BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016861
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QGX|A Chain A, X-Ray Structure Of Yeast Hal2p
pdb|1K9Y|A Chain A, The Papase Hal2p Complexed With Magnesium Ions And
Reaction Products: Amp And Inorganic Phosphate
pdb|1K9Z|A Chain A, The Papase Hal2p Complexed With Zinc Ions
pdb|1KA0|A Chain A, The Papase Hal2p Complexed With A Sodium Ion And The
Reaction Product Amp
pdb|1KA1|A Chain A, The Papase Hal2p Complexed With Calcium And Magnesium Ions
And Reaction Substrate: Pap
Length = 357
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 119/374 (31%), Positives = 185/374 (49%), Gaps = 45/374 (12%)
Query: 8 KELDVAVRVVHMACSLCQRVQQKLVSSSDDGHVKSKDDDSPVTVADWSVQATVSLMLSET 67
+EL VA + V A L +R+Q +++S D + +K+D+SPVT D++ Q + +
Sbjct: 5 RELLVATQAVRKASLLTKRIQSEVISHKDSTTI-TKNDNSPVTTGDYAAQTIIINAIKSN 63
Query: 68 LVENLSIVAEEDVQTLTKADSEGLLAAV-----VNTVN----ECLAEAPKFGLQSPPGAL 118
++ +V EE L+ A G+L + V N + L +F L+S
Sbjct: 64 FPDD-KVVGEESSSGLSDAFVSGILNEIKANDEVYNKNYKKDDFLFTNDQFPLKS----- 117
Query: 119 GTSQILEAISRCSSNGGPAGRYWVLDPVDGTLGFVRGDQYAVALALIEDGKVVLGVLGCP 178
+ + I + GG GR+W LDP+DGT GF+RG+Q+AV LALI DG V LG +GCP
Sbjct: 118 -LEDVRQIIDFGNYEGGRKGRFWCLDPIDGTKGFLRGEQFAVCLALIVDGVVQLGCIGCP 176
Query: 179 NYPLKKELLNYPQNYNQXXXXXXXXXXXXWEKGCVMYARRDGGGAWMQPLIHGDRMLEWP 238
N L + + G + A R G GA+ P +
Sbjct: 177 NLVLSSYGAQDLKGHESF--------------GYIFRAVR-GLGAFYSPSSDAE------ 215
Query: 239 NSATQIWVSPIVDPALATVCEPVERANSNHSFTSGLAETVGLRTQPMRVHSMVKYAAIAR 298
S T+I V + D E VE+ +S+H + + + + ++ + + S KY +A
Sbjct: 216 -SWTKIHVRHLKDTKDMITLEGVEKGHSSHDEQTAIKNKLNI-SKSLHLDSQAKYCLLAL 273
Query: 299 GDAEIFMKF-ARAGYKEKIWDHAAGVIIIEEAGGVVTDA-GGRPLDFSRGVFLENLDRGI 356
G A+++++ + Y+EKIWDHAAG +I+ EAGG+ TDA PLDF G L +G+
Sbjct: 274 GLADVYLRLPIKLSYQEKIWDHAAGNVIVHEAGGIHTDAMEDVPLDFGNGRTLAT--KGV 331
Query: 357 IACSNAI-LHEKIV 369
IA S LH+ +V
Sbjct: 332 IASSGPRELHDLVV 345
>pdb|2P3N|A Chain A, Thermotoga Maritima Impase Tm1415
pdb|2P3N|B Chain B, Thermotoga Maritima Impase Tm1415
pdb|2P3N|C Chain C, Thermotoga Maritima Impase Tm1415
pdb|2P3N|D Chain D, Thermotoga Maritima Impase Tm1415
pdb|2P3V|A Chain A, Thermotoga Maritima Impase Tm1415
pdb|2P3V|B Chain B, Thermotoga Maritima Impase Tm1415
pdb|2P3V|C Chain C, Thermotoga Maritima Impase Tm1415
pdb|2P3V|D Chain D, Thermotoga Maritima Impase Tm1415
Length = 256
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 59/217 (27%)
Query: 139 RYWVLDPVDGTLGFVRG-DQYAVALALIEDGKVVLGVLGCPNYPLKKELLNYPQNYNQXX 197
R W++DP+DGT+ FV G ++++LA +E+G+V LGV+ P LN
Sbjct: 74 RLWIIDPIDGTINFVHGLPNFSISLAYVENGEVKLGVVHAP-------ALNE-------- 118
Query: 198 XXXXXXXXXXWEKGCVMYARRDGGGAWMQPLIHGDRMLEWPNSATQIWVSPIVDPALATV 257
+YA +G GA+ +G+R+ N A++
Sbjct: 119 ---------------TLYA-EEGSGAFF----NGERIRVSEN---------------ASL 143
Query: 258 CEPVERANSNHSFTSGLAETVGLRTQPMRV--HSMVKYAAIARGDAEIFMKFARAGYKEK 315
E V S FT E + RT+ +R+ + + A + G + F+ ++
