Citrus Sinensis ID: 016860

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-

MQWSRFIWIMLVIWNLLPSALNLLTLTSQDTVTPFLRQVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEEE

ccHHHHHHHHHHHHHHHHcccccccccccccccccHHHEEEEccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHccccc

ccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHcccHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHccc

MQWSRFIWIMLVIWNLLPSAlnlltltsqdtvtPFLRQVVftggrtqpgttkpdegerhsysiidcepqreailpSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSqklsglppetvfqpllkdnlvgkGLVLSFITDFFKEYLVDNSLDDLIAILKRGkmednlldffpsskrsaegfsehftkegliplveyneKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVkdaklpdieVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSlydqdvlaeDTILYWFrkgtnpkgrQTFVKALEPFVKWLEEAEEEE

MQWSRFIWIMLVIWNLLPSALNLLTLTSQDTVTPFLRQVVftggrtqpgttkpdegerhsysiidcepqreaILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFsehftkegliplveyNEKKIFEVKLKDMKSTLTTqiaeetemseviesvkqrvkdaklpdiEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEEE

MQWSRFIWIMLVIWnllpsalnlltltsQDTVTPFLRQVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKnqqqnanaaLRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEEE

**WSRFIWIMLVIWNLLPSALNLLTLTSQDTVTPFLRQVVFTG*****************YSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFF*********FSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTT**************VKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKW********

**WSRFIWIMLVIWNLLPSALNLLTLTSQDTVTPFLRQVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNL*****************FTKEGLIPL***************************TEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWF**************ALEPFVKW*EE*****

MQWSRFIWIMLVIWNLLPSALNLLTLTSQDTVTPFLRQVVFTGGRTQ***********HSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEEE

*QWSRFIWIMLVIWNLLPSALNLLTLTSQDTVTPFLRQVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEA****

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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		381	2.2.26 [Sep-21-2011]
Q5ZL42		414	Basic leucine zipper and	yes	no	0.887	0.816	0.295	7e-47
Q2L4X1		419	Basic leucine zipper and	N/A	no	0.879	0.799	0.292	9e-46
Q91VK1		419	Basic leucine zipper and	yes	no	0.879	0.799	0.292	9e-46
Q9WTT7		419	Basic leucine zipper and	yes	no	0.879	0.799	0.292	1e-45
Q4R6R4		419	Basic leucine zipper and	N/A	no	0.879	0.799	0.292	1e-45
Q9Y6E2		419	Basic leucine zipper and	yes	no	0.879	0.799	0.292	1e-45
Q6PD83		419	Basic leucine zipper and	yes	no	0.879	0.799	0.286	3e-44
Q6P7P5		419	Basic leucine zipper and	no	no	0.874	0.794	0.287	5e-43
Q9CQC6		419	Basic leucine zipper and	no	no	0.874	0.794	0.287	5e-43
Q7L1Q6		419	Basic leucine zipper and	no	no	0.874	0.794	0.287	5e-43

>sp\|Q5ZL42\|BZW2_CHICK Basic leucine zipper and W2 domain-containing protein 2 OS=Gallus gallus GN=BZW2 PE=2 SV=1	Back alignment and function desciption

 Score =  188 bits (477), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 194/345 (56%), Gaps = 7/345 (2%)

Query: 39  VVFTGGRTQPGTTKPDEGERHS---YSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLE 95
           ++  G    PG T+ D+ ++     + +   E   +AI        K++RR  +L K  E
Sbjct: 71  ILVAGSMLAPGGTRIDDNDKTKMTRHCVFFAEEDHDAIRNYAQVFNKLIRRYKYLEKAFE 130

Query: 96  NVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFI 155
           +  ++ +  L+ F E E+ KLA+ + +  +   +G  P T+   L  DN+V +G+  SF 
Sbjct: 131 DEIKKLLLFLKAFSETEQTKLAMLSGILLA---NGTLPATILTSLFTDNIVKEGIAASFA 187

Query: 156 TDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNE 215
              FK ++ +   + + + L++  ++  LL+ FP+++++ + F+++FT+ GL  L ++  
Sbjct: 188 VKLFKAWMAEKDANSVTSALRKANLDKRLLELFPANRQNVDHFAKYFTEAGLKELSDFLR 247

Query: 216 KKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQW 275
            +      K+++  L  ++++E  + E++  VK+ +K  +LP+  V+ +LW  +M+AV+W
Sbjct: 248 VQQSLGTRKELQKELQERLSQECPIKEMVLYVKEEMKRNELPEPAVIGLLWTCVMNAVEW 307

Query: 276 SGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRS 335
           + K ++  A  AL+ +K +A LL  F T  + EL L+ KVQ  CY++   MK F +IV  
Sbjct: 308 N-KKEELVAEQALKHLKQYAPLLAVFSTQGQSELILLQKVQEYCYDNIHFMKAFQKIVVL 366

Query: 336 LYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEE 380
            Y  DVL+E+ IL W+++    KG+  F+  ++ FV+WL+ AEEE
Sbjct: 367 FYKADVLSEEAILKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEE 411

