQMIAESIYG 371 (381)
Q Consensus 327 d~VL-~~Lg~~dvfPvDt~v~Ril~rly~~-~~s~k~i~~~~~~~~g 371 (381)
+||| +++|++ +||+|+|++|++++++.. ..+++++++.+++++.
T Consensus 123 ~~il~~~~~~~-~~~vD~~v~Rv~~rlgl~~~~~~~~~~~~~~~~~p 168 (211)
T 2abk_A 123 NVVLNTAFGWP-TIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVP 168 (211)
T ss_dssp HHHHHHHHCCC-CCCCCHHHHHHHHHHCSSCCSSHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCC-cCCcCHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9996 899998 899999999999998632 3567778777766654
No 11
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=99.89 E-value=5e-23 Score=192.58 Aligned_cols=110 Identities=24% Similarity=0.270 Sum_probs=83.5
Q ss_pred CCCCHHHHhcCCHHHHHHh-CcCcH--HHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHH
Q 016856 251 NFPSPRELANLDESFLAKR-CNLGY--RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRN 327 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~-~g~Gy--RAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd 327 (381)
.||||++|+++++++|++. .+.|| ||+||+++|+.+.++. + . +.++.+++|++|||||||||+
T Consensus 58 ~~pt~~~la~~~~~~l~~~i~~~G~~~kA~~l~~~a~~i~~~~-~------g-------~~p~~~~~L~~lpGIG~~TA~ 123 (225)
T 1kg2_A 58 RFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLH-G------G-------KFPETFEEVAALPGVGRSTAG 123 (225)
T ss_dssp HCSSHHHHHHSCHHHHHHHHTTSCCTHHHHHHHHHHHHHHHHS-T------T-------SCCCSHHHHHTSTTCCHHHHH
T ss_pred HCCCHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHHHHh-C------C-------CchHHHHHHhcCCCCcHHHHH
Confidence 3899999999999999874 25565 9999999999998741 1 0 122458899999999999999
Q ss_pred HHH-HHhCCCCccccchHHHHHHHHhhccC--CChHHHHHHHHHHhccCCC
Q 016856 328 NVL-VCIGFYHVIPTDSETIRHLKQVHARN--CTSKTVQMIAESIYGKYAP 375 (381)
Q Consensus 328 ~VL-~~Lg~~dvfPvDt~v~Ril~rly~~~--~s~k~i~~~~~~~~g~~aG 375 (381)
+|| +++|++ +||+|+||+|+++|+|+.. .+.+.+.+.+.+....|.|
T Consensus 124 ~il~~a~~~~-~~~vD~~v~Rv~~rl~~~~~~~~~~~~~~~l~~~~~~~~p 173 (225)
T 1kg2_A 124 AILSLSLGKH-FPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTP 173 (225)
T ss_dssp HHHHHHHCCS-CCCCCHHHHHHHHHHHTCCSCTTSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCCCC-cceeCHHHHHHHHHHcCCCCCCCccchHHHHHHHHHHHCC
Confidence 996 899998 4789999999999998654 2234444444443333333
No 12
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=99.88 E-value=2.5e-22 Score=188.32 Aligned_cols=105 Identities=21% Similarity=0.249 Sum_probs=84.1
Q ss_pred CCCCHHHHhcCCHHHHHHhC-cCc---HHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHH
Q 016856 251 NFPSPRELANLDESFLAKRC-NLG---YRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTR 326 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~-g~G---yRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTA 326 (381)
.||||++|+++++++|.+.+ +.| +||+||+++|+.+.++.- . +.+++++.|++|||||||||
T Consensus 61 ~fpt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~-------g-------~~p~~~~~L~~lpGIG~~TA 126 (226)
T 1orn_A 61 KYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYN-------G-------EVPRDRDELMKLPGVGRKTA 126 (226)
T ss_dssp HCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHST-------T-------SCCSCHHHHTTSTTCCHHHH
T ss_pred HCCCHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhC-------C-------CcHHHHHHHHHCCCccHHHH
Confidence 38999999999999987754 344 499999999999987310 0 22346899999999999999
Q ss_pred HHHH-HHhCCCCccccchHHHHHHHHhhcc--CCChHHHHHHHHHHh
Q 016856 327 NNVL-VCIGFYHVIPTDSETIRHLKQVHAR--NCTSKTVQMIAESIY 370 (381)
Q Consensus 327 d~VL-~~Lg~~dvfPvDt~v~Ril~rly~~--~~s~k~i~~~~~~~~ 370 (381)
+||| +++|++ +||+|+|++|++.+++.. ..++++++..+++++
T Consensus 127 ~~il~~a~g~~-~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~ 172 (226)
T 1orn_A 127 NVVVSVAFGVP-AIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKII 172 (226)
T ss_dssp HHHHHHHHCCC-CCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHS
T ss_pred HHHHHHHCCCc-eeeeCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhc
Confidence 9996 899996 999999999999998642 356777777775543
No 13
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=99.88 E-value=7.2e-23 Score=191.19 Aligned_cols=89 Identities=18% Similarity=0.260 Sum_probs=74.2
Q ss_pred CCCHHHHhcCCHHHHHHhC---cCc-HHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHH
Q 016856 252 FPSPRELANLDESFLAKRC---NLG-YRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRN 327 (381)
Q Consensus 252 FPTpe~La~~~~e~Lr~~~---g~G-yRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd 327 (381)
||||++|+++++++|.+.+ |+. .||+||+++|+.+.++.- . +.++.+++|++|||||||||+
T Consensus 64 fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~-------g-------~~p~~~~~L~~lpGIG~~TA~ 129 (221)
T 1kea_A 64 YKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYG-------G-------RVPRNRKAILDLPGVGKYTCA 129 (221)
T ss_dssp CCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHT-------T-------SCCSCHHHHHTSTTCCHHHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhC-------C-------CchHHHHHHHhCCCCcHHHHH
Confidence 8999999999999997653 443 399999999999986310 0 122457899999999999999
Q ss_pred HHH-HHhCCCCccccchHHHHHHHHhhcc
Q 016856 328 NVL-VCIGFYHVIPTDSETIRHLKQVHAR 355 (381)
Q Consensus 328 ~VL-~~Lg~~dvfPvDt~v~Ril~rly~~ 355 (381)
+|| +++|++ +||+|+|++|+++|+|+.
T Consensus 130 ~il~~~~~~~-~~~vD~~v~Rv~~rl~gl 157 (221)
T 1kea_A 130 AVMCLAFGKK-AAMVDANFVRVINRYFGG 157 (221)
T ss_dssp HHHHHTTCCC-CCCCCHHHHHHHHHHHCG
T ss_pred HHHHHhcCCC-cceecHHHHHHHHHHhCC
Confidence 996 799996 799999999999999764
No 14
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.83 E-value=4.1e-20 Score=183.91 Aligned_cols=87 Identities=25% Similarity=0.443 Sum_probs=75.0
Q ss_pred CCCHHHHhcCCHHHHHHhC-cCc--HHHHHHHHHHHHHHh---CCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHH
Q 016856 252 FPSPRELANLDESFLAKRC-NLG--YRAGRILKLARGIVD---GQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFT 325 (381)
Q Consensus 252 FPTpe~La~~~~e~Lr~~~-g~G--yRAkyI~~lA~~i~~---G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwT 325 (381)
||||++|+++++++|.+.+ +.| .||+||+++|+.+.+ |.+ ++.++.|++|||||+||
T Consensus 68 ~pt~~~la~a~~~~l~~~i~~~G~~~ra~~l~~~a~~~~~~~~g~~-----------------p~~~~~L~~l~GIG~~t 130 (369)
T 3fsp_A 68 FPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKV-----------------PDDPDEFSRLKGVGPYT 130 (369)
T ss_dssp CCSHHHHHTSCHHHHHHTTTTSSCTHHHHHHHHHHHHHHHHHTTCC-----------------CCSHHHHHTSTTCCHHH
T ss_pred CCCHHHHHCCCHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCCC-----------------hhHHHHHhcCCCcCHHH
Confidence 8999999999999998743 345 499999999999986 332 24688999999999999
Q ss_pred HHHHH-HHhCCCCccccchHHHHHHHHhhccC
Q 016856 326 RNNVL-VCIGFYHVIPTDSETIRHLKQVHARN 356 (381)
Q Consensus 326 Ad~VL-~~Lg~~dvfPvDt~v~Ril~rly~~~ 356 (381)
|+||| +++|++ ++|+|+||+|++.|++..+
T Consensus 131 A~~il~~~~~~~-~~~vD~~v~Rv~~rl~~~~ 161 (369)
T 3fsp_A 131 VGAVLSLAYGVP-EPAVDGNVMRVLSRLFLVT 161 (369)
T ss_dssp HHHHHHHHHCCC-CCCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCC-cccccHHHHHHHHHHcCcc
Confidence 99996 899997 7899999999999998754
No 15
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.83 E-value=2.5e-20 Score=172.48 Aligned_cols=91 Identities=19% Similarity=0.376 Sum_probs=70.8
Q ss_pred CCCHHHHhcCCHHHHHHhCcCcH---HHHHHHHHHHHHHhCC-CChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHH
Q 016856 252 FPSPRELANLDESFLAKRCNLGY---RAGRILKLARGIVDGQ-IQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRN 327 (381)
Q Consensus 252 FPTpe~La~~~~e~Lr~~~g~Gy---RAkyI~~lA~~i~~G~-l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd 327 (381)
++++++|. +.|+. +|.|| ||+||+++|+++.++. .+++.+..+ +++++++.|++|||||||||+
T Consensus 64 ~~~~e~l~----~~ir~-~G~g~~~~KA~~l~~~a~~~~~~~~~~l~~~~~~-------~~~~~~~~L~~lpGIG~kTA~ 131 (207)
T 3fhg_A 64 YANEEEIR----NILKS-CKYRFYNLKAKYIIMAREKVYGRLKEEIKPLADE-------DQQLARERLLNIKGIGMQEAS 131 (207)
T ss_dssp TCCHHHHH----HHHHH-TTCTTHHHHHHHHHHHHHHHTTTHHHHHHHHHHH-------CHHHHHHHHTTSTTCCHHHHH
T ss_pred cCCHHHHH----HHHHH-hccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhCC-------CHHHHHHHHHcCCCcCHHHHH
Confidence 45666653 23554 77664 8999999999887542 235666655 888999999999999999999
Q ss_pred HHHHHhCCCCccccchHHHHHHHHhhc
Q 016856 328 NVLVCIGFYHVIPTDSETIRHLKQVHA 354 (381)
Q Consensus 328 ~VL~~Lg~~dvfPvDt~v~Ril~rly~ 354 (381)
|||+.+++.++||+|+|++|++.|++.
