Query 016859
Match_columns 381
No_of_seqs 264 out of 1130
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:27:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0825 PHD Zn-finger protein 99.5 1.7E-14 3.6E-19 153.8 2.2 107 148-256 122-266 (1134)
2 KOG1244 Predicted transcriptio 99.4 8.9E-14 1.9E-18 134.4 1.6 71 184-256 258-331 (336)
3 PF00628 PHD: PHD-finger; Int 98.9 4E-10 8.6E-15 82.4 0.3 48 208-255 1-50 (51)
4 KOG1512 PHD Zn-finger protein 98.8 1.1E-09 2.4E-14 107.0 1.9 57 196-256 306-363 (381)
5 KOG4299 PHD Zn-finger protein 98.7 6.9E-09 1.5E-13 109.7 1.5 52 206-257 253-306 (613)
6 smart00249 PHD PHD zinc finger 98.6 4.9E-08 1.1E-12 68.1 3.2 46 208-253 1-47 (47)
7 KOG4443 Putative transcription 98.5 2.7E-08 6E-13 105.7 2.0 60 196-257 60-119 (694)
8 cd04718 BAH_plant_2 BAH, or Br 98.5 1.2E-07 2.5E-12 85.4 3.6 30 230-259 1-30 (148)
9 KOG0383 Predicted helicase [Ge 98.3 3.6E-07 7.8E-12 99.0 2.1 93 205-309 46-138 (696)
10 KOG0957 PHD finger protein [Ge 98.2 1E-06 2.2E-11 91.7 3.1 52 205-256 543-598 (707)
11 KOG1245 Chromatin remodeling c 98.1 5.5E-07 1.2E-11 103.9 -1.1 53 206-258 1108-1160(1404)
12 KOG0955 PHD finger protein BR1 98.0 2.9E-06 6.3E-11 95.4 3.5 72 204-277 217-297 (1051)
13 KOG1973 Chromatin remodeling p 97.8 5.3E-06 1.2E-10 81.0 1.2 36 220-257 231-269 (274)
14 COG5141 PHD zinc finger-contai 97.7 2.1E-05 4.5E-10 82.1 2.1 71 205-277 192-271 (669)
15 KOG4323 Polycomb-like PHD Zn-f 97.3 0.00011 2.3E-09 76.8 1.6 65 196-260 158-228 (464)
16 COG5034 TNG2 Chromatin remodel 97.0 0.00026 5.6E-09 68.9 1.5 35 220-256 233-270 (271)
17 KOG0956 PHD finger protein AF1 97.0 0.00033 7.1E-09 75.7 1.7 70 208-279 7-88 (900)
18 KOG0954 PHD finger protein [Ge 96.6 0.00069 1.5E-08 73.8 1.0 49 206-256 271-321 (893)
19 PF13831 PHD_2: PHD-finger; PD 96.5 0.00033 7.1E-09 49.1 -1.3 34 219-254 2-36 (36)
20 KOG1246 DNA-binding protein ju 95.3 0.013 2.8E-07 65.9 3.4 51 205-256 154-204 (904)
21 KOG1473 Nucleosome remodeling 95.0 0.013 2.9E-07 66.6 2.4 49 206-257 344-392 (1414)
22 PF01448 ELM2: ELM2 domain; I 92.4 0.061 1.3E-06 40.2 1.1 21 300-320 1-21 (55)
23 KOG4299 PHD Zn-finger protein 87.7 0.64 1.4E-05 50.6 4.4 48 206-256 47-95 (613)
24 PF15446 zf-PHD-like: PHD/FYVE 84.0 0.48 1E-05 44.1 1.1 48 208-255 1-59 (175)
25 KOG4443 Putative transcription 83.2 0.35 7.6E-06 52.8 -0.1 54 207-260 19-75 (694)
26 KOG0383 Predicted helicase [Ge 78.1 0.4 8.6E-06 53.1 -1.8 55 199-256 499-554 (696)
27 PF12861 zf-Apc11: Anaphase-pr 76.5 0.87 1.9E-05 37.9 0.2 48 207-256 33-80 (85)
28 PHA02929 N1R/p28-like protein; 76.1 1.9 4E-05 42.1 2.3 45 148-194 173-227 (238)
29 KOG0957 PHD finger protein [Ge 73.5 2.5 5.5E-05 45.4 2.7 70 207-276 120-205 (707)
30 PF11793 FANCL_C: FANCL C-term 70.8 0.4 8.7E-06 37.9 -3.0 50 207-256 3-64 (70)
31 PF13901 DUF4206: Domain of un 69.5 3.5 7.5E-05 38.8 2.4 41 207-256 153-198 (202)
32 PF14446 Prok-RING_1: Prokaryo 68.7 2.8 6E-05 32.3 1.3 32 207-238 6-38 (54)
33 PF07649 C1_3: C1-like domain; 66.8 2.1 4.6E-05 28.3 0.3 28 208-235 2-29 (30)
34 PHA02926 zinc finger-like prot 59.8 5.9 0.00013 38.7 2.0 33 148-180 169-212 (242)
35 KOG1512 PHD Zn-finger protein 57.0 4.2 9E-05 41.1 0.5 50 207-256 259-317 (381)
36 PF13832 zf-HC5HC2H_2: PHD-zin 56.3 5.8 0.00013 33.1 1.2 30 206-237 55-86 (110)
37 PF15446 zf-PHD-like: PHD/FYVE 54.9 9.7 0.00021 35.7 2.5 23 217-239 119-142 (175)
38 cd04709 BAH_MTA BAH, or Bromo 51.5 8.2 0.00018 35.6 1.4 20 300-319 143-162 (164)
39 PF13639 zf-RING_2: Ring finge 51.4 0.79 1.7E-05 32.3 -4.1 42 208-254 2-44 (44)
40 KOG1473 Nucleosome remodeling 46.2 3.4 7.3E-05 48.1 -2.3 50 206-258 428-481 (1414)
41 KOG1632 Uncharacterized PHD Zn 44.6 12 0.00027 38.2 1.6 39 220-258 74-115 (345)
42 cd00162 RING RING-finger (Real 44.4 6.1 0.00013 26.3 -0.4 42 209-255 2-43 (45)
43 PF13771 zf-HC5HC2H: PHD-like 40.4 14 0.00029 29.6 1.0 28 207-237 37-67 (90)
44 KOG1081 Transcription factor N 40.1 23 0.00049 37.7 2.8 47 205-257 88-134 (463)
45 PF10497 zf-4CXXC_R1: Zinc-fin 38.4 11 0.00023 32.4 0.0 48 207-255 8-69 (105)
46 cd00730 rubredoxin Rubredoxin; 34.4 24 0.00052 26.5 1.4 16 242-258 30-45 (50)
47 KOG3612 PHD Zn-finger protein 31.6 38 0.00083 36.9 2.9 49 205-257 59-109 (588)
48 PF12678 zf-rbx1: RING-H2 zinc 29.9 11 0.00024 29.9 -1.2 31 220-254 43-73 (73)
49 PF00130 C1_1: Phorbol esters/ 27.2 40 0.00086 24.3 1.5 31 207-237 12-44 (53)
50 KOG0320 Predicted E3 ubiquitin 27.2 34 0.00073 32.5 1.4 39 150-190 132-174 (187)
51 PF10367 Vps39_2: Vacuolar sor 27.0 39 0.00084 27.3 1.6 32 205-237 77-108 (109)
52 KOG4628 Predicted E3 ubiquitin 24.7 62 0.0013 33.5 2.8 48 207-257 230-277 (348)
53 PHA02929 N1R/p28-like protein; 23.9 29 0.00063 34.0 0.3 52 206-261 174-230 (238)
54 KOG1244 Predicted transcriptio 23.7 21 0.00044 36.1 -0.7 52 206-257 224-285 (336)
55 PRK14559 putative protein seri 23.5 74 0.0016 35.4 3.3 51 208-260 3-54 (645)
56 PF03107 C1_2: C1 domain; Int 23.1 64 0.0014 21.3 1.8 28 208-235 2-29 (30)
57 PF07227 DUF1423: Protein of u 22.8 54 0.0012 35.0 2.1 52 206-257 128-193 (446)
58 cd00350 rubredoxin_like Rubred 22.0 56 0.0012 22.1 1.3 13 246-258 16-28 (33)
