Query 016856
Match_columns 381
No_of_seqs 267 out of 1439
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 04:55:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016856.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016856hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2noha1 a.96.1.3 (A:136-325) 8 100.0 2.9E-37 2.1E-41 279.8 16.5 167 122-380 1-184 (190)
2 d1mpga1 a.96.1.3 (A:100-282) 3 100.0 8E-36 5.8E-40 269.5 15.0 166 113-381 4-174 (183)
3 d1pu6a_ a.96.1.5 (A:) 3-Methyl 99.9 8.1E-25 5.9E-29 202.2 11.5 143 121-367 27-174 (217)
4 d1keaa_ a.96.1.2 (A:) Thymine- 99.8 8.6E-19 6.2E-23 161.2 15.6 102 251-370 61-175 (217)
5 d2abka_ a.96.1.1 (A:) Endonucl 99.8 3.5E-19 2.5E-23 163.2 12.6 103 251-371 57-168 (211)
6 d1kg2a_ a.96.1.2 (A:) Catalyti 99.8 1.5E-18 1.1E-22 160.0 15.2 88 251-356 58-152 (224)
7 d1orna_ a.96.1.1 (A:) Endonucl 99.8 1.6E-18 1.2E-22 158.9 14.3 103 251-371 58-170 (214)
8 d1rrqa1 a.96.1.2 (A:9-229) Cat 99.7 1.5E-17 1.1E-21 152.9 16.7 87 251-355 56-149 (221)
9 d1ngna_ a.96.1.2 (A:) Mismatch 99.7 1.2E-17 8.9E-22 144.6 12.8 81 252-353 49-135 (144)
10 d1mpga2 d.129.1.2 (A:1-99) 3-M 97.6 4E-05 2.9E-09 61.3 6.6 61 11-90 32-92 (99)
11 d2noha2 d.129.1.2 (A:12-135) 8 97.5 7.7E-05 5.6E-09 61.5 6.5 74 34-120 51-124 (124)
12 d1cuka2 a.60.2.1 (A:65-142) DN 94.6 0.044 3.2E-06 41.3 6.8 20 312-331 43-62 (78)
13 d1ixra1 a.60.2.1 (A:63-135) DN 94.3 0.051 3.7E-06 40.5 6.5 22 312-333 44-65 (73)
14 d1bvsa2 a.60.2.1 (A:64-134) DN 93.7 0.051 3.7E-06 40.2 5.5 22 312-333 43-64 (71)
15 d1bvsa2 a.60.2.1 (A:64-134) DN 90.3 0.064 4.6E-06 39.7 2.4 27 308-334 4-30 (71)
16 d1ixra1 a.60.2.1 (A:63-135) DN 89.8 0.073 5.3E-06 39.6 2.3 28 307-334 4-31 (73)
17 d2bcqa1 a.60.6.1 (A:252-327) D 88.9 0.43 3.1E-05 34.8 6.1 54 266-335 15-70 (76)
18 d1cuka2 a.60.2.1 (A:65-142) DN 88.8 0.088 6.4E-06 39.6 2.1 26 308-333 4-29 (78)
19 d1x2ia1 a.60.2.5 (A:2-69) ATP- 88.6 0.14 9.9E-06 37.0 3.0 23 312-334 41-63 (68)
20 d1vdda_ e.49.1.1 (A:) Recombin 88.4 0.14 9.9E-06 44.9 3.5 31 307-337 6-37 (199)
21 d1kfta_ a.60.2.3 (A:) Excinucl 88.3 0.15 1.1E-05 35.6 3.0 22 312-333 33-54 (56)
22 d2a1ja1 a.60.2.5 (A:837-898) D 85.6 0.23 1.7E-05 35.1 2.7 23 313-335 3-25 (62)
23 d2fmpa1 a.60.6.1 (A:10-91) DNA 81.1 0.98 7.2E-05 33.4 4.9 48 272-335 23-72 (82)
24 d1kfta_ a.60.2.3 (A:) Excinucl 81.1 0.33 2.4E-05 33.7 2.0 22 314-335 3-24 (56)
25 d2bgwa1 a.60.2.5 (A:160-229) D 80.8 0.74 5.4E-05 32.9 3.9 23 314-336 14-36 (70)
26 d2csba3 a.60.2.4 (A:410-464) T 80.6 0.36 2.6E-05 32.7 1.9 25 313-337 2-26 (55)
27 d2fmpa2 a.60.12.1 (A:92-148) D 80.1 0.48 3.5E-05 33.3 2.5 21 310-330 4-24 (57)
28 d2i1qa1 a.60.4.1 (A:5-64) DNA 79.9 1.1 7.7E-05 31.4 4.4 38 251-288 19-57 (60)
29 d1jmsa1 a.60.6.1 (A:148-242) T 79.6 1.4 9.9E-05 33.6 5.3 49 266-330 31-79 (95)
30 d2edua1 a.60.2.7 (A:8-98) KIF2 79.6 1.7 0.00012 32.9 5.8 54 257-330 26-80 (91)
31 d2bgwa1 a.60.2.5 (A:160-229) D 79.5 0.49 3.6E-05 33.9 2.5 23 312-334 44-66 (70)
32 d1jmsa3 a.60.12.1 (A:243-302) 78.4 0.54 4E-05 33.3 2.4 21 310-330 5-25 (60)
33 d1pzna1 a.60.4.1 (A:35-95) DNA 78.3 1.1 7.8E-05 31.3 4.0 38 251-288 21-59 (61)
34 d2bcqa2 a.60.12.1 (A:329-385) 77.7 0.59 4.3E-05 32.9 2.4 22 309-330 4-25 (57)
35 d1dgsa1 a.60.2.2 (A:401-581) N 77.7 0.76 5.5E-05 39.0 3.6 53 283-353 120-172 (181)
36 d2a1jb1 a.60.2.5 (B:219-296) D 75.2 0.82 6E-05 33.4 2.7 25 312-336 50-74 (78)
37 d3bzka1 a.60.2.6 (A:474-563) T 74.0 1.1 8.1E-05 33.8 3.3 53 258-330 29-82 (90)
38 d1x2ia1 a.60.2.5 (A:2-69) ATP- 72.7 1.4 0.0001 31.3 3.5 26 312-337 9-34 (68)
39 d2a1jb1 a.60.2.5 (B:219-296) D 70.6 1.7 0.00012 31.6 3.6 29 307-335 13-41 (78)
40 d1pzna1 a.60.4.1 (A:35-95) DNA 68.9 1.4 0.0001 30.7 2.7 38 283-331 14-52 (61)
41 d2duya1 a.60.2.7 (A:11-75) Unc 65.4 1.7 0.00012 30.8 2.5 19 312-330 16-34 (65)
42 d2i1qa1 a.60.4.1 (A:5-64) DNA 63.0 4.1 0.0003 28.1 4.2 32 289-331 19-50 (60)
43 d1szpa1 a.60.4.1 (A:81-144) DN 62.8 3.4 0.00025 29.1 3.7 38 251-288 23-61 (64)
44 d1a77a1 a.60.7.1 (A:209-316) F 59.3 1.4 0.0001 33.9 1.1 24 316-339 20-43 (108)
45 d2axtu1 a.60.12.2 (U:37-134) P 58.4 1.7 0.00012 33.6 1.4 19 312-330 26-44 (98)
46 d2edua1 a.60.2.7 (A:8-98) KIF2 58.2 2.5 0.00018 31.9 2.4 19 312-330 32-50 (91)
47 d2axtu1 a.60.12.2 (U:37-134) P 57.6 1.1 7.8E-05 34.8 0.1 50 257-330 20-70 (98)
48 d1rxwa1 a.60.7.1 (A:220-324) F 57.1 2.6 0.00019 32.2 2.4 24 314-337 17-40 (105)
49 d3bzka1 a.60.2.6 (A:474-563) T 56.3 2.9 0.00021 31.3 2.5 19 312-330 34-52 (90)
50 d2a1ja1 a.60.2.5 (A:837-898) D 54.8 5.8 0.00042 27.3 3.8 34 249-283 20-54 (62)
51 d1b22a_ a.60.4.1 (A:) DNA repa 53.1 3.9 0.00028 29.4 2.6 38 251-288 30-68 (70)
52 d1xo1a1 a.60.7.1 (A:186-290) T 52.7 2.8 0.00021 32.2 1.9 22 313-334 19-40 (105)
53 d1dgsa1 a.60.2.2 (A:401-581) N 49.9 8.2 0.00059 32.2 4.7 63 253-334 64-128 (181)
54 d2gy9m1 a.156.1.1 (M:1-114) Ri 47.5 5.9 0.00043 30.8 3.1 25 310-334 13-37 (114)
55 d1nkua_ a.96.1.4 (A:) 3-Methyl 47.0 75 0.0054 26.4 13.6 39 113-151 21-59 (187)
56 d1ul1x1 a.60.7.1 (X:218-357) F 45.2 4.7 0.00034 31.8 2.2 21 314-334 17-37 (140)
57 d1b43a1 a.60.7.1 (A:220-339) F 45.1 3.2 0.00024 32.6 1.1 16 316-331 20-35 (120)
58 d1cmwa1 a.60.7.1 (A:174-289) 5 44.4 1.4 0.0001 34.0 -1.2 27 314-340 19-45 (116)
59 d2uubm1 a.156.1.1 (M:2-126) Ri 41.7 7.1 0.00051 30.8 2.7 26 309-334 12-37 (125)
60 d1doqa_ a.60.3.1 (A:) C-termin 37.0 8.6 0.00063 27.3 2.3 44 271-330 14-57 (69)
61 d1szpa1 a.60.4.1 (A:81-144) DN 35.0 16 0.0012 25.4 3.5 33 288-331 22-54 (64)
62 d1gm5a2 b.40.4.9 (A:106-285) R 34.2 6.2 0.00045 32.2 1.3 18 313-330 10-27 (180)
63 d1wuda1 a.60.8.1 (A:530-606) H 28.2 15 0.0011 26.0 2.4 18 312-329 45-62 (77)
64 d2p6ra2 a.289.1.2 (A:489-686) 27.3 44 0.0032 27.9 5.8 66 260-330 85-161 (198)
65 d1b22a_ a.60.4.1 (A:) DNA repa 27.2 37 0.0027 23.8 4.4 51 263-331 10-61 (70)
66 d2e1fa1 a.60.8.1 (A:1142-1235) 21.6 20 0.0014 26.6 2.0 18 312-329 54-71 (94)
No 1
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.9e-37 Score=279.78 Aligned_cols=167 Identities=22% Similarity=0.291 Sum_probs=144.2
Q ss_pred ChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhhhhhcchh
Q 016856 122 TLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSE 201 (381)
Q Consensus 122 ~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (381)
||||+||++|||||++++++.+|.++||+.||+ ++.
