Query 016857
Match_columns 381
No_of_seqs 328 out of 1735
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:26:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1996 mRNA splicing factor [ 100.0 3.9E-72 8.4E-77 537.2 22.9 354 3-371 1-375 (378)
2 TIGR01645 half-pint poly-U bin 99.9 9.6E-23 2.1E-27 215.7 11.4 99 273-371 512-611 (612)
3 KOG0124 Polypyrimidine tract-b 99.8 2.2E-19 4.7E-24 178.0 8.8 100 272-371 443-543 (544)
4 KOG0120 Splicing factor U2AF, 99.8 1.7E-19 3.7E-24 186.4 7.6 102 269-370 393-499 (500)
5 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.3E-17 2.9E-22 171.2 11.3 101 270-370 404-509 (509)
6 KOG0147 Transcriptional coacti 99.7 3.2E-17 7E-22 168.9 5.9 88 273-368 441-533 (549)
7 TIGR01622 SF-CC1 splicing fact 99.7 3E-16 6.5E-21 159.3 10.8 90 272-368 359-453 (457)
8 KOG1548 Transcription elongati 99.6 7.7E-15 1.7E-19 144.9 8.3 89 273-368 263-358 (382)
9 smart00361 RRM_1 RNA recogniti 99.4 1.1E-12 2.3E-17 102.0 9.0 67 291-358 3-70 (70)
10 PF01585 G-patch: G-patch doma 99.3 1.3E-12 2.8E-17 94.8 3.1 43 212-254 2-44 (45)
11 KOG2202 U2 snRNP splicing fact 99.2 2.7E-12 5.9E-17 122.9 0.6 93 272-368 40-153 (260)
12 PF13893 RRM_5: RNA recognitio 99.2 1.7E-10 3.8E-15 85.3 8.2 56 297-360 1-56 (56)
13 smart00443 G_patch glycine ric 99.1 5.8E-11 1.3E-15 86.4 3.4 44 211-254 3-46 (47)
14 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.0 1.8E-09 3.8E-14 105.9 11.6 82 273-362 267-348 (352)
15 PLN03134 glycine-rich RNA-bind 98.9 1.1E-08 2.4E-13 90.8 11.7 82 273-362 32-113 (144)
16 KOG0107 Alternative splicing f 98.8 1.1E-08 2.3E-13 94.0 7.5 73 277-362 12-84 (195)
17 PF00076 RRM_1: RNA recognitio 98.8 9.1E-08 2E-12 71.6 10.2 59 294-356 12-70 (70)
18 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.7 8.3E-08 1.8E-12 94.1 10.9 79 275-361 3-81 (352)
19 PF14259 RRM_6: RNA recognitio 98.7 1.7E-07 3.8E-12 71.3 9.3 70 278-356 1-70 (70)
20 KOG2809 Telomerase elongation 98.7 1.4E-08 2.9E-13 100.9 3.3 51 207-257 21-71 (326)
21 smart00360 RRM RNA recognition 98.6 1.8E-07 3.9E-12 68.1 8.3 61 294-357 10-70 (71)
22 KOG0114 Predicted RNA-binding 98.6 1.9E-07 4.1E-12 79.7 8.7 89 270-369 13-102 (124)
23 KOG2184 Tuftelin-interacting p 98.6 2.2E-08 4.8E-13 108.3 3.1 53 207-259 111-163 (767)
24 KOG4207 Predicted splicing fac 98.6 7.2E-08 1.6E-12 90.7 5.0 63 295-360 28-90 (256)
25 TIGR01659 sex-lethal sex-letha 98.5 4.9E-07 1.1E-11 91.1 10.5 82 273-362 105-186 (346)
26 TIGR01628 PABP-1234 polyadenyl 98.5 4.6E-07 1E-11 95.3 10.7 80 274-362 284-363 (562)
27 KOG2185 Predicted RNA-processi 98.5 3.9E-08 8.4E-13 99.6 1.7 51 199-249 284-334 (486)
28 smart00362 RRM_2 RNA recogniti 98.5 9.1E-07 2E-11 64.6 8.3 70 278-357 2-71 (72)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.4 1.6E-06 3.6E-11 90.2 12.4 79 272-362 272-350 (481)
30 cd00590 RRM RRM (RNA recogniti 98.4 1.7E-06 3.7E-11 63.5 9.0 62 294-359 13-74 (74)
31 PLN03120 nucleic acid binding 98.4 1.3E-06 2.8E-11 84.9 10.5 76 275-362 4-79 (260)
32 TIGR01622 SF-CC1 splicing fact 98.4 1.4E-06 3E-11 88.9 11.1 80 274-361 185-264 (457)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.4 1.2E-06 2.5E-11 91.3 10.4 75 274-362 1-77 (481)
34 TIGR01659 sex-lethal sex-letha 98.4 1.7E-06 3.8E-11 87.1 10.9 81 275-363 193-275 (346)
35 TIGR01648 hnRNP-R-Q heterogene 98.4 1.3E-06 2.9E-11 93.3 10.2 73 274-362 232-306 (578)
36 KOG0122 Translation initiation 98.3 2E-06 4.3E-11 82.7 9.0 79 275-361 189-267 (270)
37 KOG3673 FtsJ-like RNA methyltr 98.3 6.3E-07 1.4E-11 94.0 5.4 47 211-257 82-128 (845)
38 TIGR01642 U2AF_lg U2 snRNP aux 98.3 4.8E-06 1E-10 86.0 11.5 80 274-361 294-373 (509)
39 KOG0148 Apoptosis-promoting RN 98.3 1.3E-06 2.9E-11 84.9 6.1 74 286-362 67-141 (321)
40 TIGR01645 half-pint poly-U bin 98.2 6.7E-06 1.4E-10 88.4 11.1 80 274-361 203-282 (612)
41 TIGR01628 PABP-1234 polyadenyl 98.2 7E-06 1.5E-10 86.4 11.1 78 277-362 2-79 (562)
42 KOG0113 U1 small nuclear ribon 98.2 6.9E-06 1.5E-10 80.9 9.5 82 271-360 97-178 (335)
43 KOG0125 Ataxin 2-binding prote 98.2 3.1E-06 6.7E-11 84.2 6.9 78 276-364 97-175 (376)
44 COG0724 RNA-binding proteins ( 98.2 9.4E-06 2E-10 72.8 9.2 79 275-361 115-193 (306)
45 KOG0127 Nucleolar protein fibr 98.1 6.1E-06 1.3E-10 86.6 8.4 84 275-367 117-201 (678)
46 PLN03121 nucleic acid binding 98.1 2.2E-05 4.8E-10 75.6 10.5 76 275-362 5-80 (243)
47 KOG4368 Predicted RNA binding 98.1 2.2E-06 4.7E-11 90.3 3.9 34 209-243 684-717 (757)
48 KOG0965 Predicted RNA-binding 98.1 1.9E-06 4.1E-11 92.8 3.1 44 212-255 906-950 (988)
49 PF12656 G-patch_2: DExH-box s 98.0 5.7E-06 1.2E-10 66.8 3.7 45 212-256 30-74 (77)
50 KOG0148 Apoptosis-promoting RN 98.0 1.5E-05 3.1E-10 77.9 7.1 74 275-362 164-237 (321)
51 KOG0121 Nuclear cap-binding pr 97.9 3.2E-05 7E-10 68.4 7.4 87 274-368 35-125 (153)
52 KOG0108 mRNA cleavage and poly 97.9 2E-05 4.3E-10 81.8 7.1 81 276-364 19-99 (435)
53 KOG0117 Heterogeneous nuclear 97.9 3.4E-05 7.3E-10 79.5 8.5 71 276-362 260-330 (506)
54 KOG0144 RNA-binding protein CU 97.9 1.6E-05 3.4E-10 81.6 6.0 69 293-365 137-208 (510)
55 KOG0105 Alternative splicing f 97.8 4.4E-05 9.5E-10 71.3 6.9 80 272-362 3-82 (241)
56 KOG4206 Spliceosomal protein s 97.8 6.5E-05 1.4E-09 71.4 8.0 83 273-362 7-89 (221)
57 TIGR01648 hnRNP-R-Q heterogene 97.8 7.8E-05 1.7E-09 80.0 9.0 75 276-359 59-134 (578)
58 KOG0130 RNA-binding protein RB 97.8 6E-05 1.3E-09 67.3 6.4 78 275-360 72-149 (170)
59 PLN03213 repressor of silencin 97.8 7.4E-05 1.6E-09 78.0 7.9 76 275-362 10-87 (759)
60 KOG0144 RNA-binding protein CU 97.7 7.7E-05 1.7E-09 76.7 6.9 70 294-366 48-120 (510)
61 KOG0145 RNA-binding protein EL 97.6 0.00013 2.7E-09 71.3 7.0 81 275-362 40-120 (360)
62 KOG0127 Nucleolar protein fibr 97.6 0.0002 4.2E-09 75.6 8.6 79 275-361 292-376 (678)
63 KOG0110 RNA-binding protein (R 97.6 0.00016 3.5E-09 77.9 7.9 79 278-361 518-596 (725)
64 KOG4208 Nucleolar RNA-binding 97.6 0.00017 3.7E-09 68.0 6.9 67 294-363 63-130 (214)
65 KOG0126 Predicted RNA-binding 97.5 1.3E-05 2.8E-10 74.5 -0.9 79 275-361 35-113 (219)
66 KOG0123 Polyadenylate-binding 97.5 0.00029 6.3E-09 71.8 8.2 77 278-365 79-155 (369)
67 COG5175 MOT2 Transcriptional r 97.5 0.00032 6.9E-09 70.5 7.8 74 299-373 139-216 (480)
68 KOG0145 RNA-binding protein EL 97.4 0.00099 2.1E-08 65.2 9.6 79 275-361 278-356 (360)
69 KOG0109 RNA-binding protein LA 97.4 0.0002 4.2E-09 70.8 4.7 73 273-361 76-148 (346)
70 KOG0149 Predicted RNA-binding 97.4 0.00032 6.9E-09 67.4 6.0 67 292-362 24-90 (247)
71 KOG0111 Cyclophilin-type pepti 97.4 0.0004 8.7E-09 66.4 6.4 92 272-372 7-99 (298)
72 KOG2384 Major histocompatibili 97.3 0.00011 2.4E-09 68.9 1.8 45 212-256 128-172 (223)
73 KOG0415 Predicted peptidyl pro 97.3 0.00049 1.1E-08 69.6 6.5 63 296-361 255-317 (479)
74 KOG0131 Splicing factor 3b, su 97.1 0.00098 2.1E-08 62.1 6.4 76 277-361 11-87 (203)
75 KOG0117 Heterogeneous nuclear 97.1 0.0012 2.5E-08 68.5 7.4 66 292-360 95-161 (506)
76 KOG0146 RNA-binding protein ET 97.1 0.0012 2.5E-08 64.9 6.8 69 293-365 32-103 (371)
77 KOG2314 Translation initiation 97.0 0.003 6.5E-08 67.1 9.3 90 274-367 57-149 (698)
78 KOG4660 Protein Mei2, essentia 96.9 0.00076 1.6E-08 71.2 3.6 72 272-356 72-143 (549)
79 KOG0154 RNA-binding protein RB 96.9 0.0014 3E-08 70.2 5.4 46 210-255 510-555 (573)
80 KOG0147 Transcriptional coacti 96.6 0.0036 7.9E-08 66.1 6.3 82 272-362 276-357 (549)
81 KOG0153 Predicted RNA-binding 96.6 0.0074 1.6E-07 61.0 8.1 75 274-362 227-302 (377)
82 KOG0124 Polypyrimidine tract-b 96.6 0.0029 6.2E-08 64.4 4.9 61 295-358 128-188 (544)
83 KOG4661 Hsp27-ERE-TATA-binding 96.5 0.0053 1.1E-07 65.5 6.3 64 295-361 420-483 (940)
84 KOG0123 Polyadenylate-binding 96.4 0.0076 1.6E-07 61.6 7.2 64 293-362 11-74 (369)
85 KOG0109 RNA-binding protein LA 96.3 0.0069 1.5E-07 60.1 5.7 56 294-360 16-71 (346)
86 PF08952 DUF1866: Domain of un 96.3 0.028 6E-07 50.8 9.1 80 270-362 22-106 (146)
87 KOG0110 RNA-binding protein (R 96.2 0.0068 1.5E-07 65.8 5.4 79 277-363 615-693 (725)
88 KOG1994 Predicted RNA binding 96.1 0.0018 4E-08 62.0 0.7 44 213-256 82-128 (268)
89 KOG4212 RNA-binding protein hn 96.1 0.013 2.7E-07 61.0 6.5 74 274-360 535-608 (608)
90 KOG0146 RNA-binding protein ET 96.0 0.0058 1.3E-07 60.1 3.4 63 295-360 300-362 (371)
91 KOG0106 Alternative splicing f 95.8 0.0065 1.4E-07 58.0 3.1 60 294-364 15-74 (216)
92 KOG0131 Splicing factor 3b, su 95.8 0.016 3.5E-07 54.2 5.3 68 288-361 107-175 (203)
93 PF15023 DUF4523: Protein of u 95.8 0.058 1.3E-06 48.9 8.6 63 282-360 97-159 (166)
94 PF11608 Limkain-b1: Limkain b 95.8 0.066 1.4E-06 44.5 8.3 72 277-362 4-76 (90)
95 KOG2416 Acinus (induces apopto 95.8 0.0071 1.5E-07 64.7 3.3 94 271-378 440-539 (718)
96 KOG1190 Polypyrimidine tract-b 95.8 0.03 6.5E-07 57.9 7.6 75 275-361 297-371 (492)
97 PF05172 Nup35_RRM: Nup53/35/4 95.6 0.066 1.4E-06 45.4 7.8 69 292-361 17-90 (100)
98 KOG4315 G-patch nucleic acid b 95.4 0.018 3.9E-07 59.5 4.7 44 213-257 155-198 (455)
99 KOG4209 Splicing factor RNPS1, 95.4 0.018 4E-07 55.4 4.5 80 274-362 100-179 (231)
100 KOG0132 RNA polymerase II C-te 95.3 0.05 1.1E-06 59.9 7.7 73 274-360 420-492 (894)
101 KOG4212 RNA-binding protein hn 95.0 0.092 2E-06 54.9 8.3 81 274-362 43-123 (608)
102 PF04847 Calcipressin: Calcipr 94.9 0.094 2E-06 48.9 7.3 66 291-365 6-73 (184)
103 KOG4454 RNA binding protein (R 94.8 0.018 3.8E-07 55.4 2.2 81 273-363 7-87 (267)
104 KOG1456 Heterogeneous nuclear 94.7 0.12 2.5E-06 53.2 8.1 81 273-365 118-201 (494)
105 KOG0533 RRM motif-containing p 94.1 0.14 3E-06 49.9 6.8 69 293-365 96-164 (243)
106 PF08777 RRM_3: RNA binding mo 94.0 0.14 3E-06 43.4 5.9 72 277-362 3-79 (105)
107 PF14605 Nup35_RRM_2: Nup53/35 93.8 0.16 3.4E-06 38.0 5.1 43 291-342 11-53 (53)
108 KOG1190 Polypyrimidine tract-b 93.7 0.11 2.4E-06 53.9 5.5 73 278-362 153-227 (492)
109 KOG1855 Predicted RNA-binding 93.4 0.1 2.2E-06 54.3 4.7 68 274-346 230-307 (484)
110 KOG2068 MOT2 transcription fac 93.2 0.033 7.1E-07 56.1 0.8 86 289-374 89-177 (327)
111 PF04059 RRM_2: RNA recognitio 92.9 1.2 2.7E-05 37.5 9.8 78 277-360 3-84 (97)
112 KOG0226 RNA-binding proteins [ 92.9 0.089 1.9E-06 51.6 3.2 57 299-358 209-265 (290)
113 KOG4205 RNA-binding protein mu 92.5 0.099 2.2E-06 52.5 3.2 64 291-358 17-80 (311)
114 KOG0106 Alternative splicing f 91.5 0.12 2.6E-06 49.4 2.4 61 294-365 113-173 (216)
115 KOG2138 Predicted RNA binding 91.4 0.11 2.3E-06 56.9 2.1 25 207-231 143-167 (883)
116 PF15519 RBM39linker: linker b 90.7 0.15 3.2E-06 40.9 1.7 18 272-289 51-68 (73)
117 KOG0151 Predicted splicing reg 90.6 0.55 1.2E-05 51.7 6.5 82 274-360 173-254 (877)
118 PF07576 BRAP2: BRCA1-associat 89.2 3 6.5E-05 35.9 8.7 57 306-367 40-99 (110)
119 KOG4285 Mitotic phosphoprotein 88.9 0.72 1.6E-05 46.4 5.3 52 296-357 212-263 (350)
120 KOG4205 RNA-binding protein mu 87.9 0.6 1.3E-05 47.0 4.2 66 293-362 110-175 (311)
121 KOG4307 RNA binding protein RB 87.4 1.9 4.2E-05 47.6 7.8 77 275-359 867-943 (944)
122 KOG1548 Transcription elongati 86.6 1.8 3.9E-05 44.2 6.7 78 274-360 133-218 (382)
123 KOG0116 RasGAP SH3 binding pro 86.5 1.3 2.9E-05 46.3 5.9 72 278-358 291-362 (419)
124 PF11767 SET_assoc: Histone ly 86.4 2.5 5.5E-05 33.3 6.0 51 294-356 14-64 (66)
125 KOG1995 Conserved Zn-finger pr 85.3 0.77 1.7E-05 46.8 3.3 59 309-370 103-164 (351)
126 KOG3152 TBP-binding protein, a 84.9 0.6 1.3E-05 45.9 2.3 76 275-355 74-158 (278)
127 KOG1457 RNA binding protein (c 82.0 7.4 0.00016 38.0 8.3 78 296-375 50-131 (284)
128 KOG4206 Spliceosomal protein s 82.0 4.3 9.4E-05 39.1 6.7 76 272-360 143-219 (221)
129 KOG4210 Nuclear localization s 81.4 1 2.2E-05 44.8 2.3 75 294-372 199-273 (285)
130 KOG1456 Heterogeneous nuclear 81.2 6.6 0.00014 40.8 8.0 78 273-362 285-362 (494)
131 KOG1457 RNA binding protein (c 78.1 3.4 7.4E-05 40.3 4.6 65 274-350 209-273 (284)
132 KOG4676 Splicing factor, argin 77.7 4.2 9E-05 42.4 5.4 81 276-362 8-88 (479)
133 KOG2591 c-Mpl binding protein, 76.6 6.7 0.00015 42.5 6.7 76 273-362 172-251 (684)
134 KOG1994 Predicted RNA binding 73.4 1.7 3.7E-05 42.2 1.3 44 213-256 39-82 (268)
135 KOG0120 Splicing factor U2AF, 71.3 4 8.8E-05 43.7 3.6 67 294-363 303-369 (500)
136 KOG1365 RNA-binding protein Fu 59.7 19 0.00042 37.7 5.7 84 274-366 279-365 (508)
137 KOG4211 Splicing factor hnRNP- 58.4 15 0.00032 39.4 4.7 84 274-367 102-186 (510)
138 KOG4211 Splicing factor hnRNP- 55.7 24 0.00052 37.8 5.8 75 274-360 9-83 (510)
139 KOG0804 Cytoplasmic Zn-finger 55.6 34 0.00073 36.5 6.8 82 274-365 73-158 (493)
140 KOG4574 RNA-binding protein (c 55.3 8.7 0.00019 43.5 2.6 81 274-363 285-374 (1007)
141 KOG4019 Calcineurin-mediated s 49.1 17 0.00038 34.3 3.2 59 295-362 30-89 (193)
142 KOG4213 RNA-binding protein La 41.9 57 0.0012 31.0 5.3 52 291-346 120-171 (205)
143 PF03467 Smg4_UPF3: Smg-4/UPF3 41.6 52 0.0011 30.3 5.1 44 322-365 52-100 (176)
144 KOG1029 Endocytic adaptor prot 39.3 71 0.0015 36.4 6.4 10 327-336 642-651 (1118)
145 KOG0112 Large RNA-binding prot 37.7 28 0.00061 39.8 3.1 58 296-362 471-530 (975)
146 KOG0115 RNA-binding protein p5 34.8 37 0.00081 33.7 3.1 68 276-352 32-99 (275)
147 PF10567 Nab6_mRNP_bdg: RNA-re 31.0 80 0.0017 32.0 4.8 84 274-362 14-107 (309)
148 PRK08559 nusG transcription an 30.4 1.5E+02 0.0032 26.6 6.0 47 292-347 20-68 (153)
149 PF03880 DbpA: DbpA RNA bindin 30.2 1E+02 0.0023 24.0 4.5 56 292-359 17-73 (74)
150 KOG0128 RNA-binding protein SA 30.1 21 0.00045 40.5 0.6 65 294-362 750-814 (881)
151 KOG2135 Proteins containing th 29.4 38 0.00083 36.3 2.4 59 294-362 387-445 (526)
152 KOG0112 Large RNA-binding prot 28.8 14 0.0003 42.1 -1.0 78 274-360 371-448 (975)
153 PF14268 YoaP: YoaP-like 28.5 40 0.00087 24.7 1.7 39 329-367 4-44 (44)
154 KOG0128 RNA-binding protein SA 27.8 11 0.00024 42.6 -2.0 58 295-357 682-741 (881)
155 PF10309 DUF2414: Protein of u 26.2 1.8E+02 0.0039 22.7 5.0 41 294-345 18-62 (62)
156 KOG4307 RNA binding protein RB 25.4 68 0.0015 36.1 3.4 86 270-364 429-515 (944)
157 COG4274 Uncharacterized conser 24.8 1.9E+02 0.0042 24.9 5.3 87 272-366 6-97 (104)
158 COG0050 TufB GTPases - transla 23.2 63 0.0014 33.2 2.5 32 276-307 130-164 (394)
159 PF08675 RNA_bind: RNA binding 23.0 1.9E+02 0.004 24.3 4.8 43 294-347 22-64 (87)
160 PF03439 Spt5-NGN: Early trans 20.1 1.3E+02 0.0029 24.2 3.4 35 306-348 33-67 (84)
No 1
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=3.9e-72 Score=537.20 Aligned_cols=354 Identities=42% Similarity=0.640 Sum_probs=296.8
Q ss_pred CCCCCCCCCCCCCCCCCCcccccccCccccCCCccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCC---CCCCCC
Q 016857 3 GGLYGDLPPPSDEDKPTNTTTTVWSSSAKMAPPTLRKPSSIFAPPQTILKPQSKPKTTQNSLPTRPHSSPA---IAPSPD 79 (381)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 79 (381)
++||+|||+++++.|+.. + +||+.+||+|+||+++-+ |++++.++|...+|.|....+.....++.+ +...+-
T Consensus 1 ~~lydDlp~~t~d~K~~g--~-~ws~~~k~~qsqL~~~kA-al~qq~~~r~l~kp~pvi~~~~k~~~~s~~~qs~~~pp~ 76 (378)
T KOG1996|consen 1 NDLYDDLPQGTPDAKQAG--P-MWSIQMKFMQSQLAQRKA-ALQQQAARRKLVKPPPVIDLSTKNRTISTAVQSVSFPPI 76 (378)
T ss_pred CCccccCCCCCccccccC--c-cchhhhhhcchhhccCcc-ccChHHHhccccCCCCceecccCCCCCCccccccccCcc
Confidence 689999999999988777 4 899999999999999999 999999999999998877666666665533 333344
Q ss_pred CCcCCCCCceecccc-----ccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh------h
Q 016857 80 DAAALPQPALVGVTS-----TVIEEYDPARPNDYEDYRREKKKKAVDAEIRRELERRRQEGEERERREREERE------N 148 (381)
Q Consensus 80 ~~~~~~~p~~~~~~~-----~~~deYDP~rPn~ye~y~~~~~~~~~~~e~~~~l~r~r~~~~e~er~r~~~~~------r 148 (381)
.+.+.++|+++++.. +|.||||||+|||||++.+. ++.+++.++++.|++++.+|||.++....+ .