T Consensus 132 ~il~~~~~~~~~~vD~~v~Ri~~rlg~ 158 (207)
T 3fhg_A 132 HFLRNVGYFDLAIIDRHIIDFMRRIGA 158 (207)
T ss_dssp HHHHHTTCCSSCCCCHHHHHHHHHTTS
T ss_pred HHHHHhCCCCcceecHHHHHHHHHcCC
Confidence 997323557899999999999999974
No 16
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=99.82 E-value=2.7e-20 Score=180.63 Aligned_cols=97 Identities=28% Similarity=0.404 Sum_probs=77.9
Q ss_pred CCCHHHHhcCCHHHHHHhC-cCcH--HHHHHHHHHHHHHh---CCCChhHHHhhhhhcccCcHHHHHHHHhc-CCccChH
Q 016856 252 FPSPRELANLDESFLAKRC-NLGY--RAGRILKLARGIVD---GQIQLRELEDMCNEASLTAYVKLAEQLSQ-INGFGPF 324 (381)
Q Consensus 252 FPTpe~La~~~~e~Lr~~~-g~Gy--RAkyI~~lA~~i~~---G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~-L~GIGpw 324 (381)
||||++|+++++++|.+.+ +.|| ||+||+++|+.+.+ |.++ +.+++|++ |||||+|
T Consensus 78 fptpe~La~a~~eel~~~ir~lG~~~KA~~L~~~A~~i~~~~~g~~p-----------------~~~~~Ll~~LpGIG~k 140 (287)
T 3n5n_X 78 WPTLQDLASASLEEVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMP-----------------RTAETLQQLLPGVGRY 140 (287)
T ss_dssp CCSHHHHHTSCHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSTTCCC-----------------SSHHHHHHHSTTCCHH
T ss_pred CCCHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc-----------------HHHHHHHHHcCCCCHH
Confidence 8999999999999987743 4554 99999999999986 3321 24788998 9999999
Q ss_pred HHHHHH-HHhCCCCccccchHHHHHHHHhhccC--CChHHHHHHH
Q 016856 325 TRNNVL-VCIGFYHVIPTDSETIRHLKQVHARN--CTSKTVQMIA 366 (381)
Q Consensus 325 TAd~VL-~~Lg~~dvfPvDt~v~Ril~rly~~~--~s~k~i~~~~ 366 (381)
||++|| +++|++ +||+|+||+|++.|++... .++..+++.+
T Consensus 141 TA~~iL~~a~g~p-~~~VDt~V~Rv~~Rlg~i~~~~~~~~~~~~l 184 (287)
T 3n5n_X 141 TAGAIASIAFGQA-TGVVDGNVARVLCRVRAIGADPSSTLVSQQL 184 (287)
T ss_dssp HHHHHHHHHSCCC-CCCCCHHHHHHHHHHTTCCSCTTSHHHHHHH
T ss_pred HHHHHHHHhcCCC-CccccHHHHHHHHHhCCCCCCCChHHHHHHH
Confidence 999996 899997 6899999999999998653 3334444443
No 17
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.77 E-value=9.8e-19 Score=163.67 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=70.8
Q ss_pred HHHHhcCCHHHHHHh---Cc--Cc-HHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHh-cCCccChHHHH
Q 016856 255 PRELANLDESFLAKR---CN--LG-YRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLS-QINGFGPFTRN 327 (381)
Q Consensus 255 pe~La~~~~e~Lr~~---~g--~G-yRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll-~L~GIGpwTAd 327 (381)
|+.|+.+++++|.+. +| +. .||+||+++|+.+ | ++..+..+ +.+++++.|+ ++||||||||+
T Consensus 76 p~~l~~~~~eeL~~~Ir~~G~Rf~~~KA~~I~~~a~~i--g--~l~~~~~~-------~~~~~r~~L~~~l~GVG~kTA~ 144 (219)
T 3n0u_A 76 GKGFVHLPLEELAEKLREVGHRYPQKRAEFIVENRKLL--G--KLKNLVKG-------DPFQSREFLVRNAKGIGWKEAS 144 (219)
T ss_dssp TTHHHHCCHHHHHHHHHHTTCSSHHHHHHHHHHHGGGT--T--THHHHHHS-------CHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHhcchHHHHHHHHHHHHHHHH--H--HHHHHhcC-------CcHHHHHHHHHhCCCCCHHHHH
Confidence 345666776665442 55 32 4999999999987 4 34555555 8899999999 99999999999
Q ss_pred HHHHHhCCCCccccchHHHHHHHHhhc
Q 016856 328 NVLVCIGFYHVIPTDSETIRHLKQVHA 354 (381)
Q Consensus 328 ~VL~~Lg~~dvfPvDt~v~Ril~rly~ 354 (381)
|||+.+|+.++||+|+|++|++.|++.
T Consensus 145 ~vL~~~g~~~~~~VDthv~Ri~~rlg~ 171 (219)
T 3n0u_A 145 HFLRNTGVEDLAILDKHVLRLMKRHGL 171 (219)
T ss_dssp HHHHTTTCCSCCCCCHHHHHHHHHTTS
T ss_pred HHHHHcCCCCeeeecHHHHHHHHHcCC
Confidence 997338888899999999999999974
No 18
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.73 E-value=7.7e-18 Score=157.13 Aligned_cols=88 Identities=20% Similarity=0.212 Sum_probs=65.9
Q ss_pred HHHhcCCHHHHHHh---Cc--Cc-HHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHh-cCCccChHHHHH
Q 016856 256 RELANLDESFLAKR---CN--LG-YRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLS-QINGFGPFTRNN 328 (381)
Q Consensus 256 e~La~~~~e~Lr~~---~g--~G-yRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll-~L~GIGpwTAd~ 328 (381)
+.|+.+++++|.+. +| +- .||+||+++|+ + |.+ ++.+..+ .+.++++++|+ +|||||||||+|
T Consensus 71 ~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~-~--~~l-~~~~~~~------~~~~~~re~Ll~~LpGVG~KTA~~ 140 (214)
T 3fhf_A 71 DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARR-F--KNI-KDIVESF------ENEKVAREFLVRNIKGIGYKEASH 140 (214)
T ss_dssp THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGG-G--CCH-HHHHHHS------SSHHHHHHHHHHHSTTCCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH-h--hHH-HHHhccc------CCcHHHHHHHHHhCCCCCHHHHHH
Confidence 34666676666553 44 32 38999999999 5 322 3444432 26789999999 999999999999
Q ss_pred HH-HHhCCCCccc-cchHHHHHHHHhhcc
Q 016856 329 VL-VCIGFYHVIP-TDSETIRHLKQVHAR 355 (381)
Q Consensus 329 VL-~~Lg~~dvfP-vDt~v~Ril~rly~~ 355 (381)
|| ++ ++ +.|| +|+|++|+++|++..
T Consensus 141 vL~~~-g~-~~~~vVDthv~Ri~~RlG~~ 167 (214)
T 3fhf_A 141 FLRNV-GY-DDVAIIDRHILRELYENNYI 167 (214)
T ss_dssp HHHHT-TC-CSCCCCCHHHHHHHHHTTSS
T ss_pred HHHHc-CC-CCcccCcHHHHHHHHHcCCC
Confidence 97 55 77 6788 999999999999743
No 19
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.72 E-value=2.3e-17 Score=147.76 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=70.4
Q ss_pred CCCCHHHHhcCCHHHHHHhC-cCcH---HHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHH
Q 016856 251 NFPSPRELANLDESFLAKRC-NLGY---RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTR 326 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~-g~Gy---RAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTA 326 (381)
.||||++|+++++++|.+.+ ++|| ||++|+++|+.+.... .+.|++|||||+|||
T Consensus 59 ~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~~---------------------~~~L~~LpGVG~yTA 117 (161)
T 4e9f_A 59 KYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQ---------------------WKYPIELHGIGKYGN 117 (161)
T ss_dssp HSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSC---------------------CSSGGGSTTCCHHHH
T ss_pred HCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCcCCCC---------------------hhhhhcCCCchHHHH
Confidence 49999999999999998854 5673 8999999998654322 357999999999999
Q ss_pred HHHH-HHhCC-CCccccchHHHHHHHHhhcc
Q 016856 327 NNVL-VCIGF-YHVIPTDSETIRHLKQVHAR 355 (381)
Q Consensus 327 d~VL-~~Lg~-~dvfPvDt~v~Ril~rly~~ 355 (381)
|+|+ ||+|. ..++|+|.+++|.+.+++..