May be involved in neuronal differentiation.
Gallus gallus (taxid: 9031)

>sp\|Q2L4X1\|BZW2_MUSMM Basic leucine zipper and W2 domain-containing protein 2 OS=Mus musculus molossinus GN=Bzw2 PE=2 SV=1	Back alignment and function description

>sp\|Q91VK1\|BZW2_MOUSE Basic leucine zipper and W2 domain-containing protein 2 OS=Mus musculus GN=Bzw2 PE=1 SV=1	Back alignment and function description

>sp\|Q9WTT7\|BZW2_RAT Basic leucine zipper and W2 domain-containing protein 2 OS=Rattus norvegicus GN=Bzw2 PE=2 SV=1	Back alignment and function description

>sp\|Q4R6R4\|BZW2_MACFA Basic leucine zipper and W2 domain-containing protein 2 OS=Macaca fascicularis GN=BZW2 PE=2 SV=1	Back alignment and function description

>sp\|Q9Y6E2\|BZW2_HUMAN Basic leucine zipper and W2 domain-containing protein 2 OS=Homo sapiens GN=BZW2 PE=1 SV=1	Back alignment and function description

>sp\|Q6PD83\|BZW1A_DANRE Basic leucine zipper and W2 domain-containing protein 1-A OS=Danio rerio GN=bzw1a PE=2 SV=1	Back alignment and function description

>sp\|Q6P7P5\|BZW1_RAT Basic leucine zipper and W2 domain-containing protein 1 OS=Rattus norvegicus GN=Bzw1 PE=2 SV=1	Back alignment and function description

>sp\|Q9CQC6\|BZW1_MOUSE Basic leucine zipper and W2 domain-containing protein 1 OS=Mus musculus GN=Bzw1 PE=1 SV=1	Back alignment and function description

>sp\|Q7L1Q6\|BZW1_HUMAN Basic leucine zipper and W2 domain-containing protein 1 OS=Homo sapiens GN=BZW1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		381
224146166		411	predicted protein [Populus trichocarpa]	0.884	0.819	0.916	0.0
224128908		411	predicted protein [Populus trichocarpa]	0.884	0.819	0.916	0.0
255547564		411	translation initiation factor, putative	0.884	0.819	0.908	0.0
192912980		411	translation initiation factor [Elaeis gu	0.902	0.836	0.877	1e-180
359476759		411	PREDICTED: basic leucine zipper and W2 d	0.884	0.819	0.899	1e-179
297735255		429	unnamed protein product [Vitis vinifera]	0.884	0.785	0.899	1e-178
449442269		411	PREDICTED: basic leucine zipper and W2 d	0.884	0.819	0.881	1e-178
356531892		411	PREDICTED: basic leucine zipper and W2 d	0.884	0.819	0.875	1e-174
358248062		411	uncharacterized protein LOC100789838 [Gl	0.884	0.819	0.872	1e-174
357507787		411	Basic leucine zipper and W2 domain-conta	0.884	0.819	0.863	1e-172

>gi\|224146166\|ref\|XP_002325904.1\| predicted protein [Populus trichocarpa] gi\|118482262\|gb\|ABK93058.1\| unknown [Populus trichocarpa] gi\|222862779\|gb\|EEF00286.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/337 (91%), Positives = 327/337 (97%)

Query: 38  QVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENV 97
           +VVFTGGRTQPGTTKPDEGERH YSIIDCEP RE ILPSVIY QKILRR+PFLIKNLENV
Sbjct: 68  EVVFTGGRTQPGTTKPDEGERHPYSIIDCEPTREIILPSVIYTQKILRRKPFLIKNLENV 127

Query: 98  TRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITD 157
            RRF+QSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLV KG+VLSFITD
Sbjct: 128 MRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGIVLSFITD 187

Query: 158 FFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKK 217
           FFKEYLVDNSLDDLI+ILKRGKME+NL+DFFPS+KRSAEGFSEHF+KEGLIPLVEYNEKK
Sbjct: 188 FFKEYLVDNSLDDLISILKRGKMEENLMDFFPSAKRSAEGFSEHFSKEGLIPLVEYNEKK 247

Query: 218 IFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSG 277
           IFEVKLK+MKS LTTQIAEE +MSEVI++VKQRVKDAKLPDIE+VRILWD+LMDAVQWSG
Sbjct: 248 IFEVKLKEMKSALTTQIAEEADMSEVIDTVKQRVKDAKLPDIEIVRILWDVLMDAVQWSG 307

Query: 278 KNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLY 337
           KNQQQNAN+ALRQVKTWAQLLNTFCTN KLELEL+YKVQMQCYEDAKLMKLFPEIVRSLY
Sbjct: 308 KNQQQNANSALRQVKTWAQLLNTFCTNGKLELELLYKVQMQCYEDAKLMKLFPEIVRSLY 367

