Your job contains 1 sequence.
>016857
MLGGLYGDLPPPSDEDKPTNTTTTVWSSSAKMAPPTLRKPSSIFAPPQTILKPQSKPKTT
QNSLPTRPHSSPAIAPSPDDAAALPQPALVGVTSTVIEEYDPARPNDYEDYRREKKKKAV
DAEIRRELERRRQEGEERERREREERENASASRLNMSGEEAWKRRAAMSSGGVPPRSPSP
PPVNVESGGGGGGFTIGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLGRQEQGITTP
LMARKTDRRAGVIVNASENKSEKKVKSVNFNGPPTRVLLLRNMVGPGEVDDELEDEVGSE
CAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFY
DEERFSKNELAPLPGEIPGFT
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016857
(381 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2028130 - symbol:DRT111 "DNA-DAMAGE-REPAIR/TOL... 1072 1.9e-108 1
MGI|MGI:1924188 - symbol:Rbm17 "RNA binding motif protein... 316 4.9e-33 2
RGD|1311208 - symbol:Rbm17 "RNA binding motif protein 17"... 316 4.9e-33 2
UNIPROTKB|E2RMQ0 - symbol:RBM17 "Uncharacterized protein"... 314 7.9e-33 2
UNIPROTKB|F1RUL1 - symbol:RBM17 "Uncharacterized protein"... 314 7.9e-33 2
UNIPROTKB|A7MB77 - symbol:RBM17 "RBM17 protein" species:9... 313 1.0e-32 2
UNIPROTKB|Q96I25 - symbol:RBM17 "Splicing factor 45" spec... 313 1.0e-32 2
ZFIN|ZDB-GENE-040426-817 - symbol:rbm17 "RNA binding moti... 219 1.5e-32 3
UNIPROTKB|E1BUJ1 - symbol:RBM17 "Uncharacterized protein"... 306 5.5e-32 2
GENEDB_PFALCIPARUM|PF14_0513 - symbol:PF14_0513 "RNA bind... 215 1.2e-24 3
UNIPROTKB|Q8IKT8 - symbol:PF14_0513 "RNA binding protein,... 215 1.2e-24 3
FB|FBgn0086683 - symbol:Spf45 "Spf45" species:7227 "Droso... 176 2.6e-22 3
WB|WBGene00010233 - symbol:F58B3.7 species:6239 "Caenorha... 179 1.4e-12 2
DICTYBASE|DDB_G0270450 - symbol:DDB_G0270450 "RNA-binding... 142 5.7e-11 3
ASPGD|ASPL0000077903 - symbol:AN4398 species:162425 "Emer... 91 5.2e-09 4
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 160 6.7e-09 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 158 8.4e-09 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 158 9.4e-09 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 158 9.4e-09 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 152 4.1e-08 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 150 7.2e-08 1
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 150 7.4e-08 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 150 7.8e-08 1
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 150 7.8e-08 1
UNIPROTKB|H0Y6J6 - symbol:RBM17 "Splicing factor 45" spec... 118 9.5e-08 2
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 149 9.7e-08 1
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 143 4.4e-07 1
UNIPROTKB|Q5W012 - symbol:RBM17 "Splicing factor 45" spec... 113 6.3e-07 2
UNIPROTKB|J9NSX2 - symbol:RBM17 "Uncharacterized protein"... 118 7.1e-07 2
WB|WBGene00004389 - symbol:rnp-6 species:6239 "Caenorhabd... 133 1.0e-05 1
FB|FBgn0034834 - symbol:LS2 "Large Subunit 2" species:722... 128 1.8e-05 1
TAIR|locus:505006587 - symbol:AT5G08535 species:3702 "Ara... 104 3.0e-05 1
UNIPROTKB|I3LVL9 - symbol:PUF60 "Uncharacterized protein"... 117 0.00027 1
UNIPROTKB|F1NFM6 - symbol:PINX1 "Uncharacterized protein"... 91 0.00079 1
TAIR|locus:2146839 - symbol:AT5G26610 species:3702 "Arabi... 110 0.00097 1
>TAIR|locus:2028130 [details] [associations]
symbol:DRT111 "DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA] [GO:0006312 "mitotic
recombination" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0010212 "response to
ionizing radiation" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006281 "DNA repair" evidence=IGI] [GO:0009507 "chloroplast"
evidence=ISS] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174
SMART:SM00360 SMART:SM00443 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0009507 GO:GO:0000166 GO:GO:0006281
Gene3D:3.30.70.330 EMBL:AC009917 GO:GO:0003723 EMBL:M98455
EMBL:AY045859 EMBL:AY091399 IPI:IPI00533002 PIR:G86429 PIR:S33706
RefSeq:NP_174336.1 UniGene:At.20697 UniGene:At.75631
ProteinModelPortal:P42698 SMR:P42698 IntAct:P42698 PaxDb:P42698
PRIDE:P42698 EnsemblPlants:AT1G30480.1 GeneID:839927
KEGG:ath:AT1G30480 GeneFarm:2948 TAIR:At1g30480 eggNOG:NOG317167
HOGENOM:HOG000231726 InParanoid:P42698 KO:K12840 OMA:EEMEKCG
PhylomeDB:P42698 ProtClustDB:CLSN2714275 Genevestigator:P42698
GermOnline:AT1G30480 InterPro:IPR016967 PIRSF:PIRSF031066
Uniprot:P42698
Length = 387
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 227/393 (57%), Positives = 258/393 (65%)
Query: 1 MLGGLYGDLPPPSDEDKPTNTTTTVWSSSAKMAPPTLRKPSSIFAPPQTILKPQSKPKTT 60
MLGGLYGDLPPP+D++KP+ +++VWSSS KMAPPTLRKP + FAPPQTIL+P +KPK
Sbjct: 1 MLGGLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPA-FAPPQTILRPLNKPKPI 59
Query: 61 QNSL---PTRXXXXXXXXXXXXXXXXXXXXXLVGVTSTVIEEYDPARPNDYEDYRREKKK 117
++ P LVGVTS+VIEEYDPARPNDYE+Y+REKK+
Sbjct: 60 VSAPYKPPPPSNSSQSVLIPANESAPSHQPALVGVTSSVIEEYDPARPNDYEEYKREKKR 119
Query: 118 KAVDAEIXXXXXXXXXXXXXXXXXXXXXXX------NASASRLNMSGEEAWKRRAAMXXX 171
KA +AE+ N+ SRLN+SGEEAWKRRAAM
Sbjct: 120 KATEAEMKREMDKRRQEDEERDKREREEREKERERDNSDPSRLNISGEEAWKRRAAMSGG 179
Query: 172 XXXXXXXXXXXXXXXXXXXXXXFTIGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLG 231
F+IGKSETSGLG+GAGGQMTAAQRMMAKMGWK+GQGLG
Sbjct: 180 GSGGKGRSSSPPGNVDG-----FSIGKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQGLG 234
Query: 232 RQEQGITTPLMARKTDRRAGVIVNAXXXXXXXXXX----XXXFNGPPTRVLLLRNMXXXX 287
+ EQGITTPLMA+KTDRRAGVIVNA NG PTRVLLLRNM
Sbjct: 235 KSEQGITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMVGPG 294
