BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016857
(381 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic
OS=Arabidopsis thaliana GN=DRT111 PE=2 SV=2
Length = 387
Score = 497 bits (1279), Expect = e-140, Method: Compositional matrix adjust.
Identities = 284/395 (71%), Positives = 330/395 (83%), Gaps = 23/395 (5%)
Query: 1 MLGGLYGDLPPPSDEDKPTNTTTTVWSSSAKMAPPTLRKPSSIFAPPQTILKPQSKPKTT 60
MLGGLYGDLPPP+D++KP+ +++VWSSS KMAPPTLRKP + FAPPQTIL+P +KPK
Sbjct: 1 MLGGLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPA-FAPPQTILRPLNKPKPI 59
Query: 61 QNS----LPTRPHSSPAIAPSPDDAAALPQPALVGVTSTVIEEYDPARPNDYEDYRREKK 116
++ P S + P+ +++A QPALVGVTS+VIEEYDPARPNDYE+Y+REKK
Sbjct: 60 VSAPYKPPPPSNSSQSVLIPA-NESAPSHQPALVGVTSSVIEEYDPARPNDYEEYKREKK 118
Query: 117 KKAVDAEIRRELERRRQEGEERERREREERE------NASASRLNMSGEEAWKRRAAMSS 170
+KA +AE++RE+++RRQE EER++REREERE N+ SRLN+SGEEAWKRRAAMS
Sbjct: 119 RKATEAEMKREMDKRRQEDEERDKREREEREKERERDNSDPSRLNISGEEAWKRRAAMSG 178
Query: 171 GGVPPRSPSP-PPVNVESGGGGGGFTIGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQG 229
GG + S PP NV+ GF+IGKSETSGLG+GAGGQMTAAQRMMAKMGWK+GQG
Sbjct: 179 GGSGGKGRSSSPPGNVD------GFSIGKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQG 232
Query: 230 LGRQEQGITTPLMARKTDRRAGVIVNASENKS----EKKVKSVNFNGPPTRVLLLRNMVG 285
LG+ EQGITTPLMA+KTDRRAGVIVNASENKS +K VKSVN NG PTRVLLLRNMVG
Sbjct: 233 LGKSEQGITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMVG 292
Query: 286 PGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDL 345
PG+VDDELEDEVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R E+TTKAL+DL
Sbjct: 293 PGQVDDELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDL 352
Query: 346 DGRFFGGRVVRATFYDEERFSKNELAPLPGEIPGF 380
DGR+FGGR VRATFYDEE+FSKNELAP+PGEIPG+
Sbjct: 353 DGRYFGGRTVRATFYDEEKFSKNELAPVPGEIPGY 387
>sp|Q96I25|SPF45_HUMAN Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1
Length = 401
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 140/436 (32%), Positives = 201/436 (46%), Gaps = 109/436 (25%)
Query: 5 LYGDLPPPSDEDKPTNTTTTVWSSSAKMAPPTLRKPSSIFAPPQTILKPQSKPKTTQNSL 64
LY DL + +++ T WS + K+ L+ + Q+K + T+ S
Sbjct: 3 LYDDLGVET-----SDSKTEGWSKNFKLLQSQLQVKKAALT--------QAKSQRTKQST 49
Query: 65 PTRPHSSPAIAPSPDD----------AAALPQPALVGVTSTVI-----EEYDPARPNDYE 109
P S DD AA L P G ++ + +EYDP PNDYE
Sbjct: 50 VLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYE 109
Query: 110 DYRREKKKKAVDAEIRRELERRRQEGEERERREREERENASASRL--------------- 154
K+ + R+ R++E EERE+R ++ E + +R
Sbjct: 110 KVV----KRQREERQRQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERER 165
Query: 155 ---NMSG----------------------EEAWKRRAAMSSGGVPP---------RSPSP 180
+M G EE + R+ S +PP RSP+
Sbjct: 166 RKRSMGGAAIAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTG 225
Query: 181 PPVNVESGGGGGGFTIGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLGRQEQGITTP 240
P + + GG T A ++M K G++EGQGLG+ EQG++T
Sbjct: 226 PSNSFLANMGG---------------------TVAHKIMQKYGFREGQGLGKHEQGLSTA 264
Query: 241 LMARKTDRRAGVIV--NASENKSEKKVKS---VNFNGPPTRVLLLRNMVGPGEVDDELED 295
L KT +R G I+ +A+E + KK S PT+V+LLRNMVG GEVD++LE
Sbjct: 265 LSVEKTSKRGGKIIVGDATEKDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEV 324
Query: 296 EVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVV 355
