BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016862
(381 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82199|C3H20_ARATH Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis
thaliana GN=At2g19810 PE=2 SV=1
Length = 359
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 236/385 (61%), Positives = 284/385 (73%), Gaps = 35/385 (9%)
Query: 1 MMLGEAHRP-NPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAAL 59
MM+GE+HR NPT+ +PPWP L +D T +I+ GSP+ + + E A L
Sbjct: 1 MMIGESHRGFNPTVHIPPWP-LSEDLTVSDIY----------GSPDGGS--SMMEALAEL 47
Query: 60 HRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHP 119
RYLPSN+PD DSD D+SG PDSP+DAY+CDHFRMYEFKVR+CARGRSHDWTECPYAHP
Sbjct: 48 QRYLPSNEPDPDSDPDLSG--PDSPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHP 105
Query: 120 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGC 179
GEKARRRDPRK+HYSGTACP+FRKG CK+GDACEF+HGVFECWLHPARYRTQPCKDGG C
Sbjct: 106 GEKARRRDPRKFHYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNC 165
Query: 180 KRRVCFFAHTPDQLRILPQQSPRSASASD--SPSCAKTLPFLSSPESASPPPSPRTESPM 237
+RRVCFFAH+PDQ+R+LP QSP + D SP+ + F SP S SPP SPR +S
Sbjct: 166 RRRVCFFAHSPDQIRVLPNQSPDRVDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDS 225
Query: 238 SHSLSRSLGTSSI-NEMMASFRNLQLGKVK-SLPSSWNIQVGGVGGSPGYGSPRGSMLRP 295
S SL S++ N+++AS RNLQL KVK SL SS+N Q+GG G G+GSPRGS+L P
Sbjct: 226 SCSLLSRSLGSNLGNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGS--GFGSPRGSVLGP 283
Query: 296 GFCSLPSTPTRTPTRPGIGYPDIFNTCWEEE-EEEPVMERVESGRDLRAKMFERLSKENS 354
GF SLP+ TPTRPG F WE EEEP MERVESGR+LRA++FE+LSKEN
Sbjct: 284 GFRSLPT----TPTRPG------FMNIWENGLEEEPAMERVESGRELRAQLFEKLSKENC 333
Query: 355 LERVDPYPTNAVD--PDLGWITELV 377
+ R++P P PD+GW+++LV
Sbjct: 334 MGRIEPDPDQGAGDTPDVGWVSDLV 358
>sp|Q9M0G2|C3H49_ARATH Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis
thaliana GN=At4g29190 PE=2 SV=1
Length = 356
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/386 (59%), Positives = 270/386 (69%), Gaps = 40/386 (10%)
Query: 1 MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALH 60
MM+GE R PT+ +PPWP L ++ T FSP SP+ S L E A L
Sbjct: 1 MMIGETRRTYPTVEIPPWPVL-EELTTSEFFSP------VMNSPDCSML----EALAGLQ 49
Query: 61 RYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPG 120
RYLPSN+PD +S D+ G PDSP+DAYSCDHFRMY+FKVR+CARGRSHDWTECPYAHPG
Sbjct: 50 RYLPSNEPDPESYPDLLG--PDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPG 107
Query: 121 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCK 180
EKARRRDPRKYHYSGTACPDFRKG CKKGD+CEFAHGVFECWLHPARYRTQPCKDGG C
Sbjct: 108 EKARRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCL 167
Query: 181 RRVCFFAHTPDQLRILPQQSPRSASASD--SPSCAKTLPFLSSPESASPPPSPRTE---S 235
R++CFFAH+PDQLR L +SP + D SP A+ SP S SPP SPR + S
Sbjct: 168 RKICFFAHSPDQLRFLHTRSPDRVDSFDVSSPIRARAFQLSISPVSGSPPMSPRADSESS 227
Query: 236 PMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRGSMLRP 295
PM+ SLSRSLG+ SIN+++ SFRNLQ VKS P + + G+GSPRGS+L P
Sbjct: 228 PMTQSLSRSLGSCSINDVVPSFRNLQFNSVKSFPRNNPLF--------GFGSPRGSILGP 279
Query: 296 GFCSLPSTPTRTPTRPGIGYPDIFNTCWEEE-EEEPVMER-VESGRDLRAKMFERLSKEN 353
GF SLP+TPTR G DI WE EEEPVMER VESGR+LR KM E+L KEN
Sbjct: 280 GFQSLPTTPTRP------GNLDI----WEYGLEEEPVMERVVESGRELREKMREKLHKEN 329
Query: 354 SLERV--DPYPTNAVDPDLGWITELV 377
++RV DP PD+GW+++L+
Sbjct: 330 CMDRVAQDPDQNLGEAPDVGWVSDLL 355
>sp|Q9FU27|C3H2_ORYSJ Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp.