Query: 288 XXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDG 347
C KYGTVTRVLIFEITEPNFPV EAVRIFVQF R E+TTKAL+DLDG
Sbjct: 295 QVDDELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDG 354
Query: 348 RFFGGRVVRATFYDEERFSKNELAPLPGEIPGF 380
R+FGGR VRATFYDEE+FSKNELAP+PGEIPG+
Sbjct: 355 RYFGGRTVRATFYDEEKFSKNELAPVPGEIPGY 387
>MGI|MGI:1924188 [details] [associations]
symbol:Rbm17 "RNA binding motif protein 17" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=TAS] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174
SMART:SM00361 SMART:SM00443 MGI:MGI:1924188 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0000375 eggNOG:NOG317167 HOGENOM:HOG000231726 KO:K12840
InterPro:IPR016967 PIRSF:PIRSF031066 EMBL:AL831794 CTD:84991
HOVERGEN:HBG059363 OMA:IPPPVYD OrthoDB:EOG48SGTF EMBL:AF083384
EMBL:BC034896 IPI:IPI00170394 RefSeq:NP_690037.1 UniGene:Mm.182769
ProteinModelPortal:Q8JZX4 SMR:Q8JZX4 STRING:Q8JZX4
PhosphoSite:Q8JZX4 PaxDb:Q8JZX4 PRIDE:Q8JZX4
Ensembl:ENSMUST00000040314 GeneID:76938 KEGG:mmu:76938
UCSC:uc008iio.1 GeneTree:ENSGT00390000008837 InParanoid:A2AP41
NextBio:346129 Bgee:Q8JZX4 CleanEx:MM_RBM17 Genevestigator:Q8JZX4
GermOnline:ENSMUSG00000037197 Uniprot:Q8JZX4
Length = 405
Score = 316 (116.3 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 73/172 (42%), Positives = 99/172 (57%)
Query: 209 GGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIV--NAXXXXXXXXXX 266
GG T A ++M K G++EGQGLG+ EQG++T L KT +R G I+ +A
Sbjct: 235 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKGEAQDAS 292
Query: 267 XXXFNGP-------PTRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPN 319
+ P PT+V+LLRNM C KYG V + +IFEI P
Sbjct: 293 KKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PG 350
Query: 320 FPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
P DEAVRIF++FER E KA++DL+GR+FGGRVV+A FY+ ++F +LA
Sbjct: 351 APDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 402
Score = 60 (26.2 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 98 EEYDPARPNDYEDY-RREKKKKAVDAEI 124
+EYDP PNDYE +R+++++ E+
Sbjct: 98 DEYDPMFPNDYEKVVKRQREERQRQREL 125
Score = 47 (21.6 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 101 DPARPNDYEDYRREKKKKAV 120
DP D EDY RE++K+++
Sbjct: 152 DPDSDED-EDYERERRKRSM 170
>RGD|1311208 [details] [associations]
symbol:Rbm17 "RNA binding motif protein 17" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000467 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF01585 PROSITE:PS50174 SMART:SM00361 SMART:SM00443
RGD:1311208 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG317167 HOGENOM:HOG000231726 KO:K12840
InterPro:IPR016967 PIRSF:PIRSF031066 CTD:84991 HOVERGEN:HBG059363
OMA:IPPPVYD OrthoDB:EOG48SGTF GeneTree:ENSGT00390000008837
EMBL:BC079248 IPI:IPI00464500 RefSeq:NP_001013076.1
UniGene:Rn.20694 SMR:Q6AY02 STRING:Q6AY02
Ensembl:ENSRNOT00000025550 GeneID:291295 KEGG:rno:291295
UCSC:RGD:1311208 InParanoid:Q6AY02 NextBio:632368
Genevestigator:Q6AY02 Uniprot:Q6AY02
Length = 405
Score = 316 (116.3 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 73/172 (42%), Positives = 99/172 (57%)
Query: 209 GGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIV--NAXXXXXXXXXX 266
GG T A ++M K G++EGQGLG+ EQG++T L KT +R G I+ +A
Sbjct: 235 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKGESQDAS 292
Query: 267 XXXFNGP-------PTRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPN 319
+ P PT+V+LLRNM C KYG V + +IFEI P
Sbjct: 293 KKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PG 350
Query: 320 FPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
P DEAVRIF++FER E KA++DL+GR+FGGRVV+A FY+ ++F +LA
Sbjct: 351 APDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 402
Score = 60 (26.2 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 98 EEYDPARPNDYEDY-RREKKKKAVDAEI 124
+EYDP PNDYE +R+++++ E+
Sbjct: 98 DEYDPMFPNDYEKVVKRQREERQRQREL 125
Score = 47 (21.6 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 101 DPARPNDYEDYRREKKKKAV 120
DP D EDY RE++K+++
Sbjct: 152 DPDSDED-EDYERERRKRSM 170
>UNIPROTKB|E2RMQ0 [details] [associations]
symbol:RBM17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50174 SMART:SM00361
SMART:SM00443 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12840 InterPro:IPR016967 PIRSF:PIRSF031066
CTD:84991 OMA:IPPPVYD GeneTree:ENSGT00390000008837
EMBL:AAEX03001312 RefSeq:XP_849339.1 ProteinModelPortal:E2RMQ0
Ensembl:ENSCAFT00000008395 GeneID:478014 KEGG:cfa:478014
NextBio:20853403 Uniprot:E2RMQ0
Length = 401
Score = 314 (115.6 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 72/168 (42%), Positives = 97/168 (57%)
Query: 209 GGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIV--NAXXXXXXXXXX 266
GG T A ++M K G++EGQGLG+ EQG++T L KT +R G I+ +A
Sbjct: 235 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSD 292
Query: 267 XXXFNGP---PTRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVD 323
PT+V+LLRNM C KYG V + +IFEI P P D
Sbjct: 293 SNPLTEILKCPTKVVLLRNMVGAGEVDEDLEAETKEECEKYGKVGKCVIFEI--PGAPDD 350
Query: 324 EAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
EAVRIF++FER E KA++DL+GR+FGGRVV+A FY+ ++F +LA
Sbjct: 351 EAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 398
Score = 60 (26.2 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 98 EEYDPARPNDYEDY-RREKKKKAVDAEI 124
+EYDP PNDYE +R+++++ E+