Query: 338 DQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWL 374
           DQDVLAEDTIL+WFRKGTNPKGRQTFVKALEPFV WL
Sbjct: 368 DQDVLAEDTILHWFRKGTNPKGRQTFVKALEPFVNWL 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224128908\|ref\|XP_002328996.1\| predicted protein [Populus trichocarpa] gi\|118485433\|gb\|ABK94573.1\| unknown [Populus trichocarpa] gi\|222839230\|gb\|EEE77581.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255547564\|ref\|XP_002514839.1\| translation initiation factor, putative [Ricinus communis] gi\|223545890\|gb\|EEF47393.1\| translation initiation factor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|192912980\|gb\|ACF06598.1\| translation initiation factor [Elaeis guineensis]	Back alignment and taxonomy information

>gi\|359476759\|ref\|XP_002270681.2\| PREDICTED: basic leucine zipper and W2 domain-containing protein 2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297735255\|emb\|CBI17617.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449442269\|ref\|XP_004138904.1\| PREDICTED: basic leucine zipper and W2 domain-containing protein 2-like [Cucumis sativus] gi\|449477782\|ref\|XP_004155121.1\| PREDICTED: basic leucine zipper and W2 domain-containing protein 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356531892\|ref\|XP_003534510.1\| PREDICTED: basic leucine zipper and W2 domain-containing protein 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|358248062\|ref\|NP_001240059.1\| uncharacterized protein LOC100789838 [Glycine max] gi\|255641368\|gb\|ACU20961.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|357507787\|ref\|XP_003624182.1\| Basic leucine zipper and W2 domain-containing protein [Medicago truncatula] gi\|355499197\|gb\|AES80400.1\| Basic leucine zipper and W2 domain-containing protein [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		381
TAIR\|locus:2183602		411	AT5G36230 "AT5G36230" [Arabido	0.902	0.836	0.799	3.3e-150
TAIR\|locus:2200400		411	AT1G65220 "AT1G65220" [Arabido	0.902	0.836	0.758	1.3e-141
UNIPROTKB\|A6H7D7		419	BZW2 "BZW2 protein" [Bos tauru	0.895	0.813	0.295	3e-46
UNIPROTKB\|F1NCN8		421	BZW2 "Basic leucine zipper and	0.895	0.809	0.290	4.8e-46
UNIPROTKB\|F1NM03		419	BZW2 "Basic leucine zipper and	0.895	0.813	0.290	4.8e-46
UNIPROTKB\|Q5ZL42		414	BZW2 "Basic leucine zipper and	0.895	0.823	0.290	4.8e-46
UNIPROTKB\|F1PUT4		419	BZW2 "Uncharacterized protein"	0.895	0.813	0.293	1e-45
UNIPROTKB\|Q9Y6E2		419	BZW2 "Basic leucine zipper and	0.895	0.813	0.293	1e-45
UNIPROTKB\|Q2L4X1		419	Bzw2 "Basic leucine zipper and	0.895	0.813	0.293	1e-45
MGI\|MGI:1914162		419	Bzw2 "basic leucine zipper and	0.895	0.813	0.293	1e-45

TAIR\|locus:2183602 AT5G36230 "AT5G36230" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
 Identities = 275/344 (79%), Positives = 313/344 (90%)

Query:    38 QVVFTGGRTQPGTTKPDEGERHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENV 97
             +V+F GGRTQPGT K DEGERH+YS+IDCEP+REAILPSV+YIQKILRR+PFLIKNLENV
Sbjct:    68 EVIFIGGRTQPGTVKSDEGERHTYSVIDCEPKREAILPSVVYIQKILRRKPFLIKNLENV 127

Query:    98 TRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITD 157
             TRRF+QSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLV KG+VLSF+TD
Sbjct:   128 TRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGIVLSFVTD 187

Query:   158 FFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKK 217
             FFKEYLV+NSL+DLI+IL+RGKMEDNL+DF P  +RSAE F+EHFT EGL  LVEY+ KK
Sbjct:   188 FFKEYLVENSLEDLISILRRGKMEDNLMDFLPPVRRSAESFAEHFTNEGLTDLVEYHSKK 247

Query:   218 IFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSG 277
             +FEVKL+++K+ LT+++ EE+ + EVIESVKQ++KDAKLPDIEVVR++WD LMDAVQWSG
Sbjct:   248 MFEVKLREIKTVLTSKVTEESNVDEVIESVKQQIKDAKLPDIEVVRVVWDGLMDAVQWSG 307

Query:   278 KXXXXXXXXXLRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLY 337
             K         LRQVKTWA LLNTFCT+ KLELELMYKVQMQCYEDAKLMK+FPE+VRSLY
Sbjct:   308 KNQQQNANSVLRQVKTWAPLLNTFCTSGKLELELMYKVQMQCYEDAKLMKVFPEVVRSLY 367

Query:   338 DQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEEE 381
             + DVLAEDTIL+WFRKGTN KGRQTFVK+LEPFV WLEEAEEEE
Sbjct:   368 ELDVLAEDTILHWFRKGTNSKGRQTFVKSLEPFVNWLEEAEEEE 411