T Consensus 1 DPfe~lv~~IisQq~s~~~~~~~~~~L~~~~G~----------------~~~---------------------------- 36 (190)
T d2noha1 1 DPIECLFSFICSSNNNIARITGMVERLCQAFGP----------------RLI---------------------------- 36 (190)
T ss_dssp CHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSC----------------EEE----------------------------
T ss_pred ChHHHHHHHHHHcccCHHHHHHHHHHHHHHHCC----------------Ccc----------------------------
Confidence 799999999999999999999999999999997 221
Q ss_pred hhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCCccccccCCCCHHHHhcCCHHHHHHhCcCcHHHHHHHH
Q 016856 202 DYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILK 281 (381)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPTpe~La~~~~e~Lr~~~g~GyRAkyI~~ 281 (381)
..+|. .+|.||||++|++++++++...+|+++||+||++
T Consensus 37 ----------------------------~~~~~-------------~~~~FP~~~~la~~~~e~~l~~~~~~~ra~~i~~ 75 (190)
T d2noha1 37 ----------------------------QLDDV-------------TYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSA 75 (190)
T ss_dssp ----------------------------EETTE-------------EEECCCCHHHHHSTTHHHHHHHTTCTTHHHHHHH
T ss_pred ----------------------------ccCcc-------------hhhccCCHHHHHHcchHHHHHhcchHHHHHHHHH
Confidence 22322 6789999999999999887777999999999999
Q ss_pred HHHHHHhCCCCh---hHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH-HHhCCCCccccchHHHHHHHHhhccCC
Q 016856 282 LARGIVDGQIQL---RELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRHLKQVHARNC 357 (381)
Q Consensus 282 lA~~i~~G~l~L---e~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL-~~Lg~~dvfPvDt~v~Ril~rly~~~~ 357 (381)
+|+.+.++.... +.+..+ +++++++.|++|||||||||+||| |++|++|+||+|+||+|++.|+|+...
T Consensus 76 ~a~~i~~~~~~~~~l~~l~~~-------~~~~~~~~L~~l~GIG~wTA~~il~~~~~~~d~fpvD~~v~R~~~r~~~~~~ 148 (190)
T d2noha1 76 SARAILEEQGGLAWLQQLRES-------SYEEAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHP 148 (190)
T ss_dssp HHHHHHHTSCSHHHHHHTTTS-------CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCCHHHHHHHHHHHCCCC
T ss_pred HHHHHHHhcccccCHHHhcCC-------CcHHHHHHHHHcCCchHHHHHHHHHHHcCCCCeEeecHHHHHHHHHHhcccC
Confidence 999999877654 444444 899999999999999999999995 799999999999999999999987431
Q ss_pred -----------ChHHHHHHHHHHhccCCCc--cccc
Q 016856 358 -----------TSKTVQMIAESIYGKYAPF--QFLA 380 (381)
Q Consensus 358 -----------s~k~i~~~~~~~~g~~aGw--q~Lf 380 (381)
.++++...+++.||+|+|| +|||
T Consensus 149 ~~~~~k~~~~~~~~~~~~~~~~~~g~y~g~a~~~Lf 184 (190)
T d2noha1 149 TTSQAKGPSPQTNKELGNFFRSLWGPYAGWAAAVLF 184 (190)
T ss_dssp SSSSCSSSCHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred cchhhccccHHHHHHHHHHHHHHhcchhhHHHHHHh
Confidence 1245677778999999999 8887
No 2
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=8e-36 Score=269.51 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=141.7
Q ss_pred CcccccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhh
Q 016856 113 FSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSR 192 (381)
Q Consensus 113 ~ggRv~r~p~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 192 (381)
.|+||++++|+||+||++||+||+++.++.++.++||+.+|+ ++.
T Consensus 4 pGlRi~~~~dpfe~Lv~~Ii~Qqis~~aA~~i~~rl~~~~g~----------------~~~------------------- 48 (183)
T d1mpga1 4 PGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGE----------------RLD------------------- 48 (183)
T ss_dssp TTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCC----------------BCS-------------------
T ss_pred CCCcCCCCCCHHHHHHHHHHhchhhHHHHHHHHHHHHHHhCc----------------ccc-------------------
Confidence 589999999999999999999999999999999999999987 111
Q ss_pred hhhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCCccccccCCCCHHHHhcCCHHHHHHhCcC
Q 016856 193 IAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNL 272 (381)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPTpe~La~~~~e~Lr~~~g~ 272 (381)
+ +..++.||||++|+++++++|+. ||+
T Consensus 49 ---------------------------------------~-------------~~~~~~FPtp~~l~~~~~~~lr~-~Gl 75 (183)
T d1mpga1 49 ---------------------------------------D-------------FPEYICFPTPQRLAAADPQALKA-LGM 75 (183)
T ss_dssp ---------------------------------------S-------------CTTCBCCCCHHHHHTCCHHHHHH-TTS
T ss_pred ---------------------------------------c-------------cccccCCCcHHHHHcCCHHHHHH-cCC
Confidence 0 12578999999999999999998 776
Q ss_pred -cHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH-HHhCCCCccc-cchHHHHHH
Q 016856 273 -GYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIP-TDSETIRHL 349 (381)
Q Consensus 273 -GyRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL-~~Lg~~dvfP-vDt~v~Ril 349 (381)
++|++||+++|+.+.+|.+++... + +++|+++.|++||||||||||||| |+||++|+|| .|+++++.+
T Consensus 76 s~~Ka~~i~~~a~~~~~g~l~~~~~--~-------~~~e~~~~L~~l~GIGpwTAd~illf~lg~~dvfP~~D~~lr~~~ 146 (183)
T d1mpga1 76 PLKRAEALIHLANAALEGTLPMTIP--G-------DVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRF 146 (183)
T ss_dssp CHHHHHHHHHHHHHHHHTCSCSSCC--S-------CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHcCchhhhcc--c-------cHHHHHHHHHHhhcccHHHHHHHHHhhCCCCCccccchHHHHHHh
Confidence 689999999999999999886642 2 788999999999999999999995 8999999999 599999887
Q ss_pred HHhhccCCChHHHHHHHHHHhccCCCc--ccccC
Q 016856 350 KQVHARNCTSKTVQMIAESIYGKYAPF--QFLAY 381 (381)
Q Consensus 350 ~rly~~~~s~k~i~~~~~~~~g~~aGw--q~Lfy 381 (381)
+.+ +++++.+.. +.|+||++| +|||+
T Consensus 147 ~~l-----~~~~~~~~~-~~~~Pyrs~a~~yLW~ 174 (183)
T d1mpga1 147 PGM-----TPAQIRRYA-ERWKPWRSYALLHIWY 174 (183)
T ss_dssp TTC-----CHHHHHHHH-GGGTTCHHHHHHHHHT
T ss_pred hhC-----CHHHHHHHH-HhccCHHHHHHHHHHH
Confidence 644 456665554 567888887 77764
No 3
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}
Probab=99.91 E-value=8.1e-25 Score=202.15 Aligned_cols=143 Identities=19% Similarity=0.196 Sum_probs=117.9
Q ss_pred CChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhhhhhcch
Q 016856 121 PTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASS 200 (381)
Q Consensus 121 p~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (381)
.++||.+|++|++||++|..+.+..++|++.++.
T Consensus 27 ~~pfe~lv~aIL~Qqts~~~a~~a~~~L~~~~~~---------------------------------------------- 60 (217)
T d1pu6a_ 27 ALKFEALLGAVLTQNTKFEAVLKSLENLKNAFIL---------------------------------------------- 60 (217)
T ss_dssp TTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSS----------------------------------------------
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh----------------------------------------------
Confidence 5899999999999999999999888888776432
Q ss_pred hhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCCccccccCCCCHHHHhcCCHHHHHHhC-cCcH---HH
Q 016856 201 EDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRC-NLGY---RA 276 (381)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPTpe~La~~~~e~Lr~~~-g~Gy---RA 276 (381)
....||||++|+++++++|.+.+ +.|+ ||
T Consensus 61 -----------------------------------------------~~~~~~t~~~la~a~~eel~~~ir~~G~~~~KA 93 (217)
T d1pu6a_ 61 -----------------------------------------------ENDDEINLKKIAYIEFSKLAECVRPSGFYNQKA 93 (217)
T ss_dssp -----------------------------------------------CSCHHHHHHHHHHSCHHHHHHHTGGGSCHHHHH
T ss_pred -----------------------------------------------ccccCCCHHHHHCCCHHHHHHHHHHCCCcHHHH
Confidence 12359999999999999998754 3443 89
Q ss_pred HHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH-HHhCCCCccccchHHHHHHHHhhcc
Q 016856 277 GRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRHLKQVHAR 355 (381)
Q Consensus 277 kyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL-~~Lg~~dvfPvDt~v~Ril~rly~~ 355 (381)
+||+++|+.+.++- +.+.++ +.++++++|++|||||+|||+||| ++++++ +||+|+||+|+++|++..