E EC KYG V + +IFEI P P DEAVRIF++FER E KA++DL+GR+FGGRVV
Sbjct: 325 ETKEECEKYGKVGKCVIFEI--PGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 382
Query: 356 RATFYDEERFSKNELA 371
+A FY+ ++F +LA
Sbjct: 383 KACFYNLDKFRVLDLA 398
>sp|Q8JZX4|SPF45_MOUSE Splicing factor 45 OS=Mus musculus GN=Rbm17 PE=1 SV=1
Length = 405
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 139/440 (31%), Positives = 201/440 (45%), Gaps = 113/440 (25%)
Query: 5 LYGDLPPPSDEDKPTNTTTTVWSSSAKMAPPTLRKPSSIFAPPQTILKPQSKPKTTQNSL 64
LY DL + +++ T WS + K+ L+ + Q+K + T+ S
Sbjct: 3 LYDDLGVET-----SDSKTEGWSKNFKLLQSQLQVKKAALT--------QAKSQRTKQST 49
Query: 65 PTRPHSSPAIAPSPDD----------AAALPQPALVGVTSTVI-----EEYDPARPNDYE 109
P S DD AA L P G ++ + +EYDP PNDYE
Sbjct: 50 VLAPVIDLKRGGSSDDRQIADTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYE 109
Query: 110 DYRREKKKKAVDAEIRRELERRRQEGEERERREREERENASASRL--------------- 154
K+ + R+ R++E EERE+R ++ E + SR
Sbjct: 110 KVV----KRQREERQRQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERER 165
Query: 155 ---NMSG----------------------EEAWKRRAAMSSGGVPP---------RSPSP 180
+M G EE + R+ S +PP RSP+
Sbjct: 166 RKRSMGGAAIAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEPDRPRSPTG 225
Query: 181 PPVNVESGGGGGGFTIGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLGRQEQGITTP 240
P + + GG T A ++M K G++EGQGLG+ EQG++T
Sbjct: 226 PSNSFLANMGG---------------------TVAHKIMQKYGFREGQGLGKHEQGLSTA 264
Query: 241 LMARKTDRRAGVIV--NASENKSEKKVKSVNFNGP-------PTRVLLLRNMVGPGEVDD 291
L KT +R G I+ +A+E + + + P PT+V+LLRNMVG GEVD+
Sbjct: 265 LSVEKTSKRGGKIIVGDATEKGEAQDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDE 324
Query: 292 ELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351
+LE E EC KYG V + +IFEI P P DEAVRIF++FER E KA++DL+GR+FG
Sbjct: 325 DLEVETKEECEKYGKVGKCVIFEI--PGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG 382
Query: 352 GRVVRATFYDEERFSKNELA 371
GRVV+A FY+ ++F +LA
Sbjct: 383 GRVVKACFYNLDKFRVLDLA 402
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 69/100 (69%), Gaps = 5/100 (5%)
Query: 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEA---VRIFVQ 331
+ V++LRNMV P ++DD+LE EV EC K+G V RV+I++ E ++A V+IFV+
Sbjct: 432 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQ--EKQGEEEDAEIIVKIFVE 489
Query: 332 FERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
F + +T KA+ DL+GR+F GR V A YD+ERF ++L+
Sbjct: 490 FSVASETHKAIQDLNGRWFAGRKVVAEVYDQERFDNSDLS 529
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 69/100 (69%), Gaps = 5/100 (5%)
Query: 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEA---VRIFVQ 331
+ V++LRNMV P ++DD+LE EV EC K+G V RV+I++ E ++A V+IFV+
Sbjct: 466 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQ--EKQGEEEDAEIIVKIFVE 523
Query: 332 FERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
F + +T KA+ L+GR+FGGR V A YD+ERF ++L+
Sbjct: 524 FSMASETHKAIQALNGRWFGGRKVVAEVYDQERFDNSDLS 563
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 69/100 (69%), Gaps = 5/100 (5%)
Query: 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEA---VRIFVQ 331
+ V++LRNMV P ++DD+LE EV EC K+G V RV+I++ E ++A V+IFV+
Sbjct: 466 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQ--EKQGEEEDAEIIVKIFVE 523
Query: 332 FERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