T Consensus 77 ~aap~~dpi~~g~~a~~~~~~v~~EYdPm~PNdye~v~Kr---~~~er~~~re~~r~~~e~eeRekreke~~e~s~~~~~ 153 (378)
T KOG1996|consen 77 RAAPVSDPISFGPKAATDEEHVKCEYDPMFPNDYEKVVKR---QRDERKQRRETAREVAEIEEREKREKERHEASKGAAI 153 (378)
T ss_pred cccCccCcccccccccccccchhhhcCCCCcchHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 555557999999999 99999999999999988764 456677888888888777666644321111 2
Q ss_pred hccCCCCCChHHHHHHHHhhcCCCCCCCC-CCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCChhhHHHHHHHHcCCCCC
Q 016857 149 ASASRLNMSGEEAWKRRAAMSSGGVPPRS-PSPPPVNVESGGGGGGFTIGKSETSGLGLGAGGQMTAAQRMMAKMGWKEG 227 (381)
Q Consensus 149 ~~~~~~~~sgd~a~~RR~a~s~~~~~~~s-psppp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kmm~KmGwk~G 227 (381)
.+|..+.+++.|+|+|+.+|++.+...++ .++||. ..++.+|+.|++.++|.+..++.+++++||+||||++|
T Consensus 154 sdP~~l~~~~~E~~kr~~~m~g~~~g~~~~~~spP~------~~~~~ai~rs~tn~fg~~~gg~ltvA~~im~k~G~keG 227 (378)
T KOG1996|consen 154 SDPTMLMEPEPEVIKRTNEMQGEKSGFHSSEMSPPS------FLPSAAIPRSPTNSFGANTGGGLTVAHKIMQKYGFKEG 227 (378)
T ss_pred CCchhccccchHHHhhhhhccCCCCCCCcccCCCcc------cCcccccccCccchhhhhcccchhHHHHHHHHhCcccc
Confidence 23777899999999999999887653322 233332 22346899999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccccccCcce-eeecCCccc---chh-cccc-ccCCCCCceEEEEecccCCCCChhhHHHHHHHHH
Q 016857 228 QGLGRQEQGITTPLMARKTDRRAG-VIVNASENK---SEK-KVKS-VNFNGPPTRVLLLRNMVGPGEVDDELEDEVGSEC 301 (381)
Q Consensus 228 ~GLG~~~qGI~~Pi~~~~~~~~~G-lg~~~~~~~---~~~-~~~~-~~~~g~pSrVVvL~NMv~~~El~dELeeDI~EEC 301 (381)
+||||++|||..+|.++++..++| +++.+++.+ ..+ .+++ +.+.+.+++||+|+|||+++++++||++|+++||
T Consensus 228 qGLGKsEQGlsTalsveKT~~rgG~IIv~a~~~k~~~askk~v~n~t~Il~~ptkvlllrnmVg~gevd~elede~keEc 307 (378)
T KOG1996|consen 228 QGLGKSEQGLSTALSVEKTSKRGGKIIVGAATEKFADASKKSVSNLTEILKCPTKVLLLRNMVGAGEVDEELEDETKEEC 307 (378)
T ss_pred cCcCccccccccceeeeeccccCceeEecCcccccchhhhHhhhhHHHHHhcchHHHHhhhhcCcccccHHHHHHHHHHH
Confidence 999999999999999999999999 666665544 112 2333 6788999999999999999999999999999999
Q ss_pred hccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEecccccccccccC
Q 016857 302 AKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELA 371 (381)
Q Consensus 302 sKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~ee~F~~~~l~ 371 (381)
+|||+|.+|.|+.+ .+++.+..++|||+|+++++|.+|+..||||+|+||.|.|+||+.++|...+|+
T Consensus 308 eKyg~V~~viifei--p~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs~~ela 375 (378)
T KOG1996|consen 308 EKYGKVGNVIIFEI--PSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFSNLELA 375 (378)
T ss_pred HhhcceeeEEEEec--CCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhhhhhhhh
Confidence 99999999999987 457788999999999999999999999999999999999999999999999987
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.88 E-value=9.6e-23 Score=215.69 Aligned_cols=99 Identities=41% Similarity=0.682 Sum_probs=91.2
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCC-CCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEP-NFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~-~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
.+|+||||+|||+++|+++||++||++||+|||.|++|.|+..... +..++..|+|||+|.+.++|.+|++.||||||+
T Consensus 512 ~~S~vVvL~NMv~~~eldedl~eDV~eEC~K~G~V~~v~I~~~~~~~~~~~~~~g~VfV~F~~~~~A~~A~~~LnGR~F~ 591 (612)
T TIGR01645 512 NRSNVIVLRNMVTPQDIDEFLEGEIREECGKFGVVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEVDRAKAALDGRFFG 591 (612)
T ss_pred CCCCEEEEeCCCChHHhHHHHHHHHHHHhhcCceeEEEEEecCCCCccccccceEEEEEEECCHHHHHHHHHHhcCCeEC
Confidence 4799999999999999999999999999999999999999985442 333456899999999999999999999999999
Q ss_pred CeEEEEEecccccccccccC
Q 016857 352 GRVVRATFYDEERFSKNELA 371 (381)
Q Consensus 352 GR~V~a~fy~ee~F~~~~l~ 371 (381)
||.|.|+||++++|++++|.
T Consensus 592 GR~V~a~~yd~~~f~~~~l~ 611 (612)
T TIGR01645 592 GRTVVAEAYDQILFDHADLS 611 (612)
T ss_pred CeEEEEEEcCHHHhhccccC
Confidence 99999999999999999985
No 3
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.2e-19 Score=177.98 Aligned_cols=100 Identities=43% Similarity=0.797 Sum_probs=89.8
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCC-CCCCCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPN-FPVDEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~-~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
...|+||+|+|||++.|+|++|+.||+|||+|||.|.+|.|+...... ...+-.++|||+|....++.+|...||||||
T Consensus 443 ~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfF 522 (544)
T KOG0124|consen 443 KQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFF 522 (544)
T ss_pred cccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhcccee
Confidence 357999999999999999999999999999999999999999753322 1234578999999999999999999999999
Q ss_pred CCeEEEEEecccccccccccC
Q 016857 351 GGRVVRATFYDEERFSKNELA 371 (381)
Q Consensus 351 ~GR~V~a~fy~ee~F~~~~l~ 371 (381)
+||.|.|+.||.+.|+.++|.
T Consensus 523 gGr~VvAE~YDQ~~FD~~Dls 543 (544)
T KOG0124|consen 523 GGRKVVAEVYDQERFDNSDLS 543 (544)
T ss_pred cCceeehhhhhhhcccccccC
Confidence 999999999999999999874
No 4
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.7e-19 Score=186.40 Aligned_cols=102 Identities=37% Similarity=0.674 Sum_probs=93.8
Q ss_pred cCCCCCceEEEEecccCCCCCh-----hhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHH
Q 016857 269 NFNGPPTRVLLLRNMVGPGEVD-----DELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALI 343 (381)
Q Consensus 269 ~~~g~pSrVVvL~NMv~~~El~-----dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~ 343 (381)
+..|.+++||||.|||+++||. .||.|||+.||+|||.|.+|.|+++.....+..+.|+|||+|.+.+++++|..
T Consensus 393 q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~ 472 (500)
T KOG0120|consen 393 QMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAME 472 (500)
T ss_pred ccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHH
Confidence 4568899999999999999885 36889999999999999999999985455667899999999999999999999
Q ss_pred hhCCCeeCCeEEEEEeccccccccccc
Q 016857 344 DLDGRFFGGRVVRATFYDEERFSKNEL 370 (381)
Q Consensus 344 ~LnGR~F~GR~V~a~fy~ee~F~~~~l 370 (381)
.|+||.|+||+|.+.||++++|+.++|
T Consensus 473 ~L~GrKF~nRtVvtsYydeDkY~~r~~ 499 (500)
T KOG0120|consen 473 ELTGRKFANRTVVASYYDEDKYHAREF 499 (500)
T ss_pred HccCceeCCcEEEEEecCHHHhhcccc
Confidence 999999999999999999999999886
No 5
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.73 E-value=1.3e-17 Score=171.17 Aligned_cols=101 Identities=27% Similarity=0.519 Sum_probs=88.4
Q ss_pred CCCCCceEEEEecccCCCCCh-----hhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHh
Q 016857 270 FNGPPTRVLLLRNMVGPGEVD-----DELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALID 344 (381)
Q Consensus 270 ~~g~pSrVVvL~NMv~~~El~-----dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~ 344 (381)
+.+.+++||+|.||+..++|. +++.+||+++|++||.|++|.|+++.....+..+.|+|||+|.+.++|.+|+..
T Consensus 404 ~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ 483 (509)
T TIGR01642 404 IGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEG 483 (509)
T ss_pred ccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHH
Confidence 446799999999999987763 468899999999999999999997533322335679999999999999999999
Q ss_pred hCCCeeCCeEEEEEeccccccccccc
Q 016857 345 LDGRFFGGRVVRATFYDEERFSKNEL 370 (381)
Q Consensus 345 LnGR~F~GR~V~a~fy~ee~F~~~~l 370 (381)
||||+|+||.|.+.||+++.|.+++|
T Consensus 484 lnGr~~~gr~v~~~~~~~~~~~~~~~ 509 (509)
T TIGR01642 484 MNGRKFNDRVVVAAFYGEDCYKAGDY 509 (509)
T ss_pred cCCCEECCeEEEEEEeCHHHhhccCC
Confidence 99999999999999999999998875
No 6
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.68 E-value=3.2e-17 Score=168.94 Aligned_cols=88 Identities=33% Similarity=0.590 Sum_probs=80.9
Q ss_pred CCceEEEEecccCCCC-----ChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCC
Q 016857 273 PPTRVLLLRNMVGPGE-----VDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDG 347 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~E-----l~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnG 347 (381)
.+|.|++|.|||++.+ ++.||+|||.|||+|||.|..|+|..+ +.|+|||+|.+.+.|..|+++|||
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n--------s~g~VYvrc~s~~~A~~a~~alhg 512 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN--------SAGCVYVRCPSAEAAGTAVKALHG 512 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC--------CCceEEEecCcHHHHHHHHHHHhh
Confidence 6899999999999965 457999999999999999999999764 349999999999999999999999
Q ss_pred CeeCCeEEEEEeccccccccc
Q 016857 348 RFFGGRVVRATFYDEERFSKN 368 (381)
Q Consensus 348 R~F~GR~V~a~fy~ee~F~~~ 368 (381)
|||+||.|+|.|++.+.|...
T Consensus 513 rWF~gr~Ita~~~~~~~Y~~~ 533 (549)
T KOG0147|consen 513 RWFAGRMITAKYLPLERYHSK 533 (549)
T ss_pred hhhccceeEEEEeehhhhhhh
Confidence 999999999999999998754
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.66 E-value=3e-16 Score=159.32 Aligned_cols=90 Identities=31% Similarity=0.631 Sum_probs=80.8
Q ss_pred CCCceEEEEecccCCCCC-----hhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC
Q 016857 272 GPPTRVLLLRNMVGPGEV-----DDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD 346 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El-----~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln 346 (381)
..+++||+|.||+++.+. +.||.+||++||+|||.|+.|.|+.. ...|+|||+|.+.++|.+|++.||
T Consensus 359 ~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~-------~~~G~~fV~F~~~e~A~~A~~~ln 431 (457)
T TIGR01622 359 NLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK-------NSAGKIYLKFSSVDAALAAFQALN 431 (457)
T ss_pred CCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC-------CCceeEEEEECCHHHHHHHHHHhc
Confidence 468999999999998654 35789999999999999999999753 245999999999999999999999
Q ss_pred CCeeCCeEEEEEeccccccccc
Q 016857 347 GRFFGGRVVRATFYDEERFSKN 368 (381)
Q Consensus 347 GR~F~GR~V~a~fy~ee~F~~~ 368 (381)
||+|+||.|.|.|++++.|...
T Consensus 432 Gr~f~gr~i~~~~~~~~~~~~~ 453 (457)
T TIGR01622 432 GRYFGGKMITAAFVVNDVYDMS 453 (457)
T ss_pred CcccCCeEEEEEEEcHHHHHhh
Confidence 9999999999999999999754
No 8
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.55 E-value=7.7e-15 Score=144.92 Aligned_cols=89 Identities=27% Similarity=0.678 Sum_probs=78.3
Q ss_pred CCceEEEEecccCCCCCh------hhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC
Q 016857 273 PPTRVLLLRNMVGPGEVD------DELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD 346 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~------dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln 346 (381)
...++|+|+|||++.+++ .||++||++||.|||.|.+|.|+..++ .|.|-|.|.+.++|..||+.|+
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hP-------dGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHP-------DGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCC-------CceeEEEeCChHHHHHHHHHhc
Confidence 457899999999998765 478999999999999999999996543 4889999999999999999999
Q ss_pred CCeeCCeEEEEEeccc-cccccc
Q 016857 347 GRFFGGRVVRATFYDE-ERFSKN 368 (381)
Q Consensus 347 GR~F~GR~V~a~fy~e-e~F~~~ 368 (381)
||||+||+|.|+.|+. .+|...
T Consensus 336 GR~fdgRql~A~i~DG~t~~~~e 358 (382)
T KOG1548|consen 336 GRWFDGRQLTASIWDGKTKFQTE 358 (382)
T ss_pred CeeecceEEEEEEeCCcceeeee
Confidence 9999999999999986 455543
No 9
>smart00361 RRM_1 RNA recognition motif.
Probab=99.41 E-value=1.1e-12 Score=102.04 Aligned_cols=67 Identities=31% Similarity=0.646 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHhccCCeeEEE-EeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEE
Q 016857 291 DELEDEVGSECAKYGTVTRVL-IFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRAT 358 (381)
Q Consensus 291 dELeeDI~EECsKYG~V~~V~-I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~ 358 (381)
++|.+.+.+||++||.|.+|. |..+... ......|++||+|.+.++|.+|++.|||++|+||.|.|+
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~-~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVG-YENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCC-CCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678999999999999999996 5443322 113568999999999999999999999999999999873
No 10
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function. This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular
Probab=99.30 E-value=1.3e-12 Score=94.83 Aligned_cols=43 Identities=42% Similarity=0.802 Sum_probs=41.2
Q ss_pred hhHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCcceeee
Q 016857 212 MTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIV 254 (381)
Q Consensus 212 ~~~~~kmm~KmGwk~G~GLG~~~qGI~~Pi~~~~~~~~~Glg~ 254 (381)
++||.+||+||||++|+|||++++||++||.++.+.++.|||+
T Consensus 2 ~~~g~~lm~kmGw~~G~GLGk~~~G~~~pi~~~~~~~~~GlG~ 44 (45)
T PF01585_consen 2 SSIGFKLMKKMGWKPGQGLGKNGQGIAEPIEVKKKKDRKGLGA 44 (45)
T ss_pred CcHHHHHHHHCCCCCCcCCCcCCccCCcceEEeeEcCCccccC
Confidence 5899999999999999999999999999999999999999886
No 11
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=99.20 E-value=2.7e-12 Score=122.86 Aligned_cols=93 Identities=26% Similarity=0.425 Sum_probs=80.1
Q ss_pred CCCceEEEEecccCCCCC--------------------hhhHHHHHHHHHh-ccCCeeEEEEeeeCCCCCCCCCceEEEE
Q 016857 272 GPPTRVLLLRNMVGPGEV--------------------DDELEDEVGSECA-KYGTVTRVLIFEITEPNFPVDEAVRIFV 330 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El--------------------~dELeeDI~EECs-KYG~V~~V~I~~~~~~~~~~~~~GrVFV 330 (381)
...|.+|+|.||....+. .||+.|||..|++ |||.|+++.|..+.. ++..|.|||
T Consensus 40 pt~s~t~ll~nmyq~P~~~~~~~d~~~~~~~de~~q~~~defyEd~f~E~~~kygEiee~~Vc~Nl~----~hl~GNVYV 115 (260)
T KOG2202|consen 40 PTFSQTVLLKNMYQNPENSWERRDAQGQFLTDEELQRHEDEFYEDVFTELEDKYGEIEELNVCDNLG----DHLVGNVYV 115 (260)
T ss_pred cccchHHHHHHHHhCCCCCchhhhhccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccc----hhhhhhhhh
Confidence 457899999999753211 1467899999999 999999999886543 467899999
Q ss_pred EeCCHHHHHHHHHhhCCCeeCCeEEEEEeccccccccc
Q 016857 331 QFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKN 368 (381)
Q Consensus 331 eF~d~esA~kAv~~LnGR~F~GR~V~a~fy~ee~F~~~ 368 (381)
+|...++|++|+..||||||+|+.|+|.|.++..|...
T Consensus 116 ~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~rea 153 (260)
T KOG2202|consen 116 KFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFREA 153 (260)
T ss_pred hcccHHHHHHHHHHHcCccccCCcceeeecCcCchhhh
Confidence 99999999999999999999999999999999998765
No 12
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.15 E-value=1.7e-10 Score=85.26 Aligned_cols=56 Identities=30% Similarity=0.537 Sum_probs=49.8
Q ss_pred HHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEec
Q 016857 297 VGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFY 360 (381)
Q Consensus 297 I~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy 360 (381)
|.+.|++||.|++|.+.... .+.+||+|.+.++|.+|+..|||+.|+|+.|++.|.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 56889999999999997532 488999999999999999999999999999999873
No 13
>smart00443 G_patch glycine rich nucleic binding domain. A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.
Probab=99.10 E-value=5.8e-11 Score=86.41 Aligned_cols=44 Identities=43% Similarity=0.795 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCcceeee
Q 016857 211 QMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIV 254 (381)
Q Consensus 211 ~~~~~~kmm~KmGwk~G~GLG~~~qGI~~Pi~~~~~~~~~Glg~ 254 (381)
..+||++||.+|||++|+|||+++|||++||++..+.++.|||.
T Consensus 3 ~~~~g~~~l~~mGw~~G~GLG~~~~g~~~pi~~~~~~~~~GlG~ 46 (47)
T smart00443 3 TSNIGYKLLRKMGWKEGQGLGKNEQGIVEPISAEIKKDRKGLGA 46 (47)
T ss_pred cccHHHHHHHHcCCCCCCcCCCCCCcCccceeEeeccCCcCcCC
Confidence 35899999999999999999999999999999999999999875
No 14
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.03 E-value=1.8e-09 Score=105.91 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=69.7
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..+++|++.||-.. + -+++|++.|++||.|++|.|+.+...+ ..+|++||+|.+.++|.+|+..|||..|+|
T Consensus 267 ~~~~~lfV~NL~~~--~---~e~~L~~~F~~fG~v~~v~i~~d~~t~---~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g 338 (352)
T TIGR01661 267 GAGYCIFVYNLSPD--T---DETVLWQLFGPFGAVQNVKIIRDLTTN---QCKGYGFVSMTNYDEAAMAILSLNGYTLGN 338 (352)
T ss_pred CCCcEEEEeCCCCC--C---CHHHHHHHHHhCCCeEEEEEeEcCCCC---CccceEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35668999998532 2 256788999999999999999865433 568999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
|.|++.|...
T Consensus 339 r~i~V~~~~~ 348 (352)
T TIGR01661 339 RVLQVSFKTN 348 (352)
T ss_pred eEEEEEEccC
Confidence 9999999864
No 15
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.93 E-value=1.1e-08 Score=90.81 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=69.8
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..++.|++.|+-..- -++||++.|++||.|.+|.|+.+...+ ...|++||+|++.++|.+|++.|||..++|
T Consensus 32 ~~~~~lfVgnL~~~~-----te~~L~~~F~~~G~I~~v~i~~d~~tg---~~kGfaFV~F~~~e~A~~Al~~lng~~i~G 103 (144)
T PLN03134 32 LMSTKLFIGGLSWGT-----DDASLRDAFAHFGDVVDAKVIVDRETG---RSRGFGFVNFNDEGAATAAISEMDGKELNG 103 (144)
T ss_pred CCCCEEEEeCCCCCC-----CHHHHHHHHhcCCCeEEEEEEecCCCC---CcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 457789999976332 267889999999999999998765432 568999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|++.+...
T Consensus 104 r~l~V~~a~~ 113 (144)
T PLN03134 104 RHIRVNPAND 113 (144)
T ss_pred EEEEEEeCCc
Confidence 9999998754
No 16
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=1.1e-08 Score=93.95 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=61.6
Q ss_pred EEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEE
Q 016857 277 VLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVR 356 (381)
Q Consensus 277 VVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~ 356 (381)
-|++-||-+.. -+.||..+|.+||.|.+|||..+.. |++||+|++..+|.+|+..|||+.|+|..|.
T Consensus 12 kVYVGnL~~~a-----~k~eLE~~F~~yG~lrsvWvArnPP--------GfAFVEFed~RDA~DAvr~LDG~~~cG~r~r 78 (195)
T KOG0107|consen 12 KVYVGNLGSRA-----TKRELERAFSKYGPLRSVWVARNPP--------GFAFVEFEDPRDAEDAVRYLDGKDICGSRIR 78 (195)
T ss_pred eEEeccCCCCc-----chHHHHHHHHhcCcceeEEEeecCC--------CceEEeccCcccHHHHHhhcCCccccCceEE
Confidence 45666764332 2457778999999999999998543 8999999999999999999999999999999
Q ss_pred EEeccc
Q 016857 357 ATFYDE 362 (381)
Q Consensus 357 a~fy~e 362 (381)
|++...
T Consensus 79 VE~S~G 84 (195)
T KOG0107|consen 79 VELSTG 84 (195)
T ss_pred EEeecC
Confidence 999865
No 17
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.77 E-value=9.1e-08 Score=71.62 Aligned_cols=59 Identities=27% Similarity=0.499 Sum_probs=52.6
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEE
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVR 356 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~ 356 (381)
++||++.+++||.|..+.|..+.. ....+.+||+|.+.++|.+|+..|||..|+|+.|+
T Consensus 12 ~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 12 EEELRDFFSQFGKIESIKVMRNSS----GKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp HHHHHHHHHTTSTEEEEEEEEETT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred HHHHHHHHHHhhhccccccccccc----ccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 578889999999999999998621 25689999999999999999999999999999985
No 18
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.71 E-value=8.3e-08 Score=94.14 Aligned_cols=79 Identities=16% Similarity=0.303 Sum_probs=66.6
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
+..|++.|| +.++. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..+.|+.
T Consensus 3 ~~~l~V~nL--p~~~~---e~~l~~~F~~~G~i~~v~i~~d~~~g---~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~ 74 (352)
T TIGR01661 3 KTNLIVNYL--PQTMT---QEEIRSLFTSIGEIESCKLVRDKVTG---QSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKT 74 (352)
T ss_pred CcEEEEeCC--CCCCC---HHHHHHHHHccCCEEEEEEEEcCCCC---ccceEEEEEECcHHHHHHHHhhcccEEECCee
Confidence 457888887 33333 46888999999999999999865432 46799999999999999999999999999999
Q ss_pred EEEEecc
Q 016857 355 VRATFYD 361 (381)
Q Consensus 355 V~a~fy~ 361 (381)
|.+.|..