T Consensus 94 ~~i~~~a~~i~~~~---~~~~~~-------~~~~~~~~L~~lpGIG~kTA~~vl~~~~~~~-~~~vD~hv~Rv~~Rlg~~ 162 (217)
T d1pu6a_ 94 KRLIDLSGNILKDF---QSFENF-------KQEVTREWLLDQKGIGKESADAILCYACAKE-VMVVDKYSYLFLKKLGIE 162 (217)
T ss_dssp HHHHHHHHHHHHHH---SSHHHH-------HHHCCHHHHHTSTTCCHHHHHHHHHHTTCCS-CCCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhh---hhcccC-------CcHHHHHHHHHHhhhhhHHHHHHHHHHcCCe-eeecChHHHHHHHHhCCC
Confidence 99999999998732 334455 678899999999999999999996 899985 899999999999999755
Q ss_pred CCChHHHHHHHH
Q 016856 356 NCTSKTVQMIAE 367 (381)
Q Consensus 356 ~~s~k~i~~~~~ 367 (381)
..++++++..+.
T Consensus 163 ~~~~~~~~~~~~ 174 (217)
T d1pu6a_ 163 IEDYDELQHFFE 174 (217)
T ss_dssp CCSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 556676665554
No 4
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=99.78 E-value=8.6e-19 Score=161.24 Aligned_cols=102 Identities=20% Similarity=0.376 Sum_probs=81.1
Q ss_pred CCCCHHHHhcCCHHHHHHhC-cCcH---HHHHHHHHHHHHHh---CCCChhHHHhhhhhcccCcHHHHHHHHhcCCccCh
Q 016856 251 NFPSPRELANLDESFLAKRC-NLGY---RAGRILKLARGIVD---GQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGP 323 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~-g~Gy---RAkyI~~lA~~i~~---G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGp 323 (381)
.|||+++|+++++++|.+.+ +.|| ||++|+++|+.|.+ |.++ +.+++|++|||||+
T Consensus 61 ~~pt~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p-----------------~~~~~L~~LpGVG~ 123 (217)
T d1keaa_ 61 KYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVP-----------------RNRKAILDLPGVGK 123 (217)
T ss_dssp HCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSCC-----------------SCHHHHHTSTTCCH
T ss_pred hcccHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCCcc-----------------hhhHHHHHHHhhhh
Confidence 48999999999999999865 4562 89999999999985 4332 34789999999999
Q ss_pred HHHHHHH-HHhCCCCccccchHHHHHHHHhhccC-----CChHHHHHHHHHHh
Q 016856 324 FTRNNVL-VCIGFYHVIPTDSETIRHLKQVHARN-----CTSKTVQMIAESIY 370 (381)
Q Consensus 324 wTAd~VL-~~Lg~~dvfPvDt~v~Ril~rly~~~-----~s~k~i~~~~~~~~ 370 (381)
|||++|| ++++++ ++++|+|++|++.|+++.. .+.+.+.+.+.+++
T Consensus 124 kTA~~il~~~~~~~-~~~vD~~v~Rv~~R~~~~~~~~~~~~~~~l~~~~~~~~ 175 (217)
T d1keaa_ 124 YTCAAVMCLAFGKK-AAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLV 175 (217)
T ss_dssp HHHHHHHHHTTCCC-CCCCCHHHHHHHHHHHCGGGTTCCTTSHHHHHHHHHHS
T ss_pred hhhHHHHHHhcCCc-ccccccchhhhhhhccccCccccchHHHHHHHHHHHcC
Confidence 9999997 899986 7889999999999997642 23355555554444
No 5
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=99.78 E-value=3.5e-19 Score=163.24 Aligned_cols=103 Identities=19% Similarity=0.267 Sum_probs=84.6
Q ss_pred CCCCHHHHhcCCHHHHHHhC-cCcH---HHHHHHHHHHHHHh---CCCChhHHHhhhhhcccCcHHHHHHHHhcCCccCh
Q 016856 251 NFPSPRELANLDESFLAKRC-NLGY---RAGRILKLARGIVD---GQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGP 323 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~-g~Gy---RAkyI~~lA~~i~~---G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGp 323 (381)
.|||+++++++++++|.+.+ +.|| ||++|+++|+.+.+ |.+ ++.+++|++|||||+
T Consensus 57 ~~~t~~~la~a~~~~l~~~i~~~G~y~~Ka~~l~~~a~~i~~~~~g~~-----------------p~~~~~L~~LpGVG~ 119 (211)
T d2abka_ 57 VANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEV-----------------PEDRAALEALPGVGR 119 (211)
T ss_dssp TCCSHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTTSC-----------------CSCHHHHHHSTTCCH
T ss_pred hccChHHHHhhhHhHhHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCch-----------------hHHHHHHHHHHhhch
Confidence 58999999999999988754 5564 89999999999985 333 234678999999999
Q ss_pred HHHHHHH-HHhCCCCccccchHHHHHHHHhhcc-CCChHHHHHHHHHHhc
Q 016856 324 FTRNNVL-VCIGFYHVIPTDSETIRHLKQVHAR-NCTSKTVQMIAESIYG 371 (381)
Q Consensus 324 wTAd~VL-~~Lg~~dvfPvDt~v~Ril~rly~~-~~s~k~i~~~~~~~~g 371 (381)
+||++|| ++++++ +||+|+||+|++.|++.. ..+++++...+.+.+.
T Consensus 120 ~TA~~Il~~a~~~p-~~~vD~nv~Rv~~R~g~~~~~~~~~~~~~~~~~~p 168 (211)
T d2abka_ 120 KTANVVLNTAFGWP-TIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVP 168 (211)
T ss_dssp HHHHHHHHHHHCCC-CCCCCHHHHHHHHHHCSSCCSSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCc-cccccHHHHHHHHHhccCccchhhHHHHHHhhcCc
Confidence 9999996 899986 799999999999999653 4566777777776654
No 6
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}
Probab=99.77 E-value=1.5e-18 Score=159.95 Aligned_cols=88 Identities=25% Similarity=0.330 Sum_probs=74.6
Q ss_pred CCCCHHHHhcCCHHHHHHhC-cCc--HHHHHHHHHHHHHHh---CCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChH
Q 016856 251 NFPSPRELANLDESFLAKRC-NLG--YRAGRILKLARGIVD---GQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPF 324 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~-g~G--yRAkyI~~lA~~i~~---G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpw 324 (381)
.|||+++|+++++++|.+.+ +.| .||++|+.+|+.+.+ |.++ +.+++|++|||||+|
T Consensus 58 ~~pt~~~la~a~~~~l~~~i~~~g~~~ka~~l~~~~~~i~~~~~g~vp-----------------~~~~~L~~LpGVG~k 120 (224)
T d1kg2a_ 58 RFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFP-----------------ETFEEVAALPGVGRS 120 (224)
T ss_dssp HCSSHHHHHHSCHHHHHHHHTTSCCTHHHHHHHHHHHHHHHHSTTSCC-----------------CSHHHHHTSTTCCHH
T ss_pred HhccHHHHHHhhHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhccCCcc-----------------hHHHHHHHHHhhhhh
Confidence 48999999999999988753 455 489999999999984 4442 346789999999999
Q ss_pred HHHHHH-HHhCCCCccccchHHHHHHHHhhccC
Q 016856 325 TRNNVL-VCIGFYHVIPTDSETIRHLKQVHARN 356 (381)
Q Consensus 325 TAd~VL-~~Lg~~dvfPvDt~v~Ril~rly~~~ 356 (381)
||++|| +++|++ ++++|+||+|++.|+++..
T Consensus 121 TA~~il~~a~~~~-~~~vD~~v~Rv~~Rl~~~~ 152 (224)
T d1kg2a_ 121 TAGAILSLSLGKH-FPILDGNVKRVLARCYAVS 152 (224)
T ss_dssp HHHHHHHHHHCCS-CCCCCHHHHHHHHHHHTCC
T ss_pred hhHHHHHHhhhcc-cccccchHHHHHHHhcccc
Confidence 999997 899986 7889999999999998643
No 7
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=99.77 E-value=1.6e-18 Score=158.90 Aligned_cols=103 Identities=22% Similarity=0.317 Sum_probs=82.6
Q ss_pred CCCCHHHHhcCCHHHHHHhC-cCc---HHHHHHHHHHHHHHh---CCCChhHHHhhhhhcccCcHHHHHHHHhcCCccCh
Q 016856 251 NFPSPRELANLDESFLAKRC-NLG---YRAGRILKLARGIVD---GQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGP 323 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~-g~G---yRAkyI~~lA~~i~~---G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGp 323 (381)
.|||+++++.++++++.+.+ +.| .||++|+.+|+.|.+ |.++ ..+++|++|||||+
T Consensus 58 ~~pt~~~la~~~~~e~~~~i~~~g~y~~ka~~l~~~a~~i~~~~~g~vp-----------------~~~~~L~~LpGVG~ 120 (214)
T d1orna_ 58 KYRTPHDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVP-----------------RDRDELMKLPGVGR 120 (214)
T ss_dssp HCCSHHHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTTSCC-----------------SCHHHHTTSTTCCH
T ss_pred ccCchhhhhhccHHHhhhhhhhhhhhhHHHHHHHHHhhhHHHHhCCCCC-----------------CCHHHHHhCcCccc
Confidence 49999999999998888754 444 289999999999874 3332 12578999999999
Q ss_pred HHHHHHH-HHhCCCCccccchHHHHHHHHhhccC--CChHHHHHHHHHHhc
Q 016856 324 FTRNNVL-VCIGFYHVIPTDSETIRHLKQVHARN--CTSKTVQMIAESIYG 371 (381)
Q Consensus 324 wTAd~VL-~~Lg~~dvfPvDt~v~Ril~rly~~~--~s~k~i~~~~~~~~g 371 (381)
+||++|| ++++++ +||+|+||+|++.|++... .+.+.++..+.+.+.