Sbjct: 98 DEYDPMFPNDYEKVVKRQREERQRQREL 125
Score = 47 (21.6 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 101 DPARPNDYEDYRREKKKKAV 120
DP D EDY RE++K+++
Sbjct: 152 DPDSDED-EDYERERRKRSM 170
>UNIPROTKB|F1RUL1 [details] [associations]
symbol:RBM17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50174 SMART:SM00361
SMART:SM00443 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR016967 PIRSF:PIRSF031066 OMA:IPPPVYD
GeneTree:ENSGT00390000008837 EMBL:CU928668
Ensembl:ENSSSCT00000012186 Uniprot:F1RUL1
Length = 406
Score = 314 (115.6 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 73/172 (42%), Positives = 99/172 (57%)
Query: 209 GGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIV--NAXXXXXXXXXX 266
GG T A ++M K G++EGQGLG+ EQG++T L KT +R G I+ +A
Sbjct: 236 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKGAPPDAA 293
Query: 267 XXXFNGP-------PTRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPN 319
+ P PT+V+LLRNM C KYG V + +IFEI P
Sbjct: 294 KKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PG 351
Query: 320 FPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
P DEAVRIF++FER E KA++DL+GR+FGGRVV+A FY+ ++F +LA
Sbjct: 352 APDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 403
Score = 60 (26.2 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 98 EEYDPARPNDYEDY-RREKKKKAVDAEI 124
+EYDP PNDYE +R+++++ E+
Sbjct: 98 DEYDPMFPNDYEKVVKRQREERQRQREL 125
Score = 47 (21.6 bits), Expect = 1.8e-31, Sum P(2) = 1.8e-31
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 101 DPARPNDYEDYRREKKKKAV 120
DP D EDY RE++K+++
Sbjct: 152 DPDSDED-EDYERERRKRSM 170
>UNIPROTKB|A7MB77 [details] [associations]
symbol:RBM17 "RBM17 protein" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50174 SMART:SM00361
SMART:SM00443 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG317167 HOGENOM:HOG000231726 KO:K12840
InterPro:IPR016967 PIRSF:PIRSF031066 CTD:84991 HOVERGEN:HBG059363
OMA:IPPPVYD OrthoDB:EOG48SGTF GeneTree:ENSGT00390000008837
EMBL:DAAA02035345 EMBL:BC151377 IPI:IPI00691962
RefSeq:NP_001094553.1 UniGene:Bt.106839 SMR:A7MB77 STRING:A7MB77
Ensembl:ENSBTAT00000029268 GeneID:512694 KEGG:bta:512694
InParanoid:A7MB77 NextBio:20870515 Uniprot:A7MB77
Length = 401
Score = 313 (115.2 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 72/168 (42%), Positives = 97/168 (57%)
Query: 209 GGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIV--NAXXXXXXXXXX 266
GG T A ++M K G++EGQGLG+ EQG++T L KT +R G I+ +A
Sbjct: 235 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDAAKKSD 292
Query: 267 XXXFNGP---PTRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVD 323
PT+V+LLRNM C KYG V + +IFEI P P D
Sbjct: 293 SNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PGAPDD 350
Query: 324 EAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
EAVRIF++FER E KA++DL+GR+FGGRVV+A FY+ ++F +LA
Sbjct: 351 EAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 398
Score = 60 (26.2 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 98 EEYDPARPNDYEDY-RREKKKKAVDAEI 124
+EYDP PNDYE +R+++++ E+
Sbjct: 98 DEYDPMFPNDYEKVVKRQREERQRQREL 125
Score = 47 (21.6 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 101 DPARPNDYEDYRREKKKKAV 120
DP D EDY RE++K+++
Sbjct: 152 DPDSDED-EDYERERRKRSM 170
>UNIPROTKB|Q96I25 [details] [associations]
symbol:RBM17 "Splicing factor 45" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000467
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50102
PROSITE:PS50174 SMART:SM00361 SMART:SM00443 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:NOG317167 HOGENOM:HOG000231726
KO:K12840 InterPro:IPR016967 PIRSF:PIRSF031066 PDB:2PEH PDBsum:2PEH
EMBL:BC007871 EMBL:BC009064 EMBL:BC039322 IPI:IPI00176706
RefSeq:NP_001139019.1 RefSeq:NP_116294.1 UniGene:Hs.498548 PDB:2PE8
PDBsum:2PE8 ProteinModelPortal:Q96I25 SMR:Q96I25 DIP:DIP-29409N
IntAct:Q96I25 MINT:MINT-3053773 STRING:Q96I25 PhosphoSite:Q96I25
DMDM:34925383 PaxDb:Q96I25 PeptideAtlas:Q96I25 PRIDE:Q96I25
DNASU:84991 Ensembl:ENST00000379888 Ensembl:ENST00000446108
GeneID:84991 KEGG:hsa:84991 UCSC:uc001ijb.3 CTD:84991
GeneCards:GC10P006130 HGNC:HGNC:16944 HPA:HPA037477 MIM:606935
neXtProt:NX_Q96I25 PharmGKB:PA134860993 HOVERGEN:HBG059363
InParanoid:Q96I25 OMA:IPPPVYD OrthoDB:EOG48SGTF PhylomeDB:Q96I25
EvolutionaryTrace:Q96I25 GenomeRNAi:84991 NextBio:75577
ArrayExpress:Q96I25 Bgee:Q96I25 CleanEx:HS_RBM17
Genevestigator:Q96I25 GermOnline:ENSG00000134453 Uniprot:Q96I25
Length = 401
Score = 313 (115.2 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 72/168 (42%), Positives = 97/168 (57%)
Query: 209 GGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIV--NAXXXXXXXXXX 266
GG T A ++M K G++EGQGLG+ EQG++T L KT +R G I+ +A
Sbjct: 235 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDASKKSD 292
Query: 267 XXXFNGP---PTRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVD 323
PT+V+LLRNM C KYG V + +IFEI P P D
Sbjct: 293 SNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PGAPDD 350
Query: 324 EAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
EAVRIF++FER E KA++DL+GR+FGGRVV+A FY+ ++F +LA
Sbjct: 351 EAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 398
Score = 60 (26.2 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 98 EEYDPARPNDYEDY-RREKKKKAVDAEI 124
+EYDP PNDYE +R+++++ E+
Sbjct: 98 DEYDPMFPNDYEKVVKRQREERQRQREL 125
Score = 47 (21.6 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 101 DPARPNDYEDYRREKKKKAV 120
DP D EDY RE++K+++
Sbjct: 152 DPDSDED-EDYERERRKRSM 170
>ZFIN|ZDB-GENE-040426-817 [details] [associations]
symbol:rbm17 "RNA binding motif protein 17"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174 SMART:SM00360
SMART:SM00443 ZFIN:ZDB-GENE-040426-817 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000231726 KO:K12840
InterPro:IPR016967 PIRSF:PIRSF031066 HSSP:P26368 CTD:84991
HOVERGEN:HBG059363 OMA:IPPPVYD GeneTree:ENSGT00390000008837
EMBL:BX842686 EMBL:BC045473 IPI:IPI00506477 RefSeq:NP_957209.1
UniGene:Dr.82331 SMR:Q7ZVN6 STRING:Q7ZVN6
Ensembl:ENSDART00000044043 GeneID:393889 KEGG:dre:393889
InParanoid:Q7ZVN6 NextBio:20814869 Uniprot:Q7ZVN6
Length = 418
Score = 219 (82.2 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 46/92 (50%), Positives = 59/92 (64%)
Query: 274 PTRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFE 333
PT+V+LLRNM C KYG V R +IFEI+ DEAVRIF++FE
Sbjct: 320 PTKVVLLRNMVGRGEVDEDLEAETKEECEKYGKVVRCVIFEIS--GVTDDEAVRIFLEFE 377
Query: 334 RSEQTTKALIDLDGRFFGGRVVRATFYDEERF 365
R E KA++DL+GR+FGGRVV+A FY+ +RF
Sbjct: 378 RVESAIKAVVDLNGRYFGGRVVKACFYNLDRF 409
Score = 118 (46.6 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 209 GGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIV 254
GG T A ++M K G++EGQGLG+ EQG++T L KT +R G I+
Sbjct: 236 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKII 279
Score = 60 (26.2 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 98 EEYDPARPNDYEDY---RREKKKKAVDAE 123
+EYDP PNDYE RE+++K + E
Sbjct: 98 DEYDPMFPNDYEKVLKRHREERQKQREQE 126
Score = 43 (20.2 bits), Expect = 8.7e-31, Sum P(3) = 8.7e-31
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 106 NDYEDYRREKKKK 118
++ EDY REK+K+
Sbjct: 164 DEEEDYEREKRKR 176
>UNIPROTKB|E1BUJ1 [details] [associations]
symbol:RBM17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000467 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50174 SMART:SM00361
SMART:SM00443 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR016967 PIRSF:PIRSF031066 OMA:IPPPVYD
GeneTree:ENSGT00390000008837 EMBL:AADN02039686 EMBL:AADN02039687
IPI:IPI00599203 Ensembl:ENSGALT00000010237 Uniprot:E1BUJ1
Length = 405
Score = 306 (112.8 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 74/173 (42%), Positives = 97/173 (56%)
Query: 209 GGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNAXXXXXXXXXXXX 268
GG T A ++M K G++EGQGLG+ EQG++T L KT +R G I+
Sbjct: 235 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKADATKKA 292
Query: 269 XFNGP-------PTRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFP 321
N P PT+V+LLRNM C KYG V + +IFEI P P
Sbjct: 293 DSN-PLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PGAP 349
Query: 322 VDEAVRIFVQFERSEQTTKALI---DLDGRFFGGRVVRATFYDEERFSKNELA 371
DEAVRIF++FER E KA+I DL+GR+FGGRVV+A FY+ ++F +LA
Sbjct: 350 DDEAVRIFLEFERVESAIKAIIAVVDLNGRYFGGRVVKACFYNLDKFRVLDLA 402
Score = 60 (26.2 bits), Expect = 5.5e-32, Sum P(2) = 5.5e-32
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 98 EEYDPARPNDYEDY-RREKKKKAVDAEI 124
+EYDP PNDYE +R+++++ E+
Sbjct: 98 DEYDPMFPNDYEKVVKRQREERQRQREL 125
Score = 47 (21.6 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 101 DPARPNDYEDYRREKKKKAV 120
DP D EDY RE++K+++
Sbjct: 152 DPDSDED-EDYERERRKRSM 170
>GENEDB_PFALCIPARUM|PF14_0513 [details] [associations]
symbol:PF14_0513 "RNA binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01585 PROSITE:PS50102
PROSITE:PS50174 SMART:SM00360 SMART:SM00443 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AE014187 KO:K12840
RefSeq:XP_001348687.1 ProteinModelPortal:Q8IKT8
EnsemblProtists:PF14_0513:mRNA GeneID:812095 KEGG:pfa:PF14_0513
EuPathDB:PlasmoDB:PF3D7_1454000 HOGENOM:HOG000282029
ProtClustDB:CLSZ2446727 Uniprot:Q8IKT8
Length = 511
Score = 215 (80.7 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 54/159 (33%), Positives = 79/159 (49%)
Query: 215 AQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNAXXXXXXXXXXXXXFN-GP 273
A RMM KMGWK+G+GLG+ +QGI PL+ +K D+R+GVIV A N
Sbjct: 352 ATRMMEKMGWKKGEGLGKDKQGIKAPLILKKVDKRSGVIVQAPVILKNNDLNNKGENLSV 411
Query: 274 P---TRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEAVRIFV 330
P TR++ L N+ +K+G + + I + + N AV+I+
Sbjct: 412 PNDCTRIVHLTNLVTPEEVDETLKEEIEEEASKFGNLLNINI--VVDKNLLDALAVKIYC 469
Query: 331 QFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNE 369
++E +Q AL GR F GR V+A+F EE + E
Sbjct: 470 EYESKDQAQNALNTFKGRTFAGRKVQASFATEEEYETLE 508
Score = 57 (25.1 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 2 LGGLYGDLPPPSDEDKPT 19
+ LYGDLPPP +K T
Sbjct: 1 MDSLYGDLPPPVSSNKKT 18
Score = 56 (24.8 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 98 EEYDPARPNDYEDYRREKKKKAV 120
E+Y+P +PND +E+K+K +
Sbjct: 210 EDYEPNKPNDLIKIIKERKRKKI 232
Score = 42 (19.8 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 99 EYDPARP-NDYED---YRREKKKKAVD 121
+Y+ R N+++D Y E+KKK D
Sbjct: 277 DYEKKRKLNEFDDLKGYDEERKKKETD 303
>UNIPROTKB|Q8IKT8 [details] [associations]
symbol:PF14_0513 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174
SMART:SM00360 SMART:SM00443 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AE014187 KO:K12840 RefSeq:XP_001348687.1
ProteinModelPortal:Q8IKT8 EnsemblProtists:PF14_0513:mRNA
GeneID:812095 KEGG:pfa:PF14_0513 EuPathDB:PlasmoDB:PF3D7_1454000