T Consensus 118 dav~~F~~~e~~~V~p~D~~l~r~l~wl~~~ 148 (161)
T 4e9f_A 118 DSYRIFCVNEWKQVHPEDHKLNKYHDWLWEN 148 (161)
T ss_dssp HHHHHHTSSCGGGCCCCSHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCCcHHHHHHHHHHHcC
Confidence 9995 89986 46888999999999998754
No 20
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=87.67 E-value=0.35 Score=44.73 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=25.3
Q ss_pred cHHHHHHHHhcCCccChHHHHHHH-HHhCCC
Q 016856 307 AYVKLAEQLSQINGFGPFTRNNVL-VCIGFY 336 (381)
Q Consensus 307 ~~ee~~~~Ll~L~GIGpwTAd~VL-~~Lg~~ 336 (381)
..+++.+.|.+|||||||||.-+. +-|.++
T Consensus 20 ~l~~LI~~l~~LPGIG~KsA~RlA~hLL~~~ 50 (212)
T 3vdp_A 20 SVAKLIEELSKLPGIGPKTAQRLAFFIINMP 50 (212)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 568899999999999999999995 456554
No 21
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=87.62 E-value=0.83 Score=44.64 Aligned_cols=57 Identities=21% Similarity=0.351 Sum_probs=38.3
Q ss_pred HHHHHhCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccCcH-HHHHHHHhcCCccChHHHHHHH
Q 016856 264 SFLAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAY-VKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 264 e~Lr~~~g~GyR-AkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~-ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
++|.++=|.|-+ |+-|.++. ..|.+ ..|..++. +. ......|++++||||+||.-+-
T Consensus 57 ~~l~~LpGIG~~~A~kI~E~l---~tG~~--~~le~l~~-----~~~~~~l~~l~~V~GiGpk~a~~l~ 115 (335)
T 2fmp_A 57 AEAKKLPGVGTKIAEKIDEFL---ATGKL--RKLEKIRQ-----DDTSSSINFLTRVSGIGPSAARKFV 115 (335)
T ss_dssp HHHHTSTTCCHHHHHHHHHHH---HHSSC--HHHHHHHH-----CHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHhcCCCCcHHHHHHHHHHH---HhCCc--HHHHHHHc-----ccchhHHHHHhCCCCCCHHHHHHHH
Confidence 346664478875 55555444 46765 44544422 33 6788999999999999999873
No 22
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=86.39 E-value=0.44 Score=44.52 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=25.1
Q ss_pred cHHHHHHHHhcCCccChHHHHHHH-HHhCCC
Q 016856 307 AYVKLAEQLSQINGFGPFTRNNVL-VCIGFY 336 (381)
Q Consensus 307 ~~ee~~~~Ll~L~GIGpwTAd~VL-~~Lg~~ 336 (381)
+.+++.+.|.+|||||||||.-+. +-|.++
T Consensus 6 ~l~~LI~~l~~LPGIG~KSA~RlA~hLL~~~ 36 (228)
T 1vdd_A 6 SLVSLIRELSRLPGIGPKSAQRLAFHLFEQP 36 (228)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHhHCCCCCHHHHHHHHHHHHcCC
Confidence 457899999999999999999995 456554
No 23
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=84.69 E-value=0.73 Score=45.51 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=36.3
Q ss_pred HHHhCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH
Q 016856 266 LAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 266 Lr~~~g~GyR-AkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
|.++=|.|-+ |+.|.++. ..|.+ ..|..++. .........|++++||||+||.-+-
T Consensus 63 l~~lpGIG~~~A~kI~E~l---~tG~~--~~le~L~~----d~~~~~l~~l~~I~GvG~kta~~l~ 119 (360)
T 2ihm_A 63 LHGLPYFGEHSTRVIQELL---EHGTC--EEVKQVRC----SERYQTMKLFTQVFGVGVKTANRWY 119 (360)
T ss_dssp GTTCTTCCHHHHHHHHHHH---HHSCC--HHHHHHHH----SHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHH---HcCCh--HHHHHHhc----ccchHHHHHHhCCCCCCHHHHHHHH
Confidence 4443377865 55554443 46765 34444311 1556778899999999999999873
No 24
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=84.02 E-value=2.1 Score=39.48 Aligned_cols=22 Identities=14% Similarity=0.365 Sum_probs=18.9
Q ss_pred HHHHhcCCccChHHHHHHHHHh
Q 016856 312 AEQLSQINGFGPFTRNNVLVCI 333 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~L 333 (381)
.+.|.++||||+|||+-|...|
T Consensus 122 ~~~L~~vpGIG~KtA~rIi~el 143 (212)
T 2ztd_A 122 VAALTRVPGIGKRGAERMVLEL 143 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHH
Confidence 4799999999999999995444
No 25
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=83.18 E-value=1.2 Score=46.88 Aligned_cols=93 Identities=13% Similarity=0.180 Sum_probs=52.9
Q ss_pred CCCHHHHhcCCHHHHHHhCcCcHH-HHHHHHHHHHHHhCCCChhHHH-hhhh----------hcc-cCcHHHH----HHH
Q 016856 252 FPSPRELANLDESFLAKRCNLGYR-AGRILKLARGIVDGQIQLRELE-DMCN----------EAS-LTAYVKL----AEQ 314 (381)
Q Consensus 252 FPTpe~La~~~~e~Lr~~~g~GyR-AkyI~~lA~~i~~G~l~Le~L~-~l~~----------~~~-~~~~ee~----~~~ 314 (381)
.-++.+|..++.++|..+-|+|-| |..|.+.-+.- ...+|..+- .+.= .+. -.+.+.+ .++
T Consensus 468 i~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aIe~s--k~~~l~r~l~aLGI~~vG~~~a~~La~~f~sl~~l~~a~~e~ 545 (586)
T 4glx_A 468 VHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKA--KETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEE 545 (586)
T ss_dssp CSSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHH--TBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHHCCHHH
T ss_pred CCCHHHHhCCCHHHHhcccCccHHHHHHHHHHHHHH--cCCCHHHHHHHcCCCchhHHHHHHHHHHcCCHHHHHccCHHH
Confidence 468899999999999875588864 55554332221 112222110 1000 000 0012222 368
Q ss_pred HhcCCccChHHHHHHHHHhCCCCccccchHHHHHHHHhh
Q 016856 315 LSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVH 353 (381)
Q Consensus 315 Ll~L~GIGpwTAd~VL~~Lg~~dvfPvDt~v~Ril~rly 353 (381)
|.+++|||+.+|+.|.--|. |.+.+.++.++.
T Consensus 546 l~~i~giG~~~A~si~~ff~-------~~~n~~~i~~L~ 577 (586)
T 4glx_A 546 LQKVPDVGIVVASHVHNFFA-------EESNRNVISELL 577 (586)
T ss_dssp HTTSTTCCHHHHHHHHHHHH-------SHHHHHHHHHHH
T ss_pred HhcCCCccHHHHHHHHHHHc-------CHHHHHHHHHHH
Confidence 99999999999999963332 356666666664
No 26
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=81.89 E-value=1.1 Score=44.68 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=36.1
Q ss_pred HHHhCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH
Q 016856 266 LAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 266 Lr~~~g~GyR-AkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
|.++=|.|-+ |+.|.+ .+..|.+ ..|..++. .........|++++||||+||.-+-
T Consensus 82 l~~lpGIG~~ia~kI~E---~l~tG~~--~~le~l~~----d~~~~~l~~l~~I~GvGpk~a~~ly 138 (381)
T 1jms_A 82 TEGIPCLGDKVKSIIEG---IIEDGES--SEAKAVLN----DERYKSFKLFTSVFGVGLKTAEKWF 138 (381)
T ss_dssp GTTCSSCCHHHHHHHHH---HHHHSSC--HHHHHHHH----CHHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHH---HHHcCCc--HHHHHHhc----CcchhHHHHHHccCCCCHHHHHHHH
Confidence 4443377875 444443 4446775 34444311 1556778999999999999999873
No 27
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=81.70 E-value=2.4 Score=41.36 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=36.1
Q ss_pred HHHHHhCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH
Q 016856 264 SFLAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 264 e~Lr~~~g~GyR-AkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
++|.++=|.|-+ |+-|.++ +..|.+ ..|..+.. .+. +.+.|++++||||+||.-+-
T Consensus 57 ~~l~~lpGIG~~~A~kI~E~---l~tG~~--~~le~l~~-----~~p-~l~ll~~v~GiG~k~a~~l~ 113 (335)
T 2bcq_A 57 QEACSIPGIGKRMAEKIIEI---LESGHL--RKLDHISE-----SVP-VLELFSNIWGAGTKTAQMWY 113 (335)
T ss_dssp HHHHTSTTCCHHHHHHHHHH---HHSSSC--GGGGGCCT-----THH-HHHHHHTSTTCCHHHHHHHH
T ss_pred HHHhcCCCccHHHHHHHHHH---HHcCCc--hHHHHHhh-----hhH-HHHHHhcCCCcCHHHHHHHH
Confidence 346664478875 5555554 346764 34444411 344 77777899999999999873
No 28
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=81.18 E-value=1 Score=41.61 Aligned_cols=29 Identities=21% Similarity=0.171 Sum_probs=23.8
Q ss_pred cHHHHHHHHhcCCccChHHHHHHHHHhCC
Q 016856 307 AYVKLAEQLSQINGFGPFTRNNVLVCIGF 335 (381)
Q Consensus 307 ~~ee~~~~Ll~L~GIGpwTAd~VL~~Lg~ 335 (381)
+..++.+.|.+++||||++|..||-.++-
T Consensus 82 ~Er~lf~~L~sv~GIGpk~A~~Ils~~~~ 110 (212)
T 2ztd_A 82 ETRDLFLTLLSVSGVGPRLAMAALAVHDA 110 (212)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHHSCH
T ss_pred HHHHHHHHhcCcCCcCHHHHHHHHHhCCH
Confidence 44677889999999999999999855543
No 29
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=80.85 E-value=1.2 Score=35.11 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=23.4
Q ss_pred HHHHHHHhcCCccChHHHHHHHHHhCCC
Q 016856 309 VKLAEQLSQINGFGPFTRNNVLVCIGFY 336 (381)
Q Consensus 309 ee~~~~Ll~L~GIGpwTAd~VL~~Lg~~ 336 (381)
......|..||||||+.+..+|..+|-.
T Consensus 14 ~~~~s~L~~IpGIG~kr~~~LL~~FgSl 41 (84)
T 1z00_B 14 PGPQDFLLKMPGVNAKNCRSLMHHVKNI 41 (84)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHSSCH
T ss_pred ccHHHHHHhCCCCCHHHHHHHHHHcCCH
Confidence 4578899999999999999998666644
No 30
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=80.24 E-value=2.5 Score=43.98 Aligned_cols=70 Identities=21% Similarity=0.322 Sum_probs=42.9
Q ss_pred HHHHhcCCHHHHHHhCcCcHH-HHHHHHHHHHHHhCCCCh-hHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHHHH
Q 016856 255 PRELANLDESFLAKRCNLGYR-AGRILKLARGIVDGQIQL-RELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVC 332 (381)
Q Consensus 255 pe~La~~~~e~Lr~~~g~GyR-AkyI~~lA~~i~~G~l~L-e~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL~~ 332 (381)
.+++.+.+.+.+.++-|.|.+ +.+|..+ +.+|.+.+ +.+.. ...+....|++++||||++|-.++-.
T Consensus 44 i~~~~~~~~~~~~~lp~iG~~~~~~i~~~---v~~g~~~l~~~~~~--------~~~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 44 IEEIAEKGKEALMELPGVGPDLAEKILEF---LRTGKVRKHEELSR--------KVPRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp HHHHHTTCHHHHHTSTTCCHHHHHHHHHH---HHHSSCHHHHHHHH--------HSCHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred hhhHhhcchhHHHhCCCCCHHHHHHHHHH---HHcCcHHHHhhhhh--------hhHHHHHHHhcCCCcCHHHHHHHHHh
Confidence 555555444446663367765 4455444 44677653 22222 22356788999999999999988754
Q ss_pred hCC
Q 016856 333 IGF 335 (381)
Q Consensus 333 Lg~ 335 (381)
||.
