Query 016857
Match_columns 381
No_of_seqs 328 out of 1735
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 04:56:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016857.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016857hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ue2_A Poly(U)-binding-splicin 99.9 3E-25 1E-29 188.7 9.6 99 273-371 18-117 (118)
2 3v4m_A Splicing factor U2AF 65 99.9 1.8E-24 6E-29 179.7 10.1 99 271-370 1-104 (105)
3 2pe8_A Splicing factor 45; RRM 99.9 1E-23 3.4E-28 175.3 11.7 102 270-373 3-104 (105)
4 3s6e_A RNA-binding protein 39; 99.9 2.1E-22 7.1E-27 170.4 8.4 89 273-368 5-98 (114)
5 3dxb_A Thioredoxin N-terminall 99.8 4.5E-19 1.6E-23 162.0 9.8 100 272-371 121-221 (222)
6 1jmt_A Splicing factor U2AF 35 99.7 3E-17 1E-21 135.7 10.2 83 275-361 1-104 (104)
7 2dit_A HIV TAT specific factor 99.7 1.7E-16 5.9E-21 131.4 9.7 91 272-369 12-109 (112)
8 3s8s_A Histone-lysine N-methyl 99.2 5.3E-11 1.8E-15 98.8 11.8 82 273-362 4-85 (110)
9 3ns6_A Eukaryotic translation 99.2 1.9E-11 6.6E-16 98.9 8.1 90 274-366 5-97 (100)
10 2x1f_A MRNA 3'-END-processing 99.2 9.4E-11 3.2E-15 93.3 10.8 83 274-364 1-83 (96)
11 2nlw_A Eukaryotic translation 99.2 7.8E-11 2.7E-15 96.0 10.1 90 272-366 12-104 (105)
12 2cqc_A Arginine/serine-rich sp 99.2 1.2E-10 3.9E-15 91.9 10.5 82 272-361 12-93 (95)
13 2dnz_A Probable RNA-binding pr 99.2 1.4E-10 4.7E-15 91.7 10.8 82 273-362 3-84 (95)
14 3mdf_A Peptidyl-prolyl CIS-tra 99.2 1.3E-10 4.4E-15 89.9 10.4 80 273-360 5-84 (85)
15 2krb_A Eukaryotic translation 99.2 3.3E-11 1.1E-15 93.3 6.8 76 275-357 1-80 (81)
16 3bs9_A Nucleolysin TIA-1 isofo 99.2 2.1E-10 7.3E-15 89.0 11.5 80 274-361 5-84 (87)
17 4fxv_A ELAV-like protein 1; RN 99.2 1.8E-10 6.2E-15 93.5 11.3 78 276-361 20-97 (99)
18 1whw_A Hypothetical protein ri 99.2 2.2E-10 7.5E-15 91.4 11.3 84 272-363 5-88 (99)
19 2e5h_A Zinc finger CCHC-type a 99.2 1.8E-10 6.1E-15 90.8 10.1 80 273-360 14-93 (94)
20 2dgo_A Cytotoxic granule-assoc 99.1 3.8E-10 1.3E-14 92.5 11.8 84 272-363 12-95 (115)
21 2cq0_A Eukaryotic translation 99.1 2.4E-10 8.2E-15 91.9 10.2 83 272-362 12-94 (103)
22 2lxi_A RNA-binding protein 10; 99.1 7.5E-11 2.6E-15 94.1 6.9 80 275-362 1-82 (91)
23 2a3j_A U1 small nuclear ribonu 99.1 2E-10 6.9E-15 98.2 9.9 85 272-363 26-110 (127)
24 3md1_A Nuclear and cytoplasmic 99.1 5.7E-10 2E-14 85.8 11.6 80 275-362 1-80 (83)
25 2ywk_A Putative RNA-binding pr 99.1 4E-10 1.4E-14 89.0 10.8 81 272-361 13-93 (95)
26 3ulh_A THO complex subunit 4; 99.1 5.5E-10 1.9E-14 90.2 11.9 81 272-361 26-106 (107)
27 1p27_B RNA-binding protein 8A; 99.1 4E-10 1.4E-14 90.9 10.7 83 272-362 20-102 (106)
28 2cqb_A Peptidyl-prolyl CIS-tra 99.1 2.1E-10 7.1E-15 92.0 8.8 84 272-363 9-92 (102)
29 2cpf_A RNA binding motif prote 99.1 3.7E-10 1.3E-14 89.8 10.1 86 273-363 3-88 (98)
30 1x5t_A Splicing factor 3B subu 99.1 3.2E-10 1.1E-14 89.7 9.6 83 273-363 3-86 (96)
31 2cpz_A CUG triplet repeat RNA- 99.1 3.6E-10 1.2E-14 92.8 10.2 83 272-362 22-104 (115)
32 1x5s_A Cold-inducible RNA-bind 99.1 2.5E-10 8.6E-15 91.5 8.9 83 272-362 9-91 (102)
33 2cpi_A CCR4-NOT transcription 99.1 4.6E-10 1.6E-14 92.2 10.7 86 273-363 13-101 (111)
34 2do4_A Squamous cell carcinoma 99.1 5.3E-10 1.8E-14 89.4 10.7 82 272-362 14-95 (100)
35 2cqi_A Nucleolysin TIAR; RNA r 99.1 9.4E-10 3.2E-14 88.4 12.2 82 272-363 12-93 (103)
36 4a8x_A RNA-binding protein wit 99.1 3.8E-10 1.3E-14 87.5 9.5 82 274-362 3-84 (88)
37 2khc_A Testis-specific RNP-typ 99.1 3.8E-10 1.3E-14 92.9 10.0 81 272-360 37-117 (118)
38 1x5u_A Splicing factor 3B subu 99.1 3.8E-10 1.3E-14 90.8 9.7 83 272-362 12-94 (105)
39 2dnm_A SRP46 splicing factor; 99.1 2.5E-10 8.7E-15 91.8 8.6 83 272-362 10-92 (103)
40 1oo0_B CG8781-PA, drosophila Y 99.1 6.4E-10 2.2E-14 90.4 10.9 83 272-362 23-105 (110)
41 2cq3_A RNA-binding protein 9; 99.1 9.5E-10 3.3E-14 88.4 11.7 82 272-363 12-93 (103)
42 2wbr_A GW182, gawky, LD47780P; 99.1 3.4E-10 1.2E-14 92.4 9.1 77 274-364 6-82 (89)
43 2do0_A HnRNP M, heterogeneous 99.1 1.3E-09 4.5E-14 88.9 12.6 82 272-362 12-93 (114)
44 2cph_A RNA binding motif prote 99.1 4.7E-10 1.6E-14 90.4 9.6 84 272-363 12-97 (107)
45 2dgs_A DAZ-associated protein 99.1 7E-10 2.4E-14 88.6 10.5 82 272-362 7-88 (99)
46 1whx_A Hypothetical protein ri 99.1 3.3E-10 1.1E-14 93.5 8.8 80 274-367 9-88 (111)
47 2dgx_A KIAA0430 protein; RRM d 99.1 8.9E-10 3E-14 88.1 10.9 82 274-362 8-89 (96)
48 2jrs_A RNA-binding protein 39; 99.1 7E-10 2.4E-14 91.1 10.4 83 272-362 23-105 (108)
49 3r27_A HnRNP L, heterogeneous 99.1 6.6E-10 2.3E-14 92.1 10.2 77 272-362 18-96 (100)
50 1nu4_A U1A RNA binding domain; 99.1 3.4E-10 1.2E-14 89.7 8.1 85 272-363 5-89 (97)
51 2la6_A RNA-binding protein FUS 99.1 6.7E-10 2.3E-14 88.8 9.8 81 272-360 10-98 (99)
52 1x4a_A Splicing factor, argini 99.1 9.3E-10 3.2E-14 89.5 10.7 80 272-362 19-98 (109)
53 4f25_A Polyadenylate-binding p 99.1 8.5E-10 2.9E-14 91.3 10.6 78 275-362 5-82 (115)
54 1u6f_A Tcubp1, RNA-binding pro 99.1 7.9E-10 2.7E-14 93.4 10.6 85 272-364 39-123 (139)
55 2ek1_A RNA-binding protein 12; 99.1 3.6E-10 1.2E-14 89.3 7.9 81 273-361 13-93 (95)
56 2fy1_A RNA-binding motif prote 99.1 1.1E-09 3.9E-14 91.0 11.2 86 273-367 5-90 (116)
57 3lqv_A PRE-mRNA branch site pr 99.1 8.3E-10 2.8E-14 90.4 10.2 81 272-363 5-85 (115)
58 1x4h_A RNA-binding protein 28; 99.1 7.7E-10 2.6E-14 89.7 9.8 83 272-362 12-100 (111)
59 1p1t_A Cleavage stimulation fa 99.1 3.9E-10 1.3E-14 90.5 7.9 82 274-363 7-88 (104)
60 3ex7_B RNA-binding protein 8A; 99.1 6.8E-10 2.3E-14 92.4 9.6 83 272-362 19-101 (126)
61 3ucg_A Polyadenylate-binding p 99.0 1.3E-09 4.5E-14 84.8 10.7 79 275-362 6-84 (89)
62 2dgv_A HnRNP M, heterogeneous 99.0 7.8E-10 2.7E-14 86.8 9.4 81 272-362 5-85 (92)
63 1wex_A Hypothetical protein (r 99.0 6E-10 2.1E-14 91.9 9.0 81 272-366 12-94 (104)
64 2kt5_A RNA and export factor-b 99.0 1.3E-09 4.3E-14 90.8 11.0 81 273-362 33-113 (124)
65 1h2v_Z 20 kDa nuclear CAP bind 99.0 1.3E-09 4.6E-14 94.1 11.6 82 273-362 37-118 (156)
66 3md3_A Nuclear and cytoplasmic 99.0 1.9E-09 6.3E-14 91.3 12.1 82 272-361 84-165 (166)
67 2kxn_B Transformer-2 protein h 99.0 4.4E-10 1.5E-14 95.6 8.1 83 272-362 43-125 (129)
68 2dnh_A Bruno-like 5, RNA bindi 99.0 1.4E-09 4.7E-14 87.5 10.6 83 272-363 12-97 (105)
69 2cqd_A RNA-binding region cont 99.0 2.6E-09 8.9E-14 87.7 12.2 82 272-362 14-95 (116)
70 2cq1_A PTB-like protein L; RRM 99.0 1.5E-09 5E-14 89.3 10.6 80 272-365 12-93 (101)
71 2d9p_A Polyadenylate-binding p 99.0 8.3E-10 2.8E-14 88.7 9.0 81 272-362 12-92 (103)
72 2div_A TRNA selenocysteine ass 99.0 1.1E-09 3.7E-14 87.3 9.3 83 272-362 6-93 (99)
73 2dng_A Eukaryotic translation 99.0 2.2E-09 7.5E-14 86.4 11.3 81 272-362 12-92 (103)
74 2dgp_A Bruno-like 4, RNA bindi 99.0 9.7E-10 3.3E-14 88.6 9.1 84 272-363 10-96 (106)
75 2qfj_A FBP-interacting repress 99.0 1.2E-09 4.2E-14 96.9 10.6 82 273-362 123-204 (216)
76 2dgu_A Heterogeneous nuclear r 99.0 2.3E-09 7.7E-14 86.5 11.1 75 273-363 9-83 (103)
77 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.0 1.5E-09 5E-14 91.2 10.4 80 273-360 61-140 (140)
78 1wi8_A EIF-4B, eukaryotic tran 99.0 1.8E-09 6.2E-14 87.0 10.4 83 272-363 12-94 (104)
79 2dgt_A RNA-binding protein 30; 99.0 2.1E-09 7.3E-14 84.8 10.6 75 272-362 7-81 (92)
80 2cq4_A RNA binding motif prote 99.0 1.2E-09 4.2E-14 89.4 9.3 81 274-363 24-104 (114)
81 2err_A Ataxin-2-binding protei 99.0 1.2E-09 4.3E-14 89.5 9.3 81 272-362 26-106 (109)
82 2xnq_A Nuclear polyadenylated 99.0 2.2E-09 7.5E-14 86.4 10.5 76 272-362 19-94 (97)
83 2jwn_A Embryonic polyadenylate 99.0 2.4E-09 8.1E-14 88.8 11.0 80 274-362 35-114 (124)
84 2cpe_A RNA-binding protein EWS 99.0 1.4E-09 4.9E-14 88.7 9.3 83 272-362 12-102 (113)
85 2cqp_A RNA-binding protein 12; 99.0 1.1E-09 3.9E-14 87.0 8.4 81 273-361 13-93 (98)
86 2dhg_A TRNA selenocysteine ass 99.0 1.4E-09 4.7E-14 87.4 8.9 83 273-364 7-91 (104)
87 1x5p_A Negative elongation fac 99.0 2.6E-09 9E-14 85.2 10.4 75 273-363 13-87 (97)
88 1x4d_A Matrin 3; structural ge 99.0 8E-10 2.7E-14 91.4 7.5 78 272-362 12-91 (102)
89 3zzy_A Polypyrimidine tract-bi 99.0 3.6E-09 1.2E-13 91.5 11.7 79 272-363 23-106 (130)
90 2cq2_A Hypothetical protein LO 99.0 1.5E-09 5.1E-14 91.9 8.9 83 269-365 19-108 (114)
91 2dnq_A RNA-binding protein 4B; 99.0 2.6E-09 9E-14 83.9 9.8 75 272-362 5-79 (90)
92 1why_A Hypothetical protein ri 99.0 1.9E-09 6.6E-14 85.8 9.1 76 273-362 15-92 (97)
93 1x4f_A Matrin 3; structural ge 99.0 6.4E-10 2.2E-14 93.7 6.5 88 272-374 22-111 (112)
94 2cpd_A Apobec-1 stimulating pr 99.0 3.3E-09 1.1E-13 84.7 10.4 74 273-362 13-88 (99)
95 2dnp_A RNA-binding protein 14; 99.0 2.4E-09 8E-14 84.2 9.3 75 273-363 7-81 (90)
96 1rk8_A CG8781-PA, CG8781-PA pr 99.0 3.9E-09 1.3E-13 92.5 11.4 82 273-362 70-151 (165)
97 2g4b_A Splicing factor U2AF 65 99.0 2.3E-09 8E-14 91.8 9.7 80 274-361 93-172 (172)
98 2ad9_A Polypyrimidine tract-bi 99.0 1.7E-09 5.7E-14 92.1 8.6 80 272-365 28-109 (119)
99 2ytc_A PRE-mRNA-splicing facto 99.0 2.7E-09 9.3E-14 82.5 9.1 74 273-360 10-84 (85)
100 2e5i_A Heterogeneous nuclear r 99.0 4.9E-09 1.7E-13 89.7 11.5 78 272-363 20-102 (124)
101 2jvo_A Nucleolar protein 3; nu 99.0 2.7E-09 9.1E-14 87.8 9.4 75 272-362 28-102 (108)
102 2lkz_A RNA-binding protein 5; 98.9 1.4E-09 4.7E-14 88.4 7.4 79 275-361 9-93 (95)
103 1x4g_A Nucleolysin TIAR; struc 98.9 3.3E-09 1.1E-13 86.4 9.7 77 272-362 22-98 (109)
104 2kn4_A Immunoglobulin G-bindin 98.9 2.7E-09 9.3E-14 91.8 9.7 82 273-362 68-149 (158)
105 1x4e_A RNA binding motif, sing 98.9 4.6E-10 1.6E-14 87.1 4.4 79 273-359 3-81 (85)
106 2cpj_A Non-POU domain-containi 98.9 1.9E-09 6.5E-14 86.2 7.7 76 273-362 13-88 (99)
107 1b7f_A Protein (SXL-lethal pro 98.9 4.6E-09 1.6E-13 89.4 10.4 80 273-360 87-168 (168)
108 2e44_A Insulin-like growth fac 98.9 3.9E-09 1.3E-13 83.6 9.2 78 274-363 14-92 (96)
109 3n9u_C Cleavage and polyadenyl 98.9 5.4E-09 1.8E-13 91.9 11.0 81 274-362 54-136 (156)
110 2kvi_A Nuclear polyadenylated 98.9 2.3E-09 7.9E-14 85.5 7.9 75 273-362 8-82 (96)
111 3s7r_A Heterogeneous nuclear r 98.9 1.1E-08 3.7E-13 79.6 11.3 78 273-359 9-86 (87)
112 1s79_A Lupus LA protein; RRM, 98.9 3.1E-09 1.1E-13 87.1 8.6 79 274-362 10-88 (103)
113 2yh0_A Splicing factor U2AF 65 98.9 5E-09 1.7E-13 91.7 10.5 82 273-362 112-193 (198)
114 1sjq_A Polypyrimidine tract-bi 98.9 3.2E-09 1.1E-13 88.6 8.7 77 272-362 13-91 (105)
115 3p5t_L Cleavage and polyadenyl 98.9 8.7E-10 3E-14 87.0 5.0 78 277-362 3-82 (90)
116 1x4c_A Splicing factor, argini 98.9 6E-09 2.1E-13 85.0 10.1 75 273-362 13-92 (108)
117 2ki2_A SS-DNA binding protein 98.9 1.4E-09 4.8E-14 85.2 6.0 78 276-362 2-79 (90)
118 2dh8_A DAZ-associated protein 98.9 3.2E-09 1.1E-13 85.6 8.2 82 272-362 13-94 (105)
119 1fxl_A Paraneoplastic encephal 98.9 6.7E-09 2.3E-13 87.9 10.2 79 274-360 87-167 (167)
120 1wf1_A RNA-binding protein RAL 98.9 4.1E-09 1.4E-13 85.9 8.4 75 273-362 25-99 (110)
121 2la4_A Nuclear and cytoplasmic 98.9 3.9E-09 1.3E-13 84.5 8.2 74 274-361 26-99 (101)
122 1sjr_A Polypyrimidine tract-bi 98.9 6.3E-09 2.1E-13 93.4 10.2 79 273-363 42-124 (164)
123 2dis_A Unnamed protein product 98.9 7.1E-09 2.4E-13 83.9 9.5 83 273-363 6-92 (109)
124 1fxl_A Paraneoplastic encephal 98.9 1.3E-08 4.5E-13 86.0 11.4 81 274-362 1-81 (167)
125 2dgw_A Probable RNA-binding pr 98.9 1.3E-08 4.5E-13 79.9 10.5 79 273-362 8-86 (91)
126 1x4b_A Heterogeneous nuclear r 98.9 6.9E-09 2.4E-13 85.2 9.2 80 274-362 26-105 (116)
127 3tyt_A Heterogeneous nuclear r 98.9 6.2E-09 2.1E-13 94.9 9.8 78 272-361 1-78 (205)
128 3pgw_A U1-A; protein-RNA compl 98.9 8.5E-09 2.9E-13 96.1 10.8 76 272-360 204-280 (282)
129 2j76_E EIF-4B, EIF4B, eukaryot 98.9 3.4E-09 1.2E-13 85.3 6.9 82 272-362 16-97 (100)
130 1x5o_A RNA binding motif, sing 98.9 9.5E-09 3.2E-13 84.0 9.6 80 273-361 23-110 (114)
131 2rs2_A Musashi-1, RNA-binding 98.9 1.1E-08 3.6E-13 84.0 9.8 82 272-362 22-103 (109)
132 1b7f_A Protein (SXL-lethal pro 98.9 1.1E-08 3.6E-13 87.2 10.0 81 274-362 2-82 (168)
133 2db1_A Heterogeneous nuclear r 98.9 5.2E-09 1.8E-13 87.2 7.9 84 273-366 15-101 (118)
134 3pgw_S U1-70K; protein-RNA com 98.9 8.8E-09 3E-13 104.5 11.2 82 273-362 100-181 (437)
135 2cqg_A TDP-43, TAR DNA-binding 98.9 2E-08 6.7E-13 80.6 11.0 81 272-362 12-92 (103)
136 4f02_A Polyadenylate-binding p 98.9 1.1E-08 3.7E-13 92.5 10.5 78 275-362 103-180 (213)
137 2cpy_A RNA-binding protein 12; 98.8 6.1E-09 2.1E-13 85.9 8.0 85 273-367 13-98 (114)
138 2f3j_A RNA and export factor b 98.8 9.4E-09 3.2E-13 92.0 9.6 82 273-363 86-167 (177)
139 2mss_A Protein (musashi1); RNA 98.8 3E-09 1E-13 80.5 5.4 62 294-359 13-74 (75)
140 2diu_A KIAA0430 protein; struc 98.8 7.9E-09 2.7E-13 85.4 8.1 76 273-362 6-83 (96)
141 3nmr_A Cugbp ELAV-like family 98.8 1.4E-08 4.6E-13 86.8 9.9 79 274-361 94-175 (175)
142 2fc9_A NCL protein; structure 98.8 1.3E-08 4.6E-13 81.3 9.1 80 272-363 12-91 (101)
143 2e5j_A Methenyltetrahydrofolat 98.8 1E-08 3.4E-13 81.8 8.3 78 272-362 16-93 (97)
144 2hvz_A Splicing factor, argini 98.8 5.8E-09 2E-13 83.5 6.8 74 277-363 2-75 (101)
145 2cpx_A Hypothetical protein FL 98.8 2.1E-09 7.1E-14 87.9 4.3 80 272-363 22-105 (115)
146 2lea_A Serine/arginine-rich sp 98.8 3.5E-09 1.2E-13 90.5 5.9 81 274-362 46-126 (135)
147 2i2y_A Fusion protein consists 98.8 9.9E-09 3.4E-13 88.1 8.6 78 272-362 70-147 (150)
148 3pgw_A U1-A; protein-RNA compl 98.8 2E-08 6.8E-13 93.6 11.3 84 272-362 6-89 (282)
149 3q2s_C Cleavage and polyadenyl 98.8 1E-08 3.4E-13 95.3 9.3 80 275-362 68-149 (229)
150 2dnr_A Synaptojanin-1; RRM dom 98.8 2.4E-08 8.2E-13 81.7 10.3 79 272-362 4-85 (91)
151 1l3k_A Heterogeneous nuclear r 98.8 2.6E-08 8.8E-13 87.0 11.0 80 274-362 103-182 (196)
152 1wel_A RNA-binding protein 12; 98.8 3.2E-09 1.1E-13 88.7 5.0 84 273-365 23-106 (124)
153 4f02_A Polyadenylate-binding p 98.8 2.4E-08 8.3E-13 90.2 11.2 82 273-362 13-94 (213)
154 2cjk_A Nuclear polyadenylated 98.8 1.2E-08 4.1E-13 86.9 8.6 80 274-362 86-165 (167)
155 1wg5_A Heterogeneous nuclear r 98.8 1.6E-08 5.3E-13 82.1 8.7 84 273-366 13-97 (104)
156 2bz2_A Negative elongation fac 98.8 7.9E-09 2.7E-13 86.9 7.2 75 273-363 37-111 (121)
157 2m2b_A RNA-binding protein 10; 98.8 3.5E-09 1.2E-13 89.4 4.6 82 272-362 20-107 (131)
158 2cqh_A IGF-II mRNA-binding pro 98.8 1.8E-08 6.1E-13 79.4 8.3 75 273-362 6-82 (93)
159 3md3_A Nuclear and cytoplasmic 98.8 3.9E-08 1.3E-12 83.1 10.9 78 276-362 1-78 (166)
160 1uaw_A Mouse-musashi-1; RNP-ty 98.8 8.4E-09 2.9E-13 78.1 5.8 75 277-360 2-76 (77)
161 1qm9_A Polypyrimidine tract-bi 98.8 1.1E-08 3.8E-13 90.2 7.5 77 273-362 118-196 (198)
162 2jvr_A Nucleolar protein 3; RN 98.8 2.8E-08 9.6E-13 83.1 9.5 76 274-361 27-103 (111)
163 3egn_A RNA-binding protein 40; 98.8 2.8E-08 9.7E-13 84.5 9.6 80 272-362 42-129 (143)
164 3smz_A Protein raver-1, ribonu 98.8 2.4E-08 8.3E-13 93.1 9.9 84 273-364 182-265 (284)
165 2ghp_A U4/U6 snRNA-associated 98.8 3E-08 1E-12 92.7 10.5 82 273-361 208-289 (292)
166 1wg1_A KIAA1579 protein, homol 98.8 2.2E-08 7.6E-13 78.5 8.0 77 274-365 4-80 (88)
167 2dnn_A RNA-binding protein 12; 98.7 2.9E-08 1E-12 82.5 8.9 83 274-367 15-97 (109)
168 2hgl_A HNRPF protein, heteroge 98.7 1.4E-08 4.9E-13 87.7 7.3 82 274-365 43-127 (136)
169 1fjc_A Nucleolin RBD2, protein 98.7 2.4E-08 8.1E-13 79.0 7.5 77 273-362 14-90 (96)
170 1wez_A HnRNP H', FTP-3, hetero 98.7 2.4E-08 8.3E-13 81.3 7.7 81 272-363 12-92 (102)
171 2qfj_A FBP-interacting repress 98.7 3.9E-08 1.3E-12 87.2 9.2 81 274-362 27-107 (216)
172 2e5g_A U6 snRNA-specific termi 98.7 7.1E-08 2.4E-12 76.4 9.8 79 273-365 6-84 (94)
173 2adc_A Polypyrimidine tract-bi 98.7 3.9E-08 1.3E-12 89.8 9.4 77 273-362 149-227 (229)
174 2hzc_A Splicing factor U2AF 65 98.7 5.3E-08 1.8E-12 75.3 8.8 71 273-358 4-85 (87)
175 2lcw_A RNA-binding protein FUS 98.2 1.7E-09 5.7E-14 89.1 0.0 82 273-362 5-94 (116)
176 1fje_B Nucleolin RBD12, protei 98.7 4.3E-08 1.5E-12 84.4 8.8 76 274-362 98-173 (175)
177 2fc8_A NCL protein; structure 98.7 5.8E-08 2E-12 77.5 8.5 80 272-362 12-91 (102)
178 2lmi_A GRSF-1, G-rich sequence 98.7 1E-08 3.5E-13 83.6 4.0 83 273-365 9-94 (107)
179 2xs2_A Deleted in azoospermia- 98.7 4.8E-08 1.6E-12 78.2 7.9 77 274-361 8-84 (102)
180 2adc_A Polypyrimidine tract-bi 98.7 5.2E-08 1.8E-12 89.0 8.8 79 272-362 31-109 (229)
181 1ufw_A Synaptojanin 2; RNP dom 98.7 7.2E-08 2.5E-12 79.5 8.6 79 270-360 10-92 (95)
182 3beg_B Splicing factor, argini 98.7 5E-08 1.7E-12 80.7 7.6 72 274-360 15-86 (115)
183 1fj7_A Nucleolin RBD1, protein 98.7 9.9E-09 3.4E-13 82.1 3.2 80 273-362 15-94 (101)
184 3u1l_A PRE-mRNA-splicing facto 98.6 6.4E-08 2.2E-12 91.6 9.0 81 273-362 132-228 (240)
185 1l3k_A Heterogeneous nuclear r 98.6 1.6E-07 5.4E-12 82.0 10.8 81 273-362 11-91 (196)
186 1iqt_A AUF1, heterogeneous nuc 98.6 2.1E-08 7E-13 75.7 4.0 62 294-359 13-74 (75)
187 2dha_A FLJ20171 protein; RRM d 98.6 4.8E-08 1.7E-12 83.0 6.4 84 273-366 21-108 (123)
188 3smz_A Protein raver-1, ribonu 98.6 3E-07 1E-11 85.7 11.8 84 273-364 93-176 (284)
189 3tht_A Alkylated DNA repair pr 98.6 1.9E-07 6.4E-12 92.6 10.8 82 268-362 11-98 (345)
190 2d9o_A DNAJ (HSP40) homolog, s 98.6 2.2E-07 7.4E-12 76.4 8.8 80 274-363 9-90 (100)
191 1qm9_A Polypyrimidine tract-bi 98.6 7.8E-08 2.7E-12 84.8 6.5 76 275-362 3-78 (198)
192 2hgn_A Heterogeneous nuclear r 98.6 3E-08 1E-12 86.0 3.7 82 274-366 45-126 (139)
193 2voo_A Lupus LA protein; RNA-b 98.5 4E-07 1.4E-11 82.3 10.5 78 274-361 108-185 (193)
194 2hgm_A HNRPF protein, heteroge 98.5 1.8E-07 6E-12 80.1 6.6 81 274-365 41-123 (126)
195 2cjk_A Nuclear polyadenylated 98.5 3.6E-07 1.2E-11 77.7 8.3 78 274-361 2-79 (167)
196 2ghp_A U4/U6 snRNA-associated 98.5 9.2E-07 3.1E-11 82.6 11.5 88 272-370 38-125 (292)
197 3nmr_A Cugbp ELAV-like family 98.5 9.1E-07 3.1E-11 75.4 10.3 83 274-362 2-87 (175)
198 2dnl_A Cytoplasmic polyadenyla 98.4 7.9E-07 2.7E-11 73.1 9.3 77 273-357 6-82 (114)
199 2j8a_A Histone-lysine N-methyl 98.4 4.4E-07 1.5E-11 79.2 7.8 83 276-362 3-95 (136)
200 3sde_A Paraspeckle component 1 98.4 9.4E-07 3.2E-11 82.3 10.6 83 272-363 93-179 (261)
201 3sde_A Paraspeckle component 1 98.4 5.5E-07 1.9E-11 83.9 8.9 76 273-362 20-95 (261)
202 3tyt_A Heterogeneous nuclear r 98.4 6.3E-07 2.2E-11 81.5 9.0 72 272-353 120-193 (205)
203 3d2w_A TAR DNA-binding protein 98.4 1.3E-06 4.4E-11 69.2 9.3 73 273-362 9-83 (89)
204 2yh0_A Splicing factor U2AF 65 98.4 1.8E-06 6.1E-11 75.3 10.7 75 273-362 2-87 (198)
205 2g4b_A Splicing factor U2AF 65 98.3 2.3E-06 8E-11 72.9 8.7 73 274-361 3-86 (172)
206 1wf0_A TDP-43, TAR DNA-binding 98.3 1.1E-06 3.9E-11 68.4 5.9 73 273-362 3-77 (88)
207 1fje_B Nucleolin RBD12, protei 98.2 8.9E-07 3.1E-11 76.1 4.0 81 272-362 10-90 (175)
208 1owx_A Lupus LA protein, SS-B, 97.8 6.7E-05 2.3E-09 64.1 7.8 77 273-362 16-95 (121)
209 1wey_A Calcipressin 1; structu 97.6 0.00025 8.6E-09 59.2 9.5 89 276-375 6-96 (104)
210 2l9w_A U4/U6 snRNA-associated- 96.9 0.0022 7.7E-08 54.3 7.2 75 274-362 20-99 (117)
211 1wwh_A Nucleoporin 35, nucleop 95.3 0.047 1.6E-06 46.5 7.6 60 292-361 35-95 (119)
212 3p3d_A Nucleoporin 53; structu 93.5 0.062 2.1E-06 46.5 4.2 71 292-363 18-99 (132)
213 2i2y_A Fusion protein consists 86.3 0.25 8.6E-06 41.5 1.7 39 323-362 11-50 (150)
214 2kn4_A Immunoglobulin G-bindin 82.8 1.3 4.3E-05 37.2 4.5 35 309-348 2-36 (158)
215 1uw4_A UPF3X; nonsense mediate 78.2 19 0.00065 28.8 9.7 67 278-350 4-70 (91)
216 3pq1_A Poly(A) RNA polymerase; 68.6 2.2 7.4E-05 43.8 2.4 43 294-344 66-108 (464)
217 1whv_A Poly(A)-specific ribonu 44.4 29 0.00099 28.5 4.7 56 274-346 15-70 (100)
218 3lpe_A Putative transcription 40.2 69 0.0024 25.1 6.3 33 307-347 40-72 (92)
219 3ctr_A Poly(A)-specific ribonu 33.0 29 0.00098 28.6 3.0 55 275-346 6-60 (101)
220 2l08_A Regulator of nonsense t 27.7 36 0.0012 27.7 2.7 28 323-350 51-78 (97)
221 2dhx_A Poly (ADP-ribose) polym 21.4 2.7E+02 0.0092 22.8 6.8 72 274-362 7-83 (104)
No 1
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.92 E-value=3e-25 Score=188.74 Aligned_cols=99 Identities=43% Similarity=0.797 Sum_probs=89.9
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCC-CCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPN-FPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~-~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
.||+||+|+|||+++|+++||++||++||+|||.|.+|.|+++.... ....++|++||+|.+.++|.+|+..||||+|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 48999999999999999999999999999999999999999875421 11245799999999999999999999999999
Q ss_pred CeEEEEEecccccccccccC
Q 016857 352 GRVVRATFYDEERFSKNELA 371 (381)
Q Consensus 352 GR~V~a~fy~ee~F~~~~l~ 371 (381)
||.|+|.||++++|.+++|.
T Consensus 98 GR~i~v~~~~~~~f~~~~~~ 117 (118)
T 3ue2_A 98 GRKVVAEVYDQERFDNSDLS 117 (118)
T ss_dssp TEECEEEEECHHHHHTTCCC
T ss_pred CcEEEEEEcChHhccccccC
Confidence 99999999999999999874
No 2
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.91 E-value=1.8e-24 Score=179.70 Aligned_cols=99 Identities=36% Similarity=0.575 Sum_probs=88.5
Q ss_pred CCCCceEEEEecccCCCCChh-----hHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhh
Q 016857 271 NGPPTRVLLLRNMVGPGEVDD-----ELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDL 345 (381)
Q Consensus 271 ~g~pSrVVvL~NMv~~~El~d-----ELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~L 345 (381)
+|.||+||+|+|||+++++.+ +|++||+++|+|||.|.+|.|+++.... .....|++||+|.+.++|.+|+..|
T Consensus 1 ~g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~-~~~~~G~~fV~f~~~~~A~~Ai~~l 79 (105)
T 3v4m_A 1 GGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGV-EVPGCGKIFVEFTSVFDCQKAMQGL 79 (105)
T ss_dssp CCSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTB-CCTTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCC-CcCCcEEEEEEECCHHHHHHHHHHh
Confidence 367999999999999998864 5889999999999999999999765321 1246899999999999999999999
Q ss_pred CCCeeCCeEEEEEeccccccccccc
Q 016857 346 DGRFFGGRVVRATFYDEERFSKNEL 370 (381)
Q Consensus 346 nGR~F~GR~V~a~fy~ee~F~~~~l 370 (381)
|||+|+||.|+|.|+++++|.++++
T Consensus 80 nG~~f~GR~i~v~~~~~~~f~~~~~ 104 (105)
T 3v4m_A 80 TGRKFANRVVVTKYCDPDSYHRRDF 104 (105)
T ss_dssp TTCEETTEECEEEEECHHHHHTTCC
T ss_pred CCCEeCCCEEEEEEeCHHHHhhccC
Confidence 9999999999999999999998875
No 3
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.90 E-value=1e-23 Score=175.32 Aligned_cols=102 Identities=56% Similarity=0.962 Sum_probs=90.3
Q ss_pred CCCCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCe
Q 016857 270 FNGPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRF 349 (381)
Q Consensus 270 ~~g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~ 349 (381)
+.+.+|+||+|+||++++++++++++||+++|++||.|.+|.|+++... .....|++||+|.+.++|.+|+..||||+
T Consensus 3 i~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~--~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 3 MGKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA--PDDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp GGGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSC--CTTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCC--CCCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 3457999999999999999999999999999999999999999986432 12468999999999999999999999999
Q ss_pred eCCeEEEEEecccccccccccCCC
Q 016857 350 FGGRVVRATFYDEERFSKNELAPL 373 (381)
Q Consensus 350 F~GR~V~a~fy~ee~F~~~~l~p~ 373 (381)
|+||.|.|.|+++++|..++|.|.
T Consensus 81 ~~Gr~i~v~~a~~~~f~~~~~~~~ 104 (105)
T 2pe8_A 81 FGGRVVKACFYNLDKFRVLDLAEQ 104 (105)
T ss_dssp ETTEECEEEECCHHHHHTTCCCCC
T ss_pred ECCcEEEEEEcCHHHhhhhhcccC
Confidence 999999999999999999999885
No 4
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.87 E-value=2.1e-22 Score=170.40 Aligned_cols=89 Identities=25% Similarity=0.442 Sum_probs=81.6
Q ss_pred CCceEEEEecccCCCCC-----hhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCC
Q 016857 273 PPTRVLLLRNMVGPGEV-----DDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDG 347 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El-----~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnG 347 (381)
.||+||+|+|||+++|+ ++||++||+++|+|||.|.+|.|+++. ..|++||+|.+.++|.+|++.|||
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-------~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-------AQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-------TTCCEEEECSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-------CcEEEEEEECCHHHHHHHHHHhCC
Confidence 48999999999999874 468999999999999999999997642 379999999999999999999999
Q ss_pred CeeCCeEEEEEeccccccccc
Q 016857 348 RFFGGRVVRATFYDEERFSKN 368 (381)
Q Consensus 348 R~F~GR~V~a~fy~ee~F~~~ 368 (381)
|+|+||.|+|.|++++.|...