59 PLN03208 E3 ubiquitin-protein 21.7 62 0.0013 30.9 2.0 29 150-178 19-49 (193)
60 KOG3554 Histone deacetylase co 21.1 30 0.00064 37.3 -0.2 22 299-320 166-187 (693)
61 COG5141 PHD zinc finger-contai 20.2 55 0.0012 35.6 1.5 31 207-239 304-336 (669)
62 PF00301 Rubredoxin: Rubredoxi 20.1 49 0.0011 24.6 0.8 16 242-258 30-45 (47)
No 1
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.46 E-value=1.7e-14 Score=153.81 Aligned_cols=107 Identities=25% Similarity=0.470 Sum_probs=85.4
Q ss_pred CCCCCCCccccccCCC-----CCccchhhhhhhccccccccccccccccccccccC--------C---------------
Q 016859 148 DISNSDISRLEVLDED-----PSAREFCVSVLRSNGLLGAVGECSVRSVASGEVSG--------T--------------- 199 (381)
Q Consensus 148 d~~eCp~~~~~~~~ee-----~s~~~~Cl~~l~~~~l~~~~~~Cp~~~~t~~~~~~--------~--------------- 199 (381)
+...||+|+..++.++ .++|.||.+|+.+|.... .+||+++..|.+... |
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a--qTCPiDR~EF~~v~V~eS~~~~~~vR~lP~EEs~~~~e~ 199 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA--QTCPVDRGEFGEVKVLESTGIEANVRCLPSEESENILEK 199 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc--ccCchhhhhhheeeeeccccccceeEecchhhhhhhhhh
Confidence 3368999998864333 478899999999988555 999999988753110 1
Q ss_pred ---------ccccccccccccccccCCCCCeEEeccCCCC-CCCcccCCCCCCCCCCCccCccccCC
Q 016859 200 ---------GHEISVIQSCKLCGKADNTSTMLLCDYCDEA-FHPSCCNPRIKILPTDNWLCQCCSNL 256 (381)
Q Consensus 200 ---------~~~~~~~~~C~vC~~~~~~~~LLlCD~Cd~a-yH~~CL~PPL~~iP~G~W~Cp~C~~~ 256 (381)
.........|.+|...+.++.||+||.|+.+ ||+|||+|+|.++|.++|||+.|.-.
T Consensus 200 ~~d~~~d~~~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 200 GGDEKQDQISGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred ccccccccccCcccccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 0011123569999999999999999999999 99999999999999999999999644
No 2
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.38 E-value=8.9e-14 Score=134.41 Aligned_cols=71 Identities=24% Similarity=0.593 Sum_probs=61.5
Q ss_pred cccccccccc---ccccCCccccccccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCC
Q 016859 184 GECSVRSVAS---GEVSGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (381)
Q Consensus 184 ~~Cp~~~~t~---~~~~~~~~~~~~~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~ 256 (381)
..|+.....| -...+|+|-+| .+|.+||..++++.|||||.||++||||||.|||.+-|+|.|.|..|...
T Consensus 258 psclqft~nm~~avk~yrwqciec--k~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 258 PSCLQFTANMIAAVKTYRWQCIEC--KYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred cchhhhhHHHHHHHHhheeeeeec--ceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 5565433333 25678999999 89999999999999999999999999999999999999999999999754
No 3
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.87 E-value=4e-10 Score=82.41 Aligned_cols=48 Identities=33% Similarity=1.005 Sum_probs=43.3
Q ss_pred ccccccccCCCCCeEEeccCCCCCCCcccCCCCC--CCCCCCccCccccC
Q 016859 208 SCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIK--ILPTDNWLCQCCSN 255 (381)
Q Consensus 208 ~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~--~iP~G~W~Cp~C~~ 255 (381)
+|.+|++.++.+.||.||.|++.||+.|+.|++. .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899999888899999999999999999999988 55667999999974
No 4
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.83 E-value=1.1e-09 Score=106.99 Aligned_cols=57 Identities=26% Similarity=0.613 Sum_probs=51.9
Q ss_pred ccCCccccccccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCc-cccCC
Q 016859 196 VSGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQ-CCSNL 256 (381)
Q Consensus 196 ~~~~~~~~~~~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp-~C~~~ 256 (381)
..-|.|-+| ..|.+|+++..+++++|||.||++||++|+. |..+|.|.|.|. .|...
T Consensus 306 TY~W~C~~C--~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 306 TYFWKCSSC--ELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREA 363 (381)
T ss_pred hcchhhccc--HhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHh
Confidence 456999999 8899999999999999999999999999999 999999999998 56544
No 5
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.66 E-value=6.9e-09 Score=109.71 Aligned_cols=52 Identities=25% Similarity=0.725 Sum_probs=46.6
Q ss_pred ccccccccccCCCCCeEEeccCCCCCCCcccCCC--CCCCCCCCccCccccCCC
Q 016859 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPR--IKILPTDNWLCQCCSNLN 257 (381)
Q Consensus 206 ~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PP--L~~iP~G~W~Cp~C~~~~ 257 (381)
.++|..|++.+.-..+++||+|+++||++||.|| ...||.|.|||+.|....
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 4699999999976677999999999999999999 568999999999998663
No 6
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.54 E-value=2.7e-08 Score=105.70 Aligned_cols=60 Identities=28% Similarity=0.753 Sum_probs=55.8
Q ss_pred ccCCccccccccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCC
Q 016859 196 VSGTGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (381)
Q Consensus 196 ~~~~~~~~~~~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~~ 257 (381)
..+|.|+.| .+|+.|+.++++.++++|+.||.+||.||..|++..||.|.|+|+.|..+.