HOGENOM:HOG000282029 ProtClustDB:CLSZ2446727 Uniprot:Q8IKT8
Length = 511
Score = 215 (80.7 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 54/159 (33%), Positives = 79/159 (49%)
Query: 215 AQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNAXXXXXXXXXXXXXFN-GP 273
A RMM KMGWK+G+GLG+ +QGI PL+ +K D+R+GVIV A N
Sbjct: 352 ATRMMEKMGWKKGEGLGKDKQGIKAPLILKKVDKRSGVIVQAPVILKNNDLNNKGENLSV 411
Query: 274 P---TRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEAVRIFV 330
P TR++ L N+ +K+G + + I + + N AV+I+
Sbjct: 412 PNDCTRIVHLTNLVTPEEVDETLKEEIEEEASKFGNLLNINI--VVDKNLLDALAVKIYC 469
Query: 331 QFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNE 369
++E +Q AL GR F GR V+A+F EE + E
Sbjct: 470 EYESKDQAQNALNTFKGRTFAGRKVQASFATEEEYETLE 508
Score = 57 (25.1 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 2 LGGLYGDLPPPSDEDKPT 19
+ LYGDLPPP +K T
Sbjct: 1 MDSLYGDLPPPVSSNKKT 18
Score = 56 (24.8 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 98 EEYDPARPNDYEDYRREKKKKAV 120
E+Y+P +PND +E+K+K +
Sbjct: 210 EDYEPNKPNDLIKIIKERKRKKI 232
Score = 42 (19.8 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 99 EYDPARP-NDYED---YRREKKKKAVD 121
+Y+ R N+++D Y E+KKK D
Sbjct: 277 DYEKKRKLNEFDDLKGYDEERKKKETD 303
>FB|FBgn0086683 [details] [associations]
symbol:Spf45 "Spf45" species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IGI] [GO:0006281 "DNA repair"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000467 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50174 SMART:SM00360
SMART:SM00443 EMBL:AE014134 GO:GO:0000166 GO:GO:0006281
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
HSSP:Q01081 GO:GO:0000381 KO:K12840 InterPro:IPR016967
PIRSF:PIRSF031066 GeneTree:ENSGT00390000008837 UniGene:Dm.7003
GeneID:3355114 KEGG:dme:Dmel_CG17540 CTD:3355114
FlyBase:FBgn0086683 GenomeRNAi:3355114 NextBio:850653 EMBL:DQ295864
EMBL:BT044104 RefSeq:NP_001036426.1 SMR:Q7PL83 IntAct:Q7PL83
MINT:MINT-964924 STRING:Q7PL83 EnsemblMetazoa:FBtr0111239
UCSC:CG17540-RA InParanoid:Q7PL83 OMA:RAGFYNQ Uniprot:Q7PL83
Length = 403
Score = 176 (67.0 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 42/93 (45%), Positives = 55/93 (59%)
Query: 274 PTRVLLLRNMXXXXXXXXXXXXXXXXXC-AKYGTVTRVLIFEITEPNFPVDEAVRIFVQF 332
P++V+LLRNM C KYG V V+I E + P D AV+IFV+F
Sbjct: 307 PSKVVLLRNMVGPGDVDEELEPEVKDECNTKYGEVNSVIIHE-SFGTVPED-AVKIFVEF 364
Query: 333 ERSEQTTKALIDLDGRFFGGRVVRATFYDEERF 365
R E KA++DL+GRFFGGR VRA FY+ ++F
Sbjct: 365 RRIESAIKAVVDLNGRFFGGRQVRAGFYNYDKF 397
Score = 110 (43.8 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 213 TAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVN 255
+ A ++MAK G+K+GQGLG+ EQG+ L KT +R G I++
Sbjct: 210 SVAAKIMAKYGFKDGQGLGKSEQGMAIALQVEKTSKRGGRIIH 252
Score = 62 (26.9 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 96 VIEEYDPARPNDYEDYRRE 114
V +EYDP RPN+YE + +
Sbjct: 91 VADEYDPQRPNEYEKLKEK 109
>WB|WBGene00010233 [details] [associations]
symbol:F58B3.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000467
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01585
PROSITE:PS50102 PROSITE:PS50174 SMART:SM00360 SMART:SM00443
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG317167
KO:K12840 OMA:EEMEKCG InterPro:IPR016967 PIRSF:PIRSF031066
GeneTree:ENSGT00390000008837 EMBL:Z73427 PIR:T22894
RefSeq:NP_502198.1 ProteinModelPortal:Q20966 SMR:Q20966
PaxDb:Q20966 EnsemblMetazoa:F58B3.7.1 EnsemblMetazoa:F58B3.7.2
GeneID:178091 KEGG:cel:CELE_F58B3.7 UCSC:F58B3.7 CTD:178091
WormBase:F58B3.7 HOGENOM:HOG000017949 InParanoid:Q20966
NextBio:899674 Uniprot:Q20966
Length = 371
Score = 179 (68.1 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 54/178 (30%), Positives = 78/178 (43%)
Query: 197 GKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNA 256
GK+ + GLG+ A +M + G+KEG GLG+ EQG++T L KT R G IV
Sbjct: 203 GKATSRGLGIAAN--------IMKRHGYKEGAGLGKSEQGMSTALSIEKTGVRGGNIVAE 254
Query: 257 XXXXXXXXXXXXXFNGPPTRVLLLRNMXXXXXXXXXXXXXXXXX-----CAKYGTVTRVL 311
T++L L N+ K G V V+
Sbjct: 255 APKAPTFATNSMEAVQNATKILQLWNLTDLSEVSGEEGKKEFADEIKEEMEKCGQVVNVI 314
Query: 312 IFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNE 369
+ + E D VR+FV+F + Q KA + ++GRFFGGR V A F + ++ E
Sbjct: 315 V-HVDESQ-EEDRQVRVFVEFTNNAQAIKAFVMMNGRFFGGRSVSAGFQNVSDYNNRE 370
Score = 42 (19.8 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 99 EYDPARPNDYEDYRRE 114
EY P PN+YE +E
Sbjct: 113 EYYPMTPNNYEVVAKE 128
Score = 38 (18.4 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 38 RKPSSIFAPPQTILKPQSKPKTTQNS 63
R + APP +++P+ P+ +N+
Sbjct: 157 RSKGAAIAPPTMLMEPE--PEVIKNT 180
>DICTYBASE|DDB_G0270450 [details] [associations]
symbol:DDB_G0270450 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0270450 EMBL:AAFI02000005
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:XP_646814.1
ProteinModelPortal:Q55BL6 EnsemblProtists:DDB0233680 GeneID:8617786
KEGG:ddi:DDB_G0270450 eggNOG:NOG298667 InParanoid:Q55BL6
OMA:PNDYERT Uniprot:Q55BL6
Length = 372
Score = 142 (55.0 bits), Expect = 5.7e-11, Sum P(3) = 5.7e-11
Identities = 36/99 (36%), Positives = 47/99 (47%)
Query: 274 PTRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFE 333
PT++LLL N+ KYG V RV+I IT E VRIF+ F+
Sbjct: 279 PTKILLLLNITTRSEIDSELEEDMLDEFKKYGKVNRVVIHPITN-----QEQVRIFIYFD 333
Query: 334 RSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELAP 372
T AL ++ R+F R V A +Y E F KN+L P
Sbjct: 334 DVNSTRDALSQMNNRYFAKRKVEAHYYKENLFFKNKLDP 372
Score = 64 (27.6 bits), Expect = 5.7e-11, Sum P(3) = 5.7e-11
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 96 VIEEYDPARPNDYEDYRREKKK 117
++ EYDP PNDY+ +EK++
Sbjct: 184 ILNEYDPFIPNDYDKILKEKER 205
Score = 41 (19.5 bits), Expect = 5.7e-11, Sum P(3) = 5.7e-11
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 1 MLGGLYGDLPPPSDEDKPTNT 21
M GGLY D+ DED+ NT
Sbjct: 1 MFGGLYDDIHN-DDEDE-LNT 19
>ASPGD|ASPL0000077903 [details] [associations]
symbol:AN4398 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005622
"intracellular" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000467 InterPro:IPR012677 Pfam:PF01585 PROSITE:PS50174
SMART:SM00443 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 EMBL:AACD01000076 eggNOG:NOG317167 KO:K12840
OrthoDB:EOG4V1B89 RefSeq:XP_662002.1 ProteinModelPortal:Q5B4Y2
EnsemblFungi:CADANIAT00006059 GeneID:2872195 KEGG:ani:AN4398.2
HOGENOM:HOG000188245 OMA:QEIGEEC Uniprot:Q5B4Y2
Length = 523
Score = 91 (37.1 bits), Expect = 5.2e-09, Sum P(4) = 5.2e-09
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 301 CA-KYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATF 359
C+ KYG V RV I + P PV +FV+F +A+ L+GR F G + A F
Sbjct: 457 CSEKYGRVERVYISRESGP--PV----LVFVKFTNQLSALRAVNALEGRIFNGNKITARF 510
Query: 360 YDEERFSK 367
+D ++F +
Sbjct: 511 FDAQKFEQ 518
Score = 88 (36.0 bits), Expect = 5.2e-09, Sum P(4) = 5.2e-09
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 210 GQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRR 249
GQ A+R++AK GW +G GLG GI PL + R+
Sbjct: 348 GQKGFAERLLAKYGWTKGSGLGATGSGIAKPLQVQVEKRK 387
Score = 60 (26.2 bits), Expect = 5.2e-09, Sum P(4) = 5.2e-09
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 100 YDPARPNDYEDYRREKKK 117
YDP+RPN YE+Y+ ++
Sbjct: 144 YDPSRPNIYEEYKHSDEQ 161
Score = 39 (18.8 bits), Expect = 5.2e-09, Sum P(4) = 5.2e-09
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 157 SGEEAWKRRAAM 168
SGE+A+ RRA M
Sbjct: 224 SGEDAFARRAQM 235
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 160 (61.4 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 40/101 (39%), Positives = 55/101 (54%)
Query: 275 TRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIF-EITEPNFPVDEA---VRIFV 330
+RV++LRNM C+K+GTV+RV+IF E N DEA V+IFV
Sbjct: 536 SRVIILRNMVGPEDVDETLQEEIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFV 595
Query: 331 QFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
+F + + LDGRFFGGR V A YD+ F + +L+
Sbjct: 596 EFSAGAEAMRGKEALDGRFFGGRRVVAELYDQGIFDQGDLS 636
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 158 (60.7 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 36/96 (37%), Positives = 54/96 (56%)
Query: 277 VLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEA-VRIFVQFERS 335
V++LRNM C K+G V RV+I++ + E V+IFV+F +
Sbjct: 434 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSVA 493
Query: 336 EQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
+T KA+ DL+GR+F GR V A YD+ERF ++L+
Sbjct: 494 SETHKAIQDLNGRWFAGRKVVAEVYDQERFDNSDLS 529
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 158 (60.7 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 36/96 (37%), Positives = 54/96 (56%)
Query: 277 VLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEA-VRIFVQFERS 335
V++LRNM C K+G V RV+I++ + E V+IFV+F +
Sbjct: 468 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMA 527
Query: 336 EQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
+T KA+ L+GR+FGGR V A YD+ERF ++L+
Sbjct: 528 SETHKAIQALNGRWFGGRKVVAEVYDQERFDNSDLS 563
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 158 (60.7 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 36/96 (37%), Positives = 54/96 (56%)
Query: 277 VLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEA-VRIFVQFERS 335
V++LRNM C K+G V RV+I++ + E V+IFV+F +
Sbjct: 468 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMA 527
Query: 336 EQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
+T KA+ L+GR+FGGR V A YD+ERF ++L+
Sbjct: 528 SETHKAIQALNGRWFGGRKVVAEVYDQERFDNSDLS 563
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 152 (58.6 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 35/96 (36%), Positives = 53/96 (55%)
Query: 277 VLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEA-VRIFVQFERS 335
V++LRNM C K+G V RV+I++ + E V+IFV+F +
Sbjct: 426 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMA 485
Query: 336 EQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
+T KA+ L+GR+F GR V A YD+ERF ++L+
Sbjct: 486 SETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLS 521
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 150 (57.9 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 35/96 (36%), Positives = 53/96 (55%)
Query: 277 VLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEA-VRIFVQFERS 335
V++LRNM C K+G V RV+I++ + E V+IFV+F +
Sbjct: 434 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSVA 493
Query: 336 EQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
+T KA+ L+GR+F GR V A YD+ERF ++L+
Sbjct: 494 SETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLS 529
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 150 (57.9 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 35/96 (36%), Positives = 53/96 (55%)
Query: 277 VLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEA-VRIFVQFERS 335
V++LRNM C K+G V RV+I++ + E V+IFV+F +
Sbjct: 447 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIA 506
Query: 336 EQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
+T KA+ L+GR+F GR V A YD+ERF ++L+
Sbjct: 507 SETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLS 542
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 150 (57.9 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 35/96 (36%), Positives = 53/96 (55%)
Query: 277 VLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEA-VRIFVQFERS 335
V++LRNM C K+G V RV+I++ + E V+IFV+F +
Sbjct: 463 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIA 522
Query: 336 EQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
+T KA+ L+GR+F GR V A YD+ERF ++L+
Sbjct: 523 SETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLS 558
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 150 (57.9 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 35/96 (36%), Positives = 53/96 (55%)
Query: 277 VLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEA-VRIFVQFERS 335
V++LRNM C K+G V RV+I++ + E V+IFV+F +
Sbjct: 464 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIA 523
Query: 336 EQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
+T KA+ L+GR+F GR V A YD+ERF ++L+
Sbjct: 524 SETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLS 559
>UNIPROTKB|H0Y6J6 [details] [associations]
symbol:RBM17 "Splicing factor 45" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000467 Pfam:PF01585 PROSITE:PS50174 SMART:SM00443
GO:GO:0003676 EMBL:AL157395 HGNC:HGNC:16944
ProteinModelPortal:H0Y6J6 PRIDE:H0Y6J6 Ensembl:ENST00000447032
Bgee:H0Y6J6 Uniprot:H0Y6J6
Length = 225
Score = 118 (46.6 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 209 GGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIV 254
GG T A ++M K G++EGQGLG+ EQG++T L KT +R G I+
Sbjct: 142 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKII 185
Score = 60 (26.2 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 98 EEYDPARPNDYEDY-RREKKKKAVDAEI 124
+EYDP PNDYE +R+++++ E+
Sbjct: 5 DEYDPMFPNDYEKVVKRQREERQRQREL 32
Score = 47 (21.6 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 101 DPARPNDYEDYRREKKKKAV 120
DP D EDY RE++K+++
Sbjct: 59 DPDSDED-EDYERERRKRSM 77
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 149 (57.5 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 34/96 (35%), Positives = 52/96 (54%)
Query: 277 VLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEA-VRIFVQFERS 335
V++LRNM C K+G V RV+I++ + E V+IFV+F +
Sbjct: 442 VMVLRNMVGPEDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEVIVKIFVEFSAA 501
Query: 336 EQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
+ KA+ L+ R+FGGR V A YD+ERF ++L+
Sbjct: 502 SEMNKAIQALNNRWFGGRKVIAEVYDQERFDNSDLS 537
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 143 (55.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 35/97 (36%), Positives = 53/97 (54%)
Query: 277 VLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEA---VRIFVQFE 333
V++LRNM C KYG V RV+I++ E D+A V+IFV+F
Sbjct: 420 VMVLRNMVGPEDIDDDLEGEVMEECGKYGAVNRVIIYQ--ERQGEEDDAEIIVKIFVEFS 477
Query: 334 RSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNEL 370
+ + KA+ L+ R+F GR V A YD++RF+ ++L
Sbjct: 478 DAGEMNKAIQALNNRWFAGRKVVAELYDQDRFNSSDL 514
>UNIPROTKB|Q5W012 [details] [associations]
symbol:RBM17 "Splicing factor 45" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000467 Pfam:PF01585 PROSITE:PS50174 SMART:SM00443
GO:GO:0003676 HOGENOM:HOG000231726 InterPro:IPR016967
PIRSF:PIRSF031066 EMBL:AL157395 UniGene:Hs.498548 HGNC:HGNC:16944
HOVERGEN:HBG059363 IPI:IPI00479589 MINT:MINT-1458909
Ensembl:ENST00000437845 Uniprot:Q5W012
Length = 243
Score = 113 (44.8 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 209 GGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAG 251
GG T A ++M K G++EGQGLG+ EQG++T L KT +R G
Sbjct: 203 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGG 243
Score = 60 (26.2 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 98 EEYDPARPNDYEDY-RREKKKKAVDAEI 124
+EYDP PNDYE +R+++++ E+
Sbjct: 66 DEYDPMFPNDYEKVVKRQREERQRQREL 93
Score = 47 (21.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 101 DPARPNDYEDYRREKKKKAV 120
DP D EDY RE++K+++
Sbjct: 120 DPDSDED-EDYERERRKRSM 138
>UNIPROTKB|J9NSX2 [details] [associations]
symbol:RBM17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000467 Pfam:PF01585 PROSITE:PS50174 SMART:SM00443
GO:GO:0003676 InterPro:IPR016967 PIRSF:PIRSF031066
GeneTree:ENSGT00390000008837 EMBL:AAEX03001312
Ensembl:ENSCAFT00000047583 Uniprot:J9NSX2
Length = 343
Score = 118 (46.6 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 209 GGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIV 254
GG T A ++M K G++EGQGLG+ EQG++T L KT +R G I+
Sbjct: 235 GG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKII 278
Score = 60 (26.2 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 98 EEYDPARPNDYEDY-RREKKKKAVDAEI 124
+EYDP PNDYE +R+++++ E+
Sbjct: 98 DEYDPMFPNDYEKVVKRQREERQRQREL 125
Score = 47 (21.6 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 101 DPARPNDYEDYRREKKKKAV 120
DP D EDY RE++K+++
Sbjct: 152 DPDSDED-EDYERERRKRSM 170
>WB|WBGene00004389 [details] [associations]
symbol:rnp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0018991 GO:GO:0040010 GO:GO:0007411 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0007413 GO:GO:0040020
GO:GO:0040022 HSSP:Q9V535 EMBL:FO081580
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
InterPro:IPR006532 TIGRFAMs:TIGR01645 KO:K12838 GeneID:171922
KEGG:cel:CELE_Y47G6A.20 UCSC:Y47G6A.20b CTD:171922 NextBio:873257
RefSeq:NP_491176.1 ProteinModelPortal:Q9N3S4 SMR:Q9N3S4
STRING:Q9N3S4 PRIDE:Q9N3S4 EnsemblMetazoa:Y47G6A.20b
WormBase:Y47G6A.20b InParanoid:Q9N3S4 OMA:RFFGGNT
ArrayExpress:Q9N3S4 Uniprot:Q9N3S4
Length = 749
Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 34/91 (37%), Positives = 44/91 (48%)
Query: 275 TRVLLLRNMXXXXXXXXXXXXXXXXXCAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFER 334
+ V++LRNM C KYG V V+I NF V+IFV++
Sbjct: 657 SNVIVLRNMVTPQDIDEFLEGEIREECGKYGNVIDVVI-----ANFASSGLVKIFVKYSD 711
Query: 335 SEQTTKALIDLDGRFFGGRVVRATFYDEERF 365
S Q +A LDGRFFGG V+A YD+ F
Sbjct: 712 SMQVDRAKAALDGRFFGGNTVKAEAYDQILF 742
>FB|FBgn0034834 [details] [associations]
symbol:LS2 "Large Subunit 2" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0060968 "regulation of gene silencing"
evidence=IMP] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0033119 GO:GO:0060968
HSSP:P26368 eggNOG:NOG298004 TIGRFAMs:TIGR01642 EMBL:AY075220
ProteinModelPortal:Q8T8Y4 SMR:Q8T8Y4 STRING:Q8T8Y4 PaxDb:Q8T8Y4
PRIDE:Q8T8Y4 FlyBase:FBgn0034834 InParanoid:Q8T8Y4
OrthoDB:EOG40K6F6 ArrayExpress:Q8T8Y4 Bgee:Q8T8Y4 Uniprot:Q8T8Y4
Length = 449
Score = 128 (50.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 301 CAKYGTVTRVLIFEITEP--NFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRAT 358
CAK+G V + +I P FP ++FVQFE E + KAL L GR F GR+V +
Sbjct: 380 CAKFGEVRSI---KIPRPIGQFPKRGCGKVFVQFESVEDSQKALKALSGRKFSGRIVMTS 436
Query: 359 FYDEERFSKNEL 370
+YD E++ ++L
Sbjct: 437 YYDPEKYLADDL 448
>TAIR|locus:505006587 [details] [associations]
symbol:AT5G08535 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000467
Pfam:PF01585 PROSITE:PS50174 SMART:SM00443 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003676 EMBL:AK118260
IPI:IPI00521879 RefSeq:NP_568199.1 UniGene:At.28760 PRIDE:Q8GXG0
EnsemblPlants:AT5G08535.1 GeneID:830753 KEGG:ath:AT5G08535
TAIR:At5g08535 eggNOG:NOG301240 HOGENOM:HOG000077546
InParanoid:Q8GXG0 OMA:FFREFWP PhylomeDB:Q8GXG0
ProtClustDB:CLSN2717629 Genevestigator:Q8GXG0 Uniprot:Q8GXG0
Length = 141
Score = 104 (41.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 196 IGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGV 252
+G+S S L A +++ K GWKEG GLG EQGI PL A + GV
Sbjct: 26 MGESSGSSSSLAAINSSNIGFQLLKKHGWKEGTGLGIAEQGILVPLQAEPKHNKRGV 82
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 117 (46.2 bits), Expect = 0.00027, P = 0.00027
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 307 VTRVLIFEITEPNFPVDEA-VRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERF 365
V RV+I++ + E V+IFV+F + +T KA+ L+GR+F GR V A YD+ERF
Sbjct: 340 VNRVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKAIQALNGRWFAGRKVVAEVYDQERF 399
Query: 366 SKNELA 371
++L+
Sbjct: 400 DNSDLS 405
>UNIPROTKB|F1NFM6 [details] [associations]
symbol:PINX1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000776
"kinetochore" evidence=IEA] [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0007080 "mitotic metaphase plate congression"
evidence=IEA] [GO:0070034 "telomeric RNA binding" evidence=IEA]
InterPro:IPR000467 Pfam:PF01585 PROSITE:PS50174 SMART:SM00443
GO:GO:0005739 GO:GO:0005730 GO:GO:0000776 GO:GO:0005819
GO:GO:0000781 GO:GO:0000228 GO:GO:0007004 GO:GO:0007080
GO:GO:0070034 GeneTree:ENSGT00450000040279 EMBL:AADN02018316
EMBL:AADN02018314 EMBL:AADN02018315 IPI:IPI00598699
Ensembl:ENSGALT00000026871 OMA:QGNTEHI Uniprot:F1NFM6
Length = 99
Score = 91 (37.1 bits), Expect = 0.00080, P = 0.00079
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 216 QRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGV 252
QRM+ KMGW +G+GLG QEQG T + + + G+
Sbjct: 29 QRMLEKMGWSKGKGLGAQEQGNTEHIKVQVKNNMLGL 65
>TAIR|locus:2146839 [details] [associations]
symbol:AT5G26610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000467
InterPro:IPR007087 InterPro:IPR015880 Pfam:PF01585 PROSITE:PS00028
PROSITE:PS50174 SMART:SM00355 SMART:SM00443 EMBL:CP002688
GO:GO:0008270 GO:GO:0003676 GO:GO:0005622 InterPro:IPR022755
Pfam:PF12171 EMBL:BT026069 EMBL:AK229675 IPI:IPI00530429
RefSeq:NP_001190403.1 RefSeq:NP_850884.1 RefSeq:NP_850885.1
UniGene:At.43411 PRIDE:Q147M4 EnsemblPlants:AT5G26610.1
EnsemblPlants:AT5G26610.2 EnsemblPlants:AT5G26610.3 GeneID:832729
KEGG:ath:AT5G26610 TAIR:At5g26610 HOGENOM:HOG000083817
InParanoid:Q147M4 OMA:IRKVFYC PhylomeDB:Q147M4
ProtClustDB:CLSN2680285 Genevestigator:Q147M4 Uniprot:Q147M4
Length = 301
Score = 110 (43.8 bits), Expect = 0.00097, P = 0.00097
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 217 RMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGV 252
R++ KMGWK G+GLG+QEQGIT P+ + DRR G+
Sbjct: 72 RLLQKMGWK-GKGLGKQEQGITEPIKSGIRDRRLGL 106
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 381 282 0.00083 115 3 11 22 0.41 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 596 (63 KB)
Total size of DFA: 183 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.79u 0.11s 20.90t Elapsed: 00:00:01
Total cpu time: 20.79u 0.11s 20.90t Elapsed: 00:00:01
Start: Thu May 9 21:08:58 2013 End: Thu May 9 21:08:59 2013