japonica GN=Os01g0192000 PE=2 SV=1
Length = 386
Score = 301 bits (770), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 189/412 (45%), Positives = 235/412 (57%), Gaps = 61/412 (14%)
Query: 1 MMLGEAHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIPETYAALH 60
MM+GE VPPW LP + L G E + P AAL
Sbjct: 2 MMMGEG-----VSSVPPWSHLP-------VSGVDVLGGGGGGGDEMT-----PYVIAALR 44
Query: 61 RYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPG 120
YLP+ND + +D + + VDAY+CD FRMYEFKVR+CARGRSHDWTECP+AHPG
Sbjct: 45 DYLPANDVGVGADEEEEAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPG 104
Query: 121 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCK 180
EKARRRDPRKYHYSGTACPDFRKG CK+GDACE+AHGVFECWLHPARYRTQPCKDG C+
Sbjct: 105 EKARRRDPRKYHYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACR 164
Query: 181 RRVCFFAHTPDQLRILPQQSPRSASASDSPSCAKTLPFLSSPESASPPPSPRTESPMSHS 240
RRVCFFAHTPDQLR+LP Q S + SP + SP S T++ MS S
Sbjct: 165 RRVCFFAHTPDQLRVLPAQQSSPRSVASSPLAES---YDGSPLRRQAFESYLTKTIMSSS 221
Query: 241 LSRSL----------------------------GTSS-INEMMASFRNLQLGKVKSLPS- 270
+ +L G S +N+++ASFR L+L KVKS PS
Sbjct: 222 PTSTLMSPPKSPPSESPPLSPDGAAAIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSG 281
Query: 271 SWNIQVGGVGGSPGYGSPRGSMLRPGFCSLPSTP---TRTPTRPGIGYPDIFNTCWEEEE 327
W+ S YGSP+ + G SLP+TP T T T P++
Sbjct: 282 GWSYP----SSSAVYGSPKAAT---GLYSLPTTPLASTATVTTASSFMPNLEPLDLGLIG 334
Query: 328 EEPVMERVESGRDLRAKMFERLSKENSLE-RVDPYPTNAVDPDLGWITELVN 378
+E ++RVESGR LR K+FERLS++ ++ + T V D+ W+++L+N
Sbjct: 335 DEEPVQRVESGRALREKVFERLSRDGAISGDATAFATAGVGLDVDWVSDLIN 386
>sp|Q6L4N4|C3H35_ORYSJ Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa
subsp. japonica GN=Os05g0195200 PE=2 SV=1
Length = 402
Score = 289 bits (739), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 191/427 (44%), Positives = 232/427 (54%), Gaps = 75/427 (17%)
Query: 1 MMLGE-AHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANG--SPEYSNLYHIPETYA 57
MM+GE AH PPW Q ++ SP S G S + YH+ +T
Sbjct: 2 MMMGEGAH-------APPWQQ--------HVASPVSGVEGGGGRESEVVAAPYHLLDT-- 44
Query: 58 ALHRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYA 117
L YLPSN+ D + + + VDAY+CD FRMYEFKVR+CARGRSHDWTECP+A
Sbjct: 45 -LRHYLPSNEAAAAEDEEEA-AAVAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFA 102
Query: 118 HPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGG 177
HPGEKARRRDPR+Y YSGTACPDFRKG CK+GDACEFAHGVFECWLHPARYRTQPCKDG
Sbjct: 103 HPGEKARRRDPRRYCYSGTACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGT 162
Query: 178 GCKRRVCFFAHTPDQLRILPQQSPRSASASDSP--SCAKTLPFLSSPESASPPPSPRTES 235
C+RRVCFFAHTPDQLR+LP P S+SP +SP + S SP
Sbjct: 163 ACRRRVCFFAHTPDQLRVLP---PSQQQGSNSPRGCGGGGAGAAASPLAESYDGSPLRRQ 219
Query: 236 PMSHSLSRSLGTSS--------------------------------------INEMMASF 257
L++S+ +SS +N++ S