T Consensus 60 ~~gWrC~~c--rvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~ 119 (694)
T KOG4443|consen 60 SGGWRCPSC--RVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCR 119 (694)
T ss_pred cCCcccCCc--eeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhh
Confidence 345999999 999999999999999999999999999999999999999999999887664
No 8
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.46 E-value=1.2e-07 Score=85.36 Aligned_cols=30 Identities=33% Similarity=0.897 Sum_probs=27.4
Q ss_pred CCCCcccCCCCCCCCCCCccCccccCCCCc
Q 016859 230 AFHPSCCNPRIKILPTDNWLCQCCSNLNSN 259 (381)
Q Consensus 230 ayH~~CL~PPL~~iP~G~W~Cp~C~~~~~~ 259 (381)
+||++||.|||+.+|+|+|+||.|......
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence 699999999999999999999999977543
No 9
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.25 E-value=3.6e-07 Score=98.95 Aligned_cols=93 Identities=18% Similarity=0.441 Sum_probs=67.5
Q ss_pred cccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCCcccccCccccCCCCccCCCCCCCCcc
Q 016859 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNVSQENSFLKSPNNSWMYGKPRSEMG 284 (381)
Q Consensus 205 ~~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~~~~v~~e~~~~~~~~i~W~~g~~~~~~g 284 (381)
....|.+|+.++ .+|+||.|..+||.+|++||+..+|.++|.|+.|..+.+... + ..++.|.|......
T Consensus 46 ~~e~c~ic~~~g---~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~~~k----~--~~il~~~~~~~~~~-- 114 (696)
T KOG0383|consen 46 EQEACRICADGG---ELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKNAGK----I--EKILGWRWKPTPKP-- 114 (696)
T ss_pred hhhhhhhhcCCC---cEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCCccc----c--cccceeEecCCCCc--
Confidence 347899999998 699999999999999999999999999999999966654211 1 13456666443221
Q ss_pred chhhhccCCCCCccccccCCceeEe
Q 016859 285 RIALMLKYPEPYTSRVRIGESYQAE 309 (381)
Q Consensus 285 pi~~m~~d~~pyts~vRiGr~Fqa~ 309 (381)
....-.-.+++...++..++|+++
T Consensus 115 -~~~~~~~~~~~~~~~~~~re~~vk 138 (696)
T KOG0383|consen 115 -REGNQGVISPRRSNGIVEREFFVK 138 (696)
T ss_pred -cccCcCccCCcccccchhhhcccc
Confidence 001111245677788899999887
No 10
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=98.16 E-value=1e-06 Score=91.72 Aligned_cols=52 Identities=29% Similarity=0.778 Sum_probs=47.2
Q ss_pred cccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCC----CccCccccCC
Q 016859 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTD----NWLCQCCSNL 256 (381)
Q Consensus 205 ~~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G----~W~Cp~C~~~ 256 (381)
....|.+|++..+...++.||.|...||+.||+|||+.+|+- .|.|..|...
T Consensus 543 ~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~ 598 (707)
T KOG0957|consen 543 MNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKN 598 (707)
T ss_pred cceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccccc
Confidence 457899999999999999999999999999999999999986 4999999433
No 11
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.07 E-value=5.5e-07 Score=103.92 Aligned_cols=53 Identities=32% Similarity=0.858 Sum_probs=49.9
Q ss_pred ccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCC
Q 016859 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNS 258 (381)
Q Consensus 206 ~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~~~ 258 (381)
...|.+|...+..+.|++||.|..+||++|+.|.|..+|.|+|+|+.|+....
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 46799999999999999999999999999999999999999999999998763
No 12
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.03 E-value=2.9e-06 Score=95.35 Aligned_cols=72 Identities=24% Similarity=0.631 Sum_probs=60.3
Q ss_pred ccccccccccccCCC--CCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCCcc-------cccCccccCCCCcc
Q 016859 204 SVIQSCKLCGKADNT--STMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNV-------SQENSFLKSPNNSW 274 (381)
Q Consensus 204 ~~~~~C~vC~~~~~~--~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~~~~v-------~~e~~~~~~~~i~W 274 (381)
..+.+|.+|.+++-. +.+|+||.|+.++|++|.. +.-+|+|.|+|..|....... .+.+.|++...-+|
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw 294 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRW 294 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCce
Confidence 356899999998744 8999999999999999999 677999999999998765433 56778888888888
Q ss_pred CCC
Q 016859 275 MYG 277 (381)
Q Consensus 275 ~~g 277 (381)
.+-
T Consensus 295 ~Hv 297 (1051)
T KOG0955|consen 295 AHV 297 (1051)
T ss_pred eee
Confidence 753
No 13
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.84 E-value=5.3e-06 Score=81.04 Aligned_cols=36 Identities=39% Similarity=0.911 Sum_probs=33.7
Q ss_pred CeEEecc--CC-CCCCCcccCCCCCCCCCCCccCccccCCC
Q 016859 220 TMLLCDY--CD-EAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (381)
Q Consensus 220 ~LLlCD~--Cd-~ayH~~CL~PPL~~iP~G~W~Cp~C~~~~ 257 (381)
.|+-||. |+ .+||+.|.. |+..|+|.|||+.|....
T Consensus 231 ~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 231 KMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred cccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence 7999998 99 999999999 999999999999998764
No 14
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.65 E-value=2.1e-05 Score=82.12 Aligned_cols=71 Identities=27% Similarity=0.685 Sum_probs=60.3
Q ss_pred cccccccccccC--CCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCCcc-------cccCccccCCCCccC
Q 016859 205 VIQSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNV-------SQENSFLKSPNNSWM 275 (381)
Q Consensus 205 ~~~~C~vC~~~~--~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~~~~v-------~~e~~~~~~~~i~W~ 275 (381)
.++.|.+|...+ +.+.+++||+|+.+-|..|.. +..+|+|.|+|..|.-....+ .+++.|++....+|.
T Consensus 192 ~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~ 269 (669)
T COG5141 192 FDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWG 269 (669)
T ss_pred hhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchH
Confidence 357899998766 456899999999999999999 789999999999998776554 578899999888887
Q ss_pred CC
Q 016859 276 YG 277 (381)
Q Consensus 276 ~g 277 (381)
+.
T Consensus 270 H~ 271 (669)
T COG5141 270 HV 271 (669)
T ss_pred hH
Confidence 53
No 15
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.26 E-value=0.00011 Score=76.77 Aligned_cols=65 Identities=28% Similarity=0.567 Sum_probs=48.2
Q ss_pred ccCCccccccccccccccccC--CCCCeEEeccCCCCCCCcccCCCCCCC----CCCCccCccccCCCCcc
Q 016859 196 VSGTGHEISVIQSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCNPRIKIL----PTDNWLCQCCSNLNSNV 260 (381)
Q Consensus 196 ~~~~~~~~~~~~~C~vC~~~~--~~~~LLlCD~Cd~ayH~~CL~PPL~~i----P~G~W~Cp~C~~~~~~v 260 (381)
..+|.-.-.....|-+|+.++ ..++||.|+.|...||..|..|+++.+ |.++|||..|......+
T Consensus 158 ~l~wD~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 158 SLDWDSGHKVNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKV 228 (464)
T ss_pred ccccCccccccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhc
Confidence 445544333334588887654 455999999999999999999998754 66689999998775443
No 16
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.02 E-value=0.00026 Score=68.90 Aligned_cols=35 Identities=37% Similarity=0.931 Sum_probs=31.3
Q ss_pred CeEEecc--CC-CCCCCcccCCCCCCCCCCCccCccccCC
Q 016859 220 TMLLCDY--CD-EAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (381)
Q Consensus 220 ~LLlCD~--Cd-~ayH~~CL~PPL~~iP~G~W~Cp~C~~~ 256 (381)
.|+-||. |. .+||+.|.+ |.+.|+|.|||+.|...