T Consensus 113 lg~ 115 (575)
T 3b0x_A 113 LGI 115 (575)
T ss_dssp SCC
T ss_pred cCC
Confidence 544
No 31
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=79.25 E-value=1.2 Score=33.08 Aligned_cols=26 Identities=8% Similarity=0.095 Sum_probs=21.1
Q ss_pred HHHHhcCCccChHHHHHHHHHhCCCC
Q 016856 312 AEQLSQINGFGPFTRNNVLVCIGFYH 337 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~Lg~~d 337 (381)
...|..|||||++.+..+|..+|-.+
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~~ 28 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNIA 28 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHH
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCHH
Confidence 35789999999999999986666543
No 32
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=79.07 E-value=1.3 Score=40.14 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=13.2
Q ss_pred HHHhcCCccChHHHHHHHHHh
Q 016856 313 EQLSQINGFGPFTRNNVLVCI 333 (381)
Q Consensus 313 ~~Ll~L~GIGpwTAd~VL~~L 333 (381)
+.|.++||||+|+|+-|...|
T Consensus 107 ~~L~~vpGIG~K~A~rI~~~l 127 (191)
T 1ixr_A 107 RLLTSASGVGRRLAERIALEL 127 (191)
T ss_dssp HHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHH
Confidence 456677777777777764333
No 33
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=78.06 E-value=2.1 Score=31.68 Aligned_cols=29 Identities=7% Similarity=-0.033 Sum_probs=22.6
Q ss_pred cHHHHHHHHhcCCccChHHHHHHHHHhCC
Q 016856 307 AYVKLAEQLSQINGFGPFTRNNVLVCIGF 335 (381)
Q Consensus 307 ~~ee~~~~Ll~L~GIGpwTAd~VL~~Lg~ 335 (381)
+.+.....|..+||||+++|.-++-.++-
T Consensus 8 ~~~~~~~~L~~i~giG~~~a~~Ll~~fgs 36 (75)
T 1x2i_A 8 LAERQRLIVEGLPHVSATLARRLLKHFGS 36 (75)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCC
Confidence 44556778999999999999998755553
No 34
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=76.93 E-value=1.3 Score=33.37 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=17.7
Q ss_pred HHHHhcCCccChHHHHHHHH
Q 016856 312 AEQLSQINGFGPFTRNNVLV 331 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~ 331 (381)
.+.|.++||||+++|..|+.
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~ 45 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVE 45 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHH
Confidence 46799999999999999974
No 35
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=76.46 E-value=1.7 Score=32.21 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=18.9
Q ss_pred HHHHhcCCccChHHHHHHHHHhC
Q 016856 312 AEQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
.+.|..++|||+++|..+...+.
T Consensus 45 ~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 45 VAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999964444
No 36
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=76.41 E-value=4.7 Score=36.36 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=16.2
Q ss_pred ccCCCCHHHHhcCCHHHHHHhCcCcHH-HHHHHHH
Q 016856 249 IGNFPSPRELANLDESFLAKRCNLGYR-AGRILKL 282 (381)
Q Consensus 249 ~~~FPTpe~La~~~~e~Lr~~~g~GyR-AkyI~~l 282 (381)
.+-|.+.++-.-. ..|...-|.|-| |..|...
T Consensus 59 l~gf~~~~ek~~f--~~L~~v~GIGpk~A~~iL~~ 91 (191)
T 1ixr_A 59 LYGFPDEENLALF--ELLLSVSGVGPKVALALLSA 91 (191)
T ss_dssp EEEESSHHHHHHH--HHHHSSSCCCHHHHHHHHHH
T ss_pred hhccCCHHHHHHH--HHHhcCCCcCHHHHHHHHHh
Confidence 4556666554321 244443467753 6666543
No 37
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=76.00 E-value=1.7 Score=39.72 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=13.8
Q ss_pred HHHhcCCccChHHHHHHH
Q 016856 313 EQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 313 ~~Ll~L~GIGpwTAd~VL 330 (381)
+.|.++||||+|||+-|.
T Consensus 108 ~~L~~vpGIG~K~A~rI~ 125 (203)
T 1cuk_A 108 GALVKLPGIGKKTAERLI 125 (203)
T ss_dssp HHHHTSTTCCHHHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHH
Confidence 467788888888888874
No 38
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=72.91 E-value=2.8 Score=32.61 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCccChHHHHHHHHHhCC
Q 016856 309 VKLAEQLSQINGFGPFTRNNVLVCIGF 335 (381)
Q Consensus 309 ee~~~~Ll~L~GIGpwTAd~VL~~Lg~ 335 (381)
......|..+||||+++|.-++..+|.
T Consensus 15 ~~~~~~L~~IpgIG~~~A~~Ll~~fgs 41 (89)
T 1z00_A 15 SRVTECLTTVKSVNKTDSQTLLTTFGS 41 (89)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHHHTCB
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 345677889999999999999855553
No 39
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=72.89 E-value=6.8 Score=31.06 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHhCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH
Q 016856 255 PRELANLDESFLAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 255 pe~La~~~~e~Lr~~~g~GyR-AkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
+-.|..++.++|...-|+|.+ |+.|.+.-+ ..|.+. + .+.|..++|||+++++.+.
T Consensus 31 ~i~iN~a~~~~L~~ipGIG~~~A~~Il~~r~--~~g~f~--------------s----~edL~~v~Gig~k~~~~l~ 87 (98)
T 2edu_A 31 LDLLNEGSARDLRSLQRIGPKKAQLIVGWRE--LHGPFS--------------Q----VEDLERVEGITGKQMESFL 87 (98)
T ss_dssp HHHHHHSCHHHHHHSTTCCHHHHHHHHHHHH--HHCCCS--------------S----GGGGGGSTTCCHHHHHHHH
T ss_pred CeehhhCCHHHHHHCCCCCHHHHHHHHHHHH--hcCCcC--------------C----HHHHHhCCCCCHHHHHHHH
Confidence 456777888889885588864 666665422 135431 2 2348999999999999985
No 40
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=72.58 E-value=3.1 Score=32.31 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=18.7
Q ss_pred HHHHhcCCccChHHHHHHHHHhC
Q 016856 312 AEQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
.+.|.+++|||+++|..+...+.
T Consensus 50 ~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 50 REDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHH
Confidence 36799999999999999964443
No 41
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=72.17 E-value=9.9 Score=37.35 Aligned_cols=84 Identities=14% Similarity=0.033 Sum_probs=50.1
Q ss_pred HHHHhCcCcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH--HHhCCCCccc-c
Q 016856 265 FLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL--VCIGFYHVIP-T 341 (381)
Q Consensus 265 ~Lr~~~g~GyRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL--~~Lg~~dvfP-v 341 (381)
++.+..|-.||++.-...|..|..-..++.. + ++|.+|||||+++|+.|- ..-|....+- .
T Consensus 29 ~~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~~---~-------------~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L 92 (360)
T 2ihm_A 29 EAAGFEANEGRLLSFSRAASVLKSLPCPVAS---L-------------SQLHGLPYFGEHSTRVIQELLEHGTCEEVKQV 92 (360)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHCSSCCCS---G-------------GGGTTCTTCCHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCcccCC---H-------------HHHhcCCCCCHHHHHHHHHHHHcCChHHHHHH
Confidence 4444456558999899999988864433322 1 249999999999999994 3555543321 1
Q ss_pred ch-HHHHHHHHhhcc-CCChHHHHH
Q 016856 342 DS-ETIRHLKQVHAR-NCTSKTVQM 364 (381)
Q Consensus 342 Dt-~v~Ril~rly~~-~~s~k~i~~ 364 (381)
.. .+.+.+..+... ...++.+++
T Consensus 93 ~~d~~~~~l~~l~~I~GvG~kta~~ 117 (360)
T 2ihm_A 93 RCSERYQTMKLFTQVFGVGVKTANR 117 (360)
T ss_dssp HHSHHHHHHHHHHTSTTCCHHHHHH
T ss_pred hcccchHHHHHHhCCCCCCHHHHHH
Confidence 11 344445555432 244455443
No 42
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=71.96 E-value=9.9 Score=37.71 Aligned_cols=84 Identities=10% Similarity=-0.021 Sum_probs=50.1
Q ss_pred HHHHhCcCcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH--HHhCCCCccc-c
Q 016856 265 FLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL--VCIGFYHVIP-T 341 (381)
Q Consensus 265 ~Lr~~~g~GyRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL--~~Lg~~dvfP-v 341 (381)
++.+..|-.||++.-...|..|..-..++.. + ++|.+|||||+.+|+.|- ..-|....+- .
T Consensus 48 ~~~e~~g~~~rv~AYr~Aa~~l~~l~~~i~~---~-------------~~l~~lpGIG~~ia~kI~E~l~tG~~~~le~l 111 (381)
T 1jms_A 48 ENDELRENEGSCLAFMRASSVLKSLPFPITS---M-------------KDTEGIPCLGDKVKSIIEGIIEDGESSEAKAV 111 (381)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTCSSCCCS---G-------------GGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHhCCccccC---H-------------HHHhcCCCCcHHHHHHHHHHHHcCCcHHHHHH
Confidence 3444456558999999999988864433322 1 249999999999999994 3556543222 1
Q ss_pred ch-HHHHHHHHhhcc-CCChHHHHH
Q 016856 342 DS-ETIRHLKQVHAR-NCTSKTVQM 364 (381)
Q Consensus 342 Dt-~v~Ril~rly~~-~~s~k~i~~ 364 (381)
.. .+.+.+..+... ...++.+++
T Consensus 112 ~~d~~~~~l~~l~~I~GvGpk~a~~ 136 (381)
T 1jms_A 112 LNDERYKSFKLFTSVFGVGLKTAEK 136 (381)
T ss_dssp HHCHHHHHHHHHHTSTTCCHHHHHH
T ss_pred hcCcchhHHHHHHccCCCCHHHHHH
Confidence 11 334444444432 244455443
No 43
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=71.88 E-value=1.7 Score=45.23 Aligned_cols=63 Identities=14% Similarity=0.100 Sum_probs=32.9
Q ss_pred HhcCCHHHHHHhCcCcHH-HHHHHHHHHHHHhCCCCh-hHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHHH
Q 016856 258 LANLDESFLAKRCNLGYR-AGRILKLARGIVDGQIQL-RELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLV 331 (381)
Q Consensus 258 La~~~~e~Lr~~~g~GyR-AkyI~~lA~~i~~G~l~L-e~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL~ 331 (381)
|.....+.+.++-+.|-+ +.+ +.+.+.+|.+.+ +.+.. ...+....|++++||||++|..++-
T Consensus 51 i~~~~~~~~~~lp~iG~~~~~~---i~~~v~~g~~~~~~~~~~--------~~~~~~~~L~~v~GVGpk~A~~i~~ 115 (578)
T 2w9m_A 51 TPELLAREFTGIPKVGKGIAAE---LSDFARSGTFAPLEAAAG--------QLPPGLLDLLGVRGLGPKKIRSLWL 115 (578)
T ss_dssp --------CCSSTTCCHHHHHH---HHHHHHHSSCHHHHHHHH--------HSCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred hhhhhHhhhhhcCCCChhHHHH---HHHHHcCChHHHHHHHhh--------hhHHHHHHHhCCCCcCHHHHHHHHH
Confidence 333333334432256654 333 334455676542 22322 2234678899999999999998874
No 44
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=71.16 E-value=3.3 Score=32.40 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCccChHHHHHHHHHhCC
Q 016856 309 VKLAEQLSQINGFGPFTRNNVLVCIGF 335 (381)
Q Consensus 309 ee~~~~Ll~L~GIGpwTAd~VL~~Lg~ 335 (381)
......|..+||||+++|.-++..+|.