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006446 "regulation of translational initiation" evidence=ISS

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR\|locus:2200400 AT1G65220 "AT1G65220" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|A6H7D7 BZW2 "BZW2 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NCN8 BZW2 "Basic leucine zipper and W2 domain-containing protein 2" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NM03 BZW2 "Basic leucine zipper and W2 domain-containing protein 2" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZL42 BZW2 "Basic leucine zipper and W2 domain-containing protein 2" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PUT4 BZW2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y6E2 BZW2 "Basic leucine zipper and W2 domain-containing protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2L4X1 Bzw2 "Basic leucine zipper and W2 domain-containing protein 2" [Mus musculus molossinus (taxid:57486)]	Back alignment and assigned GO terms

MGI\|MGI:1914162 Bzw2 "basic leucine zipper and W2 domains 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		381
cd11560		194	cd11560, W2_eIF5C_like, C-terminal W2 domain of th	6e-93
smart00515		83	smart00515, eIF5C, Domain at the C-termini of GCD6	6e-25
pfam02020		75	pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon	1e-16
cd11561		157	cd11561, W2_eIF5, C-terminal W2 domain of eukaryot	2e-14
cd11558		169	cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of	2e-14
cd11473		135	cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/	2e-10

>gnl\|CDD\|211398 cd11560, W2_eIF5C_like, C-terminal W2 domain of the eukaryotic translation initiation factor 5C and similar proteins	Back alignment and domain information

 Score =  276 bits (708), Expect = 6e-93
 Identities = 99/195 (50%), Positives = 139/195 (71%), Gaps = 1/195 (0%)

Query: 186 DFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIE 245
           +FFP +KR+ E F+EHF +EGL  LVE+  K+  +   K+++  L   IAEE  + E+I 
Sbjct: 1   EFFPPNKRTEEHFAEHFKEEGLDELVEFYRKQASQEIKKELQQELKEMIAEEEPVKEIIA 60

Query: 246 SVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNA 305
           +VK+++K + LP+ EVV +LW  LMDAV+WS K + Q A  ALR +K +A LL  FCT A
Sbjct: 61  AVKEQMKKSSLPEHEVVGLLWTALMDAVEWSKK-EDQIAEQALRHLKKYAPLLAAFCTTA 119

Query: 306 KLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVK 365
           + EL L+ K+Q  CYE+ K MK+F +IV+ LY  DVL+ED IL W++KG +PKG+Q F+K
Sbjct: 120 RAELALLNKIQEYCYENMKFMKVFQKIVKLLYKADVLSEDAILKWYKKGHSPKGKQVFLK 179

Query: 366 ALEPFVKWLEEAEEE 380
            +EPFV+WL+EAEEE
Sbjct: 180 QMEPFVEWLQEAEEE 194

eIF5C appears to be essential for the initiation of protein translation; its actual function, and specifically that of the C-terminal W2 domain, are not well understood. The Drosophila ortholog, kra (krasavietz) or exba (extra bases), may be involved in translational inhibition in neural development. The structure of this C-terminal domain resembles that of a set of concatenated HEAT repeats. Length = 194

>gnl\|CDD\|214705 smart00515, eIF5C, Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5	Back alignment and domain information

>gnl\|CDD\|216850 pfam02020, W2, eIF4-gamma/eIF5/eIF2-epsilon	Back alignment and domain information

>gnl\|CDD\|211399 cd11561, W2_eIF5, C-terminal W2 domain of eukaryotic translation initiation factor 5	Back alignment and domain information

>gnl\|CDD\|211396 cd11558, W2_eIF2B_epsilon, C-terminal W2 domain of eukaryotic translation initiation factor 2B epsilon	Back alignment and domain information

>gnl\|CDD\|211395 cd11473, W2, C-terminal domain of eIF4-gamma/eIF5/eIF2b-epsilon	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		381
KOG2297		412	consensus Predicted translation factor, contains W	100.0
KOG1461		673	consensus Translation initiation factor 2B, epsilo	99.91
smart00515		83	eIF5C Domain at the C-termini of GCD6, eIF-2B epsi	99.87
PF02020		84	W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003	99.85
KOG2767		400	consensus Translation initiation factor 5 (eIF-5)	99.55
PF09090		253	MIF4G_like_2: MIF4G like; InterPro: IPR015174 This	97.22
KOG1104		759	consensus Nuclear cap-binding complex, subunit NCB	94.55
KOG2140		739	consensus Uncharacterized conserved protein [Gener	93.89
KOG0401		970	consensus Translation initiation factor 4F, riboso	87.26
smart00544		113	MA3 Domain in DAP-5, eIF4G, MA-3 and other protein	83.14
PF02847		113	MA3: MA3 domain; InterPro: IPR003891 This entry re	82.8

>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Probab=100.00  E-value=5.7e-104  Score=753.06  Aligned_cols=349  Identities=47%  Similarity=0.798  Sum_probs=343.2