T Consensus 75 i~v~~a~ 81 (352)
T TIGR01661 75 IKVSYAR 81 (352)
T ss_pred EEEEeec
Confidence 9998874
No 19
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.67 E-value=1.7e-07 Score=71.29 Aligned_cols=70 Identities=23% Similarity=0.429 Sum_probs=57.2
Q ss_pred EEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEE
Q 016857 278 LLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVR 356 (381)
Q Consensus 278 VvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~ 356 (381)
|+|.|+-.. + -.+||++.|+.||.|.+|.+..... + ...+.+||+|.+.++|.+|+..++|.+|+||.|.
T Consensus 1 v~i~nlp~~--~---~~~~l~~~f~~~g~v~~v~~~~~~~-~---~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPS--T---TEEDLRNFFSRFGPVEKVRLIKNKD-G---QSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT-------HHHHHHHCTTSSBEEEEEEEESTT-S---SEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCC--C---CHHHHHHHHHhcCCcceEEEEeeec-c---ccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 456665432 1 1368999999999999999998643 2 5689999999999999999999999999999984
No 20
>KOG2809 consensus Telomerase elongation inhibitor/RNA maturation protein PINX1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=1.4e-08 Score=100.88 Aligned_cols=51 Identities=31% Similarity=0.644 Sum_probs=46.2
Q ss_pred CCCChhhHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCcceeeecCC
Q 016857 207 GAGGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNAS 257 (381)
Q Consensus 207 ~~~~~~~~~~kmm~KmGwk~G~GLG~~~qGI~~Pi~~~~~~~~~Glg~~~~ 257 (381)
|....+.||++||.||||++|.|||++.|||+.||.|....+..|||++..
T Consensus 21 w~nd~~~fg~KlLekmGW~eG~GLG~~~qG~~~~IKvs~K~d~~GLGa~~~ 71 (326)
T KOG2809|consen 21 WSNDDSRFGKKLLEKMGWSEGDGLGKNEQGITDPIKVSLKNDTLGLGADKN 71 (326)
T ss_pred hcccchHHHHHHHHHcCCccCCcccccccCCccceEEEeccCCcccCcccc
Confidence 334556999999999999999999999999999999999999999999654
No 21
>smart00360 RRM RNA recognition motif.
Probab=98.64 E-value=1.8e-07 Score=68.07 Aligned_cols=61 Identities=28% Similarity=0.447 Sum_probs=53.1
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEE
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRA 357 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a 357 (381)
.+||++.|++||.|..|.|...... ....|.+||+|.+.++|.+|+..|+|..|+|+.|.+
T Consensus 10 ~~~l~~~f~~~g~v~~~~i~~~~~~---~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 10 EEELRELFSKFGKIESVRLVRDKDT---GKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred HHHHHHHHHhhCCEeEEEEEeCCCC---CCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 4688899999999999999875431 245789999999999999999999999999999876
No 22
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=1.9e-07 Score=79.67 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=72.1
Q ss_pred CCCCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCe
Q 016857 270 FNGPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRF 349 (381)
Q Consensus 270 ~~g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~ 349 (381)
+...-+++|.++|+--. + -.||+-+.|+|||.|.+|.|-.. ..-+|.+||.|++..+|.+|+..|+|-.
T Consensus 13 lppevnriLyirNLp~~--I---TseemydlFGkyg~IrQIRiG~~------k~TrGTAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFK--I---TSEEMYDLFGKYGTIRQIRIGNT------KETRGTAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred CChhhheeEEEecCCcc--c---cHHHHHHHhhcccceEEEEecCc------cCcCceEEEEehHhhhHHHHHHHhcccc
Confidence 33456899999997421 1 24678889999999999999643 2457999999999999999999999999
Q ss_pred eCCeEEEEEeccc-ccccccc
Q 016857 350 FGGRVVRATFYDE-ERFSKNE 369 (381)
Q Consensus 350 F~GR~V~a~fy~e-e~F~~~~ 369 (381)
+++|-+.+.||.. +.|...+
T Consensus 82 ~~~ryl~vlyyq~~~~~~~~~ 102 (124)
T KOG0114|consen 82 VDNRYLVVLYYQPEDAFKLMD 102 (124)
T ss_pred cCCceEEEEecCHHHHHHHHH
Confidence 9999999999986 4555443
No 23
>KOG2184 consensus Tuftelin-interacting protein TIP39, contains G-patch domain [RNA processing and modification]
Probab=98.59 E-value=2.2e-08 Score=108.31 Aligned_cols=53 Identities=32% Similarity=0.548 Sum_probs=48.5
Q ss_pred CCCChhhHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCcceeeecCCcc
Q 016857 207 GAGGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNASEN 259 (381)
Q Consensus 207 ~~~~~~~~~~kmm~KmGwk~G~GLG~~~qGI~~Pi~~~~~~~~~Glg~~~~~~ 259 (381)
+..++.++|++||.||||++|+||||+.|||++||+++.+..++|+|+.+.+.
T Consensus 111 ~e~~t~gig~Kll~kMGYkpG~GLGkn~qGIv~Pieaq~Rp~rgg~Gay~~e~ 163 (767)
T KOG2184|consen 111 FEKGTKGIGAKLLEKMGYKPGKGLGKNAQGIVAPIEAQLRPGRGGLGAYGFET 163 (767)
T ss_pred hhhcccchhHHHHHHcCCccccccCccccccccHHhcccCccCcccccccccc
Confidence 34677899999999999999999999999999999999999999999987653
No 24
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.55 E-value=7.2e-08 Score=90.72 Aligned_cols=63 Identities=27% Similarity=0.362 Sum_probs=57.3
Q ss_pred HHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEec
Q 016857 295 DEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFY 360 (381)
Q Consensus 295 eDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy 360 (381)
+|++..|+|||.|..|+|+.+... .+..||+||.|.+..+|++|+..|+|++.+||.|.|.++
T Consensus 28 d~LrrvFekYG~vgDVyIPrdr~T---r~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 28 DDLRRVFEKYGRVGDVYIPRDRYT---RQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred HHHHHHHHHhCcccceeccccccc---ccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 577899999999999999987644 467999999999999999999999999999999988877
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.52 E-value=4.9e-07 Score=91.05 Aligned_cols=82 Identities=12% Similarity=0.192 Sum_probs=67.4
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
...+.|++.|+-.. + -++||++.|++||.|++|.|+.+...+ ..+|++||+|.+.++|.+|+..|||..+.+
T Consensus 105 ~~~~~LfVgnLp~~--~---te~~L~~lF~~~G~V~~v~i~~d~~tg---~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g 176 (346)
T TIGR01659 105 NSGTNLIVNYLPQD--M---TDRELYALFRTIGPINTCRIMRDYKTG---YSFGYAFVDFGSEADSQRAIKNLNGITVRN 176 (346)
T ss_pred CCCcEEEEeCCCCC--C---CHHHHHHHHHhcCCEEEEEEEecCCCC---ccCcEEEEEEccHHHHHHHHHHcCCCccCC
Confidence 35678888886422 2 256788999999999999998765432 467999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|++.|...
T Consensus 177 r~i~V~~a~p 186 (346)
T TIGR01659 177 KRLKVSYARP 186 (346)
T ss_pred ceeeeecccc
Confidence 9999988643
No 26
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.52 E-value=4.6e-07 Score=95.30 Aligned_cols=80 Identities=18% Similarity=0.305 Sum_probs=67.2
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.+..|++.|+-.. +. +++|++.|++||.|.+|.|+.+.. ....|++||+|.+.++|.+|+..|||++|+|+
T Consensus 284 ~~~~l~V~nl~~~--~~---~~~L~~~F~~~G~i~~~~i~~d~~----g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk 354 (562)
T TIGR01628 284 QGVNLYVKNLDDT--VT---DEKLRELFSECGEITSAKVMLDEK----GVSRGFGFVCFSNPEEANRAVTEMHGRMLGGK 354 (562)
T ss_pred CCCEEEEeCCCCc--cC---HHHHHHHHHhcCCeEEEEEEECCC----CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCc
Confidence 4556888886432 22 468899999999999999998632 24679999999999999999999999999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.+.+...
T Consensus 355 ~l~V~~a~~ 363 (562)
T TIGR01628 355 PLYVALAQR 363 (562)
T ss_pred eeEEEeccC
Confidence 999999875
No 27
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=98.49 E-value=3.9e-08 Score=99.61 Aligned_cols=51 Identities=31% Similarity=0.521 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCc
Q 016857 199 SETSGLGLGAGGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRR 249 (381)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~kmm~KmGwk~G~GLG~~~qGI~~Pi~~~~~~~~ 249 (381)
.....++.|..++.++|.|||+||||+.|+|||++++||++||.+++-..+
T Consensus 284 t~t~~fakWe~hTRGIgsKLM~kMGY~~G~GLG~~g~GiV~pI~a~vlp~g 334 (486)
T KOG2185|consen 284 TDTALFAKWENHTRGIGSKLMAKMGYREGMGLGVSGQGIVNPILAKVLPAG 334 (486)
T ss_pred ccHHHHhhhccccchHHHHHHHHhchhhccccCcCCCccccchhhhhccCC
Confidence 345677889999999999999999999999999999999999999876544
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=98.48 E-value=9.1e-07 Score=64.65 Aligned_cols=70 Identities=31% Similarity=0.469 Sum_probs=56.7
Q ss_pred EEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEE
Q 016857 278 LLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRA 357 (381)
Q Consensus 278 VvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a 357 (381)
|+|.|+- ..+ -.+||++.+.+||.|..+.+.... ....+.+||+|.+.++|.+|+..|+|..|+|+.|.+
T Consensus 2 v~i~~l~--~~~---~~~~l~~~~~~~g~v~~~~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 2 LFVGNLP--PDV---TEEDLKELFSKFGPIESVKIPKDT-----GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred EEEcCCC--CcC---CHHHHHHHHHhcCCEEEEEEecCC-----CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 5666762 222 246788889999999999988653 235689999999999999999999999999999876
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.45 E-value=1.6e-06 Score=90.21 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=66.7
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..++.+|++.|+-. ..+. +++|++.|++||.|.+|.|+... .|++||+|.+.++|.+|+..|||..|.
T Consensus 272 ~~~~~~l~v~nL~~-~~vt---~~~L~~lF~~yG~V~~vki~~~~--------~g~afV~f~~~~~A~~Ai~~lng~~l~ 339 (481)
T TIGR01649 272 GGPGSVLMVSGLHQ-EKVN---CDRLFNLFCVYGNVERVKFMKNK--------KETALIEMADPYQAQLALTHLNGVKLF 339 (481)
T ss_pred CCCCCEEEEeCCCC-CCCC---HHHHHHHHHhcCCeEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45789999999742 1222 46888999999999999998642 489999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 340 g~~l~v~~s~~ 350 (481)
T TIGR01649 340 GKPLRVCPSKQ 350 (481)
T ss_pred CceEEEEEccc
Confidence 99999998744
No 30
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.44 E-value=1.7e-06 Score=63.53 Aligned_cols=62 Identities=34% Similarity=0.543 Sum_probs=54.0
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEe
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATF 359 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~f 359 (381)
.+||++.|+.||.|.++.+...... ...+.+||+|.+.++|..|++.++|..|+|+.|.+.+
T Consensus 13 ~~~i~~~~~~~g~i~~~~~~~~~~~----~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 13 EEDLRELFSKFGKVESVRIVRDKDT----KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred HHHHHHHHHhcCCEEEEEEeeCCCC----CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4688899999999999999864332 3468999999999999999999999999999998864
No 31
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.44 E-value=1.3e-06 Score=84.87 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=64.1
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
.+.|++.|+=..- -++||++.|+.||.|++|.|..+.. ..|++||+|.+.++|..|+. |||..|+||.
T Consensus 4 ~rtVfVgNLs~~t-----TE~dLrefFS~~G~I~~V~I~~d~~------~~GfAFVtF~d~eaAe~All-LnG~~l~gr~ 71 (260)
T PLN03120 4 VRTVKVSNVSLKA-----TERDIKEFFSFSGDIEYVEMQSENE------RSQIAYVTFKDPQGAETALL-LSGATIVDQS 71 (260)
T ss_pred CCEEEEeCCCCCC-----CHHHHHHHHHhcCCeEEEEEeecCC------CCCEEEEEeCcHHHHHHHHH-hcCCeeCCce
Confidence 5788898965322 2578899999999999999987542 35899999999999999995 9999999999
Q ss_pred EEEEeccc
Q 016857 355 VRATFYDE 362 (381)
Q Consensus 355 V~a~fy~e 362 (381)
|.+.....
T Consensus 72 V~Vt~a~~ 79 (260)
T PLN03120 72 VTITPAED 79 (260)
T ss_pred EEEEeccC
Confidence 99999764
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.43 E-value=1.4e-06 Score=88.86 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=67.7
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.+++|+|.|+-.. +. ++||++.|++||.|..|.|..+...+ ...|++||+|.+.++|.+|+..|||..++|+
T Consensus 185 ~~~~l~v~nl~~~--~t---e~~l~~~f~~~G~i~~v~~~~d~~~g---~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~ 256 (457)
T TIGR01622 185 NFLKLYVGNLHFN--IT---EQELRQIFEPFGDIEDVQLHRDPETG---RSKGFGFIQFHDAEEAKEALEVMNGFELAGR 256 (457)
T ss_pred CCCEEEEcCCCCC--CC---HHHHHHHHHhcCCeEEEEEEEcCCCC---ccceEEEEEECCHHHHHHHHHhcCCcEECCE
Confidence 4788999997532 22 46788999999999999998765432 4679999999999999999999999999999
Q ss_pred EEEEEecc
Q 016857 354 VVRATFYD 361 (381)
Q Consensus 354 ~V~a~fy~ 361 (381)
.|.+.|..
T Consensus 257 ~i~v~~a~ 264 (457)
T TIGR01622 257 PIKVGYAQ 264 (457)
T ss_pred EEEEEEcc
Confidence 99999965
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.42 E-value=1.2e-06 Score=91.33 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=64.0
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhh--CCCeeC
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDL--DGRFFG 351 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~L--nGR~F~ 351 (381)
||+||.|.|+-..- -++||++.|++||.|.+|.|.. .++.+||+|.+.++|.+|++.| |+..++
T Consensus 1 ps~vv~V~nLp~~~-----te~~L~~~f~~fG~V~~v~i~~---------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~ 66 (481)
T TIGR01649 1 PSPVVHVRNLPQDV-----VEADLVEALIPFGPVSYVMMLP---------GKRQALVEFEDEESAKACVNFATSVPIYIR 66 (481)
T ss_pred CccEEEEcCCCCCC-----CHHHHHHHHHhcCCeeEEEEEC---------CCCEEEEEeCchHHHHHHHHHhhcCCceEc
Confidence 69999999975322 2567889999999999999974 2478999999999999999974 789999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 67 g~~l~v~~s~~ 77 (481)
T TIGR01649 67 GQPAFFNYSTS 77 (481)
T ss_pred CeEEEEEecCC
Confidence 99999999854
No 34
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.40 E-value=1.7e-06 Score=87.10 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=64.8
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC--
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG-- 352 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G-- 352 (381)
+..|+|.|+- .++. ++||++.|++||.|++|.|+.+...+ ..+|++||+|.+.++|.+|+..|||..|.|
T Consensus 193 ~~~lfV~nLp--~~vt---ee~L~~~F~~fG~V~~v~i~~d~~tg---~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~ 264 (346)
T TIGR01659 193 DTNLYVTNLP--RTIT---DDQLDTIFGKYGQIVQKNILRDKLTG---TPRGVAFVRFNKREEAQEAISALNNVIPEGGS 264 (346)
T ss_pred cceeEEeCCC--Cccc---HHHHHHHHHhcCCEEEEEEeecCCCC---ccceEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 3457777763 2222 46888999999999999998765433 457999999999999999999999999977
Q ss_pred eEEEEEecccc
Q 016857 353 RVVRATFYDEE 363 (381)
Q Consensus 353 R~V~a~fy~ee 363 (381)
+.|++.+..+.
T Consensus 265 ~~l~V~~a~~~ 275 (346)
T TIGR01659 265 QPLTVRLAEEH 275 (346)
T ss_pred eeEEEEECCcc
Confidence 68999988763
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.39 E-value=1.3e-06 Score=93.28 Aligned_cols=73 Identities=26% Similarity=0.469 Sum_probs=62.7
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhcc--CCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKY--GTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKY--G~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
.+++|+|.|+-. ++. +++|+++|++| |.|++|.+.+ +++||+|++.++|.+|+..|||..|+
T Consensus 232 ~~k~LfVgNL~~--~~t---ee~L~~~F~~f~~G~I~rV~~~r-----------gfAFVeF~s~e~A~kAi~~lnG~~i~ 295 (578)
T TIGR01648 232 KVKILYVRNLMT--TTT---EEIIEKSFSEFKPGKVERVKKIR-----------DYAFVHFEDREDAVKAMDELNGKELE 295 (578)
T ss_pred cccEEEEeCCCC--CCC---HHHHHHHHHhcCCCceEEEEeec-----------CeEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 467899999743 222 56788999999 9999998763 58999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|++.|...
T Consensus 296 Gr~I~V~~Akp 306 (578)
T TIGR01648 296 GSEIEVTLAKP 306 (578)
T ss_pred CEEEEEEEccC
Confidence 99999999854
No 36
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=2e-06 Score=82.69 Aligned_cols=79 Identities=22% Similarity=0.338 Sum_probs=66.4
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
+..|.|.|+-... -++|++|.+.+||.|.+|+|.++...+ ..+|++||.|.+.++|.+|+..|||.-|+.-+
T Consensus 189 ~~tvRvtNLsed~-----~E~dL~eLf~~fg~i~rvylardK~TG---~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LI 260 (270)
T KOG0122|consen 189 EATVRVTNLSEDM-----REDDLEELFRPFGPITRVYLARDKETG---LSKGFAFVTFESRDDAARAIADLNGYGYDNLI 260 (270)
T ss_pred cceeEEecCcccc-----ChhHHHHHhhccCccceeEEEEccccC---cccceEEEEEecHHHHHHHHHHccCcccceEE
Confidence 4568888864221 245667888999999999999987665 57899999999999999999999999999999
Q ss_pred EEEEecc
Q 016857 355 VRATFYD 361 (381)
Q Consensus 355 V~a~fy~ 361 (381)
+.|++..
T Consensus 261 LrvEwsk 267 (270)
T KOG0122|consen 261 LRVEWSK 267 (270)
T ss_pred EEEEecC
Confidence 9999864
No 37
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=98.31 E-value=6.3e-07 Score=94.00 Aligned_cols=47 Identities=43% Similarity=0.700 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCcceeeecCC
Q 016857 211 QMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNAS 257 (381)
Q Consensus 211 ~~~~~~kmm~KmGwk~G~GLG~~~qGI~~Pi~~~~~~~~~Glg~~~~ 257 (381)
..+++++||+||||+.|+||||++||+.+||.+..+.++.|+|.+..
T Consensus 82 y~~va~~lMakMG~~~geGLGK~~QGr~epi~as~Q~GRrGlGl~l~ 128 (845)
T KOG3673|consen 82 YLTVAERLMAKMGHKAGEGLGKHGQGRSEPIAASTQRGRRGLGLNLK 128 (845)
T ss_pred cchHHHHHHHHhCccccccccccCCCccchhhhhhhccccccCccch
Confidence 56899999999999999999999999999999999999999999763
No 38
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.30 E-value=4.8e-06 Score=86.00 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=66.2
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
..+.|+|.|+-. .+. +++|++.|++||.|..|.|......+ ...|++||+|.+.++|.+|+..|||..|+|+
T Consensus 294 ~~~~l~v~nlp~--~~~---~~~l~~~f~~~G~i~~~~~~~~~~~g---~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~ 365 (509)
T TIGR01642 294 SKDRIYIGNLPL--YLG---EDQIKELLESFGDLKAFNLIKDIATG---LSKGYAFCEYKDPSVTDVAIAALNGKDTGDN 365 (509)
T ss_pred CCCEEEEeCCCC--CCC---HHHHHHHHHhcCCeeEEEEEecCCCC---CcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 356788888742 232 46788999999999999998754332 4679999999999999999999999999999
Q ss_pred EEEEEecc
Q 016857 354 VVRATFYD 361 (381)
Q Consensus 354 ~V~a~fy~ 361 (381)
.|.+.+..
T Consensus 366 ~l~v~~a~ 373 (509)
T TIGR01642 366 KLHVQRAC 373 (509)
T ss_pred EEEEEECc
Confidence 99999874
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.3e-06 Score=84.94 Aligned_cols=74 Identities=19% Similarity=0.441 Sum_probs=64.2
Q ss_pred CCCChhhHH-HHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEeccc
Q 016857 286 PGEVDDELE-DEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDE 362 (381)
Q Consensus 286 ~~El~dELe-eDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~e 362 (381)
.+||.-||. |+|++.|.+||.|-...|.++...+ .++|..||-|-+.++|++||..|||.|+++|.|+..+...
T Consensus 67 vgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~---KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 67 VGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTG---KSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ehhcchhcchHHHHHHhccccccccceEeecccCC---cccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 355555554 7899999999999999999876543 6899999999999999999999999999999999888754
No 40
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.23 E-value=6.7e-06 Score=88.42 Aligned_cols=80 Identities=10% Similarity=0.205 Sum_probs=65.8
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
..+.|++.|+- .++. ++||++.|++||.|++|.|.++...+ ..+|+.||+|.+.++|.+|+..|||..++|+
T Consensus 203 ~~~rLfVgnLp--~~vt---eedLk~lFs~FG~I~svrl~~D~~tg---ksKGfGFVeFe~~e~A~kAI~amNg~elgGr 274 (612)
T TIGR01645 203 KFNRIYVASVH--PDLS---ETDIKSVFEAFGEIVKCQLARAPTGR---GHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ 274 (612)
T ss_pred ccceEEeecCC--CCCC---HHHHHHHHhhcCCeeEEEEEecCCCC---CcCCeEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 34578888863 2222 35788999999999999999764432 4689999999999999999999999999999
Q ss_pred EEEEEecc
Q 016857 354 VVRATFYD 361 (381)
Q Consensus 354 ~V~a~fy~ 361 (381)
.|++.+.-
T Consensus 275 ~LrV~kAi 282 (612)
T TIGR01645 275 YLRVGKCV 282 (612)
T ss_pred EEEEEecC
Confidence 99998764
No 41
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.23 E-value=7e-06 Score=86.44 Aligned_cols=78 Identities=17% Similarity=0.240 Sum_probs=63.7
Q ss_pred EEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEE
Q 016857 277 VLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVR 356 (381)
Q Consensus 277 VVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~ 356 (381)
.|++.|+=.. + -+++|++.|++||.|.+|.|+++... ....|++||+|.+.++|.+|+..||+..|+|+.|+
T Consensus 2 sl~VgnLp~~--v---te~~L~~~F~~~G~v~~v~v~~d~~t---~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~ 73 (562)
T TIGR01628 2 SLYVGDLDPD--V---TEAKLYDLFKPFGPVLSVRVCRDSVT---RRSLGYGYVNFQNPADAERALETMNFKRLGGKPIR 73 (562)
T ss_pred eEEEeCCCCC--C---CHHHHHHHHHhcCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEE
Confidence 3566664322 1 26788899999999999999986543 25679999999999999999999999999999999
Q ss_pred EEeccc
Q 016857 357 ATFYDE 362 (381)
Q Consensus 357 a~fy~e 362 (381)
+.|...
T Consensus 74 i~~s~~ 79 (562)
T TIGR01628 74 IMWSQR 79 (562)
T ss_pred eecccc
Confidence 988753
No 42
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.20 E-value=6.9e-06 Score=80.90 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=67.6
Q ss_pred CCCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 271 NGPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 271 ~g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
.+-|=++|+|.-+- ++--+.+|++||++||.|++|.|..+...+ ...|.+||+|++..+...|.+..+|..+
T Consensus 97 ~gDPy~TLFv~RLn-----ydT~EskLrreF~~YG~IkrirlV~d~vTg---kskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 97 IGDPYKTLFVARLN-----YDTSESKLRREFEKYGPIKRIRLVRDKVTG---KSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred cCCccceeeeeecc-----ccccHHHHHHHHHhcCcceeEEEeeecccC---CccceEEEEeccHHHHHHHHHhccCcee
Confidence 35577777775532 233466899999999999999999875544 5789999999999999999999999999
Q ss_pred CCeEEEEEec
Q 016857 351 GGRVVRATFY 360 (381)
Q Consensus 351 ~GR~V~a~fy 360 (381)
+||.|.|.+=
T Consensus 169 dgrri~VDvE 178 (335)
T KOG0113|consen 169 DGRRILVDVE 178 (335)
T ss_pred cCcEEEEEec
Confidence 9999988764
No 43
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.19 E-value=3.1e-06 Score=84.23 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=64.9
Q ss_pred eEEEEecccC-CCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 276 RVLLLRNMVG-PGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 276 rVVvL~NMv~-~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
+=|.+.|+-- -- +.|++..|+|||+|.+|.|+-+.. -++|+.||.|++.++|.+|...|||....||+
T Consensus 97 kRLhVSNIPFrFR------dpDL~aMF~kfG~VldVEIIfNER-----GSKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 97 KRLHVSNIPFRFR------DPDLRAMFEKFGKVLDVEIIFNER-----GSKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred ceeEeecCCcccc------CccHHHHHHhhCceeeEEEEeccC-----CCCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 4567778631 11 247789999999999999998754 36899999999999999999999999999999
Q ss_pred EEEEeccccc
Q 016857 355 VRATFYDEER 364 (381)
Q Consensus 355 V~a~fy~ee~ 364 (381)
|.|.......
T Consensus 166 IEVn~ATarV 175 (376)
T KOG0125|consen 166 IEVNNATARV 175 (376)
T ss_pred EEEeccchhh
Confidence 9999887643
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.17 E-value=9.4e-06 Score=72.76 Aligned_cols=79 Identities=28% Similarity=0.392 Sum_probs=67.0
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
..+|++.|+= . +--++||.+.|.+||.|.+|.|..+... ....|++||+|.+.++|..|+..|+|..|.|+.
T Consensus 115 ~~~l~v~nL~--~---~~~~~~l~~~F~~~g~~~~~~~~~d~~~---~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLP--Y---DVTEEDLRELFKKFGPVKRVRLVRDRET---GKSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCC--C---CCCHHHHHHHHHhcCceeEEEeeecccc---CccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 5788888975 1 2236788899999999999999876522 357899999999999999999999999999999
Q ss_pred EEEEecc
Q 016857 355 VRATFYD 361 (381)
Q Consensus 355 V~a~fy~ 361 (381)
|.+.+..
T Consensus 187 ~~v~~~~ 193 (306)
T COG0724 187 LRVQKAQ 193 (306)
T ss_pred eEeeccc
Confidence 9999964
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=6.1e-06 Score=86.59 Aligned_cols=84 Identities=20% Similarity=0.317 Sum_probs=68.9
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
---|+|+||--.- . ..||+-.|++||.|..|+|++..+. ..+|++||+|....+|.+|++.|||..|+||.
T Consensus 117 k~rLIIRNLPf~~--k---~~dLk~vFs~~G~V~Ei~IP~k~dg----klcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~ 187 (678)
T KOG0127|consen 117 KWRLIIRNLPFKC--K---KPDLKNVFSNFGKVVEIVIPRKKDG----KLCGFAFVQFKEKKDAEKALEFFNGNKIDGRP 187 (678)
T ss_pred cceEEeecCCccc--C---cHHHHHHHhhcceEEEEEcccCCCC----CccceEEEEEeeHHHHHHHHHhccCceecCce
Confidence 3458899985221 1 1378899999999999999976554 35799999999999999999999999999999
Q ss_pred EEEEecc-cccccc
Q 016857 355 VRATFYD-EERFSK 367 (381)
Q Consensus 355 V~a~fy~-ee~F~~ 367 (381)
|-|.|.= -+.|+.
T Consensus 188 VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 188 VAVDWAVDKDTYED 201 (678)
T ss_pred eEEeeecccccccc
Confidence 9999973 466765
No 46
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.10 E-value=2.2e-05 Score=75.61 Aligned_cols=76 Identities=20% Similarity=0.184 Sum_probs=63.3
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
..+|.+.|+-..- -++||++.|+.||.|.+|.|.++.+ ..+++||+|.+.++|..|+ .|||..+.++.
T Consensus 5 g~TV~V~NLS~~t-----TE~dLrefFS~~G~I~~V~I~~D~e------t~gfAfVtF~d~~aaetAl-lLnGa~l~d~~ 72 (243)
T PLN03121 5 GYTAEVTNLSPKA-----TEKDVYDFFSHCGAIEHVEIIRSGE------YACTAYVTFKDAYALETAV-LLSGATIVDQR 72 (243)
T ss_pred ceEEEEecCCCCC-----CHHHHHHHHHhcCCeEEEEEecCCC------cceEEEEEECCHHHHHHHH-hcCCCeeCCce
Confidence 3578888865322 3578999999999999999997632 3489999999999998888 79999999999
Q ss_pred EEEEeccc
Q 016857 355 VRATFYDE 362 (381)
Q Consensus 355 V~a~fy~e 362 (381)
|.+.-+..
T Consensus 73 I~It~~~~ 80 (243)
T PLN03121 73 VCITRWGQ 80 (243)
T ss_pred EEEEeCcc
Confidence 99998763
No 47
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=98.09 E-value=2.2e-06 Score=90.25 Aligned_cols=34 Identities=44% Similarity=0.903 Sum_probs=30.8
Q ss_pred CChhhHHHHHHHHcCCCCCCCCCCCCCCccccccc
Q 016857 209 GGQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMA 243 (381)
Q Consensus 209 ~~~~~~~~kmm~KmGwk~G~GLG~~~qGI~~Pi~~ 243 (381)
....++|++||.||||. |.|||..+|||.+||..
T Consensus 684 lse~NKGhQml~KMGWs-G~GLGak~qGI~DPiSG 717 (757)
T KOG4368|consen 684 LGEENKGHQMLVKMGWS-GSGLGAKEQGIQDPISG 717 (757)
T ss_pred cccccchhhhHhhcCcc-cCCcccccccccCcccC
Confidence 44679999999999998 88999999999999984
No 48
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]
Probab=98.08 E-value=1.9e-06 Score=92.80 Aligned_cols=44 Identities=34% Similarity=0.526 Sum_probs=36.4
Q ss_pred hhHHHHHHHHcCCCCCCCCCCCCCCccccccccccc-Ccceeeec
Q 016857 212 MTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTD-RRAGVIVN 255 (381)
Q Consensus 212 ~~~~~kmm~KmGwk~G~GLG~~~qGI~~Pi~~~~~~-~~~Glg~~ 255 (381)
.++|++||.|||||+|+|||..++||.+||.+-... .+.|+|..
T Consensus 906 dNiGfQMLqKMGWKEGeGLGS~gkGI~dPVnkg~~~~~g~G~G~s 950 (988)
T KOG0965|consen 906 DNIGFQMLQKMGWKEGEGLGSLGKGIRDPVNKGAAGSLGWGWGGS 950 (988)
T ss_pred cchHHHHHHHhCccccccccccCcccccchhhcccccCCcccccC
Confidence 589999999999999999999999999999874433 34455553
No 49
>PF12656 G-patch_2: DExH-box splicing factor binding site
Probab=98.00 E-value=5.7e-06 Score=66.79 Aligned_cols=45 Identities=20% Similarity=0.537 Sum_probs=42.0
Q ss_pred hhHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCcceeeecC
Q 016857 212 MTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNA 256 (381)
Q Consensus 212 ~~~~~kmm~KmGwk~G~GLG~~~qGI~~Pi~~~~~~~~~Glg~~~ 256 (381)
..||+.||.-|||++|+|+|++.++.+.|+..+.+..+.|||+..
T Consensus 30 e~FG~AlLRGMGW~~~~~~g~~~~~~~~~~~~~~Rp~~lGLGA~~ 74 (77)
T PF12656_consen 30 EEFGAALLRGMGWKPGEGIGKNKKKSVKPVEPKRRPKGLGLGAKP 74 (77)
T ss_pred HHHHHHHHHHcCCCCCCCCCCCcccccCcccccccccCcCCCcCC
Confidence 389999999999999999999999999999999999999998854
No 50
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=1.5e-05 Score=77.89 Aligned_cols=74 Identities=23% Similarity=0.464 Sum_probs=61.8
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
.+.|..-|+-. -|. +++|+..|+.||.|..|.|+.+ +|+.||+|++-|+|.+||..+||...+|..
T Consensus 164 NtsVY~G~I~~--~lt---e~~mr~~Fs~fG~I~EVRvFk~---------qGYaFVrF~tkEaAahAIv~mNntei~G~~ 229 (321)
T KOG0148|consen 164 NTSVYVGNIAS--GLT---EDLMRQTFSPFGPIQEVRVFKD---------QGYAFVRFETKEAAAHAIVQMNNTEIGGQL 229 (321)
T ss_pred CceEEeCCcCc--ccc---HHHHHHhcccCCcceEEEEecc---------cceEEEEecchhhHHHHHHHhcCceeCceE
Confidence 34566667654 222 4568899999999999999963 599999999999999999999999999999
Q ss_pred EEEEeccc
Q 016857 355 VRATFYDE 362 (381)
Q Consensus 355 V~a~fy~e 362 (381)
|+|.+=-+
T Consensus 230 VkCsWGKe 237 (321)
T KOG0148|consen 230 VRCSWGKE 237 (321)
T ss_pred EEEecccc
Confidence 99987654
No 51
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.92 E-value=3.2e-05 Score=68.39 Aligned_cols=87 Identities=14% Similarity=0.212 Sum_probs=68.6
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.|++|.+-|+-.- --+|.|.|.|+|+|.|.+|.+-.+.- ....+|++||+|...++|..|++.+||...+.|
T Consensus 35 ~S~tvyVgNlSfy-----ttEEqiyELFs~cG~irriiMGLdr~---kktpCGFCFVeyy~~~dA~~AlryisgtrLddr 106 (153)
T KOG0121|consen 35 KSCTVYVGNLSFY-----TTEEQIYELFSKCGDIRRIIMGLDRF---KKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR 106 (153)
T ss_pred hcceEEEeeeeee-----ecHHHHHHHHHhccchheeEeccccC---CcCccceEEEEEecchhHHHHHHHhccCccccc
Confidence 5889999996421 23567889999999999998765432 235689999999999999999999999999999
Q ss_pred EEEEEe----ccccccccc
Q 016857 354 VVRATF----YDEERFSKN 368 (381)
Q Consensus 354 ~V~a~f----y~ee~F~~~ 368 (381)
.|.+.+ .+...|-+|
T Consensus 107 ~ir~D~D~GF~eGRQyGRG 125 (153)
T KOG0121|consen 107 PIRIDWDAGFVEGRQYGRG 125 (153)
T ss_pred ceeeeccccchhhhhhcCC
Confidence 998864 333445444
No 52
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.92 E-value=2e-05 Score=81.83 Aligned_cols=81 Identities=20% Similarity=0.291 Sum_probs=69.4
Q ss_pred eEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEE
Q 016857 276 RVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVV 355 (381)
Q Consensus 276 rVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V 355 (381)
++|++.|+- .+--+++|.+.|++.|.|.++.+..+.+.+ ..+|+.||+|.+.++|.+|+..|||+.|+||.+
T Consensus 19 ~~v~vgnip-----~~~se~~l~~~~~~~g~v~s~~~v~D~~tG---~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIP-----YEGSEEQLLSIFSGVGPVLSFRLVYDRETG---KPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCC-----CcccHHHHHHHHhccCccceeeecccccCC---CcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 788888853 123467889999999999999998876654 578999999999999999999999999999999
Q ss_pred EEEeccccc
Q 016857 356 RATFYDEER 364 (381)
Q Consensus 356 ~a~fy~ee~ 364 (381)
++.|-..++
T Consensus 91 ~v~~~~~~~ 99 (435)
T KOG0108|consen 91 RVNYASNRK 99 (435)
T ss_pred Eeecccccc
Confidence 999987643
No 53
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.91 E-value=3.4e-05 Score=79.48 Aligned_cols=71 Identities=25% Similarity=0.420 Sum_probs=60.0
Q ss_pred eEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEE
Q 016857 276 RVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVV 355 (381)
Q Consensus 276 rVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V 355 (381)
+||.++|+.. +--+|-|+++|++||.|++|+.++ -++||.|.+.++|.+|++.|||.-++|..|
T Consensus 260 KvLYVRNL~~-----~tTeE~lk~~F~~~G~veRVkk~r-----------DYaFVHf~eR~davkAm~~~ngkeldG~~i 323 (506)
T KOG0117|consen 260 KVLYVRNLME-----STTEETLKKLFNEFGKVERVKKPR-----------DYAFVHFAEREDAVKAMKETNGKELDGSPI 323 (506)
T ss_pred eeeeeeccch-----hhhHHHHHHHHHhccceEEeeccc-----------ceeEEeecchHHHHHHHHHhcCceecCceE
Confidence 5678888651 223566788999999999999985 269999999999999999999999999999
Q ss_pred EEEeccc
Q 016857 356 RATFYDE 362 (381)
Q Consensus 356 ~a~fy~e 362 (381)
.|.+.-.
T Consensus 324 EvtLAKP 330 (506)
T KOG0117|consen 324 EVTLAKP 330 (506)
T ss_pred EEEecCC
Confidence 9999854
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=97.91 E-value=1.6e-05 Score=81.63 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=58.9
Q ss_pred HHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee-C--CeEEEEEecccccc
Q 016857 293 LEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF-G--GRVVRATFYDEERF 365 (381)
Q Consensus 293 LeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F-~--GR~V~a~fy~ee~F 365 (381)
-+.||++.|++||.|++|.|.++.. ..++|++||+|++.+.|..|++.|||.+= . ...+.|.|.|..+=
T Consensus 137 te~evr~iFs~fG~Ied~~ilrd~~----~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 137 TENEVREIFSRFGHIEDCYILRDPD----GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred cHHHHHHHHHhhCccchhhheeccc----ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 3679999999999999999998654 35789999999999999999999999843 3 36899999997543
No 55
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.82 E-value=4.4e-05 Score=71.26 Aligned_cols=80 Identities=24% Similarity=0.404 Sum_probs=64.2
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
+..++.|.+-|+- .|+. +.||.+.|.|||.|..|.+-... -...++||+|++..+|..||..-||--|+
T Consensus 3 gr~~~~iyvGNLP--~diR---ekeieDlFyKyg~i~~ieLK~r~------g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 3 GRNSRRIYVGNLP--GDIR---EKEIEDLFYKYGRIREIELKNRP------GPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred CcccceEEecCCC--cchh---hccHHHHHhhhcceEEEEeccCC------CCCCeeEEEecCccchhhhhhcccccccC
Confidence 4457788888864 2332 34677888999999999875432 23579999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|..+.++|-..
T Consensus 72 g~rLRVEfprg 82 (241)
T KOG0105|consen 72 GCRLRVEFPRG 82 (241)
T ss_pred cceEEEEeccC
Confidence 99999999754
No 56
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.81 E-value=6.5e-05 Score=71.43 Aligned_cols=83 Identities=23% Similarity=0.355 Sum_probs=70.8
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+..+|+|+|+-+.-. .+||..-+...++.||+|..|..... ....|-+||.|.+.+.|-.|+..|+|..|-|
T Consensus 7 ~pn~TlYInnLnekI~-~~elkrsL~~LFsqfG~ildI~a~kt------~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg 79 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIK-KDELKRSLYLLFSQFGKILDISAFKT------PKMRGQAFVVFKETEAASAALRALQGFPFYG 79 (221)
T ss_pred CCCceEeehhcccccc-HHHHHHHHHHHHHhhCCeEEEEecCC------CCccCceEEEecChhHHHHHHHHhcCCcccC
Confidence 3556999999875533 36777788889999999999999853 2467999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
..+++.|...
T Consensus 80 K~mriqyA~s 89 (221)
T KOG4206|consen 80 KPMRIQYAKS 89 (221)
T ss_pred chhheecccC
Confidence 9999999865
No 57
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.79 E-value=7.8e-05 Score=79.97 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=59.7
Q ss_pred eEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC-CeE
Q 016857 276 RVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG-GRV 354 (381)
Q Consensus 276 rVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~-GR~ 354 (381)
+.|.|.|+-.. + -++||++.|++||.|.+|.|+++ .. ....|++||+|.+.++|.+|+..|||..+. |+.
T Consensus 59 ~~lFVgnLp~~--~---tEd~L~~~F~~~G~I~~vrl~~D-~s---G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~ 129 (578)
T TIGR01648 59 CEVFVGKIPRD--L---YEDELVPLFEKAGPIYELRLMMD-FS---GQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRL 129 (578)
T ss_pred CEEEeCCCCCC--C---CHHHHHHHHHhhCCEEEEEEEEC-CC---CCccceEEEEeCCHHHHHHHHHHcCCCeecCCcc
Confidence 46777776422 2 35688899999999999999886 32 257899999999999999999999999884 777
Q ss_pred EEEEe
Q 016857 355 VRATF 359 (381)
Q Consensus 355 V~a~f 359 (381)
|.+..
T Consensus 130 l~V~~ 134 (578)
T TIGR01648 130 LGVCI 134 (578)
T ss_pred ccccc
Confidence 65543
No 58
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.76 E-value=6e-05 Score=67.32 Aligned_cols=78 Identities=14% Similarity=0.290 Sum_probs=65.8
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
--||++.++-. +--++||.+.|.-||.|.+|.+--+...++ .+|.+.|+|++.++|+.|+..|||--+-|..
T Consensus 72 GwIi~VtgvHe-----EatEedi~d~F~dyGeiKNihLNLDRRtGy---~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 72 GWIIFVTGVHE-----EATEEDIHDKFADYGEIKNIHLNLDRRTGY---VKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred eEEEEEeccCc-----chhHHHHHHHHhhcccccceeecccccccc---ccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 44777777542 234689999999999999999987766653 5799999999999999999999999999999
Q ss_pred EEEEec
Q 016857 355 VRATFY 360 (381)
Q Consensus 355 V~a~fy 360 (381)
|.+.|+
T Consensus 144 v~VDw~ 149 (170)
T KOG0130|consen 144 VSVDWC 149 (170)
T ss_pred eeEEEE
Confidence 999886
No 59
>PLN03213 repressor of silencing 3; Provisional
Probab=97.75 E-value=7.4e-05 Score=77.99 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=61.2
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCH--HHHHHHHHhhCCCeeCC
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERS--EQTTKALIDLDGRFFGG 352 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~--esA~kAv~~LnGR~F~G 352 (381)
+--|++-||-- +--++||+.-|+.||.|.+|.|++. . ++||+||+|... .++.+|+..|||..+.|
T Consensus 10 gMRIYVGNLSy-----dVTEDDLravFSeFGsVkdVEIpRE--T-----GRGFAFVEMssdddaEeeKAISaLNGAEWKG 77 (759)
T PLN03213 10 GVRLHVGGLGE-----SVGRDDLLKIFSPMGTVDAVEFVRT--K-----GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG 77 (759)
T ss_pred ceEEEEeCCCC-----CCCHHHHHHHHHhcCCeeEEEEecc--c-----CCceEEEEecCCcHHHHHHHHHHhcCCeecC
Confidence 34566767531 1125688899999999999999842 2 379999999987 78999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
|.|++.-.-+
T Consensus 78 R~LKVNKAKP 87 (759)
T PLN03213 78 GRLRLEKAKE 87 (759)
T ss_pred ceeEEeeccH
Confidence 9999987754
No 60
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=97.69 E-value=7.7e-05 Score=76.68 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=59.7
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC-eeCC--eEEEEEeccccccc
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR-FFGG--RVVRATFYDEERFS 366 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR-~F~G--R~V~a~fy~ee~F~ 366 (381)
|.||++.|+|||.|..|.|.++...+ ..+|++||+|.+.++|.+|+++||.. .|-| ..|++.|.|.|+-+
T Consensus 48 E~dlr~lFe~yg~V~einl~kDk~t~---~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 48 EKDLRELFEKYGNVYEINLIKDKSTG---QSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERER 120 (510)
T ss_pred HHHHHHHHHHhCceeEEEeecccccC---cccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhc
Confidence 67999999999999999999876554 68999999999999999999999765 4544 68999999876543
No 61
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=97.63 E-value=0.00013 Score=71.25 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=66.4
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
|++=++-|-+.... -+||++..|+..|.|++|++.++.-.+ .+.|..||-|.+.++|++|++.|||-....++
T Consensus 40 skTNLIvNYLPQ~M----TqdE~rSLF~SiGeiEScKLvRDKitG---qSLGYGFVNYv~p~DAe~AintlNGLrLQ~KT 112 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNM----TQDELRSLFGSIGEIESCKLVRDKITG---QSLGYGFVNYVRPKDAEKAINTLNGLRLQNKT 112 (360)
T ss_pred ccceeeeeeccccc----CHHHHHHHhhcccceeeeeeeeccccc---cccccceeeecChHHHHHHHhhhcceeeccce
Confidence 44444555443322 367889999999999999999875443 67899999999999999999999999999999
Q ss_pred EEEEeccc
Q 016857 355 VRATFYDE 362 (381)
Q Consensus 355 V~a~fy~e 362 (381)
|+++|.-.
T Consensus 113 IKVSyARP 120 (360)
T KOG0145|consen 113 IKVSYARP 120 (360)
T ss_pred EEEEeccC
Confidence 99999854
No 62
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.61 E-value=0.0002 Score=75.59 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=65.6
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhh-----CC-C
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDL-----DG-R 348 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~L-----nG-R 348 (381)
-++|+|+|+. .|--+++|.++|++||.|.-+.|...... ..+.|.+||.|.+...|.+|+.+- .| -
T Consensus 292 ~~tVFvRNL~-----fD~tEEel~~~fskFG~v~ya~iV~~k~T---~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ 363 (678)
T KOG0127|consen 292 GKTVFVRNLP-----FDTTEEELKEHFSKFGEVKYAIIVKDKDT---GHSKGTAFVKFKTQIAAQNCIEAASPASEDGSV 363 (678)
T ss_pred cceEEEecCC-----ccccHHHHHHHHHhhccceeEEEEeccCC---CCcccceEEEeccHHHHHHHHHhcCccCCCceE
Confidence 4799999975 34457899999999999999888875443 367899999999999999999987 44 6
Q ss_pred eeCCeEEEEEecc
Q 016857 349 FFGGRVVRATFYD 361 (381)
Q Consensus 349 ~F~GR~V~a~fy~ 361 (381)
.++||.+.+...=
T Consensus 364 ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 364 LLDGRLLKVTLAV 376 (678)
T ss_pred EEeccEEeeeecc
Confidence 7899999988753
No 63
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.60 E-value=0.00016 Score=77.94 Aligned_cols=79 Identities=23% Similarity=0.295 Sum_probs=63.3
Q ss_pred EEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEE
Q 016857 278 LLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRA 357 (381)
Q Consensus 278 VvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a 357 (381)
|++.|+-- ++-.+++...+.++|.|.+|.|.......-...+.|++||+|.+.++|.+|++.|+|...+|+.|.+
T Consensus 518 lfvkNlnf-----~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 518 LFVKNLNF-----DTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred hhhhcCCc-----ccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 55555431 3345788899999999999999875432112246699999999999999999999999999999999
Q ss_pred Eecc
Q 016857 358 TFYD 361 (381)
Q Consensus 358 ~fy~ 361 (381)
.|..