T Consensus 28 ~~~~~~L~~IpgIG~~~A~~Ll~~fgs 54 (91)
T 2a1j_B 28 SRVTECLTTVKSVNKTDSQTLLTTFGS 54 (91)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 445677889999999999998855654
No 45
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=71.10 E-value=6 Score=38.52 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=38.3
Q ss_pred HHHhCcCcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH--HHhCCC
Q 016856 266 LAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL--VCIGFY 336 (381)
Q Consensus 266 Lr~~~g~GyRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL--~~Lg~~ 336 (381)
+.+..|-.||+..-...|..|..-..++. + .++|.+|||||+++|+.|. ..-|..
T Consensus 26 ~~e~~g~~~r~~AYr~Aa~~l~~l~~~i~------------~----~~~l~~lpGIG~~~A~kI~E~l~tG~~ 82 (335)
T 2bcq_A 26 AYSVQGDKWRALGYAKAINALKSFHKPVT------------S----YQEACSIPGIGKRMAEKIIEILESGHL 82 (335)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSCCSCCC------------C----HHHHHTSTTCCHHHHHHHHHHHHSSSC
T ss_pred HHHHcCccHhHHHHHHHHHHHHhCCcccc------------C----HHHHhcCCCccHHHHHHHHHHHHcCCc
Confidence 33434555999999999998886444322 2 2248999999999999994 344443
No 46
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=70.70 E-value=1.7 Score=32.79 Aligned_cols=52 Identities=27% Similarity=0.376 Sum_probs=35.1
Q ss_pred HHHHhcCCHHHHHHhCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH
Q 016856 255 PRELANLDESFLAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 255 pe~La~~~~e~Lr~~~g~GyR-AkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
+-+|..++.++|...-|.|.+ |+.|.. .. . .. + .++|.+++|||+++++-+.
T Consensus 18 ~idiN~a~~~~L~~ipGIG~~~A~~Il~-------~r-~---~~---------s----~~eL~~v~Gig~k~~~~i~ 70 (75)
T 2duy_A 18 PVSLNEASLEELMALPGIGPVLARRIVE-------GR-P---YA---------R----VEDLLKVKGIGPATLERLR 70 (75)
T ss_dssp SEETTTCCHHHHTTSTTCCHHHHHHHHH-------TC-C---CS---------S----GGGGGGSTTCCHHHHHHHG
T ss_pred ccChhhCCHHHHHhCCCCCHHHHHHHHH-------Hc-c---cC---------C----HHHHHhCCCCCHHHHHHHH
Confidence 456667788888875588864 554443 22 1 11 1 3578899999999998874
No 47
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=70.22 E-value=3 Score=31.66 Aligned_cols=22 Identities=9% Similarity=0.317 Sum_probs=18.0
Q ss_pred HHHHhcCCccChHHHHHHHHHh
Q 016856 312 AEQLSQINGFGPFTRNNVLVCI 333 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~L 333 (381)
.++|.+++|||+++|+.|...+
T Consensus 55 ~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 55 VEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp HHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 4579999999999999986433
No 48
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H helix, HHH motif, three helix bundle, methanopyrus kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP: a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB: 2csd_A
Probab=69.99 E-value=8.3 Score=37.24 Aligned_cols=50 Identities=18% Similarity=0.218 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHHHHhCCCCc
Q 016856 281 KLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHV 338 (381)
Q Consensus 281 ~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL~~Lg~~dv 338 (381)
.+-++..+|.++-+..+. ..+--..+|++-.|||+|||+-+|.+||.|+.
T Consensus 387 eiermyeegrlseeayra--------aveiqlaeltkkegvgrktaerllrafgnper 436 (519)
T 2csb_A 387 EIERMYEEGRLSEEAYRA--------AVEIQLAELTKKEGVGRKTAERLLRAFGNPER 436 (519)
T ss_dssp HHHHHHHHTSSCHHHHHH--------HHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHcccccHHHHHH--------HHHHHHHHHhhhcccchhHHHHHHHHhCCHHH
Confidence 334445566665544432 22334578899999999999999999998753
No 49
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=69.97 E-value=5.7 Score=42.44 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=49.6
Q ss_pred CCHHHHhcCCHHHHHHhCcCcHH-HHHHHHHH---------HHHHh------CC----------CChhHHHhhhhhcccC
Q 016856 253 PSPRELANLDESFLAKRCNLGYR-AGRILKLA---------RGIVD------GQ----------IQLRELEDMCNEASLT 306 (381)
Q Consensus 253 PTpe~La~~~~e~Lr~~~g~GyR-AkyI~~lA---------~~i~~------G~----------l~Le~L~~l~~~~~~~ 306 (381)
-++.+|..++.++|..+-|+|-| ++.|.+-. +.+.. |+ -+++.|.+.
T Consensus 469 ~~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fgsl~~l~~A------- 541 (671)
T 2owo_A 469 HTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAA------- 541 (671)
T ss_dssp SSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHTC-------
T ss_pred CCHHHHHhhCHHHhhcccccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcCCHHHHHhC-------
Confidence 58888888888888875578865 55555432 22221 10 012222211
Q ss_pred cHHHHHHHHhcCCccChHHHHHHHHHhCCCCccccchHHHHHHHHh
Q 016856 307 AYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQV 352 (381)
Q Consensus 307 ~~ee~~~~Ll~L~GIGpwTAd~VL~~Lg~~dvfPvDt~v~Ril~rl 352 (381)
..++|.+++|||+++|+.|.-.|.. .+.+..+.++
T Consensus 542 ----s~eeL~~i~GIG~~~A~sI~~ff~~-------~~~~~~i~~L 576 (671)
T 2owo_A 542 ----SIEELQKVPDVGIVVASHVHNFFAE-------ESNRNVISEL 576 (671)
T ss_dssp ----CHHHHTTSTTCCHHHHHHHHHHHTC-------HHHHHHHHHH
T ss_pred ----CHHHHhhcCCCCHHHHHHHHHHHHh-------HHHHHHHHHH
Confidence 2468999999999999999643432 3445555544
No 50
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=68.09 E-value=2.9 Score=32.74 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=19.0
Q ss_pred HHHHhcCCccChHHHHHHHHHhC
Q 016856 312 AEQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
.++|.+++|||+++|+.|+..+.
T Consensus 63 ~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 63 REDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 36799999999999999964444
No 51
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=65.33 E-value=2.9 Score=31.71 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=19.9
Q ss_pred HHHHHHhcCCccChHHHHHHHHHhCC
Q 016856 310 KLAEQLSQINGFGPFTRNNVLVCIGF 335 (381)
Q Consensus 310 e~~~~Ll~L~GIGpwTAd~VL~~Lg~ 335 (381)
.....|..+||||+++|.-++-.++-
T Consensus 21 ~~~~~L~~I~gIG~~~A~~Ll~~fgs 46 (78)
T 1kft_A 21 MNTSSLETIEGVGPKRRQMLLKYMGG 46 (78)
T ss_dssp --CCGGGGCTTCSSSHHHHHHHHHSC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 34567899999999999999855654
No 52
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=64.05 E-value=2.5 Score=34.30 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=40.5
Q ss_pred CCCHHHHhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH
Q 016856 252 FPSPRELANLDESFLAKRCNLGY-RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 252 FPTpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
++.+=.|-.++.++|..+-|.|. +|+.|.. .|.+. + .++|+.++|||+++.+-+.
T Consensus 14 ~~~~vdiNtAs~~eL~~lpGIG~~~A~~IV~------~GpF~--------------s----~edL~~V~Gig~~~~e~l~ 69 (97)
T 3arc_U 14 YGEKIDLNNTNIAAFIQYRGLYPTLAKLIVK------NAPYE--------------S----VEDVLNIPGLTERQKQILR 69 (97)
T ss_dssp GGTSEETTTSCGGGGGGSTTCTTHHHHHHHH------HCCCS--------------S----GGGGGGCTTCCHHHHHHHH
T ss_pred cCCceeCCcCCHHHHhHCCCCCHHHHHHHHH------cCCCC--------------C----HHHHHhccCCCHHHHHHHH
Confidence 44555677788888887558885 6877766 46542 2 4688999999999988884
No 53
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=63.28 E-value=2.5 Score=36.42 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=37.0
Q ss_pred HHHHhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHH
Q 016856 255 PRELANLDESFLAKRCNLGY-RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNV 329 (381)
Q Consensus 255 pe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~V 329 (381)
.=.|-.++.++|.++-|.|- +|+.|. .+|... + .++|+.++|||+++-+.+
T Consensus 54 kIniNtA~~~eL~~LpGiGp~~A~~II------~~GpF~--------------s----vedL~~V~GIg~k~~e~l 105 (134)
T 1s5l_U 54 KIDLNNTNIAAFIQYRGLYPTLAKLIV------KNAPYE--------------S----VEDVLNIPGLTERQKQIL 105 (134)
T ss_dssp SEETTTSCGGGGGGSTTCTHHHHHHHH------HTCCCS--------------S----GGGGGGCTTCCHHHHHHH
T ss_pred eeeCcccCHHHHHHCCCCCHHHHHHHH------HcCCCC--------------C----HHHHHhCCCCCHHHHHHH
Confidence 34456678888887458885 687776 366542 2 468999999999987777
No 54
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=63.11 E-value=7.2 Score=35.46 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=17.0
Q ss_pred ccCCCCHHHHhcCCHHHHHHhCcCcHH-HHHHHH
Q 016856 249 IGNFPSPRELANLDESFLAKRCNLGYR-AGRILK 281 (381)
Q Consensus 249 ~~~FPTpe~La~~~~e~Lr~~~g~GyR-AkyI~~ 281 (381)
.|-|-+.++-.-. ..|...-|.|-| |..|..