Q ss_pred             ccccccceeeeeeecCcCCCCcccCCCCC-CCCceeeccCcchhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhc
Q 016860           29 QDTVTPFLRQVVFTGGRTQPGTTKPDEGE-RHSYSIIDCEPQREAILPSVIYIQKILRRRPFLIKNLENVTRRFMQSLEL  107 (381)
Q Consensus        29 ~~~~~~~lf~il~~Gg~l~pgg~~~~d~~-~~~~~if~~~~~~~~~~~~~~~~~kl~rrykyL~k~~e~~~~~~l~~l~~  107 (381)
                      -.+|+|.||||+|+||+++|||+.+|||+ +|+||||+|++++|+|++|+|||||||||||||+|+|||+|+|+|+||++
T Consensus        62 ~~rYgd~~fdil~~gg~~~pg~~~sddge~~t~~cvfda~e~~E~i~~~~qvf~KliRRykyLeK~fE~e~~k~Llflk~  141 (412)
T KOG2297|consen   62 YRRYGDILFDILFAGGRLQPGGVKSDDGERHTSYCVFDAEEKREAIRNSVQVFQKLIRRYKYLEKNFENEMRKFLLFLKL  141 (412)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCccccccCccCceeEeecCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            35799999999999999999999999997 56799999999999999999999999999999999999999999999999


Q ss_pred             cChhhhHHHHHHHHHHHhhhcCCCCCccchhhhhhhcccCCCchHHHHHHHHHHHHHhCChhHHHHHHHhCCCchhhhhh
Q 016860          108 FEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDF  187 (381)
Q Consensus       108 f~~~~r~kLA~~~a~~~~~~~~g~~~~~~l~~l~~~~Lv~~G~a~~fl~~i~~~~~~~~~~~~l~~~lr~sgl~~~l~~f  187 (381)
                      |++++|+|||++||++++   +|++|+++|++|+|||||++|++++|++++|++|+.|+|++.|+++||+++|++||++|
T Consensus       142 F~e~Er~KLA~~Tal~l~---nGt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~i~~lis~Lrkg~md~rLmef  218 (412)
T KOG2297|consen  142 FEENERKKLAMLTALLLS---NGTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKDINDLISSLRKGKMDDRLMEF  218 (412)
T ss_pred             cCHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhccHHHHHHHHHhcChHhHHHHh
Confidence            999999999999999999   99999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhhHHHHHHhcCCCccccchhhhhhHhHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCCCHHHHHHHHHH
Q 016860          188 FPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWD  267 (381)
Q Consensus       188 ~P~~kr~~e~~~~~~~~~gL~~l~~~~~~~~~~~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~l~~  267 (381)
                      ||||+||.|+|.+||.++||.++++|++.|+++..++|+++.|+..+.++.|.++|+..||+.+...|+|+++||+++|+
T Consensus       219 fPpnkrs~E~Fak~Ft~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs  298 (412)
T KOG2297|consen  219 FPPNKRSVEHFAKYFTDAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWS  298 (412)
T ss_pred             cCCcchhHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhccchHHHhHHHHHHHHhhhccccchhhH
Q 016860          268 ILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTI  347 (381)
Q Consensus       268 alm~~v~~s~k~~~~~~~~~~~~lk~~~pLL~~f~~~~~~Ql~lL~AlQ~~c~e~~~~~k~f~~Il~~LYd~DVVsEeaI  347 (381)
                      +||+.++||++ ++++++++++++++|+|||.+||+++++++.+|+.+|.|||+|.++|+.|++|+..||..||++||+|
T Consensus       299 ~iMsaveWnKk-eelva~qalrhlK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~I  377 (412)
T KOG2297|consen  299 GIMSAVEWNKK-EELVAEQALRHLKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETI  377 (412)
T ss_pred             hhhHHHhhchH-HHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            99999999955 88999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCcchhHHHHHhHHHHHHHHhhcccCC
Q 016860          348 LYWFRKGTNPKGRQTFVKALEPFVKWLEEAEEEE  381 (381)
Q Consensus       348 lkW~~~~~~~~Gk~~~lk~~~~Fv~WLeEAEEEs  381 (381)
                      ++||++++.++||++|++|++|||+||++|||||
T Consensus       378 L~Wyk~gh~~KGk~~FleqmkkFVeWL~~AEEEs  411 (412)
T KOG2297|consen  378 LKWYKEGHVAKGKSVFLEQMKKFVEWLQNAEEES  411 (412)
T ss_pred             HHHHHhccccccHHHHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999999999999996

>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5	Back alignment and domain information

>PF02020 W2: eIF4-gamma/eIF5/eIF2-epsilon; InterPro: IPR003307 This entry represents the W2 domain (two invariant tryptophans) and is a region of ~165 amino acids which is found in the C terminus of the following eIFs [, , , ]: Eukaryotic translation initiation factor 2B epsilon (eIF-2B-epsilon) Eukaryotic translation initiation factor 4 gamma (eIF-4-gamma) Eukaryotic translation initiation factor 5 (eIF-5), a GTPase-activating protein (GAP) specific for eIF2 Translation initiation is a sophisticated, well regulated and highly coordinated cellular process in eukaryotes, in which at least 11 eukayrotic initiation factors (eIFs) are included []