Sbjct: 144 EECVGSTGSYVDFTGKFIERMEKRTRRIRILGSAALNAAYVGAGRVDFFVT-----WRIN 198
Query: 316 IWDHAAGVIIIEEAGGVVTDAGGRPLD-FSRGVFLEN 351
WD AAG+II++EAGG+VTD G+ + FS+ N
Sbjct: 199 PWDIAAGLIIVKEAGGMVTDFSGKEANAFSKNFIFSN 235
>pdb|2CZH|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZH|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Phosphate Ion (Orthorhombic Form)
pdb|2CZI|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) With Calcium And Phosphate Ions
pdb|2CZK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Trigonal Form)
pdb|2DDK|A Chain A, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Orthorhombic Form)
pdb|2DDK|B Chain B, Crystal Structure Of Human Myo-Inositol Monophosphatase 2
(Impa2) (Orthorhombic Form)
Length = 299
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 115/310 (37%), Gaps = 65/310 (20%)
Query: 42 SKDDDSPVTVADWS--VQATVSLMLSETLVENLSIVAEEDVQTLTKADSEGLLAAVVNTV 99
S +D + + W QA V L L + ++ E+ V T T A L+ + V
Sbjct: 15 SGEDQAALAAGPWEECFQAAVQLALRAGQIIRKALTEEKRVSTKTSAAD--LVTETDHLV 72
Query: 100 NECLAEAPKFGLQSPPGALGTSQILEAISRCSSNGGPAGRYWVLDPVDGTLGFV-RGDQY 158
+ + + + P + + ++C P W++DP+DGT FV R
Sbjct: 73 EDLIIS--ELRERFPSHRFIAEEAAASGAKCVLTHSPT---WIIDPIDGTCNFVHRFPTV 127
Query: 159 AVALALIEDGKVVLGVLGCPNYPLKKELLNYPQNYNQXXXXXXXXXXXXWEKGCVMYARR 218
AV++ ++ GV+ Y +E L Y R
Sbjct: 128 AVSIGFAVRQELEFGVI----YHCTEERL---------------------------YTGR 156
Query: 219 DGGGAW---MQPLIHGDRMLEWPNSATQIWVSPIVDPALATVCEPVERANSNHSFTSGLA 275
G GA+ + + G+ L T+I P DPA + F S +
Sbjct: 157 RGRGAFCNGQRLRVSGETDLSKALVLTEI--GPKRDPATLKL------------FLSNME 202
Query: 276 ETVGLRTQPMRV--HSMVKYAAIARGDAEIFMKFARAGYKEKIWDHAAGVIIIEEAGGVV 333
+ + +RV S + +A G A+ + +F WD AA +II EAGG+V
Sbjct: 203 RLLHAKAHGVRVIGSSTLALCHLASGAADAYYQFGL-----HCWDLAAATVIIREAGGIV 257
Query: 334 TDAGGRPLDF 343
D G PLD
Sbjct: 258 IDTSGGPLDL 267
>pdb|2FVZ|A Chain A, Human Inositol Monophosphosphatase 2
pdb|2FVZ|B Chain B, Human Inositol Monophosphosphatase 2
pdb|2FVZ|C Chain C, Human Inositol Monophosphosphatase 2
pdb|2FVZ|D Chain D, Human Inositol Monophosphosphatase 2
Length = 273
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 84/222 (37%), Gaps = 59/222 (26%)
Query: 128 SRCSSNGGPAGRYWVLDPVDGTLGFV-RGDQYAVALALIEDGKVVLGVLGCPNYPLKKEL 186
++C P W++DP+DGT FV R AV++ ++ GV+ Y +E
Sbjct: 73 AKCVLTHSPT---WIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVI----YHCTEER 125
Query: 187 LNYPQNYNQXXXXXXXXXXXXWEKGCVMYARRDGGGAW---MQPLIHGDRMLEWPNSATQ 243
L Y R G GA+ + + G+ L T+
Sbjct: 126 L---------------------------YTGRRGRGAFCNGQRLRVSGETDLSKALVLTE 158
Query: 244 IWVSPIVDPALATVCEPVERANSNHSFTSGLAETVGLRTQPMRV--HSMVKYAAIARGDA 301
I P DPA + F S + + + +RV S + +A G A
Sbjct: 159 I--GPKRDPATLKL------------FLSNMERLLHAKAHGVRVIGSSTLALCHLASGAA 204
Query: 302 EIFMKFARAGYKEKIWDHAAGVIIIEEAGGVVTDAGGRPLDF 343
+ + +F WD AA +II EAGG+V D G PLD
Sbjct: 205 DAYYQFGL-----HCWDLAAATVIIREAGGIVIDTSGGPLDL 241
>pdb|2HHM|A Chain A, Structure Of Inositol Monophosphatase, The Putative Target
Of Lithium Therapy
pdb|2HHM|B Chain B, Structure Of Inositol Monophosphatase, The Putative Target
Of Lithium Therapy
pdb|1AWB|A Chain A, Human Myo-Inositol Monophosphatase In Complex With D-
Inositol-1-Phosphate And Calcium
pdb|1AWB|B Chain B, Human Myo-Inositol Monophosphatase In Complex With D-
Inositol-1-Phosphate And Calcium
Length = 276
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 86/238 (36%), Gaps = 64/238 (26%)
Query: 141 WVLDPVDGTLGFV-RGDQYAVALALIEDGKVVLGVLGCPNYPLKKELLNYPQNYNQXXXX 199
W++DP+DGT FV R AV++ + K+ GV+
Sbjct: 86 WIIDPIDGTTNFVHRFPFVAVSIGFAVNKKIEFGVV------------------------ 121
Query: 200 XXXXXXXXWEKGCV---MYARRDGGGAWMQPLIHGDRMLEWPNSATQIWVSPIVDPALAT 256
CV MY R G GA+ + ++ VS D +
Sbjct: 122 ----------YSCVEGKMYTARKGKGAFC--------------NGQKLQVSQQEDITKSL 157
Query: 257 VCEPVERANSNHSFTSGLAETVGLRTQPMRVHSMVKYAAIARGDAEIFMKFARAGYKEKI 316
+ + + + + L+ L P VH + A + A A Y+ I
Sbjct: 158 LVTELGSSRTPETVRMVLSNMEKLFCIP--VHGIRSVGTAAVNMCLVATGGADAYYEMGI 215
Query: 317 --WDHAAGVIIIEEAGGVVTDAGGRPLDFSRGVFLENLDRGIIACSNAILHEKIVDAV 372
WD A II+ EAGGV+ D G P D + R +IA +N IL E+I +
Sbjct: 216 HCWDVAGAGIIVTEAGGVLMDVTGGPFDL--------MSRRVIAANNRILAERIAKEI 265
>pdb|1IMA|A Chain A, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMA|B Chain B, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMB|A Chain A, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMB|B Chain B, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMC|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMC|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMD|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-metal Ion Catalysis
pdb|1IMD|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-metal Ion Catalysis
pdb|1IME|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IME|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMF|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|4AS4|A Chain A, Structure Of Human Inositol Monophosphatase 1
pdb|4AS4|B Chain B, Structure Of Human Inositol Monophosphatase 1
Length = 277
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 86/238 (36%), Gaps = 64/238 (26%)
Query: 141 WVLDPVDGTLGFV-RGDQYAVALALIEDGKVVLGVLGCPNYPLKKELLNYPQNYNQXXXX 199
W++DP+DGT FV R AV++ + K+ GV+
Sbjct: 87 WIIDPIDGTTNFVHRFPFVAVSIGFAVNKKIEFGVV------------------------ 122
Query: 200 XXXXXXXXWEKGCV---MYARRDGGGAWMQPLIHGDRMLEWPNSATQIWVSPIVDPALAT 256
CV MY R G GA+ + ++ VS D +
Sbjct: 123 ----------YSCVEGKMYTARKGKGAFC--------------NGQKLQVSQQEDITKSL 158
Query: 257 VCEPVERANSNHSFTSGLAETVGLRTQPMRVHSMVKYAAIARGDAEIFMKFARAGYKEKI 316
+ + + + + L+ L P VH + A + A A Y+ I
Sbjct: 159 LVTELGSSRTPETVRMVLSNMEKLFCIP--VHGIRSVGTAAVNMCLVATGGADAYYEMGI 216
Query: 317 --WDHAAGVIIIEEAGGVVTDAGGRPLDFSRGVFLENLDRGIIACSNAILHEKIVDAV 372
WD A II+ EAGGV+ D G P D + R +IA +N IL E+I +
Sbjct: 217 HCWDVAGAGIIVTEAGGVLMDVTGGPFDL--------MSRRVIAANNRILAERIAKEI 266
>pdb|2BJI|A Chain A, High Resolution Structure Of Myo-Inositol Monophosphatase,
The Target Of Lithium Therapy
pdb|2BJI|B Chain B, High Resolution Structure Of Myo-Inositol Monophosphatase,
The Target Of Lithium Therapy
Length = 277
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 89/246 (36%), Gaps = 80/246 (32%)
Query: 141 WVLDPVDGTLGFVRGDQY-AVALALIEDGKVVLG-VLGCPNYPLKKELLNYPQNYNQXXX 198
W++DP+DGT FV G + AV++ + + K+ G V C L+ +
Sbjct: 87 WIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYSC----LEDK------------- 129
Query: 199 XXXXXXXXXWEKGCVMYARRDGGGAW----------MQPLIHGDRMLEWPNSATQIWVSP 248
MY R G GA+ + + + E +S T V
Sbjct: 130 ---------------MYTGRKGKGAFCNGQKLQVSHQEDITKSLLVTELGSSRTPETVRI 174
Query: 249 IVDPALATVCEPVERANSNHSFTSGLAETVGLRTQPMRVHSMVKYAAIARGDAEIFMKFA 308
I+ +C P+ G+R +M AA A A
Sbjct: 175 ILSNIERLLCLPIH----------------GIRGVGTAALNMCLVAAGA----------A 208
Query: 309 RAGYKEKI--WDHAAGVIIIEEAGGVVTDAGGRPLDFSRGVFLENLDRGIIACSNAILHE 366
A Y+ I WD A II+ EAGGV+ D G P D + R +IA SN L E
Sbjct: 209 DAYYEMGIHCWDVAGAGIIVTEAGGVLLDVTGGPFDL--------MSRRVIASSNKTLAE 260
Query: 367 KIVDAV 372
+I +
Sbjct: 261 RIAKEI 266
>pdb|3T0J|A Chain A, Crystal Structure Of Inositol Monophosphatase - Ii From
Staphylococcus Aureus Mssa476
pdb|3T0J|B Chain B, Crystal Structure Of Inositol Monophosphatase - Ii From
Staphylococcus Aureus Mssa476
pdb|3T0J|C Chain C, Crystal Structure Of Inositol Monophosphatase - Ii From
Staphylococcus Aureus Mssa476
pdb|3T0J|D Chain D, Crystal Structure Of Inositol Monophosphatase - Ii From
Staphylococcus Aureus Mssa476
Length = 283
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 63/214 (29%)
Query: 138 GRYWVLDPVDGTLGFV-RGDQYAVALALIEDGKVVLGVLGCPNYPLKKELLNYPQNYNQX 196
G WV+DP+DGTL FV + + +A+++ + DGK G + Y + +
Sbjct: 85 GTVWVVDPIDGTLNFVHQQENFAISIGIYIDGKPYAGFV----YDVMAD----------- 129
Query: 197 XXXXXXXXXXXWEKGCVMYARRDGGGAWM--QPLIHGDRMLEWPN-SATQIWVSP--IVD 251
V+Y + G GA+ QPL + L N + I ++P +
Sbjct: 130 ----------------VLYHAKVGEGAYRGSQPL----KPLNDSNLRQSIIGINPNWLTK 169
Query: 252 PALATVC-EPVERANSNHSFTSGLAETVGLRTQPMRVHSMVKYAAIARGDAEIFMKFARA 310
P L + E V + S ++ S E V ++A G+ E +M
Sbjct: 170 PILGEIFKEIVNDSRSARAYGSAALEIV----------------SVATGNLEAYMT---- 209
Query: 311 GYKEKIWDHAAGVIIIEEAGGVVTDAGGRPLDFS 344
+ + WD A G++I+ E G ++ G PL S
Sbjct: 210 -PRLQPWDFAGGLVILYEVNGQASNLLGEPLTIS 242
>pdb|1LBV|A Chain A, Crystal Structure Of Apo-Form (P21) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBV|B Chain B, Crystal Structure Of Apo-Form (P21) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBW|A Chain A, Crystal Structure Of Apo-Form (P32) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBW|B Chain B, Crystal Structure Of Apo-Form (P32) Of Dual Activity
FbpaseIMPASE (AF2372) FROM ARCHAEOGLOBUS FULGIDUS
pdb|1LBX|A Chain A, Crystal Structure Of A Ternary Complex Of Dual Activity
Fbpase/impase (af2372) From Archaeoglobus Fulgidus With
Calcium Ions And D-myo-inositol-1-phosphate
pdb|1LBX|B Chain B, Crystal Structure Of A Ternary Complex Of Dual Activity
Fbpase/impase (af2372) From Archaeoglobus Fulgidus With
Calcium Ions And D-myo-inositol-1-phosphate
pdb|1LBY|A Chain A, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Manganese Ions, Fructose-6-phosphate,
And Phosphate Ion
pdb|1LBY|B Chain B, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Manganese Ions, Fructose-6-phosphate,
And Phosphate Ion
pdb|1LBZ|A Chain A, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Calcium Ions And Fructose-1,6
Bisphosphate
pdb|1LBZ|B Chain B, Crystal Structure Of A Complex (p32 Crystal Form) Of Dual
Activity Fbpase/impase (af2372) From Archaeoglobus
Fulgidus With 3 Calcium Ions And Fructose-1,6
Bisphosphate
Length = 252
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 296 IARGDAEIFMKFARAGYKEKIWDHAAGVIIIEEAGGVVTDAGGRPLDFSRGVFLENLDRG 355
A G + F+ R G +I+D AAGV I E+AGG VT+ G L + E L+
Sbjct: 179 FADGSFDCFLDI-RPGKMLRIYDAAAGVFIAEKAGGKVTELDGESLGNKKFDMQERLN-- 235
Query: 356 IIACSNAILHEKIVDAV 372
I +N LH K+++ +
Sbjct: 236 -IVAANEKLHPKLLELI 251
>pdb|3B8B|A Chain A, Crystal Structure Of Cysq From Bacteroides
Thetaiotaomicron, A Bacterial Member Of The Inositol
Monophosphatase Family
Length = 292
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 141 WVLDPVDGTLGFV-RGDQYAVALALIEDGKVVLGVLGCPNYPLKKEL 186
W++DP+DGT F+ R ++ V +AL+++ V GV+ P+KKEL
Sbjct: 102 WIVDPLDGTKEFIKRNGEFTVNIALVQNAVPVXGVIYV---PVKKEL 145
>pdb|3LUZ|A Chain A, Crystal Structure Of Extragenic Suppressor Protein Suhb
From Bartonella Henselae, Via Combined Iodide Sad
Molecular Replacement
pdb|3LUZ|B Chain B, Crystal Structure Of Extragenic Suppressor Protein Suhb
From Bartonella Henselae, Via Combined Iodide Sad
Molecular Replacement
pdb|3LV0|A Chain A, Crystal Structure Of Extragenic Suppressor Protein Suhb
From Bartonella Henselae, Native
pdb|3LV0|B Chain B, Crystal Structure Of Extragenic Suppressor Protein Suhb
From Bartonella Henselae, Native
Length = 267
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 55 SVQATVSLMLSETLVENLSIVAEEDVQTLTKADSEGLLAAVVNTVNECLAEAPKFGLQSP 114
+++A SL+ V+NL + + +++AD + A NE PKFG
Sbjct: 18 AMKAGRSLVRDYGEVQNLQVSLKGPADYVSQADRK----AEKIIFNELSKARPKFGFL-- 71
Query: 115 PGALGTSQILEAISRCSSNGGPAGRYWVLDPVDGTLGFVRG-DQYAVALALIEDGKVVLG 173
+ E I S + +++DP+DGT F+ G +AV++AL GK+V G
Sbjct: 72 -----MEESEEIIGEDSQH------RFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAG 120
Query: 174 VLGCP 178
V+ P
Sbjct: 121 VIYNP 125
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 315 KIWDHAAGVIIIEEAGGVVTDAGG 338
+IWD AAG++++ EAGG VTD G
Sbjct: 215 QIWDMAAGILMVREAGGFVTDKEG 238
>pdb|4AS5|A Chain A, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|B Chain B, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|C Chain C, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|D Chain D, Structure Of Mouse Inositol Monophosphatase 1