T Consensus 78 ~~f~GR~i~v~~~~~~~y~~~ 98 (114)
T 3s6e_A 78 RWFAGKMITAAYVPLPTYHNL 98 (114)
T ss_dssp CEETTEECEEEEECHHHHHHH
T ss_pred CEECCEEEEEEEEcHHHHHHh
Confidence 999999999999999998764
No 5
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.78 E-value=4.5e-19 Score=162.04 Aligned_cols=100 Identities=43% Similarity=0.784 Sum_probs=90.7
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCC-CCCCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNF-PVDEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~-~~~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
...++|++|.||+++.++++++++||++||++||.|.+|.|+++...+. ....+|++||+|.+.++|.+|+..||||+|
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 4578999999999999999999999999999999999999998754421 235789999999999999999999999999
Q ss_pred CCeEEEEEecccccccccccC
Q 016857 351 GGRVVRATFYDEERFSKNELA 371 (381)
Q Consensus 351 ~GR~V~a~fy~ee~F~~~~l~ 371 (381)
+||.|.|.||++++|++++|.
T Consensus 201 ~gr~i~~~~~~~~~f~~~~~~ 221 (222)
T 3dxb_A 201 AGRKVVAEVYDQERFDNSDLS 221 (222)
T ss_dssp SSSBCEEEECCHHHHHTTCCC
T ss_pred CCeEEEEEEcCHHHhhhcccC
Confidence 999999999999999998874
No 6
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.71 E-value=3e-17 Score=135.69 Aligned_cols=83 Identities=30% Similarity=0.495 Sum_probs=71.3
Q ss_pred ceEEEEeccc-CCCCC-------------------hhhHHHHHHHHH-hccCCeeEEEEeeeCCCCCCCCCceEEEEEeC
Q 016857 275 TRVLLLRNMV-GPGEV-------------------DDELEDEVGSEC-AKYGTVTRVLIFEITEPNFPVDEAVRIFVQFE 333 (381)
Q Consensus 275 SrVVvL~NMv-~~~El-------------------~dELeeDI~EEC-sKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~ 333 (381)
|+||+|+||+ ++... .+++++||+++| ++||.|.+|.|+++.. ....|++||+|.
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~----~~~~G~~fV~f~ 76 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG----DHLVGNVYVKFR 76 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS----SSSEEEEEEEES
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC----CCccEEEEEEEC
Confidence 6899999999 45421 135779999999 9999999999987542 256899999999
Q ss_pred CHHHHHHHHHhhCCCeeCCeEEEEEecc
Q 016857 334 RSEQTTKALIDLDGRFFGGRVVRATFYD 361 (381)
Q Consensus 334 d~esA~kAv~~LnGR~F~GR~V~a~fy~ 361 (381)
+.++|.+|+..|||++|+||.|.|.|++
T Consensus 77 ~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 77 REEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp CHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred CHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 9999999999999999999999999874
No 7
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=131.35 Aligned_cols=91 Identities=27% Similarity=0.607 Sum_probs=79.1
Q ss_pred CCCceEEEEecccCCCCCh------hhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhh
Q 016857 272 GPPTRVLLLRNMVGPGEVD------DELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDL 345 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~------dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~L 345 (381)
..+|+||+|+||+++.++. +++++||+++|++||.|.+|.|... ...|++||+|.+.++|.+|+..|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~-------~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR-------HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT-------CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC-------CCCEEEEEEECCHHHHHHHHHHc
Confidence 4589999999999998754 4589999999999999999987421 25799999999999999999999
Q ss_pred CCCeeCCeEEEEEeccc-ccccccc
Q 016857 346 DGRFFGGRVVRATFYDE-ERFSKNE 369 (381)
Q Consensus 346 nGR~F~GR~V~a~fy~e-e~F~~~~ 369 (381)
||+.|+||.|.+.|+.. .+|..++
T Consensus 85 ng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp TTCEETTEECEEEECCSCCCSSCCC
T ss_pred CCCEECCcEEEEEEeCCCCCcccCC
Confidence 99999999999999876 6776554
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.25 E-value=5.3e-11 Score=98.77 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=70.1
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|++.|+-. ++. ++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 4 ~p~~~lfV~nL~~--~~t---e~~L~~~F~~~G~i~~v~i~~d~~tg---~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 4 IPLKEVTFARLND--NVR---ETFLKDMCRKYGEVEEVEILLHPRTR---KHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp SCCCEEEEESCCT--TCC---HHHHHHHHTTTSCEEEEEEEECTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCC--CCC---HHHHHHHHHhcCCeeEEEEEECCCCC---ceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4788999999742 222 56788999999999999999865433 568999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
|.|.+.+...
T Consensus 76 r~i~V~~a~~ 85 (110)
T 3s8s_A 76 NIIHAQLDIK 85 (110)
T ss_dssp EECEEEECST
T ss_pred eEEEEEECCC
Confidence 9999999865
No 9
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.23 E-value=1.9e-11 Score=98.91 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=75.3
Q ss_pred CceEEEEecccCCCCCh-hhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 274 PTRVLLLRNMVGPGEVD-DELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~-dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++|++.|+-...+.. +-.+++|++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg---~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATG---KTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTT---EECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCC---ccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 47899999986433333 56788999999999999999999876533 467999999999999999999999999999
Q ss_pred -eEEEEEeccc-cccc
Q 016857 353 -RVVRATFYDE-ERFS 366 (381)
Q Consensus 353 -R~V~a~fy~e-e~F~ 366 (381)
|.|.+.++.. ++|.
T Consensus 82 ~r~l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 82 KHRLFLYTMKDVERYN 97 (100)
T ss_dssp SCBCEEEESHHHHHHH
T ss_pred CeEEEEEECchhhhhh
Confidence 9999999864 4554
No 10
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.20 E-value=9.4e-11 Score=93.35 Aligned_cols=83 Identities=19% Similarity=0.390 Sum_probs=69.8
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
|++.|++.|+-. ++. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|+
T Consensus 1 P~~~l~V~nLp~--~~t---~~~l~~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 72 (96)
T 2x1f_A 1 PSRVVYLGSIPY--DQT---EEQILDLCSNVGPVINLKMMFDPQTG---RSKGYAFIEFRDLESSASAVRNLNGYQLGSR 72 (96)
T ss_dssp CCSEEEEESCCT--TCC---HHHHHHHHHTTSCEEEEECCBCTTTC---CBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEECCCC--CCC---HHHHHHHHHhcCCEEEEEEEeCCCCC---ccceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 578999999742 222 56788999999999999998764432 4679999999999999999999999999999
Q ss_pred EEEEEeccccc
Q 016857 354 VVRATFYDEER 364 (381)
Q Consensus 354 ~V~a~fy~ee~ 364 (381)
.|.+.|.....
T Consensus 73 ~l~V~~a~~~~ 83 (96)
T 2x1f_A 73 FLKCGYSSNSD 83 (96)
T ss_dssp ECEEEECSCSS
T ss_pred EEEEEEcCCCC
Confidence 99999987643
No 11
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.20 E-value=7.8e-11 Score=95.95 Aligned_cols=90 Identities=16% Similarity=0.311 Sum_probs=72.5
Q ss_pred CCCceEEEEecccCCC-CChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 272 GPPTRVLLLRNMVGPG-EVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~-El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
...++.|++.|+-... +-.+..+++|++.|++||.|.+|.|++. . ....|++||+|.+.++|.+|+..|||..|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~--~---g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE--D---GKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCB--T---TBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCC--C---CCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 3467899999976321 1122378999999999999999999832 2 24679999999999999999999999999
Q ss_pred CCe-EEEEEeccc-cccc
Q 016857 351 GGR-VVRATFYDE-ERFS 366 (381)
Q Consensus 351 ~GR-~V~a~fy~e-e~F~ 366 (381)
+|| .|.+.++.. ++|.
T Consensus 87 ~g~~~l~V~~a~~~~k~~ 104 (105)
T 2nlw_A 87 DKQHTFRVNLFTDFDKYM 104 (105)
T ss_dssp STTCEEEEECSCCCCCCC
T ss_pred CCCceEEEEEcchHhhhc
Confidence 999 999999864 5553
No 12
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.2e-10 Score=91.94 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=68.8
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..++++|++.|+-.. +. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 12 ~~~~~~l~v~nlp~~--~t---~~~l~~~f~~~G~v~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLY--TT---ERDLREVFSKYGPIADVSIVYDQQSR---RSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp CCGGGCEEEESCCSS--CC---HHHHHHHHHTTSCEEEEEEEECSSSS---SEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEECCCCC--CC---HHHHHHHHHhcCCeeEEEEEEcCCCC---CcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 347889999997532 22 45788999999999999998764432 45799999999999999999999999999
Q ss_pred CeEEEEEecc
Q 016857 352 GRVVRATFYD 361 (381)
Q Consensus 352 GR~V~a~fy~ 361 (381)
|+.|++.|..
T Consensus 84 g~~l~v~~a~ 93 (95)
T 2cqc_A 84 GRRIRVSGPS 93 (95)
T ss_dssp TEEEEEECCS
T ss_pred CEEEEEEecC
Confidence 9999999864
No 13
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.4e-10 Score=91.70 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=69.5
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|+|.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 3 ~~~~~l~v~nlp~~--~---t~~~l~~~f~~~G~v~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (95)
T 2dnz_A 3 SGSSGLYVGSLHFN--I---TEDMLRGIFEPFGKIDNIVLMKDSDTG---RSKGYGFITFSDSECARRALEQLNGFELAG 74 (95)
T ss_dssp SCCCEEEEESCCTT--C---CHHHHHHHHTTTSCEEEEEEECCSSSC---CCCSEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCcEEEEeCCCCC--C---CHHHHHHHHHhcCCEeEEEEeecCCCC---ceeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 47889999997432 2 256788999999999999999764432 467999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|++.|...
T Consensus 75 ~~l~V~~a~~ 84 (95)
T 2dnz_A 75 RPMRVGHVTE 84 (95)
T ss_dssp SCCEEEESSC
T ss_pred cEEEEEEccc
Confidence 9999999865
No 14
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.19 E-value=1.3e-10 Score=89.85 Aligned_cols=80 Identities=24% Similarity=0.346 Sum_probs=67.8
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.++++|++.|+-. ++. ++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 5 ~~~~~l~V~nl~~--~~~---~~~l~~~f~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 5 TTKRVLYVGGLAE--EVD---DKVLHAAFIPFGDITDIQIPLDYETE---KHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp CCSSEEEEECCCT--TCC---HHHHHHHHGGGSCEEEEECCEETTTT---EECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCC--CCC---HHHHHHHHhccCCEEEEEEEECCCCC---ccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4788999999742 222 46888999999999999998764432 457899999999999999999999999999
Q ss_pred eEEEEEec
Q 016857 353 RVVRATFY 360 (381)
Q Consensus 353 R~V~a~fy 360 (381)
+.|++.|.
T Consensus 77 ~~l~v~~a 84 (85)
T 3mdf_A 77 RTIRVNLA 84 (85)
T ss_dssp EECEEEEC
T ss_pred cEEEEEEc
Confidence 99999875
No 15
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.18 E-value=3.3e-11 Score=93.33 Aligned_cols=76 Identities=17% Similarity=0.272 Sum_probs=62.8
Q ss_pred ceEEEEecccCCCCCh---hhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 275 TRVLLLRNMVGPGEVD---DELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 275 SrVVvL~NMv~~~El~---dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
+++|++.|+- .++. +..++||++.|++||.|.+|.|++.. ....|++||+|.+.++|.+|+..|||..|+
T Consensus 1 ~~~l~V~nLp--~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~-----g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 1 DSVIVVDNVP--QVGPDRLEKLKNVIHKIFSKFGKITNDFYPEED-----GKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CCEEEEESCC--CCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBT-----TBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CCEEEEeCCC--CCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCC-----CcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 4688999983 3332 23679999999999999999987421 245799999999999999999999999999
Q ss_pred Ce-EEEE
Q 016857 352 GR-VVRA 357 (381)
Q Consensus 352 GR-~V~a 357 (381)
|| .|++
T Consensus 74 g~~~l~V 80 (81)
T 2krb_A 74 KQHTFRV 80 (81)
T ss_dssp SSSCCCC
T ss_pred CceeEEe
Confidence 99 8765
No 16
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.18 E-value=2.1e-10 Score=88.97 Aligned_cols=80 Identities=14% Similarity=0.305 Sum_probs=67.3
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
+++.|++.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|+
T Consensus 5 ~~~~l~v~nlp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (87)
T 3bs9_A 5 SHFHVFVGDLSPE--I---TTAAIAAAFAPFGRISDARVVKDMATG---KSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 76 (87)
T ss_dssp -CEEEEEESCCTT--C---CHHHHHHHHGGGSCEEEEEEEECTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CceEEEEeCCCCC--C---CHHHHHHHHHhcCCEeEEEEEecCCCC---ccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 5788999997432 2 256788999999999999999864332 4679999999999999999999999999999
Q ss_pred EEEEEecc
Q 016857 354 VVRATFYD 361 (381)
Q Consensus 354 ~V~a~fy~ 361 (381)
.|.+.|..
T Consensus 77 ~l~v~~a~ 84 (87)
T 3bs9_A 77 QIRTNWAT 84 (87)
T ss_dssp ECEEEEEC
T ss_pred EEEEEecC
Confidence 99999874
No 17
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.18 E-value=1.8e-10 Score=93.55 Aligned_cols=78 Identities=14% Similarity=0.252 Sum_probs=65.8
Q ss_pred eEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEE
Q 016857 276 RVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVV 355 (381)
Q Consensus 276 rVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V 355 (381)
..|++.|+-. ++. ++||++.|++||.|.+|.|.++...+ ...|++||+|.+.++|.+|+..|||..|+||.|
T Consensus 20 t~lfV~nLp~--~~t---e~~L~~~F~~~G~I~~v~i~~d~~tg---~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 20 TNLIVNYLPQ--NMT---QDELRSLFSSIGEVESAKLIRDKVAG---HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp SEEEEESCCT--TCC---HHHHHHHHHTTSCEEEEEEEECSSSC---CEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEeCCCC--CCC---HHHHHHHHHhcCCEEEeEeeecCCCC---cccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3588999742 332 46888999999999999999865433 467999999999999999999999999999999
Q ss_pred EEEecc
Q 016857 356 RATFYD 361 (381)
Q Consensus 356 ~a~fy~ 361 (381)
++.|..
T Consensus 92 ~V~~Ak 97 (99)
T 4fxv_A 92 KVSYAR 97 (99)
T ss_dssp EEEECC
T ss_pred EEEEee
Confidence 999863
No 18
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=2.2e-10 Score=91.35 Aligned_cols=84 Identities=20% Similarity=0.282 Sum_probs=70.3
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-.. +. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 5 ~~~~~~l~V~nlp~~--~t---~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 5 SSGSGRLFVRNLSYT--SS---EEDLEKLFSAYGPLSELHYPIDSLTK---KPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76 (99)
T ss_dssp CCSCEEEEEECCCTT--CC---HHHHHHHHHTTSCEEEEECCCCTTTC---CCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred CCCCCEEEEeCCCCC--CC---HHHHHHHHHhcCCEeEEEEEecCCCC---CcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 347889999997532 22 45788999999999999998764332 46799999999999999999999999999
Q ss_pred CeEEEEEecccc
Q 016857 352 GRVVRATFYDEE 363 (381)
Q Consensus 352 GR~V~a~fy~ee 363 (381)
|+.|.+.+....
T Consensus 77 g~~l~V~~a~~~ 88 (99)
T 1whw_A 77 GRMLHVLPSTIK 88 (99)
T ss_dssp SCEEEEEECCCC
T ss_pred CcEEEEEEcCCC
Confidence 999999998653
No 19
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.8e-10 Score=90.84 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=67.2
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|+|.|+-. ++ -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 14 ~~~~~l~V~nlp~--~~---t~~~l~~~f~~~G~v~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 14 PSKSTVYVSNLPF--SL---TNNDLYRIFSKYGKVVKVTIMKDKDTR---KSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp CCTTSEEEESCCT--TS---CHHHHHHHTTTTSCEEEEEECCCSSSC---CCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEECCCC--CC---CHHHHHHHHHhcCCeEEEEEEeCCCCC---CcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 4678899999742 22 256788999999999999998764432 457899999999999999999999999999
Q ss_pred eEEEEEec
Q 016857 353 RVVRATFY 360 (381)
Q Consensus 353 R~V~a~fy 360 (381)
+.|++.|.
T Consensus 86 ~~l~v~~a 93 (94)
T 2e5h_A 86 RVIKASIA 93 (94)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEec
Confidence 99999885
No 20
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.14 E-value=3.8e-10 Score=92.46 Aligned_cols=84 Identities=13% Similarity=0.306 Sum_probs=70.5
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++.|+|.|+-.. + -++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 12 ~~~~~~l~V~nlp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPE--I---TTEDIKAAFAPFGRISDARVVKDMATG---KSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp STTCEEEEEESCCTT--C---CHHHHHHHHGGGSCEEEEEEEECTTTC---CEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCcEEEEeCCCCC--C---CHHHHHHHHHhcCCeEEEEEEEcCCCC---CcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 347889999997422 2 246788999999999999999764332 46799999999999999999999999999
Q ss_pred CeEEEEEecccc
Q 016857 352 GRVVRATFYDEE 363 (381)
Q Consensus 352 GR~V~a~fy~ee 363 (381)
|+.|.+.|....
T Consensus 84 g~~l~V~~a~~~ 95 (115)
T 2dgo_A 84 GRQIRTNWATRK 95 (115)
T ss_dssp TEECEEEESSCC
T ss_pred CEEEEEEEccCC
Confidence 999999998653
No 21
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=2.4e-10 Score=91.91 Aligned_cols=83 Identities=12% Similarity=0.270 Sum_probs=70.0
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 12 ~~~~~~l~V~nlp~~--~---t~~~l~~~f~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 12 ADDNATIRVTNLSED--T---RETDLQELFRPFGSISRIYLAKDKTTG---QSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp CSSSEEEEEESCCTT--C---CHHHHHTTSTTTCCEEEEEEEECSSSC---SEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHHhCCCeEEEEEeecCCCC---ceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 347899999997532 2 246788999999999999998764332 46799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|++.|...
T Consensus 84 g~~l~v~~a~~ 94 (103)
T 2cq0_A 84 HLILNVEWAKP 94 (103)
T ss_dssp TEECEEEESSC
T ss_pred CcEEEEEECCC
Confidence 99999999865
No 22
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.13 E-value=7.5e-11 Score=94.15 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=65.9
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccC-CeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC-CCeeCC
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYG-TVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD-GRFFGG 352 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG-~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln-GR~F~G 352 (381)
|++|+|+|+-.. + -++||++.|++|| .|.+|.|+++...+ ..+|++||+|.+.++|.+|+..|+ +..|+|
T Consensus 1 S~~i~v~nLp~~--~---te~~l~~~F~~~G~~v~~v~i~~d~~t~---~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g 72 (91)
T 2lxi_A 1 SNIVMLRMLPQA--A---TEDDIRGQLQSHGVQAREVRLMRNKSSG---QSRGFAFVEFSHLQDATRWMEANQHSLNILG 72 (91)
T ss_dssp CCEEEEETCCSS--C---CHHHHHHHHHHHTCCCSBCCSSSCSSSC---CCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred CCEEEEeCCCCC--C---CHHHHHHHHHHhCCEeEEEEEEecCCCC---CcCceEEEEecCHHHHHHHHHhcCCCeEECC
Confidence 679999997432 2 2568889999999 89999998765433 568999999999999999999885 557999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
|.|.+.|...
T Consensus 73 r~i~V~~a~~ 82 (91)
T 2lxi_A 73 QKVSMHYSDP 82 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEEcCC
Confidence 9999999864
No 23
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=2e-10 Score=98.21 Aligned_cols=85 Identities=16% Similarity=0.273 Sum_probs=71.5
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..++++|++.|+-. .--.++|+++|.+.|++||.|.+|.|... ....|++||+|.+.++|.+|+..|||..|.
T Consensus 26 ~~p~~~LfV~nL~~-~~~e~~L~~~L~~~F~~~G~I~~v~i~~~------~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~ 98 (127)
T 2a3j_A 26 TEPSQVVLITNINP-EVPKEKLQALLYALASSQGDILDIVVDLS------DDNSGKAYIVFATQESAQAFVEAFQGYPFQ 98 (127)
T ss_dssp CSCCSEEEEESCCT-TSCHHHHHHHHHHHHHHHSCEEEEEECCC------CSSCCCEEEEESSHHHHHHHHHHSTTCCCT
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHHHhccCCCeEEEEeccC------CCcCCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 45788999999742 22246788889999999999999998642 135799999999999999999999999999
Q ss_pred CeEEEEEecccc
Q 016857 352 GRVVRATFYDEE 363 (381)
Q Consensus 352 GR~V~a~fy~ee 363 (381)
||.|.+.|....
T Consensus 99 gr~l~V~~a~~~ 110 (127)
T 2a3j_A 99 GNPLVITFSETP 110 (127)
T ss_dssp TSCCEEEECCCC
T ss_pred CCEEEEEEccCc
Confidence 999999998653
No 24
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.13 E-value=5.7e-10 Score=85.80 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=66.3
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
|..|.+.|+-. ++. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|+.
T Consensus 1 t~~l~V~nlp~--~~t---~~~l~~~f~~~G~i~~~~i~~~~~~~---~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 72 (83)
T 3md1_A 1 TFNLFVGDLNV--NVD---DETLRNAFKDFPSYLSGHVMWDMQTG---SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 72 (83)
T ss_dssp CEEEEEECCCT--TCC---HHHHHHHHTTSTTEEEEEEEECTTTC---CEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CeEEEEeCCCC--CCC---HHHHHHHHHhcCCeeEEEEEEcCCCC---CccceEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45678888732 222 56788999999999999998764432 46899999999999999999999999999999
Q ss_pred EEEEeccc
Q 016857 355 VRATFYDE 362 (381)
Q Consensus 355 V~a~fy~e 362 (381)
|.+.|...
T Consensus 73 l~v~~a~~ 80 (83)
T 3md1_A 73 LRINWAAK 80 (83)
T ss_dssp CEEEECCC
T ss_pred EEEEecCc
Confidence 99998754
No 25
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.12 E-value=4e-10 Score=88.98 Aligned_cols=81 Identities=22% Similarity=0.215 Sum_probs=68.3
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|++.|+-.. +. ++||++.|++||.|.+|.|..+.. ....|++||+|.+.++|.+|+..|||..|+
T Consensus 13 ~~~~~~l~v~nlp~~--~~---~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (95)
T 2ywk_A 13 EEADRTVFVGNLEAR--VR---EEILYELFLQAGPLTKVTICKDRE----GKPKSFGFVCFKHPESVSYAIALLNGIRLY 83 (95)
T ss_dssp TTGGGEEEEECCCTT--CC---HHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSTHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCC--CC---HHHHHHHHHhcCCEEEEEEEECCC----CCCceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 346789999997432 22 467889999999999999998643 246799999999999999999999999999
Q ss_pred CeEEEEEecc
Q 016857 352 GRVVRATFYD 361 (381)
Q Consensus 352 GR~V~a~fy~ 361 (381)
|+.|.+.|..
T Consensus 84 g~~l~V~~a~ 93 (95)
T 2ywk_A 84 GRPINVSGPS 93 (95)
T ss_dssp TEECEEECCC
T ss_pred CCEEEEEEcC
Confidence 9999998864
No 26
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.12 E-value=5.5e-10 Score=90.20 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=68.3
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-. ++. ++||++.|++||.|.+|.|..+. .+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 26 ~~~~~~l~V~nlp~--~~t---~~~l~~~F~~~G~i~~v~i~~~~-~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 26 VETGGKLLVSNLDF--GVS---DADIQELFAEFGTLKKAAVHYDR-SG---RSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp CCCSEEEEEESCCT--TCC---HHHHHHHHHTTSCEEEEEEEECT-TS---CEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCC--CCC---HHHHHHHHHhcCCeEEEEEEECC-CC---CcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 35788999999742 222 46788999999999999999765 22 46799999999999999999999999999
Q ss_pred CeEEEEEecc
Q 016857 352 GRVVRATFYD 361 (381)
Q Consensus 352 GR~V~a~fy~ 361 (381)
|+.|.+.|..
T Consensus 97 g~~l~V~~a~ 106 (107)
T 3ulh_A 97 GRPMNIQLVT 106 (107)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEeC
Confidence 9999999864
No 27
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=4e-10 Score=90.90 Aligned_cols=83 Identities=13% Similarity=0.217 Sum_probs=69.4
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..++++|++.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 20 ~~~~~~l~V~nlp~~--~---t~~~l~~~f~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 91 (106)
T 1p27_B 20 SVEGWILFVTGVHEE--A---TEEDIHDKFAEYGEIKNIHLNLDRRTG---YLKGYTLVEYETYKEAQAAMEGLNGQDLM 91 (106)
T ss_dssp BTTBEEEEEECCCTT--C---CHHHHHHHHGGGSCEEEEEEEECTTTS---SEEEEEEEEESCHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHhccCCeEEEEEEecCCCC---ceeeEEEEEECCHHHHHHHHHHhcCCEEC
Confidence 346889999997532 2 246788999999999999998765432 45799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 92 g~~l~V~~a~~ 102 (106)
T 1p27_B 92 GQPISVDWCFV 102 (106)
T ss_dssp SSBCEEEESEE
T ss_pred CcEEEEEeecC
Confidence 99999998743
No 28
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=2.1e-10 Score=91.97 Aligned_cols=84 Identities=23% Similarity=0.324 Sum_probs=70.3
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..++++|+|.|+-. ++. ++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 9 ~~~~~~l~V~nLp~--~~t---~~~l~~~f~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 9 ATTKRVLYVGGLAE--EVD---DKVLHAAFIPFGDITDIQIPLDYETE---KHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CCCCSCEEEESCCS--SCC---HHHHHHHHTTTSCCCCEECCCCSSSC---CCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCC--CCC---HHHHHHHhhccCCEEEEEEEecCCCC---CcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34788999999743 222 56788999999999999998754332 46799999999999999999999999999
Q ss_pred CeEEEEEecccc
Q 016857 352 GRVVRATFYDEE 363 (381)
Q Consensus 352 GR~V~a~fy~ee 363 (381)
|+.|.+.|....
T Consensus 81 g~~l~V~~a~~~ 92 (102)
T 2cqb_A 81 GRTIRVNLAKPM 92 (102)
T ss_dssp TEEEEEEECCCC
T ss_pred CcEEEEEeCCCC
Confidence 999999998654
No 29
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.11 E-value=3.7e-10 Score=89.84 Aligned_cols=86 Identities=19% Similarity=0.233 Sum_probs=69.4
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|+|.|+-.. + -++||++.|++||.|.+|.|..+....-.....|++||+|.+.++|.+|+..|||..|+|
T Consensus 3 ~~~~~l~V~nLp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 3 SGSSGLFIKNLNFS--T---TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCCEEEESCCTT--C---CHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 46789999997422 2 256788999999999999999764310001357899999999999999999999999999
Q ss_pred eEEEEEecccc
Q 016857 353 RVVRATFYDEE 363 (381)
Q Consensus 353 R~V~a~fy~ee 363 (381)
+.|.+.+....
T Consensus 78 ~~l~V~~a~~~ 88 (98)
T 2cpf_A 78 HKLEVRISERA 88 (98)
T ss_dssp EECEEECSSCS
T ss_pred eEEEEEEccCC
Confidence 99999998653
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=3.2e-10 Score=89.74 Aligned_cols=83 Identities=11% Similarity=0.264 Sum_probs=69.3
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEE-EEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRV-LIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V-~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
.+++.|+|.|+-.. + -++||++.|++||.|.+| .|+.+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 3 ~~~~~l~V~nLp~~--~---t~~~l~~~F~~~G~i~~~~~i~~~~~~g---~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (96)
T 1x5t_A 3 SGSSGIFIGNLDPE--I---DEKLLYDTFSAFGVILQTPKIMRDPDTG---NSKGYAFINFASFDASDAAIEAMNGQYLC 74 (96)
T ss_dssp SCCCEEEEECCCTT--C---CHHHHHHHHHTTSCBSSCCEECCCTTTC---SCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred CCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCeeEEEEEEEcCCCC---CcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 46789999997532 2 256888999999999999 898754332 46799999999999999999999999999
Q ss_pred CeEEEEEecccc
Q 016857 352 GRVVRATFYDEE 363 (381)
Q Consensus 352 GR~V~a~fy~ee 363 (381)
|+.|.+.|....
T Consensus 75 g~~l~v~~a~~~ 86 (96)
T 1x5t_A 75 NRPITVSYAFKK 86 (96)
T ss_dssp TEECEEEESCCC
T ss_pred CEEEEEEEeccc
Confidence 999999998653
No 31
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.11 E-value=3.6e-10 Score=92.78 Aligned_cols=83 Identities=14% Similarity=0.261 Sum_probs=69.9
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-.. +. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 22 ~~~~~~l~V~nLp~~--~t---~~~l~~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 22 GPEGANLFIYHLPQE--FG---DQDLLQMFMPFGNVVSAKVFIDKQTN---LSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp CSTTCCEEEESCCSS--CC---HHHHHHHHGGGSCCSEEEEEECSSSC---SEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEeCCCCC--CC---HHHHHHHHHhcCCeEEEEEEECCCCC---CcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456789999997532 22 46788999999999999999865432 46799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|++.|...
T Consensus 94 g~~l~V~~a~~ 104 (115)
T 2cpz_A 94 MKRLKVQLKRS 104 (115)
T ss_dssp TEECEEECCCC
T ss_pred CEEEEEEEcCC
Confidence 99999999864
No 32
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2.5e-10 Score=91.46 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=69.5
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-.. + -++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 9 ~~~~~~l~v~nLp~~--~---t~~~l~~~f~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFD--T---NEQSLEQVFSKYGQISEVVVVKDRETQ---RSRGFGFVTFENIDDAKDAMMAMNGKSVD 80 (102)
T ss_dssp CCCCSEEEEESCCTT--C---CHHHHHHHHHHHSCCCEEEECCCSSSC---SCCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred CCCCCEEEEECCCCC--C---CHHHHHHHHHhcCCeEEEEEEeCCCCC---CcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 346889999997422 2 256788999999999999998764432 45799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|++.|...
T Consensus 81 g~~l~v~~a~~ 91 (102)
T 1x5s_A 81 GRQIRVDQAGK 91 (102)
T ss_dssp SCCCEEEEEEC
T ss_pred CeEEEEEECCC
Confidence 99999999865
No 33
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=4.6e-10 Score=92.24 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=68.2
Q ss_pred CCceEEEEecccCCCCChhhHHHHHH---HHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCe
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVG---SECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRF 349 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~---EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~ 349 (381)
...+.|++.|+-.. +. ++||+ +.|++||.|.+|.|+.+...+......|++||+|.+.++|.+|+..|||..
T Consensus 13 ~~~~~l~V~nLp~~--~~---~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 13 VQKNLVFVVGLSQR--LA---DPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp CCSSCEEEEEECTT--TC---CHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred cCCCEEEEECCCCC--CC---HHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 35678889997532 21 24566 899999999999998765432222456999999999999999999999999
Q ss_pred eCCeEEEEEecccc
Q 016857 350 FGGRVVRATFYDEE 363 (381)
Q Consensus 350 F~GR~V~a~fy~ee 363 (381)
|+||.|.+.|....
T Consensus 88 ~~gr~l~V~~a~~k 101 (111)
T 2cpi_A 88 VDGRTLKASLGTTK 101 (111)
T ss_dssp ETTEEEEEESCCCC
T ss_pred ECCEEEEEEecccc
Confidence 99999999998653
No 34
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5.3e-10 Score=89.41 Aligned_cols=82 Identities=15% Similarity=0.289 Sum_probs=68.8
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-.. + -++||++.|++||.|.+|.|..+. . ....|++||+|.+.++|.+|+..|||..|+
T Consensus 14 ~~~~~~l~v~nlp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~-~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 14 SLEKHKLFISGLPFS--C---TKEELEEICKAHGTVKDLRLVTNR-A---GKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp CCCCSCEEEESCCTT--C---CHHHHHHHHTTTSCEEEEEEEECT-T---SCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHHhCCCeEEEEEEECC-C---CCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 346788999997532 2 246788999999999999998764 2 245799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 85 g~~l~v~~a~~ 95 (100)
T 2do4_A 85 ENIIKVAISNS 95 (100)
T ss_dssp SCEEEEEECCC
T ss_pred CEEEEEEECCC
Confidence 99999999754
No 35
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=9.4e-10 Score=88.41 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=69.3
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-. ++ -++||++.|++||.|.+|.|..+.. ...|++||+|.+.++|.+|+..|||..|+
T Consensus 12 ~~~~~~l~V~nlp~--~~---t~~~l~~~F~~~G~i~~v~i~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 12 DGQPRTLYVGNLSR--DV---TEVLILQLFSQIGPCKSCKMITEHT-----SNDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp SCCCCEEEEESCCT--TC---CHHHHHHHHHHHSCEEEEEEECCCC-----SSCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCc--cC---CHHHHHHHHHhcCCEeEEEEEecCC-----CCCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 34788999999753 22 2467889999999999999987532 24799999999999999999999999999
Q ss_pred CeEEEEEecccc
Q 016857 352 GRVVRATFYDEE 363 (381)
Q Consensus 352 GR~V~a~fy~ee 363 (381)
|+.|.+.|....
T Consensus 82 g~~l~V~~a~~~ 93 (103)
T 2cqi_A 82 GKEVKVNWATTP 93 (103)
T ss_dssp TEEEEEEECCCT
T ss_pred CCeEEEEECCCC
Confidence 999999998653
No 36
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.10 E-value=3.8e-10 Score=87.54 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=66.8
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.++.|++.|+-. ++ -++||++.|++||.|.+|.|..+...+ ....|++||+|.+.++|.+|+..|||..|+|+
T Consensus 3 ~~~~l~V~nlp~--~~---t~~~l~~~F~~~G~i~~~~i~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (88)
T 4a8x_A 3 KPTKVHIGRLTR--NV---TKDHIMEIFSTYGKIKMIDMPVERMHP--HLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 75 (88)
T ss_dssp CCCEEEEECCCT--TC---CHHHHHHHHHTTSCEEEEECCEETTEE--EEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC--CC---CHHHHHHHHHhCCCEEEEEEEeCCCCC--CCCCcEEEEEEecHHHHHHHHHHcCCCeECCe
Confidence 467889999742 22 246788999999999999998765321 11468999999999999999999999999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.+.++..
T Consensus 76 ~l~v~~a~~ 84 (88)
T 4a8x_A 76 EITATAVLA 84 (88)
T ss_dssp ECEEEEECC
T ss_pred EEEEEECCC
Confidence 999999854
No 37
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.10 E-value=3.8e-10 Score=92.88 Aligned_cols=81 Identities=16% Similarity=0.301 Sum_probs=68.0
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++.|+|.|+-.. +. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 37 ~~~~~~l~V~nlp~~--~t---~~~l~~~F~~~G~i~~~~i~~~~~~g---~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 37 GPEGCNLFIYHLPQE--FT---DTDLASTFLPFGNVISAKVFIDKQTS---LSKCFGFVSFDNPDSAQVAIKAMNGFQVG 108 (118)
T ss_dssp CCCSEEEEEECSCTT--CC---HHHHHHHTTTSCEEEEEEECCCSSSS---CCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred CCCCCEEEEeCCCCC--CC---HHHHHHHHHhcCCEEEEEEEeCCCCC---CcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 457889999997422 22 46788999999999999998764332 46799999999999999999999999999
Q ss_pred CeEEEEEec
Q 016857 352 GRVVRATFY 360 (381)
Q Consensus 352 GR~V~a~fy 360 (381)
|+.|++.|.
T Consensus 109 g~~l~V~~a 117 (118)
T 2khc_A 109 TKRLKVQLK 117 (118)
T ss_dssp TEECCEEEC
T ss_pred CEEEEEEec
Confidence 999999874
No 38
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=3.8e-10 Score=90.84 Aligned_cols=83 Identities=14% Similarity=0.072 Sum_probs=69.7
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-. ++. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 12 ~~~~~~l~V~nlp~--~~t---~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 12 RNQDATVYVGGLDE--KVS---EPLLWELFLQAGPVVNTHMPKDRVTG---QHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp CCTTTEEEEECCCT--TCC---HHHHHHHHHTTSCEEEEECCBCSSSC---SBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred CCCCCEEEEeCCCC--CCC---HHHHHHHHHhcCCeEEEEEEecCCCC---cCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 34788999999742 222 46788999999999999998765332 46799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.+...
T Consensus 84 g~~l~v~~a~~ 94 (105)
T 1x5u_A 84 GKPIRVNKASA 94 (105)
T ss_dssp SCBCEEEETTT
T ss_pred CeEEEEEECCC
Confidence 99999999865
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=2.5e-10 Score=91.78 Aligned_cols=83 Identities=22% Similarity=0.212 Sum_probs=69.7
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 10 ~~~~~~l~V~nLp~~--~---t~~~l~~~f~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 10 VDGMITLKVDNLTYR--T---SPDSLRRVFEKYGRVGDVYIPREPHTK---APRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp CSCCCEEEEESCCTT--C---CHHHHHHHHTTTSCEEEEECCBCSSSC---SBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCCCeEEEEeCCCCC--C---CHHHHHHHHHhcCCEEEEEEEeCCCCC---CCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 346889999997532 2 256788999999999999998764432 46799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.+...
T Consensus 82 g~~l~V~~a~~ 92 (103)
T 2dnm_A 82 GRELRVQVARY 92 (103)
T ss_dssp TBCCEEEECSS
T ss_pred CcEEEEEECCc
Confidence 99999999865
No 40
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.09 E-value=6.4e-10 Score=90.43 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=69.4
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..++++|++.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 23 ~~~~~~l~V~nlp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 23 SVEGWILFVTSIHEE--A---QEDEIQEKFCDYGEIKNIHLNLDRRTG---FSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp BTTBEEEEEESCCTT--C---CHHHHHHHHGGGSCEEEEECCBCTTTS---SBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCEEEEEEEecCCCC---CcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 347889999997532 2 246788999999999999998764332 45799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 95 g~~l~V~~a~~ 105 (110)
T 1oo0_B 95 GQTIQVDWCFV 105 (110)
T ss_dssp TEECEEEESEE
T ss_pred CcEEEEEEccc
Confidence 99999999753
No 41
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=9.5e-10 Score=88.38 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=68.9
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++.|++.|+-. ++. ++||++.|++||.|.+|.|..+.. ...|++||+|.+.++|.+|+..|||..|+
T Consensus 12 ~~~~~~l~V~nlp~--~~t---~~~l~~~f~~~G~v~~v~i~~~~~-----~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 12 KSTPKRLHVSNIPF--RFR---DPDLRQMFGQFGKILDVEIIFNER-----GSKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp SCCCCEEEEESCCT--TCC---HHHHHHHGGGTSCEEEEEEECCTT-----TTCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCC--CCC---HHHHHHHHHhcCCeEEEEEEecCC-----CCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34688999999742 222 467889999999999999987542 25799999999999999999999999999
Q ss_pred CeEEEEEecccc
Q 016857 352 GRVVRATFYDEE 363 (381)
Q Consensus 352 GR~V~a~fy~ee 363 (381)
|+.|.+.|....
T Consensus 82 g~~l~v~~a~~~ 93 (103)
T 2cq3_A 82 GRKIEVNNATAR 93 (103)
T ss_dssp TEECEEEECCSS
T ss_pred CEEEEEEEcccC
Confidence 999999998653
No 42
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.09 E-value=3.4e-10 Score=92.35 Aligned_cols=77 Identities=16% Similarity=0.239 Sum_probs=65.8
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.|-=|++.|+-..-+ +++|++.|.+||.|.++.|.. .+|++||+|.+.++|.+|++.|||..++||
T Consensus 6 ~~~wL~VgNL~~~~t-----e~~L~~lF~q~G~V~~~~l~~---------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr 71 (89)
T 2wbr_A 6 GSSWLLLKNLTAQID-----GPTLRTLCMQHGPLVSFHPYL---------NQGIALCKYTTREEANKAQMALNNCVLANT 71 (89)
T ss_dssp CCCEEEEECCCTTCC-----CHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccceEEEeCCCccCC-----HHHHHHHHHhhCCEEEEEEcC---------CCcEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 466677899653322 368889999999999999964 369999999999999999999999999999
Q ss_pred EEEEEeccccc
Q 016857 354 VVRATFYDEER 364 (381)
Q Consensus 354 ~V~a~fy~ee~ 364 (381)
.|.|.|.++++
T Consensus 72 ~I~V~~A~e~~ 82 (89)
T 2wbr_A 72 TIFAESPSENE 82 (89)
T ss_dssp EEEEECCCHHH
T ss_pred EEEEEECCHHH
Confidence 99999998754
No 43
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.3e-09 Score=88.95 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=69.4
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-.. + -++||++.|++||.|.+|.|..+.. ....|++||+|.+.++|.+|+..|||..|+
T Consensus 12 ~~~~~~l~V~nlp~~--~---~~~~l~~~f~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 12 GRLGSTVFVANLDYK--V---GWKKLKEVFSMAGVVVRADILEDKD----GKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp CCCCSCEEEESCCTT--C---CHHHHHHHHTTTSCEEEEEEEECTT----CSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCeEEEEEEECCC----CCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 346889999997532 2 2567889999999999999987642 245799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 83 g~~l~v~~a~~ 93 (114)
T 2do0_A 83 DRPMHVKMDER 93 (114)
T ss_dssp TEECEEEECSC
T ss_pred CCEEEEEEccc
Confidence 99999999864
No 44
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.08 E-value=4.7e-10 Score=90.43 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=69.9
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeee-CCCCCCCCCceEEEEEeCCHHHHHHHHHhh-CCCe
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEI-TEPNFPVDEAVRIFVQFERSEQTTKALIDL-DGRF 349 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~-~~~~~~~~~~GrVFVeF~d~esA~kAv~~L-nGR~ 349 (381)
..+++.|+|.|+-.. + -++||++.|++||.|.+|.|..+ ... ....|++||+|.+.++|.+|+..| ||..
T Consensus 12 ~~~~~~l~V~nlp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 12 KQTTSKILVRNIPFQ--A---NQREIRELFSTFGELKTVRLPKKMTGT---GAHRGFGFVDFITKQDAKKAFNALCHSTH 83 (107)
T ss_dssp SSCCCCEEEESCCTT--C---CHHHHHHHHHTTSCEEEEECCCCCSSS---CSSCSEEEEEESSHHHHHHHHHHHHTCCB
T ss_pred CCCCCEEEEeCCCCc--C---CHHHHHHHHHccCCeEEEEEecCCCCC---CCcCceEEEEECCHHHHHHHHHHhccCCe
Confidence 347889999997532 2 25678899999999999999875 322 246799999999999999999999 9999
Q ss_pred eCCeEEEEEecccc
Q 016857 350 FGGRVVRATFYDEE 363 (381)
Q Consensus 350 F~GR~V~a~fy~ee 363 (381)
|+|+.|.+.|....
T Consensus 84 ~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 84 LYGRRLVLEWADSE 97 (107)
T ss_dssp SSSCBCEEEECCCC
T ss_pred ECCCEEEEEeCCCC
Confidence 99999999998764
No 45
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=7e-10 Score=88.56 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=68.4
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|++.|+-.. + -++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+. |||..|+
T Consensus 7 ~~~~~~l~V~nlp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 77 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHN--C---GETELREYFKKFGVVTEVVMIYDAEKQ---RPRGFGFITFEDEQSVDQAVN-MHFHDIM 77 (99)
T ss_dssp CSSCCEEEEESCCSS--C---CHHHHHHHHSSSSCEEEEEECCCTTTC---SCCSEEEEEESSHHHHHHHHH-HCCCBSS
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCeEEEEEEeCCCCC---CCCceEEEEECCHHHHHHHHH-hCCCEEC
Confidence 347889999997422 2 246788999999999999998764332 467999999999999999999 9999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.+...
T Consensus 78 g~~l~V~~a~~ 88 (99)
T 2dgs_A 78 GKKVEVKRAEP 88 (99)
T ss_dssp SCBCEEEECCC
T ss_pred CeEEEEEECCC
Confidence 99999999864
No 46
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.08 E-value=3.3e-10 Score=93.51 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=68.4
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.+++|++.|+-.. + -++||++.|++||.|.+|.|+. ..|++||+|.+.++|.+|+..|||..|+|+
T Consensus 9 ~~~~l~V~nLp~~--~---te~~L~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 9 SKTVILAKNLPAG--T---LAAEIQETFSRFGSLGRVLLPE---------GGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEEEEEEESCCTT--C---CHHHHHHHHHTTSCEEEEECCS---------SSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCC--C---CHHHHHHHHHhcCCEEEEEEeC---------CCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 4678999997522 2 3568889999999999999864 347899999999999999999999999999
Q ss_pred EEEEEecccccccc
Q 016857 354 VVRATFYDEERFSK 367 (381)
Q Consensus 354 ~V~a~fy~ee~F~~ 367 (381)
.|.+.|.....|..
T Consensus 75 ~l~V~~a~~~~~~~ 88 (111)
T 1whx_A 75 PLYLEWAPIGVFGA 88 (111)
T ss_dssp BCEEEEEETTTTCC
T ss_pred EEEEEECCCCccCC
Confidence 99999998877754
No 47
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=8.9e-10 Score=88.13 Aligned_cols=82 Identities=17% Similarity=0.154 Sum_probs=67.0
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
....|++.|+-.. --+++|++.|++.|++||.|.+|.|+.+.. . .|++||+|.+.++|.+|+..|||..|+||
T Consensus 8 ~~~~l~V~nL~~~-~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~-----~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 8 NGADVQVSNIDYR-LSRKELQQLLQEAFARHGKVKSVELSPHTD-----Y-QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp SCEEEEEESCCTT-SCHHHHHHHHHHHHHHHSCEEEEEECSCCS-----T-TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHhccccCcEEEEEEEeCCC-----C-CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3567888887422 223566666779999999999999986543 1 68999999999999999999999999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|++.+...
T Consensus 81 ~l~V~~a~~ 89 (96)
T 2dgx_A 81 KILVSLATG 89 (96)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 999998743
No 48
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.07 E-value=7e-10 Score=91.13 Aligned_cols=83 Identities=20% Similarity=0.256 Sum_probs=69.8
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|++.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 23 ~~~~~~l~V~nLp~~--~---te~~l~~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFN--I---TEDMLRGIFEPFGRIESIQLMMDSETG---RSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp CSSCEEEEEECCCSS--C---CHHHHHHHHTTTSCEEEEEEEEETTTT---EEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCeEEEEEEEcCCCC---ccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 457889999997422 2 256788999999999999999875432 45799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.+...
T Consensus 95 g~~l~V~~a~~ 105 (108)
T 2jrs_A 95 GRPMKVGHVTE 105 (108)
T ss_dssp SSCCEEECSCS
T ss_pred CEEEEEEEccc
Confidence 99999998753
No 49
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.07 E-value=6.6e-10 Score=92.07 Aligned_cols=77 Identities=16% Similarity=0.314 Sum_probs=65.6
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCe--
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRF-- 349 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~-- 349 (381)
..|+++|.+.|+-.. + -++||++.|++||.|.+|.|.+ .+|++||+|++.++|.+|++.|||..
T Consensus 18 ~~ps~~l~V~NLp~~--~---te~~L~~lF~~fG~V~~v~i~~---------~kg~AFVef~~~~~A~~Av~~ln~~~~~ 83 (100)
T 3r27_A 18 TPASPVVHIRGLIDG--V---VEADLVEALQEFGPISYVVVMP---------KKRQALVEFEDVLGACNAVNYAADNQIY 83 (100)
T ss_dssp CCCCSEEEEESCCTT--C---CHHHHHHHHGGGSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred CCCCcEEEEeCCCCC--C---CHHHHHHHHhccCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHhcCCCce
Confidence 468999999998532 2 2467889999999999999974 25899999999999999999999984
Q ss_pred eCCeEEEEEeccc
Q 016857 350 FGGRVVRATFYDE 362 (381)
Q Consensus 350 F~GR~V~a~fy~e 362 (381)
++||.|.+.|...
T Consensus 84 i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 84 IAGHPAFVNYSTS 96 (100)
T ss_dssp ETTEEEEEEECSC
T ss_pred eCCcEEEEEeccc
Confidence 7899999999753
No 50
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.07 E-value=3.4e-10 Score=89.71 Aligned_cols=85 Identities=19% Similarity=0.332 Sum_probs=69.5
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|++.|+- ..--.++|.+.|.+.|++||.|.+|.|.+.. ...|++||+|.+.++|.+|+..|||..|+
T Consensus 5 ~~~~~~l~V~nLp-~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 5 TRPNHTIYINNLN-EKIKKDELKKSLHAIFSRFGQILDILVSRSL------KMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp -CCCSEEEEESCC-TTSCHHHHHHHHHHHHGGGSCEEEEECCHHH------HHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhCCCEEEEEEEcCC------CcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 3578899999964 2222356777777999999999999987421 23589999999999999999999999999
Q ss_pred CeEEEEEecccc
Q 016857 352 GRVVRATFYDEE 363 (381)
Q Consensus 352 GR~V~a~fy~ee 363 (381)
|+.|.+.|....
T Consensus 78 g~~l~v~~a~~~ 89 (97)
T 1nu4_A 78 DKPMRIQYAKTD 89 (97)
T ss_dssp TEECEEEECSSC
T ss_pred CcEEEEEEccCC
Confidence 999999998653
No 51
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.06 E-value=6.7e-10 Score=88.84 Aligned_cols=81 Identities=15% Similarity=0.264 Sum_probs=68.3
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeE--------EEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHH
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTR--------VLIFEITEPNFPVDEAVRIFVQFERSEQTTKALI 343 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~--------V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~ 343 (381)
..++.+|++.|+-.. + -++||++.|++||.|.+ |.|..+...+ ...|++||+|.+.++|.+|+.
T Consensus 10 ~~~~~~l~V~nLp~~--~---t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g---~~~G~afV~f~~~~~a~~Ai~ 81 (99)
T 2la6_A 10 HSDNNTIFVQGLGEN--V---TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG---KLKGEATVSFDDPPSAKAAID 81 (99)
T ss_dssp CCCCSEEEEECCCSS--C---CHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTC---SEEEEEEEEBSSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHHHhCCEeeccccccccEEEEecCCCC---CeeeEEEEEECCHHHHHHHHH
Confidence 457889999997422 2 25678899999999999 9998764432 467999999999999999999
Q ss_pred hhCCCeeCCeEEEEEec
Q 016857 344 DLDGRFFGGRVVRATFY 360 (381)
Q Consensus 344 ~LnGR~F~GR~V~a~fy 360 (381)
.|||..|+|+.|++.+.
T Consensus 82 ~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 82 WFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHTTCBSSSSBCEEEEC
T ss_pred HhCCCEeCCcEEEEEec
Confidence 99999999999999885
No 52
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=9.3e-10 Score=89.49 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=67.6
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-. ++ -++||++.|++||.|.+|.|.... ...|++||+|.+.++|.+|++.|||..|+
T Consensus 19 ~~~~~~l~V~nLp~--~~---t~~~l~~~F~~~G~v~~~~i~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 19 GNNDCRIYVGNLPP--DI---RTKDIEDVFYKYGAIRDIDLKNRR------GGPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp CCCSSEEEEESCCT--TC---CHHHHHHHHGGGSCEEEEEECCSS------SSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCC--CC---CHHHHHHHHHhcCCeEEEEEEECC------CCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45788999999742 22 246788999999999999996532 35799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 88 g~~l~V~~a~~ 98 (109)
T 1x4a_A 88 GYRLRVEFPRS 98 (109)
T ss_dssp TEECEEECCCC
T ss_pred CeEEEEEEccc
Confidence 99999999865
No 53
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.06 E-value=8.5e-10 Score=91.31 Aligned_cols=78 Identities=15% Similarity=0.296 Sum_probs=66.0
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
+.-|++.|+-. ++. ++||++.|++||.|.+|.|+.+.. ..+|++||+|.+.++|.+|+..|||..++||.
T Consensus 5 ~~~lfV~nLp~--~~t---e~~L~~~F~~~G~v~~v~i~~d~~-----~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 5 SGNIFIKNLDK--SID---NKALYDTFSAFGNILSCKVVCDEN-----GSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp CCEEEEESCCT--TCC---HHHHHHHHGGGSCEEEEEEEEETT-----EEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEECCCCC--CCC---HHHHHHHHhccCCEEEEEEeecCC-----CCCceEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 44689999742 232 468889999999999999998642 35799999999999999999999999999999
Q ss_pred EEEEeccc
Q 016857 355 VRATFYDE 362 (381)
Q Consensus 355 V~a~fy~e 362 (381)
|.+.++..
T Consensus 75 i~V~~a~~ 82 (115)
T 4f25_A 75 VFVGRFKS 82 (115)
T ss_dssp CEEEESSC
T ss_pred EEEEECCC
Confidence 99999864
No 54
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.06 E-value=7.9e-10 Score=93.45 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=71.1
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++.|+|.|+-. ++. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 39 ~~~~~~l~V~nLp~--~~~---~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 39 PDVLRNLMVNYIPT--TVD---EVQLRQLFERYGPIESVKIVCDRETR---QSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110 (139)
T ss_dssp TTTTSEEEEESCST--TCC---HHHHHHHHHHHSCEEEEEEEEETTTT---EEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred CCCCCEEEEeCCCC--CCC---HHHHHHHHHhcCCeEEEEEEEcCCCC---CcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34678999999743 222 46788999999999999999875432 45799999999999999999999999999
Q ss_pred CeEEEEEeccccc
Q 016857 352 GRVVRATFYDEER 364 (381)
Q Consensus 352 GR~V~a~fy~ee~ 364 (381)
|+.|.+.|.....
T Consensus 111 g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 111 NKRLKVALAASGH 123 (139)
T ss_dssp SCEEEEEESSCCC
T ss_pred CeEEEEEECCCCC
Confidence 9999999987643
No 55
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.06 E-value=3.6e-10 Score=89.25 Aligned_cols=81 Identities=26% Similarity=0.301 Sum_probs=66.3
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.++++|++.|+-. ++ -++||++.|++||.|.++.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 13 ~~~~~l~V~nlp~--~~---t~~~l~~~F~~~G~i~~~~~~~~~~~g---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 13 PGPTVIKVQNMPF--TV---SIDEILDFFYGYQVIPGSVCLKYNEKG---MPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp --CEEEEEECCCT--TC---CHHHHHHHTTTSCBCTTCCEEEECTTS---CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHHHhcCCccceEEEEeCCCC---CEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3578999999742 22 256788999999999988887764432 457999999999999999999999999999
Q ss_pred eEEEEEecc
Q 016857 353 RVVRATFYD 361 (381)
Q Consensus 353 R~V~a~fy~ 361 (381)
|.|.+.+.+
T Consensus 85 r~l~v~~a~ 93 (95)
T 2ek1_A 85 RKVKLSGPS 93 (95)
T ss_dssp EECEEECCC
T ss_pred cEEEEEecc
Confidence 999999864
No 56
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.06 E-value=1.1e-09 Score=90.98 Aligned_cols=86 Identities=16% Similarity=0.285 Sum_probs=71.5
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..++.|+|.|+-.. + -++||++.|++||.|.+|.|..+. . ....|++||+|.+.++|.+|+..|||..|+|
T Consensus 5 ~~~~~l~V~nLp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~-~---g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 75 (116)
T 2fy1_A 5 DHPGKLFIGGLNRE--T---NEKMLKAVFGKHGPISEVLLIKDR-T---SKSRGFAFITFENPADAKNAAKDMNGKSLHG 75 (116)
T ss_dssp CSCCEEEEECCTTT--C---CHHHHHHHHHTSSCCSEEEEECST-T---TTCCCEEEEECSSHHHHHHHHHHCSSCBCSS
T ss_pred CCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCEEEEEEEECC-C---CCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46788999997432 2 256788999999999999998764 2 2467999999999999999999999999999
Q ss_pred eEEEEEecccccccc
Q 016857 353 RVVRATFYDEERFSK 367 (381)
Q Consensus 353 R~V~a~fy~ee~F~~ 367 (381)
+.|.+.+........
T Consensus 76 ~~l~V~~a~~~~~~~ 90 (116)
T 2fy1_A 76 KAIKVEQAKKPSFQS 90 (116)
T ss_dssp SBCEEEECCCSSCSS
T ss_pred EEEEEEECCCCCCCC
Confidence 999999997655443
No 57
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.05 E-value=8.3e-10 Score=90.42 Aligned_cols=81 Identities=19% Similarity=0.323 Sum_probs=68.4
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..++++|++.|+- .++. ++||++.|++||.|.+|.|..+. ...|++||+|.+.++|.+|+..|||..|+
T Consensus 5 ~~~~~~l~V~nlp--~~~t---~~~l~~~F~~~G~v~~v~i~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 5 PEVNRILYIRNLP--YKIT---AEEMYDIFGKYGPIRQIRVGNTP------ETRGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp TTCCSEEEEESCC--TTCC---HHHHHHHHHTTSCEEEEEEECST------TTTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCC--CCCC---HHHHHHHHHhcCCeEEEEEeeCC------CCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4578899999974 2222 46788999999999999998642 24799999999999999999999999999
Q ss_pred CeEEEEEecccc
Q 016857 352 GRVVRATFYDEE 363 (381)
Q Consensus 352 GR~V~a~fy~ee 363 (381)
|+.|.+.|+...
T Consensus 74 g~~l~v~~a~~~ 85 (115)
T 3lqv_A 74 NRYLVVLYYNAN 85 (115)
T ss_dssp SCBCEEEECCHH
T ss_pred CeEEEEEEecCC
Confidence 999999999753
No 58
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.05 E-value=7.7e-10 Score=89.73 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=69.9
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC-----
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD----- 346 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln----- 346 (381)
..+++.|+|.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..||
T Consensus 12 ~~~~~~l~V~nLp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~A~~~~~~~~~~ 83 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFD--S---EEEALGEVLQQFGDLKYVRVVLHPDTE---HSKGCAFAQFMTQEAAQKCLAAASLEAEG 83 (111)
T ss_dssp CCCCCCEEEESCCTT--C---CHHHHHHHHHTTSCEEEEECCBCSSSC---CBCSEEEEEESSHHHHHHHHHHHCTTTTT
T ss_pred CCCCCEEEEECCCCC--C---CHHHHHHHHHhcCCeEEEEEEecCCCC---CCccEEEEEECCHHHHHHHHHHhcccccc
Confidence 347889999997532 2 256788999999999999998764432 467999999999999999999999
Q ss_pred -CCeeCCeEEEEEeccc
Q 016857 347 -GRFFGGRVVRATFYDE 362 (381)
Q Consensus 347 -GR~F~GR~V~a~fy~e 362 (381)
|..|+|+.|.+.|...
T Consensus 84 ~~~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 84 GGLKLDGRQLKVDLAVT 100 (111)
T ss_dssp CCEESSSCEEEEECCCC
T ss_pred CCcEEcCEEEEEEECCC
Confidence 9999999999999865
No 59
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=3.9e-10 Score=90.47 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=68.9
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.++.|++.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|+
T Consensus 7 ~~~~l~V~nlp~~--~---~~~~l~~~f~~~G~i~~~~i~~~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 7 SLRSVFVGNIPYE--A---TEEQLKDIFSEVGPVVSFRLVYDRETG---KPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHSCEEEESCCTT--S---CHHHHHHHHHTTSCCSEEEEEEETTTT---EEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CccEEEEeCCCCc--C---CHHHHHHHHHhcCCeeEEEEEeCCCCC---ccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 4678999997522 2 256788999999999999999875432 4579999999999999999999999999999
Q ss_pred EEEEEecccc
Q 016857 354 VVRATFYDEE 363 (381)
Q Consensus 354 ~V~a~fy~ee 363 (381)
.|.+.|....
T Consensus 79 ~l~v~~a~~~ 88 (104)
T 1p1t_A 79 ALRVDNAASE 88 (104)
T ss_dssp CBEEEETTCT
T ss_pred EEEEEeCCCc
Confidence 9999998753
No 60
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.05 E-value=6.8e-10 Score=92.37 Aligned_cols=83 Identities=13% Similarity=0.217 Sum_probs=69.6
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...+++|+|.|+-.. + -++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 19 ~~~~~~l~V~nlp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 19 SVEGWILFVTGVHEE--A---TEEDIHDKFAEYGEIKNIHLNLDRRTG---YLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp CSSSEEEEEESCCTT--C---CHHHHHHHHHTTSCEEEEECCBCTTTS---SBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCeEEEEEEecCCCC---ccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 346889999997522 2 256788999999999999998764332 45799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 91 g~~l~v~~a~~ 101 (126)
T 3ex7_B 91 GQPISVDWCFV 101 (126)
T ss_dssp SSBCEEEESEE
T ss_pred CeEEEEEEecC
Confidence 99999999864
No 61
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.05 E-value=1.3e-09 Score=84.80 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=66.0
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
++.|++.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+ .|||..|+|+.
T Consensus 6 ~~~l~V~nlp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~ 76 (89)
T 3ucg_A 6 ARSIYVGNVDYG--A---TAEELEAHFHGCGSVNRVTILCDKFSG---HPKGFAYIEFSDKESVRTSL-ALDESLFRGRQ 76 (89)
T ss_dssp HTEEEEESCCTT--C---CHHHHHHHHGGGCCEEEEEEEESCSSS---SCCEEEEEEESSTHHHHHHG-GGTTCEETTEE
T ss_pred CCEEEEeCCCCC--C---CHHHHHHHHHhCCCEEEEEEEecCCCC---CcceEEEEEECCHHHHHHHH-hcCCCEECCcE
Confidence 568899997422 2 246788999999999999999764332 45799999999999999999 99999999999
Q ss_pred EEEEeccc
Q 016857 355 VRATFYDE 362 (381)
Q Consensus 355 V~a~fy~e 362 (381)
|.+.+...
T Consensus 77 l~V~~a~~ 84 (89)
T 3ucg_A 77 IKVIPKRT 84 (89)
T ss_dssp CEEEETTT
T ss_pred EEEEEccC
Confidence 99998754
No 62
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.05 E-value=7.8e-10 Score=86.82 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=67.9
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|++.|+-.. + -++||++.|++||.|.+|.|..+. ....|++||+|.+.++|.+|+..|||..|+
T Consensus 5 ~~~~~~l~V~nlp~~--~---t~~~l~~~f~~~G~v~~~~i~~~~-----g~~~g~afV~f~~~~~a~~a~~~l~g~~~~ 74 (92)
T 2dgv_A 5 SSGACQIFVRNLPFD--F---TWKMLKDKFNECGHVLYADIKMEN-----GKSKGCGVVKFESPEVAERACRMMNGMKLS 74 (92)
T ss_dssp SSSCCEEEECSCCTT--C---CHHHHHHHHHTTSCEEEEEEEESS-----SCEEEEEEEEESSHHHHHHHHHHHTTCCBT
T ss_pred CCCCcEEEEeCCCCC--C---CHHHHHHHHHhcCCEEEEEEEccC-----CCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 346789999997532 2 256788999999999999998732 245799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 75 g~~l~v~~a~~ 85 (92)
T 2dgv_A 75 GREIDVRIDRN 85 (92)
T ss_dssp TBCCCCEECSC
T ss_pred CcEEEEEEcCC
Confidence 99999998754
No 63
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.05 E-value=6e-10 Score=91.94 Aligned_cols=81 Identities=16% Similarity=0.306 Sum_probs=67.0
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC--e
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR--F 349 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR--~ 349 (381)
..++++|++.|+-. ++ -++||++.|++||.|.+|.|.. .+|++||+|++.++|.+|+..|||. .
T Consensus 12 ~~p~~~l~V~nLp~--~~---te~~L~~~F~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (104)
T 1wex_A 12 VSVSPVVHVRGLCE--SV---VEADLVEALEKFGTICYVMMMP---------FKRQALVEFENIDSAKECVTFAADVPVY 77 (104)
T ss_dssp CCCCSEEEEESCCS--SC---CHHHHHHHHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCB
T ss_pred CCCCCEEEEeCCCC--CC---CHHHHHHHHHhCCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCce
Confidence 45899999999642 23 2567889999999999999874 2589999999999999999999765 4
Q ss_pred eCCeEEEEEeccccccc
Q 016857 350 FGGRVVRATFYDEERFS 366 (381)
Q Consensus 350 F~GR~V~a~fy~ee~F~ 366 (381)
++||.|.+.|.......
T Consensus 78 i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 78 IAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp SSSSBCEEEECSSSSCC
T ss_pred ECCEEEEEEEccCcccc
Confidence 99999999999765443
No 64
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.04 E-value=1.3e-09 Score=90.80 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=68.8
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|+|.|+-. ++. ++||++.|++||.|.+|.|..+. .+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 33 ~~~~~l~V~nlp~--~~t---~~~l~~~F~~~G~v~~v~i~~~~-~g---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDF--GVS---DADIQELFAEFGTLKKAAVDYDR-SG---RSLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp SSCEEEEEESCCS--SCC---HHHHHHHHHTTSCCSEEEEECCS-SS---SCCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCC--CCC---HHHHHHHHHhcCCeeEEEEEECC-CC---CEeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4688999999742 222 46788999999999999998764 22 467999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.+.|...
T Consensus 104 ~~l~V~~a~~ 113 (124)
T 2kt5_A 104 RPMDIQLVAS 113 (124)
T ss_dssp CEEEEEEECC
T ss_pred cEEEEEEeCC
Confidence 9999999865
No 65
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.04 E-value=1.3e-09 Score=94.08 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=69.8
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.++++|+|.|+-.. + -++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 37 ~~~~~l~V~nlp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFY--T---TEEQIYELFSKSGDIKKIIMGLDKMKK---TACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp TTCCEEEEESCCTT--C---CHHHHHHHHGGGSCEEEEEEEECTTTC---CEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred CCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCeEEEEEEecCCCC---ccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46889999997522 2 256788999999999999999865432 467999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|+|.|...
T Consensus 109 ~~l~V~~a~~ 118 (156)
T 1h2v_Z 109 RIIRTDWDAG 118 (156)
T ss_dssp EECEEEEESC
T ss_pred eEEEEEECCC
Confidence 9999999864
No 66
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.04 E-value=1.9e-09 Score=91.26 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=68.9
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|++.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|.+||+|.+.++|.+|+..|||+.|+
T Consensus 84 ~~~~~~l~v~nl~~~--~---t~~~l~~~f~~~G~i~~~~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 155 (166)
T 3md3_A 84 SDDTFNLFVGDLNVN--V---DDETLRNAFKDFPSYLSGHVMWDMQTG---SSRGYGFVSFTSQDDAQNAMDSMQGQDLN 155 (166)
T ss_dssp CTTCEEEEEESCCTT--C---CHHHHHHHHTTSTTEEEEEEEECTTTC---CEEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCceEEECCCCCC--C---CHHHHHHHHhccCCeeEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 346889999997432 2 246888999999999999999764432 46789999999999999999999999999
Q ss_pred CeEEEEEecc
Q 016857 352 GRVVRATFYD 361 (381)
Q Consensus 352 GR~V~a~fy~ 361 (381)
|+.|.+.|..
T Consensus 156 g~~i~v~~a~ 165 (166)
T 3md3_A 156 GRPLRINWAA 165 (166)
T ss_dssp TEECEEEESC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 67
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.04 E-value=4.4e-10 Score=95.55 Aligned_cols=83 Identities=22% Similarity=0.243 Sum_probs=69.4
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..++++|+|.|+-.. +. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 43 ~~~~~~l~V~nLp~~--~t---e~~L~~~F~~~G~I~~v~i~~d~~tg---~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLY--TT---ERDLREVFSKYGPIADVSIVYDQQSR---RSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp CCCSSCBCEETCTTS--CC---HHHHHHHHTTTSCEEEEEEECCSSSS---CCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCC--CC---HHHHHHHHHhcCCeEEEEEEecCCCC---ccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 457889999997432 22 45788999999999999998764432 46799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 115 g~~l~V~~a~~ 125 (129)
T 2kxn_B 115 GRRIRVDFSIT 125 (129)
T ss_dssp SSCCEESCCSS
T ss_pred CEEEEEEEecC
Confidence 99999998754
No 68
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.03 E-value=1.4e-09 Score=87.54 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=69.3
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-. ++. ++||++.|++||.|.+|.|..+.. ....|++||+|.+.++|.+|+..|||..|.
T Consensus 12 ~~~~~~l~v~nLp~--~~t---~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 82 (105)
T 2dnh_A 12 GGRDRKLFVGMLNK--QQS---EEDVLRLFQPFGVIDECTVLRGPD----GSSKGCAFVKFSSHTEAQAAIHALHGSQTM 82 (105)
T ss_dssp CCCCCEEEEESCCT--TCC---HHHHHHHHTTTSCEEEEEEEECSS----SCEEEEEEEEESSHHHHHHHHHHHSSCCCC
T ss_pred CCCCCEEEEeCCCC--CCC---HHHHHHHHHhcCCeEEEEEEECCC----CCcCcEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 34688999999742 222 567889999999999999997642 245799999999999999999999999998
Q ss_pred C---eEEEEEecccc
Q 016857 352 G---RVVRATFYDEE 363 (381)
Q Consensus 352 G---R~V~a~fy~ee 363 (381)
| +.|.+.|....
T Consensus 83 gg~~~~l~V~~a~~~ 97 (105)
T 2dnh_A 83 PGASSSLVVKFADTD 97 (105)
T ss_dssp TTCSSCCEEEESCSS
T ss_pred CCCCccEEEEECccC
Confidence 8 99999998653
No 69
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=2.6e-09 Score=87.74 Aligned_cols=82 Identities=9% Similarity=0.118 Sum_probs=68.3
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+.+.|+|.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..||+ .|+
T Consensus 14 ~~~~~~l~V~nlp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYH--T---TDASLRKYFEGFGDIEEAVVITDRQTG---KSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp SCSSSEEEEECCCSS--C---CHHHHHHHHHTTSCEEEEEESCCSSSC---CCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHHhCCCeeEEEEEEcCCCC---ccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 346789999997432 2 256788999999999999998764432 4679999999999999999999999 899
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 85 g~~l~V~~a~~ 95 (116)
T 2cqd_A 85 GRKANVNLAYL 95 (116)
T ss_dssp TEECEEEESTT
T ss_pred CEEEEEEEccc
Confidence 99999999854
No 70
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=1.5e-09 Score=89.28 Aligned_cols=80 Identities=23% Similarity=0.377 Sum_probs=66.7
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhh--CCCe
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDL--DGRF 349 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~L--nGR~ 349 (381)
..++++|++.|+-. ++ -++||++.|++||.|.+|.|... +|++||+|++.++|.+|+..| ++..
T Consensus 12 ~~p~~~l~V~nLp~--~~---te~~L~~~F~~fG~v~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (101)
T 2cq1_A 12 GAPSRVLHIRKLPG--EV---TETEVIALGLPFGKVTNILMLKG---------KNQAFLELATEEAAITMVNYYSAVTPH 77 (101)
T ss_dssp SSCCSEEEEESCCT--TC---CHHHHHHTTTTTSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred CCCCCEEEEeCCCC--CC---CHHHHHHHHHhcCCEEEEEEECC---------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 46899999999763 22 25678899999999999998742 589999999999999999987 5788
Q ss_pred eCCeEEEEEecccccc
Q 016857 350 FGGRVVRATFYDEERF 365 (381)
Q Consensus 350 F~GR~V~a~fy~ee~F 365 (381)
++||.|.+.|......