F + +T KA+ L+GR+FGGR V A YD+ERF ++L+
Sbjct: 524 FSMASETHKAIQALNGRWFGGRKVVAEVYDQERFDNSDLS 563
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 4/101 (3%)
Query: 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIF-EITEPNFPVDEA---VRIFV 330
+RV++LRNMVGP +VD+ L++E+ EC+K+GTV+RV+IF E N DEA V+IFV
Sbjct: 536 SRVIILRNMVGPEDVDETLQEEIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFV 595
Query: 331 QFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
+F + + LDGRFFGGR V A YD+ F + +L+
Sbjct: 596 EFSAGAEAMRGKEALDGRFFGGRRVVAELYDQGIFDQGDLS 636
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 5/100 (5%)
Query: 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEA---VRIFVQ 331
+ V++LRNMV P ++DD+LE EV EC K+G V RV+I++ E ++A V+IFV+
Sbjct: 461 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQ--EKQGEEEDAEIIVKIFVE 518
Query: 332 FERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
F + +T KA+ L+GR+F GR V A YD+ERF ++L+
Sbjct: 519 FSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLS 558
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 5/100 (5%)
Query: 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEA---VRIFVQ 331
+ V++LRNMV P ++DD+LE EV EC K+G V RV+I++ E ++A V+IFV+
Sbjct: 460 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQ--EKQGEEEDAEIIVKIFVE 517
Query: 332 FERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371
F + +T KA+ L+GR+F GR V A YD+ERF ++L+
Sbjct: 518 FSIASETHKAIQALNGRWFAGRKVVAEVYDQERFDNSDLS 557
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 67/99 (67%), Gaps = 5/99 (5%)
Query: 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEA---VRIFVQ 331
+ V++LRNMVGP ++DD+LE EV EC KYG V RV+I++ E D+A V+IFV+
Sbjct: 418 STVMVLRNMVGPEDIDDDLEGEVMEECGKYGAVNRVIIYQ--ERQGEEDDAEIIVKIFVE 475
Query: 332 FERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNEL 370
F + + KA+ L+ R+F GR V A YD++RF+ ++L
Sbjct: 476 FSDAGEMNKAIQALNNRWFAGRKVVAELYDQDRFNSSDL 514
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 265 VKSVNFNGPPTRVLLLRNMVGPGEVDDELE-----DEVGSECAKYGTVTRVLIFEITEP- 318
+ +V +GPPT VL L NMV P E+ DE E +++ EC KYG V V EI P
Sbjct: 307 LSNVVTSGPPTEVLCLLNMVTPDELRDEEEYEDILEDIKEECTKYGVVRSV---EIPRPI 363
Query: 319 -NFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNEL 370
V ++FV+F KA L GR F RVV +++D +++ + E
Sbjct: 364 EGVEVPGCGKVFVEFNSVLDCQKAQQALTGRKFSDRVVVTSYFDPDKYHRREF 416
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 232 RQEQGITTPLMARKTDRRAGVIVNASENKSEKKVKSVNFNGPPTRVLLLRNMVGPGEV-- 289
R QG + P + ++ + ++ + + +K + V PT+V+ L +V P E+
Sbjct: 433 RANQGASQP----RPEQESMLLHVQQQAQMQKLMFQVGGGALPTKVVCLTQVVSPDELRD 488
Query: 290 DDELEDEVGS---ECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD 346
D+E ED V E +YG + +V+I PV R+F++F E +TKA +
Sbjct: 489 DEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKAKNGMH 548
Query: 347 GRFFGGRVVRATFYDEERFSKNEL 370
GR F V A FY E++F++ +
Sbjct: 549 GRKFANNQVVAVFYPEDKFAEGQY 572
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 274 PTRVLLLRNMVGPGEV--DDELED---EVGSECAKYGTVTRVLIFEITEPNFPVDEAVRI 328
PT+V+ L +V E+ D+E ED ++ E KYG + +V+I PV ++
Sbjct: 445 PTKVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKV 504
Query: 329 FVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNE 369