Back alignment and domain information

>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain	Back alignment and domain information

>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]	Back alignment and domain information

>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]	Back alignment and domain information

>KOG0401 consensus Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins	Back alignment and domain information

>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		381
2iu1_A		208	Crystal Structure Of Eif5 C-Terminal Domain Length		2e-06

>pdb|2IU1|A Chain A, Crystal Structure Of Eif5 C-Terminal Domain Length = 208

Back alignment and structure

Iteration: 1

Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 6/94 (6%) Query: 290 QVKTWAQLLNTFC-TNAKLELELMYKVQ-MQCYEDAKLMKLFPEIVRSLYDQDVLAEDTI 347 Q+K + + FC N K + L++ ++ + A+L+ P I++ +YD D+L E+ I Sbjct: 61 QIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMYDADLLEEEVI 120 Query: 348 LYWFRKGTNPKGRQTFVKAL----EPFVKWLEEA 377 + W K + + K + EPF+KWL+EA Sbjct: 121 ISWSEKASKKYVSKELAKEIRVKAEPFIKWLKEA 154

PyMOL of 2iu1

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		381
1ug3_A		339	EIF4GI, eukaryotic protein synthesis initiation fa	2e-33
3jui_A		182	Translation initiation factor EIF-2B subunit EPSI;	4e-32
1paq_A		189	Translation initiation factor EIF-2B epsilon subun	1e-29
3d3m_A		168	Eukaryotic translation initiation factor 4 gamma 2	2e-28
3l6a_A		364	Eukaryotic translation initiation factor 4 gamma;	1e-25
2iu1_A		208	EIF5, eukaryotic translation initiation factor 5;	5e-23
2ful_A		177	EIF-5, eukaryotic translation initiation factor 5;	4e-21
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 Length = 339	Back alignment and structure

 Score =  126 bits (317), Expect = 2e-33
 Identities = 42/278 (15%), Positives = 91/278 (32%), Gaps = 9/278 (3%)

Query: 80  IQKILRRRPFLIKNLENVTRRFMQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQP 139
           + ++L                 ++  E  E +          L       G  P      
Sbjct: 69  LHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFR 128

Query: 140 LLKDNLVGKGLVLSFITDFFKEYLVDNSLDDLIAILKRGKMEDNLLDFFPSSKRSAEGFS 199
            +   L   G   S + +             +  + +   +  +  +F P  +      +
Sbjct: 129 EITKPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWREAGL--SWKEFLPEGQDIGAFVA 186

Query: 200 EHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDI 259
           E   +  L    E   +    +  +++   L   + E +    V + ++  + + ++   
Sbjct: 187 EQKVEYTLGEESEAPGQ--RALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSN 244

Query: 260 EVVRILWDILMDAVQWSGKNQQQNANAALRQVKTWAQLLNTFCTNAKLELELMYKVQMQC 319
            +VR L    M AV +S    +      +  +K  A+LL  +  + + EL+ +Y +Q   
Sbjct: 245 TLVRAL----MTAVCYSAIIFETPLRVDVAVLKARAKLLQKYLCDEQKELQALYALQALV 300

Query: 320 YEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNP 357
               +   L      +LYD+DV+ ED    W     +P
Sbjct: 301 VTLEQPPNLLRMFFDALYDEDVVKEDAFYSW-ESSKDP 337

PyMOL of 1ug3

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} Length = 182	Back alignment and structure

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14 Length = 189	Back alignment and structure

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens} Length = 168	Back alignment and structure

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens} Length = 364	Back alignment and structure

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens} Length = 208	Back alignment and structure

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae} Length = 177	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		381
3l6a_A		364	Eukaryotic translation initiation factor 4 gamma;	100.0
1ug3_A		339	EIF4GI, eukaryotic protein synthesis initiation fa	100.0
3jui_A		182	Translation initiation factor EIF-2B subunit EPSI;	100.0
1paq_A		189	Translation initiation factor EIF-2B epsilon subun	100.0
3d3m_A		168	Eukaryotic translation initiation factor 4 gamma 2	99.97
2ful_A		177	EIF-5, eukaryotic translation initiation factor 5;	99.92
2iu1_A		208	EIF5, eukaryotic translation initiation factor 5;	99.88
1h2v_C		771	80 kDa nuclear CAP binding protein; CAP-binding-co	98.0
2zu6_B		307	Programmed cell death protein 4; protein-protein c	92.81
2rg8_A		165	Programmed cell death protein 4; MA3 domain, heat	92.14
3eiq_C		358	Programmed cell death protein 4; PDCD4, anti-oncog	89.67

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=2.6e-46  Score=373.43  Aligned_cols=260  Identities=17%  Similarity=0.301  Sum_probs=223.5