T Consensus 593 k~S~ 596 (725)
T KOG0110|consen 593 KISE 596 (725)
T ss_pred Eecc
Confidence 9987
No 64
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.58 E-value=0.00017 Score=67.97 Aligned_cols=67 Identities=21% Similarity=0.270 Sum_probs=58.4
Q ss_pred HHHHHHHHhcc-CCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEecccc
Q 016857 294 EDEVGSECAKY-GTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEE 363 (381)
Q Consensus 294 eeDI~EECsKY-G~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~ee 363 (381)
+.++..-+..| |.|.++.+.++...+ .+.|++||+|++.+-|.-|...||+-.|.|+.+.|.|.+.+
T Consensus 63 e~~~~~~~~q~~g~v~r~rlsRnkrTG---NSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 63 ETEILNYFRQFGGTVTRFRLSRNKRTG---NSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred HHHHhhhhhhcCCeeEEEEeecccccC---CcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 45566666766 888888888887655 68999999999999999999999999999999999999987
No 65
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.55 E-value=1.3e-05 Score=74.51 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=63.9
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
|--|+|-|+-- +| -+.||..-|+.||.|++|.+.++...+ .+.|++|+.|+|+.+..-||.+|||-.+.||+
T Consensus 35 sA~Iyiggl~~--~L---tEgDil~VFSqyGe~vdinLiRDk~TG---KSKGFaFLcYEDQRSTILAVDN~NGiki~gRt 106 (219)
T KOG0126|consen 35 SAYIYIGGLPY--EL---TEGDILCVFSQYGEIVDINLIRDKKTG---KSKGFAFLCYEDQRSTILAVDNLNGIKILGRT 106 (219)
T ss_pred ceEEEECCCcc--cc---cCCcEEEEeeccCceEEEEEEecCCCC---cccceEEEEecCccceEEEEeccCCceeccee
Confidence 55677777521 11 134566778999999999999976654 68999999999999999999999999999999
Q ss_pred EEEEecc
Q 016857 355 VRATFYD 361 (381)
Q Consensus 355 V~a~fy~ 361 (381)
|++.-+.
T Consensus 107 irVDHv~ 113 (219)
T KOG0126|consen 107 IRVDHVS 113 (219)
T ss_pred EEeeecc
Confidence 9987653
No 66
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.51 E-value=0.00029 Score=71.83 Aligned_cols=77 Identities=18% Similarity=0.391 Sum_probs=60.9
Q ss_pred EEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEE
Q 016857 278 LLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRA 357 (381)
Q Consensus 278 VvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a 357 (381)
|.|.|+= + +++ -.+|.+-|+.||.|.+|.|..+... ..|. ||+|++.++|.+|+..|||..++|+.|.+
T Consensus 79 ~~i~nl~-~-~~~---~~~~~d~f~~~g~ilS~kv~~~~~g-----~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~v 147 (369)
T KOG0123|consen 79 VFIKNLD-E-SID---NKSLYDTFSEFGNILSCKVATDENG-----SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYV 147 (369)
T ss_pred eeecCCC-c-ccC---cHHHHHHHHhhcCeeEEEEEEcCCC-----ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEE
Confidence 7777732 1 122 1356678899999999999986542 6788 99999999999999999999999999988
Q ss_pred Eecccccc
Q 016857 358 TFYDEERF 365 (381)
Q Consensus 358 ~fy~ee~F 365 (381)
.-+.....
T Consensus 148 g~~~~~~e 155 (369)
T KOG0123|consen 148 GLFERKEE 155 (369)
T ss_pred eeccchhh
Confidence 77765443
No 67
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.48 E-value=0.00032 Score=70.52 Aligned_cols=74 Identities=19% Similarity=0.491 Sum_probs=57.6
Q ss_pred HHHhccCCeeEEEEeeeCCCC-CCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEeccc---ccccccccCCC
Q 016857 299 SECAKYGTVTRVLIFEITEPN-FPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDE---ERFSKNELAPL 373 (381)
Q Consensus 299 EECsKYG~V~~V~I~~~~~~~-~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~e---e~F~~~~l~p~ 373 (381)
+.|++||.|.+|.|-+..... ......| |||.|.+.++|.+|+...+|.+.+||.|+|.|-.. .-|.++..-|.
T Consensus 139 eyFGQyGkI~KIvvNkkt~s~nst~~h~g-vYITy~~kedAarcIa~vDgs~~DGr~lkatYGTTKYCtsYLRn~~CpN 216 (480)
T COG5175 139 EYFGQYGKIKKIVVNKKTSSLNSTASHAG-VYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTTKYCTSYLRNAVCPN 216 (480)
T ss_pred hhhhhccceeEEEecccccccccccccce-EEEEecchHHHHHHHHHhccccccCceEeeecCchHHHHHHHcCCCCCC
Confidence 678999999999998765322 1112244 89999999999999999999999999999998765 34555544444
No 68
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=97.38 E-value=0.00099 Score=65.17 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=63.9
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
--||++-|+-...| + .-+-+.|+.||.|.+|+|.++-..+ .-+|+.||...+-++|..|+..|||-..++|.
T Consensus 278 g~ciFvYNLspd~d--e---~~LWQlFgpFGAv~nVKvirD~ttn---kCKGfgFVtMtNYdEAamAi~sLNGy~lg~rv 349 (360)
T KOG0145|consen 278 GWCIFVYNLSPDAD--E---SILWQLFGPFGAVTNVKVIRDFTTN---KCKGFGFVTMTNYDEAAMAIASLNGYRLGDRV 349 (360)
T ss_pred eeEEEEEecCCCch--H---hHHHHHhCcccceeeEEEEecCCcc---cccceeEEEecchHHHHHHHHHhcCccccceE
Confidence 45788888653322 1 2245778999999999999865433 56899999999999999999999999999999
Q ss_pred EEEEecc
Q 016857 355 VRATFYD 361 (381)
Q Consensus 355 V~a~fy~ 361 (381)
+++.|-.
T Consensus 350 LQVsFKt 356 (360)
T KOG0145|consen 350 LQVSFKT 356 (360)
T ss_pred EEEEEec
Confidence 9999854
No 69
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.38 E-value=0.0002 Score=70.77 Aligned_cols=73 Identities=25% Similarity=0.391 Sum_probs=60.7
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
++|.-|.+-|+-..-. -+|+++-|+|||.|+.+.|.+ +.+||.|...++|..|++.|||+.|+|
T Consensus 76 k~stkl~vgNis~tct-----n~ElRa~fe~ygpviecdivk-----------dy~fvh~d~~eda~~air~l~~~~~~g 139 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCT-----NQELRAKFEKYGPVIECDIVK-----------DYAFVHFDRAEDAVEAIRGLDNTEFQG 139 (346)
T ss_pred CCccccccCCCCcccc-----CHHHhhhhcccCCceeeeeec-----------ceeEEEEeeccchHHHHhccccccccc
Confidence 4666677777654322 247889999999999999975 579999999999999999999999999
Q ss_pred eEEEEEecc
Q 016857 353 RVVRATFYD 361 (381)
Q Consensus 353 R~V~a~fy~ 361 (381)
+.+++....
T Consensus 140 k~m~vq~st 148 (346)
T KOG0109|consen 140 KRMHVQLST 148 (346)
T ss_pred ceeeeeeec
Confidence 999998764
No 70
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=97.37 E-value=0.00032 Score=67.38 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEeccc
Q 016857 292 ELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDE 362 (381)
Q Consensus 292 ELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~e 362 (381)
.-.|++++-|++||.|+..+|..+... ..++|..||.|.|.++|.+|+++-| -.++||+..|.+...
T Consensus 24 T~~~~l~~yFeqfGeI~eavvitd~~t---~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 24 THKETLRRYFEQFGEIVEAVVITDKNT---GRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred cchHHHHHHHHHhCceEEEEEEeccCC---ccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 345788999999999999888875543 4789999999999999999999987 467999888877654
No 71
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0004 Score=66.44 Aligned_cols=92 Identities=21% Similarity=0.338 Sum_probs=71.0
Q ss_pred CCCceEEEEecccCCCCChhhHHHHH-HHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEV-GSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI-~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
.+--|+|++-.+ .||+-|-| ...|--||.|..|.|+.+.+.+ ..+|+.||+|.-.|+|..|+.+||+.-.
T Consensus 7 a~~KrtlYVGGl------adeVtekvLhaAFIPFGDI~dIqiPlDyesq---kHRgFgFVefe~aEDAaaAiDNMnesEL 77 (298)
T KOG0111|consen 7 ANQKRTLYVGGL------ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQ---KHRGFGFVEFEEAEDAAAAIDNMNESEL 77 (298)
T ss_pred cccceeEEeccc------hHHHHHHHHHhccccccchhhcccccchhcc---cccceeEEEeeccchhHHHhhcCchhhh
Confidence 334567776553 34444433 4556699999999999876543 5789999999999999999999999999
Q ss_pred CCeEEEEEecccccccccccCC
Q 016857 351 GGRVVRATFYDEERFSKNELAP 372 (381)
Q Consensus 351 ~GR~V~a~fy~ee~F~~~~l~p 372 (381)
.||+|++.|.-..+-..+...|
T Consensus 78 ~GrtirVN~AkP~kikegsqkP 99 (298)
T KOG0111|consen 78 FGRTIRVNLAKPEKIKEGSQKP 99 (298)
T ss_pred cceeEEEeecCCccccCCCCCC
Confidence 9999999999877665554444
No 72
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.29 E-value=0.00011 Score=68.94 Aligned_cols=45 Identities=24% Similarity=0.508 Sum_probs=42.3
Q ss_pred hhHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCcceeeecC
Q 016857 212 MTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNA 256 (381)
Q Consensus 212 ~~~~~kmm~KmGwk~G~GLG~~~qGI~~Pi~~~~~~~~~Glg~~~ 256 (381)
++.|.++|.++||.+++|||.+++|...||....++++.|||+.-
T Consensus 128 ks~GyrLl~~~GW~pe~GLGp~~~Grr~PvrTvlkkdr~GLG~e~ 172 (223)
T KOG2384|consen 128 KSLGYRLLSQYGWSPEAGLGPENQGRRAPVRTVLKKDRIGLGTEI 172 (223)
T ss_pred CCchHHHHHhcCCCcccCCCccccCcccchhHHHhhcccccchhh
Confidence 588999999999999999999999999999999999999999853
No 73
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00049 Score=69.59 Aligned_cols=63 Identities=16% Similarity=0.366 Sum_probs=56.1
Q ss_pred HHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEecc
Q 016857 296 EVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYD 361 (381)
Q Consensus 296 DI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~ 361 (381)
|+.-.|+.||+|.+|.|.++...+ ++.-.+||+|++.+++.+|.-.|+.-.++.|.|++.|..
T Consensus 255 DLeiIFSrFG~i~sceVIRD~ktg---dsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 255 DLEIIFSRFGKIVSCEVIRDRKTG---DSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred chhhHHhhcccceeeeEEeccccc---chhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 444678999999999999987654 456789999999999999999999999999999999975
No 74
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=97.15 E-value=0.00098 Score=62.12 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=61.4
Q ss_pred EEEEecccCCCCChhhHHHH-HHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEE
Q 016857 277 VLLLRNMVGPGEVDDELEDE-VGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVV 355 (381)
Q Consensus 277 VVvL~NMv~~~El~dELeeD-I~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V 355 (381)
.|.+-| |++-+.++ |.|.|-+.|.|++|.|+++...+ ...|++||+|.++|+|.-|++.||+-..-||.|
T Consensus 11 tiyvgn------ld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~---~~qGygF~Ef~~eedadYAikiln~VkLYgrpI 81 (203)
T KOG0131|consen 11 TLYVGN------LDEKVSEELLYELFIQAGPVVNLHIPKDRVTQ---KHQGYGFAEFRTEEDADYAIKILNMVKLYGRPI 81 (203)
T ss_pred eEEEec------CCHHHHHHHHHHHHHhcCceeeeecchhhhcc---cccceeEEEEechhhhHHHHHHHHHHHhcCcee
Confidence 566656 33444433 45666799999999999876543 568999999999999999999999999999999
Q ss_pred EEEecc
Q 016857 356 RATFYD 361 (381)
Q Consensus 356 ~a~fy~ 361 (381)
++.-.+
T Consensus 82 rv~kas 87 (203)
T KOG0131|consen 82 RVNKAS 87 (203)
T ss_pred EEEecc
Confidence 998877
No 75
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=97.13 E-value=0.0012 Score=68.47 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee-CCeEEEEEec
Q 016857 292 ELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF-GGRVVRATFY 360 (381)
Q Consensus 292 ELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F-~GR~V~a~fy 360 (381)
-+++|+.-.|+|-|+|-.+.++.+...+ ..+|.+||.|.+.+.|..|++.||+.-| .|+.|.|+..
T Consensus 95 ~~EdeLvplfEkiG~I~elRLMmD~~sG---~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 95 VFEDELVPLFEKIGKIYELRLMMDPFSG---DNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred ccchhhHHHHHhccceeeEEEeecccCC---CCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 3577888999999999999999875544 6799999999999999999999999866 7888877654
No 76
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.11 E-value=0.0012 Score=64.87 Aligned_cols=69 Identities=19% Similarity=0.321 Sum_probs=58.4
Q ss_pred HHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCe-eCC--eEEEEEecccccc
Q 016857 293 LEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRF-FGG--RVVRATFYDEERF 365 (381)
Q Consensus 293 LeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~-F~G--R~V~a~fy~ee~F 365 (381)
-+|||+..|.-||.|..|+|.+-.+. .++|++||+|.+-.+|..||+.|||.. .-| ..+.+.|.|.++-
T Consensus 32 ~e~dvrrlf~pfG~~~e~tvlrg~dg----~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkE 103 (371)
T KOG0146|consen 32 SEDDVRRLFQPFGNIEECTVLRGPDG----NSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 103 (371)
T ss_pred cHHHHHHHhcccCCcceeEEecCCCC----CCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHH
Confidence 46799999999999999999985443 578999999999999999999999964 333 5788999998753
No 77
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.01 E-value=0.003 Score=67.10 Aligned_cols=90 Identities=16% Similarity=0.228 Sum_probs=67.6
Q ss_pred CceEEEEecccCCCCC-hhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 274 PTRVLLLRNMVGPGEV-DDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 274 pSrVVvL~NMv~~~El-~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
-..||++.|+--.+.. -+-|+--|..-++|||+|.+++++...+.+ ..|.+|++|.+..+|..|++.|||..|+-
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg----tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG----TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC----eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 4568888886433322 245667788889999999999998665443 57999999999999999999999999987
Q ss_pred e-EEEEEec-ccccccc
Q 016857 353 R-VVRATFY-DEERFSK 367 (381)
Q Consensus 353 R-~V~a~fy-~ee~F~~ 367 (381)
+ +..+..+ +-++|+.
T Consensus 133 nHtf~v~~f~d~eky~s 149 (698)
T KOG2314|consen 133 NHTFFVRLFKDFEKYES 149 (698)
T ss_pred cceEEeehhhhHHHhcC
Confidence 5 4444444 3455554
No 78
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.00076 Score=71.20 Aligned_cols=72 Identities=19% Similarity=0.291 Sum_probs=57.4
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-.. | -.+++++.+++||.|..|.--. ...|.|||+|-|+.+|++|++.||++.+.
T Consensus 72 ~~~~~~L~v~nl~~~--V---sn~~L~~~f~~yGeir~ir~t~--------~~~~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRS--V---SNDTLLRIFGAYGEIREIRETP--------NKRGIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred cCccceEEEEecCCc--C---CHHHHHHHHHhhcchhhhhccc--------ccCceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 357889999995321 1 1356678889999999965432 23589999999999999999999999999
Q ss_pred CeEEE
Q 016857 352 GRVVR 356 (381)
Q Consensus 352 GR~V~ 356 (381)
|+.|+
T Consensus 139 ~~~~k 143 (549)
T KOG4660|consen 139 GKRIK 143 (549)
T ss_pred hhhhc
Confidence 99887
No 79
>KOG0154 consensus RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains [General function prediction only]
Probab=96.85 E-value=0.0014 Score=70.15 Aligned_cols=46 Identities=43% Similarity=0.812 Sum_probs=43.0
Q ss_pred ChhhHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCcceeeec
Q 016857 210 GQMTAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVN 255 (381)
Q Consensus 210 ~~~~~~~kmm~KmGwk~G~GLG~~~qGI~~Pi~~~~~~~~~Glg~~ 255 (381)
.+.+++.+||.+|||..|+|||+..+||+.||+.....++.|+|..
T Consensus 510 ~~sn~~~~~l~~~gw~~g~Glg~~~~g~~~~~e~~~~~~~~~lg~~ 555 (573)
T KOG0154|consen 510 DTSNVGNRMLQSMGWKEGSGLGKKNQGIKEPIEAEGRDRGAGLGAK 555 (573)
T ss_pred CCCccchhhhhccCcccccccccccCCCcccccccccccCCCCCcc
Confidence 3568999999999999999999999999999999999999999985
No 80
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.62 E-value=0.0036 Score=66.13 Aligned_cols=82 Identities=26% Similarity=0.350 Sum_probs=65.5
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
+++.+ |++.|+-..- -+++++..|+-||.|+.|.++.+.+.+ ...|+.||+|.+.++|.+|+..|||-...
T Consensus 276 ~p~~r-l~vgnLHfNi-----te~~lr~ifepfg~Ie~v~l~~d~~tG---~skgfGfi~f~~~~~ar~a~e~lngfelA 346 (549)
T KOG0147|consen 276 GPMRR-LYVGNLHFNI-----TEDMLRGIFEPFGKIENVQLTKDSETG---RSKGFGFITFVNKEDARKALEQLNGFELA 346 (549)
T ss_pred cchhh-hhhcccccCc-----hHHHHhhhccCcccceeeeeccccccc---cccCcceEEEecHHHHHHHHHHhccceec
Confidence 44454 5666653221 145778889999999999999876544 57899999999999999999999998889
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
||.|++..+.+
T Consensus 347 Gr~ikV~~v~~ 357 (549)
T KOG0147|consen 347 GRLIKVSVVTE 357 (549)
T ss_pred CceEEEEEeee
Confidence 99999888755
No 81
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.60 E-value=0.0074 Score=60.99 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=60.1
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhh-CCCeeCC
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDL-DGRFFGG 352 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~L-nGR~F~G 352 (381)
..+.|.|.++-+ .-++.||+..|.+||.|++|.|.. ..+.+||+|++-++|+.|...+ |--.++|
T Consensus 227 ~I~tLyIg~l~d-----~v~e~dIrdhFyqyGeirsi~~~~---------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G 292 (377)
T KOG0153|consen 227 SIKTLYIGGLND-----EVLEQDIRDHFYQYGEIRSIRILP---------RKGCAFVTFTTREAAEKAAEKSFNKLVING 292 (377)
T ss_pred ceeEEEeccccc-----chhHHHHHHHHhhcCCeeeEEeec---------ccccceeeehhhHHHHHHHHhhcceeeecc
Confidence 456788877654 236789999999999999999973 3578999999999999987554 6557799
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.+.+-..
T Consensus 293 ~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 293 FRLKIKWGRP 302 (377)
T ss_pred eEEEEEeCCC
Confidence 9999995544
No 82
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=96.56 E-value=0.0029 Score=64.41 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=52.8
Q ss_pred HHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEE
Q 016857 295 DEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRAT 358 (381)
Q Consensus 295 eDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~ 358 (381)
+-|+..|.-||.|++|.+.-+.- ....+|++||+|+=.|.|.-|+..|||-..+||.|++.
T Consensus 128 DtiR~AF~PFGPIKSInMSWDp~---T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 128 DTIRRAFDPFGPIKSINMSWDPA---TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HHHHhhccCCCCcceeecccccc---cccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 45788899999999998764432 24678999999999999999999999999999999886
No 83
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.46 E-value=0.0053 Score=65.46 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=55.2
Q ss_pred HHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEecc
Q 016857 295 DEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYD 361 (381)
Q Consensus 295 eDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~ 361 (381)
.|++..|+|||+|+-.+|..+... +-...+.||.+.+.++|.+||..||-.-+.||.|.|+-.-
T Consensus 420 tDLKnlFSKyGKVvGAKVVTNaRs---PGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 420 TDLKNLFSKYGKVVGAKVVTNARS---PGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred hHHHHHHHHhcceeceeeeecCCC---CCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 578889999999999999876543 2346789999999999999999999999999999987653
No 84
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.0076 Score=61.61 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=57.3
Q ss_pred HHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEeccc
Q 016857 293 LEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDE 362 (381)
Q Consensus 293 LeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~e 362 (381)
.+..+.+.|+.+|.|.+|.|+++. . +.|.+||.|.+.++|.+|+..||.-.+.|+.|+.-+...
T Consensus 11 ~e~~l~~~f~~~~~v~s~rvc~d~-t-----slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 11 TEAMLFDKFSPAGPVLSIRVCRDA-T-----SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred ChHHHHHHhcccCCceeEEEeecC-C-----ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 356778899999999999999865 3 789999999999999999999999999999999877654
No 85
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=96.30 E-value=0.0069 Score=60.12 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=50.2
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEec
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFY 360 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy 360 (381)
+.||+..|++||+|..|-|.++ ..||..++...|..|+++|||-.++|..|.++=.
T Consensus 16 ~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 16 EQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred hHHHHHHHHhhCceEeeeeecc-----------cceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 5788999999999999999864 3788889999999999999999999999988755
No 86
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.29 E-value=0.028 Score=50.78 Aligned_cols=80 Identities=28% Similarity=0.452 Sum_probs=54.9
Q ss_pred CCCCCceEEEEecccC---CC--CChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHh
Q 016857 270 FNGPPTRVLLLRNMVG---PG--EVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALID 344 (381)
Q Consensus 270 ~~g~pSrVVvL~NMv~---~~--El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~ 344 (381)
..|+|.-+|++. +.. .+ .++++|..++.+.+..||.|.=|.+.. +..+|.|.+-++|.+|+ .
T Consensus 22 ~~GPpDaTVvVs-v~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-----------~~mwVTF~dg~sALaal-s 88 (146)
T PF08952_consen 22 SQGPPDATVVVS-VDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-----------DTMWVTFRDGQSALAAL-S 88 (146)
T ss_dssp ----TT-EEEEE-ECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-----------TCEEEEESSCHHHHHHH-H
T ss_pred hcCCCCceEEEE-ecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-----------CeEEEEECccHHHHHHH-c
Confidence 446666666653 333 12 356789999999999999988776652 45999999999999876 5
Q ss_pred hCCCeeCCeEEEEEeccc
Q 016857 345 LDGRFFGGRVVRATFYDE 362 (381)
Q Consensus 345 LnGR~F~GR~V~a~fy~e 362 (381)
|+|-.++|+.|++..=+.