F+++ + TKA + GR FGG V A FY E +FS E
Sbjct: 505 FLEYADVDGATKAKTAMHGRKFGGNPVVAVFYPENKFSSAE 545
>sp|P90978|U2AF2_CAEEL Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis elegans
GN=uaf-1 PE=2 SV=2
Length = 496
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 272 GPPTRVLLLRNMVGPGEV--DDELED---EVGSECAKYGTVTRVLIFEITEP--NFPVDE 324
G T +L L NMV E+ DDE E+ +V EC+KYG V + EI P + PV
Sbjct: 394 GRATEILCLMNMVTEDELKADDEYEEILEDVRDECSKYGIVRSL---EIPRPYEDHPVPG 450
Query: 325 AVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNEL 370
++FV+F + +A L GR F R V ++YD +++ +
Sbjct: 451 VGKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHNRQF 496
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 16/94 (17%)
Query: 273 PP--TRVLLLRNMVGPGEVD-----DELEDEVGSEC-AKYGTVTRVLIFEITEPNFPVDE 324
PP +R LL NM P E ELE +V EC KYG V + + PN E
Sbjct: 501 PPIRSRCALLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVV----PN----E 552
Query: 325 AVRIFVQFERSEQTTKALIDLDGRFFGGRVVRAT 358
+IFV+FE ++ KA+ L R+FGGR ++A+
Sbjct: 553 LGQIFVKFENADFAEKAITGLHQRWFGGRTIKAS 586
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 274 PTRVLLLRNMVGPGEV--DDELED---EVGSECAKYGTVTRVLIFEITEPNFPVDEAVRI 328
PT+V+ L +V E+ D+E ED ++ E KYG + +V+I PV ++
Sbjct: 438 PTKVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSGVGKV 497
Query: 329 FVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNE 369
F+++ + +TKA + GR FGG V A FY E +F+ +
Sbjct: 498 FLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKFADED 538
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 275 TRVLLLRNMVGPGEV--DDELED---EVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIF 329
T+VL L +V E+ DD+ +D ++ +EC K+G + V+I P ++F
Sbjct: 453 TKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVF 512
Query: 330 VQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNE 369
+++ + ++KA L+GR FGG V A FY E +FS+ +
Sbjct: 513 LEYADVDGSSKARQGLNGRKFGGNQVVAVFYPENKFSEGD 552
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 7/101 (6%)
Query: 275 TRVLLLRNMVGPGEVDDE------LEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRI 328
T+VL L ++ E++D+ LED + +EC K+G++ V+I + P ++
Sbjct: 471 TKVLSLTEVISADELNDDEDYQDILED-MRTECGKFGSLVNVVIPRPSPNGEPTPGVGKV 529
Query: 329 FVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNE 369
F+++ + ++KA L+GR FGG V A FY E +F + +
Sbjct: 530 FLEYADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGD 570
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 272 GPPTRVLLLRNMVGPGEVD-----DELEDEVGSECAKYGTVTRVLIFEITEP--NFPVDE 324
G T +L L NMV E+ +E+ ++V EC+KYG V + EI P + PV
Sbjct: 385 GRATEILCLMNMVTEDELRSDEDYEEILEDVREECSKYGIVRSL---EIPRPYDDHPVPG 441
Query: 325 AVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNEL 370
++FV+F + +A L GR F R V ++YD +++ +
Sbjct: 442 VGKVFVEFATTSDCQRAQAALTGRKFANRTVVTSYYDVDKYHNRQF 487
>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1
SV=1
Length = 757
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Query: 276 RVLLLRNMVGPGEVDD------ELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIF 329
RV++L+NM P + +D E+ +++ EC+K+G + ++L+F+ P+
Sbjct: 265 RVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFD-RHPDGVAS------ 317
Query: 330 VQFERSEQTTKALIDLDGRFFGGRVVRATFYD 361
V F E+ + LDGR+FGGR + A +D
Sbjct: 318 VSFREPEEADHCIQTLDGRWFGGRQITAQAWD 349