Sbjct: 220 AFESYLTKSIMSSSPTSTLVSPPRSPPSESPPLSPDAAGALRRGAWAGVGSPVNDVHVSL 279
Query: 258 RNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRG--SMLRPGFCSLPSTPTR----TPTRP 311
R L+LG +S PS + G YGSP+ + SLPSTPTR T T
Sbjct: 280 RQLRLGSPRSAPSCASFLPAGY----QYGSPKSPAAAAAAALYSLPSTPTRLSPVTVTTA 335
Query: 312 GIGYPDIFNTCWEEEEEEPVMERVESGRDLRAKMFERLSKENSLERVDPYPTNAVDPDLG 371
+ EEE MERVESGR LR K+FERLSKE ++ V PD+G
Sbjct: 336 SGATVTVEPLDLGLIEEEQPMERVESGRALREKVFERLSKEATVSTDAAAAAAGVAPDVG 395
Query: 372 WITELVN 378
W+++L+N
Sbjct: 396 WVSDLIN 402
>sp|O82307|C3H23_ARATH Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis
thaliana GN=At2g25900 PE=2 SV=1
Length = 315
Score = 283 bits (725), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 179/361 (49%), Positives = 225/361 (62%), Gaps = 53/361 (14%)
Query: 1 MMLGE-AHRPNPTILVPPWPQLPDDPTADNIFSPHSLNSNANGSPEYSNLYHIP----ET 55
MM+GE +RP+PTI +P W Q+ +DPTA I SP S + N N +Y H P ++
Sbjct: 1 MMIGENKNRPHPTIHIPQWDQI-NDPTA-TISSPFS-SVNLNSVNDYP---HSPSPYLDS 54
Query: 56 YAALHRYLPSNDPDLDSDSDMSGLDPDSPV-DAYSCDHFRMYEFKVRKCARGRSHDWTEC 114
+A+L RYLPSN+ L +DSD S D SP+ D++S D FR+YEFK+R+CARGRSHDWTEC
Sbjct: 55 FASLFRYLPSNE--LTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTEC 112
Query: 115 PYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCK 174
P+AHPGEKARRRDPRK+HYSGTACP+FRKGSC++GD+CEF+HGVFECWLHP+RYRTQPCK
Sbjct: 113 PFAHPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCK 172
Query: 175 DGGGCKRRVCFFAHTPDQLRILPQQSPRSASASDSPSCAKTLPFLSSPESASPPPSPRTE 234
DG C+RR+CFFAHT +QLR+LP S L F S A+ P S
Sbjct: 173 DGTSCRRRICFFAHTTEQLRVLPC------------SLDPDLGFFSG--LATSPTSILVS 218
Query: 235 SPMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLPSSWNIQVGGVGGSPGYGSPRGSMLR 294
S + S E++AS R +QL GG + SP S +R
Sbjct: 219 PSFSPPSESPPLSPSTGELIASMRKMQLN----------------GGGCSWSSPMRSAVR 262
Query: 295 PGFCSLPSTPTRTPTRPGIGYPDIFNTCWEEEEEEPVMERVESGRDLRAKMFERLSKENS 354
F S P + T P I +I EE P ME VESG++LRA+M+ RLS+ENS
Sbjct: 263 LPFSS-SLRPIQAATWPRIREFEI--------EEAPAMEFVESGKELRAEMYARLSRENS 313
Query: 355 L 355
L
Sbjct: 314 L 314
>sp|Q9ZWA1|C3H2_ARATH Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis
thaliana GN=At1g03790 PE=2 SV=1
Length = 393
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 92/142 (64%), Positives = 110/142 (77%), Gaps = 11/142 (7%)
Query: 71 DSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRK 130
DSDSD D Y+ DHFRM+EFK+R+C R RSHDWT+CP+AHPGEKARRRDPR+
Sbjct: 71 DSDSD----------DPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRR 120
Query: 131 YHYSGTACPDFRKG-SCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHT 189
+ YSG CP+FR+G C +GD CEFAHGVFECWLHP RYRT+ CKDG CKR+VCFFAH+
Sbjct: 121 FQYSGEVCPEFRRGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHS 180
Query: 190 PDQLRILPQQSPRSASASDSPS 211
P QLR+LP ++ SAS SP+