T Consensus 121 kTA~~il~~a~~~~-~~~VDtnv~RV~~Rlg~~~~~~~~~~~~~~l~~~~p 170 (214)
T d1orna_ 121 KTANVVVSVAFGVP-AIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIP 170 (214)
T ss_dssp HHHHHHHHHHHCCC-CCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSC
T ss_pred chHHHHHHHHhcCC-cccccchHHHHHHHHHHhhcccchhhhhhhhhhcCc
Confidence 9999996 899986 8999999999999997543 455677777766654
No 8
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.74 E-value=1.5e-17 Score=152.91 Aligned_cols=87 Identities=25% Similarity=0.476 Sum_probs=72.7
Q ss_pred CCCCHHHHhcCCHHHHHHhC-cCcH--HHHHHHHHHHHHHh---CCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChH
Q 016856 251 NFPSPRELANLDESFLAKRC-NLGY--RAGRILKLARGIVD---GQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPF 324 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~-g~Gy--RAkyI~~lA~~i~~---G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpw 324 (381)
.|||+++|+++++++|.+.+ +.|| |++.++..+..+.+ |.++ +.+++|++|||||+|
T Consensus 56 ~~~t~~~la~a~~~~l~~~i~~~G~~~ra~~l~~~~~~~~~~~~G~vp-----------------~~~~~Ll~LpGIG~k 118 (221)
T d1rrqa1 56 RFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVP-----------------DDPDEFSRLKGVGPY 118 (221)
T ss_dssp HSCSHHHHHHSCHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHHTTCCC-----------------CSHHHHHTSTTCCHH
T ss_pred hcchHHHHHhhcHHHHHhhhccchhhhhhHHHHHHHHHHhhhcCCCCc-----------------hHHHHHHHHHHhhhH
Confidence 38999999999999988854 5554 78888888888774 5443 235799999999999
Q ss_pred HHHHHH-HHhCCCCccccchHHHHHHHHhhcc
Q 016856 325 TRNNVL-VCIGFYHVIPTDSETIRHLKQVHAR 355 (381)
Q Consensus 325 TAd~VL-~~Lg~~dvfPvDt~v~Ril~rly~~ 355 (381)
||++|| +++|.+ +|++|+||+|++.|+++.
T Consensus 119 TA~~il~~a~~~p-~~~VDt~v~Rv~~Rl~~~ 149 (221)
T d1rrqa1 119 TVGAVLSLAYGVP-EPAVNGNVMRVLSRLFLV 149 (221)
T ss_dssp HHHHHHHHHTCCC-CCCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCc-ccccCccHHHHHHHhhcc
Confidence 999997 899986 689999999999999864
No 9
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.73 E-value=1.2e-17 Score=144.65 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=67.3
Q ss_pred CCCHHHHhcCCHHHHHHhC-cCc---HHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHH
Q 016856 252 FPSPRELANLDESFLAKRC-NLG---YRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRN 327 (381)
Q Consensus 252 FPTpe~La~~~~e~Lr~~~-g~G---yRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd 327 (381)
||||++|++++.++|.+.+ +.| .||++|+++|+.+.... .++|++|||||+|||+
T Consensus 49 ~pt~e~la~a~~~el~~~Ir~~G~~~~KAk~I~~~a~~~ip~~---------------------~~~l~~LpGVG~~tad 107 (144)
T d1ngna_ 49 YPSAEVARAADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKQ---------------------WRYPIELHGIGKYGND 107 (144)
T ss_dssp SCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHSC---------------------CSSGGGSTTCCHHHHH
T ss_pred CCchhhhhccCHHHHHHHHHhhhhHHHHHHHHHHHHhhHhhhh---------------------hhhHHhcCCccHHHHH
Confidence 8999999999999998765 344 38999999999886543 2478999999999999
Q ss_pred HHH-HHhCCCCcc-ccchHHHHHHHHhh
Q 016856 328 NVL-VCIGFYHVI-PTDSETIRHLKQVH 353 (381)
Q Consensus 328 ~VL-~~Lg~~dvf-PvDt~v~Ril~rly 353 (381)
+++ |+++..+.+ |+|.+++|.+.++.
T Consensus 108 ~~~if~~~~~~~v~~~D~~l~r~~~~~~ 135 (144)
T d1ngna_ 108 SYRIFCVNEWKQVHPEDHKLNKYHDWLW 135 (144)
T ss_dssp HHHHHTSSCGGGCCCCSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCChHHHHHHHHHH
Confidence 995 899986554 58999999887765
No 10
>d1mpga2 d.129.1.2 (A:1-99) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Probab=97.65 E-value=4e-05 Score=61.29 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=47.1
Q ss_pred CCccccceecCCCCCCCCCCCceeEEEEecCCCCCCcEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCccchHhHH
Q 016856 11 SRSLSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVR 90 (381)
Q Consensus 11 ~~~~~r~lrl~~~~~~~~~~~~~~~v~i~~~~~~~~~L~v~v~~~~~~~~~~~s~~~~~~i~~~v~r~l~Ld~d~~~~~~ 90 (381)
-++|.|+++++++ ...|+|+.+ ...+.|.+++..+. ..+...++++|+||||||.| +.++.
T Consensus 32 ~~~Y~Rt~~l~~~---------~G~~~v~~~-~~~~~l~v~l~~~~--------~~~l~~~v~rvRrlfDLdaD-p~~I~ 92 (99)
T d1mpga2 32 DSYYARSLAVGEY---------RGVVTAIPD-IARHTLHINLSAGL--------EPVAAECLAKMSRLFDLQCN-PQIVN 92 (99)
T ss_dssp SSCEEEEEEETTE---------EEEEEEEEE-TTTTEEEEEECGGG--------GGGHHHHHHHHHHHHTTTCC-HHHHH
T ss_pred CCceEEEEEeCCc---------cEEEEEEEc-CCCCEEEEEEeccc--------HHHHHHHHHHHHHHhcCCCC-HHHHH
Confidence 3789999999986 888888865 13456888887631 25788999999999999999 55444
No 11
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.49 E-value=7.7e-05 Score=61.47 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=51.1
Q ss_pred eEEEEecCCCCCCcEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCccchHhHHHHHHHhHHHHhhhccccccccCC
Q 016856 34 VDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDF 113 (381)
Q Consensus 34 ~~v~i~~~~~~~~~L~v~v~~~~~~~~~~~s~~~~~~i~~~v~r~l~Ld~d~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 113 (381)
.+|.|+|. ++.+.++++..... ......+.....+++||+||.|+...+..|.+.|+.++.... . ..
T Consensus 51 ~vv~L~Q~---~~~i~y~~~~~~~~----~~~~~~~~~~~~l~~Yf~LD~dl~~l~~~w~~~D~~~~~~~~----~--~~ 117 (124)
T d2noha2 51 QVWTLTQT---EEQLHCTVYRGDKS----QASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQ----K--FQ 117 (124)
T ss_dssp EEEEEEEC---SSEEEEEEEC---C----CCCCCCHHHHHHHHHHTTTTSCHHHHHHHHHHHCHHHHHHHH----H--CT
T ss_pred EEEEEEEc---CCcEEEEEeccccc----ccCCcchhHHHHHHHHHhCCCCHHHHHHHhhhcCHHHHHHHH----c--CC
Confidence 46678887 78899998874211 111122334556899999999999999999888887776542 1 14
Q ss_pred cccccCC
Q 016856 114 SGRVFRS 120 (381)
Q Consensus 114 ggRv~r~ 120 (381)
|+||+||
T Consensus 118 GiRILRQ 124 (124)
T d2noha2 118 GVRLLRQ 124 (124)
T ss_dssp TCCCCCC
T ss_pred ceEEeCC
Confidence 7899996
No 12
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=94.56 E-value=0.044 Score=41.29 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=17.9
Q ss_pred HHHHhcCCccChHHHHHHHH
Q 016856 312 AEQLSQINGFGPFTRNNVLV 331 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~ 331 (381)
.+.|.++||||+|||+-|+.
T Consensus 43 ~~~L~~vpGIG~KtA~rIi~ 62 (78)
T d1cuka2 43 VGALVKLPGIGKKTAERLIV 62 (78)
T ss_dssp HHHHHTSTTCCHHHHHHHHH
T ss_pred HHHhhcCCCCCHHHHHHHHH
Confidence 57899999999999999954
No 13
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=94.30 E-value=0.051 Score=40.48 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=18.7
Q ss_pred HHHHhcCCccChHHHHHHHHHh
Q 016856 312 AEQLSQINGFGPFTRNNVLVCI 333 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~L 333 (381)
.+.|.++||||+|||+-|..-|
T Consensus 44 ~~~L~~vpGIG~KtA~rIi~eL 65 (73)
T d1ixra1 44 ARLLTSASGVGRRLAERIALEL 65 (73)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHhhcCCCCCHHHHHHHHHHH
Confidence 4689999999999999996444
No 14
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}
Probab=93.71 E-value=0.051 Score=40.23 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=18.6
Q ss_pred HHHHhcCCccChHHHHHHHHHh
Q 016856 312 AEQLSQINGFGPFTRNNVLVCI 333 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~L 333 (381)
.+.|.++||||+|||+-|+.-|
T Consensus 43 ~~~L~~vpGIG~KtA~rIi~eL 64 (71)
T d1bvsa2 43 VASLTRVPGIGRRGAERIVLEL 64 (71)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHS
T ss_pred HHHhhcCCCCCHHHHHHHHHHH
Confidence 5689999999999999995443
No 15
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}
Probab=90.33 E-value=0.064 Score=39.69 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCccChHHHHHHHHHhC
Q 016856 308 YVKLAEQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 308 ~ee~~~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
..+..+.|++++||||++|=.+|-.+.
T Consensus 4 Er~~F~~Li~V~GIGpK~Al~iLs~~~ 30 (71)
T d1bvsa2 4 NRDLFLALLSVSGVGPRLAMATLAVHD 30 (71)
T ss_dssp HHHHHHHHHTSSSCCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCCcCHHHHHHHHHhCC
Confidence 356889999999999999999985444
No 16
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=89.85 E-value=0.073 Score=39.59 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=22.7
Q ss_pred cHHHHHHHHhcCCccChHHHHHHHHHhC
Q 016856 307 AYVKLAEQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 307 ~~ee~~~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
+..+..+.|+++.||||++|=.||-.+.