>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1
SV=4
Length = 475
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 268 VNFNGPPTRVLLLRNMVGPGEVDDE-----LEDEVGSECAKYGTVTRVLIFEITEP--NF 320
V G PT VL L NMV P E+ D+ + ++V EC+KYG V + EI P
Sbjct: 368 VQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSI---EIPRPVDGV 424
Query: 321 PVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNEL 370
V +IFV+F KA+ L GR F RVV + D + + + +
Sbjct: 425 EVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474
>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1
SV=3
Length = 475
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 268 VNFNGPPTRVLLLRNMVGPGEVDDE-----LEDEVGSECAKYGTVTRVLIFEITEP--NF 320
V G PT VL L NMV P E+ D+ + ++V EC+KYG V + EI P
Sbjct: 368 VQMGGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSI---EIPRPVDGV 424
Query: 321 PVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNEL 370
V +IFV+F KA+ L GR F RVV + D + + + +
Sbjct: 425 EVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 474
>sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2
SV=1
Length = 754
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Query: 276 RVLLLRNMVGPGEVDD------ELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIF 329
RV++++NM P + +D E+ +++ EC+K+G + ++L+F+ P A
Sbjct: 264 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFD----RHPDGVAS--- 316
Query: 330 VQFERSEQTTKALIDLDGRFFGGRVVRATFYD 361
V F E+ + LDGR+FGGR + A +D
Sbjct: 317 VSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 348
>sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1
Length = 755
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 13/92 (14%)
Query: 276 RVLLLRNMVGPGEVDD------ELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIF 329
RV++++NM P + +D E+ +++ EC+K+G + ++L+F+ P+
Sbjct: 264 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFD-RHPDGVAS------ 316
Query: 330 VQFERSEQTTKALIDLDGRFFGGRVVRATFYD 361
V F E+ + LDGR+FGGR + A +D
Sbjct: 317 VSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 348
>sp|Q99KG3|RBM10_MOUSE RNA-binding protein 10 OS=Mus musculus GN=Rbm10 PE=1 SV=1
Length = 930
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 178 PSPPPVNVESGGGGGGFTIGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLGRQEQGI 237
P PP GG ++ + + GLG+ RM+ MGWKEG GLGR++QGI
Sbjct: 828 PEPPEPKRRKYGGISTASVDFEQPTRDGLGSD---NIGSRMLQAMGWKEGSGLGRKKQGI 884
Query: 238 TTPLMARKTDRRAGV 252
TP+ A+ R +G+
Sbjct: 885 VTPIEAQTRVRGSGL 899
>sp|P98175|RBM10_HUMAN RNA-binding protein 10 OS=Homo sapiens GN=RBM10 PE=1 SV=3
Length = 930
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 178 PSPPPVNVESGGGGGGFTIGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLGRQEQGI 237
P PP GG ++ + + GLG+ RM+ MGWKEG GLGR++QGI
Sbjct: 828 PEPPEPKRRKYGGISTASVDFEQPTRDGLGSD---NIGSRMLQAMGWKEGSGLGRKKQGI 884
Query: 238 TTPLMARKTDRRAGV 252
TP+ A+ R +G+
Sbjct: 885 VTPIEAQTRVRGSGL 899
>sp|P70501|RBM10_RAT RNA-binding protein 10 OS=Rattus norvegicus GN=Rbm10 PE=2 SV=1
Length = 852
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 178 PSPPPVNVESGGGGGGFTIGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLGRQEQGI 237
P PP GG ++ + + GLG+ RM+ MGWKEG GLGR++QGI
Sbjct: 750 PEPPEPKRRKYGGISTASVDFEQPTRDGLGSD---NIGSRMLQAMGWKEGSGLGRKKQGI 806