T Consensus 233 qMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 233 QMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKKA 270 (271)
T ss_pred cceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHhc
Confidence 6999995 87 579999999 99999999999999753
No 17
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.96 E-value=0.00033 Score=75.75 Aligned_cols=70 Identities=24% Similarity=0.609 Sum_probs=54.8
Q ss_pred cccccccc--CCCCCeEEecc--CCCCCCCcccCCCCCCCCCCCccCccccCCC--------CcccccCccccCCCCccC
Q 016859 208 SCKLCGKA--DNTSTMLLCDY--CDEAFHPSCCNPRIKILPTDNWLCQCCSNLN--------SNVSQENSFLKSPNNSWM 275 (381)
Q Consensus 208 ~C~vC~~~--~~~~~LLlCD~--Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~~--------~~v~~e~~~~~~~~i~W~ 275 (381)
-|-||.+- =.++.|+.||+ |.-+.|.-|+. |.+||.|.|||..|.... -.-.+++..++..+--|.
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWA 84 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWA 84 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCce
Confidence 37778652 24568999995 99999999999 899999999999997653 223567888888888888
Q ss_pred CCCC
Q 016859 276 YGKP 279 (381)
Q Consensus 276 ~g~~ 279 (381)
+-.+
T Consensus 85 HVVC 88 (900)
T KOG0956|consen 85 HVVC 88 (900)
T ss_pred EEEE
Confidence 6543
No 18
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.61 E-value=0.00069 Score=73.80 Aligned_cols=49 Identities=31% Similarity=0.818 Sum_probs=43.4
Q ss_pred ccccccccccC--CCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCC
Q 016859 206 IQSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (381)
Q Consensus 206 ~~~C~vC~~~~--~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~ 256 (381)
+..|.+|..++ ..+.|++||.|..-.|+-|.. |.++|.|.|.|..|.-.
T Consensus 271 dviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg 321 (893)
T KOG0954|consen 271 DVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALG 321 (893)
T ss_pred cceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcccc
Confidence 46799998874 456999999999999999999 99999999999999744
No 19
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.54 E-value=0.00033 Score=49.06 Aligned_cols=34 Identities=38% Similarity=1.083 Sum_probs=20.8
Q ss_pred CCeEEeccCCCCCCCcccCCCCCCCCCC-CccCcccc
Q 016859 219 STMLLCDYCDEAFHPSCCNPRIKILPTD-NWLCQCCS 254 (381)
Q Consensus 219 ~~LLlCD~Cd~ayH~~CL~PPL~~iP~G-~W~Cp~C~ 254 (381)
+.||.|+.|.-..|..|.. +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 4799999999999999999 7888888 89999884
No 20
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=95.28 E-value=0.013 Score=65.93 Aligned_cols=51 Identities=31% Similarity=0.888 Sum_probs=46.4
Q ss_pred cccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCC
Q 016859 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (381)
Q Consensus 205 ~~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~ 256 (381)
+...|..|.++..+ .+++|+.|.+.||.+|+.|+++.++.|+|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEE-KLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCc-cceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 45679999999887 5559999999999999999999999999999999877
No 21
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=94.99 E-value=0.013 Score=66.57 Aligned_cols=49 Identities=22% Similarity=0.653 Sum_probs=44.8
Q ss_pred ccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCC
Q 016859 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (381)
Q Consensus 206 ~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~~ 257 (381)
++.|.+|.+.+ .+|||..|++.||+.|..||+.++|+..|-|-.|...+
T Consensus 344 ddhcrf~~d~~---~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hk 392 (1414)
T KOG1473|consen 344 DDHCRFCHDLG---DLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHK 392 (1414)
T ss_pred cccccccCccc---ceeecccCCceEEeeecCCccccCCCccchhhhhhhhc
Confidence 46899999988 49999999999999999999999999999999998553
No 22
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=92.38 E-value=0.061 Score=40.24 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=18.5
Q ss_pred cccCCceeEeCCCCcccccCC
Q 016859 300 VRIGESYQAEVPDWSDQISSN 320 (381)
Q Consensus 300 vRiGr~Fqa~VP~Ws~~~~~~ 320 (381)
+|||..|||+||++......+
T Consensus 1 IrVG~~yQA~IP~~~~~~~~~ 21 (55)
T PF01448_consen 1 IRVGPEYQAEIPELLPDSERD 21 (55)
T ss_pred CCcCCccCCcCCCCccccccc
Confidence 499999999999999887664
No 23
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=87.73 E-value=0.64 Score=50.56 Aligned_cols=48 Identities=31% Similarity=0.725 Sum_probs=40.5
Q ss_pred ccccccccccCCCCCeEEeccCCCCCCCcccCCCCCC-CCCCCccCccccCC
Q 016859 206 IQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKI-LPTDNWLCQCCSNL 256 (381)
Q Consensus 206 ~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~-iP~G~W~Cp~C~~~ 256 (381)
.+.|.+|..+++ +++|+.|+.+||..|..+++.. .+.+.|.|..|...
T Consensus 47 ~ts~~~~~~~gn---~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 47 ATSCGICKSGGN---LLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred hhhcchhhhcCC---ccccccCccccchhccCcccCcccccccccccCCCcc
Confidence 367999999995 8999999999999999999873 34457999999764
No 24
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=83.99 E-value=0.48 Score=44.12 Aligned_cols=48 Identities=27% Similarity=0.823 Sum_probs=34.0
Q ss_pred cccccc---ccCCCCCeEEeccCCCCCCCcccCCCCC------CCCCCC--ccCccccC
Q 016859 208 SCKLCG---KADNTSTMLLCDYCDEAFHPSCCNPRIK------ILPTDN--WLCQCCSN 255 (381)
Q Consensus 208 ~C~vC~---~~~~~~~LLlCD~Cd~ayH~~CL~PPL~------~iP~G~--W~Cp~C~~ 255 (381)
+|.+|+ ...+-..|++|-+|-.+||..||.|.-. .|-.++ -.|..|+-
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig 59 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIG 59 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcC
Confidence 377784 3335568999999999999999998753 233333 45666753
No 25
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=83.23 E-value=0.35 Score=52.85 Aligned_cols=54 Identities=24% Similarity=0.695 Sum_probs=40.8
Q ss_pred cccccccccC--CCCCeEEeccCCCCCCCcccCCCCCCC-CCCCccCccccCCCCcc
Q 016859 207 QSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCNPRIKIL-PTDNWLCQCCSNLNSNV 260 (381)
Q Consensus 207 ~~C~vC~~~~--~~~~LLlCD~Cd~ayH~~CL~PPL~~i-P~G~W~Cp~C~~~~~~v 260 (381)
..|.+|+..| .+..||.|..|..-||.+|+.--+... =.+-|.|+.|+.+....