T Consensus 4 ~Er~lF~~Li~V~GIGpk~Al~iLs~~~ 31 (73)
T d1ixra1 4 ENLALFELLLSVSGVGPKVALALLSALP 31 (73)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCCcCHHHHHHHHHHcc
Confidence 3456789999999999999999884443
No 17
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=88.87 E-value=0.43 Score=34.84 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=37.9
Q ss_pred HHHhCcCcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH--HHhCC
Q 016856 266 LAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL--VCIGF 335 (381)
Q Consensus 266 Lr~~~g~GyRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL--~~Lg~ 335 (381)
+.+..|-.||++.-...+..|..=..++. + .++|..|||||+.+++.|- .--|.
T Consensus 15 ~~~~~gd~fr~~AY~~A~~~l~~l~~~i~------------~----~~~l~~lpGiG~~i~~kI~Eil~tG~ 70 (76)
T d2bcqa1 15 AYSVQGDKWRALGYAKAINALKSFHKPVT------------S----YQEACSIPGIGKRMAEKIIEILESGH 70 (76)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSCCSCCC------------C----HHHHHTSTTCCHHHHHHHHHHHHSSS
T ss_pred HHHHcCChHHHHHHHHHHHHHHhCCcccC------------C----HHHHhcCCCccHHHHHHHHHHHHhCc
Confidence 33445677899999999998876433321 2 2468899999999999994 34443
No 18
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=88.77 E-value=0.088 Score=39.56 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCccChHHHHHHHHHh
Q 016856 308 YVKLAEQLSQINGFGPFTRNNVLVCI 333 (381)
Q Consensus 308 ~ee~~~~Ll~L~GIGpwTAd~VL~~L 333 (381)
..+..+.|++++||||++|=.||-.+
T Consensus 4 Er~~F~~Li~V~GIGpK~Al~iLs~~ 29 (78)
T d1cuka2 4 ERTLFKELIKTNGVGPKLALAILSGM 29 (78)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHS
T ss_pred HHHHHHHHHccCCccHHHHHHHHHhC
Confidence 35688999999999999999998444
No 19
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=88.62 E-value=0.14 Score=37.04 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=19.0
Q ss_pred HHHHhcCCccChHHHHHHHHHhC
Q 016856 312 AEQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
.++|.+++|||+++|+.|.-.++
T Consensus 41 ~eeL~~i~GIG~~~A~~I~~~~~ 63 (68)
T d1x2ia1 41 VAELMKVEGIGEKIAKEIRRVIT 63 (68)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcCHHHHHHHHHHHh
Confidence 46899999999999999964443
No 20
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]}
Probab=88.42 E-value=0.14 Score=44.88 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=26.1
Q ss_pred cHHHHHHHHhcCCccChHHHHHHH-HHhCCCC
Q 016856 307 AYVKLAEQLSQINGFGPFTRNNVL-VCIGFYH 337 (381)
Q Consensus 307 ~~ee~~~~Ll~L~GIGpwTAd~VL-~~Lg~~d 337 (381)
+.+++.+.|.+|||||||+|.-+. +-+.+.+
T Consensus 6 ~i~~LI~~l~kLPGIG~KsA~Rla~~LL~~~~ 37 (199)
T d1vdda_ 6 SLVSLIRELSRLPGIGPKSAQRLAFHLFEQPR 37 (199)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHHHSSSCH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHcCCH
Confidence 568899999999999999999995 5666554
No 21
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=88.29 E-value=0.15 Score=35.58 Aligned_cols=22 Identities=9% Similarity=0.317 Sum_probs=18.8
Q ss_pred HHHHhcCCccChHHHHHHHHHh
Q 016856 312 AEQLSQINGFGPFTRNNVLVCI 333 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~L 333 (381)
.++|.+++|||+++|+-|...|
T Consensus 33 ~eeL~~v~GIg~~~A~~I~~~l 54 (56)
T d1kfta_ 33 VEEIAKVPGISQGLAEKIFWSL 54 (56)
T ss_dssp HHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHH
Confidence 4689999999999999996444
No 22
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=85.61 E-value=0.23 Score=35.09 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=19.5
Q ss_pred HHHhcCCccChHHHHHHHHHhCC
Q 016856 313 EQLSQINGFGPFTRNNVLVCIGF 335 (381)
Q Consensus 313 ~~Ll~L~GIGpwTAd~VL~~Lg~ 335 (381)
+.|.+|||||++++..++..++-
T Consensus 3 d~L~~iPGIg~~~~~~Ll~~f~S 25 (62)
T d2a1ja1 3 DFLLKMPGVNAKNCRSLMHHVKN 25 (62)
T ss_dssp HHHHTSTTCCHHHHHHHHHHCSS
T ss_pred hHHhcCCCCCHHHHHHHHHHhcc
Confidence 57999999999999999855554
No 23
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=81.14 E-value=0.98 Score=33.42 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH--HHhCC
Q 016856 272 LGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL--VCIGF 335 (381)
Q Consensus 272 ~GyRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL--~~Lg~ 335 (381)
-.||++.-...|..|..-..++. + .++|..+||||+.+|+.|- ..-|.
T Consensus 23 ~~fr~~AY~~Aa~~i~~l~~~i~------------~----~~~l~~i~GIGk~ia~kI~E~~~TG~ 72 (82)
T d2fmpa1 23 AIHKYNAYRKAASVIAKYPHKIK------------S----GAEAKKLPGVGTKIAEKIDEFLATGK 72 (82)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCC------------C----HHHHHTSTTCCHHHHHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHHhCCcccC------------C----HHHHhcCCCccHHHHHHHHHHHHhCC
Confidence 45899999999999886443321 2 3578999999999999993 34444
No 24
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=81.14 E-value=0.33 Score=33.67 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=18.8
Q ss_pred HHhcCCccChHHHHHHHHHhCC
Q 016856 314 QLSQINGFGPFTRNNVLVCIGF 335 (381)
Q Consensus 314 ~Ll~L~GIGpwTAd~VL~~Lg~ 335 (381)
.|.+||||||.+|..++..|+-
T Consensus 3 ~L~~I~gVG~~~a~~L~~~F~s 24 (56)
T d1kfta_ 3 SLETIEGVGPKRRQMLLKYMGG 24 (56)
T ss_dssp GGGGCTTCSSSHHHHHHHHHSC
T ss_pred CcccCCCccHHHHHHHHHHhCC
Confidence 4789999999999999866664
No 25
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=80.79 E-value=0.74 Score=32.94 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=18.4
Q ss_pred HHhcCCccChHHHHHHHHHhCCC
Q 016856 314 QLSQINGFGPFTRNNVLVCIGFY 336 (381)
Q Consensus 314 ~Ll~L~GIGpwTAd~VL~~Lg~~ 336 (381)
.|.+|||||+.+|.-++..++-.
T Consensus 14 ~L~~IpgIG~~~a~~L~~~F~s~ 36 (70)
T d2bgwa1 14 ILQSFPGIGRRTAERILERFGSL 36 (70)
T ss_dssp HHHTSTTCCHHHHHHHHHHHSSH
T ss_pred HHcCCCCcCHHHHHHHHHHhCCH
Confidence 35699999999999998656643
No 26
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=80.61 E-value=0.36 Score=32.66 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.2
Q ss_pred HHHhcCCccChHHHHHHHHHhCCCC
Q 016856 313 EQLSQINGFGPFTRNNVLVCIGFYH 337 (381)
Q Consensus 313 ~~Ll~L~GIGpwTAd~VL~~Lg~~d 337 (381)
.+|++-.|||+|||+-+|+++|.|+
T Consensus 2 aeltkkegvgrktaerllrafgnpe 26 (55)
T d2csba3 2 AELTKKEGVGRKTAERLLRAFGNPE 26 (55)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHSSHH
T ss_pred hhhhhhccccHhHHHHHHHHhCCHH
Confidence 4688889999999999999999874
No 27
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=80.08 E-value=0.48 Score=33.34 Aligned_cols=21 Identities=19% Similarity=0.453 Sum_probs=18.8
Q ss_pred HHHHHHhcCCccChHHHHHHH
Q 016856 310 KLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 310 e~~~~Ll~L~GIGpwTAd~VL 330 (381)
.+.+.|+.|.||||.+|.-..
T Consensus 4 ~~l~~l~~I~GvGp~~A~~l~ 24 (57)
T d2fmpa2 4 SSINFLTRVSGIGPSAARKFV 24 (57)
T ss_dssp HHHHHHTTSTTCCHHHHHHHH
T ss_pred hHHHHHhccccccHHHHHHHH
Confidence 467899999999999999885
No 28
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=79.94 E-value=1.1 Score=31.36 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=32.8
Q ss_pred CCCCHHHHhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHh
Q 016856 251 NFPSPRELANLDESFLAKRCNLGY-RAGRILKLARGIVD 288 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~ 288 (381)
-|-|.++|+.+++++|.+.-|+|- +|+.|.+.|+.+.+
T Consensus 19 G~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ar~~~d 57 (60)
T d2i1qa1 19 GYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCD 57 (60)
T ss_dssp TCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHcC
Confidence 489999999999999998668886 69999988887764
No 29
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=79.56 E-value=1.4 Score=33.56 Aligned_cols=49 Identities=4% Similarity=-0.055 Sum_probs=36.0
Q ss_pred HHHhCcCcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH
Q 016856 266 LAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 266 Lr~~~g~GyRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
+.+..|-.||+..-...|..|..-..++.. .++|..|||||+.+++-|-
T Consensus 31 ~~e~~g~~fr~~AY~rAa~~i~~l~~~i~~----------------~~~l~~i~GIGk~i~~kI~ 79 (95)
T d1jmsa1 31 NDELRENEGSCLAFMRASSVLKSLPFPITS----------------MKDTEGIPCLGDKVKSIIE 79 (95)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTCSSCCCS----------------GGGGTTCSSCCHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHhCCcccCC----------------HHHHHhccchhHHHHHHHH
Confidence 334457779999999999988864433221 1358899999999999994
No 30
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.56 E-value=1.7 Score=32.92 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=39.7
Q ss_pred HHhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH
Q 016856 257 ELANLDESFLAKRCNLGY-RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 257 ~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
.|-.++.++|...-|+|+ +|+.|...=.. .|.+. + .+.|..++|||+++.+-+.
T Consensus 26 ~iNtAs~~eL~~lpgig~~~A~~II~yR~~--~G~f~--------------s----ledL~~V~Gi~~k~~eki~ 80 (91)
T d2edua1 26 LLNEGSARDLRSLQRIGPKKAQLIVGWREL--HGPFS--------------Q----VEDLERVEGITGKQMESFL 80 (91)
T ss_dssp HHHHSCHHHHHHSTTCCHHHHHHHHHHHHH--HCCCS--------------S----GGGGGGSTTCCHHHHHHHH
T ss_pred ccccCCHHHHhhCCCCCHHHHHHHHHHHHH--cCCCC--------------C----HHHHhcCCCCCHHHHHHHH
Confidence 577889999998668998 47777654332 45542 1 3578999999999999885
No 31
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=79.46 E-value=0.49 Score=33.93 Aligned_cols=23 Identities=13% Similarity=0.302 Sum_probs=18.8
Q ss_pred HHHHhcCCccChHHHHHHHHHhC
Q 016856 312 AEQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
.++|.+++|||+.+|+.|.-.|.
T Consensus 44 ~eeL~~v~GIG~~~A~~I~~~~~ 66 (70)
T d2bgwa1 44 KAEISKVEGIGEKRAEEIKKILM 66 (70)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHh
Confidence 46899999999999999964443
No 32
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=78.44 E-value=0.54 Score=33.33 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.5
Q ss_pred HHHHHHhcCCccChHHHHHHH
Q 016856 310 KLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 310 e~~~~Ll~L~GIGpwTAd~VL 330 (381)
.+.+.|++|.||||.+|.-..
T Consensus 5 ~~l~~f~~I~GvGp~~A~~l~ 25 (60)
T d1jmsa3 5 KSFKLFTSVFGVGLKTAEKWF 25 (60)
T ss_dssp HHHHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHhccccccHHHHHHHH
Confidence 568899999999999998774
No 33
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=78.32 E-value=1.1 Score=31.32 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=32.5
Q ss_pred CCCCHHHHhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHh
Q 016856 251 NFPSPRELANLDESFLAKRCNLGY-RAGRILKLARGIVD 288 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~ 288 (381)
-|-|.++|+.+++++|.+.-|+|. +|+.|...|+.+.+
T Consensus 21 g~~sv~~l~~a~~~eL~~i~Gi~~~~A~~i~~~ar~~~~ 59 (61)
T d1pzna1 21 GYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAAN 59 (61)
T ss_dssp TCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHcc
Confidence 489999999999999998778886 69999888887653
No 34
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=77.67 E-value=0.59 Score=32.86 Aligned_cols=22 Identities=32% Similarity=0.247 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCccChHHHHHHH
Q 016856 309 VKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 309 ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
-.+.+.++.+.||||++|.-..
T Consensus 4 ~~~l~~ft~I~GvGp~~A~~l~ 25 (57)
T d2bcqa2 4 VPVLELFSNIWGAGTKTAQMWY 25 (57)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHH
T ss_pred hHHHHHHhccccccHHHHHHHH
Confidence 3578899999999999998764
No 35
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=77.65 E-value=0.76 Score=38.99 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=34.5
Q ss_pred HHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHHHHhCCCCccccchHHHHHHHHhh
Q 016856 283 ARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVH 353 (381)
Q Consensus 283 A~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL~~Lg~~dvfPvDt~v~Ril~rly 353 (381)
|+.+++.--+++.|.+. + .++|.+++|||+++|+.|.-.|.. ...+..+.++.
T Consensus 120 Ak~La~~f~sl~~l~~a-------s----~eeL~~I~GIG~~~A~si~~ff~~-------~~n~~~i~~L~ 172 (181)
T d1dgsa1 120 ARNLARRFGTMDRLLEA-------S----LEELIEVEEVGELTARAILETLKD-------PAFRDLVRRLK 172 (181)
T ss_dssp HHHHHHTTSBHHHHTTC-------C----HHHHHTSTTCCHHHHHHHHHHHHC-------HHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhh-------H----HHHHhhcCCcCHHHHHHHHHHHCC-------HHHHHHHHHHH
Confidence 44445544456666654 3 468999999999999999644432 34555555554
No 36
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.15 E-value=0.82 Score=33.44 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=19.7
Q ss_pred HHHHhcCCccChHHHHHHHHHhCCC
Q 016856 312 AEQLSQINGFGPFTRNNVLVCIGFY 336 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~Lg~~ 336 (381)
.++|.+++|||++.|..|...|+.+
T Consensus 50 ~eeL~~i~GiG~~~A~~i~~~f~~p 74 (78)
T d2a1jb1 50 REDLALCPGLGPQKARRLFDVLHEP 74 (78)
T ss_dssp HHHHHTSSSCCSHHHHHHHHHHHSC
T ss_pred HHHHHHhhhhhHHHHHHHHHHHcCc
Confidence 4579999999999999997555543
No 37
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=74.00 E-value=1.1 Score=33.82 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=37.1
Q ss_pred HhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH
Q 016856 258 LANLDESFLAKRCNLGY-RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 258 La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
|-.++.++|....|+|. +|+.|...=+ ..|.+. + +++|..++|||+++-+-+.
T Consensus 29 iN~As~~~L~~lpGig~~~A~~Iv~~R~--~~G~f~--------------s----~edL~~v~gi~~k~~e~i~ 82 (90)
T d3bzka1 29 VNTASAALLARISGLNSTLAQNIVAHRD--ANGAFR--------------T----RDELKKVSRLGEKTFEQAA 82 (90)
T ss_dssp TTTCCHHHHTTSTTCCHHHHHHHHHHHH--HHCSCS--------------S----SGGGGGSTTCCHHHHHHHH
T ss_pred hhhCCHHHHhHCCCCCHHHHHHHHHHHH--HcCCCC--------------C----HHHHhhCCCCCHHHHHHhc
Confidence 34556788888678987 5877766333 246542 1 4688999999999987663
No 38
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=72.72 E-value=1.4 Score=31.27 Aligned_cols=26 Identities=8% Similarity=0.008 Sum_probs=20.5
Q ss_pred HHHHhcCCccChHHHHHHHHHhCCCC
Q 016856 312 AEQLSQINGFGPFTRNNVLVCIGFYH 337 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL~~Lg~~d 337 (381)
+..|..|||||+.+|..++..++..+
T Consensus 9 ~~~L~~I~gIG~~~a~~L~~~f~s~~ 34 (68)
T d1x2ia1 9 RLIVEGLPHVSATLARRLLKHFGSVE 34 (68)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHCSHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHcCCHH
Confidence 44577999999999999986676543
No 39
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.55 E-value=1.7 Score=31.58 Aligned_cols=29 Identities=14% Similarity=0.237 Sum_probs=23.5
Q ss_pred cHHHHHHHHhcCCccChHHHHHHHHHhCC
Q 016856 307 AYVKLAEQLSQINGFGPFTRNNVLVCIGF 335 (381)
Q Consensus 307 ~~ee~~~~Ll~L~GIGpwTAd~VL~~Lg~ 335 (381)
..+.+...|..|+|||+.+|..++..++-
T Consensus 13 ~~~~~~~~L~~I~gIg~~~a~~L~~~F~s 41 (78)
T d2a1jb1 13 FVSRVTECLTTVKSVNKTDSQTLLTTFGS 41 (78)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHSS
T ss_pred cHHHHHHHhcCCCCcCHHHHHHHHHHhCC
Confidence 44667888999999999999999755654
No 40
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=68.93 E-value=1.4 Score=30.66 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=27.8
Q ss_pred HHHHHh-CCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHHH
Q 016856 283 ARGIVD-GQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLV 331 (381)
Q Consensus 283 A~~i~~-G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL~ 331 (381)
|+.+.+ |--+++.|... + .++|.+++|||.++|+-|+.
T Consensus 14 a~~L~~~g~~sv~~l~~a-------~----~~eL~~i~Gi~~~~A~~i~~ 52 (61)
T d1pzna1 14 AEKLREAGYDTLEAIAVA-------S----PIELKEVAGISEGTALKIIQ 52 (61)
T ss_dssp HHHHHTTTCCSHHHHHTC-------C----HHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHhC-------C----HHHHHHCCCCCHHHHHHHHH
Confidence 445554 54567777765 4 35788999999999999964
No 41
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]}
Probab=65.40 E-value=1.7 Score=30.75 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=17.3
Q ss_pred HHHHhcCCccChHHHHHHH
Q 016856 312 AEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL 330 (381)
.++|.++||||+++|..|+
T Consensus 16 ~~eL~~lpgig~~~A~~Iv 34 (65)
T d2duya1 16 LEELMALPGIGPVLARRIV 34 (65)
T ss_dssp HHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHH
Confidence 4689999999999999996
No 42
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=62.97 E-value=4.1 Score=28.10 Aligned_cols=32 Identities=16% Similarity=0.387 Sum_probs=24.9
Q ss_pred CCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHHH
Q 016856 289 GQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLV 331 (381)
Q Consensus 289 G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL~ 331 (381)
|--+++.+... + .++|.+++|||+++|+-|..
T Consensus 19 G~~tv~~l~~a-------~----~eeL~~i~Gi~~~~A~~i~~ 50 (60)
T d2i1qa1 19 GYIDFMKIATA-------T----VGELTDIEGISEKAAAKMIM 50 (60)
T ss_dssp TCCSHHHHHTC-------C----HHHHHTSTTCCHHHHHHHHH
T ss_pred cCCCHHHHHhC-------C----HHHHHHCCCCCHHHHHHHHH
Confidence 56667777765 4 35799999999999998853
No 43
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=62.81 E-value=3.4 Score=29.12 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=33.2
Q ss_pred CCCCHHHHhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHh
Q 016856 251 NFPSPRELANLDESFLAKRCNLGY-RAGRILKLARGIVD 288 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~ 288 (381)
-|-|.++|+.++.++|.+.-|++. +|+-|+..|+.+..
T Consensus 23 G~~Tve~ia~~t~~~L~~i~Gi~e~~a~KIi~~A~k~~~ 61 (64)
T d1szpa1 23 GLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVP 61 (64)
T ss_dssp SCCSHHHHHHSCSHHHHTSTTCCHHHHHHHHHHHHHHSC
T ss_pred CCCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHcC
Confidence 488999999999999999779886 79999999988754
No 44
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=59.27 E-value=1.4 Score=33.93 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=17.1
Q ss_pred hcCCccChHHHHHHHHHhCCCCcc
Q 016856 316 SQINGFGPFTRNNVLVCIGFYHVI 339 (381)
Q Consensus 316 l~L~GIGpwTAd~VL~~Lg~~dvf 339 (381)
-.+|||||+||--++--+|-.+.+
T Consensus 20 pGV~GIGpktA~klIk~~g~ie~l 43 (108)
T d1a77a1 20 GGVKGIGFKRAYELVRSGVAKDVL 43 (108)
T ss_dssp TCSTTCCHHHHHHHHHTTCHHHHH
T ss_pred CCCCCcCHHHHHHHHHHcCCHHHH
Confidence 479999999998876444443433
No 45
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=58.42 E-value=1.7 Score=33.63 Aligned_cols=19 Identities=16% Similarity=0.217 Sum_probs=17.4
Q ss_pred HHHHhcCCccChHHHHHHH
Q 016856 312 AEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL 330 (381)
.++|.+||||||..|.-|.
T Consensus 26 ~~eL~~lpGIg~~~A~~Iv 44 (98)
T d2axtu1 26 IAAFIQYRGLYPTLAKLIV 44 (98)
T ss_dssp GGGGTTSTTCTHHHHHHHH
T ss_pred HHHHHHhhhhcHHHHHHHH
Confidence 4689999999999999996
No 46
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.24 E-value=2.5 Score=31.87 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=17.4
Q ss_pred HHHHhcCCccChHHHHHHH
Q 016856 312 AEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL 330 (381)
.++|.++||||+++|..|+
T Consensus 32 ~~eL~~lpgig~~~A~~II 50 (91)
T d2edua1 32 ARDLRSLQRIGPKKAQLIV 50 (91)
T ss_dssp HHHHHHSTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHH
Confidence 5689999999999999995
No 47
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=57.61 E-value=1.1 Score=34.76 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=35.1
Q ss_pred HHhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH
Q 016856 257 ELANLDESFLAKRCNLGY-RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 257 ~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
+|-.++.++|..+-|.|. +|+.|. ..|... + .+.|++++|||+++.+.+-
T Consensus 20 dlN~As~~eL~~lpGIg~~~A~~Iv------~~gpf~--------------s----~edL~~V~GIg~~~~e~lk 70 (98)
T d2axtu1 20 DLNNTNIAAFIQYRGLYPTLAKLIV------KNAPYE--------------S----VEDVLNIPGLTERQKQILR 70 (98)
T ss_dssp ESSSSCGGGGTTSTTCTHHHHHHHH------HSCCCS--------------S----GGGGGGCTTCCTTHHHHHH
T ss_pred ecccccHHHHHHhhhhcHHHHHHHH------HcCCcC--------------C----HHHHhhCCCCCHHHHHHHH
Confidence 445667778876557886 566665 245431 1 4689999999999999883
No 48
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=57.06 E-value=2.6 Score=32.23 Aligned_cols=24 Identities=17% Similarity=0.099 Sum_probs=18.0
Q ss_pred HHhcCCccChHHHHHHHHHhCCCC
Q 016856 314 QLSQINGFGPFTRNNVLVCIGFYH 337 (381)
Q Consensus 314 ~Ll~L~GIGpwTAd~VL~~Lg~~d 337 (381)
....+||||||||--++.-+|..+
T Consensus 17 n~pGV~GIG~ktA~kli~~~gsle 40 (105)
T d1rxwa1 17 YNEGVKGVGVKKALNYIKTYGDIF 40 (105)
T ss_dssp TBCCCTTCCHHHHHHHHHHHSSHH
T ss_pred CCCCCCCcCHHHHHHHHHHhCCHH
Confidence 456899999999988875555433
No 49
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=56.27 E-value=2.9 Score=31.35 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=17.4
Q ss_pred HHHHhcCCccChHHHHHHH
Q 016856 312 AEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~VL 330 (381)
.++|..+|||||..|..|+
T Consensus 34 ~~~L~~lpGig~~~A~~Iv 52 (90)
T d3bzka1 34 AALLARISGLNSTLAQNIV 52 (90)
T ss_dssp HHHHTTSTTCCHHHHHHHH
T ss_pred HHHHhHCCCCCHHHHHHHH
Confidence 4689999999999999995
No 50
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.84 E-value=5.8 Score=27.29 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=27.8
Q ss_pred ccCCCCHHHHhcCCHHHHHHhCcCcHH-HHHHHHHH
Q 016856 249 IGNFPSPRELANLDESFLAKRCNLGYR-AGRILKLA 283 (381)
Q Consensus 249 ~~~FPTpe~La~~~~e~Lr~~~g~GyR-AkyI~~lA 283 (381)
...|.|.++|.+++.++|.+..| |.+ |+.|.+.-
T Consensus 20 l~~f~Si~~l~~As~~eL~~v~G-~~~~A~~i~~f~ 54 (62)
T d2a1ja1 20 MHHVKNIAELAALSQDELTSILG-NAANAKQLYDFI 54 (62)
T ss_dssp HHHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHhccHHHHHhCCHHHHHHCcC-cHHHHHHHHHHH
Confidence 45699999999999999999778 764 77776543
No 51
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.05 E-value=3.9 Score=29.37 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=33.0
Q ss_pred CCCCHHHHhcCCHHHHHHhCcCcH-HHHHHHHHHHHHHh
Q 016856 251 NFPSPRELANLDESFLAKRCNLGY-RAGRILKLARGIVD 288 (381)
Q Consensus 251 ~FPTpe~La~~~~e~Lr~~~g~Gy-RAkyI~~lA~~i~~ 288 (381)
-|-|.+.|+.++.++|.+.-|++- +|+-|++.|+.+++
T Consensus 30 G~~Tv~~i~~at~~~L~~i~G~~e~~A~KIi~~a~k~~~ 68 (70)
T d1b22a_ 30 GFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVP 68 (70)
T ss_dssp CCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHSC
T ss_pred CcchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHcC
Confidence 488999999999999999778885 79999999987753
No 52
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=52.75 E-value=2.8 Score=32.20 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=17.8
Q ss_pred HHHhcCCccChHHHHHHHHHhC
Q 016856 313 EQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 313 ~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
+-+..+||||+|||.-++.-+|
T Consensus 19 DnipGV~GiG~KtA~kli~~~g 40 (105)
T d1xo1a1 19 DNIRGVEGIGAKRGYNIIREFG 40 (105)
T ss_dssp GTBCCCTTCCHHHHHHHHHHHC
T ss_pred cCCcCcCCcCHHHHHHHHHHcc
Confidence 4678899999999998875444
No 53
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=49.90 E-value=8.2 Score=32.18 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=40.3
Q ss_pred CCHHHHhcCCHHHHHHhCcCcHH-HHHHHHHHHHHH-hCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH
Q 016856 253 PSPRELANLDESFLAKRCNLGYR-AGRILKLARGIV-DGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 253 PTpe~La~~~~e~Lr~~~g~GyR-AkyI~~lA~~i~-~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
-++.+|..++.++|..+-|+|.| |..|.. .|. ....+++ ... .-+.|||||+.+|..++
T Consensus 64 ~~~~Dly~L~~~~l~~l~~~g~ksa~nl~~---~Ie~sk~~~l~---------------r~l-~aLGI~~vG~~~Ak~La 124 (181)
T d1dgsa1 64 RDVADLYHLRKEDLLGLERMGEKSAQNLLR---QIEESKHRGLE---------------RLL-YALGLPGVGEVLARNLA 124 (181)
T ss_dssp SSGGGGGGGCCHHHHTTSSCCSTTHHHHHH---HHHHGGGCCHH---------------HHH-HHTTCSSCCHHHHHHHH
T ss_pred chhhhhhhhhhHHHhcccccchHHHHHHHH---HHHhhcchhHH---------------HHH-HHHHhhhhhHHHHHHHH
Confidence 46788888888999885578865 444333 332 2233322 222 44679999999998886
Q ss_pred HHhC
Q 016856 331 VCIG 334 (381)
Q Consensus 331 ~~Lg 334 (381)
..++
T Consensus 125 ~~f~ 128 (181)
T d1dgsa1 125 RRFG 128 (181)
T ss_dssp HTTS
T ss_pred HHhh
Confidence 4444
No 54
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]}
Probab=47.49 E-value=5.9 Score=30.78 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=20.8
Q ss_pred HHHHHHhcCCccChHHHHHHHHHhC
Q 016856 310 KLAEQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 310 e~~~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
.+.-.|..|.|||+.+|..|+.-+|
T Consensus 13 ~v~~ALt~I~GIG~~~A~~Ic~~lg 37 (114)
T d2gy9m1 13 HAVIALTSIYGVGKTRSKAILAAAG 37 (114)
T ss_dssp BHHHHHTTSSSCCHHHHHHHHHHHT
T ss_pred EEEEEeeeeeCcCHHHHHHHHHHcC
Confidence 4677999999999999999974444
No 55
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}
Probab=46.95 E-value=75 Score=26.35 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=30.5
Q ss_pred CcccccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 016856 113 FSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCEL 151 (381)
Q Consensus 113 ~ggRv~r~p~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~ 151 (381)
+|.-+-....+||.|+-.+..+-.+|.-+++--+.+.+.
T Consensus 21 WG~p~~dD~~LFE~L~Le~fQaGLsW~~IL~Kr~~fr~a 59 (187)
T d1nkua_ 21 WGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59 (187)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 555555555799999999999999999998766666554
No 56
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.20 E-value=4.7 Score=31.85 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=16.3
Q ss_pred HHhcCCccChHHHHHHHHHhC
Q 016856 314 QLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 314 ~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
.+..+||||++||--++.-+|
T Consensus 17 ~~pgv~gIG~ktA~kli~~~~ 37 (140)
T d1ul1x1 17 YCESIRGIGPKRAVDLIQKHK 37 (140)
T ss_dssp SSCCCTTCCHHHHHHHHHHSS
T ss_pred CCCCCCCccHHHHHHHHHHhC
Confidence 466899999999988864333
No 57
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=45.06 E-value=3.2 Score=32.59 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=13.3
Q ss_pred hcCCccChHHHHHHHH
Q 016856 316 SQINGFGPFTRNNVLV 331 (381)
Q Consensus 316 l~L~GIGpwTAd~VL~ 331 (381)
..+|||||+||=-++-
T Consensus 20 ~gI~GIGpktAlklik 35 (120)
T d1b43a1 20 GGIKGIGLKKALEIVR 35 (120)
T ss_dssp TCSTTCCHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHH
Confidence 4799999999977763
No 58
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=44.36 E-value=1.4 Score=33.98 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=19.7
Q ss_pred HHhcCCccChHHHHHHHHHhCCCCccc
Q 016856 314 QLSQINGFGPFTRNNVLVCIGFYHVIP 340 (381)
Q Consensus 314 ~Ll~L~GIGpwTAd~VL~~Lg~~dvfP 340 (381)
-+-.+||||+|||.-++--+|..+.+.
T Consensus 19 nipGv~GiG~KtA~kll~~~gsle~i~ 45 (116)
T d1cmwa1 19 NLPGVKGIGEKTARKLLEEWGSLEALL 45 (116)
T ss_dssp CCCCCCCSTTCTTTTTGGGGGTTCSSS
T ss_pred CcccccccCchhHHHHHHhcchHHHHH
Confidence 577899999999988775555545433
No 59
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}
Probab=41.74 E-value=7.1 Score=30.85 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=21.2
Q ss_pred HHHHHHHhcCCccChHHHHHHHHHhC
Q 016856 309 VKLAEQLSQINGFGPFTRNNVLVCIG 334 (381)
Q Consensus 309 ee~~~~Ll~L~GIGpwTAd~VL~~Lg 334 (381)
..+.-.|..|.|||+.+|..|+.-+|
T Consensus 12 K~v~~ALt~I~GIG~~~A~~Ic~~lg 37 (125)
T d2uubm1 12 KRVDVALTYIYGIGKARAKEALEKTG 37 (125)
T ss_dssp SBHHHHHTTSTTCCHHHHHHHHHTTT
T ss_pred CEEEEeeeeeeCcCHHHHHHHHHHcC
Confidence 34677999999999999999974444
No 60
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=37.02 E-value=8.6 Score=27.35 Aligned_cols=44 Identities=25% Similarity=0.332 Sum_probs=30.1
Q ss_pred cCcHHHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH
Q 016856 271 NLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 271 g~GyRAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL 330 (381)
+++.|+..... ..|-..+..|.++ + .+.|+++||+|+++.+-|-
T Consensus 14 ~LS~R~~N~L~-----~~gI~tv~dL~~~-------s----~~dLl~i~n~G~ksl~EI~ 57 (69)
T d1doqa_ 14 GLSTRVLHSLK-----EEGIESVRALLAL-------N----LKDLKNIPGIGERSLEEIK 57 (69)
T ss_dssp TCCHHHHHHHH-----HTTCCSHHHHHHS-------C----HHHHTTSTTCCHHHHHHHH
T ss_pred CCCHHHHHHHH-----HcCCccHHHHHHC-------C----HHHHHhCCCCCHHHHHHHH
Confidence 46666643221 2355566777766 3 4689999999999999883
No 61
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.00 E-value=16 Score=25.40 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=25.1
Q ss_pred hCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHHH
Q 016856 288 DGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLV 331 (381)
Q Consensus 288 ~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL~ 331 (381)
.|--+.+.+... + .++|.+++|||..+|+=|..
T Consensus 22 aG~~Tve~ia~~-------t----~~~L~~i~Gi~e~~a~KIi~ 54 (64)
T d1szpa1 22 SGLHTAEAVAYA-------P----RKDLLEIKGISEAKADKLLN 54 (64)
T ss_dssp TSCCSHHHHHHS-------C----SHHHHTSTTCCHHHHHHHHH
T ss_pred cCCCcHHHHHhC-------C----HHHHHHcCCCCHHHHHHHHH
Confidence 355556777655 2 46899999999999999864
No 62
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=34.24 E-value=6.2 Score=32.17 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=15.4
Q ss_pred HHHhcCCccChHHHHHHH
Q 016856 313 EQLSQINGFGPFTRNNVL 330 (381)
Q Consensus 313 ~~Ll~L~GIGpwTAd~VL 330 (381)
..|..|+||||++|+.+-
T Consensus 10 ~~i~~lkGvGpk~~~~L~ 27 (180)
T d1gm5a2 10 TDIQYAKGVGPNRKKKLK 27 (180)
T ss_dssp CCSSSSSSCCHHHHHHHH
T ss_pred CChhhcCCcCHHHHHHHH
Confidence 367889999999999883
No 63
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}
Probab=28.18 E-value=15 Score=26.04 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.8
Q ss_pred HHHHhcCCccChHHHHHH
Q 016856 312 AEQLSQINGFGPFTRNNV 329 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~V 329 (381)
.++|.+|+|||++.++..
T Consensus 45 ~~~L~~I~G~g~~k~~~y 62 (77)
T d1wuda1 45 ASEMLSVNGVGMRKLERF 62 (77)
T ss_dssp HHHHHTSTTCCHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHH
Confidence 679999999999998765
No 64
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=27.35 E-value=44 Score=27.92 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=35.3
Q ss_pred cCCHHHHHHhCcCcH--------HHHHHHHHHHHHHh--CCCChhHHHh-hhhhcccCcHHHHHHHHhcCCccChHHHHH
Q 016856 260 NLDESFLAKRCNLGY--------RAGRILKLARGIVD--GQIQLRELED-MCNEASLTAYVKLAEQLSQINGFGPFTRNN 328 (381)
Q Consensus 260 ~~~~e~Lr~~~g~Gy--------RAkyI~~lA~~i~~--G~l~Le~L~~-l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~ 328 (381)
+.+++++.+..+++. -|..+...+..+.+ |...++.|.. +..+ -.++ .-.|++|||||++.|.-
T Consensus 85 E~~~~~I~~~y~v~~Gdl~~~~~~a~wl~~~~~~~~~~~~~~~l~~L~~Rl~~G----v~~e-ll~L~~i~gvgr~rAr~ 159 (198)
T d2p6ra2 85 EKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTSVSGLTERIKHG----VKEE-LLELVRIRHIGRVRARK 159 (198)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSTTHHHHHHHT----CCGG-GHHHHTSTTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHcc----CCHH-HHhHhcCCCCCHHHHHH
Confidence 456677766555542 24444444444442 3334555543 1110 0111 34689999999999877
Q ss_pred HH
Q 016856 329 VL 330 (381)
Q Consensus 329 VL 330 (381)
+.
T Consensus 160 L~ 161 (198)
T d2p6ra2 160 LY 161 (198)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 65
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.20 E-value=37 Score=23.78 Aligned_cols=51 Identities=16% Similarity=0.294 Sum_probs=33.6
Q ss_pred HHHHHHhCcCcHHHHHHHHHHHHHH-hCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHHH
Q 016856 263 ESFLAKRCNLGYRAGRILKLARGIV-DGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLV 331 (381)
Q Consensus 263 ~e~Lr~~~g~GyRAkyI~~lA~~i~-~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL~ 331 (381)
.+.|.. -|+|.+. ++.+. .|--+.+.+..+ + .+.|+.++|||.++|+-|+.
T Consensus 10 i~~L~~-~Gig~~~------i~kL~~aG~~Tv~~i~~a-------t----~~~L~~i~G~~e~~A~KIi~ 61 (70)
T d1b22a_ 10 ISRLEQ-CGINAND------VKKLEEAGFHTVEAVAYA-------P----KKELINIKGISEAKADKILA 61 (70)
T ss_dssp HHHHHH-TTCSHHH------HHHHHTTCCSSGGGBTSS-------B----HHHHHTTTTCSTTHHHHHHH
T ss_pred HHHHhh-CCCCHHH------HHHHHHcCcchHHHHHhC-------C----HHHHHHcCCCCHHHHHHHHH
Confidence 455543 4666542 23333 465566676655 3 57899999999999999964
No 66
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.62 E-value=20 Score=26.58 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=15.1
Q ss_pred HHHHhcCCccChHHHHHH
Q 016856 312 AEQLSQINGFGPFTRNNV 329 (381)
Q Consensus 312 ~~~Ll~L~GIGpwTAd~V 329 (381)
.++|.+|+|||++.++-+
T Consensus 54 ~~eL~~I~G~g~~k~~ky 71 (94)
T d2e1fa1 54 VENVKRIDGVSEGKAAML 71 (94)
T ss_dssp HHHHTTSTTCCHHHHHHT
T ss_pred HHHHcCCCCCCHHHHHHH
Confidence 679999999999987644
Done!