T Consensus 78 ~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 78 LRNQPIYIQYSNHKEL 93 (101)
T ss_dssp ETTEECEEEECSCSSC
T ss_pred ECCcEEEEEEcCcccC
Confidence 9999999999875443
No 71
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=8.3e-10 Score=88.73 Aligned_cols=81 Identities=19% Similarity=0.291 Sum_probs=68.6
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++.|+|.|+-.. +. ++||++.|++||.|.+|.|..+ . ....|++||+|.+.++|.+|+..|||..|+
T Consensus 12 ~~~~~~l~V~nlp~~--~t---~~~l~~~F~~~G~i~~v~i~~~--~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDG--ID---DERLRKAFSPFGTITSAKVMME--G---GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp CSSCCCEEEECCCTT--CC---HHHHHHTTTTTSCEEEEEEEEC--S---SSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCC--CC---HHHHHHHHHhcCCEEEEEEEcC--C---CCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 347889999997432 22 4678899999999999999875 1 246799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 82 g~~l~V~~a~~ 92 (103)
T 2d9p_A 82 TKPLYVALAQR 92 (103)
T ss_dssp SSBCEEEECSS
T ss_pred CcEEEEEEecc
Confidence 99999999865
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-09 Score=87.30 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=69.0
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCee-EEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVT-RVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~-~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
..+++.|++.|+-.. +. ++||++.|++||.|. +|.|..+...+ ...|++||+|.+.++|.+|+..|||..|
T Consensus 6 ~~~~~~l~V~nLp~~--~t---~~~l~~~F~~~G~i~~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (99)
T 2div_A 6 SGMAASLWMGDLEPY--MD---ENFISRAFATMGETVMSVKIIRNRLTG---IPAGYCFVEFADLATAEKCLHKINGKPL 77 (99)
T ss_dssp CSSSSEEEECSCCTT--CC---HHHHHHHHHHTTCCCCEEEEEECSSSC---CEEEEEEEECSCHHHHHHHHHTTTTSEE
T ss_pred CCCccEEEEeCCCCC--CC---HHHHHHHHHHhCCcceEEEEeecCCCC---CcCCEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 347889999997422 22 567889999999999 99998765432 4679999999999999999999999999
Q ss_pred CCeE----EEEEeccc
Q 016857 351 GGRV----VRATFYDE 362 (381)
Q Consensus 351 ~GR~----V~a~fy~e 362 (381)
+|+. |++.|...
T Consensus 78 ~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 78 PGATPAKRFKLNYATY 93 (99)
T ss_dssp SSCSSCEECCEEETTC
T ss_pred CCCCcceeEEEeecCC
Confidence 9999 99988754
No 73
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.02 E-value=2.2e-09 Score=86.40 Aligned_cols=81 Identities=15% Similarity=0.283 Sum_probs=68.0
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-.. + -++||++.|++|| |.+|.|+.+...+ ...|++||+|.+.++|.+|+ .|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~--~---t~~~l~~~F~~~g-i~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 81 (103)
T 2dng_A 12 TEPPYTAYVGNLPFN--T---VQGDIDAIFKDLS-IRSVRLVRDKDTD---KFKGFCYVEFDEVDSLKEAL-TYDGALLG 81 (103)
T ss_dssp SSSCEEEEEESCCTT--C---CHHHHHHHTTTSC-EEEEEEEECSSSC---SEEEEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCeEEEEeCCCCC--C---CHHHHHHHHHhCC-ceEEEEeecCCCC---ccceEEEEEECCHHHHHHHH-hhCCCeEC
Confidence 457899999997422 2 2567889999997 9999999865432 46799999999999999999 99999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.+...
T Consensus 82 g~~l~V~~a~~ 92 (103)
T 2dng_A 82 DRSLRVDIAEG 92 (103)
T ss_dssp TEECEEEECCC
T ss_pred CeEEEEEEecC
Confidence 99999999865
No 74
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.02 E-value=9.7e-10 Score=88.61 Aligned_cols=84 Identities=14% Similarity=0.169 Sum_probs=69.6
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee-
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF- 350 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F- 350 (381)
...++.|++.|+-. ++. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..+
T Consensus 10 ~~~~~~l~V~nlp~--~~t---~~~l~~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (106)
T 2dgp_A 10 DHDAIKLFIGQIPR--NLD---EKDLKPLFEEFGKIYELTVLKDRFTG---MHKGCAFLTYCERESALKAQSALHEQKTL 81 (106)
T ss_dssp CTTCEEEEEESCCT--TCC---HHHHHHHHHHHSCCCEEECCCCSSSC---SCCSEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CCCCCEEEEeCCCC--CCC---HHHHHHHHHhcCCeeEEEEEecCCCC---CcceEEEEEECCHHHHHHHHHHhcCCccc
Confidence 34688999999742 222 45788999999999999998764432 4679999999999999999999999987
Q ss_pred --CCeEEEEEecccc
Q 016857 351 --GGRVVRATFYDEE 363 (381)
Q Consensus 351 --~GR~V~a~fy~ee 363 (381)
+|+.|.+.|....
T Consensus 82 ~~~g~~l~v~~a~~~ 96 (106)
T 2dgp_A 82 PGMNRPIQVKPADSE 96 (106)
T ss_dssp TTCSSCCEEEECCCC
T ss_pred CCCCceEEEEECCcc
Confidence 8999999998653
No 75
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.02 E-value=1.2e-09 Score=96.88 Aligned_cols=82 Identities=11% Similarity=0.197 Sum_probs=69.6
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..+++|+|.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||+.|+|
T Consensus 123 ~~~~~l~v~nlp~~--~---t~~~l~~~f~~~G~v~~v~i~~~~~~g---~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 194 (216)
T 2qfj_A 123 RAFNRIYVASVHQD--L---SDDDIKSVFEAFGKIKSATLARDPTTG---KHKGYGFIEYEKAQSSQDAVSSMNLFDLGG 194 (216)
T ss_dssp TTSCEEEEECCCTT--C---CHHHHHHHHTTSSCEEEEEEEECTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCcEEEEeCCCCc--C---CHHHHHHHHhccCCeeEEEEEecCCCC---CcCceEEEEecCHHHHHHHHHHccCCEeCC
Confidence 36789999997532 2 257899999999999999999864432 457999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.+.|...
T Consensus 195 ~~i~V~~a~~ 204 (216)
T 2qfj_A 195 QYLRVGKAVT 204 (216)
T ss_dssp SBCEEEECSS
T ss_pred cEEEEEEecC
Confidence 9999999854
No 76
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.02 E-value=2.3e-09 Score=86.50 Aligned_cols=75 Identities=21% Similarity=0.463 Sum_probs=64.6
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.++++|+|.|+-.. + -++||++.|++||.|.+|.|.+ +++||+|.+.++|.+|+..|||..|+|
T Consensus 9 ~~~~~l~V~nl~~~--~---t~~~l~~~F~~~G~i~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g 72 (103)
T 2dgu_A 9 AKVKVLFVRNLANT--V---TEEILEKAFSQFGKLERVKKLK-----------DYAFIHFDERDGAVKAMEEMNGKDLEG 72 (103)
T ss_dssp CCCCCEEEECCCTT--C---CHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCEEEEEEEC-----------CEEEEEeCCHHHHHHHHHHHCCCccCC
Confidence 46789999997532 2 2467889999999999999873 589999999999999999999999999
Q ss_pred eEEEEEecccc
Q 016857 353 RVVRATFYDEE 363 (381)
Q Consensus 353 R~V~a~fy~ee 363 (381)
+.|.+.|....
T Consensus 73 ~~l~v~~a~~~ 83 (103)
T 2dgu_A 73 ENIEIVFAKPP 83 (103)
T ss_dssp EEEEEEECCCC
T ss_pred CEEEEEEcCCC
Confidence 99999999653
No 77
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.02 E-value=1.5e-09 Score=91.20 Aligned_cols=80 Identities=23% Similarity=0.329 Sum_probs=66.8
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|+|.|+-.. +. ++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 61 ~~~~~l~v~nlp~~--~~---~~~l~~~f~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 61 TTKRVLYVGGLAEE--VD---DKVLHAAFIPFGDITDIQIPLDYETE---KHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp SSCCEEEEECCCTT--CC---HHHHHHHHGGGSCEEEEECCCCTTTC---CCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCcEEEEEeCCCC--CC---HHHHHHHHHhcCCEEEEEEeecCCCC---CcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46889999997432 22 46788999999999999998764432 467999999999999999999999999999
Q ss_pred eEEEEEec
Q 016857 353 RVVRATFY 360 (381)
Q Consensus 353 R~V~a~fy 360 (381)
+.|++.|.
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999873
No 78
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.8e-09 Score=87.04 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=68.3
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-.. +. ++||++.|++|| |.+|.|+.+... .....|++||+|.+.++|.+|+ .|||..|+
T Consensus 12 ~~~~~~l~V~nlp~~--~t---~~~l~~~F~~~G-i~~v~i~~~~~~--~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYD--VT---EESIKEFFRGLN-ISAVRLPREPSN--PERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp SSSCEEEEEESCCSS--CC---HHHHHHHTTTSC-EEEEECCBCSSC--TTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCCCEEEEeCCCCc--CC---HHHHHHHHHHCC-ceEEEEecCCCC--CCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 457899999997422 22 467889999999 999999876432 0245799999999999999999 99999999
Q ss_pred CeEEEEEecccc
Q 016857 352 GRVVRATFYDEE 363 (381)
Q Consensus 352 GR~V~a~fy~ee 363 (381)
|+.|.+.|....
T Consensus 83 g~~l~V~~a~~~ 94 (104)
T 1wi8_A 83 NKRIRVDVADQA 94 (104)
T ss_dssp TEECEEEECCCC
T ss_pred CcEEEEEEccCC
Confidence 999999998653
No 79
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=2.1e-09 Score=84.76 Aligned_cols=75 Identities=24% Similarity=0.384 Sum_probs=64.8
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|++.|+-. ++ -++||++.|++||.|.+|.|.+ +++||+|.+.++|.+|+..|||..|+
T Consensus 7 ~~~~~~l~V~nLp~--~~---t~~~l~~~F~~~G~v~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 7 GKASTKLHVGNISP--TC---TNQELRAKFEEYGPVIECDIVK-----------DYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp CCSSEEEEEESCCS--SC---CHHHHHHHHHTTSCCCEEEECS-----------SEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCC--CC---CHHHHHHHHHhcCCeEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 45788999999842 22 2567889999999999999973 48999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 71 g~~l~V~~a~~ 81 (92)
T 2dgt_A 71 GKRMHVQLSTS 81 (92)
T ss_dssp TEEEEEEESSC
T ss_pred CcEEEEEEccC
Confidence 99999999864
No 80
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.2e-09 Score=89.42 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=67.6
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.++.|+|.|+-.. +. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+ .|||..|+|+
T Consensus 24 ~~~~l~V~nlp~~--~t---~~~l~~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 94 (114)
T 2cq4_A 24 DARTVFCMQLAAR--IR---PRDLEDFFSAVGKVRDVRIISDRNSR---RSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV 94 (114)
T ss_dssp HHTEEEEESCCTT--CC---HHHHHHHHTTTSCEEEEEECCSCCSS---SCCCCEEEEESCGGGHHHHH-HHTTEEETTE
T ss_pred CCCEEEEeCCCCC--CC---HHHHHHHHHhCCCEeEEEEEecCCCC---ccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe
Confidence 4678999997422 22 46788999999999999998754432 45799999999999999999 9999999999
Q ss_pred EEEEEecccc
Q 016857 354 VVRATFYDEE 363 (381)
Q Consensus 354 ~V~a~fy~ee 363 (381)
.|.+.+....
T Consensus 95 ~l~V~~a~~~ 104 (114)
T 2cq4_A 95 PIIVQASQAE 104 (114)
T ss_dssp EEEEEEHHHH
T ss_pred EEEEEecCCC
Confidence 9999998653
No 81
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.2e-09 Score=89.50 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=68.2
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++.|++.|+-.. + -++||++.|++||.|.+|.|..+.. ...|++||+|.+.++|.+|+..|||..|+
T Consensus 26 ~~~~~~l~V~nLp~~--~---te~~l~~~F~~~G~i~~v~i~~~~~-----~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 26 KSQPKRLHVSNIPFR--F---RDPDLRQMFGQFGKILDVEIIFNER-----GSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp TTCCCEEEEESCCTT--C---CHHHHHHHGGGTCCCSCEEECCBTT-----BCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCc--C---CHHHHHHHHHhcCCEEEEEEEECCC-----CCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 346889999997422 2 2567889999999999999987532 25799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.+...
T Consensus 96 g~~l~V~~a~~ 106 (109)
T 2err_A 96 GRKIEVNNATA 106 (109)
T ss_dssp TEECEEEECCC
T ss_pred CEEEEEEECCC
Confidence 99999998754
No 82
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.00 E-value=2.2e-09 Score=86.39 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=64.5
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|++.|+-.. ++ -++||++.|++||.|.+|.|. .|++||+|.+.++|.+|+..|||..|+
T Consensus 19 ~~~~~~l~V~nLp~~-~~---t~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLK-NV---SKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp CCTTCEEEEESCCSS-CC---CHHHHHHHHGGGSCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCCCCEEEEeCCCcc-cC---CHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 457899999997531 22 246788999999999999994 389999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 84 g~~l~V~~a~~ 94 (97)
T 2xnq_A 84 GKKLILEVSSS 94 (97)
T ss_dssp TEECEEEECCC
T ss_pred CEEEEEEecCC
Confidence 99999998743
No 83
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.00 E-value=2.4e-09 Score=88.82 Aligned_cols=80 Identities=14% Similarity=0.250 Sum_probs=67.4
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.++.|+|.|+-.. +. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+ .|||..|+|+
T Consensus 35 ~~~~l~V~nlp~~--~t---~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 105 (124)
T 2jwn_A 35 DKRSVYVGNVDYG--ST---AQDLEAHFSSCGSINRITILCDKFSG---HPKGYAYIEFAERNSVDAAV-AMDETVFRGR 105 (124)
T ss_dssp HHTEEEEEEECTT--CC---HHHHHHHHHTTSCEEEEEEEEECTTS---SCEEEEEEEESSHHHHHHHH-TTTTCEETTE
T ss_pred CCCEEEEeCCCCC--CC---HHHHHHHHHhcCCEEEEEEEecCCCC---CcccEEEEEECCHHHHHHHH-hcCCCeECCe
Confidence 4678999997422 22 56788999999999999999865433 46899999999999999999 8999999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.+.+...
T Consensus 106 ~l~V~~a~~ 114 (124)
T 2jwn_A 106 TIKVLPKRT 114 (124)
T ss_dssp ECEEEESSC
T ss_pred EEEEEECCC
Confidence 999999764
No 84
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.4e-09 Score=88.74 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=68.9
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCee--------EEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHH
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVT--------RVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALI 343 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~--------~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~ 343 (381)
...++.|+|.|+-. ++. ++||++.|++||.|. .|.|+.+...+ ...|++||+|.+.++|.+|+.
T Consensus 12 ~~~~~~l~V~nLp~--~~t---~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 12 DSDNSAIYVQGLND--SVT---LDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETG---KPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp CCCCCEEEEECCCT--TCC---HHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTC---SBCSEEEEEBSSHHHHHHHHH
T ss_pred CCCCCEEEEcCCCC--CCC---HHHHHHHHHhcCCEeEccccCccCEEEEEeCCCC---CeeeEEEEEECCHHHHHHHHH
Confidence 34688999999752 222 467889999999999 68888754332 467999999999999999999
Q ss_pred hhCCCeeCCeEEEEEeccc
Q 016857 344 DLDGRFFGGRVVRATFYDE 362 (381)
Q Consensus 344 ~LnGR~F~GR~V~a~fy~e 362 (381)
.|||..|+|+.|++.+...
T Consensus 84 ~l~g~~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 84 WFDGKDFQGSKLKVSLARK 102 (113)
T ss_dssp HHTTCEETTEECEEECSSC
T ss_pred HcCCCccCCCEEEEEECCC
Confidence 9999999999999999865
No 85
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.99 E-value=1.1e-09 Score=87.01 Aligned_cols=81 Identities=25% Similarity=0.319 Sum_probs=66.6
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..+++|++.|+- .++ -++||++.|++||.|..+.|......+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 13 ~~~~~l~v~nLp--~~~---t~~~l~~~F~~~G~v~~~~~~~~~~~g---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (98)
T 2cqp_A 13 PGPTIIKVQNMP--FTV---SIDEILDFFYGYQVIPGSVCLKYNEKG---MPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (98)
T ss_dssp CSSEEEEEESCC--TTC---CHHHHHHHTTTSCCCTTTCEEEECSSS---CEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred CCCCEEEEeCCC--CCC---CHHHHHHHHHHcCCccceEEEEECCCC---CeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 457889999974 222 246788999999999887777654332 457999999999999999999999999999
Q ss_pred eEEEEEecc
Q 016857 353 RVVRATFYD 361 (381)
Q Consensus 353 R~V~a~fy~ 361 (381)
|.|.+.+..
T Consensus 85 ~~l~V~~a~ 93 (98)
T 2cqp_A 85 RKVKLVLGS 93 (98)
T ss_dssp EECEEEESS
T ss_pred eEEEEEEcC
Confidence 999999875
No 86
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.4e-09 Score=87.43 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=69.5
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhc-cCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCe-e
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAK-YGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRF-F 350 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsK-YG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~-F 350 (381)
.+++.|++.|+-.. + -++||++.|++ ||.|.+|.|+.+. .+ ...|++||+|.+.++|.+|+..|||.. |
T Consensus 7 ~~~~~l~V~nLp~~--~---t~~~l~~~F~~~~G~v~~v~i~~~~-~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 77 (104)
T 2dhg_A 7 GPEYSLFVGDLTPD--V---DDGMLYEFFVKVYPSCRGGKVVLDQ-TG---VSKGYGFVKFTDELEQKRALTECQGAVGL 77 (104)
T ss_dssp SCCCCEEEECCCTT--C---CHHHHHHHHHHHCTTEEEEEEEECT-TC---CEEEEEEEEESCHHHHHHHHHHTTTCCSS
T ss_pred CCCcEEEEeCCCCC--C---CHHHHHHHHHHhCCCeEEEEEEECC-CC---CccceEEEEECCHHHHHHHHHHccCCccc
Confidence 46788999997532 2 24678899999 9999999999864 32 468999999999999999999999999 9
Q ss_pred CCeEEEEEeccccc
Q 016857 351 GGRVVRATFYDEER 364 (381)
Q Consensus 351 ~GR~V~a~fy~ee~ 364 (381)
+|+.|.+.+.....
T Consensus 78 ~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 78 GSKPVRLSVAIPKA 91 (104)
T ss_dssp SSSCCCCCBCCCCC
T ss_pred CCEeEEEEEccCCC
Confidence 99999999986543
No 87
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=2.6e-09 Score=85.19 Aligned_cols=75 Identities=12% Similarity=0.235 Sum_probs=64.3
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|++.|+ ++. ++||++.|++||.|.+|.|.. ..|++||+|.+.++|.+|+..|||..|+|
T Consensus 13 ~~~~~l~V~n~----~~t---~~~l~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 76 (97)
T 1x5p_A 13 RKGNTLYVYGE----DMT---PTLLRGAFSPFGNIIDLSMDP---------PRNCAFVTYEKMESADQAVAELNGTQVES 76 (97)
T ss_dssp CCCSEEEEECS----SCC---HHHHHHHHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCEEEEcCC----CCC---HHHHHHHHhhCCCEEEEEecC---------CCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 36788999993 232 567889999999999999952 35899999999999999999999999999
Q ss_pred eEEEEEecccc
Q 016857 353 RVVRATFYDEE 363 (381)
Q Consensus 353 R~V~a~fy~ee 363 (381)
+.|.+.|....
T Consensus 77 ~~l~v~~a~~~ 87 (97)
T 1x5p_A 77 VQLKVNIARKQ 87 (97)
T ss_dssp EEEEEECCSSC
T ss_pred eEEEEEECCCC
Confidence 99999998653
No 88
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.99 E-value=8e-10 Score=91.39 Aligned_cols=78 Identities=17% Similarity=0.257 Sum_probs=65.2
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC--e
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR--F 349 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR--~ 349 (381)
..++++|.+.|+-. .++ -++||++.|++||.|.+|.|.+. .|++||+|++.++|.+|+..|||. .
T Consensus 12 ~~p~~~l~V~nLp~-~~~---te~dL~~lF~~fG~V~~v~i~~~---------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 78 (102)
T 1x4d_A 12 VETRRVVHIMDFQR-GKN---LRYQLLQLVEPFGVISNHLILNK---------INEAFIEMATTEDAQAAVDYYTTTPAL 78 (102)
T ss_dssp CCCCCEEEEESCCC-SSS---HHHHHHTTTGGGSCEEEEEECSS---------SSCEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred CCCCCEEEEeCCCC-CcC---CHHHHHHHHHhcCCEEEEEEEcC---------CCEEEEEECCHHHHHHHHHHHcCCCce
Confidence 45899999999763 122 35678899999999999999752 378999999999999999999865 5
Q ss_pred eCCeEEEEEeccc
Q 016857 350 FGGRVVRATFYDE 362 (381)
Q Consensus 350 F~GR~V~a~fy~e 362 (381)
|+||.|.+.|...
T Consensus 79 ~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 79 VFGKPVRVHLSQK 91 (102)
T ss_dssp ETTEECEEEEECC
T ss_pred ECCcEEEEEECCC
Confidence 9999999999864
No 89
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.98 E-value=3.6e-09 Score=91.52 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=64.3
Q ss_pred CCCceEEE--EecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceE-EEEEeCCHHHHHHHHHhhCCC
Q 016857 272 GPPTRVLL--LRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVR-IFVQFERSEQTTKALIDLDGR 348 (381)
Q Consensus 272 g~pSrVVv--L~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~Gr-VFVeF~d~esA~kAv~~LnGR 348 (381)
..+++|+. +.|+... +. +++|++.|++||.|.+|.|+... .|+ +||+|.+.++|.+|++.|||+
T Consensus 23 ~~ps~VL~I~V~NL~~~--vt---e~~L~~lFs~yG~V~~V~i~~~~--------~gfqAFVef~~~~~A~~Ai~~LnG~ 89 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYP--VT---LDVLHQIFSKFGTVLKIITFTKN--------NQFQALLQYADPVSAQHAKLSLDGQ 89 (130)
T ss_dssp --CCSEEEEEEESCCSC--CC---HHHHHHHHTTSSCEEEEEEEEET--------TEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCceEEEEECCCCCC--CC---HHHHHHHHhCcCCEEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHcCCC
Confidence 45788877 8888533 22 44688999999999999998632 376 999999999999999999999
Q ss_pred eeCC--eEEEEEecccc
Q 016857 349 FFGG--RVVRATFYDEE 363 (381)
Q Consensus 349 ~F~G--R~V~a~fy~ee 363 (381)
.|.| +.|++.|....
T Consensus 90 ~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 90 NIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEETTEEEEEEEECSCS
T ss_pred eecCCCcEEEEEecCCC
Confidence 9988 99999998654
No 90
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=1.5e-09 Score=91.92 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=66.7
Q ss_pred cCCCCCceEEEEec--ccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC
Q 016857 269 NFNGPPTRVLLLRN--MVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD 346 (381)
Q Consensus 269 ~~~g~pSrVVvL~N--Mv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln 346 (381)
.....|++.|++.| +-.. + -++||++.|++||.|.+|.|+. .+|++||+|.+.++|.+|+..||
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~--~---te~~L~~~F~~fG~v~~v~i~~---------~rgfaFV~f~~~~~A~~Ai~~ln 84 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNG--V---SRNQLLPVLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLN 84 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGT--C---CHHHHHHHHHHHSCEEEEECCT---------TCSCEEEEESSHHHHHHHHHHTT
T ss_pred cCCCCCCCEEEEECCCCCCC--C---CHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhC
Confidence 34456899999965 5321 1 2468889999999999998863 25899999999999999999999
Q ss_pred CCee-----CCeEEEEEecccccc
Q 016857 347 GRFF-----GGRVVRATFYDEERF 365 (381)
Q Consensus 347 GR~F-----~GR~V~a~fy~ee~F 365 (381)
|+.+ .|+.|.+.|...--|
T Consensus 85 G~~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 85 GKEVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp TCEEECTTSCEEECEEEEESCCCC
T ss_pred CCEEccccCCCcEEEEEecccCcc
Confidence 9998 789999999865433
No 91
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=2.6e-09 Score=83.91 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=64.8
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|++.|+-. ++. ++||++.|++||.|.+|.|. .|++||+|.+.++|.+|+..|||..|+
T Consensus 5 ~~~~~~l~V~nlp~--~~t---~~~l~~~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 5 SSGMVKLFIGNLPR--EAT---EQEIRSLFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLH 68 (90)
T ss_dssp SSCCEEEEEESCCS--SCC---HHHHHHHHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCeEEEEeCCCC--CCC---HHHHHHHHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccC
Confidence 34788999999743 222 46788999999999999997 278999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 69 g~~l~v~~a~~ 79 (90)
T 2dnq_A 69 GVNINVEASKN 79 (90)
T ss_dssp SCBCEEECSSC
T ss_pred CcEEEEEECCC
Confidence 99999999865
No 92
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.98 E-value=1.9e-09 Score=85.84 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=64.9
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC-
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG- 351 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~- 351 (381)
.+++.|++.|+-.. +. ++||++.|++||.|.+|.|... .|++||+|.+.++|.+|+..|||..|+
T Consensus 15 ~~~~~l~V~nlp~~--~t---~~~l~~~F~~~G~v~~v~~~~~---------~g~afV~f~~~~~A~~A~~~l~g~~~~~ 80 (97)
T 1why_A 15 NPTTRLWVGGLGPN--TS---LAALAREFDRFGSIRTIDHVKG---------DSFAYIQYESLDAAQAACAKMRGFPLGG 80 (97)
T ss_dssp CCCSCEEEECCCSS--CC---HHHHHHHHHTTSCEEEEEECSS---------SCCEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEeCCCCC--CC---HHHHHHHHHhcCCeeEEEEeCC---------CCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 47789999997532 22 4678899999999999998742 589999999999999999999999999
Q ss_pred -CeEEEEEeccc
Q 016857 352 -GRVVRATFYDE 362 (381)
Q Consensus 352 -GR~V~a~fy~e 362 (381)
|+.|++.|...
T Consensus 81 ~g~~l~V~~a~~ 92 (97)
T 1why_A 81 PDRRLRVDFAKS 92 (97)
T ss_dssp SSCBCEEEECCC
T ss_pred CCcEEEEEECCC
Confidence 99999999754
No 93
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.97 E-value=6.4e-10 Score=93.73 Aligned_cols=88 Identities=19% Similarity=0.329 Sum_probs=68.7
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC--CCe
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD--GRF 349 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln--GR~ 349 (381)
..++++|+|.|+-... + -++||++.|++||.|.+|.|.+ .+|++||+|++.++|.+|+..|| +..
T Consensus 22 ~~p~~~l~V~NLp~~~-~---te~~L~~lF~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~ 88 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSG-Y---SDSAVLKLAEPYGKIKNYILMR---------MKSQAFIEMETREDAMAMVDHCLKKALW 88 (112)
T ss_dssp SCCCCEEEEESCCCSS-C---CSHHHHTTTTTTSCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEeCCCCcc-C---CHHHHHHHHHhcCCEEEEEEec---------CCCEEEEEECCHHHHHHHHHHhccCCce
Confidence 4589999999976420 1 1357889999999999999974 35899999999999999999886 456
Q ss_pred eCCeEEEEEecccccccccccCCCC
Q 016857 350 FGGRVVRATFYDEERFSKNELAPLP 374 (381)
Q Consensus 350 F~GR~V~a~fy~ee~F~~~~l~p~~ 374 (381)
|+||.|.+.|... .....+.|.+
T Consensus 89 l~Gr~l~V~~a~~--~~~~~~~~~~ 111 (112)
T 1x4f_A 89 FQGRCVKVDLSEK--YKKLVSGPSS 111 (112)
T ss_dssp SSSSCCEEEEECS--CSSSSCCCCC
T ss_pred ECCEEEEEEECcc--ccccccCCCC
Confidence 9999999999753 3333445443
No 94
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=3.3e-09 Score=84.74 Aligned_cols=74 Identities=24% Similarity=0.436 Sum_probs=64.0
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhcc--CCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKY--GTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKY--G~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
.++++|+|.|+-.. +. ++||++.|++| |.|.+|.+. .|++||+|.+.++|.+|+..|||..|
T Consensus 13 ~~~~~l~V~nLp~~--~t---~~~l~~~F~~~g~g~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 13 SSVKILYVRNLMLS--TS---EEMIEKEFNNIKPGAVERVKKI-----------RDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp SCCCEEEEESCCTT--CC---HHHHHHHHHTTSTTCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred CCcCEEEEeCCCCC--CC---HHHHHHHHHhcCCcceEEEEEe-----------CCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 47889999997532 22 46788999999 999999885 37999999999999999999999999
Q ss_pred CCeEEEEEeccc
Q 016857 351 GGRVVRATFYDE 362 (381)
Q Consensus 351 ~GR~V~a~fy~e 362 (381)
+|+.|++.|...
T Consensus 77 ~g~~l~v~~a~~ 88 (99)
T 2cpd_A 77 DGSPIEVTLAKP 88 (99)
T ss_dssp TTEEEEEECCCC
T ss_pred CCcEEEEEECCC
Confidence 999999999865
No 95
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=2.4e-09 Score=84.20 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=64.3
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|++.|+-.. + -++||++.|++||.|.+|.|.+ +++||+|.+.++|.+|+..|||..|+|
T Consensus 7 ~~~~~l~V~nlp~~--~---t~~~l~~~F~~~G~v~~~~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 7 GNTWKIFVGNVSAA--C---TSQELRSLFERRGRVIECDVVK-----------DYAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp CCSCCEEEESCCTT--C---CHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCC--C---CHHHHHHHHHcCCCEEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46788999997532 2 2467889999999999999973 479999999999999999999999999
Q ss_pred eEEEEEecccc
Q 016857 353 RVVRATFYDEE 363 (381)
Q Consensus 353 R~V~a~fy~ee 363 (381)
+.|.+.|....
T Consensus 71 ~~l~v~~a~~~ 81 (90)
T 2dnp_A 71 KRINVELSTKG 81 (90)
T ss_dssp EECEEEESCCC
T ss_pred cEEEEEECCCC
Confidence 99999998653
No 96
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.96 E-value=3.9e-09 Score=92.46 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=68.6
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.++++|+|.||-.. + -+++|++.|++||.|..|.|+.+...+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 70 ~~~~~l~V~nLp~~--~---t~~~L~~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 70 VEGWILFVTSIHEE--A---QEDEIQEKFCDYGEIKNIHLNLDRRTG---FSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp C-CEEEEEESCCTT--C---CHHHHHHHHGGGSCEEEEEEEECTTTS---SEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCC--C---CHHHHHHHhhcCCCEEEEEEEecCCCC---cEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46789999997532 2 256788999999999999999764432 457999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.+.|...
T Consensus 142 ~~l~V~~a~~ 151 (165)
T 1rk8_A 142 QTIQVDWCFV 151 (165)
T ss_dssp EECEEEESEE
T ss_pred EEEEEEEecC
Confidence 9999999854
No 97
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.96 E-value=2.3e-09 Score=91.79 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=67.4
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.++.|++.|+-..- -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+||
T Consensus 93 ~~~~l~v~nlp~~~-----t~~~l~~~f~~~G~v~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (172)
T 2g4b_A 93 GAHKLFIGGLPNYL-----NDDQVKELLTSFGPLKAFNLVKDSATG---LSKGYAFCEYVDINVTDQAIAGLNGMQLGDK 164 (172)
T ss_dssp TTTCEEEECCCTTC-----CHHHHHHHHHTTSCEEEEEEEECTTTC---SEEEEEEEEESSTTHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEEcCCCcC-----CHHHHHHHHHhcCCceEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHcCCCEECCe
Confidence 46788899975422 256889999999999999999864332 4579999999999999999999999999999
Q ss_pred EEEEEecc
Q 016857 354 VVRATFYD 361 (381)
Q Consensus 354 ~V~a~fy~ 361 (381)
.|.+.|.+
T Consensus 165 ~l~V~~As 172 (172)
T 2g4b_A 165 KLLVQRAS 172 (172)
T ss_dssp ECEEEECC
T ss_pred EEEEEeCC
Confidence 99999863
No 98
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.7e-09 Score=92.10 Aligned_cols=80 Identities=23% Similarity=0.364 Sum_probs=67.6
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCC--Ce
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDG--RF 349 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnG--R~ 349 (381)
..++++|+|.|+-.. + -++||++.|++||.|.+|.|... +|++||+|++.++|.+|+..||| ..
T Consensus 28 ~~ps~~LfVgNLp~~--v---te~dL~~lF~~fG~V~~v~i~~~---------kG~AFVeF~~~e~A~~Ai~~l~~~~~~ 93 (119)
T 2ad9_A 28 GVPSRVIHIRKLPID--V---TEGEVISLGLPFGKVTNLLMLKG---------KNQAFIEMNTEEAANTMVNYYTSVTPV 93 (119)
T ss_dssp SSCCSEEEEESCCTT--C---CHHHHHHHHTTTSCCCEEEEEGG---------GTEEEEECSCHHHHHHHHHHHHHHCCC
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCEEEEEEeCC---------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 468999999997632 2 25678899999999999999852 58999999999999999999984 68
Q ss_pred eCCeEEEEEecccccc
Q 016857 350 FGGRVVRATFYDEERF 365 (381)
Q Consensus 350 F~GR~V~a~fy~ee~F 365 (381)
|+||.|.+.|......
T Consensus 94 l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 94 LRGQPIYIQFSNHKEL 109 (119)
T ss_dssp BTTBCCEEEECSSSSC
T ss_pred ECCeEEEEEEccCCCC
Confidence 9999999999865444
No 99
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=2.7e-09 Score=82.50 Aligned_cols=74 Identities=12% Similarity=0.247 Sum_probs=63.5
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhh-CCCeeC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDL-DGRFFG 351 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~L-nGR~F~ 351 (381)
..++.|++.|+-.. + -++||++.|++||.|.+|.|... .|++||+|.+.++|.+|+..| ||..|+
T Consensus 10 ~~~~~l~V~~l~~~--~---t~~~l~~~f~~~G~i~~~~~~~~---------kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 10 KTITTLYVGGLGDT--I---TETDLRNHFYQFGEIRTITVVQR---------QQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp SSCCCEEEECCTTT--S---CHHHHHHHHHTTSCEEEEEEEGG---------GTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCccEEEEcCCCCC--C---CHHHHHHHHHhCCCEeEEEEECC---------CCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 46788999997532 2 25678899999999999999852 589999999999999999999 999999
Q ss_pred CeEEEEEec
Q 016857 352 GRVVRATFY 360 (381)
Q Consensus 352 GR~V~a~fy 360 (381)
|+.|.+.|.
T Consensus 76 g~~l~v~~a 84 (85)
T 2ytc_A 76 GRRLNVKWG 84 (85)
T ss_dssp TEECCEEEC
T ss_pred CCEEEEEec
Confidence 999999874
No 100
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.96 E-value=4.9e-09 Score=89.73 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=63.1
Q ss_pred CCCceEEE--EecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceE-EEEEeCCHHHHHHHHHhhCCC
Q 016857 272 GPPTRVLL--LRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVR-IFVQFERSEQTTKALIDLDGR 348 (381)
Q Consensus 272 g~pSrVVv--L~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~Gr-VFVeF~d~esA~kAv~~LnGR 348 (381)
..|++||. +.|+-.. +. +++|++.|++||.|.+|.|+.. .|+ +||+|.+.++|.+|+..|||.
T Consensus 20 ~~ps~vl~l~V~NL~~~--vt---~~~L~~~Fs~yG~V~~v~i~~~---------~Gf~aFVef~~~~~A~~A~~~LnG~ 85 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYP--IT---VDVLYTVCNPVGKVQRIVIFKR---------NGIQAMVEFESVLCAQKAKAALNGA 85 (124)
T ss_dssp CCCCSEEEEEEESCCSC--CC---HHHHHHHHTTTSCEEEEEEEES---------SSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEEEcCcCCC--CC---HHHHHHHHHhcCCEEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 35788865 5786533 22 4578899999999999999752 175 999999999999999999999
Q ss_pred eeCC--eEEEEEecccc
Q 016857 349 FFGG--RVVRATFYDEE 363 (381)
Q Consensus 349 ~F~G--R~V~a~fy~ee 363 (381)
.|.| +.|++.|....