T Consensus 60 l~gf~~~~ek~~f--~~L~~V~GIGpk~A~~iL~ 91 (203)
T 1cuk_A 60 LYGFNNKQERTLF--KELIKTNGVGPKLALAILS 91 (203)
T ss_dssp EEEESSHHHHHHH--HHHHHSSSCCHHHHHHHHH
T ss_pred hhccCCHHHHHHH--HHHhcCCCcCHHHHHHHHh
Confidence 4557666654321 245554578864 666654
No 55
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=62.78 E-value=6.6 Score=41.98 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=43.8
Q ss_pred CCHHHHhcCCHHHHHHhCcCcHH-HHHHHHH---------HHHHHh----------------CCCChhHHHhhhhhcccC
Q 016856 253 PSPRELANLDESFLAKRCNLGYR-AGRILKL---------ARGIVD----------------GQIQLRELEDMCNEASLT 306 (381)
Q Consensus 253 PTpe~La~~~~e~Lr~~~g~GyR-AkyI~~l---------A~~i~~----------------G~l~Le~L~~l~~~~~~~ 306 (381)
-++.+|..+..++|.++-|+|-| ++.|.+- .+.+.. .--+++.+.+.
T Consensus 464 ~~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~aIe~sk~~~l~R~L~alGI~~VG~~~Ak~La~~Fgsl~~l~~A------- 536 (667)
T 1dgs_A 464 RDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFGTMDRLLEA------- 536 (667)
T ss_dssp SSGGGGGGGCCHHHHTTSSCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTSBHHHHTTC-------
T ss_pred CCHHHHHhcCHHHHhcccccchhhHHHHHHHHHHHhcCcHHHhhHhhccCCccHHHHHHHHHHcCCHHHHHhC-------
Confidence 47888888888888875577753 5555543 222221 11122222221
Q ss_pred cHHHHHHHHhcCCccChHHHHHHHHHhC
Q 016856 307 AYVKLAEQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 307 ~~ee~~~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
+ .++|.+++|||+++|+.|...|+
T Consensus 537 s----~eeL~~I~GIG~~~A~sI~~ff~ 560 (667)
T 1dgs_A 537 S----LEELIEVEEVGELTARAILETLK 560 (667)
T ss_dssp C----HHHHHTSTTCCHHHHHHHHHHHH
T ss_pred C----HHHHHhccCcCHHHHHHHHHHHh
Confidence 2 46899999999999999964343
No 56
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=59.97 E-value=15 Score=35.76 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH--HHhCCC
Q 016856 272 LGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL--VCIGFY 336 (381)
Q Consensus 272 ~GyRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL--~~Lg~~ 336 (381)
-.||+..-...|..|..-..++. + ..+|.+|||||+++|+.|- ..-|..
T Consensus 32 ~~~rv~AYr~Aa~~l~~l~~~i~------------~----~~~l~~LpGIG~~~A~kI~E~l~tG~~ 82 (335)
T 2fmp_A 32 AIHKYNAYRKAASVIAKYPHKIK------------S----GAEAKKLPGVGTKIAEKIDEFLATGKL 82 (335)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCC------------C----HHHHHTSTTCCHHHHHHHHHHHHHSSC
T ss_pred CcHHHHHHHHHHHHHHhCCcccc------------C----HHHHhcCCCCcHHHHHHHHHHHHhCCc
Confidence 44899999999998886443322 2 1248999999999999994 345543
No 57
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=58.91 E-value=5.1 Score=31.82 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=17.0
Q ss_pred HHHHhcCCccChHHHHHHH
Q 016856 312 AEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL 330 (381)
.+.|.+|||||+++|..|+
T Consensus 39 ~~~L~~ipGIG~~~A~~Il 57 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIV 57 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHH
Confidence 3578999999999999997
No 58
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=58.65 E-value=1e+02 Score=27.68 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=49.1
Q ss_pred CHHHHhcCCHHHHHHhCc------CcHHHHHHHHHHHHHHh-----CCCChhHHHhhhh--------------hcccCcH
Q 016856 254 SPRELANLDESFLAKRCN------LGYRAGRILKLARGIVD-----GQIQLRELEDMCN--------------EASLTAY 308 (381)
Q Consensus 254 Tpe~La~~~~e~Lr~~~g------~GyRAkyI~~lA~~i~~-----G~l~Le~L~~l~~--------------~~~~~~~ 308 (381)
+|+.+|..+++++.+++. ...|.+.++.=|+++.+ |.++ +.|....+ +++.+-.
T Consensus 64 D~~~VA~~~e~dve~Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~-~ylW~fv~~~p~~~~~~~~~~vp~~t~~S 142 (186)
T 2jg6_A 64 EPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFS-KFLWSYVNGKPKDLQYEHASDRITVDDTA 142 (186)
T ss_dssp CHHHHTTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHH-HHHHGGGTTSCEECCCCSGGGCCSCCHHH
T ss_pred CHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHH-HHHHhcCCCCCccCCccchhhcCCCCHHH
Confidence 599999999998887542 23477777777777763 3221 22222211 0000112
Q ss_pred HHHHHHHh--cCCccChHHHHHHHHHhCC
Q 016856 309 VKLAEQLS--QINGFGPFTRNNVLVCIGF 335 (381)
Q Consensus 309 ee~~~~Ll--~L~GIGpwTAd~VL~~Lg~ 335 (381)
+.+-+.|. .++=|||-|+-.+|.+.|.
T Consensus 143 ~~lsKdLKkrGFkFvGpt~~YafmQA~G~ 171 (186)
T 2jg6_A 143 TQLSKDLKQYGFKFLGPVTVFSFLEAAGL 171 (186)
T ss_dssp HHHHHHHHTTTCCSCCHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCeeechHHHHHHHHHhcc
Confidence 34556675 4999999998887767664
No 59
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=58.37 E-value=13 Score=38.64 Aligned_cols=38 Identities=11% Similarity=0.237 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhcCCccchHhHHHHHHHhHHHHhhh
Q 016856 66 EQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEE 103 (381)
Q Consensus 66 ~~~~~i~~~v~r~l~Ld~d~~~~~~~f~~~~~~~~~~~ 103 (381)
.+...++..+.+++.+..+++.-++.|.+........+
T Consensus 4 ~~i~~~l~~~a~~~e~~g~~~~r~~aYr~Aa~~l~~~~ 41 (575)
T 3b0x_A 4 QELARIFEEIGLMSEFLGDNPFRVRAYHQAARTLYDLD 41 (575)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCC
Confidence 46677888889999888876666777777655444443
No 60
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=57.51 E-value=3.9 Score=35.23 Aligned_cols=19 Identities=16% Similarity=0.217 Sum_probs=17.4
Q ss_pred HHHHhcCCccChHHHHHHH
Q 016856 312 AEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL 330 (381)
.++|.+||||||+.|.-|.
T Consensus 62 ~~eL~~LpGiGp~~A~~II 80 (134)
T 1s5l_U 62 IAAFIQYRGLYPTLAKLIV 80 (134)
T ss_dssp GGGGGGSTTCTHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHH
Confidence 4689999999999999997
No 61
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=57.34 E-value=3.8 Score=33.23 Aligned_cols=20 Identities=15% Similarity=0.178 Sum_probs=17.6
Q ss_pred HHHHhcCCccChHHHHHHHH
Q 016856 312 AEQLSQINGFGPFTRNNVLV 331 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~ 331 (381)
.++|.+|||||+..|..|+-
T Consensus 25 ~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 25 IAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp GGGGGGSTTCTTHHHHHHHH
T ss_pred HHHHhHCCCCCHHHHHHHHH
Confidence 36899999999999999963
No 62
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=55.40 E-value=6.1 Score=31.33 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHH
Q 016856 274 YRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNV 329 (381)
Q Consensus 274 yRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~V 329 (381)
.++......++.+..-.+.+.. -+++..|+|||+++++.+
T Consensus 35 k~~~~Y~KA~~sLk~~P~~i~s----------------~~e~~~L~giG~ki~~~L 74 (87)
T 2kp7_A 35 HTRFVFQKALRSLQRYPLPLRS----------------GKEAKILQHFGDRLCRML 74 (87)
T ss_dssp TTHHHHHHHHHHHHHCCSCCCS----------------HHHHHTCTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCC----------------HHHHHHhhcccHHHHHHH
Confidence 3455555666666665554332 246789999999999988
No 63
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=54.53 E-value=15 Score=38.15 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=32.7
Q ss_pred HHHHhCcCcHH-HHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHHH
Q 016856 265 FLAKRCNLGYR-AGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLV 331 (381)
Q Consensus 265 ~Lr~~~g~GyR-AkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL~ 331 (381)
.|.+.-|+|-| |..|.. .|-.+++.|.+. -....|.++||||+|||+-|+.
T Consensus 98 ~L~~v~GVGpk~A~~i~~------~G~~s~edL~~a----------~~~~~L~~~~GiG~Ktaq~I~~ 149 (578)
T 2w9m_A 98 DLLGVRGLGPKKIRSLWL------AGIDSLERLREA----------AESGELAGLKGFGAKSAATILE 149 (578)
T ss_dssp HHTTSTTCCHHHHHHHHH------TTCCSHHHHHHH----------HHHTTTTTSTTCCHHHHHHHHH
T ss_pred HHhCCCCcCHHHHHHHHH------cCCCCHHHHHHH----------HhhCccccCCCCCHHHHHHHHH
Confidence 34443488875 555543 355666666542 0123789999999999999943
No 64
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=53.05 E-value=5.4 Score=36.64 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=17.1
Q ss_pred HHHHhcCCccChHHHHHHH
Q 016856 312 AEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL 330 (381)
.++|..|||||+++|..|+
T Consensus 131 ~~eL~~LpGIG~k~A~~II 149 (205)
T 2i5h_A 131 MHQLELLPGVGKKMMWAII 149 (205)
T ss_dssp SBGGGGSTTCCHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHH
Confidence 4588999999999999996
No 65
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=50.63 E-value=20 Score=26.96 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=30.9
Q ss_pred CCCCHHHHhcCCHHHHHHhCcCcH-HHHHHHHHHHH
Q 016856 251 NFPSPRELANLDESFLAKRCNLGY-RAGRILKLARG 285 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~ 285 (381)
-|-|.++|+.++.++|....|++. ||..|+..|+.
T Consensus 27 Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 27 GVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp TCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 478999999999999998677775 89999999986
No 66
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=49.87 E-value=9.5 Score=39.06 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=33.8
Q ss_pred cccCCCCHHHHhcCCHHHHHHhCcCc-HHHHHHHHHHHHHHhCCCChhHHHhhh-------h-------------hcccC
Q 016856 248 RIGNFPSPRELANLDESFLAKRCNLG-YRAGRILKLARGIVDGQIQLRELEDMC-------N-------------EASLT 306 (381)
Q Consensus 248 ~~~~FPTpe~La~~~~e~Lr~~~g~G-yRAkyI~~lA~~i~~G~l~Le~L~~l~-------~-------------~~~~~ 306 (381)
....|-+..++..+++++|++ +|+. .+...|+++-+.+.+| .+++.-..+- + +..+.