Query: 238 TTPLMARKTDRRAGV 252
TP+ A+ R +G+
Sbjct: 807 VTPIEAQTRVRGSGL 821
>sp|A0JMV4|RBM5A_XENLA RNA-binding protein 5-A OS=Xenopus laevis GN=rbm5-a PE=2 SV=1
Length = 833
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 217 RMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGV 252
+M+ MGWKEG GLGR+ QGIT P+ A+ R AG+
Sbjct: 767 KMLQAMGWKEGSGLGRKSQGITAPIQAQVRMRGAGL 802
>sp|A4IGK4|RBM5_XENTR RNA-binding protein 5 OS=Xenopus tropicalis GN=rbm5 PE=2 SV=1
Length = 838
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 217 RMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGV 252
+M+ MGWKEG GLGR+ QGIT P+ A+ R AG+
Sbjct: 772 KMLQAMGWKEGSGLGRKSQGITAPIQAQVRMRGAGL 807
>sp|Q6DDU9|RBM5B_XENLA RNA-binding protein 5-B OS=Xenopus laevis GN=rbm5-b PE=2 SV=1
Length = 749
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 217 RMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGV 252
+M+ MGWKEG GLGR+ QGIT P+ A+ R AG+
Sbjct: 683 KMLQAMGWKEGSGLGRKSQGITAPIQAQVRMRGAGL 718
>sp|Q6FP19|SQS1_CANGA Protein SQS1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=SQS1 PE=3 SV=1
Length = 808
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 173 VPPRSPSPPPVNVESGGGG--GGFTIGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGL 230
+ R P + SG G F + + E G GQ +RM+ K+GW G+GL
Sbjct: 708 IDVRRPKEDAIKENSGRRGPTAKFHVKEGEVVGENAPEIGQDNIGRRMLEKLGWSSGEGL 767
Query: 231 GRQ-EQGITTPLMARKTDRRAGV 252
G +GI+ P+MAR ++G+
Sbjct: 768 GAHGNKGISIPVMARVKKSKSGL 790
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 275 TRVLLLRNMVGPGEVDDELE-----DEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIF 329
T V+ L +V E+ D+ E +++ E K+G +T V+I + PV ++F
Sbjct: 471 TTVVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVF 530
Query: 330 VQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNEL 370
+++ ++ +T+A ++GR FGG V A +Y E++F + +
Sbjct: 531 LKYADTDGSTRARFGMNGRKFGGNEVVAVYYPEDKFEQGDY 571
>sp|O43120|UAP2_SCHPO Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=uap2 PE=1 SV=1
Length = 367
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 14/109 (12%)
Query: 275 TRVLLLRNMVGPGEVDD------ELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRI 328
++++L+++ E+D +L+D++ E K G VT V++++ EP+ V
Sbjct: 248 NKIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNVVLYD-KEPDGVVT----- 301
Query: 329 FVQFERSEQTTKALIDLDGRFFGGRVVRATFYD-EERFSKNELAPLPGE 376
V+F +E+ + + GR+F GRVV A+ YD + RF K+ L E
Sbjct: 302 -VRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLDDE 349
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 272 GPPTRVLLLRNMVGPGEVDD-----ELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAV 326
G PT+++ L +V ++ D E+ +++ E K+G + V+I + P
Sbjct: 484 GTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVG 543
Query: 327 RIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNE 369
++F+++ + ++KA ++GR FGG V A +Y E+++++ +
Sbjct: 544 KVFLEYADVDGSSKARSGMNGRKFGGNQVVAVYYPEDKYAQGD 586
>sp|P53866|SQS1_YEAST Protein SQS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SQS1 PE=1 SV=1
Length = 767
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 192 GGFTIGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLGRQ-EQGITTPLMARKTDRRA 250
G F + + E G G +RM+ K+GWK G+GLG Q +GI+ P+ A+ R+