Q ss_pred             HHHHHHHhhccChhh------hHHHHHHHHHHHhhhcCCCCCccchhhhhhhcccCCCchHHHHHHHHHHHHHhCChhHH
Q 016860           98 TRRFMQSLELFEENE------RKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLSFITDFFKEYLVDNSLDDL  171 (381)
Q Consensus        98 ~~~~l~~l~~f~~~~------r~kLA~~~a~~~~~~~~g~~~~~~l~~l~~~~Lv~~G~a~~fl~~i~~~~~~~~~~~~l  171 (381)
                      .+++..+++..++..      ..+||.++|+++.   +|.+|++.+...     +++|.+++|++++|+.+++++|.+++
T Consensus        86 ~~Gf~~lle~l~Dl~iDiP~a~~~la~f~ar~i~---~~~l~~~~l~~~-----l~~G~~~~l~l~vl~~~~k~~G~~~l  157 (364)
T 3l6a_A           86 MQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAII---SELVSISELAQP-----LESGTHFPLFLLCLQQLAKLQDREWL  157 (364)
T ss_dssp             HHHHHHHHHTHHHHHHHCTTHHHHHHHHHHHHHH---TTSSCHHHHHHH-----HGGGTTTTHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHhhChHhccccccHHHHHHHHHHHHHH---cCCCCHHHHHHH-----hcccchHHHHHHHHHHHHHhcCHHHH
Confidence            444444555554444      6999999999999   999999999864     45699999999999999999999999


Q ss_pred             HHHHHhCCCchhhhhhCCCCCCChhhHHHHHHhcCCCccccchhhhhhHhHHHHHHHHHHHHHhhcCChhHHHHHHHHHh
Q 016860          172 IAILKRGKMEDNLLDFFPSSKRSAEGFSEHFTKEGLIPLVEYNEKKIFEVKLKDMKSTLTTQIAEETEMSEVIESVKQRV  251 (381)
Q Consensus       172 ~~~lr~sgl~~~l~~f~P~~kr~~e~~~~~~~~~gL~~l~~~~~~~~~~~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~  251 (381)
                      +++||+||++  |++|||+++|+.+++.++|+++||++++++.          +++++|.++++++.++++|+.||+++.
T Consensus       158 ~~l~~~sgl~--l~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~----------~l~~~L~~~l~~~~~~~~i~~wik~n~  225 (364)
T 3l6a_A          158 TELFQQSKVN--MQKMLPEIDQNKDRMLEILEGKGLSFLFPLL----------KLEKELLKQIKLDPSPQTIYKWIKDNI  225 (364)
T ss_dssp             HHHHHHHTCC--SGGGSCGGGCSHHHHHHHHHHHTCGGGCHHH----------HHHHHHHHHHHHCCCHHHHHHHHHHHS
T ss_pred             HHHHHHcCCC--HHHhCCccccchhHHHHHHHhCCCcccCCHH----------HHHHHHHHHHHcCCChHHHHHHHHHhC
Confidence            9999999998  9999999999999999999999999998743          899999999999999999999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHhh--hhc-cc--c------hhhHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHh
Q 016860          252 KDAKLPDIEVVRILWDILMDAVQ--WSG-KN--Q------QQNANAALRQVKTWAQLLNTFCTNA-KLELELMYKVQMQC  319 (381)
Q Consensus       252 ~~~n~s~~evi~~l~~alm~~v~--~s~-k~--~------~~~~~~~~~~lk~~~pLL~~f~~~~-~~Ql~lL~AlQ~~c  319 (381)
                      .++++++++||+++|+|||+++.  ++. ++  +      ........+.|++|+|+|++|+++. +.|+++|+|+|.+|
T Consensus       226 ~~~~~~~~~fir~L~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~  305 (364)
T 3l6a_A          226 SPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHC  305 (364)
T ss_dssp             CHHHHTCHHHHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CcccCCCHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999984  321 00  0      0111244578999999999999987 56999999999999


Q ss_pred             ccchHHHhHHHHHHHHhhhccccchhhHhhhhhcCCC-cchhHHHHHhHHHHHHHHhhc
Q 016860          320 YEDAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTN-PKGRQTFVKALEPFVKWLEEA  377 (381)
Q Consensus       320 ~e~~~~~k~f~~Il~~LYd~DVVsEeaIlkW~~~~~~-~~Gk~~~lk~~~~Fv~WLeEA  377 (381)
                      ++.......++.|++.|||.|||+||+|++||++.++ ..||++++++++|||+||+||
T Consensus       306 ~~~~~~~~~l~~il~~LYd~DileEe~il~W~~~~~~~~~~k~~~~~~~~~Fi~WL~eA  364 (364)
T 3l6a_A          306 YNSNFPKGMLLRFFVHFYDMEIIEEEAFLAWKEDITQEFPGKGKALFQVNQWLTWLETA  364 (364)
T ss_dssp             HHTTCCTTHHHHHHHHHHHTTSSCHHHHHHHHHCCCCSSTTHHHHHHHHHHHHHHHHHC
T ss_pred             HhccccHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhcC
Confidence            9632223467889999999999999999999998754 358999999999999999997