T Consensus 86 ~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 86 DIYAGCCTLKIEYARPT 102 (124)
T ss_dssp CCBTTBSEEEEECCSCS
T ss_pred EecCCCeEEEEEEecCC
Confidence 9987 69999998653
No 101
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.95 E-value=2.7e-09 Score=87.78 Aligned_cols=75 Identities=23% Similarity=0.387 Sum_probs=65.1
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++.|++.|+-. ++. ++||++.|++||.|.+|.|. .|++||+|.+.++|.+|+..|||..|+
T Consensus 28 ~~~~~~l~V~nLp~--~~t---~~~L~~~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 28 ELSNTRLFVRPFPL--DVQ---ESELNEIFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp CCSCSEEEECSSCT--TCC---HHHHHHHHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCC--CCC---HHHHHHHHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45788999999742 222 56788999999999999997 389999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 92 g~~l~V~~a~~ 102 (108)
T 2jvo_A 92 NQPLEVVYSKL 102 (108)
T ss_dssp TEECEEESCSC
T ss_pred CeEEEEEEecC
Confidence 99999999854
No 102
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.95 E-value=1.4e-09 Score=88.41 Aligned_cols=79 Identities=16% Similarity=0.284 Sum_probs=64.4
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCC--eeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC----
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGT--VTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR---- 348 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~--V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR---- 348 (381)
-..|+|.|+-..- -+++|++.|++||. |.+|.|+++...+ ..+|++||+|.+.++|.+|++.|||.
T Consensus 9 m~tlfV~nL~~~~-----tee~L~~~F~~~G~i~v~~v~i~~d~~tg---~srG~aFV~f~~~~~A~~Ai~~lng~~~~~ 80 (95)
T 2lkz_A 9 MDTIILRNIAPHT-----VVDSIMTALSPYASLAVNNIRLIKDKQTQ---QNRGFAFVQLSSAMDASQLLQILQSLHPPL 80 (95)
T ss_dssp CCEEEEESCCTTC-----CHHHHHHHSTTTCCCCGGGEECCCCSSSS---SCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred cCEEEEeCCCCcC-----CHHHHHHHHHhhCCccEEEEEEEecCCCC---CCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence 4579999974322 25688899999995 6789988765433 56899999999999999999999997
Q ss_pred eeCCeEEEEEecc
Q 016857 349 FFGGRVVRATFYD 361 (381)
Q Consensus 349 ~F~GR~V~a~fy~ 361 (381)
.++||.|.+.|..
T Consensus 81 ~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 81 KIDGKTIGVDFAK 93 (95)
T ss_dssp EETTEEEEEEECC
T ss_pred eECCEEEEEEEcc
Confidence 5899999999863
No 103
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=3.3e-09 Score=86.35 Aligned_cols=77 Identities=17% Similarity=0.365 Sum_probs=65.9
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
....+.|++.|+-.. + -++||++.|++||.|.+|.|... .|++||+|.+.++|.+|+..|||..|+
T Consensus 22 ~~~~~~l~V~nl~~~--~---t~~~l~~~F~~~G~i~~v~i~~~---------~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 22 SPKNCTVYCGGIASG--L---TDQLMRQTFSPFGQIMEIRVFPE---------KGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp CSSCCEEEEECCSSC--C---CHHHHHHHHHHHSCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEeCCCCC--C---CHHHHHHHHHhcCCeEEEEEeCC---------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 346788999997532 2 24678899999999999999853 589999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 88 g~~l~v~~a~~ 98 (109)
T 1x4g_A 88 GHVVKCYWGKE 98 (109)
T ss_dssp TEECEEECCCC
T ss_pred CcEEEEEecCC
Confidence 99999999865
No 104
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.95 E-value=2.7e-09 Score=91.83 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=69.1
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..++.|+|.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 68 ~~~~~l~v~nl~~~--~---~~~~l~~~F~~~G~v~~~~i~~~~~~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 68 EGMTSLKVDNLTYR--T---SPDTLRRVFEKYGRVGDVYIPRDRYTK---ESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp CBCCEEEEESCCTT--C---CHHHHHHHHHHHSCEEEEECCCCSSCT---TSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred CCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCeEEEEEeecCCCC---ccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999997422 2 256788999999999999998764332 568999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.+.|...
T Consensus 140 ~~l~v~~a~~ 149 (158)
T 2kn4_A 140 RELRVQMARY 149 (158)
T ss_dssp SEEEEEEECC
T ss_pred eEEEEEECCC
Confidence 9999999864
No 105
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=4.6e-10 Score=87.06 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=64.9
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|++.|+-. ++. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 3 ~~~~~l~v~nlp~--~~t---~~~l~~~f~~~G~i~~~~i~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 3 SGSSGLYIRGLQP--GTT---DQDLVKLCQPYGKIVSTKAILDKTTN---KCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCCEEEEESCCT--TCC---HHHHHTTSTTTSCEEEEEEECCSSSC---SCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCCcEEEEeCCCC--CCC---HHHHHHHHHhcCCeEEEEEEecCCCC---CcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 4788999999632 222 46788999999999999998764432 467999999999999999999999999999
Q ss_pred eEEEEEe
Q 016857 353 RVVRATF 359 (381)
Q Consensus 353 R~V~a~f 359 (381)
+.|++.+
T Consensus 75 ~~~~~~~ 81 (85)
T 1x4e_A 75 QMAKQSG 81 (85)
T ss_dssp ESCCSSC
T ss_pred EEEeecC
Confidence 9887654
No 106
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.94 E-value=1.9e-09 Score=86.18 Aligned_cols=76 Identities=22% Similarity=0.307 Sum_probs=65.5
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|++.|+-.. +. ++||++.|++||.|.+|.|.+. .|++||+|.+.++|.+|+..|||..|+|
T Consensus 13 ~~~~~l~V~nlp~~--~t---~~~l~~~F~~~G~i~~v~~~~~---------kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 13 TQRSRLFVGNLPPD--IT---EEEMRKLFEKYGKAGEVFIHKD---------KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp CCTTEEEEESCCTT--CC---HHHHHHHTSTTCCCSEEEEETT---------TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCEEEEeCCCCC--CC---HHHHHHHHhhcCCeEEEEEecC---------CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 46789999997432 22 4678899999999999999742 5899999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|++.|...
T Consensus 79 ~~l~v~~a~~ 88 (99)
T 2cpj_A 79 KQLRVRFACH 88 (99)
T ss_dssp BCCEEEESSC
T ss_pred ceEEEEEcCC
Confidence 9999999865
No 107
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.93 E-value=4.6e-09 Score=89.38 Aligned_cols=80 Identities=16% Similarity=0.278 Sum_probs=66.9
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.++++|++.|+-.. + -++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+..|||+.|+|
T Consensus 87 ~~~~~l~v~nl~~~--~---t~~~l~~~f~~~G~i~~~~i~~~~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 87 IKDTNLYVTNLPRT--I---TDDQLDTIFGKYGSIVQKNILRDKLTG---RPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTTCEEEEESCCTT--C---CHHHHHHHHTSSSCEEEEEEEECTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCEEEeCCCCC--C---CHHHHHHhhhcCCcEEEEEEEEcCCCC---CcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 46788999997532 2 246889999999999999998865332 457999999999999999999999999988
Q ss_pred --eEEEEEec
Q 016857 353 --RVVRATFY 360 (381)
Q Consensus 353 --R~V~a~fy 360 (381)
+.|++.|.
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999873
No 108
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=3.9e-09 Score=83.58 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=64.8
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEE-EEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRV-LIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V-~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.++.|++.|+-. ++. ++||++.|++||.|.+| .|+.+. ..+++||+|.+.++|.+|+..|||..|+|
T Consensus 14 ~~~~l~V~nlp~--~~t---~~~l~~~F~~~G~v~~~~~i~~~~-------~~~~afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 14 RIRKLQIRNIPP--HLQ---WEVLDSLLVQYGVVESCEQVNTDS-------ETAVVNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp SCCCEEEEEECS--SSC---HHHHHHHHHHHSCEEEEEEECCSS-------SSEEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEEcCCC--CCC---HHHHHHHHHhcCCeEEEEEeecCC-------CCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 567899999742 222 56788999999999999 577543 23669999999999999999999999999
Q ss_pred eEEEEEecccc
Q 016857 353 RVVRATFYDEE 363 (381)
Q Consensus 353 R~V~a~fy~ee 363 (381)
|.|.+.|....
T Consensus 82 ~~l~V~~a~~~ 92 (96)
T 2e44_A 82 FTLKVAYIPDE 92 (96)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEEcCcc
Confidence 99999998764
No 109
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.93 E-value=5.4e-09 Score=91.89 Aligned_cols=81 Identities=12% Similarity=0.049 Sum_probs=67.3
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccC--CeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYG--TVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG--~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+.|++.|+-. ++ -++||++.|++|| .|.+|.|+.+...+ ...|++||+|.+.++|.+|+..|||..|+
T Consensus 54 ~~~~lfVgnLp~--~~---te~~L~~~F~~~G~i~v~~v~i~~d~~tg---~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSW--WT---TDQQLIQVIRSIGVYDVVELKFAENRANG---QSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCT--TC---CHHHHHHHHHHTTCCCEEEEEEEECTTTC---CEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCC--CC---CHHHHHHHHHHHCCccEEEEEEEecCCCC---ccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456889999742 22 2467889999999 99999999865443 46899999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
||.|.+.+...
T Consensus 126 Gr~l~V~~a~~ 136 (156)
T 3n9u_C 126 GEKVDVRPATR 136 (156)
T ss_dssp TEECEEEECCH
T ss_pred CeEeEEEEcCC
Confidence 99999999865
No 110
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=2.3e-09 Score=85.52 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=63.9
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|++.|+-.. ++ -++||++.|++||.|.+|.|. .|++||+|.+.++|.+|+..|||..|+|
T Consensus 8 ~~~~~l~V~nlp~~-~~---t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 8 PPKSRLFIGNLPLK-NV---SKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp -CCEEEEEESSTTS-CC---CHHHHHHHHTTTCCCCEEEEE-----------TTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCCEEEEeCCCcc-cC---CHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 47889999997531 22 246788999999999999995 3899999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.+.|...
T Consensus 73 ~~l~V~~a~~ 82 (96)
T 2kvi_A 73 KKLILEVSSS 82 (96)
T ss_dssp TTBCEEEEEC
T ss_pred cEEEEEEcCc
Confidence 9999999854
No 111
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.92 E-value=1.1e-08 Score=79.59 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=64.2
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|++.|+-. ++ -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+.. +|..|+|
T Consensus 9 ~~~~~l~V~nlp~--~~---t~~~l~~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~A~~~-~~~~~~g 79 (87)
T 3s7r_A 9 EDAGKMFVGGLSW--DT---SKKDLKDYFTKFGEVVDCTIKMDPNTG---RSRGFGFILFKDAASVEKVLDQ-KEHRLDG 79 (87)
T ss_dssp SCTTEEEEECCCT--TC---CHHHHHHHHTTTSCEEEEEEEECTTTC---CEEEEEEEEESSTHHHHHHHHS-SCEEETT
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHHHhCCCEEEEEEeecCCCC---ccccEEEEEECCHHHHHHHHHh-CCCEECC
Confidence 4678899999742 22 256788999999999999998765432 4689999999999999999965 8889999
Q ss_pred eEEEEEe
Q 016857 353 RVVRATF 359 (381)
Q Consensus 353 R~V~a~f 359 (381)
+.|.+.+
T Consensus 80 ~~i~v~~ 86 (87)
T 3s7r_A 80 RVIDPKK 86 (87)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999876
No 112
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=3.1e-09 Score=87.14 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=66.2
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.++.|.+.|+-.. + -++||++.|++||.|.+|.|+.+.. ....|++||+|.+.++|.+|+. +||..|+|+
T Consensus 10 ~~~~lfV~~Lp~~--~---te~~L~~~F~~~G~v~~v~i~~d~~----g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr 79 (103)
T 1s79_A 10 KNRSVYIKGFPTD--A---TLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVE-TPGQKYKET 79 (103)
T ss_dssp GGGCEEEECCCTT--C---CHHHHHHHHHTSSCEEEEEEECCCT----TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT
T ss_pred CCCEEEEECCCCC--C---CHHHHHHHHhhcCCEEEEEEEECCC----CCCccEEEEEECCHHHHHHHHH-cCCCEECCE
Confidence 5678999887432 2 2567889999999999999997643 2568999999999999999999 999999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.+.+...
T Consensus 80 ~l~V~~~~~ 88 (103)
T 1s79_A 80 DLLILFKDD 88 (103)
T ss_dssp TCEEEEHHH
T ss_pred EEEEEEchH
Confidence 999987643
No 113
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.92 E-value=5e-09 Score=91.71 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=69.7
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|++.|+-..- -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 112 ~~~~~l~v~nl~~~~-----~~~~l~~~f~~~G~v~~~~~~~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYL-----NDDQVKELLTSFGPLKAFNLVKDSATG---LSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCTTC-----CHHHHHHHHHTBSCEEEEEEEECTTTC---SEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCC-----CHHHHHHHHHHcCCccEEEEeecCCCC---CcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 577899999975422 256889999999999999999864332 457999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.+.|...
T Consensus 184 ~~l~v~~a~~ 193 (198)
T 2yh0_A 184 KKLLVQRASV 193 (198)
T ss_dssp EECEEEESCC
T ss_pred EEEEEEECCC
Confidence 9999999854
No 114
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=3.2e-09 Score=88.57 Aligned_cols=77 Identities=23% Similarity=0.377 Sum_probs=64.6
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC--CCe
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD--GRF 349 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln--GR~ 349 (381)
..++++|.+.|+-. ++. ++||++.|++||.|.+|.|.+. +|++||+|++.++|.+|+..|+ |..
T Consensus 13 ~~~~~~LfV~nLp~--~vt---e~dL~~lF~~fG~V~~v~i~~~---------kGfaFVeF~~~~~A~~Ai~~l~~~~~~ 78 (105)
T 1sjq_A 13 GVPSRVIHIRKLPI--DVT---EGEVISLGLPFGKVTNLLMLKG---------KNQAFIEMNTEEAANTMVNYYTSVTPV 78 (105)
T ss_dssp CCCCCEEEECSCCT--TSC---HHHHHHHHHHHCCEEEEEEETT---------TTEEEEEESSHHHHHHHHHHHTTSCCE
T ss_pred CCCCCEEEEeCCCC--CCC---HHHHHHHHHhcCCEEEEEEEcC---------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 35788999999753 222 5678899999999999999852 5899999999999999999886 478
Q ss_pred eCCeEEEEEeccc
Q 016857 350 FGGRVVRATFYDE 362 (381)
Q Consensus 350 F~GR~V~a~fy~e 362 (381)
|+||.|.+.|...
T Consensus 79 l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 79 LRGQPIYIQFSNH 91 (105)
T ss_dssp ETTEECCBCCCSS
T ss_pred ECCEEEEEEEcCC
Confidence 9999999998754
No 115
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.92 E-value=8.7e-10 Score=87.02 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=61.5
Q ss_pred EEEEecccCCCCChhhHHHHHHHHHhccC--CeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 277 VLLLRNMVGPGEVDDELEDEVGSECAKYG--TVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 277 VVvL~NMv~~~El~dELeeDI~EECsKYG--~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
.|++.|+-. ++ -++||++.|++|| .|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+||.
T Consensus 3 ~l~V~nL~~--~~---t~~~l~~~F~~~G~~~v~~v~i~~~~~~g---~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 3 ALYIGNLTW--WT---TDEDLTEAVHSLGVNDILEIKFFENRANG---QSKGFALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp -CEEESCCT--TC---CHHHHHHHHHTTTCCCCCCEEEEECTTTC---CEEEEEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred EEEEeCCCC--CC---CHHHHHHHHHHhCCCceEEEEEEecCCCC---ccCcEEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 356666532 12 2567889999999 99999999865433 46899999999999999999999999999999
Q ss_pred EEEEeccc
Q 016857 355 VRATFYDE 362 (381)
Q Consensus 355 V~a~fy~e 362 (381)
|.+.+...
T Consensus 75 i~V~~~~~ 82 (90)
T 3p5t_L 75 PVVTPSNK 82 (90)
T ss_dssp CEECCC--
T ss_pred EEEEECCC
Confidence 99988754
No 116
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.92 E-value=6e-09 Score=84.96 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=64.5
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
...+.|++.|+-.. + -++||++.|++||.|..|.|+.+ |++||+|.+.++|.+|+..|||..|+|
T Consensus 13 ~~~~~l~V~nLp~~--~---t~~~l~~~F~~~G~i~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 13 RSENRVVVSGLPPS--G---SWQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp SCCCEEEEESCCSS--C---CHHHHHHHHGGGSCEEEEEEETT----------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCEeEEEEecC----------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 35678999997522 2 25678899999999999999752 899999999999999999999999999
Q ss_pred -----eEEEEEeccc
Q 016857 353 -----RVVRATFYDE 362 (381)
Q Consensus 353 -----R~V~a~fy~e 362 (381)
+.|.+.+...
T Consensus 78 ~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 78 HEGETAYIRVKVDGP 92 (108)
T ss_dssp TTSCEEEEEEEESSC
T ss_pred CcCcceEEEEEeCCC
Confidence 9999999875
No 117
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.91 E-value=1.4e-09 Score=85.18 Aligned_cols=78 Identities=23% Similarity=0.306 Sum_probs=63.1
Q ss_pred eEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEE
Q 016857 276 RVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVV 355 (381)
Q Consensus 276 rVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V 355 (381)
+.|++.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.+ |.+|+..|||..|+|+.|
T Consensus 2 ~~l~V~nLp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYS--A---TSEQVKELFSQFGKVFNVKLIYDRETK---KPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTT--S---SHHHHTTTHHHHTCCSEEEECCCSSSC---CCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCC--C---CHHHHHHHHHhcCCEEEEEEEEcCCCC---CcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 46777886422 2 256788999999999999998765432 46899999999999 999999999999999999
Q ss_pred EEEeccc
Q 016857 356 RATFYDE 362 (381)
Q Consensus 356 ~a~fy~e 362 (381)
.+.+...
T Consensus 73 ~V~~a~~ 79 (90)
T 2ki2_A 73 RVTEANP 79 (90)
T ss_dssp SEEEC--
T ss_pred EEEEcCC
Confidence 9999765
No 118
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=3.2e-09 Score=85.57 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=68.0
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++.|+|.|+-.. + -++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+.. ||..|+
T Consensus 13 ~~~~~~l~V~nlp~~--~---t~~~l~~~F~~~G~v~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWS--T---TQETLRSYFSQYGEVVDCVIMKDKTTN---QSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp SSSSSEECCBSCCTT--C---CHHHHHHHHHTTSCEEEEEEEECSSSC---CEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHHhcCCeEEEEEeeCCCCC---CcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 346788999997422 2 256788999999999999999864432 4679999999999999999999 999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.+...
T Consensus 84 g~~l~V~~a~~ 94 (105)
T 2dh8_A 84 GRNIDPKPCTP 94 (105)
T ss_dssp TEEEBCCCSCC
T ss_pred CEEEEEEEccC
Confidence 99999988754
No 119
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.90 E-value=6.7e-09 Score=87.86 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=64.8
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.++.|++.|+-..- -++||++.|++||.|..|.|..+...+ ...|++||+|.+.++|.+|+..|||+.|+|+
T Consensus 87 ~~~~l~v~nl~~~~-----t~~~l~~~f~~~G~i~~~~i~~~~~~g---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 87 RDANLYVSGLPKTM-----TQKELEQLFSQYGRIITSRILVDQVTG---VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp TTCEEEEESCCTTC-----CHHHHHHHHGGGSCEEEEEEEECTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCCcEEECCCCCcC-----CHHHHHHHHHhcCCEeEEEEEecCCCC---CccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 46778898875322 256889999999999999998764332 4579999999999999999999999999997
Q ss_pred E--EEEEec
Q 016857 354 V--VRATFY 360 (381)
Q Consensus 354 ~--V~a~fy 360 (381)
. |.+.|.
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 5 887763
No 120
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.90 E-value=4.1e-09 Score=85.94 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=63.8
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|+|.|+-... + -++||++.|++||.|.+|.|. .|++||+|.+.++|.+|+..|||..|+|
T Consensus 25 ~~~~~l~V~nl~~~~-~---t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 25 SINSRVFIGNLNTAL-V---KKSDVETIFSKYGRVAGCSVH-----------KGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp TCSSEEEECSCCCSS-C---CHHHHHHHHGGGSCCSEEEEE-----------TTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCccc-C---CHHHHHHHHHhCCCeEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 356899999974320 2 156788999999999999993 3899999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.+.|...
T Consensus 90 ~~l~V~~a~~ 99 (110)
T 1wf1_A 90 QTLDINMAGE 99 (110)
T ss_dssp EECCEEESCC
T ss_pred eEEEEEECCC
Confidence 9999999864
No 121
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.90 E-value=3.9e-09 Score=84.47 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=63.2
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.++.|++.|+-.. + -++||++.|++||.|.+|.|.. ..|++||+|.+.++|.+|+..|||..|+|+
T Consensus 26 ~~~~l~V~nlp~~--~---~~~~l~~~f~~~G~i~~~~~~~---------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 26 RVTTAYIGNIPHF--A---TEADLIPLFQNFGFILDFKHYP---------EKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp SCCEEEEESCCTT--C---CHHHHHHHHHTTSCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCcc--c---CHHHHHHHHHhCCCEEEEEEec---------CCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4678999997532 2 2567889999999999999973 358999999999999999999999999999
Q ss_pred EEEEEecc
Q 016857 354 VVRATFYD 361 (381)
Q Consensus 354 ~V~a~fy~ 361 (381)
.|++.|..
T Consensus 92 ~l~V~~a~ 99 (101)
T 2la4_A 92 NLRTGWGK 99 (101)
T ss_dssp ECCCCBCC
T ss_pred EEEEEecc
Confidence 99988764
No 122
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.89 E-value=6.3e-09 Score=93.42 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=63.6
Q ss_pred CCceEE--EEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 273 PPTRVL--LLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 273 ~pSrVV--vL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
.+++|+ ++.||-.. +. +++|++.|++||.|.+|.|+... ..|++||+|.+.++|.+|+..|||+.|
T Consensus 42 ~ps~vl~l~VgNL~~~--vt---ed~L~~~Fs~fG~V~~V~i~~k~-------~rgfAFVeF~d~~~A~~Ai~~LnG~~i 109 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYP--VT---LDVLHQIFSKFGTVLKIITFTKN-------NQFQALLQYADPVSAQHAKLSLDGQNI 109 (164)
T ss_dssp CCCCEEEEEECSCCSC--CC---HHHHHHHHHHHSCEEEEEEEESS-------SCEEEEEEESCHHHHHHHHHHSTTBCS
T ss_pred CCCceEEEEEeCcCCC--CC---HHHHHHHHHhcCCEEEEEEEeCC-------CCCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 366664 47787532 32 45788999999999999997532 358999999999999999999999999
Q ss_pred CC--eEEEEEecccc
Q 016857 351 GG--RVVRATFYDEE 363 (381)
Q Consensus 351 ~G--R~V~a~fy~ee 363 (381)
.| +.|++.|....
T Consensus 110 ~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 110 YNACCTLRIDFSKLT 124 (164)
T ss_dssp SSSCSCEEEEECSSS
T ss_pred cCCCcEEEEEEecCC
Confidence 65 99999998653
No 123
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=7.1e-09 Score=83.89 Aligned_cols=83 Identities=17% Similarity=0.199 Sum_probs=67.0
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCC-eeEEEEe-eeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC--CC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGT-VTRVLIF-EITEPNFPVDEAVRIFVQFERSEQTTKALIDLD--GR 348 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~-V~~V~I~-~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln--GR 348 (381)
.+++.|++.|+-. ++ -++||++.|++||. |.+|.|+ .+... ....|++||+|.+.++|.+|+..|| +.
T Consensus 6 ~~~~~l~V~nLp~--~~---t~~~l~~~f~~~G~~v~~v~i~~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~~g~~ 77 (109)
T 2dis_A 6 SGNCRLFIGGIPK--MK---KREEILEEIAKVTEGVLDVIVYASAADK---MKNRGFAFVEYESHRAAAMARRKLMPGRI 77 (109)
T ss_dssp CCSEEEEEECCCT--TS---CHHHHHHHHHHHSTTEEEEECCSSSCTT---TTTCCEEEEEESSHHHHHHHHTTTTTCCS
T ss_pred cCCCEEEEeCCCC--cC---CHHHHHHHHHHhcCCceEEEEEccCCCC---CCcCcEEEEEecCHHHHHHHHHHhhCCCc
Confidence 4678899999742 22 25678899999999 9999997 33322 2467999999999999999999996 58
Q ss_pred eeCCeEEEEEecccc
Q 016857 349 FFGGRVVRATFYDEE 363 (381)
Q Consensus 349 ~F~GR~V~a~fy~ee 363 (381)
.|+|+.|.+.|....
T Consensus 78 ~~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 78 QLWGHQIAVDWAEPE 92 (109)
T ss_dssp CBTTBCCEEEESCSS
T ss_pred eecCCeEEEEEcCCC
Confidence 999999999998653
No 124
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.88 E-value=1.3e-08 Score=86.04 Aligned_cols=81 Identities=12% Similarity=0.200 Sum_probs=67.9
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
+++.|++.|+-.. +. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|+
T Consensus 1 s~~~l~v~nlp~~--~~---~~~l~~~f~~~G~i~~v~~~~~~~~~---~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 72 (167)
T 1fxl_A 1 SKTNLIVNYLPQN--MT---QEEFRSLFGSIGEIESCKLVRDKITG---QSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 72 (167)
T ss_dssp CCSEEEEESCCTT--CC---HHHHHHHHHTTSCEEEEEEEECTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CcceEEEcCCCCC--CC---HHHHHHHHHhcCCeEEEEEEeCCCCC---cceeEEEEEECCHHHHHHHHHHcCCCccCCc
Confidence 3678899997532 22 56788999999999999998865332 4679999999999999999999999999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.+.+...
T Consensus 73 ~l~v~~~~~ 81 (167)
T 1fxl_A 73 TIKVSYARP 81 (167)
T ss_dssp ECEEEECCC
T ss_pred eEEEEecCC
Confidence 999998864
No 125
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=1.3e-08 Score=79.86 Aligned_cols=79 Identities=22% Similarity=0.241 Sum_probs=66.0
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
...++|++.|+-.. + -++||++.|++| .|.+|.|+.+ ..+ ...|++||+|.+.++|.+|+. |||..|+|
T Consensus 8 ~~~~~l~v~nLp~~--~---t~~~l~~~F~~~-~i~~v~i~~~-~~g---~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 8 TTCHTVKLRGAPFN--V---TEKNVMEFLAPL-KPVAIRIVRN-AHG---NKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp CCCCEEEEECCCSS--C---CHHHHHHHHTTS-CCSEEEEEEC-TTS---CEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred CCccEEEEECCCCC--C---CHHHHHHHHhhC-CceEEEEEEC-CCC---CCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 46788999997532 2 256788999999 9999999986 322 457999999999999999999 99999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
|.|.+.+...
T Consensus 77 r~i~v~~a~~ 86 (91)
T 2dgw_A 77 RYIEVFREKS 86 (91)
T ss_dssp EEEEEEEESS
T ss_pred cEEEEEECCc
Confidence 9999998754
No 126
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=6.9e-09 Score=85.17 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=66.8
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.++.|+|.|+-. ++. ++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+.. ||..|+|+
T Consensus 26 ~~~~l~V~nLp~--~~t---e~~l~~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 96 (116)
T 1x4b_A 26 QFRKLFIGGLSF--ETT---EESLRNYYEQWGKLTDCVVMRDPASK---RSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR 96 (116)
T ss_dssp HHTEEEEECCTT--CCC---HHHHHHHHTSSCCCSEEEEECCTTTS---SCCSEEEEECSSHHHHHHHHTS-CSEEETTE
T ss_pred CCCEEEEeCCCC--CCC---HHHHHHHHHhcCCEEEEEEEECCCCC---CcCceEEEEeCCHHHHHHHHHh-CCcEECCE
Confidence 467899999742 222 46788999999999999998764432 4679999999999999999999 99999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.+.+...
T Consensus 97 ~l~V~~a~~ 105 (116)
T 1x4b_A 97 VVEPKRAVA 105 (116)
T ss_dssp EEEEECCSS
T ss_pred EEEEEECCC
Confidence 999999754
No 127
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.88 E-value=6.2e-09 Score=94.88 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=65.4
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
|.++++|.+.|+- +.++. +++|++.|++||.|.+|.|..+ ..|++||+|.+.++|.+|+..|||..|.
T Consensus 1 g~~~~~l~V~nL~-~~~~~---~~~L~~~F~~~G~v~~v~i~~~--------~~g~afV~f~~~~~A~~Ai~~lng~~~~ 68 (205)
T 3tyt_A 1 GADSPVLMVYGLD-QSKMN---CDRVFNVFCLYGNVEKVKFMKS--------KPGAAMVEMADGYAVDRAITHLNNNFMF 68 (205)
T ss_dssp -CCCSEEEEECCC-TTTCC---HHHHHHHHTTTSCEEEEEECTT--------STTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCC-cccCC---HHHHHHHHHhcCCeEEEEEecC--------CCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3578899999964 22333 3478899999999999999753 2589999999999999999999999999
Q ss_pred CeEEEEEecc
Q 016857 352 GRVVRATFYD 361 (381)
Q Consensus 352 GR~V~a~fy~ 361 (381)
||.|.+.|..
T Consensus 69 g~~l~v~~s~ 78 (205)
T 3tyt_A 69 GQKMNVCVSK 78 (205)
T ss_dssp TEECEEEECS
T ss_pred CceEEEEEcc
Confidence 9999999874
No 128
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.87 E-value=8.5e-09 Score=96.05 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=65.5
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..++++|+|.||-. ++ -++||++.|++||.|.+|.|.... .|++||+|.+.++|.+|+..|||+.|+
T Consensus 204 ~~~~~~l~v~nl~~--~~---~~~~l~~~F~~~G~i~~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 204 NPPNHILFLTNLPE--ET---NELMLSMLFNQFPGFKEVRLVPGR--------HDIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred CCCCCEEEEeCCCC--cC---CHHHHHHHHHhcCCeEEEEEecCC--------CcEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 45788999999853 22 356889999999999999998532 489999999999999999999999999
Q ss_pred -CeEEEEEec
Q 016857 352 -GRVVRATFY 360 (381)
Q Consensus 352 -GR~V~a~fy 360 (381)
|+.|++.|.
T Consensus 271 ~g~~l~v~~a 280 (282)
T 3pgw_A 271 QNNAMKISFA 280 (282)
T ss_pred CCCEEEEEEe
Confidence 999999986
No 129
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.87 E-value=3.4e-09 Score=85.31 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=63.7
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++.|++.|+-.. +. ++||++.|++|| |.+|.|..+... .....|++||+|.+.++|.+|+ .|||..|+
T Consensus 16 ~~~~~~l~V~nLp~~--~t---~~~l~~~F~~~G-i~~v~i~~~~~~--~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~ 86 (100)
T 2j76_E 16 KSPPYTAFLGNLPYD--VT---EESIKEFFRGLN-ISAVRLPREPSN--PERLKGFGYAEFEDLDSLLSAL-SLNEESLG 86 (100)
T ss_dssp ----CEEEESCCSSC--CS---SSHHHHHSCSSC-EEEEECSCCTTT--TCCCCSCEEEEECCHHHHHHHH-HTTTCCBT
T ss_pred CCCCcEEEEeCCCCC--CC---HHHHHHHHHhcC-CeEEEEEecCCc--CCccCeEEEEEECCHHHHHHHH-hcCCCEEC
Confidence 346889999998432 21 346789999999 999999876421 1246799999999999999999 99999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.+...
T Consensus 87 g~~l~V~~a~~ 97 (100)
T 2j76_E 87 NRRIRVDVADQ 97 (100)
T ss_dssp TBCCCCEECCC
T ss_pred CeEEEEEeccC
Confidence 99999998753
No 130
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=9.5e-09 Score=83.95 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=66.3
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee--
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF-- 350 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F-- 350 (381)
..++.|++.|+-.. +. ++||++.|++||.|.+|.|..+. .+ ...|++||+|.+.++|.+|+..|||..|
T Consensus 23 ~~~~~l~V~nlp~~--~t---~~~l~~~F~~~G~i~~~~i~~~~-~g---~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 23 QDPTNLYISNLPLS--MD---EQELENMLKPFGQVISTRILRDS-SG---TSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CCTTEEEEESCCTT--CC---HHHHHHTTTTTSCEEEEEEEECS-SS---CEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCCEEEEeCCCCC--CC---HHHHHHHHHhcCCEEEEEEEECC-CC---CcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 35678999997532 22 46788999999999999998864 22 4679999999999999999999999999
Q ss_pred ------CCeEEEEEecc
Q 016857 351 ------GGRVVRATFYD 361 (381)
Q Consensus 351 ------~GR~V~a~fy~ 361 (381)
.++.|.+.|..
T Consensus 94 ~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 94 PPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp CTTSCCCSSCBEEEECC
T ss_pred CccccCCCCceeEEccC
Confidence 57889999875
No 131
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.86 E-value=1.1e-08 Score=84.03 Aligned_cols=82 Identities=11% Similarity=0.151 Sum_probs=64.7
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++.|++.|+-. ++. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..++ ..|+
T Consensus 22 ~~~~~~lfV~nLp~--~~t---e~~L~~~F~~~G~i~~v~i~~~~~tg---~~kg~afV~f~~~~~A~~Ai~~~~-~~l~ 92 (109)
T 2rs2_A 22 GSSGCKMFIGGLSW--QTT---QEGLREYFGQFGEVKECLVMRDPLTK---RSRGFGFVTFMDQAGVDKVLAQSR-HELD 92 (109)
T ss_dssp ----CCEEEESCCT--TCC---HHHHHHHHTTTSCEEEEEECCCTTTC---CCTTCEEEEESSHHHHHHHHHSSC-EEET
T ss_pred CCCCCEEEEeCCCC--CCC---HHHHHHHHHccCCeEEEEEEECCCCC---CcCcEEEEEECCHHHHHHHHHHCC-CcCC
Confidence 34678899999742 222 56788999999999999998764432 467999999999999999999975 9999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.+...
T Consensus 93 g~~l~V~~a~~ 103 (109)
T 2rs2_A 93 SKTIDPKVAFP 103 (109)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999998753
No 132
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.86 E-value=1.1e-08 Score=87.16 Aligned_cols=81 Identities=12% Similarity=0.182 Sum_probs=68.2
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
+++.|++.|+-.. +. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|+
T Consensus 2 ~~~~l~v~nlp~~--~~---~~~l~~~f~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 73 (168)
T 1b7f_A 2 SNTNLIVNYLPQD--MT---DRELYALFRAIGPINTCRIMRDYKTG---YSYGYAFVDFTSEMDSQRAIKVLNGITVRNK 73 (168)
T ss_dssp CCSEEEEECCCTT--CC---HHHHHHHHHTTSCEEEEECCEETTTT---EECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CccEEEEeCCCCC--CC---HHHHHHHHHhcCCeeEEEEEEeCCCC---ccceEEEEEECCHHHHHHHHHhcCCCEeCCc
Confidence 5788999997432 22 56788999999999999998865432 3578999999999999999999999999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.+.+...
T Consensus 74 ~l~v~~~~~ 82 (168)
T 1b7f_A 74 RLKVSYARP 82 (168)
T ss_dssp ECEEEECCC
T ss_pred EEEEEecCC
Confidence 999998764
No 133
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.86 E-value=5.2e-09 Score=87.23 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=69.9
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCC---eeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCe
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGT---VTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRF 349 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~---V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~ 349 (381)
...++|+|.|+-..- -++||++.|++||. |.+|.|..+.. + ...|++||+|.+.++|.+|+. |||..
T Consensus 15 ~~~~~l~V~nLp~~~-----te~~l~~~F~~~G~~~~v~~v~i~~~~~-g---~~~G~afV~F~~~~~a~~Al~-~~g~~ 84 (118)
T 2db1_A 15 GEGYVVKLRGLPWSC-----SIEDVQNFLSDCTIHDGVAGVHFIYTRE-G---RQSGEAFVELESEDDVKLALK-KDRES 84 (118)
T ss_dssp CCCCEEEEESCCTTC-----CHHHHHHHTTTSCBTTGGGGEEEEECSS-S---CEEEEEEEEBSSHHHHHHHGG-GTTEE
T ss_pred CCCcEEEEeCCCCCC-----CHHHHHHHHHHcCCccCceeEEEEECCC-C---CCCeEEEEEECCHHHHHHHHh-cCCCe
Confidence 357789999975322 25688999999999 89999987644 2 468999999999999999999 99999
Q ss_pred eCCeEEEEEeccccccc
Q 016857 350 FGGRVVRATFYDEERFS 366 (381)
Q Consensus 350 F~GR~V~a~fy~ee~F~ 366 (381)
|+||.|.+.+.....+.
T Consensus 85 ~~gr~i~V~~a~~~~~~ 101 (118)
T 2db1_A 85 MGHRYIEVFKSHRTEMD 101 (118)
T ss_dssp ETTEEEEEEEECHHHHH
T ss_pred ECCeEEEEEECCHHHHH
Confidence 99999999998776543
No 134
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.86 E-value=8.8e-09 Score=104.53 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=68.9
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.++++|+|.||-.. + -+++|.+.|++||.|+.|.|+.+...+ ...|++||+|.+.++|.+|+..|||.+|+|
T Consensus 100 ~~~~~lfV~nL~~~--~---te~~L~~~F~~~G~I~~v~i~~d~~tg---~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g 171 (437)
T 3pgw_S 100 DAFKTLFVARVNYD--T---TESKLRREFEVYGPIKRIHMVYSKRSG---KPRGYAFIEYEHERDMHSAYKHADGKKIDG 171 (437)
T ss_pred CCCCEEEEeCCCCC--C---CHHHHHHHHHHcCCeeEEEeeccCCCC---CccceEEEeeccHHHHHHHHHHcCCCEECC
Confidence 46789999997422 2 246788999999999999998754332 467999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.|.|...
T Consensus 172 r~i~V~~a~~ 181 (437)
T 3pgw_S 172 RRVLVDVERG 181 (437)
T ss_pred EEEEEEEeCC
Confidence 9999999864
No 135
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2e-08 Score=80.62 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=66.0
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-. ++. ++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+. ++..|+
T Consensus 12 ~~~~~~l~v~nlp~--~~t---~~~l~~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~A~~--~~~~~~ 81 (103)
T 2cqg_A 12 VQKTSDLIVLGLPW--KTT---EQDLKEYFSTFGEVLMVQVKKDLKTG---HSKGFGFVRFTEYETQVKVMS--QRHMID 81 (103)
T ss_dssp CCCCCCEEEESCCS--SCC---HHHHHHHHGGGSCEEEEEEEECSSSC---SEEEEEEEEESSHHHHHHHHH--SCEEET
T ss_pred cCCCCEEEEEcCCC--cCC---HHHHHHHHHhcCCeEEEEEEecCCCC---CccceEEEEECCHHHHHHHHH--cCCeeC
Confidence 34678899999642 222 56788999999999999999865432 467999999999999999999 477999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.+...
T Consensus 82 g~~l~v~~a~~ 92 (103)
T 2cqg_A 82 GRWCDCKLPNS 92 (103)
T ss_dssp TEEEEEECCCT
T ss_pred CeEEEEEecCC
Confidence 99999999864
No 136
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.85 E-value=1.1e-08 Score=92.50 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=65.9
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
++.|++.|+-.. +. ++||++.|++||.|.+|.|+.+.. ...|++||+|.+.++|.+|+..|||..|+||.
T Consensus 103 ~~~l~v~nl~~~--~t---~~~l~~~F~~~G~i~~~~i~~d~~-----~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~ 172 (213)
T 4f02_A 103 VGNIFIKNLDKS--ID---NKALYDTFSAFGNILSCKVVCDEN-----GSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 172 (213)
T ss_dssp TTEEEEESCCTT--CC---HHHHHHHHGGGSCEEEEEEEEETT-----EEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cccceECCcccc--cH---HHHHHHHHhhcCCeEEEEeeccCC-----CCceEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 456888886432 22 468889999999999999987642 35799999999999999999999999999999
Q ss_pred EEEEeccc
Q 016857 355 VRATFYDE 362 (381)
Q Consensus 355 V~a~fy~e 362 (381)
|.+.++..
T Consensus 173 i~V~~a~~ 180 (213)
T 4f02_A 173 VFVGRFKS 180 (213)
T ss_dssp CEEEECCC
T ss_pred EEEEEcCC
Confidence 99999865
No 137
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=6.1e-09 Score=85.85 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=69.7
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCe-eEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTV-TRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V-~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
.++++|+|.||-.. + -++||++.|++||.| .+|.|+.+. .+ ...|++||+|.+.++|.+|+.. ||..|+
T Consensus 13 ~~~~~l~V~nLp~~--~---t~~~l~~~F~~~g~v~~~v~i~~d~-~g---~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 13 SAKVCAHITNIPFS--I---TKMDVLQFLEGIPVDENAVHVLVDN-NG---QGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp SCCCEEEEESCCTT--S---CHHHHHHHTTTSCCCSTTEEECCCT-TS---SCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred CCccEEEEeCcCCc--C---CHHHHHHHHHhCCCcCCeEEEEECC-CC---CcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 46789999997422 2 256788999999999 889998754 22 4689999999999999999988 999999
Q ss_pred CeEEEEEecccccccc
Q 016857 352 GRVVRATFYDEERFSK 367 (381)
Q Consensus 352 GR~V~a~fy~ee~F~~ 367 (381)
||.|.+.+........
T Consensus 83 gr~i~v~~a~~~~~~~ 98 (114)
T 2cpy_A 83 GREAFVHVVTLEDMRE 98 (114)
T ss_dssp TEEEEEEEECHHHHHH
T ss_pred CeEEEEEECCHHHHHH
Confidence 9999999998765443
No 138
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.84 E-value=9.4e-09 Score=92.00 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=68.9
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|+|.|+-. ++ -++||++.|++||.|.+|.|+.+. . ....|++||+|.+.++|.+|+..|||..|+|
T Consensus 86 ~~~~~l~V~nLp~--~~---te~~L~~~F~~~G~I~~v~i~~d~-~---g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 86 ETGAKLLVSNLDF--GV---SDADIQELFAEFGTLKKAAVDYDR-S---GRSLGTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp TTCEEEEEECCCS--CC---CHHHHHHHHHHTSCCSEEEECCCT-T---SSCSCCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCC--CC---CHHHHHHHHHhcCCeEEEEEEECC-C---CCEeeEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 4678999999742 22 256788999999999999998754 2 2467999999999999999999999999999
Q ss_pred eEEEEEecccc
Q 016857 353 RVVRATFYDEE 363 (381)
Q Consensus 353 R~V~a~fy~ee 363 (381)
+.|.+.|....
T Consensus 157 r~l~V~~a~~~ 167 (177)
T 2f3j_A 157 RPMDIQLVASQ 167 (177)
T ss_dssp SBCEEEEESSG
T ss_pred EEEEEEEecCC
Confidence 99999998654
No 139
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.84 E-value=3e-09 Score=80.52 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=54.4
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEe
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATF 359 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~f 359 (381)
++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+. |||..|+|+.|.+.+
T Consensus 13 ~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 13 VEDVKHYFEQFGKVDDAMLMFDKTTN---RHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp HHHHHHHHHTTSCCSEECCCBCSSST---TSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred HHHHHHHHHhcCCEEEEEEEecCCCC---CcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 56788999999999999998765432 467999999999999999998 999999999999876
No 140
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=7.9e-09 Score=85.37 Aligned_cols=76 Identities=11% Similarity=0.200 Sum_probs=64.5
Q ss_pred CCceE-EEEecccCCCCChhhHHHHHHHHHhcc-CCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 273 PPTRV-LLLRNMVGPGEVDDELEDEVGSECAKY-GTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 273 ~pSrV-VvL~NMv~~~El~dELeeDI~EECsKY-G~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
.|+.+ |++.|+-..-+ .++|..+|++.|++| |+|.+|. .|++||+|.+.++|.+|++.|||..|
T Consensus 6 ~p~~T~lYV~NL~~~~~-~~~lk~~L~~lF~~yGG~Vl~Vt-------------gG~AfV~F~~~esA~~A~~~l~G~~l 71 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKD-GKSVSNRLRRLSDNCGGKVLSIT-------------GCSAILRFINQDSAERAQKRMENEDV 71 (96)
T ss_dssp CCSSEEEEEESCCTTSC-HHHHHHHHHHHHHTTTCCEEECC-------------TTCEEEEESSHHHHHHHHHHHTTCCS
T ss_pred CCcceEEEEeCCCCcCC-HHHHHHHHHHHHHHcCCeeEEEe-------------cCEEEEEECCHHHHHHHHHHhcCCcc
Confidence 46777 77999753322 267888999999999 5999992 18999999999999999999999999
Q ss_pred CCeEEEEEeccc
Q 016857 351 GGRVVRATFYDE 362 (381)
Q Consensus 351 ~GR~V~a~fy~e 362 (381)
.||.|++.|...
T Consensus 72 ~gr~i~v~~A~~ 83 (96)
T 2diu_A 72 FGNRIIVSFTPK 83 (96)
T ss_dssp SSSCCEEESSCC
T ss_pred CCceEEEEecCC
Confidence 999999999875
No 141
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.83 E-value=1.4e-08 Score=86.83 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=65.2
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC--
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG-- 351 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~-- 351 (381)
.++.|+|.|+-.. + -++||++.|++||.|.+|.|..+.. ....|++||+|.+.++|.+|+..|||+.+.
T Consensus 94 ~~~~l~v~nl~~~--~---t~~~l~~~F~~~G~i~~v~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 164 (175)
T 3nmr_A 94 EDRKLFIGMISKK--C---TENDIRVMFSSFGQIEECRILRGPD----GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 164 (175)
T ss_dssp GGSEEEEESCCTT--C---CHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT
T ss_pred CCCeEEEcCCCCc--C---CHHHHHHHHHhCCCEEEEEEEECCC----CCEEEEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 5778999997432 2 2467899999999999999987642 245799999999999999999999998665
Q ss_pred -CeEEEEEecc
Q 016857 352 -GRVVRATFYD 361 (381)
Q Consensus 352 -GR~V~a~fy~ 361 (381)
||.|.+.|.+
T Consensus 165 ~~~~l~V~~ad 175 (175)
T 3nmr_A 165 CSSPMVVKFAD 175 (175)
T ss_dssp CSSCCEEEECC
T ss_pred CCCCeEEEecC
Confidence 4999999874
No 142
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=1.3e-08 Score=81.33 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=63.8
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-.. + -++||++.|++||.| .|+.. .. ....|++||+|.+.++|.+|+..|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~--~---t~~~l~~~F~~~g~v---~~~~~-~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 12 SGESKTLVLSNLSYS--A---TEETLQEVFEKATFI---KVPQN-QN---GKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp SCCCSEEEEESCCTT--C---CHHHHHHHCSSCSEE---ECCBC-SS---SCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHHhCCEE---EEEEC-CC---CCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 347889999997532 2 246788999999988 34433 11 246799999999999999999999999999
Q ss_pred CeEEEEEecccc
Q 016857 352 GRVVRATFYDEE 363 (381)
Q Consensus 352 GR~V~a~fy~ee 363 (381)
|+.|++.|....
T Consensus 80 g~~l~v~~a~~~ 91 (101)
T 2fc9_A 80 GRAIRLELQGPR 91 (101)
T ss_dssp TEEEEEEECSSC
T ss_pred CeEEEEEEcCCC
Confidence 999999998654
No 143
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1e-08 Score=81.79 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=63.5
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++.|++.|+-. ++. ++||++.|++||.|. +.|... ...|++||+|.+.++|.+|+..|||..|+
T Consensus 16 ~~~~~~l~V~nL~~--~~t---~~~l~~~F~~~G~v~-~~~~~~-------~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 16 APLAADVYVGNLPR--DAR---VSDLKRALRELGSVP-LRLTWQ-------GPRRRAFLHYPDSAAAQQAVSCLQGLRLG 82 (97)
T ss_dssp SCCCCEEEEECCCT--TCC---HHHHHHHHHHTTCCC-SEEEEE-------TTTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCC--cCc---HHHHHHHHHhcCCEE-EEEEcC-------CCCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34678999999742 222 467889999999997 555543 24689999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.+...
T Consensus 83 g~~l~V~~a~~ 93 (97)
T 2e5j_A 83 TDTLRVALARQ 93 (97)
T ss_dssp SSCCEEEECCC
T ss_pred CcEEEEEEcCC
Confidence 99999998754
No 144
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.82 E-value=5.8e-09 Score=83.46 Aligned_cols=74 Identities=23% Similarity=0.300 Sum_probs=62.6
Q ss_pred EEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEE
Q 016857 277 VLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVR 356 (381)
Q Consensus 277 VVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~ 356 (381)
.|++.|+-. ++ -++||++.|++||.|.+|.|..+ ..|++||+|.+.++|.+|+..|||..|+|+.|.
T Consensus 2 ~l~V~nLp~--~~---t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 68 (101)
T 2hvz_A 2 KVYVGNLGT--GA---GKGELERAFSYYGPLRTVWIARN--------PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVR 68 (101)
T ss_dssp EEEEECCCS--SC---SHHHHHHHHHHHCCCSEEEEESS--------SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCE
T ss_pred EEEEeCCCC--CC---CHHHHHHHHHhcCCeEEEEEeeC--------CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEE
Confidence 467777642 22 25678899999999999999864 368999999999999999999999999999999
Q ss_pred EEecccc
Q 016857 357 ATFYDEE 363 (381)
Q Consensus 357 a~fy~ee 363 (381)
+.+....
T Consensus 69 V~~a~~~ 75 (101)
T 2hvz_A 69 VELSTGM 75 (101)
T ss_dssp EEESSSC
T ss_pred EEEccCC
Confidence 9998764
No 145
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=2.1e-09 Score=87.87 Aligned_cols=80 Identities=23% Similarity=0.343 Sum_probs=64.1
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCee----EEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVT----RVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDG 347 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~----~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnG 347 (381)
..++++|+|.|+-. ++. ++||++.|++||.|. .+.+. . ....|++||+|.+.++|.+|+..|||
T Consensus 22 ~~~~~~l~V~nLp~--~~t---~~~l~~~f~~~G~v~~~~~~~~~~----~---g~~~g~afV~f~~~~~a~~Ai~~l~g 89 (115)
T 2cpx_A 22 GEPNKVLYLKNLSP--RVT---ERDLVSLFARFQEKKGPPIQFRMM----T---GRMRGQAFITFPNKEIAWQALHLVNG 89 (115)
T ss_dssp CSCCSEEEEECCCT--TCC---HHHHHHHTHHHHHSSSSCCEEEEE----C---SSSCSEEEEECSSHHHHHHHHHHSTT
T ss_pred CCCCCEEEEeCCCC--CCC---HHHHHHHHHHhCCccceEEEEEcC----C---CccceEEEEEECCHHHHHHHHHHhCC
Confidence 45789999999742 222 467888999999994 44443 1 24579999999999999999999999
Q ss_pred CeeCCeEEEEEecccc
Q 016857 348 RFFGGRVVRATFYDEE 363 (381)
Q Consensus 348 R~F~GR~V~a~fy~ee 363 (381)
..|+|+.|.+.|....
T Consensus 90 ~~~~g~~l~v~~a~~~ 105 (115)
T 2cpx_A 90 YKLYGKILVIEFGKNK 105 (115)
T ss_dssp CBCSSCBCEEEECCCC
T ss_pred CEeCCcEEEEEEccCC
Confidence 9999999999998653
No 146
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.82 E-value=3.5e-09 Score=90.45 Aligned_cols=81 Identities=22% Similarity=0.274 Sum_probs=68.0
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.++.|+|.|+-. ++ -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|+
T Consensus 46 ~~~~l~V~nLp~--~~---te~~L~~~F~~~G~i~~v~i~~~~~~g---~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 46 GMTSLKVDNLTY--RT---SPDTLRRVFEKYGRVGDVYIPRDRYTK---ESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GCCCEEEECCCS--SC---HHHHHHHHHGGGSCCSEEECCCCSSSS---SCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCEEEEeCCCC--CC---CHHHHHHHHHhcCCEEEEEEEecCCCC---ccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 567899999742 22 357888999999999999998754332 4679999999999999999999999999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.+.|...
T Consensus 118 ~l~V~~a~~ 126 (135)
T 2lea_A 118 ELRVQMARY 126 (135)
T ss_dssp CCEEEECCC
T ss_pred EEEEEECCC
Confidence 999999864
No 147
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.82 E-value=9.9e-09 Score=88.07 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=66.1
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|++.|+-.. +. ++||++.|++||.|.+|.|+.+ ..|++||+|.+.++|.+|+..|||..|+
T Consensus 70 ~~~~~~l~V~nl~~~--~t---~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNN--GN---KTELERAFGYYGPLRSVWVARN--------PPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp STTSCEEEEESCCSC--CS---CHHHHHHHHHHSCEEEEEECSS--------SCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred CCCCCEEEEeCCCCC--CC---HHHHHHHHHhhCCEEEEEEeeC--------CCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 347889999997432 22 3578899999999999999863 3689999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 137 g~~l~v~~a~~ 147 (150)
T 2i2y_A 137 GCRVRVELSNG 147 (150)
T ss_dssp SSCCEEEECCC
T ss_pred CeEEEEEEcCC
Confidence 99999998754
No 148
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.82 E-value=2e-08 Score=93.57 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=70.6
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|++.|+-. .--+++|+..|.+.|++||.|.+|.|.+.. ...|++||+|.+.++|.+|+..|||..|+
T Consensus 6 ~~~~~~l~V~nlp~-~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (282)
T 3pgw_A 6 TRPNHTIYINNLNE-KIKKDELKKSLYAIFSQFGQILDILVSRSL------KMRGQAFVIFKEVSSATNALRSMQGFPFY 78 (282)
T ss_pred CCCCCEEEEeCCCC-CCCHHHHHHHHHHHHhccCCeEEEEEcCCC------CcceEEEEEECCHHHHHHHHHHhcCCeeC
Confidence 45899999999742 222356777788999999999999998621 35799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|++.|...
T Consensus 79 g~~l~v~~a~~ 89 (282)
T 3pgw_A 79 DKPMRIQYAKT 89 (282)
T ss_pred CcEEEEEEecc
Confidence 99999999864
No 149
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.82 E-value=1e-08 Score=95.32 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=66.8
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccC--CeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYG--TVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG--~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
++.|+|.||-.. +. ++||++.|++|| .|++|.|+.+...+ ..+|++||+|.+.++|.+|+..|||..|+|
T Consensus 68 ~~~lfVgnL~~~--~t---e~~L~~~F~~~G~~~v~~v~i~~d~~tg---~skGfaFV~f~~~~~a~~Ai~~lng~~~~G 139 (229)
T 3q2s_C 68 RIALYIGNLTWW--TT---DEDLTEAVHSLGVNDILEIKFFENRANG---QSKGFALVGVGSEASSKKLMDLLPKRELHG 139 (229)
T ss_dssp -CEEEEESCCTT--CC---HHHHHHHHHTTTCCCEEEEEEEECTTTC---CEEEEEEEEESCTTHHHHHHTTSTTSCBTT
T ss_pred ccEEEEeCCCCC--CC---HHHHHHHHHHHCCcceEEEEEEecCCCC---ccceEEEEEECCHHHHHHHHHHcCCCeECC
Confidence 457889897422 22 467889999999 99999999865433 568999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
|.|.|.|...
T Consensus 140 r~l~V~~a~~ 149 (229)
T 3q2s_C 140 QNPVVTPVNK 149 (229)
T ss_dssp BCCEEEECCH
T ss_pred EEeEEEECCC
Confidence 9999999864
No 150
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=2.4e-08 Score=81.73 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=64.8
Q ss_pred CCCceEEEEecccCC---CCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC
Q 016857 272 GPPTRVLLLRNMVGP---GEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR 348 (381)
Q Consensus 272 g~pSrVVvL~NMv~~---~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR 348 (381)
|+|--+|++...=+. .-.+++|..+|.+.|+.||.|..|.|.. ++.||+|.+.++|.+|+. |||.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----------d~~fVtF~d~~sAlaAi~-mnG~ 71 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----------DKMWVTFLEGSSALNVLS-LNGK 71 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----------SSEEEEESSHHHHHHGGG-GTTC
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----------CCEEEEECChHHHHHHHh-cCCe
Confidence 556556666443222 2256899999999999999999999975 338999999999999998 9999
Q ss_pred eeCCeEEEEEeccc
Q 016857 349 FFGGRVVRATFYDE 362 (381)
Q Consensus 349 ~F~GR~V~a~fy~e 362 (381)
.++||.|++.+-+.
T Consensus 72 ~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 72 ELLNRTITIALKSP 85 (91)
T ss_dssp EETTEEEEEEECCC
T ss_pred EeCCeEEEEEeCCC
Confidence 99999999998765
No 151
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.81 E-value=2.6e-08 Score=87.03 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=66.5
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
++++|++.|+-. ++ -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+.. +|..|+|+
T Consensus 103 ~~~~l~V~nLp~--~~---t~~~l~~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~ 173 (196)
T 1l3k_A 103 TVKKIFVGGIKE--DT---EEHHLRDYFEQYGKIEVIEIMTDRGSG---KKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGH 173 (196)
T ss_dssp CCSEEEEECCTT--TC---CHHHHHHHHTTTSCEEEEEEEECTTTC---CEEEEEEEEESSHHHHHHHHHC-SCCEETTE
T ss_pred CcceEEEeCCCC--CC---CHHHHHHHHhcCCCeEEEEEeecCCCC---CccceEEEEECCHHHHHHHHHh-CCcEECCE
Confidence 568899999742 22 256889999999999999999865332 4679999999999999999987 89999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.+.+...
T Consensus 174 ~i~v~~a~~ 182 (196)
T 1l3k_A 174 NCEVRKALS 182 (196)
T ss_dssp ECEEEECC-
T ss_pred EEEEEecCC
Confidence 999999865
No 152
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=3.2e-09 Score=88.67 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=66.9
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
...++|+|.|+-.. + -++||++.|++||.|..+.++.....+ ...|++||+|.+.++|.+|+. |||..|+|
T Consensus 23 ~~~~~l~V~nLp~~--~---te~~l~~~F~~~G~v~~~~~~~~~~~g---~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 93 (124)
T 1wel_A 23 EAGFCVYLKGLPFE--A---ENKHVIDFFKKLDIVEDSIYIAYGPNG---KATGEGFVEFRNEADYKAALC-RHKQYMGN 93 (124)
T ss_dssp CCCCEEEEECCCTT--C---CHHHHHHHSCSSCBCTTTCEEEECTTS---SEEEEEEEEBSSSHHHHHHHT-SCSBCSTT
T ss_pred CCCcEEEEeCCCCC--C---CHHHHHHHHHhcCCccceEEEEECCCC---CCCeEEEEEECCHHHHHHHHH-hCCCeECC
Confidence 35678999997422 2 256888999999999885544433322 457999999999999999999 99999999
Q ss_pred eEEEEEecccccc
Q 016857 353 RVVRATFYDEERF 365 (381)
Q Consensus 353 R~V~a~fy~ee~F 365 (381)
|.|.+.+.....+
T Consensus 94 r~i~V~~a~~~~~ 106 (124)
T 1wel_A 94 RFIQVHPITKKGM 106 (124)
T ss_dssp SCBEEEEECHHHH
T ss_pred cEEEEEECCHHHH
Confidence 9999999887544
No 153
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.81 E-value=2.4e-08 Score=90.22 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=68.1
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.|++.|.+.|+-. ++. ++||++.|++||.|.+|.|+++...+ ...|++||+|.+.++|.+|+..|||..+.|
T Consensus 13 ~p~~tlfVgnLp~--~~t---e~~L~~~F~~~G~I~~v~i~~d~~tg---~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 13 YPMASLYVGDLHP--DVT---EAMLYEKFSPAGPILSIRVCRDMITR---RSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp --CCEEEEESCCT--TCC---HHHHHHHHGGGSCEEEEEEEECTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCC--CCC---HHHHHHHHHhhCCEEEEEEecccCCC---CccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 4788999999742 222 56788999999999999999865433 568999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.+.+...
T Consensus 85 ~~i~~~~~~~ 94 (213)
T 4f02_A 85 KPVRIMWSQR 94 (213)
T ss_dssp EECEEEECCC
T ss_pred cccccccccc
Confidence 9999988754
No 154
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.80 E-value=1.2e-08 Score=86.91 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=66.4
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
+++.|++.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+. |||..|+||
T Consensus 86 ~~~~l~V~nlp~~--~---t~~~l~~~F~~~G~i~~~~i~~~~~~g---~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 86 KTGKIFVGGIGPD--V---RPKEFEEFFSQWGTIIDAQLMLDKDTG---QSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp HCEEEEEEEECTT--C---CHHHHHHHHHTTSCCSEEECCCSSSSS---TTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred CCCeEEECCCCCC--C---CHHHHHHHHHhCccEEEEEEEEcCCCC---ccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 4678999997532 2 246788999999999999998764332 467999999999999999998 899999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.+.|...
T Consensus 157 ~i~V~~a~p 165 (167)
T 2cjk_A 157 KIEIKRAEP 165 (167)
T ss_dssp CEEEEECCC
T ss_pred EEEEeecCC
Confidence 999998753
No 155
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=1.6e-08 Score=82.10 Aligned_cols=84 Identities=17% Similarity=0.076 Sum_probs=67.8
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeE-EEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTR-VLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~-V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++|++.|+-..- -++||++.|++||.|.+ |.|..+ .. ....|++||+|.+.++|.+|+.. ||..++
T Consensus 13 ~~~~~l~V~nLp~~~-----te~~l~~~F~~~G~v~~~v~i~~~-~~---g~~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGC-----SKEEIVQFFSGLEIVPNGMTLPVD-FQ---GRSTGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTC-----CHHHHHHHTTTCCEEEEEEECCBC-SS---SCBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCCCEEEEeCCCCCC-----CHHHHHHHHHhcCCcceeEEEEEC-CC---CCcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 356789999975322 25688999999999997 877765 22 24679999999999999999998 999999
Q ss_pred CeEEEEEeccccccc
Q 016857 352 GRVVRATFYDEERFS 366 (381)
Q Consensus 352 GR~V~a~fy~ee~F~ 366 (381)
||.|.+.......+.
T Consensus 83 gr~i~v~~~~~~~~~ 97 (104)
T 1wg5_A 83 HRYIEIFKSSRAEVR 97 (104)
T ss_dssp SSCCEEEEECTTTSC
T ss_pred CcEEEEEECCHHHHH
Confidence 999999888765543
No 156
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.80 E-value=7.9e-09 Score=86.94 Aligned_cols=75 Identities=12% Similarity=0.229 Sum_probs=64.8
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|++.| + ++ -++||++.|++||.|.+|.|.. ..|++||+|.+.++|.+|+..|||..|+|
T Consensus 37 ~~~~~lfVgn-l---~~---te~~L~~~F~~~G~I~~v~i~~---------~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 100 (121)
T 2bz2_A 37 RKGNTLYVYG-E---DM---TPTLLRGAFSPFGNIIDLSMDP---------PRNCAFVTYEKMESADQAVAELNGTQVES 100 (121)
T ss_dssp CCCCEEEEEC-S---SC---CHHHHHHHHSTTCCCSCEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEcC-C---CC---CHHHHHHHHHccCCEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4688899999 3 23 2578899999999999999962 35899999999999999999999999999
Q ss_pred eEEEEEecccc
Q 016857 353 RVVRATFYDEE 363 (381)
Q Consensus 353 R~V~a~fy~ee 363 (381)
+.|.+.|....
T Consensus 101 ~~l~V~~a~~~ 111 (121)
T 2bz2_A 101 VQLKVNIARKQ 111 (121)
T ss_dssp CBCEEEECCSS
T ss_pred eEEEEEEeCCC
Confidence 99999998653
No 157
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.79 E-value=3.5e-09 Score=89.35 Aligned_cols=82 Identities=16% Similarity=0.228 Sum_probs=68.1
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeE--EEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC-
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTR--VLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR- 348 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~--V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR- 348 (381)
..+++.|+|.|+-.. +. ++||++.|++||.|.. |.|+.+...+ ..+|++||+|.+. +|.+|+..|||.
T Consensus 20 ~~~~~~lfV~nL~~~--~t---e~~L~~~F~~~G~v~~~~v~i~~d~~tg---~~rG~aFV~f~~~-~a~~Ai~~l~g~~ 90 (131)
T 2m2b_A 20 ENANDTIILRNLNPH--ST---MDSILGALAPYAVLSSSNVRVIKDKQTQ---LNRGFAFIQLSTI-EAAQLLQILQALH 90 (131)
T ss_dssp SCCCCEEEECSCCTT--CC---SHHHHHHHGGGCCCCTTTEECCBCSSSS---SBCSCEEEECCHH-HHHHHHHHHTTCC
T ss_pred CCCCCEEEEeCCCCC--CC---HHHHHHHHHHhCCcceeeEEEEEcCCCC---CcceEEEEEECCH-HHHHHHHHhcCCC
Confidence 457889999997422 21 4678899999999977 8988765433 5689999999999 999999999999
Q ss_pred ---eeCCeEEEEEeccc
Q 016857 349 ---FFGGRVVRATFYDE 362 (381)
Q Consensus 349 ---~F~GR~V~a~fy~e 362 (381)
.|+||.|.+.|...
T Consensus 91 ~~~~~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 91 PPLTIDGKTINVEFAKG 107 (131)
T ss_dssp CSCCGGGCCCCCEECCC
T ss_pred CCccCCCEEEEEEECCC
Confidence 99999999999865
No 158
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1.8e-08 Score=79.41 Aligned_cols=75 Identities=13% Similarity=0.239 Sum_probs=62.1
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCC-eeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCC-Cee
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGT-VTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDG-RFF 350 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~-V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnG-R~F 350 (381)
..++.|++.|+-.. + -++||++.|++||. |..+.|. ..|++||+|.+.++|.+|+..||| ..|
T Consensus 6 ~~~~~l~V~nLp~~--~---t~~~l~~~F~~~G~vv~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 70 (93)
T 2cqh_A 6 SGMNKLYIGNLSPA--V---TADDLRQLFGDRKLPLAGQVLL----------KSGYAFVDYPDQNWAIRAIETLSGKVEL 70 (93)
T ss_dssp CCCCCEEEECCCTT--C---CHHHHHHHHHHTTCCCSSCEEE----------ETTEEEECCSCHHHHHHHHHHHTTTCEE
T ss_pred CCCcEEEEeCCCCC--C---CHHHHHHHHHHcCCceEEEEEc----------CCCEEEEEECCHHHHHHHHHHccCCeeE
Confidence 46778899997432 2 25678899999999 6666663 248999999999999999999999 999
Q ss_pred CCeEEEEEeccc
Q 016857 351 GGRVVRATFYDE 362 (381)
Q Consensus 351 ~GR~V~a~fy~e 362 (381)
+|+.|.+.|...
T Consensus 71 ~g~~l~v~~a~~ 82 (93)
T 2cqh_A 71 HGKIMEVDYSVS 82 (93)
T ss_dssp TTEECEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999865
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.78 E-value=3.9e-08 Score=83.05 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=65.1
Q ss_pred eEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEE
Q 016857 276 RVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVV 355 (381)
Q Consensus 276 rVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V 355 (381)
|.|++.|+-.. +. ++||++.|++||.|.+|.|..+.. ....|.+||+|.+.++|.+|+..|||..++|+.|
T Consensus 1 R~l~V~nlp~~--~t---~~~l~~~f~~~G~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 71 (166)
T 3md3_A 1 RVLYVGNLDKA--IT---EDILKQYFQVGGPIANIKIMIDKN----NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 71 (166)
T ss_dssp CEEEEEEEETT--CC---HHHHHHHHGGGSCEEEEEEECCCC-----CCEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEECCCCCc--CC---HHHHHHHHHhcCCeEEEEEEECCC----CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCee
Confidence 57888887422 22 467889999999999999987643 2467999999999999999999999999999999
Q ss_pred EEEeccc
Q 016857 356 RATFYDE 362 (381)
Q Consensus 356 ~a~fy~e 362 (381)
.+.+...
T Consensus 72 ~v~~~~~ 78 (166)
T 3md3_A 72 KINWAFQ 78 (166)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9998854
No 160
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.77 E-value=8.4e-09 Score=78.09 Aligned_cols=75 Identities=11% Similarity=0.160 Sum_probs=60.5
Q ss_pred EEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEE
Q 016857 277 VLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVR 356 (381)
Q Consensus 277 VVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~ 356 (381)
.|++.|+-.. +. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..+| ..|+|+.|.
T Consensus 2 ~l~v~nlp~~--~t---~~~l~~~F~~~G~v~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~ 72 (77)
T 1uaw_A 2 KMFIGGLSWQ--TT---QEGLREYFGQFGEVKECLVMRDPLTK---RSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTID 72 (77)
T ss_dssp CEEEESCCSS--CC---SHHHHHHHTTTSCCCCEEEECCCCSS---SCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCE
T ss_pred EEEEeCCCCC--CC---HHHHHHHHHhcCCEEEEEEecCCCCC---CcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEE
Confidence 3667776422 21 35788999999999999998764332 467999999999999999999999 999999999
Q ss_pred EEec
Q 016857 357 ATFY 360 (381)
Q Consensus 357 a~fy 360 (381)
+.+.
T Consensus 73 v~~a 76 (77)
T 1uaw_A 73 PKVA 76 (77)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8764
No 161
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.77 E-value=1.1e-08 Score=90.25 Aligned_cols=77 Identities=26% Similarity=0.418 Sum_probs=65.7
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccC-CeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYG-TVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG-~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
.++++|++.|+-.. + -++||++.|++|| .|.+|.|... ..|.+||+|.+.++|.+|+..|||+.|+
T Consensus 118 ~~~~~l~v~nl~~~--~---~~~~l~~~f~~~G~~v~~v~i~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 184 (198)
T 1qm9_A 118 PPSATLHLSNIPPS--V---SEEDLKVLFSSNGGVVKGFKFFQK--------DRKMALIQMGSVEEAVQALIDLHNHDLG 184 (198)
T ss_dssp CCCCEEEECCCCTT--C---CHHHHHHHHHHTTSCCCEEEESST--------TSSCEEEECSSHHHHHHHHHHHTSSCCS
T ss_pred CCccEEEEeCCCCC--C---CHHHHHHHHHHcCCCceEEEEEeC--------CCcEEEEEeCCHHHHHHHHHHhcCCccC
Confidence 47899999997532 2 2568899999999 9999999642 2589999999999999999999999999
Q ss_pred -CeEEEEEeccc
Q 016857 352 -GRVVRATFYDE 362 (381)
Q Consensus 352 -GR~V~a~fy~e 362 (381)
|+.|++.|...
T Consensus 185 ~g~~l~v~~a~~ 196 (198)
T 1qm9_A 185 ENHHLRVSFSKS 196 (198)
T ss_dssp SCCSCCEEEECC
T ss_pred CCCeEEEEeecc
Confidence 99999999753
No 162
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.77 E-value=2.8e-08 Score=83.05 Aligned_cols=76 Identities=16% Similarity=0.077 Sum_probs=63.3
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccC-CeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYG-TVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG-~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
....|++.|+-.. + -++||++.|++|| .|..|.|... ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 27 ~~~~l~VgnLp~~--~---te~dL~~~F~~~G~~v~~v~i~~~-------~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 27 KRYRITMKNLPEG--C---SWQDLKDLARENSLETTFSSVNTR-------DFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCEEEEEECSSCC--C---CHHHHHHHHHHHTCCCSEEECSSC-------SSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCEEEEECCCCC--C---CHHHHHHHHHHhCCeeEEEEEEcC-------CCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4567888897522 2 2567889999999 8999998632 246999999999999999999999999999
Q ss_pred eEEEEEecc
Q 016857 353 RVVRATFYD 361 (381)
Q Consensus 353 R~V~a~fy~ 361 (381)
|.|.+.+..
T Consensus 95 r~i~V~~a~ 103 (111)
T 2jvr_A 95 SVITVERDD 103 (111)
T ss_dssp EEEEEEESC
T ss_pred eEEEEEECC
Confidence 999999875
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.76 E-value=2.8e-08 Score=84.53 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=65.2
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEE--------EEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHH
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRV--------LIFEITEPNFPVDEAVRIFVQFERSEQTTKALI 343 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V--------~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~ 343 (381)
+.+++.|+|.|+-.. + -++||++.|++||.|.+| .+... ....|++||+|.+.++|.+|+.
T Consensus 42 ~~~~~~l~V~nLp~~--~---te~~L~~~F~~~G~i~~~~~~~~~di~~~~~------g~~~g~afV~f~~~~~A~~Ai~ 110 (143)
T 3egn_A 42 GEPNCRIYVKNLAKH--V---QEKDLKYIFGRYVDFSSETQRIMFDIRLMKE------GRMKGQAFIGLPNEKAAAKALK 110 (143)
T ss_dssp CSCCSEEEEEEECTT--C---CHHHHHHHHGGGCCTTCHHHHHHCEEEEEEE------TTTEEEEEEECSSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCC--C---CHHHHHHHHHHhCCcccccccceeeEEeccC------CCcccEEEEEeCCHHHHHHHHH
Confidence 568899999997532 2 256788999999998874 33332 1457999999999999999999
Q ss_pred hhCCCeeCCeEEEEEeccc
Q 016857 344 DLDGRFFGGRVVRATFYDE 362 (381)
Q Consensus 344 ~LnGR~F~GR~V~a~fy~e 362 (381)
.|||..|+|+.|.+.|...
T Consensus 111 ~lng~~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 111 EANGYVLFGKPMVVQFARS 129 (143)
T ss_dssp HHTTBEETTEECEEEECCC
T ss_pred HhCCCEeCCcEEEEEECCC
Confidence 9999999999999999853
No 164
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.76 E-value=2.4e-08 Score=93.05 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=70.1
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..+++|++.|+-.. + .-++||++.|++||.|.+|.|..+.. ....|++||+|.+.++|.+|+..|||+.|+|
T Consensus 182 ~~~~~l~v~nlp~~--~--~~~~~l~~~f~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 253 (284)
T 3smz_A 182 LHSRCLCVDRLPPG--F--NDVDALCRALSAVHSPTFCQLACGQD----GQLKGFAVLEYETAEMAEEAQQQADGLSLGG 253 (284)
T ss_dssp TSCSEEEEECCCTT--C--CCHHHHHHHTCSSSCCSEEEEEECSS----CCEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCccEEEEecCCcc--c--CCHHHHHHHhhCCCCeEEEEEEECCC----CCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Confidence 46788999997532 1 01568999999999999999987542 2457999999999999999999999999999
Q ss_pred eEEEEEeccccc
Q 016857 353 RVVRATFYDEER 364 (381)
Q Consensus 353 R~V~a~fy~ee~ 364 (381)
+.|.+.|.....
T Consensus 254 ~~l~v~~a~~~~ 265 (284)
T 3smz_A 254 SHLRVSFCAPGP 265 (284)
T ss_dssp EECEEEECCSSS
T ss_pred eEEEEEEecCCC
Confidence 999999997644
No 165
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.76 E-value=3e-08 Score=92.74 Aligned_cols=82 Identities=18% Similarity=0.346 Sum_probs=66.7
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..+++|+|.|+-... +. ++||++.|++||.|.+|.|+.+... .....|++||+|.+.++|.+|+ .|||+.|+|
T Consensus 208 ~~~~~l~v~nlp~~~-~t---~~~l~~~F~~~G~v~~v~i~~~~~~--tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g 280 (292)
T 2ghp_A 208 LEGREIMIRNLSTEL-LD---ENLLRESFEGFGSIEKINIPAGQKE--HSFNNCCAFMVFENKDSAERAL-QMNRSLLGN 280 (292)
T ss_dssp CTTTEEEEEEECTTT-CC---HHHHHHHHGGGSCEEEEECCSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEETT
T ss_pred CCCceEEEECCCccc-CC---HHHHHHHHhccCCeeEEEEEecCCc--CCCCceEEEEEeCCHHHHHHHH-HhcCCEECC
Confidence 467899999974220 22 4688999999999999999875320 0245799999999999999999 999999999
Q ss_pred eEEEEEecc
Q 016857 353 RVVRATFYD 361 (381)
Q Consensus 353 R~V~a~fy~ 361 (381)
+.|.+.|..
T Consensus 281 ~~i~V~~a~ 289 (292)
T 2ghp_A 281 REISVSLAD 289 (292)
T ss_dssp EEEEEEECC
T ss_pred cEEEEEEec
Confidence 999999975
No 166
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.76 E-value=2.2e-08 Score=78.55 Aligned_cols=77 Identities=16% Similarity=0.216 Sum_probs=64.7
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.++.|++.|+-. ++. ++||++.|++| .|.+|.|+ ...|++||+|.+.++|.+|+..|||..|+|+
T Consensus 4 ~~~~l~V~nLp~--~~t---~~~l~~~F~~~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 68 (88)
T 1wg1_A 4 GSSGILVKNLPQ--DSN---CQEVHDLLKDY-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK 68 (88)
T ss_dssp CCCCEEEESCCS--SCC---HHHHHHHTCSS-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCC--CCC---HHHHHHHHhhC-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 467788889742 222 56788999999 99999995 2468999999999999999999999999999
Q ss_pred EEEEEecccccc
Q 016857 354 VVRATFYDEERF 365 (381)
Q Consensus 354 ~V~a~fy~ee~F 365 (381)
.|++.+...+.+
T Consensus 69 ~l~V~~a~~~~~ 80 (88)
T 1wg1_A 69 DLIVQLQPTDAL 80 (88)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEEcCCCce
Confidence 999999877554
No 167
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=2.9e-08 Score=82.50 Aligned_cols=83 Identities=16% Similarity=0.123 Sum_probs=68.1
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.+.+|.|.||--.- -++||++.|++| .|.+|.|+.+.. + ...|++||+|.+.++|.+|+ .|||..++||
T Consensus 15 ~~~~v~V~nLp~~~-----te~dl~~~F~~~-~v~~v~i~~d~~-g---~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr 83 (109)
T 2dnn_A 15 DDLYVSVHGMPFSA-----MENDVRDFFHGL-RVDAVHLLKDHV-G---RNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR 83 (109)
T ss_dssp HHHEEEEECCCSSC-----CHHHHHHHTTTS-CCCEEEECCCTT-C---CCCSEEEEECSSHHHHHHHH-HTTTEEETTE
T ss_pred CCCEEEEeCCCCCC-----CHHHHHHHhccC-CeeEEEEEECCC-C---CCCeEEEEEECCHHHHHHHH-hcCCCeECCe
Confidence 35689999975322 256889999999 899999987643 2 46899999999999999999 7999999999
Q ss_pred EEEEEecccccccc
Q 016857 354 VVRATFYDEERFSK 367 (381)
Q Consensus 354 ~V~a~fy~ee~F~~ 367 (381)
.|.+.......|..
T Consensus 84 ~i~V~~a~~~~~~~ 97 (109)
T 2dnn_A 84 YVEVSPATERQWVA 97 (109)
T ss_dssp EEEEEECCHHHHHH
T ss_pred EEEEEECCccchhh
Confidence 99998887766543
No 168
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.75 E-value=1.4e-08 Score=87.73 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=68.6
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCC---eeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGT---VTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~---V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
..++|+|.|+--.- -++||++.|++||. |.+|.|..+.. + ...|++||+|.+.++|.+|+. |||..|
T Consensus 43 ~~~~lfVgnLp~~~-----te~dL~~~F~~~G~v~~v~~v~i~~d~~-g---~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 43 EGFVVKLRGLPWSC-----SVEDVQNFLSDCTIHDGAAGVHFIYTRE-G---RQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp TTCEEEEESCCTTC-----CHHHHHHHTTTCCCSSSSTTEEEEECSS-S---CEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCEEEEeCCCCCC-----CHHHHHHHHHHhCCcCceeEEEEEECCC-C---CCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 56789999975322 25688999999999 89999987654 2 468999999999999999999 999999
Q ss_pred CCeEEEEEecccccc
Q 016857 351 GGRVVRATFYDEERF 365 (381)
Q Consensus 351 ~GR~V~a~fy~ee~F 365 (381)
+||.|.+.+.....+
T Consensus 113 ~gr~i~V~~a~~~e~ 127 (136)
T 2hgl_A 113 GHRYIEVFKSHRTEM 127 (136)
T ss_dssp SSSEEEEEECCHHHH
T ss_pred CCEEEEEEECChHHH
Confidence 999999998876544
No 169
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.73 E-value=2.4e-08 Score=79.01 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=62.9
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|++.|+-.. + -++||++.|++||.|..| ... ....|++||+|.+.++|.+|+..|||..|+|
T Consensus 14 ~~~~~l~V~nL~~~--~---t~~~l~~~F~~~g~v~~~---~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 14 RAARTLLAKNLSFN--I---TEDELKEVFEDALEIRLV---SQD-----GKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp TGGGEEEEESCCSS--C---CHHHHHHHHCSEEEECCE---EET-----TEEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred CCCCEEEEeCCCCC--C---CHHHHHHHHhhCCcEEEe---CCC-----CCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 46889999997422 2 246788999999998777 211 1357999999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.+.|...
T Consensus 81 ~~l~v~~a~~ 90 (96)
T 1fjc_A 81 RSVSLYYTGE 90 (96)
T ss_dssp EEEEEEECSS
T ss_pred eEEEEEEcCC
Confidence 9999999754
No 170
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=2.4e-08 Score=81.32 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=65.5
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
....++|+|.|+-... -++||++.|++||.| +|.|+.+. . ....|++||+|.+.++|.+|+ .+||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~-----te~~l~~~F~~~G~~-~v~i~~d~-~---g~~~G~afV~F~~~~~a~~Al-~~~~~~~~ 80 (102)
T 1wez_A 12 STTGHCVHMRGLPYRA-----TENDIYNFFSPLNPM-RVHIEIGP-D---GRVTGEADVEFATHEDAVAAM-AKDKANMQ 80 (102)
T ss_dssp CSSSCEEEEESCCTTC-----CHHHHHHSSCSCCCS-EEEEEESS-S---SCEEEEEEEECSSSHHHHHHH-TTSSCCSS
T ss_pred CCCCCEEEEeCCCCCC-----CHHHHHHHHHHcCce-EEEEEECC-C---CCEeeEEEEEECCHHHHHHHH-HhCCCeEC
Confidence 3467899999975322 257889999999955 99998764 2 256899999999999999999 57999999
Q ss_pred CeEEEEEecccc
Q 016857 352 GRVVRATFYDEE 363 (381)
Q Consensus 352 GR~V~a~fy~ee 363 (381)
||.|.+......
T Consensus 81 gr~i~V~~~~~~ 92 (102)
T 1wez_A 81 HRYVELFLNSTA 92 (102)
T ss_dssp SSCCEEEEECCC
T ss_pred CcEEEEEECCCC
Confidence 999999877653
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.71 E-value=3.9e-08 Score=87.17 Aligned_cols=81 Identities=16% Similarity=0.220 Sum_probs=65.6
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.++.|+|.|+-.. +. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|+
T Consensus 27 ~~~~l~V~nLp~~--~t---~~~l~~~f~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 98 (216)
T 2qfj_A 27 IMSRVYVGSIYYE--LG---EDTIRQAFAPFGPIKSIDMSWDSVTM---KHKGFAFVEYEVPEAAQLALEQMNSVMLGGR 98 (216)
T ss_dssp HHTEEEEECCCTT--CC---HHHHHHHHGGGSCEEEEEECCC-CC----CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred cCCEEEEECCCCC--CC---HHHHHHHHHhCCCEEEEEEeecCCCC---ccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence 4778999997432 22 56788999999999999998754332 4679999999999999999999999999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.+.+...
T Consensus 99 ~l~v~~~~~ 107 (216)
T 2qfj_A 99 NIKVGRPSN 107 (216)
T ss_dssp CCEEECCSC
T ss_pred eEEEecCCC
Confidence 999987654
No 172
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=7.1e-08 Score=76.36 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=61.6
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..++.|++.|+-.. + -++||++.|++||.|.+|.+.. .. .. ++||+|.+.++|.+|+. |||..|+|
T Consensus 6 ~~~~~l~V~nl~~~--~---t~~~l~~~F~~~G~v~~v~~~~--~~-----g~-~afV~f~~~~~a~~ai~-l~g~~~~g 71 (94)
T 2e5g_A 6 SGLRSVFVSGFPRG--V---DSAQLSEYFLAFGPVASVVMDK--DK-----GV-FAIVEMGDVGAREAVLS-QSQHSLGG 71 (94)
T ss_dssp TTCCEEEEECCCTT--C---CHHHHHHHGGGTSCEEEEEECS--SS-----CC-EEEEEESSHHHHHHHHT-CSCCEETT
T ss_pred CCCCEEEEECCCCC--C---CHHHHHHHHHhcCCeEEEEEcC--CC-----Cc-EEEEEECCHHHHHHHHh-cCCeEECC
Confidence 35678999997422 2 2568889999999999983322 11 12 89999999999999999 99999999
Q ss_pred eEEEEEecccccc
Q 016857 353 RVVRATFYDEERF 365 (381)
Q Consensus 353 R~V~a~fy~ee~F 365 (381)
+.|.+.+......
T Consensus 72 ~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 72 HRLRVRPREQKEF 84 (94)
T ss_dssp EECCCBCSCCSCC
T ss_pred EEEEEEECCcCCC
Confidence 9999987755433
No 173
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.71 E-value=3.9e-08 Score=89.84 Aligned_cols=77 Identities=26% Similarity=0.429 Sum_probs=65.6
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccC-CeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYG-TVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG-~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
.++++|+|.|+-. ++. ++||++.|++|| .|..|.|... ..|++||+|.+.++|.+|+..|||+.|+
T Consensus 149 ~~~~~l~V~nlp~--~~t---~~~l~~~f~~~G~~i~~v~i~~~--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 215 (229)
T 2adc_A 149 PPSATLHLSNIPP--SVS---EEDLKVLFSSNGGVVKGFKFFQK--------DRKMALIQMGSVEEAVQALIDLHNHDLG 215 (229)
T ss_dssp CSCSEEEEECCCT--TCC---HHHHHHHHHTTSCCEEEEEECSS--------STTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCc--cCC---HHHHHHHHHHcCCCeeEEEEEEC--------CCcEEEEEECCHHHHHHHHHHHCCCccC
Confidence 4689999999743 222 578899999999 9999999642 2589999999999999999999999999
Q ss_pred -CeEEEEEeccc
Q 016857 352 -GRVVRATFYDE 362 (381)
Q Consensus 352 -GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 216 ~g~~l~v~~a~~ 227 (229)
T 2adc_A 216 ENHHLRVSFSKS 227 (229)
T ss_dssp SSCBCEEEECSS
T ss_pred CCCeEEEEEecC
Confidence 99999999753
No 174
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.71 E-value=5.3e-08 Score=75.30 Aligned_cols=71 Identities=24% Similarity=0.318 Sum_probs=59.7
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhcc----C-------CeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHH
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKY----G-------TVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKA 341 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKY----G-------~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kA 341 (381)
.+++.|++.|+-.. + -++||++.|++| | .|.+|.|..+ .|++||+|.+.++|.+|
T Consensus 4 ~~~~~l~V~nLp~~--~---t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---------kg~afV~f~~~~~a~~A 69 (87)
T 2hzc_A 4 GSARRLYVGNIPFG--I---TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---------KNFAFLEFRSVDETTQA 69 (87)
T ss_dssp GGGGEEEEESCCTT--C---CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---------SSEEEEEESSHHHHHHH
T ss_pred CCCCEEEEeCCCCC--C---CHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---------CcEEEEEcCCHHHHHHH
Confidence 36788999997432 2 246788888999 8 9999998742 58999999999999999
Q ss_pred HHhhCCCeeCCeEEEEE
Q 016857 342 LIDLDGRFFGGRVVRAT 358 (381)
Q Consensus 342 v~~LnGR~F~GR~V~a~ 358 (381)
+ .|||..|+||.|.+.
T Consensus 70 ~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 70 M-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp G-GGTTCEETTEECEEE
T ss_pred H-hcCCCEECCeEEEEe
Confidence 9 999999999999886
No 175
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.16 E-value=1.7e-09 Score=89.05 Aligned_cols=82 Identities=15% Similarity=0.268 Sum_probs=66.8
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeE--------EEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHh
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTR--------VLIFEITEPNFPVDEAVRIFVQFERSEQTTKALID 344 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~--------V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~ 344 (381)
.+++.|++.|+-.. + -++||++.|++||.|.. |.|+.+...+ ...|++||+|.+.++|.+|+..
T Consensus 5 ~~~~~l~V~nLp~~--~---t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~Ai~~ 76 (116)
T 2lcw_A 5 SDNNTIFVQGLGEN--V---TIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG---KLKGEATVSFDDPPSAKAAIDW 76 (116)
Confidence 36788899997421 2 24578899999999998 7887653322 4579999999999999999999
Q ss_pred hCCCeeCCeEEEEEeccc
Q 016857 345 LDGRFFGGRVVRATFYDE 362 (381)
Q Consensus 345 LnGR~F~GR~V~a~fy~e 362 (381)
|||..|+|+.|.+.+...
T Consensus 77 l~g~~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 77 FDGKEFSGNPIKVSFATR 94 (116)
Confidence 999999999999999865
No 176
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.70 E-value=4.3e-08 Score=84.44 Aligned_cols=76 Identities=21% Similarity=0.260 Sum_probs=62.5
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.+++|++.|+-.. + -++||++.|++||.|..| . .. ....|++||+|.+.++|.+|+..|||+.|+||
T Consensus 98 ~~~~l~v~nlp~~--~---t~~~l~~~F~~~g~v~~~--~---~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (175)
T 1fje_B 98 AARTLLAKNLSFN--I---TEDELKEVFEDALEIRLV--S---QD---GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 164 (175)
T ss_dssp GGGEEEEESCCSS--C---CHHHHHHHCTTCSEEEEE--C---SS---SSCCSEEEEECSSHHHHHHHHHHHTEEEETTE
T ss_pred cCCEEEEeCCCCC--C---CHHHHHHHHHhcCeEEEe--c---CC---CCCceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 5789999997532 2 246889999999999877 1 11 24579999999999999999999999999999
Q ss_pred EEEEEeccc
Q 016857 354 VVRATFYDE 362 (381)
Q Consensus 354 ~V~a~fy~e 362 (381)
.|.+.|...
T Consensus 165 ~i~v~~a~~ 173 (175)
T 1fje_B 165 SVSLYYTGE 173 (175)
T ss_dssp EEEEEECSS
T ss_pred EEEEEecCC
Confidence 999999753
No 177
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=5.8e-08 Score=77.54 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=62.2
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
..+++.|+|.|+-.. +. ++||++.|++|+ .|.|+.+... ....|++||+|.+.++|.+|+..|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~--~t---~~~l~~~F~~~~---~~~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 12 SQPSKTLFVKGLSED--TT---EETLKESFDGSV---RARIVTDRET---GSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp SCCCSSEEEECCCTT--CC---HHHHHHTSTTCS---EEEEEECSSS---CSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCc--cC---HHHHHHHhcCCe---EEEEEecCCC---CCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 347888999997432 22 457788888875 5555554322 245799999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.|...
T Consensus 81 g~~l~V~~a~~ 91 (102)
T 2fc8_A 81 GNKVTLDWAKP 91 (102)
T ss_dssp TEECEEEECCC
T ss_pred CeEEEEEEecC
Confidence 99999999854
No 178
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.68 E-value=1e-08 Score=83.61 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=67.7
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCC---eeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCe
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGT---VTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRF 349 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~---V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~ 349 (381)
....+|+|.|+--.-. ++||++.|++||. |.+|.|..+.. + ...|++||+|.+.++|.+|+. |||..
T Consensus 9 ~~~~~l~V~nLp~~~t-----e~~l~~~F~~~g~~~~v~~v~i~~~~~-g---~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCT-----MEDVLNFFSDCRIRNGENGIHFLLNRD-G---KRRGDALIEMESEQDVQKALE-KHRMY 78 (107)
T ss_dssp SSCCEEEEECCCSSCC-----SHHHHHHTTTSCBTTTTTTEECCCCTT-S---TTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred CCccEEEEeCCCCCCC-----HHHHHHHHHhcCCcCCcceEEEEECCC-C---CEeeEEEEEECCHHHHHHHHH-hCcce
Confidence 3577899999753221 3578888999888 99999987543 2 468999999999999999999 99999
Q ss_pred eCCeEEEEEecccccc
Q 016857 350 FGGRVVRATFYDEERF 365 (381)
Q Consensus 350 F~GR~V~a~fy~ee~F 365 (381)
++||.|.+.+.....+
T Consensus 79 ~~gr~i~V~~a~~~~~ 94 (107)
T 2lmi_A 79 MGQRYVEVYEINNEDV 94 (107)
T ss_dssp SSSSCCCCEECCHHHH
T ss_pred eCCeEEEEEECCHHHH
Confidence 9999999999876554
No 179
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.68 E-value=4.8e-08 Score=78.22 Aligned_cols=77 Identities=19% Similarity=0.131 Sum_probs=64.3
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
+++.|++.|+-.. + -++||++.|++||.|.+|.|+.+. . ....|++||+|.+.++|.+|+. ||..++|+
T Consensus 8 ~~~~l~V~nLp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~-~---g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 8 MPNTVFVGGIDVR--M---DETEIRSFFARYGSVKEVKIITDR-T---GVSKGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp EEEEEEEECCCTT--C---CHHHHHHHHGGGSCEEEEEEEECT-T---SCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred CCCEEEEeCCCCC--C---CHHHHHHHHHhCCCeEEEEEEECC-C---CCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 5788999997422 2 256788999999999999999864 2 2467999999999999999999 99999999
Q ss_pred EEEEEecc
Q 016857 354 VVRATFYD 361 (381)
Q Consensus 354 ~V~a~fy~ 361 (381)
.|.+.+.-
T Consensus 77 ~l~v~~a~ 84 (102)
T 2xs2_A 77 KLKLGPAI 84 (102)
T ss_dssp ECEEEEEE
T ss_pred EEEEEECC
Confidence 99987765
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.66 E-value=5.2e-08 Score=88.97 Aligned_cols=79 Identities=27% Similarity=0.338 Sum_probs=67.0
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
+.++++|++.|+-. .++. ++||++.|++||.|.+|.|..+. .|++||+|.+.++|.+|+..|||..|+
T Consensus 31 ~~~~~~l~V~nLp~-~~~t---e~~L~~~F~~~G~i~~v~i~~~~--------~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 31 GAGNSVLLVSNLNP-ERVT---PQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp CCCCSEEEEESCCT-TTCC---HHHHHHHHHHHTCEEEEEECCTT--------SCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCc-ccCC---HHHHHHHHHhCCCeEEEEEEECC--------CCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 45789999999743 1222 46788999999999999998632 588999999999999999999999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.+...
T Consensus 99 g~~l~v~~a~~ 109 (229)
T 2adc_A 99 GKPIRITLSKH 109 (229)
T ss_dssp SSBCEEECCSC
T ss_pred CeEEEEEEecC
Confidence 99999999864
No 181
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=7.2e-08 Score=79.48 Aligned_cols=79 Identities=25% Similarity=0.366 Sum_probs=65.7
Q ss_pred CCCCCceEEEEecccCC----CCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhh
Q 016857 270 FNGPPTRVLLLRNMVGP----GEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDL 345 (381)
Q Consensus 270 ~~g~pSrVVvL~NMv~~----~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~L 345 (381)
..|+|--+|++..+-.. ...+++|..+|.+.|..||.|..|.|.. .+.||+|.+.++|.+|+. |
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~-----------d~~fVtF~d~~sAl~AI~-l 77 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ-----------GQMLVTFADSHSALSVLD-V 77 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET-----------TEEEEECSCSHHHHHHHH-G
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEec-----------CcEEEEEcChHHHHHHHh-c
Confidence 45777777777554322 1256889999999999999999999974 349999999999999998 9
Q ss_pred CCCeeCCeEEEEEec
Q 016857 346 DGRFFGGRVVRATFY 360 (381)
Q Consensus 346 nGR~F~GR~V~a~fy 360 (381)
||..++||.|++.+-
T Consensus 78 dG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 78 DGMKVKGRAVKISGP 92 (95)
T ss_dssp GGSEETTEEEEEECC
T ss_pred CCeeeCCeEEEEecc
Confidence 999999999999864
No 182
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.66 E-value=5e-08 Score=80.74 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=57.2
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
....|++.|+-.. +. ++||++.|++||.|..|.|+.+ |++||+|.+.++|.+|+..|||..|+|+
T Consensus 15 ~~~~l~V~nLp~~--~t---~~~l~~~F~~~G~v~~~~i~~~----------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 15 SENRVVVSGLPPS--GS---WQDLKDHMREAGDVCYADVYRD----------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp --CCEEEEECCSS--CC---TTHHHHHHGGGSCEEEEEECTT----------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCcEEEEeCCCCC--CC---HHHHHHHHHhcCCeEEEEEecC----------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3567888897522 22 3467789999999999999742 8999999999999999999999999999
Q ss_pred EEEEEec
Q 016857 354 VVRATFY 360 (381)
Q Consensus 354 ~V~a~fy 360 (381)
.|.+.|+
T Consensus 80 ~~~~~~i 86 (115)
T 3beg_B 80 EGETAYI 86 (115)
T ss_dssp TSCCCBC
T ss_pred EeeeEEE
Confidence 8544444
No 183
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.65 E-value=9.9e-09 Score=82.09 Aligned_cols=80 Identities=18% Similarity=0.081 Sum_probs=62.5
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
.+++.|++.|+-.. +. ++||++.|++||.|.. .++.+... ....|++||+|.+.++|.+|+. |||..|+|
T Consensus 15 ~~~~~l~V~nLp~~--~t---~~~l~~~F~~~G~v~~-~~~~~~~~---g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g 84 (101)
T 1fj7_A 15 TTPFNLFIGNLNPN--KS---VAELKVAISELFAKND-LAVVDVRT---GTNRKFGYVDFESAEDLEKALE-LTGLKVFG 84 (101)
T ss_dssp SCSEEEEEECCCTT--SC---HHHHHHHHHHHHHHHT-CCCCEEEE---ETTTTEEEEEESSHHHHHHHHH-GGGCCBTT
T ss_pred CCCCEEEEeCCCCC--CC---HHHHHHHHHHhCCcce-EEEecCCC---CCcCcEEEEEECCHHHHHHHHh-cCCcEECC
Confidence 36788999997422 22 4678899999999888 33332221 1357999999999999999999 99999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.+.+...
T Consensus 85 ~~l~V~~a~~ 94 (101)
T 1fj7_A 85 NEIKLEKPKG 94 (101)
T ss_dssp BCCEEECCSC
T ss_pred cEEEEEEcCC
Confidence 9999998754
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.64 E-value=6.4e-08 Score=91.58 Aligned_cols=81 Identities=15% Similarity=0.242 Sum_probs=67.5
Q ss_pred CCceEEEEecccCCC---CCh-hhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC
Q 016857 273 PPTRVLLLRNMVGPG---EVD-DELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR 348 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~---El~-dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR 348 (381)
..++.|.|.|+-..- .+. +..+++|++.|++||.|++|.|.. .+|++||+|.+.++|..|+..|||.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---------~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---------SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 467899999874221 121 346899999999999999999984 3589999999999999999999999
Q ss_pred ee------------CCeEEEEEeccc
Q 016857 349 FF------------GGRVVRATFYDE 362 (381)
Q Consensus 349 ~F------------~GR~V~a~fy~e 362 (381)
.| +|+.|.|.|...
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred EEeccccccccccCCCCEEEEEEccC
Confidence 99 899999999865
No 185
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.64 E-value=1.6e-07 Score=81.95 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=67.4
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..++.|+|.|+-. ++. ++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+.. +|..|+|
T Consensus 11 ~~~~~l~V~nLp~--~~t---e~~l~~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~A~~A~~~-~~~~~~g 81 (196)
T 1l3k_A 11 EQLRKLFIGGLSF--ETT---DESLRSHFEQWGTLTDCVVMRDPNTK---RSRGFGFVTYATVEEVDAAMNA-RPHKVDG 81 (196)
T ss_dssp GGGGEEEEESCCT--TCC---HHHHHHHHGGGSCEEEEEEEECTTTC---CEEEEEEEEESSHHHHHHHHHT-CSCEETT
T ss_pred CCCCEEEEeCCCC--CCC---HHHHHHHHHhCCCEEEEEEEEcCCCC---CccceEEEEeCCHHHHHHHHhc-CCCEECC
Confidence 4688999999743 222 56788999999999999999864432 4579999999999999999987 9999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.+.+...
T Consensus 82 ~~l~v~~~~~ 91 (196)
T 1l3k_A 82 RVVEPKRAVS 91 (196)
T ss_dssp EECEEEECCC
T ss_pred EEeeeecccC
Confidence 9999998754
No 186
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.62 E-value=2.1e-08 Score=75.71 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=53.6
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEe
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATF 359 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~f 359 (381)
++||++.|++||.|.+|.|+.+...+ ...|++||+|.+.++|.+|+.. +|..++|+.|.+.+
T Consensus 13 ~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 13 EEKIREYFGGFGEVESIELPMDNKTN---KRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp HHHHHHHHHHHSCCSEECCCCSCCCS---SSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred HHHHHHHHHhcCCeEEEEEEecCCCC---CcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 56788999999999999998754432 4679999999999999999996 89999999998875
No 187
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=4.8e-08 Score=83.03 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=67.9
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCe----eEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTV----TRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR 348 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V----~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR 348 (381)
....+|+|.|+--.- -++||++.|++||.| .+|.|+.+. .+ ...|++||+|.+.++|.+|+.. ||.
T Consensus 21 ~~~~~v~V~nLp~~~-----te~dl~~~F~~~g~v~g~v~~v~i~~d~-~g---r~~G~aFV~F~~~~~A~~Al~~-~~~ 90 (123)
T 2dha_A 21 ENQVIVRMRGLPFTA-----TAEEVVAFFGQHCPITGGKEGILFVTYP-DG---RPTGDAFVLFACEEYAQNALRK-HKD 90 (123)
T ss_dssp CSCCEEEECSCCTTC-----CHHHHHHHHHTTSCCTTGGGGEEEEECT-TS---CEEEEEEECCSSHHHHHHHHTT-TTE
T ss_pred CCCCEEEEeCCCCCC-----CHHHHHHHHHhhCCccCCcceEEEEECC-CC---CEeeEEEEEECCHHHHHHHHHh-CCC
Confidence 457899999974221 357889999999985 689988753 22 4689999999999999999997 999
Q ss_pred eeCCeEEEEEeccccccc
Q 016857 349 FFGGRVVRATFYDEERFS 366 (381)
Q Consensus 349 ~F~GR~V~a~fy~ee~F~ 366 (381)
.++||.|.+.......+.
T Consensus 91 ~l~gR~i~V~~a~~~e~~ 108 (123)
T 2dha_A 91 LLGKRYIELFRSTAAEVQ 108 (123)
T ss_dssp ESSSCEECCEEECHHHHH
T ss_pred eeCCeEEEEEECCHHHHH
Confidence 999999999888765544
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.59 E-value=3e-07 Score=85.66 Aligned_cols=84 Identities=15% Similarity=0.308 Sum_probs=69.5
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
...+.|++.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+..|||..|+|
T Consensus 93 ~~~~~l~v~nlp~~--~---t~~~l~~~f~~~G~i~~~~i~~~~~~g---~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 93 PTDALLCVANLPPS--L---TQQQFEELVRPFGSLERCFLVYSERTG---QSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp CCSCEEEEESCCTT--C---CHHHHHHHHGGGSCEEEEEEEECTTTC---CEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCc--C---CHHHHHHHHHhcCCeeEEEEEeeCCCC---ccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 35678899997422 2 256888999999999999998765433 467999999999999999999999999999
Q ss_pred eEEEEEeccccc
Q 016857 353 RVVRATFYDEER 364 (381)
Q Consensus 353 R~V~a~fy~ee~ 364 (381)
+.|.+.+.....
T Consensus 165 ~~i~v~~a~~~~ 176 (284)
T 3smz_A 165 RTLYVHWTDAGQ 176 (284)
T ss_dssp EECEEEECCGGG
T ss_pred cEEEEEECCCCC
Confidence 999999987543
No 189
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.58 E-value=1.9e-07 Score=92.65 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=64.6
Q ss_pred ccCCCCCceEEEEecc-cCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC
Q 016857 268 VNFNGPPTRVLLLRNM-VGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD 346 (381)
Q Consensus 268 ~~~~g~pSrVVvL~NM-v~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln 346 (381)
+.....||+.|++.|+ +.- .+ -++||++.|++||.|.+|.|+. ++|++||+|.+.++|.+|++.||
T Consensus 11 v~~~~~ps~~l~VgN~gl~~-~~---te~~L~~~F~~~G~V~~v~~~~---------~kgfaFV~f~~~~~A~~Ai~~ln 77 (345)
T 3tht_A 11 IETVSYATQSLVVANGGLGN-GV---SRNQLLPVLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLN 77 (345)
T ss_dssp CCCCSSCCSEEEEETCSGGG-TC---CHHHHHHHHHTTSCEEEEECCT---------TCSEEEEEESSHHHHHHHHHHTT
T ss_pred ceecCCCCCEEEEEcCCCCC-CC---CHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhC
Confidence 4445679999999995 211 12 2567889999999999998853 36999999999999999999999
Q ss_pred CCee---CCe--EEEEEeccc
Q 016857 347 GRFF---GGR--VVRATFYDE 362 (381)
Q Consensus 347 GR~F---~GR--~V~a~fy~e 362 (381)
|..+ .|+ .+.+.|...
T Consensus 78 G~~~~~~~g~~~~ly~~~~~~ 98 (345)
T 3tht_A 78 GKEVVDDLGQKITLYLNFVEK 98 (345)
T ss_dssp TCEEECTTSCEEECEEEECSS
T ss_pred CCccccccCCceEEEEEEeec
Confidence 9988 355 567777754
No 190
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=2.2e-07 Score=76.44 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=61.6
Q ss_pred CceEEEEecccCCCCC--hhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 274 PTRVLLLRNMVGPGEV--DDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 274 pSrVVvL~NMv~~~El--~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
.++.|.|..-+...+. .+--++||++.|++||.|.+|.|+. ...|++||+|.+.++|.+|+..++| +.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~--------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~ 78 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS--------KKPGTAVVEFATVKAAELAVQNEVG--LV 78 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES--------SSSSEEEEEESCHHHHHHHHHTCCB--CS
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc--------CCCCEEEEEECCHHHHHHHHHhcCC--CC
Confidence 3556667665543322 1124678999999999999999983 3469999999999999999999776 68
Q ss_pred CeEEEEEecccc
Q 016857 352 GRVVRATFYDEE 363 (381)
Q Consensus 352 GR~V~a~fy~ee 363 (381)
|+.|++.|....
T Consensus 79 g~~l~V~~a~~~ 90 (100)
T 2d9o_A 79 DNPLKISWLEGQ 90 (100)
T ss_dssp SSBCEEECSSCC
T ss_pred CCeEEEEEccCC
Confidence 999999987543
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.56 E-value=7.8e-08 Score=84.79 Aligned_cols=76 Identities=26% Similarity=0.328 Sum_probs=64.2
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCeE
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGRV 354 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~ 354 (381)
+++|++.|+-. .++. ++||++.|++||.|.+|.|..+. .|++||+|.+.++|.+|+..|||..|+|+.
T Consensus 3 ~~~l~v~nlp~-~~~~---~~~l~~~F~~~G~i~~v~i~~~~--------~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNP-ERVT---PQSLFILFGVYGDVQRVKILFNK--------KENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp CCEEEEECCCS-SSCC---HHHHHHHHHTTCCCSEEECSTTC--------SSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred CcEEEEeCCCc-ccCC---HHHHHHHHHhcCCEEEEEEEeCC--------CCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 57899999743 1222 46788999999999999997532 588999999999999999999999999999
Q ss_pred EEEEeccc
Q 016857 355 VRATFYDE 362 (381)
Q Consensus 355 V~a~fy~e 362 (381)
|.+.+...
T Consensus 71 l~v~~a~~ 78 (198)
T 1qm9_A 71 IRITLSKH 78 (198)
T ss_dssp CEEEECCC
T ss_pred EEEEEecC
Confidence 99999864
No 192
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.55 E-value=3e-08 Score=86.05 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=66.3
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
..++|+|.|+-... -++||++.|++|| |++|.|..+.. ....|++||+|++.++|.+|+ .|||..|+||
T Consensus 45 ~~~~lfV~nLp~~~-----te~dL~~~F~~~G-i~~v~i~~d~~----g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR 113 (139)
T 2hgn_A 45 TGHCVHMRGLPYKA-----TENDIYNFFSPLN-PVRVHIEIGPD----GRVTGEADVEFATHEEAVAAM-SKDRANMQHR 113 (139)
T ss_dssp CCCCEECCSCCTTC-----CHHHHHHHHCSCC-CSEEECCCSSS----SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred CCCEEEEeCCCCCC-----CHHHHHHHHHhcC-CeEEEEEECCC----CCCceEEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence 56789999975322 2578999999999 67999987643 256899999999999999999 8999999999
Q ss_pred EEEEEeccccccc
Q 016857 354 VVRATFYDEERFS 366 (381)
Q Consensus 354 ~V~a~fy~ee~F~ 366 (381)
.|.+.........
T Consensus 114 ~i~V~~a~~~~~~ 126 (139)
T 2hgn_A 114 YIELFLNSTTGAS 126 (139)
T ss_dssp CCCCEECCCSCC-
T ss_pred EEEEEECCCCCCC
Confidence 9999887765443
No 193
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.53 E-value=4e-07 Score=82.32 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=64.3
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
.+++|++.|+-.. + -+++|++.|++||.|.+|.|+++.. ....|++||+|++.++|.+|+..++. .|+||
T Consensus 108 ~~~~l~V~nLp~~--~---t~~~L~~~F~~~G~v~~v~i~~~~~----~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~Gr 177 (193)
T 2voo_A 108 KNRSVYIKGFPTD--A---TLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVETPGQ-KYKET 177 (193)
T ss_dssp HHTEEEEECCCTT--C---CHHHHHHHHTTSCCEEEEEEEECTT----CCEEEEEEEEESSHHHHHHHHHCTTC-EETTE
T ss_pred ccCEEEecCCCCc--C---CHHHHHHHHhcCCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHhCCC-eECCE
Confidence 3678999997522 2 2578899999999999999998543 24689999999999999999988765 89999
Q ss_pred EEEEEecc
Q 016857 354 VVRATFYD 361 (381)
Q Consensus 354 ~V~a~fy~ 361 (381)
.|.+.+..
T Consensus 178 ~l~V~~~~ 185 (193)
T 2voo_A 178 DLLILFKD 185 (193)
T ss_dssp ECEEEETT
T ss_pred EEEEEEhH
Confidence 99998754
No 194
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.49 E-value=1.8e-07 Score=80.08 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=65.0
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCee--EEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVT--RVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~--~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
.+++|+|.||--.- -++||++.|++| .|+ +|.|..+.. + ...|++||+|.+.++|.+|+.. ++..|+
T Consensus 41 ~~~~lfVgnLp~~~-----te~dL~~~F~~~-~i~~~~v~i~~d~~-G---rsrGfaFV~F~~~e~A~~Al~~-~~~~l~ 109 (126)
T 2hgm_A 41 NDGFVRLRGLPFGC-----TKEEIVQFFSGL-EIVPNGITLPVDPE-G---KITGEAFVQFASQELAEKALGK-HKERIG 109 (126)
T ss_dssp SCCEEEEECCCTTC-----CHHHHHHHTTTS-CEEEEEEECCCCSS-S---SSCSEEEEEESSTTHHHHHHTT-TTCCBT
T ss_pred CCCEEEEeCCCCCC-----CHHHHHHHHhcC-CceeeEEEEEECCC-C---CCceEEEEEECCHHHHHHHHHH-CCCEEC
Confidence 56789999975322 256889999999 566 899887543 2 4689999999999999999985 779999
Q ss_pred CeEEEEEecccccc
Q 016857 352 GRVVRATFYDEERF 365 (381)
Q Consensus 352 GR~V~a~fy~ee~F 365 (381)
||.|.+.......+
T Consensus 110 gR~I~V~~a~~~e~ 123 (126)
T 2hgm_A 110 HRYIEVFKSSQEEV 123 (126)
T ss_dssp TBCCCCEEECHHHH
T ss_pred CEEEEEEECCHHHh
Confidence 99999988776554
No 195
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.48 E-value=3.6e-07 Score=77.69 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=62.7
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
+++.|.+.|+-.. + -++||++.|++||.|.+|.|..+...+ ...|++||+|.+.++|.+|+.. +..++|+
T Consensus 2 ~~~~l~v~nLp~~--~---t~~~l~~~F~~~G~i~~v~i~~~~~~g---~~~g~afV~f~~~~~a~~A~~~--~~~~~g~ 71 (167)
T 2cjk_A 2 ESCKMFIGGLNWD--T---TEDNLREYFGKYGTVTDLKIMKDPATG---RSRGFGFLSFEKPSSVDEVVKT--QHILDGK 71 (167)
T ss_dssp GGGEEEECSCCTT--C---CHHHHHHHHTTTCCEEEEECCCCTTTS---SCCSCEEEEESSTHHHHHHHHS--CCEETTE
T ss_pred CCcEEEEeCCCCC--C---CHHHHHHHHHhCCCEEEEEEEECCCCC---CccceEEEEEccHHHHHHHHhc--ccccCCe
Confidence 5788999997432 2 256788999999999999998764332 4679999999999999999995 5688888
Q ss_pred EEEEEecc
Q 016857 354 VVRATFYD 361 (381)
Q Consensus 354 ~V~a~fy~ 361 (381)
.|.+.+..
T Consensus 72 ~i~v~~~~ 79 (167)
T 2cjk_A 72 VIDPKRAI 79 (167)
T ss_dssp ECCCEECC
T ss_pred Eccccccc
Confidence 88887764
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.46 E-value=9.2e-07 Score=82.64 Aligned_cols=88 Identities=11% Similarity=0.137 Sum_probs=67.6
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++.|+|.|+-..-. ++||++.|++||.|.+|.|..+... ..|++||+|.+.++|.+|+. |||..|+
T Consensus 38 ~~~~~~l~V~nLp~~~t-----~~~l~~~F~~~G~i~~v~i~~~~~~-----~~g~afV~f~~~~~A~~A~~-~~~~~~~ 106 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYN-----QNKVYKYFKHCGPIIHVDVADSLKK-----NFRFARIEFARYDGALAAIT-KTHKVVG 106 (292)
T ss_dssp ----CEEEEEEECTTCC-----HHHHHHHHGGGSCEEEEEEEECTTS-----SSEEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCCEEEEeCCCCCCC-----HHHHHHHHHhcCCeEEEEEEECCCC-----CcEEEEEEECCHHHHHHHHH-hCCcEeC
Confidence 45789999999753222 5678899999999999999885432 36999999999999999995 9999999
Q ss_pred CeEEEEEeccccccccccc
Q 016857 352 GRVVRATFYDEERFSKNEL 370 (381)
Q Consensus 352 GR~V~a~fy~ee~F~~~~l 370 (381)
|+.|.+.+.......-+.|
T Consensus 107 g~~i~v~~~~~~~l~v~nl 125 (292)
T 2ghp_A 107 QNEIIVSHLTECTLWMTNF 125 (292)
T ss_dssp TEECEEEECCSCEEEEECC
T ss_pred CcEEEEEECCCCEEEEECC
Confidence 9999998876543333333
No 197
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.46 E-value=9.1e-07 Score=75.38 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=64.6
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC--
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG-- 351 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~-- 351 (381)
.++.|++.|+-.. +. ++||++.|++||.|.+|.|..+...+ .....|++||+|.+.++|.+|+..|||..+.
T Consensus 2 ~~~~l~V~nLp~~--~t---e~~l~~~F~~~G~i~~v~i~~~~~~~-~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 75 (175)
T 3nmr_A 2 DAIKMFVGQVPRT--WS---EKDLRELFEQYGAVYEINVLRDRSQN-PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG 75 (175)
T ss_dssp CCEEEEEESCCTT--CC---HHHHHHHHHTTSCEEEEEEEEECSSS-SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CceEEEEeCCCCC--CC---HHHHHHHHHhCCCEEEEEEEecCCCC-CCCcceEEEEEECCHHHHHHHHHHhcCcEEccC
Confidence 3678999997432 22 46788999999999999999865432 0135799999999999999999999998775
Q ss_pred -CeEEEEEeccc
Q 016857 352 -GRVVRATFYDE 362 (381)
Q Consensus 352 -GR~V~a~fy~e 362 (381)
++.+.+.+...
T Consensus 76 ~~~~~~~~~~~~ 87 (175)
T 3nmr_A 76 MHHPIQMKPADS 87 (175)
T ss_dssp CSSCCEEEECGG
T ss_pred CccceEEccccc
Confidence 57777777654
No 198
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=7.9e-07 Score=73.10 Aligned_cols=77 Identities=13% Similarity=0.143 Sum_probs=54.7
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..++.|++.|+-.. + -++||++.|++||.|. +.++.....+......|++||+|.+.++|.+|+..|++ ++|
T Consensus 6 ~~~~~lfVgnLp~~--~---te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G 77 (114)
T 2dnl_A 6 SGSRKVFVGGLPPD--I---DEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDG 77 (114)
T ss_dssp SCCCCEEEECCCTT--C---CHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETT
T ss_pred CCCCEEEEcCCCCC--C---CHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCC
Confidence 46788999997422 2 2567889999999999 77765433211124689999999999999999999932 344
Q ss_pred eEEEE
Q 016857 353 RVVRA 357 (381)
Q Consensus 353 R~V~a 357 (381)
+.+.+
T Consensus 78 ~~~~~ 82 (114)
T 2dnl_A 78 KLYLC 82 (114)
T ss_dssp EEEEE
T ss_pred cEEEe
Confidence 44433
No 199
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.43 E-value=4.4e-07 Score=79.17 Aligned_cols=83 Identities=10% Similarity=0.129 Sum_probs=63.2
Q ss_pred eEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCC----HHH----HHHHHH--hh
Q 016857 276 RVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFER----SEQ----TTKALI--DL 345 (381)
Q Consensus 276 rVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d----~es----A~kAv~--~L 345 (381)
.-|++.|+.+... ..--+++|++.|+.||.|.+|.+..+...+ ...|++||+|.+ .++ |.+|+. .|
T Consensus 3 ~kI~VgnL~~~~~-~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg---~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTT-TNIQDISIKNYFKKYGEISHFEAFNDPNSA---LPLHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCC-CCCCHHHHHHHHHTTSCCSEEEEEECTTTC---CEEEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCC-CCCCHHHHHHHHHhcCCeEEEEEEecCCCC---ceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 4577778733221 111256889999999999999999877654 578999999996 322 899999 89
Q ss_pred CCCeeCCeEEEEEeccc
Q 016857 346 DGRFFGGRVVRATFYDE 362 (381)
Q Consensus 346 nGR~F~GR~V~a~fy~e 362 (381)
||..|+||.|.|.+=+.
T Consensus 79 ng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 79 SGCFIMGFKFEVILNKH 95 (136)
T ss_dssp TCEEETTEEEEEEECCT
T ss_pred cCCeecCcEEEEEECcc
Confidence 99999999999987544
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.43 E-value=9.4e-07 Score=82.26 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=66.9
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhh-CCCee
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDL-DGRFF 350 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~L-nGR~F 350 (381)
..++++|+|.|+-. ++. ++||++.|++||.|.+|.|+.+. .+ ...|++||+|.+.++|.+|+..| +|.++
T Consensus 93 a~~~~~l~v~nl~~--~~t---~~~l~~~F~~~G~i~~v~i~~~~-~g---~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 93 ATHGAALTVKNLSP--VVS---NELLEQAFSQFGPVEKAVVVVDD-RG---RATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp CCCSSEEEEESCCT--TCC---HHHHHHHHGGGSCEEEEEEEEET-TS---CEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred cccCCcccccCCCC--CCC---HHHHHHHHHhcCCeEEEEeeeCC-CC---CcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 34677899999742 222 46888999999999999999873 22 46899999999999999999999 55566
Q ss_pred C---CeEEEEEecccc
Q 016857 351 G---GRVVRATFYDEE 363 (381)
Q Consensus 351 ~---GR~V~a~fy~ee 363 (381)
. ||.|.+.+....
T Consensus 164 ~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 164 LTTTPRPVIVEPMEQF 179 (261)
T ss_dssp SSSSCCBCEEEECCCE
T ss_pred ecCCCceEEEeecccc
Confidence 5 999999998753
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.43 E-value=5.5e-07 Score=83.87 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=64.8
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG 352 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G 352 (381)
..++.|++.|+-. ++ -++||++.|++||.|.+|.|.+ ..|++||+|.+.++|.+|+..|||..++|
T Consensus 20 ~~~~~l~V~nLp~--~~---te~~l~~~F~~~G~i~~v~i~~---------~kg~afV~f~~~~~A~~A~~~l~g~~i~g 85 (261)
T 3sde_A 20 TQRCRLFVGNLPT--DI---TEEDFKRLFERYGEPSEVFINR---------DRGFGFIRLESRTLAEIAKAELDGTILKS 85 (261)
T ss_dssp CGGGEEEEESCCT--TC---CHHHHHHHTGGGCCCSEEEEET---------TTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCC--CC---CHHHHHHHHHhcCCEEEEEEeC---------CCcEEEEEECCHHHHHHHHHHcCCcEECC
Confidence 3577899999742 22 2568889999999999999964 25899999999999999999999999999
Q ss_pred eEEEEEeccc
Q 016857 353 RVVRATFYDE 362 (381)
Q Consensus 353 R~V~a~fy~e 362 (381)
+.|.+.+...
T Consensus 86 ~~l~v~~a~~ 95 (261)
T 3sde_A 86 RPLRIRFATH 95 (261)
T ss_dssp EECEEEECCC
T ss_pred ceeEeeeccc
Confidence 9999998864
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.42 E-value=6.3e-07 Score=81.52 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=59.6
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCe--eEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCe
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTV--TRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRF 349 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V--~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~ 349 (381)
..|+++|.+.|+-. ++. ++||++.|++||.| .+|.|+... + ...|..||+|.+.++|.+|+..|||..
T Consensus 120 ~~p~~~l~v~NLp~--~~t---~~~L~~~F~~~G~v~~~~v~~~~~~--~---~~~g~gfV~f~~~~~A~~Ai~~lng~~ 189 (205)
T 3tyt_A 120 QHPSNVLHFFNAPL--EVT---EENFFEICDELGVKRPTSVKVFSGK--S---ERSSSGLLEWDSKSDALETLGFLNHYQ 189 (205)
T ss_dssp CCCCSEEEEEEECT--TCC---HHHHHHHHHHHTCCCCSEEEECSCC--S---SSSEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcceEEEeCCCC--CCC---HHHHHHHHHhcCCcceEEEEEEcCC--C---CCceEEEEEeCCHHHHHHHHHHhCCCC
Confidence 35789999999743 232 56788999999999 899987643 1 235999999999999999999999999
Q ss_pred eCCe
Q 016857 350 FGGR 353 (381)
Q Consensus 350 F~GR 353 (381)
++|+
T Consensus 190 ~~g~ 193 (205)
T 3tyt_A 190 MKNP 193 (205)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 9997
No 203
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.41 E-value=1.3e-06 Score=69.21 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=56.2
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee--
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF-- 350 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F-- 350 (381)
.++..|++.|+-..- -++||++.|++||.|.+|.|+.. .+|++||+|.+.++|. .|+|..+
T Consensus 9 ~~~~~l~V~~Lp~~~-----te~~L~~~F~~~G~i~~v~i~~~--------srGfaFV~F~~~~~A~----~~~~~~~~~ 71 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDM-----TAEELQQFFCQYGEVVDVFIPKP--------FRAFAFVTFADDKVAQ----SLCGEDLII 71 (89)
T ss_dssp --CCEEEEESCCTTC-----CHHHHHHHHTTTSCEEEEECCSS--------CCSEEEEEESCHHHHH----HHTTCEEEE
T ss_pred CCCCEEEEeCCCCCC-----CHHHHHHHHhccCCEEEEEEeeC--------CCCEEEEEECCHHHHH----HHcCCCccc
Confidence 467788888865322 25688899999999999999852 4699999999999998 3677765
Q ss_pred CCeEEEEEeccc
Q 016857 351 GGRVVRATFYDE 362 (381)
Q Consensus 351 ~GR~V~a~fy~e 362 (381)
+|+.|.+.+...
T Consensus 72 ~g~~v~v~~a~~ 83 (89)
T 3d2w_A 72 KGISVHISNAEP 83 (89)
T ss_dssp TTEEEEEEECC-
T ss_pred CCEEEEEEEcCC
Confidence 499999988753
No 204
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.39 E-value=1.8e-06 Score=75.34 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=59.9
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhcc----C-------CeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHH
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKY----G-------TVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKA 341 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKY----G-------~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kA 341 (381)
..++.|++.|+-..- -++||++.|++| | .|.++.+.. ..|++||+|.+.++|.+|
T Consensus 2 ~~~~~l~V~nLp~~~-----te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~---------~~g~afV~F~~~~~A~~A 67 (198)
T 2yh0_A 2 AMARRLYVGNIPFGI-----TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------DKNFAFLEFRSVDETTQA 67 (198)
T ss_dssp --CCEEEEESCCTTC-----CHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET---------TTTEEEEEESCSHHHHHH
T ss_pred CceeEEEEcCCCCCC-----CHHHHHHHHHHHHhhcccccCCCCceEEeEecC---------CCCEEEEEeCCHHHHHHH
Confidence 368899999975322 145778888888 5 677777753 358999999999999999
Q ss_pred HHhhCCCeeCCeEEEEEeccc
Q 016857 342 LIDLDGRFFGGRVVRATFYDE 362 (381)
Q Consensus 342 v~~LnGR~F~GR~V~a~fy~e 362 (381)
+ .|||..|+|+.|.+.+...
T Consensus 68 l-~l~g~~~~g~~i~v~~~~~ 87 (198)
T 2yh0_A 68 M-AFDGIIFQGQSLKIRRPHD 87 (198)
T ss_dssp G-GGTTEEETTEEEEEECCCC
T ss_pred H-HhcCCEEcCceEEEeCCCC
Confidence 9 8999999999999998754
No 205
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.28 E-value=2.3e-06 Score=72.94 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=59.7
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhcc----C-------CeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHH
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKY----G-------TVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKAL 342 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKY----G-------~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv 342 (381)
+++.|++.|+-.. +. ++||++.|++| | .|.++.+.. ..|++||+|.+.++|.+|+
T Consensus 3 ~~~~l~V~nLp~~--~t---~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~---------~~g~afV~f~~~~~A~~A~ 68 (172)
T 2g4b_A 3 SARRLYVGNIPFG--IT---EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------DKNFAFLEFRSVDETTQAM 68 (172)
T ss_dssp GGGEEEEESCCTT--CC---HHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET---------TTTEEEEEESSHHHHHHHG
T ss_pred cccEEEEcCCCcc--cC---HHHHHHHHHHHhhhcccccCCCCceeeeEecC---------CCCEEEEEeCCHHHHHHHH
Confidence 5788999997432 22 45777888888 7 788888763 2589999999999999999
Q ss_pred HhhCCCeeCCeEEEEEecc
Q 016857 343 IDLDGRFFGGRVVRATFYD 361 (381)
Q Consensus 343 ~~LnGR~F~GR~V~a~fy~ 361 (381)
.|||..++|+.|.+.+..
T Consensus 69 -~~~~~~~~g~~i~v~~~~ 86 (172)
T 2g4b_A 69 -AFDGIIFQGQSLKIRRPH 86 (172)
T ss_dssp -GGTTCEETTEECEEECCS
T ss_pred -HhCCcEecCceeeecCCc
Confidence 999999999999998764
No 206
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=1.1e-06 Score=68.42 Aligned_cols=73 Identities=22% Similarity=0.281 Sum_probs=57.6
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCe--e
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRF--F 350 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~--F 350 (381)
.+++.|++.|+- .++. ++||++.|++||.|.+|.|..+ ..|++||+|.+.++|.+ ++|.. +
T Consensus 3 ~~~~~l~V~nLp--~~~t---e~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~----~~~~~~~~ 65 (88)
T 1wf0_A 3 SGSSGVFVGRCT--GDMT---EDELREFFSQYGDVMDVFIPKP--------FRAFAFVTFADDQIAQS----LCGEDLII 65 (88)
T ss_dssp SCCCEEEEESCC--SSSC---HHHHHHHSTTTSCCCEEECCSS--------CCSCCEEECSCHHHHHH----TTTCEEEE
T ss_pred CCCcEEEEeCCC--CCCC---HHHHHHHHHHcCCeeEEEEecC--------CCCEEEEEECCHHHHHH----HhcCCcee
Confidence 467899999974 2232 4678899999999999999753 46899999999999975 45554 4
Q ss_pred CCeEEEEEeccc
Q 016857 351 GGRVVRATFYDE 362 (381)
Q Consensus 351 ~GR~V~a~fy~e 362 (381)
+|+.|.+.+...
T Consensus 66 ~g~~l~v~~a~~ 77 (88)
T 1wf0_A 66 KGISVHISNAEP 77 (88)
T ss_dssp TTEEEEEECCCC
T ss_pred CCEEEEEEecCC
Confidence 899999998764
No 207
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.18 E-value=8.9e-07 Score=76.12 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=58.5
Q ss_pred CCCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeC
Q 016857 272 GPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFG 351 (381)
Q Consensus 272 g~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~ 351 (381)
...++.|++.|+-.. +. ++||++.|++||.|..+.|.... . ....|++||+|.+.++|.+|+ .|||..|+
T Consensus 10 ~~~~~~l~V~nLp~~--~t---~~~l~~~f~~~g~~~~~~~~~~~-~---~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 79 (175)
T 1fje_B 10 STTPFNLFIGNLNPN--KS---VAELKVAISELFAKNDLAVVDVR-T---GTNRKFGYVDFESAEDLEKAL-ELTGLKVF 79 (175)
T ss_dssp CSSSEEEEEECCCTT--SC---HHHHHHHHHHHHHHHTCCCCEEE-E---ETTTTEEEEEESSHHHHHHHH-HGGGEEET
T ss_pred CCCCcEEEEeCCCCC--CC---HHHHHHHHHHhCCcceEEEEECC-C---CccccEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 347889999997432 22 34566666666665552222211 1 135799999999999999999 59999999
Q ss_pred CeEEEEEeccc
Q 016857 352 GRVVRATFYDE 362 (381)
Q Consensus 352 GR~V~a~fy~e 362 (381)
|+.|.+.+...
T Consensus 80 g~~l~v~~~~~ 90 (175)
T 1fje_B 80 GNEIKLEKPKG 90 (175)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEecCCC
Confidence 99999999864
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=6.7e-05 Score=64.10 Aligned_cols=77 Identities=6% Similarity=0.033 Sum_probs=62.5
Q ss_pred CCceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCC-HHHHHHHHHhh--CCCe
Q 016857 273 PPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFER-SEQTTKALIDL--DGRF 349 (381)
Q Consensus 273 ~pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d-~esA~kAv~~L--nGR~ 349 (381)
.+..||.+.|+-... + -++||++.|++||.|..|.|.+.. -..||+|.+ ..+|.+|+..| +|..
T Consensus 16 ~~G~il~v~~l~~~~-~---sredLke~F~~~G~V~~Vd~~~g~---------~tgfVrf~~~~~~A~~av~~ln~~~~~ 82 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQ-T---CREDLHILFSNHGEIKWIDFVRGA---------KEGIILFKEKAKEALGKAKDANNGNLQ 82 (121)
T ss_dssp CCCCEEEEEESCCSS-C---CHHHHHHHTCSSCCEEEEECCTTC---------SEEEEEESSCHHHHHHHHHHTTTSCBC
T ss_pred cCCeEEEEecCCCCc-C---CHHHHHHHHHhcCCEEEEEEecCC---------CEEEEEECCChHHHHHHHHHhhcCCcE
Confidence 466788888865431 1 277899999999999999986532 259999999 89999999999 4888
Q ss_pred eCCeEEEEEeccc
Q 016857 350 FGGRVVRATFYDE 362 (381)
Q Consensus 350 F~GR~V~a~fy~e 362 (381)
++|..++++....
T Consensus 83 i~g~~~~~evL~G 95 (121)
T 1owx_A 83 LRNKEVTWEVLEG 95 (121)
T ss_dssp TTSSSEEEEECCH
T ss_pred EeCcEEEEEECCC
Confidence 9999999998874
No 209
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.65 E-value=0.00025 Score=59.23 Aligned_cols=89 Identities=19% Similarity=0.226 Sum_probs=71.6
Q ss_pred eEEEEecccCCCCC--hhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCCe
Q 016857 276 RVLLLRNMVGPGEV--DDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGGR 353 (381)
Q Consensus 276 rVVvL~NMv~~~El--~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR 353 (381)
..|++.|+ +.++ .+++++.+++.+..|+.+......+ +-.||-|-|.+.++|.+|...|||..|+|+
T Consensus 6 ntLiitnl--~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk---------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 6 SGLIACVA--NDDVFSESETRAKFESLFRTYDKDTTFQYFK---------SFKRVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CEEEEECC--CGGGGSTTTHHHHHHHHHHTTCSSCEEEEET---------TTTEEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred ceEEEecC--CHHHcCCHHHHHHHHHHHHhhCcCcceeecC---------cceEEEEEeCChHHHHHHHHHhccceecCc
Confidence 35778886 3343 3678899999999999999987764 346899999999999999999999999999
Q ss_pred EEEEEecccccccccccCCCCC
Q 016857 354 VVRATFYDEERFSKNELAPLPG 375 (381)
Q Consensus 354 ~V~a~fy~ee~F~~~~l~p~~~ 375 (381)
.+++.|.....-...-|.|...
T Consensus 75 ~~r~YFgq~~~~~~~~L~pP~p 96 (104)
T 1wey_A 75 EMKLYFAQTLHIGSSHLAPPNP 96 (104)
T ss_dssp ECEEECCCCSSCCSCCSCCCCC
T ss_pred eeEEEecCCCCCcccccCCCCc
Confidence 9999998765545555665543
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.0022 Score=54.32 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=58.8
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhcc-----CCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKY-----GTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR 348 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKY-----G~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR 348 (381)
-.|+|.|.|+-|. +.+. -|+.....| |.+++|++..+. +=++|+|.|...|-+|...|||-
T Consensus 20 ~~rtiaL~~ipDt--vnda---rIr~lve~~~~i~~g~i~KI~L~pDH---------~GAivef~d~~~AgKasLaL~G~ 85 (117)
T 2l9w_A 20 LETLICLFPLSDK--VSPS---LICQFLQEEIHINEKDIRKILLVSDF---------NGAIIIFRDSKFAAKMLMILNGS 85 (117)
T ss_dssp TTSCEEEECCCTT--CCHH---HHHHHHHHHTCCCTTTCSEEEEETTT---------TEEEEECSCHHHHHHHHHHHSSE
T ss_pred CCcEEEEecCCCC--CCHH---HHHHHHhhhhccCccceeEEEEecCC---------CceEEEEccchhhHHHHhhcCCe
Confidence 3678899887643 2222 345555667 999999987543 33999999999999999999999
Q ss_pred eeCCeEEEEEeccc
Q 016857 349 FFGGRVVRATFYDE 362 (381)
Q Consensus 349 ~F~GR~V~a~fy~e 362 (381)
.|+||+|+|.-+.+
T Consensus 86 ef~gr~Lr~gTv~e 99 (117)
T 2l9w_A 86 QFQGKVIRSGTIND 99 (117)
T ss_dssp EETTEEEEEECHHH
T ss_pred eecCeEEEecCHHH
Confidence 99999999987765
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.34 E-value=0.047 Score=46.48 Aligned_cols=60 Identities=20% Similarity=0.336 Sum_probs=48.2
Q ss_pred hHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCeeCC-eEEEEEecc
Q 016857 292 ELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFFGG-RVVRATFYD 361 (381)
Q Consensus 292 ELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F~G-R~V~a~fy~ 361 (381)
+....|..+|++||.|.+.... ...--+.|+|.+..+|.+|+.. ||+.|+| -.|-|.-+.
T Consensus 35 ~~~~~VL~~F~~~G~Iv~~~~~---------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 35 ASASYILLQFAQYGNILKHVMS---------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGHHHHHHHHHTTSCEEEEEEC---------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred HHHHHHHHHHHhhCcEEEeccC---------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 3456788999999999998862 1235799999999999999988 9999986 556666653
No 212
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.49 E-value=0.062 Score=46.54 Aligned_cols=71 Identities=14% Similarity=0.364 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhccCCeeE-EEEeeeC---------CCCCCC-CCceEEEEEeCCHHHHHHHHHhhCCCeeCCeEEEEEec
Q 016857 292 ELEDEVGSECAKYGTVTR-VLIFEIT---------EPNFPV-DEAVRIFVQFERSEQTTKALIDLDGRFFGGRVVRATFY 360 (381)
Q Consensus 292 ELeeDI~EECsKYG~V~~-V~I~~~~---------~~~~~~-~~~GrVFVeF~d~esA~kAv~~LnGR~F~GR~V~a~fy 360 (381)
+...-|-++|++||.|.. +.+.+.. ....|. .+..-|.|+|.+..+|.+|+.. ||+.|+|..|-|.-|
T Consensus 18 ~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 18 TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIPY 96 (132)
T ss_dssp GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEEC
T ss_pred HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEEC
Confidence 455677899999999866 2221100 001111 2456899999999999999986 999999999999999
Q ss_pred ccc
Q 016857 361 DEE 363 (381)
Q Consensus 361 ~ee 363 (381)
+..
T Consensus 97 ~~~ 99 (132)
T 3p3d_A 97 TKD 99 (132)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 213
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=86.35 E-value=0.25 Score=41.50 Aligned_cols=39 Identities=5% Similarity=-0.118 Sum_probs=35.5
Q ss_pred CCceEEEEEeCCHHHHHHHHHhh-CCCeeCCeEEEEEeccc
Q 016857 323 DEAVRIFVQFERSEQTTKALIDL-DGRFFGGRVVRATFYDE 362 (381)
Q Consensus 323 ~~~GrVFVeF~d~esA~kAv~~L-nGR~F~GR~V~a~fy~e 362 (381)
...|+.+|+|.+.++|.+|+..| ||..++| .|.+.+...
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 45799999999999999999999 9999999 999987764
No 214
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=82.77 E-value=1.3 Score=37.21 Aligned_cols=35 Identities=3% Similarity=-0.089 Sum_probs=27.5
Q ss_pred EEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC
Q 016857 309 RVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR 348 (381)
Q Consensus 309 ~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR 348 (381)
++.|..+.. ...|+.||+|.+.++|.+|+..+++.
T Consensus 2 ~~kl~ln~~-----~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK-----TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS-----SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-----cccchhHHHHHHHHhHHHHHHhhccc
Confidence 455555543 46899999999999999999888753
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=78.22 E-value=19 Score=28.79 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=41.8
Q ss_pred EEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 278 LLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 278 VvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
|||+++--. --.+++. +..+-+..+.-.... ............|+||.|.+.+++..-.+.++|..|
T Consensus 4 vVIRrLPP~-LteeeF~----~~l~~~~~~d~~~fv-~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 4 VVIRRLPPT-LTKEQLQ----EHLQPMPEHDYFEFF-SNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp EEEEEECTT-CCHHHHH----HHHCSCCCEEEEEEE-ESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred EEEeCCCCC-CCHHHHH----HHhcCcccceEEEEe-CCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 566665322 1123343 334455565544433 222212235568999999999999999999999988
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=68.60 E-value=2.2 Score=43.78 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=31.4
Q ss_pred HHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHh
Q 016857 294 EDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALID 344 (381)
Q Consensus 294 eeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~ 344 (381)
+.|+.+.|++||.|.+++.++.. ..++.|+|.+.+++..++..
T Consensus 66 ~~~l~~y~~~~g~i~~~~~~~~~--------g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 66 ENKFLKYLSQFGPINNHFFYESF--------GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp -CHHHHHHGGGSCCCCEEEECSS--------SEEEEEECC---CCHHHHSS
T ss_pred HHHHHHHHHhcCCcceEEEEccC--------CeEEEEEeCCHHHHHHHHhc
Confidence 34677999999999999998632 37899999999988866543
No 217
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=44.37 E-value=29 Score=28.52 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=40.3
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD 346 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln 346 (381)
...|++| . | |.++. ..||.+.|+.||.|.=-+|.. .-+||.|.+.+.|..|++.++
T Consensus 15 r~HVf~l-~-F-P~ewK---t~DI~~lFs~fggv~I~WidD-----------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-T-F-PKEWK---TSDLYQLFSAFGNIQISWIDD-----------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-E-C-CTTCC---HHHHHHHHTTTCSCCCEEEET-----------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-e-C-Chhhh---hHHHHHHhhccCCEEEEEEcC-----------CeEEEEecCHHHHHHHHHhcc
Confidence 4667777 3 2 33333 357778999998765555541 349999999999999999874
No 218
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=40.15 E-value=69 Score=25.13 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=27.7
Q ss_pred eeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCC
Q 016857 307 VTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDG 347 (381)
Q Consensus 307 V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnG 347 (381)
|.+|.++. .-.|.|||++...++.+.+++.+.|
T Consensus 40 i~~v~vP~--------~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE--------SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT--------TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec--------ccCCEEEEEEecchhHHHHHHCCCC
Confidence 77888764 2459999999999999999998876
No 219
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=32.96 E-value=29 Score=28.59 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=37.8
Q ss_pred ceEEEEecccCCCCChhhHHHHHHHHHhccCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhC
Q 016857 275 TRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLD 346 (381)
Q Consensus 275 SrVVvL~NMv~~~El~dELeeDI~EECsKYG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~Ln 346 (381)
..|++| + | |.++. ..||...|+.||.|.=-+|. + .-+||.|.+.+.|..|++.++
T Consensus 6 ~HV~~l-~-F-P~ewK---t~Di~~lFs~fggv~I~Wid---D--------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-T-F-PKEWK---TSDLYQLFSAFGNIQISWID---D--------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-E-C-CTTCC---HHHHHHHTTTSEEEEEEEEE---T--------TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-e-C-Chhhh---hHHHHHHHhccCCEEEEEEc---C--------CeEEEEecCHHHHHHHHHhcc
Confidence 346666 2 2 33332 35778899999955444443 2 359999999999999999875
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=27.69 E-value=36 Score=27.68 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=25.5
Q ss_pred CCceEEEEEeCCHHHHHHHHHhhCCCee
Q 016857 323 DEAVRIFVQFERSEQTTKALIDLDGRFF 350 (381)
Q Consensus 323 ~~~GrVFVeF~d~esA~kAv~~LnGR~F 350 (381)
..-.|+||.|.+.++...-.+.++|..|
T Consensus 51 ~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 51 HLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp SCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred CcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 3457999999999999999999999988
No 221
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.43 E-value=2.7e+02 Score=22.83 Aligned_cols=72 Identities=14% Similarity=0.083 Sum_probs=47.0
Q ss_pred CceEEEEecccCCCCChhhHHHHHHHHHhc-----cCCeeEEEEeeeCCCCCCCCCceEEEEEeCCHHHHHHHHHhhCCC
Q 016857 274 PTRVLLLRNMVGPGEVDDELEDEVGSECAK-----YGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEQTTKALIDLDGR 348 (381)
Q Consensus 274 pSrVVvL~NMv~~~El~dELeeDI~EECsK-----YG~V~~V~I~~~~~~~~~~~~~GrVFVeF~d~esA~kAv~~LnGR 348 (381)
.-++|.+.|+- .++.+|+ |.-.|++ =|.|.+|.... .-++|.|.+.+.|.+.+..= -.
T Consensus 7 ~~~~I~V~~lP--p~~~~e~---L~LYFEn~rrsGGG~V~~v~~~~-----------~~AvItF~d~~va~rVL~k~-~H 69 (104)
T 2dhx_A 7 GGVAVEVRGLP--PAVPDEL---LTLYFENRRRSGGGPVLSWQRLG-----------CGGVLTFREPADAERVLAQA-DH 69 (104)
T ss_dssp CCCEEEEESCC--TTSCHHH---HHHHHHCTTTTCCCCEEEEEEET-----------TEEEEEESSHHHHHHHHTCS-CC
T ss_pred CccEEEEECCC--CCCChhH---heEEEeCCCcCCCceeeEEEEcC-----------CcEEEEEcChHHHHHHhcCC-cc
Confidence 45688888954 3555553 3344543 36799998753 34899999999998877762 23
Q ss_pred eeCCeEEEEEeccc
Q 016857 349 FFGGRVVRATFYDE 362 (381)
Q Consensus 349 ~F~GR~V~a~fy~e 362 (381)
.|+|..|.+.=|.+
T Consensus 70 ~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 70 ELHGAQLSLRPAPP 83 (104)
T ss_dssp BSSSSBCEEEECCC
T ss_pred eecCeEEEEEcCCC
Confidence 45666666655543
Done!