Length = 277
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 86/238 (36%), Gaps = 64/238 (26%)
Query: 141 WVLDPVDGTLGFV-RGDQYAVALALIEDGKVVLGVLGCPNYPLKKELLNYPQNYNQXXXX 199
WV+DP+DGT FV R AV++ + + ++ G++
Sbjct: 87 WVIDPIDGTTNFVHRFPFVAVSIGFLVNKEMEFGIV------------------------ 122
Query: 200 XXXXXXXXWEKGCV---MYARRDGGGAWMQPLIHGDRMLEWPNSATQIWVSPIVDPALAT 256
CV MY R G GA+ + ++ VS D +
Sbjct: 123 ----------YSCVEDKMYTGRKGKGAFC--------------NGQKLQVSQQEDITKSL 158
Query: 257 VCEPVERANSNHSFTSGLAETVGLRTQPMRVHSMVKYAAIARGDAEIFMKFARAGYKEKI 316
+ + + + L+ L + P +H + A + A A Y+ I
Sbjct: 159 LVTELGSSRKPETLRIVLSNMEKLCSIP--IHGIRSVGTAAVNMCLVATGGADAYYEMGI 216
Query: 317 --WDHAAGVIIIEEAGGVVTDAGGRPLDFSRGVFLENLDRGIIACSNAILHEKIVDAV 372
WD A II+ EAGGV+ D G P D + R IIA ++ L ++I +
Sbjct: 217 HCWDMAGAGIIVTEAGGVLMDVTGGPFDL--------MSRRIIAANSITLAKRIAKEI 266
>pdb|3RYD|A Chain A, Crystal Strucutre Of Ca Bound Impase Family Protein From
Staphylococcus Aureus
pdb|3RYD|C Chain C, Crystal Strucutre Of Ca Bound Impase Family Protein From
Staphylococcus Aureus
Length = 273
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 141 WVLDPVDGTLGFVRGDQ-YAVALALIEDGKVVLGVLGCPNYPLKK 184
W++DP+DGT V+ + Y + LA +GK +L + +YP KK
Sbjct: 93 WIMDPIDGTANLVKQQEDYCIILAYFYEGKPMLSYVY--DYPHKK 135
>pdb|3QMF|A Chain A, Crystal Strucuture Of An Inositol Monophosphatase Family
Protein (Sas2203) From Staphylococcus Aureus Mssa476
pdb|3QMF|B Chain B, Crystal Strucuture Of An Inositol Monophosphatase Family
Protein (Sas2203) From Staphylococcus Aureus Mssa476
Length = 273
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 141 WVLDPVDGTLGFVRGDQ-YAVALALIEDGKVVLGVLGCPNYPLKK 184
W++DP+DGT V+ + Y + LA +GK +L + +YP KK
Sbjct: 93 WIMDPIDGTANLVKQQEDYCIILAYFYEGKPMLSYVY--DYPHKK 135
>pdb|1JP4|A Chain A, Crystal Structure Of An Enzyme Displaying Both Inositol-
Polyphosphate 1-Phosphatase And 3'-Phosphoadenosine-5'-
Phosphate Phosphatase Activities
Length = 308
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 122/356 (34%), Gaps = 96/356 (26%)
Query: 7 AKELDVAVRVVHMACSLCQR---VQQKLVSSSDDGHVKSKDDDSPVTVADWSVQATVSLM 63
A +V +R+V A S+ Q+ + + +++ D G V+ T AD VQ ++
Sbjct: 2 ASSHNVLMRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSS 61
Query: 64 LSETLVENLSIVAEEDVQTLTKADSEGLLAAVVNTVNECLAEAPKFGLQSPPGALGTSQI 123
LS L+I+ EED+ PPG + I
Sbjct: 62 LSRKF-PKLTIIGEEDL---------------------------------PPGEVDQELI 87
Query: 124 LEAISR------CSSNGGPAGR----YWVLDPVDGTLGFVRG--DQYAVALALIEDGKVV 171
+ S C S WV DPVDGT + G D V + + +GK +
Sbjct: 88 EDGQSEEILKQPCPSQYSAIKEEDLVVWV-DPVDGTKEYTEGLLDNVTVLIGIAYEGKAI 146
Query: 172 LGVLGCPNYPLKKELLNYPQNYNQXXXXXXXXXXXXWEKGCVMYARRDGGGAWMQPLIHG 231
G++ P YN W G + G GA+ G
Sbjct: 147 AGIINQPY-------------YNYQAGPDAVLGRTIW--GVL------GLGAF------G 179
Query: 232 DRMLEWPNSATQIWVSPIVDPALATVCEPVERANSNHSFTSGLAETVGLRTQPMRVHSMV 291
++ E P I + L T C + N ++ G A
Sbjct: 180 FQLKEAPAGKHIITTTRSHSNKLVTDC--IAAMNPDNVLRVGGAGN-------------- 223
Query: 292 KYAAIARGDAEIFMKFARAGYKEKIWDHAAGVIIIEEAGGVVTDAGGRPLDFSRGV 347
K + G A ++ FA G K+ WD A +I+ GG +TD G PL + + V
Sbjct: 224 KIIQLIEGKASAYV-FASPGCKK--WDTCAPEVILHAVGGKLTDIHGNPLQYDKEV 276
>pdb|2QFL|A Chain A, Structure Of Suhb: Inositol Monophosphatase And Extragenic
Suppressor From E. Coli
Length = 267
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 141 WVLDPVDGTLGFV-RGDQYAVALALIEDGKVVLGVLGCPNY-PLKKELL 187
WV+DP+DGT F+ R +AV++A+ G+ + V+ Y P++ EL
Sbjct: 81 WVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVV----YDPMRNELF 125
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 317 WDHAAGVIIIEEAGGVVTDAGG 338
WD AAG +++ EAGG+V+D G
Sbjct: 211 WDFAAGELLVREAGGIVSDFTG 232
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 31/153 (20%)
Query: 21 CSLCQRVQQKLVSSSDDGHVKSKDDDSPVTVADWSVQATVSLMLSETLVENLSIVAEEDV 80
CS C+ Q+ L DD + +K+D P S+ +V+ + +++ +
Sbjct: 274 CS-CEHCQKGL---KDDLFLAAKEDPKP----------------SQEVVKEMIQFSKDTL 313
Query: 81 QTLTKADSEGLLAAVVNTVNECLAEAPKFGLQSPPGALGTSQILEAISRCSS-----NGG 135
+ + KA SEGL VV ECL + Q P A +L +S S
Sbjct: 314 EKIDKARSEGLYHEVVKLCRECLEK------QEPVFADTNLYVLRLLSIASEVLSYLQAY 367
Query: 136 PAGRYWVLDPVDGTLGFVRGDQYAVALALIEDG 168
++ VDG + + + +A++ G
Sbjct: 368 EEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400
>pdb|2Q74|A Chain A, Mycobacterium Tuberculosis Suhb
pdb|2Q74|B Chain B, Mycobacterium Tuberculosis Suhb
pdb|2Q74|C Chain C, Mycobacterium Tuberculosis Suhb
Length = 299
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Query: 141 WVLDPVDGTLGFVRG-DQYAVAL 162
WVLDP+DGT+ FV G YAV++
Sbjct: 101 WVLDPIDGTVNFVYGIPAYAVSI 123
>pdb|1VDW|A Chain A, A Hypothetical Protein Ph1897 From Pyrococcus Horikoshii
With Similarities For Inositol-1 Monophosphatase
pdb|1VDW|B Chain B, A Hypothetical Protein Ph1897 From Pyrococcus Horikoshii
With Similarities For Inositol-1 Monophosphatase
Length = 254
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 318 DHAAGVIIIEEAGGVVTDAGGRPLDFSRGVFLENLDRGIIACSNAILHEKIVDAV 372
D AAGV+I EAG +V D G+ ++ + F IIA +N L E I+ ++
Sbjct: 201 DIAAGVVIAREAGAIVKDLDGKDVEIT---FSATEKVNIIAANNEELLETILRSI 252
>pdb|2WEF|A Chain A, Human 3'(2'), 5'-Bisphosphate Nucleotidase 1 (Bpnt1) In
Complex With Amp, Po4 And Magnesium
Length = 311
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 141 WVLDPVDGTLGFVRG--DQYAVALALIEDGKVVLGVLGCPNY 180
WV DP+DGT + G D V + + +GK + GV+ P Y
Sbjct: 111 WV-DPLDGTKEYTEGLLDNVTVLIGIAYEGKAIAGVINQPYY 151
>pdb|2PCR|A Chain A, Crystal Structure Of Myo-Inositol-1(Or 4)-Monophosphatase
(Aq_1983) From Aquifex Aeolicus Vf5
pdb|2PCR|B Chain B, Crystal Structure Of Myo-Inositol-1(Or 4)-Monophosphatase
(Aq_1983) From Aquifex Aeolicus Vf5
pdb|2PCR|C Chain C, Crystal Structure Of Myo-Inositol-1(Or 4)-Monophosphatase
(Aq_1983) From Aquifex Aeolicus Vf5
pdb|2PCR|D Chain D, Crystal Structure Of Myo-Inositol-1(Or 4)-Monophosphatase