PyMOL of 3l6a

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14	Back alignment and structure

>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0	Back alignment and structure

>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14	Back alignment and structure

>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}	Back alignment and structure

>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}	Back alignment and structure

>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}	Back alignment and structure

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*	Back alignment and structure

>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A	Back alignment and structure

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		381
d1paqa_		161	a.118.1.14 (A:) Translation initiation factor eIF-	3e-27
d1ug3a2		127	a.118.1.14 (A:1438-1564) Eukaryotic initiation fac	6e-23

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (259), Expect = 3e-27
 Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 3/158 (1%)

Query: 224 KDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQQN 283
           K+  +T+   +    ++   +  +        +   EV       L+  V      Q   
Sbjct: 4   KEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLG 63

Query: 284 ANAALRQV-KTWAQLLNTFCTNAKLELELMYKVQMQCYED--AKLMKLFPEIVRSLYDQD 340
              A+ +V   W  L      + +  ++LM  +  +  E    K   +    + SLYD D
Sbjct: 64  PKDAVVKVFNQWGLLFKRQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDND 123

Query: 341 VLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEAE 378
           ++ ED I  W+   +         K    +V+WL+ A+
Sbjct: 124 IIEEDVIYKWWDNVSTDPRYDEVKKLTVKWVEWLQNAD 161

PyMOL of d1paqa_

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 127	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		381
d1paqa_		161	Translation initiation factor eIF-2b epsilon {Bake	100.0
d1ug3a2		127	Eukaryotic initiation factor eIF4G {Human (Homo sa	99.91
d1ug3a1		193	Eukaryotic initiation factor eIF4G {Human (Homo sa	99.13
d1h2vc3		310	CBP80, 80KDa nuclear cap-binding protein {Human (H	97.26

>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b epsilon {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Translation initiation factor eIF-2b epsilon
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-35  Score=259.01  Aligned_cols=158  Identities=18%  Similarity=0.233  Sum_probs=143.5

Q ss_pred             hHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhhhhcccch-hhHHHHHHHHHHHHHHHH
Q 016860          221 VKLKDMKSTLTTQIAEETEMSEVIESVKQRVKDAKLPDIEVVRILWDILMDAVQWSGKNQQ-QNANAALRQVKTWAQLLN  299 (381)
Q Consensus       221 ~~~~El~~~L~~~l~e~~~~~~ii~eIk~~~~~~n~s~~evi~~l~~alm~~v~~s~k~~~-~~~~~~~~~lk~~~pLL~  299 (381)
                      .|++|+.++|.|+++++++++++++|||++|+++|+|++||+++++.|+|+.+.+..+++. .......+.|++|+|+|+
T Consensus         1 eF~~Ev~~sl~r~~ee~~~~dn~iLElnslr~a~N~~~~dv~~av~~All~~i~~~~~~~~~~~~~~~~~~l~k~~~ll~   80 (161)
T d1paqa_           1 DFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLFK   80 (161)
T ss_dssp             CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGGG
T ss_pred             ChHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence            3788999999999999999999999999999999999999999999999998865433222 233467789999999999


Q ss_pred             HHhcChHHHHHHHHHHHHHhcc--chHHHhHHHHHHHHhhhccccchhhHhhhhhcCCCcchhHHHHHhHHHHHHHHhhc
Q 016860          300 TFCTNAKLELELMYKVQMQCYE--DAKLMKLFPEIVRSLYDQDVLAEDTILYWFRKGTNPKGRQTFVKALEPFVKWLEEA  377 (381)
Q Consensus       300 ~f~~~~~~Ql~lL~AlQ~~c~e--~~~~~k~f~~Il~~LYd~DVVsEeaIlkW~~~~~~~~Gk~~~lk~~~~Fv~WLeEA  377 (381)
                      +|+++.+.|+++|+++|.+|++  +|+++++|+.|++.|||.|||+||+|++||+++++..|+++++++++|||+||++|
T Consensus        81 ~~~~~~~~q~~~L~~lq~~c~~~~~~~~~~~~~~il~~lY~~dii~Ed~i~~W~~~~~~~~~~~~~~~~~~~fv~WL~~a  160 (161)
T d1paqa_          81 RQAFDEEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDIIEEDVIYKWWDNVSTDPRYDEVKKLTVKWVEWLQNA  160 (161)
T ss_dssp             GTCCSHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSCHHHHHHHHHTCCCCGGGHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCcHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHhhchhcHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999985  57888999999999999999999999999999888788899999999999999999


Q ss_pred             c
Q 016860          378 E  378 (381)
Q Consensus       378 E  378 (381)
                      |
T Consensus       161 e  161 (161)
T d1paqa_         161 D  161 (161)
T ss_dssp             C
T ss_pred             C
Confidence            7

PyMOL of d1paqa_

>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure