BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016862
         (381 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3D2N|A Chain A, Crystal Structure Of Mbnl1 Tandem Zinc Finger 1 And 2
           Domain
          Length = 83

 Score = 31.6 bits (70), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQL 193
            C +F++G+C + D  C+FAH    C +   R     C D   G C R  C + H P  L
Sbjct: 11  VCREFQRGTCSRPDTECKFAHPSKSCQVENGR--VIACFDSLKGRCSRENCKYLHPPPHL 68

Query: 194 R 194
           +
Sbjct: 69  K 69


>pdb|2RPP|A Chain A, Solution Structure Of Tandem Zinc Finger Domain 12 In
           Muscleblind-Like Protein 2
          Length = 89

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQL 193
            C  F++G+C + D  C+FAH    C +   R     C D   G C R  C + H P  L
Sbjct: 19  VCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIA--CFDSLKGRCSRENCKYLHPPTHL 76

Query: 194 RI 195
           + 
Sbjct: 77  KT 78


>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
           With F2f3 Fragment Of Human Cellular Factor Cpsf30,
           Northeast Structural Genomics Targets Or8c And Hr6309a
 pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
           With F2f3 Fragment Of Human Cellular Factor Cpsf30,
           Northeast Structural Genomics Targets Or8c And Hr6309a
          Length = 72

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 14/65 (21%)

Query: 136 TACPDFRKGSCKKGDACEFAH-----GVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTP 190
             C  + +G CKKGD CEF H      + EC+ +            G C  + C F H  
Sbjct: 17  VVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKF---------GECSNKECPFLHID 67

Query: 191 DQLRI 195
            + +I
Sbjct: 68  PESKI 72


>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au-
           Rich Element By The Tandem Zinc Finger Domain Of Tis11d
          Length = 70

 Score = 29.3 bits (64), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 133 YSGTACPDFRK-GSCKKGDACEFAHGVFE---CWLHPARYRTQPCK 174
           Y    C  F + G+CK G+ C+FAHG  E      HP +Y+T+ C+
Sbjct: 4   YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHP-KYKTELCR 48


>pdb|2D9N|A Chain A, Solution Structure Of Ccch Type Zinc-Finger Domain 2 In
           Cleavage And Polyadenylation Specificity Factor
          Length = 77

 Score = 28.1 bits (61), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 14/65 (21%)

Query: 136 TACPDFRKGSCKKGDACEFAH-----GVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTP 190
             C  + +G CKKGD CEF H      + EC+ +            G C  + C F H  
Sbjct: 11  VVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKF---------GECSNKECPFLHID 61

Query: 191 DQLRI 195
            + +I
Sbjct: 62  PESKI 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.467 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,277,093
Number of Sequences: 62578
Number of extensions: 307506
Number of successful extensions: 459
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 10
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)