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~ 75 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACG 75 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeecc
Confidence 5688887654 456799999999999999998544433 23449999999886554
No 26
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=78.11 E-value=0.4 Score=53.06 Aligned_cols=55 Identities=18% Similarity=0.034 Sum_probs=49.0
Q ss_pred CccccccccccccccccCCCCCeEEeccCCCCCCCcccCC-CCCCCCCCCccCccccCC
Q 016859 199 TGHEISVIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNP-RIKILPTDNWLCQCCSNL 256 (381)
Q Consensus 199 ~~~~~~~~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~P-PL~~iP~G~W~Cp~C~~~ 256 (381)
|..+...+..|..|.+.. ..|+|+.|-+.||..|+.| |++..+.|.|-|+.|..+
T Consensus 499 ~f~e~~~d~~~~~~~~~l---~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~ 554 (696)
T KOG0383|consen 499 WFLEEFHDISCEEQIKKL---HLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKK 554 (696)
T ss_pred hhhhhcchhhHHHHHHhh---ccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHH
Confidence 555566778999999887 5889999999999999999 999999999999999766
No 27
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=76.53 E-value=0.87 Score=37.94 Aligned_cols=48 Identities=17% Similarity=0.445 Sum_probs=35.9
Q ss_pred cccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCC
Q 016859 207 QSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (381)
Q Consensus 207 ~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~ 256 (381)
..|..|.-++++-.++++. |...||+.|+.--|.+- ...=.||-|+..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~-C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGK-CSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred cCCCCccCCCCCCceeecc-CccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 3467788888776777665 99999999998776653 233489999865
No 28
>PHA02929 N1R/p28-like protein; Provisional
Probab=76.11 E-value=1.9 Score=42.08 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=33.1
Q ss_pred CCCCCCCccccccCCC----------CCccchhhhhhhccccccccccccccccccc
Q 016859 148 DISNSDISRLEVLDED----------PSAREFCVSVLRSNGLLGAVGECSVRSVASG 194 (381)
Q Consensus 148 d~~eCp~~~~~~~~ee----------~s~~~~Cl~~l~~~~l~~~~~~Cp~~~~t~~ 194 (381)
+..+||+|.-.+...+ .+.|.||..||..|-. ...+||+.+....
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~--~~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK--EKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh--cCCCCCCCCCEee
Confidence 4579999998754322 4889999999998753 3478888876544
No 29
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=73.50 E-value=2.5 Score=45.40 Aligned_cols=70 Identities=21% Similarity=0.496 Sum_probs=49.0
Q ss_pred cccccccc--cCCCCCeEEeccCCCCCCCcccCCC-CCCCCCC-------CccCccccCCCCc------ccccCccccCC
Q 016859 207 QSCKLCGK--ADNTSTMLLCDYCDEAFHPSCCNPR-IKILPTD-------NWLCQCCSNLNSN------VSQENSFLKSP 270 (381)
Q Consensus 207 ~~C~vC~~--~~~~~~LLlCD~Cd~ayH~~CL~PP-L~~iP~G-------~W~Cp~C~~~~~~------v~~e~~~~~~~ 270 (381)
.+|-||-. ..+.+.+|.||.|....|-.|+.-- -.+||.| .|||--|+..-.. -.+.+.|+...
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~GifKetD 199 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIFKETD 199 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcccccc
Confidence 37889864 4466789999999999999999842 1245554 5999999866431 12355566666
Q ss_pred CCccCC
Q 016859 271 NNSWMY 276 (381)
Q Consensus 271 ~i~W~~ 276 (381)
..+|.+
T Consensus 200 igrWvH 205 (707)
T KOG0957|consen 200 IGRWVH 205 (707)
T ss_pred hhhHHH
Confidence 667763
No 30
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=70.80 E-value=0.4 Score=37.94 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=19.2
Q ss_pred cccccccccC---CCCCeEEec--cCCCCCCCcccCCCCCCCCC-------CCccCccccCC
Q 016859 207 QSCKLCGKAD---NTSTMLLCD--YCDEAFHPSCCNPRIKILPT-------DNWLCQCCSNL 256 (381)
Q Consensus 207 ~~C~vC~~~~---~~~~LLlCD--~Cd~ayH~~CL~PPL~~iP~-------G~W~Cp~C~~~ 256 (381)
..|.+|...- +....+.|+ .|...||+.||.--+.+.+. -.+.||.|...
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 4588887642 233568898 89999999999533322211 13468888754
No 31
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=69.46 E-value=3.5 Score=38.84 Aligned_cols=41 Identities=29% Similarity=0.725 Sum_probs=32.7
Q ss_pred cccccccccC-----CCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCC
Q 016859 207 QSCKLCGKAD-----NTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNL 256 (381)
Q Consensus 207 ~~C~vC~~~~-----~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~ 256 (381)
.+|++|...+ +.+....|..|...||..|... =.||.|..-
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R~ 198 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCARR 198 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHhH
Confidence 5799998765 3457888999999999999993 139999754
No 32
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=68.69 E-value=2.8 Score=32.27 Aligned_cols=32 Identities=25% Similarity=0.791 Sum_probs=27.1
Q ss_pred cccccccccC-CCCCeEEeccCCCCCCCcccCC
Q 016859 207 QSCKLCGKAD-NTSTMLLCDYCDEAFHPSCCNP 238 (381)
Q Consensus 207 ~~C~vC~~~~-~~~~LLlCD~Cd~ayH~~CL~P 238 (381)
..|.+|++.- +.+.++.|..|..-||-.|+..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 5799999865 3567999999999999999964
No 33
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=66.77 E-value=2.1 Score=28.29 Aligned_cols=28 Identities=32% Similarity=0.789 Sum_probs=12.3
Q ss_pred ccccccccCCCCCeEEeccCCCCCCCcc
Q 016859 208 SCKLCGKADNTSTMLLCDYCDEAFHPSC 235 (381)
Q Consensus 208 ~C~vC~~~~~~~~LLlCD~Cd~ayH~~C 235 (381)
.|.+|++.......-.|..|+-..|+.|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhc
Confidence 5889998887667888999999999887
No 34
>PHA02926 zinc finger-like protein; Provisional
Probab=59.82 E-value=5.9 Score=38.67 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=23.9
Q ss_pred CCCCCCCccccccCC-----------CCCccchhhhhhhccccc
Q 016859 148 DISNSDISRLEVLDE-----------DPSAREFCVSVLRSNGLL 180 (381)
Q Consensus 148 d~~eCp~~~~~~~~e-----------e~s~~~~Cl~~l~~~~l~ 180 (381)
...+|++|.-.+... ..+.|.||+.|++.|...
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~ 212 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRT 212 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHh
Confidence 347899999664211 147899999999988743
No 35
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=57.04 E-value=4.2 Score=41.07 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=37.0
Q ss_pred cccccccccC------CCCCeEEeccCCCCCCCcccCCCCC---CCCCCCccCccccCC
Q 016859 207 QSCKLCGKAD------NTSTMLLCDYCDEAFHPSCCNPRIK---ILPTDNWLCQCCSNL 256 (381)
Q Consensus 207 ~~C~vC~~~~------~~~~LLlCD~Cd~ayH~~CL~PPL~---~iP~G~W~Cp~C~~~ 256 (381)
-.|.+|-++. ..+.|++|..|..+||.+|+.=+.. .+-...|.|..|.-+
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC 317 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELC 317 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhh
Confidence 4577876543 4457999999999999999974422 245568999998755
No 36
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=56.30 E-value=5.8 Score=33.06 Aligned_cols=30 Identities=37% Similarity=1.028 Sum_probs=24.8
Q ss_pred ccccccccccCCCCCeEEecc--CCCCCCCcccC
Q 016859 206 IQSCKLCGKADNTSTMLLCDY--CDEAFHPSCCN 237 (381)
Q Consensus 206 ~~~C~vC~~~~~~~~LLlCD~--Cd~ayH~~CL~ 237 (381)
...|.+|++.. ...+-|.. |...||..|..
T Consensus 55 ~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSG--GACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHH
Confidence 46799999863 26888987 99999999986
No 37
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=54.93 E-value=9.7 Score=35.66 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=17.8
Q ss_pred CCCCeEE-eccCCCCCCCcccCCC
Q 016859 217 NTSTMLL-CDYCDEAFHPSCCNPR 239 (381)
Q Consensus 217 ~~~~LLl-CD~Cd~ayH~~CL~PP 239 (381)
+.+.+|| |..|.++||+.-|-|+
T Consensus 119 N~~nVLFRC~~C~RawH~~HLP~~ 142 (175)
T PF15446_consen 119 NPDNVLFRCTSCHRAWHFEHLPPP 142 (175)
T ss_pred ChhheEEecCCccceeehhhCCCC
Confidence 3344555 9999999999988775
No 38
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=51.49 E-value=8.2 Score=35.61 Aligned_cols=20 Identities=45% Similarity=0.727 Sum_probs=17.0
Q ss_pred cccCCceeEeCCCCcccccC
Q 016859 300 VRIGESYQAEVPDWSDQISS 319 (381)
Q Consensus 300 vRiGr~Fqa~VP~Ws~~~~~ 319 (381)
+|+|..|||+||+|-.....
T Consensus 143 irvg~~~qa~~p~~~~~~~~ 162 (164)
T cd04709 143 IRVGPSYQAKLPDLQPFPSP 162 (164)
T ss_pred EEecCcccccCCcccCCCCC
Confidence 49999999999999876544
No 39
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=51.37 E-value=0.79 Score=32.35 Aligned_cols=42 Identities=24% Similarity=0.555 Sum_probs=27.2
Q ss_pred ccccccccCC-CCCeEEeccCCCCCCCcccCCCCCCCCCCCccCcccc
Q 016859 208 SCKLCGKADN-TSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCS 254 (381)
Q Consensus 208 ~C~vC~~~~~-~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~ 254 (381)
.|.+|...-. .+.++... |...||..|+..-|..- -.||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 4778877553 33444444 99999999998655442 2788774
No 40
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=46.19 E-value=3.4 Score=48.13 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=39.7
Q ss_pred ccccccccccCCCCCeEEecc-CCCCCCC-cccCCC--CCCCCCCCccCccccCCCC
Q 016859 206 IQSCKLCGKADNTSTMLLCDY-CDEAFHP-SCCNPR--IKILPTDNWLCQCCSNLNS 258 (381)
Q Consensus 206 ~~~C~vC~~~~~~~~LLlCD~-Cd~ayH~-~CL~PP--L~~iP~G~W~Cp~C~~~~~ 258 (381)
...|.+|+..+ .+|+|++ |+.+||+ .||.-. -..++++-|+|+.|...+-
T Consensus 428 ~rrl~Ie~~de---t~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM 481 (1414)
T KOG1473|consen 428 SRRLRIEGMDE---TLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQM 481 (1414)
T ss_pred eeeeEEecCCC---cEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhc
Confidence 35688888544 7999998 9999999 899832 2468999999999986643
No 41
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=44.55 E-value=12 Score=38.18 Aligned_cols=39 Identities=28% Similarity=0.663 Sum_probs=33.5
Q ss_pred CeEEeccCCCCCCCcc--cCCCCCCCCC-CCccCccccCCCC
Q 016859 220 TMLLCDYCDEAFHPSC--CNPRIKILPT-DNWLCQCCSNLNS 258 (381)
Q Consensus 220 ~LLlCD~Cd~ayH~~C--L~PPL~~iP~-G~W~Cp~C~~~~~ 258 (381)
.|+-||.|..+||..| .+.+-...|. ..|+|..|.....
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~ 115 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQD 115 (345)
T ss_pred hhhccccccccccccccccCchhhcCCccccccccccchhhh
Confidence 7889999999999999 9888877776 4699999987653
No 42
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=44.40 E-value=6.1 Score=26.26 Aligned_cols=42 Identities=21% Similarity=0.490 Sum_probs=27.5
Q ss_pred cccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccC
Q 016859 209 CKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSN 255 (381)
Q Consensus 209 C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~ 255 (381)
|.+|...-. ..+.-..|.-.||..|+..-+.. +...||.|..
T Consensus 2 C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhh--CceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 666665432 23344568888999999765443 5567988865
No 43
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=40.43 E-value=14 Score=29.59 Aligned_cols=28 Identities=29% Similarity=0.829 Sum_probs=23.8
Q ss_pred ccccccccc-CCCCCeEEec--cCCCCCCCcccC
Q 016859 207 QSCKLCGKA-DNTSTMLLCD--YCDEAFHPSCCN 237 (381)
Q Consensus 207 ~~C~vC~~~-~~~~~LLlCD--~Cd~ayH~~CL~ 237 (381)
..|.+|++. | ..+-|. .|...||..|..
T Consensus 37 ~~C~~C~~~~G---a~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 37 LKCSICKKKGG---ACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCCcCCCCCCC---eEEEEeCCCCCcEEChHHHc
Confidence 579999988 6 678886 599999999986
No 44
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=40.10 E-value=23 Score=37.73 Aligned_cols=47 Identities=21% Similarity=0.381 Sum_probs=34.3
Q ss_pred cccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCC
Q 016859 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (381)
Q Consensus 205 ~~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~~ 257 (381)
....|.+|.+++ .+++||.+..++|-.|.. ...|.+.|.|..|+.-.