Sbjct: 701 GKFHVKEGEIVGQNAPEIGNENIGRRMLEKLGWKSGEGLGIQGNKGISEPIFAKIKKNRS 760
Query: 251 GV 252
G+
Sbjct: 761 GL 762
>sp|A6ZRL6|SQS1_YEAS7 Protein SQS1 OS=Saccharomyces cerevisiae (strain YJM789) GN=SQS1
PE=3 SV=1
Length = 767
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 192 GGFTIGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLGRQ-EQGITTPLMARKTDRRA 250
G F + + E G G +RM+ K+GWK G+GLG Q +GI+ P+ A+ R+
Sbjct: 701 GKFHVKEGEIVGQNAPEIGNENIGRRMLEKLGWKSGEGLGIQGNKGISEPIFAKIKKNRS 760
Query: 251 GV 252
G+
Sbjct: 761 GL 762
>sp|Q4V842|GPTC4_XENLA G patch domain-containing protein 4 OS=Xenopus laevis GN=gpatch4
PE=2 SV=1
Length = 324
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 212 MTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNASE 258
M A+ M K GWKEG+GLGR+E GI + + AGV N++E
Sbjct: 12 MKFAEEQMHKHGWKEGKGLGRRENGICEAIKVKVKCDHAGVGHNSAE 58
>sp|P11365|GAG_IPMA Retrovirus-related Gag polyprotein OS=Mouse intracisternal
a-particle MIA14 GN=gag PE=4 SV=2
Length = 827
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 208 AGGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGV 252
+GG A+ +MAKMG+KEG+GLG QEQG P+ R G+
Sbjct: 780 SGGYSAKAKNIMAKMGYKEGKGLGHQEQGRIEPISPNGNQDRQGL 824
>sp|P52756|RBM5_HUMAN RNA-binding protein 5 OS=Homo sapiens GN=RBM5 PE=1 SV=2
Length = 815
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 217 RMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGV 252
+M+ MGW+EG GLGR+ QGIT P+ A+ + AG+
Sbjct: 749 KMLQAMGWREGSGLGRKCQGITAPIEAQVRLKGAGL 784
>sp|Q1RMU5|RBM5_BOVIN RNA-binding protein 5 OS=Bos taurus GN=RBM5 PE=2 SV=1
Length = 815
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 217 RMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGV 252
+M+ MGW+EG GLGR+ QGIT P+ A+ + AG+
Sbjct: 749 KMLQAMGWREGSGLGRKCQGITAPIEAQVRLKGAGL 784
>sp|B2GV05|RBM5_RAT RNA-binding protein 5 OS=Rattus norvegicus GN=Rbm5 PE=2 SV=1
Length = 815
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 217 RMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGV 252
+M+ MGW+EG GLGR+ QGIT P+ A+ + AG+
Sbjct: 749 KMLQAMGWREGSGLGRKCQGITAPIEAQVRLKGAGL 784
>sp|Q91YE7|RBM5_MOUSE RNA-binding protein 5 OS=Mus musculus GN=Rbm5 PE=1 SV=1
Length = 815
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 217 RMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGV 252
+M+ MGW+EG GLGR+ QGIT P+ A+ + AG+
Sbjct: 749 KMLQAMGWREGSGLGRKCQGITAPIEAQVRLKGAGL 784
>sp|Q9NAA5|MTR1_CAEEL Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1
OS=Caenorhabditis elegans GN=Y53F4B.13 PE=3 SV=3
Length = 918
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 212 MTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNA 256
+T A+R+MA MG K G+GLG+ QGI+ P+ + R G+ NA
Sbjct: 87 LTVAERLMAAMGHKAGEGLGKHGQGISEPIASSTQRGRTGLGHNA 131
>sp|Q63285|UHMK1_RAT Serine/threonine-protein kinase Kist OS=Rattus norvegicus GN=Uhmk1
PE=1 SV=1
Length = 419
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 15/94 (15%)
Query: 274 PTRVLLLRNMVGPG--EVDDELED---EVGSECAKYGTVTRVLIFEITEPNFPVDEAVR- 327
PT VL L N++ E +DE ED +V EC KYG V +L+ P + R
Sbjct: 319 PTPVLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLV--------PKENPGRG 370
Query: 328 -IFVQFERSEQTTKALIDLDGRFFGGRVVRATFY 360
+FV++ + + A L GR F G+ V ATFY
Sbjct: 371 QVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFY 404
>sp|P97343|UHMK1_MOUSE Serine/threonine-protein kinase Kist OS=Mus musculus GN=Uhmk1 PE=1
SV=3
Length = 419
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 274 PTRVLLLRNMVGPG--EVDDELED---EVGSECAKYGTVTRVLIFEITEPNFPVDEAVR- 327
PT VL L N++ E +DE ED +V EC KYG V +L+ P + R
Sbjct: 319 PTPVLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLV--------PKENPGRG 370
Query: 328 -IFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNEL 370
+FV++ + + A L GR F G+ V ATFY + + L
Sbjct: 371 QVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYL 414
>sp|A8XYX3|MTR1B_CAEBR Inactive cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1B
OS=Caenorhabditis briggsae GN=CBG20907 PE=3 SV=2
Length = 846
Score = 38.5 bits (88), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 211 QMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNASENKSEKK 264
Q T A++ M +MG+K G+GLG+ +QGI P+ + +AG+ ++ +E K
Sbjct: 44 QKTKAEKKMERMGYKAGEGLGKNKQGIQEPIAISFREGKAGLGHEQWDDSTENK 97
>sp|A4UMC6|TFP11_MONDO Tuftelin-interacting protein 11 OS=Monodelphis domestica GN=TFIP11
PE=2 SV=1
Length = 834
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 189 GGGGGFT-IGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTD 247
GG FT G E G+G Q+++ KMG+ G+GLG+ QGI P+ A++
Sbjct: 133 GGAKSFTDFGSWERHTKGIG--------QKLLQKMGYVPGKGLGKNAQGIINPIEAKQRK 184
Query: 248 RRAGVIVNASENKSE 262
+ V SE ++
Sbjct: 185 GKGAVGAYGSERTTQ 199
>sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus
GN=Cherp PE=1 SV=1
Length = 936
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 210 GQMTAAQRMMAKMGWKEGQGLGRQEQGITTPL----MARKTDRRAGVIVNASE-NKSEKK 264
G+ +M+ KMGW GLG +EQGI P+ + K D+ GV V + ++ ++
Sbjct: 849 GEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRR 908
Query: 265 VKSVNF 270
KS +F
Sbjct: 909 NKSYSF 914
>sp|Q8IWX8|CHERP_HUMAN Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens
GN=CHERP PE=1 SV=3
Length = 916
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 210 GQMTAAQRMMAKMGWKEGQGLGRQEQGITTPL----MARKTDRRAGVIVNASE-NKSEKK 264
G+ +M+ KMGW GLG +EQGI P+ + K D+ GV V + ++ ++
Sbjct: 840 GEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRR 899
Query: 265 VKSVNF 270
KS +F
Sbjct: 900 NKSYSF 905
>sp|Q6DI35|TFP11_DANRE Tuftelin-interacting protein 11 OS=Danio rerio GN=tfip11 PE=1 SV=1
Length = 832
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 187 SGGGGGGFTIGKSETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKT 246
+GG G +G E G+G Q+++ KMG+ G+GLG+ QGI P+ A+
Sbjct: 132 AGGIRTGQDLGNWEKHTRGIG--------QKLLQKMGYVPGKGLGKNAQGIVNPIEAKLR 183
Query: 247 DRRAGVIVNASE 258
+ V SE
Sbjct: 184 KGKGAVGAYGSE 195
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,479,642
Number of Sequences: 539616
Number of extensions: 7434966
Number of successful extensions: 57018
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 1034
Number of HSP's that attempted gapping in prelim test: 46171
Number of HSP's gapped (non-prelim): 8495
length of query: 381
length of database: 191,569,459
effective HSP length: 119
effective length of query: 262
effective length of database: 127,355,155
effective search space: 33367050610
effective search space used: 33367050610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)