T Consensus 89 ~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 89 LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp GCCSEETTEEEEEEE---
T ss_pred cCCcEECCEEEEEEeCCc
Confidence 799999999999988765
No 87
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.17 E-value=0.0068 Score=65.76 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=63.7
Q ss_pred EEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEE
Q 016857 277 VLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVR 356 (381)
Q Consensus 277 VVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~ 356 (381)
=|+++|+-- .--..||+..|+.||.|.+|.|+..... ...+|++||.|-+..+|.+|+++|.+.-|-||.+.
T Consensus 615 KIlVRNipF-----eAt~rEVr~LF~aFGqlksvRlPKK~~k---~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLV 686 (725)
T KOG0110|consen 615 KILVRNIPF-----EATKREVRKLFTAFGQLKSVRLPKKIGK---GAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLV 686 (725)
T ss_pred eeeeeccch-----HHHHHHHHHHHhcccceeeeccchhhcc---hhhccceeeeccCcHHHHHHHHhhcccceechhhh
Confidence 355666541 1234689999999999999999976221 24589999999999999999999999999999999
Q ss_pred EEecccc
Q 016857 357 ATFYDEE 363 (381)
Q Consensus 357 a~fy~ee 363 (381)
.+|...+
T Consensus 687 LEwA~~d 693 (725)
T KOG0110|consen 687 LEWAKSD 693 (725)
T ss_pred eehhccc
Confidence 9888654
No 88
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=96.12 E-value=0.0018 Score=61.99 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=40.7
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCC---cccccccccccCcceeeecC
Q 016857 213 TAAQRMMAKMGWKEGQGLGRQEQG---ITTPLMARKTDRRAGVIVNA 256 (381)
Q Consensus 213 ~~~~kmm~KmGwk~G~GLG~~~qG---I~~Pi~~~~~~~~~Glg~~~ 256 (381)
++|+.+|.+|||++|.-||++..+ |++||.+..+..+.|+|...
T Consensus 82 ~~gf~lm~~Mg~kpg~~lgkq~e~~~~r~epI~~dI~~~r~g~G~ed 128 (268)
T KOG1994|consen 82 KPGFSLMNDMGMKPGRFLGKQSEMKNKRLEPIWYDIQVAREGMGDED 128 (268)
T ss_pred CcChHHHHHhCCCccchhccccccccccccceeehHHHHhhccCccc
Confidence 667999999999999999999999 99999999999999999854
No 89
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=96.06 E-value=0.013 Score=61.02 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=57.7
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.++.|+++|+-..-. -+-+++.|..||.|.-.-|+++. ..+| -|+|.+.++|++|+..|||-..+||
T Consensus 535 Ka~qIiirNlP~dfT-----WqmlrDKfre~G~v~yadime~G------kskG--VVrF~s~edAEra~a~Mngs~l~Gr 601 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFT-----WQMLRDKFREIGHVLYADIMENG------KSKG--VVRFFSPEDAERACALMNGSRLDGR 601 (608)
T ss_pred cccEEEEecCCcccc-----HHHHHHHHHhccceehhhhhccC------Cccc--eEEecCHHHHHHHHHHhccCcccCc
Confidence 355689999753211 23566777889999998886532 2234 7999999999999999999999999
Q ss_pred EEEEEec
Q 016857 354 VVRATFY 360 (381)
Q Consensus 354 ~V~a~fy 360 (381)
.|.+.|+
T Consensus 602 ~I~V~y~ 608 (608)
T KOG4212|consen 602 NIKVTYF 608 (608)
T ss_pred eeeeeeC
Confidence 9999985
No 90
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=95.96 E-value=0.0058 Score=60.11 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=54.4
Q ss_pred HHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEec
Q 016857 295 DEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFY 360 (381)
Q Consensus 295 eDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy 360 (381)
.||...|--||.|++-+|+.++..| .++.+.||.|.+..+|..||..|||-.++-+.+++.+-
T Consensus 300 aEliQmF~PFGhivSaKVFvDRATN---QSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 300 AELIQMFLPFGHIVSAKVFVDRATN---QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred HHHHHHhccccceeeeeeeehhccc---cccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 3566788999999999999877654 67899999999999999999999999998888877653
No 91
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=95.85 E-value=0.0065 Score=58.01 Aligned_cols=60 Identities=25% Similarity=0.318 Sum_probs=50.2
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEeccccc
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEER 364 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~ee~ 364 (381)
+.||.+-+.+||.|..|.+- .|++||+|.+..+|..|+..|||+.|+|-.+.+++--...
T Consensus 15 ~~d~E~~f~~yg~~~d~~mk-----------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 15 ERDVERFFKGYGKIPDADMK-----------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred hhHHHHHHhhccccccceee-----------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 45777888999999988764 3778999999999999999999999999887777665433
No 92
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=95.79 E-value=0.016 Score=54.18 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=51.4
Q ss_pred CChhhHHHHHHHHHhccCCeeEE-EEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEecc
Q 016857 288 EVDDELEDEVGSECAKYGTVTRV-LIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYD 361 (381)
Q Consensus 288 El~dELeeDI~EECsKYG~V~~V-~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~ 361 (381)
++|+.+. ...|++||.+.+. .|++.... ....|+.||-|.+.+.+.+|+..|||.+.+.|.|+++|.-
T Consensus 107 ~vDe~~L---~dtFsafG~l~~~P~i~rd~~t---g~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 107 EVDEKLL---YDTFSAFGVLISPPKIMRDPDT---GNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred chhHHHH---HHHHHhccccccCCcccccccC---CCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 4554444 4556899987652 33333221 2467899999999999999999999999999999999874
No 93
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.78 E-value=0.058 Score=48.88 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=49.6
Q ss_pred cccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEec
Q 016857 282 NMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFY 360 (381)
Q Consensus 282 NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy 360 (381)
||-..+| + ..|....+.||.|.+|..+ +.-.+.|.|.|..+|.+|+.++..|. .|+.++|.+-
T Consensus 97 nm~~~ed----l-~sV~~~Ls~fGpI~SVT~c----------GrqsavVvF~d~~SAC~Av~Af~s~~-pgtm~qCsWq 159 (166)
T PF15023_consen 97 NMQPTED----L-KSVIQRLSVFGPIQSVTLC----------GRQSAVVVFKDITSACKAVSAFQSRA-PGTMFQCSWQ 159 (166)
T ss_pred cCChHHH----H-HHHHHHHHhcCCcceeeec----------CCceEEEEehhhHHHHHHHHhhcCCC-CCceEEeecc
Confidence 5554443 3 4677888999999999986 23458899999999999999999865 7788887754
No 94
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.78 E-value=0.066 Score=44.50 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=45.6
Q ss_pred EEEEecccCCCCChhhHHHHHHHHHhcc-CCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEE
Q 016857 277 VLLLRNMVGPGEVDDELEDEVGSECAKY-GTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVV 355 (381)
Q Consensus 277 VVvL~NMv~~~El~dELeeDI~EECsKY-G~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V 355 (381)
.|++.|+-...| -.-+..=++..+..+ |+|.+|. .+.++|+|.+.+.|.+|.+-|+|...-|+.|
T Consensus 4 ~L~V~NLP~~~d-~~~I~~RL~qLsdNCGGkVl~v~-------------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 4 LLYVSNLPTNKD-PSSIKNRLRQLSDNCGGKVLSVS-------------GGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEES--TTS--HHHHHHHHHHHHHTTT--EEE---------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred EEEEecCCCCCC-HHHHHHHHHHHhhccCCEEEEEe-------------CCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 577778764433 134555566667655 4587772 2679999999999999999999999999999
Q ss_pred EEEeccc
Q 016857 356 RATFYDE 362 (381)
Q Consensus 356 ~a~fy~e 362 (381)
.+.|.+.
T Consensus 70 ~v~~~~~ 76 (90)
T PF11608_consen 70 SVSFSPK 76 (90)
T ss_dssp EEESS--
T ss_pred EEEEcCC
Confidence 9999975
No 95
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.77 E-value=0.0071 Score=64.67 Aligned_cols=94 Identities=20% Similarity=0.313 Sum_probs=72.5
Q ss_pred CCCCceEEEEecccCCCCChhhHHHHHHHHHh-ccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCe
Q 016857 271 NGPPTRVLLLRNMVGPGEVDDELEDEVGSECA-KYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRF 349 (381)
Q Consensus 271 ~g~pSrVVvL~NMv~~~El~dELeeDI~EECs-KYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~ 349 (381)
.+.+|.||.|.|+|.+=.| -.|+++++ +.|.|+..||..+. ..|||.|.++++|.....+|||-.
T Consensus 440 R~~~SnvlhI~nLvRPFTl-----gQLkelL~rtgg~Vee~WmDkIK---------ShCyV~yss~eEA~atr~AlhnV~ 505 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTL-----GQLKELLGRTGGNVEEFWMDKIK---------SHCYVSYSSVEEAAATREALHNVQ 505 (718)
T ss_pred CCCccceEeeecccccchH-----HHHHHHHhhccCchHHHHHHHhh---------cceeEecccHHHHHHHHHHHhccc
Confidence 4678999999999987443 24666677 78889999987653 469999999999999999999986
Q ss_pred e---CCeEEEEEeccccc--ccccccCCCCCCCC
Q 016857 350 F---GGRVVRATFYDEER--FSKNELAPLPGEIP 378 (381)
Q Consensus 350 F---~GR~V~a~fy~ee~--F~~~~l~p~~~e~~ 378 (381)
+ |++.+.|.|...+. |.++-|.=.+.|++
T Consensus 506 WP~sNPK~L~adf~~~deld~hr~~led~~ae~~ 539 (718)
T KOG2416|consen 506 WPPSNPKHLIADFVRADELDKHRNGLEDLEAELP 539 (718)
T ss_pred cCCCCCceeEeeecchhHHHHHhccchhcccccc
Confidence 6 77899999998765 44454444444443
No 96
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.76 E-value=0.03 Score=57.86 Aligned_cols=75 Identities=27% Similarity=0.344 Sum_probs=59.2
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
+.||++.|+- .+-+. .+-+.-.|+-||.|.+|.|..+.. ..+.|+|.|...|.-|+..|+|...-|+.
T Consensus 297 n~vllvsnln-~~~VT---~d~LftlFgvYGdVqRVkil~nkk--------d~ALIQmsd~~qAqLA~~hL~g~~l~gk~ 364 (492)
T KOG1190|consen 297 NVVLLVSNLN-EEAVT---PDVLFTLFGVYGDVQRVKILYNKK--------DNALIQMSDGQQAQLAMEHLEGHKLYGKK 364 (492)
T ss_pred ceEEEEecCc-hhccc---hhHHHHHHhhhcceEEEEeeecCC--------cceeeeecchhHHHHHHHHhhcceecCce
Confidence 4666666643 22222 234557789999999999998754 35999999999999999999999999999
Q ss_pred EEEEecc
Q 016857 355 VRATFYD 361 (381)
Q Consensus 355 V~a~fy~ 361 (381)
|++.|.-
T Consensus 365 lrvt~SK 371 (492)
T KOG1190|consen 365 LRVTLSK 371 (492)
T ss_pred EEEeecc
Confidence 9999874
No 97
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.56 E-value=0.066 Score=45.36 Aligned_cols=69 Identities=14% Similarity=0.276 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhccCCeeEEE-EeeeCCC--C-CCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEE-EEecc
Q 016857 292 ELEDEVGSECAKYGTVTRVL-IFEITEP--N-FPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVR-ATFYD 361 (381)
Q Consensus 292 ELeeDI~EECsKYG~V~~V~-I~~~~~~--~-~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~-a~fy~ 361 (381)
.....|.++|++||.|.+.. +.+.... . -......-|.|+|.+..+|.+|+.. ||+.|+|..+. +.+++
T Consensus 17 ~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 17 SASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp GGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEEEE-H
T ss_pred HHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEEEEcH
Confidence 35667889999999998775 1000000 0 0012446899999999999999986 99999986554 55553
No 98
>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only]
Probab=95.45 E-value=0.018 Score=59.47 Aligned_cols=44 Identities=23% Similarity=0.430 Sum_probs=35.0
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCcceeeecCC
Q 016857 213 TAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNAS 257 (381)
Q Consensus 213 ~~~~kmm~KmGwk~G~GLG~~~qGI~~Pi~~~~~~~~~Glg~~~~ 257 (381)
+||..||.-|||+.|.|+|+++|+.+ +-.-.++..+.|||++-.
T Consensus 155 ~FGlAmLrG~GWkpg~gigk~~q~v~-~~~~~~rpkglGLGa~~~ 198 (455)
T KOG4315|consen 155 GFGLAMLRGMGWKPGPGIGKNKQDVK-IKEPFLRPKGLGLGADPA 198 (455)
T ss_pred HHHHHHHhcCCCCCCCCcCcCCcccc-ccccccCCCCcccCCCcc
Confidence 89999999999999999999988753 333446667778888643
No 99
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=95.41 E-value=0.018 Score=55.36 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=62.3
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
..+.|.+.|+=-.- .+ ++|.++++-||.|.+|.|..+.-. .+..|+.||+|.+.+...+|+. |||-.+.|+
T Consensus 100 d~~sv~v~nvd~~~----t~-~~~e~hf~~Cg~i~~~ti~~d~~~---~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~ 170 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLV----TL-TKIELHFESCGGINRVTVPKDKFR---GHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP 170 (231)
T ss_pred CCceEEEecccccc----cc-chhhheeeccCCccceeeeccccC---CCcceeEEEecccHhhhHHHhh-cCCcccccc
Confidence 45667777742111 11 237788899999999999876433 2478999999999999999999 999999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.+..+-.
T Consensus 171 ~i~vt~~r~ 179 (231)
T KOG4209|consen 171 AIEVTLKRT 179 (231)
T ss_pred cceeeeeee
Confidence 999988754
No 100
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=95.28 E-value=0.05 Score=59.92 Aligned_cols=73 Identities=14% Similarity=0.301 Sum_probs=59.3
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.|++|.|..+-. .-.++||...++.||.|++|.+..+ .|++||+...-.+|.+|+..|+.-.|.++
T Consensus 420 ~SrTLwvG~i~k-----~v~e~dL~~~feefGeiqSi~li~~---------R~cAfI~M~~RqdA~kalqkl~n~kv~~k 485 (894)
T KOG0132|consen 420 CSRTLWVGGIPK-----NVTEQDLANLFEEFGEIQSIILIPP---------RGCAFIKMVRRQDAEKALQKLSNVKVADK 485 (894)
T ss_pred eeeeeeeccccc-----hhhHHHHHHHHHhcccceeEeeccC---------CceeEEEEeehhHHHHHHHHHhcccccce
Confidence 466666655321 2346788899999999999988643 58999999999999999999999999999
Q ss_pred EEEEEec
Q 016857 354 VVRATFY 360 (381)
Q Consensus 354 ~V~a~fy 360 (381)
.|++.+.
T Consensus 486 ~Iki~Wa 492 (894)
T KOG0132|consen 486 TIKIAWA 492 (894)
T ss_pred eeEEeee
Confidence 9987664
No 101
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=95.02 E-value=0.092 Score=54.86 Aligned_cols=81 Identities=22% Similarity=0.183 Sum_probs=62.3
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
-.|.|+|.|+--.-- ..+|++=|+ +|-|.|+=|.+..+... ..+|++.|+|++.|.++||+..||..-.+||
T Consensus 43 r~R~vfItNIpyd~r-WqdLKdLvr---ekvGev~yveLl~D~~G----K~rGcavVEFk~~E~~qKa~E~lnk~~~~GR 114 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYR-WQDLKDLVR---EKVGEVEYVELLFDESG----KARGCAVVEFKDPENVQKALEKLNKYEVNGR 114 (608)
T ss_pred ccceEEEecCcchhh-hHhHHHHHH---HhcCceEeeeeecccCC----CcCCceEEEeeCHHHHHHHHHHhhhccccCc
Confidence 456689999742111 244554444 48999999998876543 4689999999999999999999999999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.|.--..
T Consensus 115 ~l~vKEd~d 123 (608)
T KOG4212|consen 115 ELVVKEDHD 123 (608)
T ss_pred eEEEeccCc
Confidence 999876544
No 102
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.86 E-value=0.094 Score=48.93 Aligned_cols=66 Identities=23% Similarity=0.259 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC--CCeeCCeEEEEEecccccc
Q 016857 291 DELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD--GRFFGGRVVRATFYDEERF 365 (381)
Q Consensus 291 dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln--GR~F~GR~V~a~fy~ee~F 365 (381)
.+..+.|++.+.+|+.+..+.+.+ .-+||.|.|.+.++|.+|...|+ +..|.|..+++.|......
T Consensus 6 ~~~~~~l~~l~~~~~~~~~~~~L~---------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 6 PDNLAELEELFSTYDPPVQFSPLK---------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp ---HHHHHHHHHTT-SS-EEEEET---------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hhhHHHHHHHHHhcCCceEEEEcC---------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 456788889999999999998874 34899999999999999999999 9999999999999865444
No 103
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=94.75 E-value=0.018 Score=55.41 Aligned_cols=81 Identities=22% Similarity=0.142 Sum_probs=63.6
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+.++|++.||... +++||.+ |.+-.-|.|.+|.|+...+. ..-++||.|.++.+-.-|++.|||-...+
T Consensus 7 e~drtl~v~n~~~~--v~eelL~---ElfiqaGPV~kv~ip~~~d~-----~~kFa~v~f~~E~sv~~a~~L~ng~~l~~ 76 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSG--VSEELLS---ELFIQAGPVYKVGIPSGQDQ-----EQKFAYVFFPNENSVQLAGQLENGDDLEE 76 (267)
T ss_pred chhhHHHHHhhhhh--hhHHHHH---HHhhccCceEEEeCCCCccC-----CCceeeeecccccchhhhhhhcccchhcc
Confidence 46778888888643 3344433 44568999999999875443 34489999999999999999999999999
Q ss_pred eEEEEEecccc
Q 016857 353 RVVRATFYDEE 363 (381)
Q Consensus 353 R~V~a~fy~ee 363 (381)
+.+++.|.+..
T Consensus 77 ~e~q~~~r~G~ 87 (267)
T KOG4454|consen 77 DEEQRTLRCGN 87 (267)
T ss_pred chhhcccccCC
Confidence 99999888764
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.74 E-value=0.12 Score=53.20 Aligned_cols=81 Identities=26% Similarity=0.548 Sum_probs=59.6
Q ss_pred CCceEEEEecccCCC-CChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC-ee
Q 016857 273 PPTRVLLLRNMVGPG-EVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR-FF 350 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~-El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR-~F 350 (381)
.+.+||++. ++.+- -+.- +-|...|.-.|+|.+|.|++.+ .+.+.|+|++.+.|++|...|||- .|
T Consensus 118 ~pN~VLl~T-IlNp~YpItv---DVly~Icnp~GkVlRIvIfkkn--------gVQAmVEFdsv~~AqrAk~alNGADIY 185 (494)
T KOG1456|consen 118 TPNKVLLFT-ILNPQYPITV---DVLYTICNPQGKVLRIVIFKKN--------GVQAMVEFDSVEVAQRAKAALNGADIY 185 (494)
T ss_pred CCCeEEEEE-eecCccccch---hhhhhhcCCCCceEEEEEEecc--------ceeeEEeechhHHHHHHHhhccccccc
Confidence 356676654 33321 1111 2356889999999999999853 367999999999999999999998 44
Q ss_pred CC-eEEEEEecccccc
Q 016857 351 GG-RVVRATFYDEERF 365 (381)
Q Consensus 351 ~G-R~V~a~fy~ee~F 365 (381)
.| -+++++|.-.++.
T Consensus 186 sGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 186 SGCCTLKIEYAKPTRL 201 (494)
T ss_pred ccceeEEEEecCccee
Confidence 44 6899999876543
No 105
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=94.09 E-value=0.14 Score=49.86 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEecccccc
Q 016857 293 LEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERF 365 (381)
Q Consensus 293 LeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~ee~F 365 (381)
+.+||+|.|..||.+.++.|+.+... ...|.+=|.|..-++|.+|++.|||--.+|+.++.........
T Consensus 96 ~~~Dl~eLF~~~~~~~r~~vhy~~~G----~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~ 164 (243)
T KOG0533|consen 96 IDADLKELFAEFGELKRVAVHYDRAG----RSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQ 164 (243)
T ss_pred chHHHHHHHHHhccceEEeeccCCCC----CCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCccc
Confidence 45688899999999999999976542 3568999999999999999999999989999999888876443
No 106
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.01 E-value=0.14 Score=43.44 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=41.3
Q ss_pred EEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC-----eeC
Q 016857 277 VLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR-----FFG 351 (381)
Q Consensus 277 VVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR-----~F~ 351 (381)
||.+.++- .++ -.++|++.|++||.|.=|-+.+ +....||+|.+.++|.+|+..+.-. .+.
T Consensus 3 il~~~g~~--~~~---~re~iK~~f~~~g~V~yVD~~~---------G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~ 68 (105)
T PF08777_consen 3 ILKFSGLG--EPT---SREDIKEAFSQFGEVAYVDFSR---------GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIK 68 (105)
T ss_dssp EEEEEE----SS-----HHHHHHHT-SS--EEEEE--T---------T-SEEEEEESS---HHHHHHHHHHTTTS-B-TT
T ss_pred EEEEecCC--CCc---CHHHHHHHHHhcCCcceEEecC---------CCCEEEEEECCcchHHHHHHHHHhccCCceEEc
Confidence 56666622 222 2789999999999887665532 3357999999999999999877543 667
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
+..|++.....
T Consensus 69 ~~~~~~~vLeG 79 (105)
T PF08777_consen 69 GKEVTLEVLEG 79 (105)
T ss_dssp SSSEEEE---H
T ss_pred CceEEEEECCC
Confidence 77777777753
No 107
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=93.80 E-value=0.16 Score=38.02 Aligned_cols=43 Identities=21% Similarity=0.466 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHH
Q 016857 291 DELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKAL 342 (381)
Q Consensus 291 dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv 342 (381)
.+..++|...|..||.|.++.+.. ..-.+||+|.+..+|++|+
T Consensus 11 ~~~~~~vl~~F~~fGeI~~~~~~~---------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 11 PDLAEEVLEHFASFGEIVDIYVPE---------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred chHHHHHHHHHHhcCCEEEEEcCC---------CCcEEEEEECCHHHHHhhC
Confidence 456678889999999999998862 2356999999999999985
No 108
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=93.72 E-value=0.11 Score=53.86 Aligned_cols=73 Identities=23% Similarity=0.452 Sum_probs=54.0
Q ss_pred EEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC-eeCC-eEE
Q 016857 278 LLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR-FFGG-RVV 355 (381)
Q Consensus 278 VvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR-~F~G-R~V 355 (381)
+++.||+-+--| |=+...|++||.|.+|.-+..+. .--+.|+|.+.++|..|...|+|| .|+| .++
T Consensus 153 ~iie~m~ypVsl-----DVLHqvFS~fG~VlKIiTF~Knn-------~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtL 220 (492)
T KOG1190|consen 153 TIIENMFYPVSL-----DVLHQVFSKFGFVLKIITFTKNN-------GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTL 220 (492)
T ss_pred EEeccceeeeEH-----HHHHHHHhhcceeEEEEEEeccc-------chhhhhhccchhhHHHHHHhccCCcccCceeEE
Confidence 445676655333 34578899999999999887532 124889999999999999999999 4555 467
Q ss_pred EEEeccc
Q 016857 356 RATFYDE 362 (381)
Q Consensus 356 ~a~fy~e 362 (381)
+..|..-
T Consensus 221 rId~Skl 227 (492)
T KOG1190|consen 221 RIDFSKL 227 (492)
T ss_pred Eeehhhc
Confidence 7766543
No 109
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.44 E-value=0.1 Score=54.31 Aligned_cols=68 Identities=22% Similarity=0.332 Sum_probs=53.1
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeC---CCC--CC-----CCCceEEEEEeCCHHHHHHHHH
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEIT---EPN--FP-----VDEAVRIFVQFERSEQTTKALI 343 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~---~~~--~~-----~~~~GrVFVeF~d~esA~kAv~ 343 (381)
+||+||..|+-. |-..|.|...|+.+|.|..|.|+.+. .+. ++ ...+-+++|+|+..+.|.+|..