(Aq_1983) From Aquifex Aeolicus Vf5
Length = 264
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 312 YKEKIWDHAAGVIIIEEAGGVVTDAG 337
++ K WD AG++I++EAGGV T G
Sbjct: 208 FEXKPWDITAGLVILKEAGGVYTLVG 233
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 141 WVLDPVDGTLGFVRGDQ-YAVALALIEDGKVVLGVLGCPNY 180
W +DP+DGT ++ G +AV++ L++ + ++G + P +
Sbjct: 83 WFIDPLDGTKNYINGFPIFAVSVGLVKGEEPIVGAVYLPYF 123
>pdb|1XI6|A Chain A, Extragenic Suppressor From Pyrococcus Furiosus
Pfu-1862794- 001
Length = 262
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 318 DHAAGVIIIEEAGGVVTDAGGRPLDFS 344
D AAG II +EAG ++ D+ G+ +D S
Sbjct: 210 DIAAGTIIAKEAGALIKDSAGKDIDIS 236
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 60 VSLMLSETLVENLSIVAEEDVQTLTKADSEGLLAAVVNTVNECLAEAPKFGLQSPPGALG 119
V + + + + L +VA E V + + G L N+ AE G+Q PP
Sbjct: 115 VGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDA 174
Query: 120 TSQILEAISRCSSNGGPAGRYWV 142
+++LE SR + N A W+
Sbjct: 175 RARLLENFSRKTLNDDVAVGDWI 197
>pdb|1KON|A Chain A, Crystal Structure Of E.Coli Yebc
Length = 249
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 121 SQILEAISRCSSNGGPAGRYWVLDPVDGTLGFVRGDQYAVALALIEDG 168
+++ A S+C N G G L G + F +GD+ + A +E G
Sbjct: 114 AEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAG 161
>pdb|2H8G|A Chain A, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2H8G|B Chain B, 5'-Methylthioadenosine Nucleosidase From Arabidopsis
Thaliana
pdb|2QSU|A Chain A, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QSU|B Chain B, Structure Of Arabidopsis Thaliana 5'-Methylthioadenosine
Nucleosidase In Apo Form
pdb|2QTG|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTG|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With 5'-
Methylthiotubercidin
pdb|2QTT|A Chain A, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|2QTT|B Chain B, Crystal Structure Of Arabidopsis Thaliana 5'-
Methylthioadenosine Nucleosidase In Complex With
Formycin A
pdb|3LGS|A Chain A, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|B Chain B, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|C Chain C, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
pdb|3LGS|D Chain D, A. Thaliana Mta Nucleosidase In Complex With
S-Adenosylhomocysteine
Length = 267
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 8 KELDVAVRVVHMACSLCQRVQQKLVSSSDDGHVKSKDDDSPVTVADWSVQATVSLMLSET 67
KEL++ + + SL Q + + ++D +K + + VAD V L
Sbjct: 166 KELNLKIGRLSTGDSLDMSTQDETLIIANDATLKDMEGAAVAYVADLLKIPVVFLKAVTD 225
Query: 68 LVENLSIVAEEDVQTLT--KADSEGLLAAVVNTVN 100
LV+ AEE +Q LT A EG V+N +N
Sbjct: 226 LVDGDKPTAEEFLQNLTVVTAALEGTATKVINFIN 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,535,577
Number of Sequences: 62578
Number of extensions: 464950
Number of successful extensions: 1016
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 965
Number of HSP's gapped (non-prelim): 49
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)