T Consensus 534 lkr~ygs~savr~~pv~elre-lg~sd~~ia~ikgip~~~~~~-~~~e~a~~l~er~~~~~~~~~~~~~~~l~~~g~~~~ 611 (685)
T 4gfj_A 534 LKRKYGSASAVRRLPVEELRE-LGFSDDEIAEIKGIPKKLREA-FDLETAAELYERYGSLKEIGRRLSYDDLLELGATPK 611 (685)
T ss_dssp HHHHSSCHHHHHHSCHHHHHT-TSCCHHHHHHHHTCCHHHHHH-SCHHHHHHHHHHHSSSTGGGGSCGGGCCSSSCCGGG
T ss_pred HHHhhccHHHHHhccHHHHHH-cCCchhhHHHhcCCcHHHHhh-cCHHHHHHHHHHhccHHHHhhcCCHHHHhccCCCHH
Confidence 346788999999999999998 6765 4567777776666553 2332211110 0 00000
Q ss_pred c----HHHHHHHHhcCCccChHHHHHHHHHhCC
Q 016856 307 A----YVKLAEQLSQINGFGPFTRNNVLVCIGF 335 (381)
Q Consensus 307 ~----~ee~~~~Ll~L~GIGpwTAd~VL~~Lg~ 335 (381)
- -+-..+.|+.++||||+.|+-++-.++.
T Consensus 612 ~~~eik~p~~k~ll~~~gv~p~la~r~~e~~~~ 644 (685)
T 4gfj_A 612 AAAEIKGPEFKFLLNIEGVGPKLAERILEAVDY 644 (685)
T ss_dssp C--------------------------------
T ss_pred HHHHhcChhHHHhhcccCCCHHHHHHHHHHhCC
Confidence 1 1234689999999999999999755554
No 67
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=43.95 E-value=17 Score=32.63 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=21.2
Q ss_pred HHHHHHhcCCccChHHHHHHHHHhCCC
Q 016856 310 KLAEQLSQINGFGPFTRNNVLVCIGFY 336 (381)
Q Consensus 310 e~~~~Ll~L~GIGpwTAd~VL~~Lg~~ 336 (381)
.....|..+||||+++|..++-.+|-.
T Consensus 159 ~~~~~L~~i~gVg~~~a~~Ll~~fgs~ 185 (219)
T 2bgw_A 159 WQLYILQSFPGIGRRTAERILERFGSL 185 (219)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHHSSH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHcCCH
Confidence 345578899999999999998666643
No 68
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=41.23 E-value=17 Score=32.62 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=18.0
Q ss_pred HHHhcCCccChHHHHHHHHHhC
Q 016856 313 EQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 313 ~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
++|.+++|||+++|+.+...++
T Consensus 194 e~L~~v~GiG~~~a~~i~~~~~ 215 (219)
T 2bgw_A 194 AEISKVEGIGEKRAEEIKKILM 215 (219)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHhhCCCCCHHHHHHHHHHHh
Confidence 4789999999999999964443
No 69
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=39.64 E-value=20 Score=29.79 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCccChHHHHHHHHHhCC-CCccc---cchHHHHHHHHh
Q 016856 309 VKLAEQLSQINGFGPFTRNNVLVCIGF-YHVIP---TDSETIRHLKQV 352 (381)
Q Consensus 309 ee~~~~Ll~L~GIGpwTAd~VL~~Lg~-~dvfP---vDt~v~Ril~rl 352 (381)
..+.-.|+.|.|||+.+|..|+..+|- ++.-. .|-.+.++...+
T Consensus 12 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 12 KHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHH
T ss_pred CEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHH
Confidence 345678999999999999999854443 23222 345566555544
No 70
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=35.01 E-value=24 Score=32.63 Aligned_cols=28 Identities=21% Similarity=0.487 Sum_probs=22.2
Q ss_pred HHHHHhcCCccChHHHHHHHHHhCCCCc
Q 016856 311 LAEQLSQINGFGPFTRNNVLVCIGFYHV 338 (381)
Q Consensus 311 ~~~~Ll~L~GIGpwTAd~VL~~Lg~~dv 338 (381)
....|..|||||+++|.-+|..||-.+.
T Consensus 166 ~~s~LdgIpGIG~k~ak~Ll~~FgSl~~ 193 (220)
T 2nrt_A 166 LRSVLDNVPGIGPIRKKKLIEHFGSLEN 193 (220)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHCSHHH
T ss_pred ccccccCCCCcCHHHHHHHHHHcCCHHH
Confidence 4567899999999999999866665443
No 71
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=34.82 E-value=25 Score=30.70 Aligned_cols=43 Identities=21% Similarity=0.135 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCccChHHHHHHHHHhCC-CCccc---cchHHHHHHHH
Q 016856 309 VKLAEQLSQINGFGPFTRNNVLVCIGF-YHVIP---TDSETIRHLKQ 351 (381)
Q Consensus 309 ee~~~~Ll~L~GIGpwTAd~VL~~Lg~-~dvfP---vDt~v~Ril~r 351 (381)
..+.-.|+.|+|||+.+|..|+..+|- ++.-. .|-.+.++..-
T Consensus 24 k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~ 70 (152)
T 3iz6_M 24 QKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAV 70 (152)
T ss_dssp SBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHH
T ss_pred cEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHH
Confidence 346779999999999999999854443 22222 34455555443
No 72
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.66 E-value=25 Score=30.57 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCccChHHHHHHHHHhC
Q 016856 309 VKLAEQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 309 ee~~~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
..+.-.|+.|.|||+.+|..|+..+|
T Consensus 19 k~v~~aLt~I~GIG~~~A~~I~~~~g 44 (148)
T 3j20_O 19 KQLRWALTAIKGIGINFATMVCRVAG 44 (148)
T ss_dssp SCHHHHHHHSTTCCHHHHHHHHHHHT
T ss_pred CEehhhhhhccCcCHHHHHHHHHHhC
Confidence 34667999999999999999985444
No 73
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=33.48 E-value=8.9 Score=35.84 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHhcCCccChHHHHHHHH-HhCCCCcc
Q 016856 312 AEQLSQINGFGPFTRNNVLV-CIGFYHVI 339 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~-~Lg~~dvf 339 (381)
...|.+|+||||++|..++- +++..+.+
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~gf~sve~L 42 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREAGFESVEDV 42 (241)
T ss_dssp -----------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHcCCCCHHHH
Confidence 45788999999999988873 34443333
No 74
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=32.47 E-value=24 Score=30.66 Aligned_cols=41 Identities=27% Similarity=0.241 Sum_probs=26.9
Q ss_pred HHHHHHhcCCccChHHHHHHHHHhCC-CCccc---cchHHHHHHH
Q 016856 310 KLAEQLSQINGFGPFTRNNVLVCIGF-YHVIP---TDSETIRHLK 350 (381)
Q Consensus 310 e~~~~Ll~L~GIGpwTAd~VL~~Lg~-~dvfP---vDt~v~Ril~ 350 (381)
.+.-.|+.|+|||+.+|..|+..+|- ++.-. .|-.+.++..
T Consensus 27 ~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~ 71 (146)
T 3u5c_S 27 KIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQ 71 (146)
T ss_dssp CTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHH
T ss_pred chHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHH
Confidence 34568999999999999999854443 22222 3445555544
No 75
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=30.55 E-value=32 Score=30.15 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=21.2
Q ss_pred HHHHHHhcCCccChHHHHHHHHHhCC
Q 016856 310 KLAEQLSQINGFGPFTRNNVLVCIGF 335 (381)
Q Consensus 310 e~~~~Ll~L~GIGpwTAd~VL~~Lg~ 335 (381)
.+.-.|+.|+|||+.+|..|+..+|-
T Consensus 27 ~v~~aLt~I~GIG~~~A~~I~~~~gi 52 (155)
T 2xzm_M 27 ITPIALTGIRGIGRRFAYIICKVLKI 52 (155)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred EEEEeeecccccCHHHHHHHHHHcCC
Confidence 35679999999999999999854443
No 76
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=30.22 E-value=11 Score=35.25 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHhcCCccChHHHHHHH
Q 016856 312 AEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL 330 (381)
.+.|.+++|||+++|+-|+
T Consensus 47 ~~eL~~v~GIG~ktAe~I~ 65 (241)
T 1vq8_Y 47 QSALADVSGIGNALAARIK 65 (241)
T ss_dssp -------------------
T ss_pred HHHHHhccCCCHHHHHHHH
Confidence 5689999999999999985
No 77
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=29.44 E-value=47 Score=24.17 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=24.9
Q ss_pred ccCCCCHHHHhcCCHHHHHHhCcCcHHHHHHHH
Q 016856 249 IGNFPSPRELANLDESFLAKRCNLGYRAGRILK 281 (381)
Q Consensus 249 ~~~FPTpe~La~~~~e~Lr~~~g~GyRAkyI~~ 281 (381)
...|-|.+.|.+++.|+|.+.+|..-+|+.|..
T Consensus 21 L~~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~ 53 (63)
T 2a1j_A 21 MHHVKNIAELAALSQDELTSILGNAANAKQLYD 53 (63)
T ss_dssp HHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHH
T ss_pred HHHcCCHHHHHHCCHHHHHHHcCchHHHHHHHH
Confidence 456999999999999999986442223776654
No 78
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=29.27 E-value=2.1e+02 Score=22.43 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=47.4
Q ss_pred CHHHHHHhCcCcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHHHHhCCCCcccc
Q 016856 262 DESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPT 341 (381)
Q Consensus 262 ~~e~Lr~~~g~GyRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL~~Lg~~dvfPv 341 (381)
+.++|.+.+|+..+ +|..+-+. . |.-..+.+... -.+.+.+.|. -. ..+..-|...+|+.+.
T Consensus 25 ~~~~lA~~~~~S~~--~l~r~fk~-~-G~s~~~~~~~~-------Rl~~A~~lL~-~~---~~si~eIA~~~Gf~~~--- 86 (120)
T 3mkl_A 25 TLARIASELLMSPS--LLKKKLRE-E-ETSYSQLLTEC-------RMQRALQLIV-IH---GFSIKRVAVSCGYHSV--- 86 (120)
T ss_dssp CHHHHHHHTTCCHH--HHHHHHHH-T-TCCHHHHHHHH-------HHHHHHHHHT-ST---TCCHHHHHHHTTCSCH---
T ss_pred CHHHHHHHHCcCHH--HHHHHHHH-c-CCCHHHHHHHH-------HHHHHHHHHH-cC---CCCHHHHHHHHCCCCH---
Confidence 45556555666654 34444443 2 54444555544 3345555553 22 3455566555666554
Q ss_pred chHHHHHHHHhhccCCChHHHHHHH
Q 016856 342 DSETIRHLKQVHARNCTSKTVQMIA 366 (381)
Q Consensus 342 Dt~v~Ril~rly~~~~s~k~i~~~~ 366 (381)
.|..|.+++++|. +|.+.++..