T Consensus 230 ~srtivaenLP~-----Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 230 PSRTIVAENLPL-----DHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred ccceEEEecCCc-----chHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 899999999762 33457888999999999999999872 221 11 1125679999999999999999
Q ss_pred hhC
Q 016857 344 DLD 346 (381)
Q Consensus 344 ~Ln 346 (381)
.||
T Consensus 305 ~~~ 307 (484)
T KOG1855|consen 305 LLN 307 (484)
T ss_pred hhc
Confidence 884
No 110
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.21 E-value=0.033 Score=56.10 Aligned_cols=86 Identities=17% Similarity=0.349 Sum_probs=59.5
Q ss_pred ChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEeccc---ccc
Q 016857 289 VDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDE---ERF 365 (381)
Q Consensus 289 l~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~e---e~F 365 (381)
+.++..-+=.+-|++||.|.+|.+..............-+||.|+..++|..|+...+|-..+||.++|.|-.. ..|
T Consensus 89 ~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttkycs~~ 168 (327)
T KOG2068|consen 89 LADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTKYCSFY 168 (327)
T ss_pred ccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCcchhHH
Confidence 33333333346778999999999987542011111223499999999999999999999999999999988764 334
Q ss_pred cccccCCCC
Q 016857 366 SKNELAPLP 374 (381)
Q Consensus 366 ~~~~l~p~~ 374 (381)
.+++.-+.+
T Consensus 169 l~~~~c~~~ 177 (327)
T KOG2068|consen 169 LRNDICQNP 177 (327)
T ss_pred hhhhcccCc
Confidence 444444433
No 111
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=92.93 E-value=1.2 Score=37.52 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=54.8
Q ss_pred EEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC----C
Q 016857 277 VLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG----G 352 (381)
Q Consensus 277 VVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~----G 352 (381)
+|.|+|+-..-. .++|.+.|-+.| .|...=++++.+-.. ....|.+||-|.+.+.|.+-.+.++|+... .
T Consensus 3 TvMirNIPn~~t-~~~L~~~l~~~~--~g~yDF~YLPiDf~~---~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~ 76 (97)
T PF04059_consen 3 TVMIRNIPNKYT-QEMLIQILDEHF--KGKYDFFYLPIDFKN---KCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSK 76 (97)
T ss_pred eEEEecCCCCCC-HHHHHHHHHHhc--cCcceEEEeeeeccC---CCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCC
Confidence 688889754422 245666776666 366666777765433 246899999999999999999999999775 2
Q ss_pred eEEEEEec
Q 016857 353 RVVRATFY 360 (381)
Q Consensus 353 R~V~a~fy 360 (381)
+...+.|.
T Consensus 77 Kvc~i~yA 84 (97)
T PF04059_consen 77 KVCEISYA 84 (97)
T ss_pred cEEEEehh
Confidence 44444444
No 112
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=92.85 E-value=0.089 Score=51.57 Aligned_cols=57 Identities=14% Similarity=0.347 Sum_probs=48.0
Q ss_pred HHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEE
Q 016857 299 SECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRAT 358 (381)
Q Consensus 299 EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~ 358 (381)
..|.||=.-..-.+.++...+ ..+|+-||-|.+..++.+|++.|||++.+.|.|.+.
T Consensus 209 raf~Kfpsf~~akviRdkRTg---KSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 209 RAFKKFPSFQKAKVIRDKRTG---KSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred HHHHhccchhhcccccccccc---ccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 455688877777777766554 678999999999999999999999999999988754
No 113
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=92.52 E-value=0.099 Score=52.53 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEE
Q 016857 291 DELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRAT 358 (381)
Q Consensus 291 dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~ 358 (381)
+.-++.+++.|++||.|..++|+++... ...+|+.||.|++.++...++..-. ..++||.|.+.
T Consensus 17 ~ttee~Lr~yf~~~Gev~d~~vm~d~~t---~rsrgFgfv~f~~~~~v~~vl~~~~-h~~dgr~ve~k 80 (311)
T KOG4205|consen 17 ETTEESLREYFSQFGEVTDCVVMRDPST---GRSRGFGFVTFATPEGVDAVLNART-HKLDGRSVEPK 80 (311)
T ss_pred cccHHHHHHHhcccCceeeEEEeccCCC---CCcccccceecCCCcchheeecccc-cccCCccccce
Confidence 3456788899999999999999987654 4688999999999987777766533 23456555443
No 114
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=91.54 E-value=0.12 Score=49.44 Aligned_cols=61 Identities=26% Similarity=0.338 Sum_probs=50.1
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEecccccc
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERF 365 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~ee~F 365 (381)
.+||.+-+++||.+....+ . .++.||+|+..++|.+|+..|+|..+.|+.|.+.+...+..
T Consensus 113 ~qdl~d~~~~~g~~~~~~~-~----------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~~d~~ 173 (216)
T KOG0106|consen 113 WQDLKDHFRPAGEVTYVDA-R----------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNSRDRS 173 (216)
T ss_pred HHHHhhhhcccCCCchhhh-h----------ccccceeehhhhhhhhcchhccchhhcCceeeecccCcchh
Confidence 4788899999999944433 1 36799999999999999999999999999999966554444
No 115
>KOG2138 consensus Predicted RNA binding protein, contains G-patch domain [RNA processing and modification]
Probab=91.41 E-value=0.11 Score=56.92 Aligned_cols=25 Identities=36% Similarity=0.728 Sum_probs=22.4
Q ss_pred CCCChhhHHHHHHHHcCCCCCCCCC
Q 016857 207 GAGGQMTAAQRMMAKMGWKEGQGLG 231 (381)
Q Consensus 207 ~~~~~~~~~~kmm~KmGwk~G~GLG 231 (381)
.+|+..++|-+||.+|||++|+|+|
T Consensus 143 v~Pvs~sIgvrlLrsMGWr~GqgIg 167 (883)
T KOG2138|consen 143 VRPVSDSIGVRLLRSMGWREGQGIG 167 (883)
T ss_pred hhhhhhhHHHHHHHHhcCccCCCcC
Confidence 3466779999999999999999999
No 116
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=90.68 E-value=0.15 Score=40.90 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=12.0
Q ss_pred CCCceEEEEecccCCCCC
Q 016857 272 GPPTRVLLLRNMVGPGEV 289 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El 289 (381)
..+|+||+|+|||++.+.
T Consensus 51 ~~aS~C~lLkNMFDP~~E 68 (73)
T PF15519_consen 51 PIASRCFLLKNMFDPAEE 68 (73)
T ss_dssp S---SEEEEESSS-TTCG
T ss_pred CCCCceeeeecCCCcccc
Confidence 469999999999999763
No 117
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=90.62 E-value=0.55 Score=51.71 Aligned_cols=82 Identities=20% Similarity=0.166 Sum_probs=60.9
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.+.-|.+-|+-.. | .++.+-..|+.||.|.+|.|+-++.+.-.....-+.||-|-+-.+|.+|++.|+|..+.++
T Consensus 173 ~TTNlyv~Nlnps--v---~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 173 QTTNLYVGNLNPS--V---DENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred cccceeeecCCcc--c---cHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 4555666674322 1 2345668889999999999997654332233455679999999999999999999999998
Q ss_pred EEEEEec
Q 016857 354 VVRATFY 360 (381)
Q Consensus 354 ~V~a~fy 360 (381)
.++..|-
T Consensus 248 e~K~gWg 254 (877)
T KOG0151|consen 248 EMKLGWG 254 (877)
T ss_pred eeeeccc
Confidence 8877665
No 118
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.20 E-value=3 Score=35.91 Aligned_cols=57 Identities=14% Similarity=0.367 Sum_probs=42.9
Q ss_pred CeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC---eEEEEEecccccccc
Q 016857 306 TVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG---RVVRATFYDEERFSK 367 (381)
Q Consensus 306 ~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G---R~V~a~fy~ee~F~~ 367 (381)
.|..+.|.++... .+--|-++|.+.++|..-...+||+.|+. -+-++-|+..-.|..
T Consensus 40 ~i~~~riird~~p-----nrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV~~Ve~~~ 99 (110)
T PF07576_consen 40 DIEHIRIIRDGTP-----NRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFVKSVEFTS 99 (110)
T ss_pred cEEEEEEeeCCCC-----ceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEEEEEEEEc
Confidence 5778888875432 35679999999999999999999999976 355666665544443
No 119
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.87 E-value=0.72 Score=46.37 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=42.5
Q ss_pred HHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEE
Q 016857 296 EVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRA 357 (381)
Q Consensus 296 DI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a 357 (381)
-|..+|++||.|.+.+-..+ .-.++|+|....+|.+|+.. ||+.|+|..+..
T Consensus 212 ~vL~~F~~cG~Vvkhv~~~n---------gNwMhirYssr~~A~KALsk-ng~ii~g~vmiG 263 (350)
T KOG4285|consen 212 IVLNLFSRCGEVVKHVTPSN---------GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIG 263 (350)
T ss_pred HHHHHHHhhCeeeeeecCCC---------CceEEEEecchhHHHHhhhh-cCeeeccceEEe
Confidence 46688999999999876521 24699999999999999976 999999986643
No 120
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=87.92 E-value=0.6 Score=47.00 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=52.5
Q ss_pred HHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEeccc
Q 016857 293 LEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDE 362 (381)
Q Consensus 293 LeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~e 362 (381)
-++|+++.+.+||.|..+.|+.+.... ...|+.||.|.+.++..+++. ..-+.|+|+.|.|.-+-.
T Consensus 110 ~e~~~r~yfe~~g~v~~~~~~~d~~~~---~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 110 TEEDFKDYFEQFGKVADVVIMYDKTTS---RPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred chHHHhhhhhccceeEeeEEeeccccc---ccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 357889999999999999999876543 568999999999887776654 466788999888876643
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=87.41 E-value=1.9 Score=47.63 Aligned_cols=77 Identities=22% Similarity=0.246 Sum_probs=60.3
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
.+||-+.||--.-+ .+||.+-|.-|-.+-.-.+.+-.+++ .-.|.+-|-|++.++|.+|+..|+|+.+..|+
T Consensus 867 p~V~~~~n~Pf~v~-----l~dI~~FF~dY~~~p~sI~~r~nd~G---~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~ 938 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVT-----LEDIVEFFNDYEPDPNSIRIRRNDDG---VPTGECMVAFESQEEARRASMDLDGQKIRNRV 938 (944)
T ss_pred CeEEEecCCCcccc-----HHHHHHHhcccccCCCceeEeecCCC---CcccceeEeecCHHHHHhhhhccccCccccee
Confidence 34888989853333 35888899988877655555555544 34789999999999999999999999999999
Q ss_pred EEEEe
Q 016857 355 VRATF 359 (381)
Q Consensus 355 V~a~f 359 (381)
|....
T Consensus 939 V~l~i 943 (944)
T KOG4307|consen 939 VSLRI 943 (944)
T ss_pred EEEEe
Confidence 98754
No 122
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=86.64 E-value=1.8 Score=44.23 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=60.3
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeE--------EEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhh
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTR--------VLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDL 345 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~--------V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~L 345 (381)
-..-|++.|+- .|+ ..+|+.+.++|+|.|.+ |.+++.... ...|...|.|-..+|..-|++.|
T Consensus 133 ~Nt~VYVsgLP--~Di---T~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G----~lKGDaLc~y~K~ESVeLA~~il 203 (382)
T KOG1548|consen 133 VNTSVYVSGLP--LDI---TVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQG----KLKGDALCCYIKRESVELAIKIL 203 (382)
T ss_pred cCceEEecCCC--Ccc---cHHHHHHHHHhcceEeccCCCCCeeEEEEecCCC----CccCceEEEeecccHHHHHHHHh
Confidence 34457777764 222 24577788999999864 677765442 45788999999999999999999
Q ss_pred CCCeeCCeEEEEEec
Q 016857 346 DGRFFGGRVVRATFY 360 (381)
Q Consensus 346 nGR~F~GR~V~a~fy 360 (381)
++--|.|+.|+|+-.
T Consensus 204 De~~~rg~~~rVerA 218 (382)
T KOG1548|consen 204 DEDELRGKKLRVERA 218 (382)
T ss_pred CcccccCcEEEEehh
Confidence 999999999998865
No 123
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=86.55 E-value=1.3 Score=46.26 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=53.1
Q ss_pred EEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEE
Q 016857 278 LLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRA 357 (381)
Q Consensus 278 VvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a 357 (381)
|.++|+-... ...+|+++|.+||.|+...|......+ ....+.||+|.+..++..|+.+- =-..+||.+.+
T Consensus 291 i~V~nlP~da-----~~~~l~~~Fk~FG~Ik~~~I~vr~~~~---~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~V 361 (419)
T KOG0116|consen 291 IFVKNLPPDA-----TPAELEEVFKQFGPIKEGGIQVRSPGG---KNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNV 361 (419)
T ss_pred eEeecCCCCC-----CHHHHHHHHhhcccccccceEEeccCC---CcCceEEEEEeecchhhhhhhcC-ccccCCeeEEE
Confidence 7788864222 233478999999999999998865322 22388999999999999999886 44557787766
Q ss_pred E
Q 016857 358 T 358 (381)
Q Consensus 358 ~ 358 (381)
+
T Consensus 362 e 362 (419)
T KOG0116|consen 362 E 362 (419)
T ss_pred E
Confidence 4
No 124
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=86.36 E-value=2.5 Score=33.29 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=40.6
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEE
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVR 356 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~ 356 (381)
.+||+--+.+|+-. +|..++ .| .||.|.+..+|.+|.+..||+.|.+..+.
T Consensus 14 v~d~K~~Lr~y~~~-~I~~d~----------tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 14 VEDFKKRLRKYRWD-RIRDDR----------TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred HHHHHHHHhcCCcc-eEEecC----------CE-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 46788888888753 555432 24 89999999999999999999998877664
No 125
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=85.32 E-value=0.77 Score=46.79 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=46.0
Q ss_pred EEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEeccc---cccccccc
Q 016857 309 RVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDE---ERFSKNEL 370 (381)
Q Consensus 309 ~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~e---e~F~~~~l 370 (381)
.|+|+.+.+. ...++.+-|.|+|...|+.|+..++++-|.|.+|++.++.. -.|.++.+
T Consensus 103 ki~~y~dkeT---~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~~ve~~rg~~ 164 (351)
T KOG1995|consen 103 KIKIYTDKET---GAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRTGVESVRGGY 164 (351)
T ss_pred chhccccccc---cCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhccCcccccccc
Confidence 3555554432 35789999999999999999999999999999999888864 24555544
No 126
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=84.89 E-value=0.6 Score=45.87 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=56.4
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCC---------CCCCCCceEEEEEeCCHHHHHHHHHhh
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEP---------NFPVDEAVRIFVQFERSEQTTKALIDL 345 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~---------~~~~~~~GrVFVeF~d~esA~kAv~~L 345 (381)
+=||+|.|+--..+.. -+++.++.||.|-+|++-..... +......-..+|+|.+-..|.++...|
T Consensus 74 ~GVvylS~IPp~m~~~-----rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~L 148 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPV-----RLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELL 148 (278)
T ss_pred ceEEEeccCCCccCHH-----HHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 4588888876544432 46677889999999999765433 111222334689999999999999999
Q ss_pred CCCeeCCeEE
Q 016857 346 DGRFFGGRVV 355 (381)
Q Consensus 346 nGR~F~GR~V 355 (381)
||..++|+.-
T Consensus 149 nn~~Iggkk~ 158 (278)
T KOG3152|consen 149 NNTPIGGKKK 158 (278)
T ss_pred CCCccCCCCC
Confidence 9999999864
No 127
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=82.01 E-value=7.4 Score=38.01 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=50.6
Q ss_pred HHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC---CeEEEEEeccc-ccccccccC
Q 016857 296 EVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG---GRVVRATFYDE-ERFSKNELA 371 (381)
Q Consensus 296 DI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~---GR~V~a~fy~e-e~F~~~~l~ 371 (381)
||.-.|..|-.-+...|-.-...+ ..-..+.||.|.+..+|..|++.|||-.|+ +.+++.++.-- .+-.+....
T Consensus 50 EiynLFR~f~GYEgslLK~Tsk~~--~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~s 127 (284)
T KOG1457|consen 50 EIYNLFRRFHGYEGSLLKYTSKGD--QVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGS 127 (284)
T ss_pred HHHHHhccCCCccceeeeeccCCC--ccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCC
Confidence 444555554444555553321111 123467999999999999999999999996 57888888743 444455555
Q ss_pred CCCC
Q 016857 372 PLPG 375 (381)
Q Consensus 372 p~~~ 375 (381)
+.|+
T Consensus 128 gtP~ 131 (284)
T KOG1457|consen 128 GTPG 131 (284)
T ss_pred CCCC
Confidence 5544
No 128
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=82.00 E-value=4.3 Score=39.12 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=52.8
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+..|+++.|+- .|...++.+++.+-|.-|..| ..... -.+.+||+|.+...|..|...|.|-..-
T Consensus 143 ~ppn~ilf~~niP--~es~~e~l~~lf~qf~g~kei---r~i~~--------~~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 143 APPNNILFLTNIP--SESESEMLSDLFEQFPGFKEI---RLIPP--------RSGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred CCCceEEEEecCC--cchhHHHHHHHHhhCccccee---EeccC--------CCceeEEecchhhhhHHHhhhhccceec
Confidence 3467778887765 344456666666555555444 33322 2378999999999999999999987665
Q ss_pred -CeEEEEEec
Q 016857 352 -GRVVRATFY 360 (381)
Q Consensus 352 -GR~V~a~fy 360 (381)
..++++.|.
T Consensus 210 ~~~~m~i~~a 219 (221)
T KOG4206|consen 210 KKNTMQITFA 219 (221)
T ss_pred cCceEEeccc
Confidence 677777765
No 129
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=81.38 E-value=1 Score=44.76 Aligned_cols=75 Identities=24% Similarity=0.261 Sum_probs=60.0
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEecccccccccccCC
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEERFSKNELAP 372 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~ee~F~~~~l~p 372 (381)
++||++++..+|.|.+|.++.....+ ...|+.||.|....++.+|+.. +.+..+|+.+...+-.......+.+.+
T Consensus 199 ~d~~~~~~~~~~~i~~~r~~~~~~s~---~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (285)
T KOG4210|consen 199 RDDLKEHFVSSGEITSVRLPTDEESG---DSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKSDGGLFG 273 (285)
T ss_pred hHHHhhhccCcCcceeeccCCCCCcc---chhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccccccccc
Confidence 35666888999999999998765543 4678999999999999999999 999999999988887666555444443
No 130
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=81.22 E-value=6.6 Score=40.84 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=57.8
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+..|+.+-. ++...+. .+-|...+..||.|++|..++-. .|.+.|+..|...-++|+..||+-..-|
T Consensus 285 ~~g~VmMVyG-Ldh~k~N---~drlFNl~ClYGNV~rvkFmkTk--------~gtamVemgd~~aver~v~hLnn~~lfG 352 (494)
T KOG1456|consen 285 APGCVMMVYG-LDHGKMN---CDRLFNLFCLYGNVERVKFMKTK--------PGTAMVEMGDAYAVERAVTHLNNIPLFG 352 (494)
T ss_pred CCCcEEEEEe-ccccccc---hhhhhhhhhhcCceeeEEEeecc--------cceeEEEcCcHHHHHHHHHHhccCcccc
Confidence 3556665544 2222221 23455667899999999998743 3789999999999999999999998888
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
..|.+.+...
T Consensus 353 ~kl~v~~SkQ 362 (494)
T KOG1456|consen 353 GKLNVCVSKQ 362 (494)
T ss_pred ceEEEeeccc
Confidence 8888877643
No 131
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=78.15 E-value=3.4 Score=40.28 Aligned_cols=65 Identities=25% Similarity=0.293 Sum_probs=48.0
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
...+|++.|+-.. - -+++++..++.|-....+.|... .+...+|++|++.+.|..|++.|.|-.+
T Consensus 209 acstlfianl~~~-~----~ed~l~~~~~~~~gf~~l~~~~~-------~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPN-C----TEDELKQLLSRYPGFHILKIRAR-------GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCC-C----CHHHHHHHHHhCCCceEEEEecC-------CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 4456777775322 1 25577788899998888888642 2346799999999999999999998654
No 132
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=77.69 E-value=4.2 Score=42.40 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=55.6
Q ss_pred eEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEE
Q 016857 276 RVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVV 355 (381)
Q Consensus 276 rVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V 355 (381)
.||.+.|+-.. --.+.|.-.|+..|+|..+.++.+..+-.-+...-.|||+|.|..++.-|...-| .+|=++.+
T Consensus 8 ~vIqvanisps-----at~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtn-tvfvdral 81 (479)
T KOG4676|consen 8 GVIQVANISPS-----ATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTN-TVFVDRAL 81 (479)
T ss_pred ceeeecccCch-----hhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhcc-ceeeeeeE
Confidence 38888885432 1345677888999999999988643322122345679999999998887765544 66667766
Q ss_pred EEEeccc
Q 016857 356 RATFYDE 362 (381)
Q Consensus 356 ~a~fy~e 362 (381)
.|.-|..
T Consensus 82 iv~p~~~ 88 (479)
T KOG4676|consen 82 IVRPYGD 88 (479)
T ss_pred EEEecCC
Confidence 6666643
No 133
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=76.58 E-value=6.7 Score=42.53 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=53.0
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHh--ccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC--
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECA--KYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR-- 348 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECs--KYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR-- 348 (381)
..-|||+|.--+... --+|+|+..|. .+=++++|....+. .-||.|++..+|..|.+.|.-+
T Consensus 172 ~~kRcIvilREIpet----tp~e~Vk~lf~~encPk~iscefa~N~----------nWyITfesd~DAQqAykylreevk 237 (684)
T KOG2591|consen 172 NHKRCIVILREIPET----TPIEVVKALFKGENCPKVISCEFAHND----------NWYITFESDTDAQQAYKYLREEVK 237 (684)
T ss_pred CcceeEEEEeecCCC----ChHHHHHHHhccCCCCCceeeeeeecC----------ceEEEeecchhHHHHHHHHHHHHH
Confidence 345566655433221 13456777775 57788888876432 3899999999999999999655
Q ss_pred eeCCeEEEEEeccc
Q 016857 349 FFGGRVVRATFYDE 362 (381)
Q Consensus 349 ~F~GR~V~a~fy~e 362 (381)
.|-|+.|.|..=..
T Consensus 238 ~fqgKpImARIKai 251 (684)
T KOG2591|consen 238 TFQGKPIMARIKAI 251 (684)
T ss_pred hhcCcchhhhhhhh
Confidence 68898888776554
No 134
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=73.43 E-value=1.7 Score=42.19 Aligned_cols=44 Identities=30% Similarity=0.592 Sum_probs=39.5
Q ss_pred hHHHHHHHHcCCCCCCCCCCCCCCcccccccccccCcceeeecC
Q 016857 213 TAAQRMMAKMGWKEGQGLGRQEQGITTPLMARKTDRRAGVIVNA 256 (381)
Q Consensus 213 ~~~~kmm~KmGwk~G~GLG~~~qGI~~Pi~~~~~~~~~Glg~~~ 256 (381)
-++.+||.-|||++|.-||.++.-|-+|+++-.+..+.|+++..
T Consensus 39 r~e~k~~~n~~~~e~r~l~~~e~~~ee~~~~la~~~~~~i~~e~ 82 (268)
T KOG1994|consen 39 RREYKMMENMGYKEGRTLGSNESALEEPIKVLANTKRRGIRAEK 82 (268)
T ss_pred hhHHHHHHhcCCCCCCccchhhhhhcchHHHhhhhccccccccC
Confidence 46679999999999999999999999999998888888888753
No 135
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=71.30 E-value=4 Score=43.68 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=56.7
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEecccc
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDEE 363 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~ee 363 (381)
++.+.|...-||.+....++.+...+ .++|++|++|.+.--...|+..|||...++..++|...-..
T Consensus 303 ~~q~~Ell~~fg~lk~f~lv~d~~~g---~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 303 EDQVKELLDSFGPLKAFRLVKDSATG---NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred HHHHHHHHHhcccchhheeecccccc---cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 46677777889999988888776543 47899999999999999999999999999999888877553
No 136
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=59.68 E-value=19 Score=37.66 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=55.0
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCC---eeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGT---VTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~---V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
...||.|+.+--... .|||..-++-|-. -..|.+..+... .-.|.+||+|.+.++|..|...-+..+.
T Consensus 279 ~kdcvRLRGLPy~At-----vEdIL~FlgdFa~~i~f~gVHmv~N~qG----rPSGeAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEAT-----VEDILDFLGDFATDIRFQGVHMVLNGQG----RPSGEAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred CCCeeEecCCChhhh-----HHHHHHHHHHHhhhcccceeEEEEcCCC----CcChhhhhhhhhhHHHHHHHHHHHHhhc
Confidence 366888888653222 2333333333322 222344433322 3468999999999999999998888877
Q ss_pred CCeEEEEEeccccccc
Q 016857 351 GGRVVRATFYDEERFS 366 (381)
Q Consensus 351 ~GR~V~a~fy~ee~F~ 366 (381)
.+|.|.+.-++.+..+
T Consensus 350 k~RYiEvfp~S~eeln 365 (508)
T KOG1365|consen 350 KSRYIEVFPCSVEELN 365 (508)
T ss_pred ccceEEEeeccHHHHH
Confidence 7899988888877665
No 137
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=58.43 E-value=15 Score=39.36 Aligned_cols=84 Identities=20% Similarity=0.146 Sum_probs=55.8
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeE-EEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTR-VLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~-V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..-||.|+.+--.- -++||.+-|+-.=.|.. |+++.... ....|.+||+|++.+.|++|+.-- -+.++-
T Consensus 102 ~d~vVRLRGLPfsc-----te~dI~~FFaGL~Iv~~gi~l~~d~r----gR~tGEAfVqF~sqe~ae~Al~rh-re~iGh 171 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSC-----TEEDIVEFFAGLEIVPDGILLPMDQR----GRPTGEAFVQFESQESAEIALGRH-RENIGH 171 (510)
T ss_pred CCceEEecCCCccC-----cHHHHHHHhcCCcccccceeeeccCC----CCcccceEEEecCHHHHHHHHHHH-HHhhcc
Confidence 45688888864221 24678888886666665 44443322 236799999999999999998763 345677
Q ss_pred eEEEEEecccccccc
Q 016857 353 RVVRATFYDEERFSK 367 (381)
Q Consensus 353 R~V~a~fy~ee~F~~ 367 (381)
|-|.+.-.+...+..
T Consensus 172 RYIEvF~Ss~~e~~~ 186 (510)
T KOG4211|consen 172 RYIEVFRSSRAEVKR 186 (510)
T ss_pred ceEEeehhHHHHHHh
Confidence 777776665544433
No 138
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=55.67 E-value=24 Score=37.79 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=48.4
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
...+|.|+.+- ..--++||.+-|+-+ .|+++.|.+.+- ...|.+||+|++.+++.+|++. |-...+.|
T Consensus 9 ~~~~vr~rGLP-----wsat~~ei~~Ff~~~-~I~~~~~~r~~G-----r~sGeA~Ve~~seedv~~Alkk-dR~~mg~R 76 (510)
T KOG4211|consen 9 TAFEVRLRGLP-----WSATEKEILDFFSNC-GIENLEIPRRNG-----RPSGEAYVEFTSEEDVEKALKK-DRESMGHR 76 (510)
T ss_pred cceEEEecCCC-----ccccHHHHHHHHhcC-ceeEEEEeccCC-----CcCcceEEEeechHHHHHHHHh-hHHHhCCc
Confidence 34567777653 122356777777765 477788876422 3468999999999999999874 22233445
Q ss_pred EEEEEec
Q 016857 354 VVRATFY 360 (381)
Q Consensus 354 ~V~a~fy 360 (381)
-|.|.-.
T Consensus 77 YIEVf~~ 83 (510)
T KOG4211|consen 77 YIEVFTA 83 (510)
T ss_pred eEEEEcc
Confidence 5655444
No 139
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=55.65 E-value=34 Score=36.47 Aligned_cols=82 Identities=11% Similarity=0.197 Sum_probs=55.4
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHh-ccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECA-KYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECs-KYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
++..|+|.-+-.-.... |+-.-|. -.-.|.+|.|.++.. ...--|.|+|.+.++|..=...+||+.|+-
T Consensus 73 ~~~mLcilaVP~~mt~~-----Dll~F~~~~~~~I~~irivRd~~-----pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSH-----DLLRFCASFIKQISDIRIVRDGM-----PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHH-----HHHHHHHHHhhhhheeEEeecCC-----CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 36777776544333322 3334444 344688999998543 345679999999999999999999999976
Q ss_pred ---eEEEEEecccccc
Q 016857 353 ---RVVRATFYDEERF 365 (381)
Q Consensus 353 ---R~V~a~fy~ee~F 365 (381)
-.-++-|++.-.|
T Consensus 143 le~e~Chll~V~~ve~ 158 (493)
T KOG0804|consen 143 LEPEVCHLLYVDRVEV 158 (493)
T ss_pred CCccceeEEEEEEEEE
Confidence 3555556554333
No 140
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=55.30 E-value=8.7 Score=43.51 Aligned_cols=81 Identities=21% Similarity=0.328 Sum_probs=59.2
Q ss_pred CceEEEEecccCCCC---Chh----hHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC
Q 016857 274 PTRVLLLRNMVGPGE---VDD----ELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD 346 (381)
Q Consensus 274 pSrVVvL~NMv~~~E---l~d----ELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln 346 (381)
||..+-+.|++-..- +.. ---.-|.-.|++||.|.+.+-.++- --+.|+|..+++|..|.++|+
T Consensus 285 ptn~isisnv~plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~---------N~alvs~~s~~sai~a~dAl~ 355 (1007)
T KOG4574|consen 285 PTNTISISNVFPLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL---------NMALVSFSSVESAILALDALQ 355 (1007)
T ss_pred ccCcceecccccCcchhhhhcccccchHHHHHHHHHhhcchhhheecccc---------cchhhhhHHHHHHHHhhhhhc
Confidence 566677777764321 111 1224567889999999999987642 237899999999999999999
Q ss_pred CCee--CCeEEEEEecccc
Q 016857 347 GRFF--GGRVVRATFYDEE 363 (381)
Q Consensus 347 GR~F--~GR~V~a~fy~ee 363 (381)
|+-. .|-..++.|....
T Consensus 356 gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 356 GKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred CCcccccCCceeEEecccc
Confidence 9943 6777888887753
No 141
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=49.10 E-value=17 Score=34.27 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=43.4
Q ss_pred HHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe-EEEEEeccc
Q 016857 295 DEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR-VVRATFYDE 362 (381)
Q Consensus 295 eDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR-~V~a~fy~e 362 (381)
.+...+|..|-.+.-..+.+ +.++|-|-|.+.+.|.+|...++++-|.|. .+++.|.+.
T Consensus 30 ~~~~~lFrq~n~~~~fq~lr---------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 30 ALFENLFRQINEDATFQLLR---------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred HHHHhHHhhhCcchHHHHHH---------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 34445555665554444433 458899999999999999999999999998 666666554
No 142
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=41.86 E-value=57 Score=30.99 Aligned_cols=52 Identities=15% Similarity=0.067 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC
Q 016857 291 DELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD 346 (381)
Q Consensus 291 dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln 346 (381)
|+..+||.+-.+ |.+.+|..-+-.+. +..-.|.|||.|.+.++|..|+..-.
T Consensus 120 d~ql~~l~qw~~--~k~~nv~mr~~~~k--~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 120 DDQLDDLNQWAS--GKGHNVKMRRHGNK--AHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred HHHHHHHHHHhc--ccceEeeccccCCC--CCCCCCceEEEeecHHHHHhhhhhhh
Confidence 566677777777 89999987653222 13457999999999999999887643
No 143
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=41.58 E-value=52 Score=30.33 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=29.2
Q ss_pred CCCceEEEEEeCCHHHHHHHHHhhCCCeeCC-----eEEEEEecccccc
Q 016857 322 VDEAVRIFVQFERSEQTTKALIDLDGRFFGG-----RVVRATFYDEERF 365 (381)
Q Consensus 322 ~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G-----R~V~a~fy~ee~F 365 (381)
.....|+||.|.+.++...=...++|..|-. ..-.++|.+-.++
T Consensus 52 ~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 52 PPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEFAPYQKV 100 (176)
T ss_dssp TS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE-SS---
T ss_pred CCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEEcchhcc
Confidence 3457899999999999999999999988832 2344555544333
No 144
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.33 E-value=71 Score=36.45 Aligned_cols=10 Identities=30% Similarity=0.677 Sum_probs=4.9
Q ss_pred EEEEEeCCHH
Q 016857 327 RIFVQFERSE 336 (381)
Q Consensus 327 rVFVeF~d~e 336 (381)
..|=+|.+.+
T Consensus 642 ~~~~e~~~~e 651 (1118)
T KOG1029|consen 642 DAFGEFKKTE 651 (1118)
T ss_pred hhhcccccHH
Confidence 3445555544
No 145
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=37.69 E-value=28 Score=39.85 Aligned_cols=58 Identities=19% Similarity=0.358 Sum_probs=49.5
Q ss_pred HHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC--eEEEEEeccc
Q 016857 296 EVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG--RVVRATFYDE 362 (381)
Q Consensus 296 DI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G--R~V~a~fy~e 362 (381)
-+..+|..||.|..|.+. ++...+||.|++...|+.|+..|-|--|+| +.+.+.|..+
T Consensus 471 ~l~r~fd~fGpir~Idy~---------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 471 RLNREFDRFGPIRIIDYR---------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred HHHHHhhccCcceeeecc---------cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 345788999999998763 456789999999999999999999999988 6788888865
No 146
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=34.75 E-value=37 Score=33.70 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=48.8
Q ss_pred eEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 276 RVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 276 rVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..|.+.|+-.-- .. |.+.++++.||.|.+-+|+.+... ...+.-+|+|...-.|.+|...++-+-|.+
T Consensus 32 a~l~V~nl~~~~--sn---dll~~~f~~fg~~e~av~~vD~r~----k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 32 AELYVVNLMQGA--SN---DLLEQAFRRFGPIERAVAKVDDRG----KPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred ceEEEEecchhh--hh---HHHHHhhhhcCccchheeeecccc----cccccchhhhhcchhHHHHHHHhccCcccc
Confidence 556666643221 11 234578889999999888875442 456788999999999999999997776655
No 147
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=31.04 E-value=80 Score=31.99 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=56.9
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCC----CCCCCceEEEEEeCCHHHHHHHHHhhCCC-
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPN----FPVDEAVRIFVQFERSEQTTKALIDLDGR- 348 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~----~~~~~~GrVFVeF~d~esA~kAv~~LnGR- 348 (381)
.||-|++.|+-..-+|. +.-..+-+||.|++|+++...... ..+....-|.+-|-+.+.+..=.+.+=.|
T Consensus 14 rTRSLLfeNv~~sidLh-----~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrL 88 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLH-----SFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRL 88 (309)
T ss_pred eeHHHHHhhccccccHH-----HHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHH
Confidence 68889999977443432 444677899999999999876211 11234567999999998887766555444
Q ss_pred -----eeCCeEEEEEeccc
Q 016857 349 -----FFGGRVVRATFYDE 362 (381)
Q Consensus 349 -----~F~GR~V~a~fy~e 362 (381)
......+...|++.
T Consensus 89 sEfK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 89 SEFKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHHHhcCCcceeEEEEEE
Confidence 23455677777754
No 148
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=30.37 E-value=1.5e+02 Score=26.61 Aligned_cols=47 Identities=9% Similarity=0.031 Sum_probs=34.1
Q ss_pred hHHHHHHHHHh--ccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCC
Q 016857 292 ELEDEVGSECA--KYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDG 347 (381)
Q Consensus 292 ELeeDI~EECs--KYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnG 347 (381)
.+.+.|...+. +.. |.+|+++.. ..|+|||+....++++.+++.+.|
T Consensus 20 ~V~~~L~~~~~~~~~~-i~~i~vp~~--------fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 20 NVALMLAMRAKKENLP-IYAILAPPE--------LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred HHHHHHHHHHHhCCCc-EEEEEccCC--------CCcEEEEEEEChHHHHHHHhcCCC
Confidence 34444544443 444 778887642 469999999989999999999976
No 149
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=30.20 E-value=1e+02 Score=23.99 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=30.3
Q ss_pred hHHHHHHHHHh-ccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEe
Q 016857 292 ELEDEVGSECA-KYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATF 359 (381)
Q Consensus 292 ELeeDI~EECs-KYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~f 359 (381)
+|..-|.++++ .--.|-+|.|... +.||+-... .|.+++..|++..+.|+.|.++.
T Consensus 17 ~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 17 DIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp HHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred HHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 44444444444 3334788888742 356665544 68899999999999999998864
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=30.11 E-value=21 Score=40.54 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=52.9
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEeccc
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDE 362 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~e 362 (381)
.++++..|.++|.|.++.+...... ..+|.+||.|.+..+|.+|+...++..+.-+.+.+..-+.
T Consensus 750 ~e~~k~l~~~~gn~~~~~~vt~r~g----kpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 750 KEELKSLASKTGNVTSLRLVTVRAG----KPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hHHHHhhccccCCccccchhhhhcc----ccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4677899999999999876654322 3579999999999999999999999988888777776544
No 151
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=29.40 E-value=38 Score=36.26 Aligned_cols=59 Identities=12% Similarity=0.296 Sum_probs=46.5
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEeccc
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFYDE 362 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy~e 362 (381)
..++...|.+||.|..|.|.... -.+.|.|.+-.+|-+|.. .+|-.|++|-|++.+...
T Consensus 387 ~a~ln~hfA~fG~i~n~qv~~~~---------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 387 IADLNPHFAQFGEIENIQVDYSS---------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred HhhhhhhhhhcCccccccccCch---------hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 45777899999999999997542 346788988888866654 478889999999888765
No 152
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=28.84 E-value=14 Score=42.14 Aligned_cols=78 Identities=24% Similarity=0.259 Sum_probs=58.6
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.+++|.|.||=... -+.+|+..|.+||.|.+|-|...... .+.-++||.|.+...+-+|...+.|..+..-
T Consensus 371 atrTLf~Gnl~~kl-----~eseiR~af~e~gkve~VDiKtP~~~----~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g 441 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKL-----TESEIRPAFDESGKVEEVDIKTPHIK----TESAYAFVSLLNTDMTPSAKFEESGPLIGNG 441 (975)
T ss_pred hhhhhhhcCcccch-----hhhhhhhhhhhhccccccccccCCCC----cccchhhhhhhccccCcccchhhcCCccccC
Confidence 45555555542111 13588899999999999999876432 4567899999999999999999999988766
Q ss_pred EEEEEec
Q 016857 354 VVRATFY 360 (381)
Q Consensus 354 ~V~a~fy 360 (381)
.+++.|-
T Consensus 442 ~~r~glG 448 (975)
T KOG0112|consen 442 THRIGLG 448 (975)
T ss_pred ccccccc
Confidence 6666554
No 153
>PF14268 YoaP: YoaP-like
Probab=28.50 E-value=40 Score=24.67 Aligned_cols=39 Identities=18% Similarity=0.474 Sum_probs=30.0
Q ss_pred EEEeCCHHHHHHHHHhhCC--CeeCCeEEEEEecccccccc
Q 016857 329 FVQFERSEQTTKALIDLDG--RFFGGRVVRATFYDEERFSK 367 (381)
Q Consensus 329 FVeF~d~esA~kAv~~LnG--R~F~GR~V~a~fy~ee~F~~ 367 (381)
.|+.++.|+|+.|---++. -+|+|+-|..+..++.+|++
T Consensus 4 ~i~i~t~e~Aq~~P~pft~yalFYnGkfiT~eils~~kf~K 44 (44)
T PF14268_consen 4 LIKIDTLEKAQNAPCPFTTYALFYNGKFITNEILSEKKFEK 44 (44)
T ss_pred EEEeccHHHHhcCCCceeEEEEEECCEEEEeeccChhhhcC
Confidence 5677888888876555543 47899999999999888864
No 154
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=27.79 E-value=11 Score=42.63 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=44.3
Q ss_pred HHHHHHHhccCCeeEEEEe--eeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEE
Q 016857 295 DEVGSECAKYGTVTRVLIF--EITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRA 357 (381)
Q Consensus 295 eDI~EECsKYG~V~~V~I~--~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a 357 (381)
+|+...+..||.+..|.|. .+. ..-.|.+|+.|...++|.+||...++.+|+...|.+
T Consensus 682 ~dl~~~~~~~~~~e~vqi~~h~n~-----~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 682 EDLSERFSPSGTIEVVQIVIHKNE-----KRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred chhhhhcCccchhhhHHHHHHhhc-----cccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 6888899988887766554 322 245699999999999999999888888777554433
No 155
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=26.23 E-value=1.8e+02 Score=22.74 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=28.7
Q ss_pred HHHHHHHHhcc----CCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhh
Q 016857 294 EDEVGSECAKY----GTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDL 345 (381)
Q Consensus 294 eeDI~EECsKY----G~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~L 345 (381)
-+||+.-+..| +. .+|.=..+ ..+-|.|.+.+.|.+|+..|
T Consensus 18 T~dI~~y~~~y~~~~~~-~~IEWIdD----------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 18 TDDIKAYFSEYFDEEGP-FRIEWIDD----------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred HHHHHHHHHHhcccCCC-ceEEEecC----------CcEEEEECCHHHHHHHHHcC
Confidence 35777777777 43 34443322 23789999999999999875
No 156
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=25.37 E-value=68 Score=36.14 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=60.4
Q ss_pred CCCCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeE-EEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC
Q 016857 270 FNGPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTR-VLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR 348 (381)
Q Consensus 270 ~~g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~-V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR 348 (381)
+.+...-||.|..+--..+ +.+|-..+.+--.|++ |+|-.-.. ....+.+||.|...+++.+|...-+..
T Consensus 429 ~P~~ag~~lyv~~lP~~t~-----~~~~v~~f~~~~~Ved~I~lt~~P~----~~~~~~afv~F~~~~a~~~a~~~~~k~ 499 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTP-----IVPPVNKFMGAAAVEDFIELTRLPT----DLLRPAAFVAFIHPTAPLTASSVKTKF 499 (944)
T ss_pred CCCCccceEEeccCCcccc-----ccchhhhhhhhhhhhheeEeccCCc----ccccchhhheeccccccchhhhccccc
Confidence 4455677888877542222 1245566676667777 66654322 235678999999999999999999988
Q ss_pred eeCCeEEEEEeccccc
Q 016857 349 FFGGRVVRATFYDEER 364 (381)
Q Consensus 349 ~F~GR~V~a~fy~ee~ 364 (381)
+.+.|.|++.-..+..
T Consensus 500 y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 500 YPGHRIIRVDSIADYA 515 (944)
T ss_pred ccCceEEEeechhhHH
Confidence 8888999998776543
No 157
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=24.81 E-value=1.9e+02 Score=24.94 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=60.0
Q ss_pred CCCceEEEEecccCCC--CChh--hHHHHHHHHHhccCC-eeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC
Q 016857 272 GPPTRVLLLRNMVGPG--EVDD--ELEDEVGSECAKYGT-VTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD 346 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~--El~d--ELeeDI~EECsKYG~-V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln 346 (381)
+++.++|+|.|.-+.+ -|.+ +=.++++.+++++|. |..++.-.- +.-..+.++-.|..-+.++...|.
T Consensus 6 ~~m~~yvvL~n~Td~Gaktlke~p~R~~av~~~les~G~k~~~~y~T~G-------eYD~V~i~EapDda~~~~~~l~l~ 78 (104)
T COG4274 6 EPMMTYVVLSNFTDQGAKTLKETPKRAAAVRALLESMGGKVKEQYWTLG-------EYDVVAIVEAPDDAVATRFSLALA 78 (104)
T ss_pred cchhhhhhhhhccHhHHHHHhhCHHHHHHHHHHHHHcCcEEEEEEEeec-------cccEEEEEecCCHHHHHHHHHHHH
Confidence 4577889999977654 2332 445789999999986 666665431 122567888888888888888887
Q ss_pred CCeeCCeEEEEEeccccccc
Q 016857 347 GRFFGGRVVRATFYDEERFS 366 (381)
Q Consensus 347 GR~F~GR~V~a~fy~ee~F~ 366 (381)
-+- +=|++.-.=|+.+.|.
T Consensus 79 s~G-nvRt~TL~Afp~~~~~ 97 (104)
T COG4274 79 SRG-NVRTVTLRAFPVDAML 97 (104)
T ss_pred hcC-CeEEEeeccCCHHHHH
Confidence 664 4566666666665553
No 158
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=23.23 E-value=63 Score=33.20 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=24.0
Q ss_pred eEEEEec---ccCCCCChhhHHHHHHHHHhccCCe
Q 016857 276 RVLLLRN---MVGPGEVDDELEDEVGSECAKYGTV 307 (381)
Q Consensus 276 rVVvL~N---Mv~~~El~dELeeDI~EECsKYG~V 307 (381)
++|++.| |++..|+.+..+.||++..++||.=
T Consensus 130 ~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 130 YIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred EEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 4666667 5555566677889999999999974
No 159
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=22.99 E-value=1.9e+02 Score=24.31 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=36.6
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCC
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDG 347 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnG 347 (381)
..||.+.|+-||.|.=-+|.. .-+||...+.+.|..+++.++-
T Consensus 22 ~~DI~qlFspfG~I~VsWi~d-----------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 22 TSDIYQLFSPFGQIYVSWIND-----------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp HHHHHHHCCCCCCEEEEEECT-----------TEEEEEECCCHHHHHHHHHHTT
T ss_pred hhhHHHHhccCCcEEEEEEcC-----------CcEEEEeecHHHHHHHHHHhcc
Confidence 468889999999998778752 4599999999999999999973
No 160
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.13 E-value=1.3e+02 Score=24.17 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=25.2
Q ss_pred CeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC
Q 016857 306 TVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR 348 (381)
Q Consensus 306 ~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR 348 (381)
.|.+|+.+. +..|+||||=.+..+..+|++.+.+-
T Consensus 33 ~I~Si~~~~--------~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPD--------SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-T--------TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeC--------CCceEEEEEeCCHHHHHHHHhcccce
Confidence 567777652 46799999999999999999998763
Done!