T Consensus 88 ~~~~c~vc~~gg---s~v~~~s~~~~~~r~c~~---~~~~~c~~~~~d~~~~~ 134 (463)
T KOG1081|consen 88 EPSECFVCFKGG---SLVTCKSRIQAPHRKCKP---AQLEKCSKRCTDCRAFK 134 (463)
T ss_pred CcchhccccCCC---ccceeccccccccccCcC---ccCcccccCCcceeeec
Confidence 357899999999 488999777777777765 45666667766665543
No 45
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=38.36 E-value=11 Score=32.36 Aligned_cols=48 Identities=25% Similarity=0.693 Sum_probs=28.2
Q ss_pred cccccccccCCCCCeEEe------ccC---CCCCCCcccCCCCC-----CCCCCCccCccccC
Q 016859 207 QSCKLCGKADNTSTMLLC------DYC---DEAFHPSCCNPRIK-----ILPTDNWLCQCCSN 255 (381)
Q Consensus 207 ~~C~vC~~~~~~~~LLlC------D~C---d~ayH~~CL~PPL~-----~iP~G~W~Cp~C~~ 255 (381)
..|..|.+...+.. ..| ..| ...|=..||.-.-. .+..++|.||.|+.
T Consensus 8 ~~CHqCrqKt~~~~-~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFK-TICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCc-eEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 34666666544333 344 445 66666666643332 24567899999985
No 46
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=34.41 E-value=24 Score=26.51 Aligned_cols=16 Identities=31% Similarity=0.954 Sum_probs=11.9
Q ss_pred CCCCCCccCccccCCCC
Q 016859 242 ILPTDNWLCQCCSNLNS 258 (381)
Q Consensus 242 ~iP~G~W~Cp~C~~~~~ 258 (381)
.+|. +|.||.|...+.
T Consensus 30 ~Lp~-~w~CP~C~a~K~ 45 (50)
T cd00730 30 DLPD-DWVCPVCGAGKD 45 (50)
T ss_pred HCCC-CCCCCCCCCcHH
Confidence 4454 899999987654
No 47
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=31.63 E-value=38 Score=36.94 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=40.1
Q ss_pred cccccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCC--CccCccccCCC
Q 016859 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTD--NWLCQCCSNLN 257 (381)
Q Consensus 205 ~~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G--~W~Cp~C~~~~ 257 (381)
.+-+|.-|.-.+ ..|.|+.|-+.||.-|+.|- .+++.. -|.|+.|...+
T Consensus 59 ~d~~cfechlpg---~vl~c~vc~Rs~h~~c~sp~-~q~r~~s~p~~~p~p~s~k 109 (588)
T KOG3612|consen 59 IDPFCFECHLPG---AVLKCIVCHRSFHENCQSPD-PQKRNYSVPSDKPQPYSFK 109 (588)
T ss_pred CCcccccccCCc---ceeeeehhhccccccccCcc-hhhccccccccCCcccccC
Confidence 467899999888 69999999999999999986 556554 48898887553
No 48
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=29.88 E-value=11 Score=29.87 Aligned_cols=31 Identities=23% Similarity=0.481 Sum_probs=19.7
Q ss_pred CeEEeccCCCCCCCcccCCCCCCCCCCCccCcccc
Q 016859 220 TMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCS 254 (381)
Q Consensus 220 ~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~ 254 (381)
..+.=..|.-.||..|+..=|..- ..||.|+
T Consensus 43 ~~i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp S-EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred cceEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 334446799999999997544322 2788875
No 49
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=27.24 E-value=40 Score=24.34 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=23.7
Q ss_pred cccccccccC--CCCCeEEeccCCCCCCCcccC
Q 016859 207 QSCKLCGKAD--NTSTMLLCDYCDEAFHPSCCN 237 (381)
Q Consensus 207 ~~C~vC~~~~--~~~~LLlCD~Cd~ayH~~CL~ 237 (381)
..|.+|++.- ....-+.|..|....|..|+.
T Consensus 12 ~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 12 TYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp EB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 5788888744 455788999999999999987
No 50
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.19 E-value=34 Score=32.45 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=26.6
Q ss_pred CCCCCccccccCCCC----Cccchhhhhhhccccccccccccccc
Q 016859 150 SNSDISRLEVLDEDP----SAREFCVSVLRSNGLLGAVGECSVRS 190 (381)
Q Consensus 150 ~eCp~~~~~~~~ee~----s~~~~Cl~~l~~~~l~~~~~~Cp~~~ 190 (381)
..||+|+..+.++.+ +.|.||-.||+. .+.+...||+.+
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~--alk~~~~CP~C~ 174 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKD--ALKNTNKCPTCR 174 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHH--HHHhCCCCCCcc
Confidence 679999998776663 578999998863 233335555443
No 51
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=27.02 E-value=39 Score=27.29 Aligned_cols=32 Identities=28% Similarity=0.590 Sum_probs=21.4
Q ss_pred cccccccccccCCCCCeEEeccCCCCCCCcccC
Q 016859 205 VIQSCKLCGKADNTSTMLLCDYCDEAFHPSCCN 237 (381)
Q Consensus 205 ~~~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~ 237 (381)
....|.+|++.=....... --|+..||..|..
T Consensus 77 ~~~~C~vC~k~l~~~~f~~-~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVV-FPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEE-eCCCeEEeccccc
Confidence 3567999998654433332 2445889999974
No 52
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.66 E-value=62 Score=33.49 Aligned_cols=48 Identities=21% Similarity=0.506 Sum_probs=33.6
Q ss_pred cccccccccCCCCCeEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCC
Q 016859 207 QSCKLCGKADNTSTMLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLN 257 (381)
Q Consensus 207 ~~C~vC~~~~~~~~LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~~ 257 (381)
+.|.+|-+.-.....|-==-|...||..|.+|=|.+- .=+||-|+..-
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcC
Confidence 4899998754333333335678899999999977654 22799998753
No 53
>PHA02929 N1R/p28-like protein; Provisional
Probab=23.89 E-value=29 Score=33.95 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=34.0
Q ss_pred ccccccccccCCCCC-----eEEeccCCCCCCCcccCCCCCCCCCCCccCccccCCCCccc
Q 016859 206 IQSCKLCGKADNTST-----MLLCDYCDEAFHPSCCNPRIKILPTDNWLCQCCSNLNSNVS 261 (381)
Q Consensus 206 ~~~C~vC~~~~~~~~-----LLlCD~Cd~ayH~~CL~PPL~~iP~G~W~Cp~C~~~~~~v~ 261 (381)
+..|.+|...-.+.. ...=..|...||..|+..-+... =.||.|+..-..+.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~----~tCPlCR~~~~~v~ 230 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK----NTCPVCRTPFISVI 230 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC----CCCCCCCCEeeEEe
Confidence 467999987532111 12234788899999998765443 27999997755443
No 54
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=23.73 E-value=21 Score=36.06 Aligned_cols=52 Identities=25% Similarity=0.569 Sum_probs=38.9
Q ss_pred ccccccccc-------cCCCCCeEEeccCCCCCCCcccCCC---CCCCCCCCccCccccCCC
Q 016859 206 IQSCKLCGK-------ADNTSTMLLCDYCDEAFHPSCCNPR---IKILPTDNWLCQCCSNLN 257 (381)
Q Consensus 206 ~~~C~vC~~-------~~~~~~LLlCD~Cd~ayH~~CL~PP---L~~iP~G~W~Cp~C~~~~ 257 (381)
.-+|..|-. .+-++.|+-|..|.++=|.+||.=. +..|-...|.|-+|....
T Consensus 224 n~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~cs 285 (336)
T KOG1244|consen 224 NPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCS 285 (336)
T ss_pred CcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceec
Confidence 346777743 3456689999999999999999632 234566789999998775
No 55
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=23.50 E-value=74 Score=35.42 Aligned_cols=51 Identities=20% Similarity=0.533 Sum_probs=28.0
Q ss_pred ccccccccCCCCCeEEeccCCCCC-CCcccCCCCCCCCCCCccCccccCCCCcc
Q 016859 208 SCKLCGKADNTSTMLLCDYCDEAF-HPSCCNPRIKILPTDNWLCQCCSNLNSNV 260 (381)
Q Consensus 208 ~C~vC~~~~~~~~LLlCD~Cd~ay-H~~CL~PPL~~iP~G~W~Cp~C~~~~~~v 260 (381)
.|..|+... .+...+|..|.... |..|..-. ..+|.|.=||+.|-..-+.+
T Consensus 3 ~Cp~Cg~~n-~~~akFC~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~~~~~ 54 (645)
T PRK14559 3 ICPQCQFEN-PNNNRFCQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAETGTI 54 (645)
T ss_pred cCCCCCCcC-CCCCccccccCCCCCCCcCCCCC-CCCCcccccccccCCcccch
Confidence 344454332 22344555554432 23444332 45888888999998775543
No 56
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=23.07 E-value=64 Score=21.33 Aligned_cols=28 Identities=21% Similarity=0.565 Sum_probs=20.7
Q ss_pred ccccccccCCCCCeEEeccCCCCCCCcc
Q 016859 208 SCKLCGKADNTSTMLLCDYCDEAFHPSC 235 (381)
Q Consensus 208 ~C~vC~~~~~~~~LLlCD~Cd~ayH~~C 235 (381)
.|.+|++..+....-.|+.|.-..|..|
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCcc
Confidence 4889987665443666999997788877
No 57
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=22.85 E-value=54 Score=34.95 Aligned_cols=52 Identities=27% Similarity=0.522 Sum_probs=36.8
Q ss_pred ccccccccccC---CCCCeEEeccCCCCCCCcccCCCC--------CC---CCCCCccCccccCCC
Q 016859 206 IQSCKLCGKAD---NTSTMLLCDYCDEAFHPSCCNPRI--------KI---LPTDNWLCQCCSNLN 257 (381)
Q Consensus 206 ~~~C~vC~~~~---~~~~LLlCD~Cd~ayH~~CL~PPL--------~~---iP~G~W~Cp~C~~~~ 257 (381)
...|-+|.+-+ ++-.-+-||.|..+-|+.|-.--- .. ..++..+|..|-...
T Consensus 128 ~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~s 193 (446)
T PF07227_consen 128 RCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTS 193 (446)
T ss_pred cCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChh
Confidence 34799998754 445778899999999999974321 11 124479999997664
No 58
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.03 E-value=56 Score=22.09 Aligned_cols=13 Identities=23% Similarity=0.940 Sum_probs=10.0
Q ss_pred CCccCccccCCCC
Q 016859 246 DNWLCQCCSNLNS 258 (381)
Q Consensus 246 G~W~Cp~C~~~~~ 258 (381)
.+|.||.|-..+.
T Consensus 16 ~~~~CP~Cg~~~~ 28 (33)
T cd00350 16 APWVCPVCGAPKD 28 (33)
T ss_pred CCCcCcCCCCcHH
Confidence 5699999977643
No 59
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=21.68 E-value=62 Score=30.89 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=21.6
Q ss_pred CCCCCccccccCCC--CCccchhhhhhhccc
Q 016859 150 SNSDISRLEVLDED--PSAREFCVSVLRSNG 178 (381)
Q Consensus 150 ~eCp~~~~~~~~ee--~s~~~~Cl~~l~~~~ 178 (381)
.+||+|.-.+...- .+.|.||-.||..|-
T Consensus 19 ~~CpICld~~~dPVvT~CGH~FC~~CI~~wl 49 (193)
T PLN03208 19 FDCNICLDQVRDPVVTLCGHLFCWPCIHKWT 49 (193)
T ss_pred cCCccCCCcCCCcEEcCCCchhHHHHHHHHH
Confidence 68999987642221 488999999998773
No 60
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=21.14 E-value=30 Score=37.32 Aligned_cols=22 Identities=36% Similarity=0.987 Sum_probs=17.3
Q ss_pred ccccCCceeEeCCCCcccccCC
Q 016859 299 RVRIGESYQAEVPDWSDQISSN 320 (381)
Q Consensus 299 ~vRiGr~Fqa~VP~Ws~~~~~~ 320 (381)
.+|+|.+|||+||+|-.---+|
T Consensus 166 eIRVG~kYQA~i~e~l~EgEeD 187 (693)
T KOG3554|consen 166 EIRVGEKYQADIPEWLEEGEED 187 (693)
T ss_pred ceeecccccccchHHHHhcccc
Confidence 4599999999999997644343
No 61
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=20.19 E-value=55 Score=35.60 Aligned_cols=31 Identities=26% Similarity=0.754 Sum_probs=23.5
Q ss_pred cccccccccCCCCCeEEec--cCCCCCCCcccCCC
Q 016859 207 QSCKLCGKADNTSTMLLCD--YCDEAFHPSCCNPR 239 (381)
Q Consensus 207 ~~C~vC~~~~~~~~LLlCD--~Cd~ayH~~CL~PP 239 (381)
-.|.+|...+. .-+.|. .|-++||..|..-+
T Consensus 304 l~C~iCk~~~G--tcIqCs~~nC~~aYHVtCArra 336 (669)
T COG5141 304 LGCLICKEFGG--TCIQCSYFNCTRAYHVTCARRA 336 (669)
T ss_pred heeeEEcccCc--ceeeecccchhhhhhhhhhhhc
Confidence 46999987543 567774 69999999998643
No 62
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=20.09 E-value=49 Score=24.61 Aligned_cols=16 Identities=38% Similarity=1.032 Sum_probs=9.1
Q ss_pred CCCCCCccCccccCCCC
Q 016859 242 ILPTDNWLCQCCSNLNS 258 (381)
Q Consensus 242 ~iP~G~W~Cp~C~~~~~ 258 (381)
.+|. +|.||.|...+.
T Consensus 30 ~Lp~-~w~CP~C~a~K~ 45 (47)
T PF00301_consen 30 DLPD-DWVCPVCGAPKS 45 (47)
T ss_dssp GS-T-T-B-TTTSSBGG
T ss_pred HCCC-CCcCcCCCCccc
Confidence 3443 699999987753
Done!