T Consensus 87 -s~F~r~Fk~~~G~--tP~~yr~~~ 108 (120)
T 3mkl_A 87 -SYFIYVFRNYYGM--TPTEYQERS 108 (120)
T ss_dssp -HHHHHHHHHHHSS--CHHHHHHHC
T ss_pred -HHHHHHHHHHHCc--CHHHHHHHH
Confidence 8999999999984 556555443
No 79
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=28.39 E-value=3.2e+02 Score=24.36 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=49.0
Q ss_pred CHHHHhcCCHHHHHHhCc------CcHHHHHHHHHHHHHHh---CCCChh-HHHhhhh--------------hcccCcHH
Q 016856 254 SPRELANLDESFLAKRCN------LGYRAGRILKLARGIVD---GQIQLR-ELEDMCN--------------EASLTAYV 309 (381)
Q Consensus 254 Tpe~La~~~~e~Lr~~~g------~GyRAkyI~~lA~~i~~---G~l~Le-~L~~l~~--------------~~~~~~~e 309 (381)
+|+.+|..+++++.+++. ...|.+.++.=|+++.+ ..-++. .|....+ +++.+-.+
T Consensus 64 d~~~VA~~~e~~ve~Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e~Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~ 143 (183)
T 2ofk_A 64 DPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASD 143 (183)
T ss_dssp CHHHHHTCCHHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHH
T ss_pred CHHHHcCCCHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhcCCCCCccCCccchhhccCCCHHHH
Confidence 599999999998887542 23477888887887763 111222 2333211 00000123
Q ss_pred HHHHHHh--cCCccChHHHHHHHHHhCC
Q 016856 310 KLAEQLS--QINGFGPFTRNNVLVCIGF 335 (381)
Q Consensus 310 e~~~~Ll--~L~GIGpwTAd~VL~~Lg~ 335 (381)
.+-+.|. .++=|||-|+-..|.+.|.
T Consensus 144 ~lsk~LKkrGfkFvGpT~~yafmQA~G~ 171 (183)
T 2ofk_A 144 ALAKALKKRGFKFVGTTICYSFMQACGL 171 (183)
T ss_dssp HHHHHHHHTTCCSCCHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCeecChHHHHHHHHHcCc
Confidence 4555665 4899999998777766664
No 80
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=27.08 E-value=29 Score=33.17 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=18.6
Q ss_pred HHhcCCccChHHHHHHHHHhCCCC
Q 016856 314 QLSQINGFGPFTRNNVLVCIGFYH 337 (381)
Q Consensus 314 ~Ll~L~GIGpwTAd~VL~~Lg~~d 337 (381)
.+..+||||||||--+|.-+|..+
T Consensus 204 niPGVpGIG~KTA~kLL~~~gsle 227 (290)
T 1exn_A 204 NIRGVEGIGAKRGYNIIREFGNVL 227 (290)
T ss_dssp TBCCCTTCCHHHHHHHHHHHCSHH
T ss_pred CCCCCCcCCHhHHHHHHHHcCCHH
Confidence 566899999999998875555443
No 81
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=26.92 E-value=35 Score=26.01 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=23.2
Q ss_pred CCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH
Q 016856 289 GQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 289 G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
|--.+..|.+. + .+.|++++|+|+++.+-|.
T Consensus 28 gI~Tv~dL~~~-------s----~~dLlki~n~G~kSl~EI~ 58 (73)
T 1z3e_B 28 GINTVQELANK-------T----EEDMMKVRNLGRKSLEEVK 58 (73)
T ss_dssp TCCBHHHHHTS-------C----HHHHHTSTTCCHHHHHHHH
T ss_pred CCCcHHHHHcC-------C----HHHHHHcCCCCHHHHHHHH
Confidence 44445666655 3 4689999999999999884
No 82
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=26.64 E-value=14 Score=34.34 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHhcCCccChHHHHHHHHHhCCCCcc
Q 016856 311 LAEQLSQINGFGPFTRNNVLVCIGFYHVI 339 (381)
Q Consensus 311 ~~~~Ll~L~GIGpwTAd~VL~~Lg~~dvf 339 (381)
....|..|||||+++|.-+|..+|-.+.+
T Consensus 171 ~~s~L~~IpGIG~k~ak~Ll~~FGSl~~i 199 (226)
T 3c65_A 171 FHSVLDDIPGVGEKRKKALLNYFGSVKKM 199 (226)
T ss_dssp -----------------------------
T ss_pred ccccccccCCCCHHHHHHHHHHhCCHHHH
Confidence 45688999999999999998555554433
No 83
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=24.00 E-value=31 Score=29.24 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=20.6
Q ss_pred HHHHHHhcCCccChHHHHHHHHHhC
Q 016856 310 KLAEQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 310 e~~~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
.+.-.|+.|.|||+.+|..|+..+|
T Consensus 14 ~v~~aLt~I~GIG~~~A~~I~~~~g 38 (126)
T 2vqe_M 14 RVDVALTYIYGIGKARAKEALEKTG 38 (126)
T ss_dssp BHHHHHTTSSSCCSHHHHHHTTTTT
T ss_pred EeeeehhccccccHHHHHHHHHHcC
Confidence 4567999999999999999974444
No 84
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=23.70 E-value=51 Score=32.79 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=34.8
Q ss_pred cccCCCCHHHHhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHh
Q 016856 248 RIGNFPSPRELANLDESFLAKRCNLGY-RAGRILKLARGIVD 288 (381)
Q Consensus 248 ~~~~FPTpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~ 288 (381)
....|-|.+.|.+++.|+|.+.-|.|- ||+.|++....+..
T Consensus 331 Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~IregL~r~~~ 372 (377)
T 3c1y_A 331 VVRMFKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKH 372 (377)
T ss_dssp HHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHHHHHHHHhc
Confidence 345699999999999999998669995 89999998887764
No 85
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=22.80 E-value=43 Score=32.84 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.0
Q ss_pred Hh-cCCccChHHHHHHHHHhCCCC
Q 016856 315 LS-QINGFGPFTRNNVLVCIGFYH 337 (381)
Q Consensus 315 Ll-~L~GIGpwTAd~VL~~Lg~~d 337 (381)
+. .+||||+|||--++.-+|-.+
T Consensus 252 ~p~GVpGIG~KtA~kLl~~~gsle 275 (363)
T 3ory_A 252 NPDGFEGIGPKKALQLVKAYGGIE 275 (363)
T ss_dssp BTTCSTTCCHHHHHHHHHHHTSST
T ss_pred CCCCCCCcCHHHHHHHHHHcCCHH
Confidence 35 899999999999886555544
No 86
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=22.73 E-value=40 Score=32.57 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=18.2
Q ss_pred HHh-cCCccChHHHHHHHHHhCCCCcc
Q 016856 314 QLS-QINGFGPFTRNNVLVCIGFYHVI 339 (381)
Q Consensus 314 ~Ll-~L~GIGpwTAd~VL~~Lg~~dvf 339 (381)
.+. .+||||+|||--++..+|..+.+
T Consensus 234 ~~p~Gv~GIG~KtA~kLi~~~gsle~i 260 (346)
T 2izo_A 234 YNPDGIRGIGPERALKIIKKYGKIEKA 260 (346)
T ss_dssp SSTTCSTTCCHHHHHHHHHHSSCC---
T ss_pred CCCCCCCCcCHHHHHHHHHHcCCHHHH
Confidence 455 79999999998887666655543
No 87
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=22.08 E-value=71 Score=24.83 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=26.2
Q ss_pred cccCCCCHHHHhcCCHHHHHHhCcCcHHHHHHHHH
Q 016856 248 RIGNFPSPRELANLDESFLAKRCNLGYRAGRILKL 282 (381)
Q Consensus 248 ~~~~FPTpe~La~~~~e~Lr~~~g~GyRAkyI~~l 282 (381)
....|.+.+.|.++++|+|.+.+|..-+|+.|...
T Consensus 34 LL~~FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~ 68 (84)
T 1z00_B 34 LMHHVKNIAELAALSQDELTSILGNAANAKQLYDF 68 (84)
T ss_dssp HHHHSSCHHHHHHSCHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHCCHHHHHHHhCchHHHHHHHHH
Confidence 35579999999999999999964533336766553
No 88
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=21.66 E-value=41 Score=32.61 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.1
Q ss_pred cCCccChHHHHHHHHH
Q 016856 317 QINGFGPFTRNNVLVC 332 (381)
Q Consensus 317 ~L~GIGpwTAd~VL~~ 332 (381)
.+||||||||--++.-
T Consensus 236 gipGiG~KtA~kll~~ 251 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQK 251 (341)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHH
Confidence 5899999999877643
No 89
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=20.94 E-value=67 Score=26.45 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=32.6
Q ss_pred CCCCHHHHhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHh
Q 016856 251 NFPSPRELANLDESFLAKRCNLGY-RAGRILKLARGIVD 288 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~ 288 (381)
-|-|.+.|+.++.++|.+..|++- ||.-|+..|+.+..
T Consensus 45 G~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~~ 83 (114)
T 1b22_A 45 GFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVP 83 (114)
T ss_dssp CCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHSC
T ss_pred CcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHcc
Confidence 478999999999999998778874 89999999988763
No 90
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=20.64 E-value=21 Score=37.77 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=0.0
Q ss_pred HHHHhcCCccChHHHHHHHHHhC
Q 016856 312 AEQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
.++|.+++|||+++|+.|.-.|.
T Consensus 560 ~eeL~~I~GIG~~~A~sI~~ff~ 582 (615)
T 3sgi_A 560 TDQLAAVEGVGPTIAAAVTEWFA 582 (615)
T ss_dssp -----------------------
T ss_pred HHHHhhCCCCCHHHHHHHHHHHc
Confidence 46899999999999999963343
No 91
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=20.06 E-value=22 Score=37.62 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred hcCCccChHHHHHHHHHhCCCC
Q 016856 316 SQINGFGPFTRNNVLVCIGFYH 337 (381)
Q Consensus 316 l~L~GIGpwTAd~VL~~Lg~~d 337 (381)
+.|||||+++|..++..|+..+
T Consensus 532 LGIp~VG~~~ak~La~~Fgsle 553 (615)
T 3sgi_A 532 LSIRHVGPTAARALATEFGSLD 553 (615)
T ss_dssp ----------------------
T ss_pred cCCCCCCHHHHHHHHHHcCCHH
Confidence 6799999999988865555444
Done!