Sbjct: 181 PRQLRVLPPENVSGVSASPSPA 202
>sp|P93755|C3H30_ARATH Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis
thaliana GN=At2g41900 PE=1 SV=2
Length = 716
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 113/165 (68%), Gaps = 5/165 (3%)
Query: 81 PDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPD 140
PD Y+ D FRMY FKVR C+R SHDWTECP+ HPGE ARRRDPRK+HYS CPD
Sbjct: 250 PDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPD 309
Query: 141 FRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILPQQS 200
FRKG+C++GD CE+AHGVFECWLHPA+YRT+ CKDG GC RRVCFFAHTP++LR L +
Sbjct: 310 FRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELRPLYAST 369
Query: 201 ----PRSASASDSPSCAKTLPFLSSPESASPPPSPRTE-SPMSHS 240
P S +D + LP S S P SP + MSHS
Sbjct: 370 GSAVPSPRSNADYAAALSLLPGSPSGVSVMSPLSPSAAGNGMSHS 414
>sp|Q9LXV4|C3H56_ARATH Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis
thaliana GN=At5g12850 PE=2 SV=1
Length = 706
Score = 203 bits (517), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 131/204 (64%), Gaps = 22/204 (10%)
Query: 81 PDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPD 140
PD YS D FRM+ FK+R C+R SHDWTECP+AHPGE ARRRDPRK+HY+ CPD
Sbjct: 246 PDIKSGIYSTDEFRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPD 305
Query: 141 FRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLR-ILPQQ 199
F+KGSCK+GD CE+AHGVFECWLHPA+YRT+ CKDG GC RRVCFFAH ++LR + P
Sbjct: 306 FKKGSCKQGDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAHANEELRPLYPST 365
Query: 200 -----SPR-----SASASDSPSCAKTLPFLSSPESA----SPPPSPRTESPMSHSLSRSL 245
SPR SAS D S LP SP +A +PP SP M HS S+
Sbjct: 366 GSGLPSPRASSAVSASTMDMASVLNMLP--GSPSAAQHSFTPPISPSGNGSMPHS---SM 420
Query: 246 G--TSSINEMMASFRNLQLGKVKS 267
G +I + N+QL +++S
Sbjct: 421 GWPQQNIPALNLPGSNIQLSRLRS 444
>sp|Q10EL1|C3H24_ORYSJ Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa
subsp. japonica GN=Os03g0698800 PE=2 SV=1
Length = 764
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 82/116 (70%), Positives = 92/116 (79%)
Query: 81 PDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPD 140
PD Y+ D FRMY FK+R C+R SHDWTECP+ HPGE ARRRDPRKYHYS CPD
Sbjct: 270 PDIKNSIYASDEFRMYSFKIRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPD 329
Query: 141 FRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRIL 196
FRKG C++GD CE+AHGVFECWLHPA+YRT+ CKDG C RRVCFFAHT D+LR L
Sbjct: 330 FRKGVCRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTTDELRPL 385
>sp|Q9FKW2|C3H61_ARATH Zinc finger CCCH domain-containing protein 61 OS=Arabidopsis
thaliana GN=At5g44260 PE=2 SV=1
Length = 381
Score = 194 bits (494), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 105/140 (75%), Gaps = 11/140 (7%)
Query: 59 LHRYLPSNDPDLDSDSDMSGLDPDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAH 118
L Y D DSDS+ D Y+ DHFRMYEFK+R+C R RSHDWT+CP++H
Sbjct: 37 LRDYKEQKDYCYDSDSE----------DPYAGDHFRMYEFKIRRCTRSRSHDWTDCPFSH 86
Query: 119 PGEKARRRDPRKYHYSGTACPDF-RKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGG 177
PGEKARRRDPR++HY+G CP+F R G C +GD C FAHGVFECWLHP+RYRT+ CKDG
Sbjct: 87 PGEKARRRDPRRFHYTGEVCPEFSRHGDCSRGDECGFAHGVFECWLHPSRYRTEACKDGK 146
Query: 178 GCKRRVCFFAHTPDQLRILP 197
CKR+VCFFAH+P QLR+LP
Sbjct: 147 HCKRKVCFFAHSPRQLRVLP 166
>sp|Q2QPW2|C3H67_ORYSJ Zinc finger CCCH domain-containing protein 67 OS=Oryza sativa
subsp. japonica GN=Os12g0515500 PE=2 SV=1
Length = 619
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 83/117 (70%), Positives = 95/117 (81%), Gaps = 1/117 (0%)
Query: 81 PDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPD 140
PD AY+ D FRMY FKVR C+R SHDWTECP+ HPGE ARRRDPRKYHYS CP+
Sbjct: 162 PDIKNGAYASDDFRMYSFKVRACSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPE 221
Query: 141 FRKGS-CKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRIL 196
F+KG+ C++GD CE+AHGVFE WLHPA+YRT+ CKDG GC RRVCFFAHTPD+LR L
Sbjct: 222 FKKGAGCRRGDMCEYAHGVFESWLHPAQYRTRLCKDGVGCARRVCFFAHTPDELRPL 278
>sp|Q688R3|C3H33_ORYSJ Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa
subsp. japonica GN=Os05g0128200 PE=2 SV=1
Length = 601
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 134/230 (58%), Gaps = 33/230 (14%)
Query: 81 PDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPD 140
PD +S D FRMY FKV+ C+R SHDWTECP+ HPGE ARRRDPR+Y YS CP+
Sbjct: 201 PDLKSGLFSTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRRYSYSCVPCPE 260
Query: 141 FRKG-SCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILPQQ 199
FRKG SC+KGDACE+AHGVFECWLHPA+YRT+ CKD GC RR+CFFAH PD+LR +
Sbjct: 261 FRKGGSCRKGDACEYAHGVFECWLHPAQYRTRLCKDEVGCARRICFFAHKPDELRAV--- 317
Query: 200 SPRSASASDSPSCAKTLPFLSSPESASPP------------PSPRTESPMSHSLSRSLGT 247
+P + S P+ +SSP S SPP SP S + L +LG
Sbjct: 318 NPSAVSVGMQPT-------VSSPRS-SPPNGLDMAAAAAAMMSPAWPSSPASRLKTALGA 369
Query: 248 SSIN---EMMA--SFRNLQLGKVKSLPS---SWNIQVGGVG-GSPGYGSP 288
++ EM+A ++ KV PS SW G+ SP P
Sbjct: 370 RELDFDLEMLALDQYQQKLFDKVSGAPSPRASWGAAANGLATASPARAVP 419
>sp|Q9LUZ4|C3H66_ARATH Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis
thaliana GN=At5g58620 PE=2 SV=1
Length = 607
Score = 189 bits (479), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 78/116 (67%), Positives = 90/116 (77%)
Query: 81 PDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPD 140
PD Y D FRMY FK++ C+R SHDWTECP+ HPGE ARRRDPRKYHYS CP+
Sbjct: 198 PDIKNGVYGTDEFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPE 257
Query: 141 FRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRIL 196
FRKGSC +GD CE+AHG+FECWLHPA+YRT+ CKD C RRVCFFAH P++LR L
Sbjct: 258 FRKGSCSRGDTCEYAHGIFECWLHPAQYRTRLCKDETNCSRRVCFFAHKPEELRPL 313
>sp|Q9XEE6|C3H29_ARATH Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis
thaliana GN=At2g40140 PE=2 SV=1
Length = 597
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 111/176 (63%), Gaps = 21/176 (11%)
Query: 81 PDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPD 140
PD Y D FRM+ FKV+ C+R SHDWTECP+ HPGE ARRRDPRKY Y+ CP+
Sbjct: 203 PDINEGVYGTDDFRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYTCVPCPE 262
Query: 141 FRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILPQQS 200
FRKGSC KGD+CE+AHGVFE WLHPA+YRT+ CKD GC RRVCFFAH D+LR
Sbjct: 263 FRKGSCPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARRVCFFAHRRDELR------ 316
Query: 201 PRSASASDSPSCAKTLPFLSSPESASPPPSPRTESPMSHSLSRSLGTSSINEMMAS 256
P A T + SP S++ P SP+ +LG+S +N MA+
Sbjct: 317 ---------PVNASTGSAMVSPRSSNQSPEMSVMSPL------TLGSSPMNSPMAN 357
>sp|Q93ZS9|C3H47_ARATH Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis
thaliana GN=At3g55980 PE=2 SV=1
Length = 580
Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 107/156 (68%), Gaps = 7/156 (4%)
Query: 81 PDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPD 140
PD Y D FRMY FKV+ C+R SHDWTEC + HPGE ARRRDPRKY Y+ CP+
Sbjct: 200 PDINEGVYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHPGENARRRDPRKYPYTCVPCPE 259
Query: 141 FRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILPQQS 200
FRKGSC KGD+CE+AHGVFE WLHPA+Y+T+ CKD GC R+VCFFAH +++R P +
Sbjct: 260 FRKGSCPKGDSCEYAHGVFESWLHPAQYKTRLCKDETGCARKVCFFAHKREEMR--PVNA 317
Query: 201 PRSASASDSP-SCAKTLPFLS----SPESASPPPSP 231
++ + SP S + +P LS S ++PP SP
Sbjct: 318 STGSAVAQSPFSSLEMMPGLSPLAYSSGVSTPPVSP 353
>sp|Q84SL2|C3H50_ORYSJ Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa
subsp. japonica GN=Os07g0568300 PE=2 SV=1
Length = 657
Score = 178 bits (451), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/195 (47%), Positives = 120/195 (61%), Gaps = 13/195 (6%)
Query: 81 PDSPVDAYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPD 140
PD Y+ D FRM+ FKVR C+R SHDWTECP+ HPGE ARRRDPRK+ Y+ CP+
Sbjct: 223 PDIKSSVYASDEFRMFAFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKHPYTAVPCPN 282
Query: 141 FRK-GSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILPQQ 199
FR+ G C GD+CEF+HGVFE WLHP++YRT+ CK+G C RR+CFFAH D+LR +P
Sbjct: 283 FRRPGGCPSGDSCEFSHGVFESWLHPSQYRTRLCKEGAACARRICFFAHDEDELRHVPHN 342
Query: 200 ------SPRSASASDSPSCAK--TLPFLSSPESASPPPSP----RTESPMSHSLSRSLGT 247
SPR++S+ D + A LP + A PP SP + +H L S
Sbjct: 343 SGAGLLSPRASSSIDMTAAAALGLLPGSPTRHFAPPPVSPSAGSNGGAAAAHWLQGSRLR 402
Query: 248 SSINEMMASFRNLQL 262
SS N A+ +L +
Sbjct: 403 SSFNARDAAVDDLGM 417
>sp|Q65X92|C3H37_ORYSJ Zinc finger CCCH domain-containing protein 37 OS=Oryza sativa
subsp. japonica GN=Os05g0525900 PE=2 SV=1
Length = 255
Score = 172 bits (436), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 110/182 (60%), Gaps = 12/182 (6%)
Query: 93 FRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRK---GSCKKG 149
F MYEFKVR+CAR RSHDWT CPYAHPGE ARRRDPR+ Y+G CPDFR+ +C +G
Sbjct: 59 FMMYEFKVRRCARARSHDWTACPYAHPGEAARRRDPRRVAYTGEPCPDFRRRPGAACPRG 118
Query: 150 DACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLRILPQQSPRSASASDS 209
C FAHG FE WLHP+RYRT+PC+ G C+RRVCFFAHT +L R+ S DS
Sbjct: 119 STCPFAHGTFELWLHPSRYRTRPCRAGVACRRRVCFFAHTAGEL--------RAGSKEDS 170
Query: 210 PSCAKTLPFLSSPESASPPPSPRTESPMSHSLSRSLGTSSINEMMASFRNLQLGKVKSLP 269
P L+S SPP SP + + + E+M + R L L KV+
Sbjct: 171 PLSLSPKSTLASLWE-SPPVSPVEGRRWVDGIDECDADAEMEELMFAMRELGLRKVRPSA 229
Query: 270 SS 271
SS
Sbjct: 230 SS 231
>sp|O65036|C3H54_ARATH Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis
thaliana GN=PEI1 PE=1 SV=1
Length = 245
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 77/119 (64%), Positives = 91/119 (76%), Gaps = 3/119 (2%)
Query: 79 LDPDSP-VD--AYSCDHFRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSG 135
+DP P +D Y D FRMY +K+++C R RSHDWTECPYAH GEKA RRDPR+Y Y
Sbjct: 36 IDPSIPNIDDAIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCA 95
Query: 136 TACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQLR 194
ACP FR G+C +GD+CEFAHGVFE WLHPARYRT+ C G C+R+VCFFAH P+QLR
Sbjct: 96 VACPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLR 154
>sp|Q94JI5|C3H10_ORYSJ Zinc finger CCCH domain-containing protein 10 OS=Oryza sativa
subsp. japonica GN=Os01g0738400 PE=2 SV=1
Length = 225
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 104/162 (64%), Gaps = 15/162 (9%)
Query: 76 MSGLDPDSPVDAYSCDH---FRMYEFKVRKCARGRSHDWTECPYAHPGEKARRRDPRKYH 132
++G + SP C + F MYEFKVR+C R R+H+WT CPYAHPGE ARRRDP
Sbjct: 25 LAGAEASSPTWGGRCAYDEDFMMYEFKVRRCPRSRAHEWTSCPYAHPGEAARRRDPSHVT 84
Query: 133 YSGTACPDFR---KGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHT 189
Y+G CPDFR + +C +G C FAHG FE WLHP+RYRT+PC+ G C R VCFFAH
Sbjct: 85 YTGEPCPDFRVAARAACPRGSGCPFAHGTFETWLHPSRYRTRPCRSGMLCARPVCFFAHN 144
Query: 190 PDQLRILPQQSPRSASASDSPSCAKTLPFLSSPESASPPPSP 231
+LRI+ +A+A+ SP PF +S + SPPPSP
Sbjct: 145 DKELRIVGDD---AAAATPSPRS----PFTTSED--SPPPSP 177
>sp|Q86B79|UNK_DROME RING finger protein unkempt OS=Drosophila melanogaster GN=unk PE=1
SV=1
Length = 599
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 63 LPSNDPDLDSDSDMSGLDPDSPVD----AYSCDHFRMYEFKVRKCAR--GRSHDWTECPY 116
L + + LDS + ++ LD + + + ++ + +K C R CP
Sbjct: 156 LQNAESTLDSTNALNALDKERNLMNEDPKWQDTNYVLANYKTEPCKRPPRLCRQGYACPQ 215
Query: 117 AHPGEKARRRDPRKYHYSGTACPDFRKG-------SCKKGDACEFAHGVFECWLHPARYR 169
H K +RR PRKY Y T CP+ + G +C+ GD C++ H E HP Y+
Sbjct: 216 YH-NSKDKRRSPRKYKYRSTPCPNVKHGEEWGEPGNCEAGDNCQYCHTRTEQQFHPEIYK 274
Query: 170 TQPCKD---GGGCKRRV-CFFAHTPDQLRILPQQSPRSASASDS 209
+ C D G C R V C FAH P+++ SAS +++
Sbjct: 275 STKCNDVQQAGYCPRSVFCAFAHVEPCSMDDPRENSLSASLANT 318
>sp|Q8BL48|UNK_MOUSE RING finger protein unkempt homolog OS=Mus musculus GN=Unk PE=1
SV=1
Length = 810
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Query: 101 RKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKG-------SCKKGDACE 153
R C +G + CPY H K RRR PRK+ Y + CP+ + G C+ GDAC+
Sbjct: 226 RLCRQGYA-----CPYYH-NSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQ 279
Query: 154 FAHGVFECWLHPARYRTQPCKD---GGGCKRR-VCFFAHT 189
+ H E HP Y++ C D G C R C FAH
Sbjct: 280 YCHTRTEQQFHPEIYKSTKCNDMQQAGSCPRGPFCAFAHI 319
>sp|Q9C0B0|UNK_HUMAN RING finger protein unkempt homolog OS=Homo sapiens GN=UNK PE=1
SV=2
Length = 810
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Query: 101 RKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKG-------SCKKGDACE 153
R C +G + CPY H K RRR PRK+ Y + CP+ + G C+ GDAC+
Sbjct: 226 RLCRQGYA-----CPYYH-NSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQ 279
Query: 154 FAHGVFECWLHPARYRTQPCKD---GGGCKRR-VCFFAHT 189
+ H E HP Y++ C D G C R C FAH
Sbjct: 280 YCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHV 319
>sp|Q6EE22|UNK_CANFA RING finger protein unkempt homolog OS=Canis familiaris GN=UNK PE=2
SV=1
Length = 810
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Query: 101 RKCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKG-------SCKKGDACE 153
R C +G + CPY H K RRR PRK+ Y + CP+ + G C+ GDAC+
Sbjct: 226 RLCRQGYA-----CPYYH-NSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQ 279
Query: 154 FAHGVFECWLHPARYRTQPCKD---GGGCKRR-VCFFAHT 189
+ H E HP Y++ C D G C R C FAH
Sbjct: 280 YCHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHV 319
>sp|Q7XSB2|C3H29_ORYSJ Putative zinc finger CCCH domain-containing protein 29 OS=Oryza
sativa subsp. japonica GN=Os04g0487500 PE=4 SV=2
Length = 146
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 26/34 (76%)
Query: 127 DPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFE 160
D R Y SGTAC DFRKG C GDACEFAHGVF+
Sbjct: 106 DTRPYCDSGTACLDFRKGGCNHGDACEFAHGVFD 139
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 133 YSGTACPDFRK-GSCKKGDACEFAHGVFE---CWLHPARYRTQPCKDG---GGCKRR-VC 184
Y C F + G+CK G+ C+FAHG E HP +Y+T+ C+ G C C
Sbjct: 134 YKTELCRPFEENGACKYGEKCQFAHGFHELRSLTRHP-KYKTELCRTFHTIGFCPYGPRC 192
Query: 185 FFAHTPDQLRILPQQSPR-----SASASDSPSCAKTLPFLSSPESASPPP 229
F H ++ R P R S S S P+ + P L SP S +PPP
Sbjct: 193 HFIHNAEERRQAPGAGERPKLHHSLSFSGFPNHSLDSPLLESPTSRTPPP 242
>sp|Q5FWH2|UNKL_MOUSE Putative E3 ubiquitin-protein ligase UNKL OS=Mus musculus GN=Unkl
PE=2 SV=2
Length = 727
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 131 YHYSGTACPDFRKGS-------CKKGDACEFAHGVFECWLHPARYRTQPCKD---GGGCK 180
+ Y T CP + G C GD+C++ H E HP Y++ C D G C
Sbjct: 242 FQYRSTPCPSVKHGDEWGEPSRCDGGDSCQYCHSRTEQQFHPEIYKSTKCNDMRQTGYCP 301
Query: 181 RR-VCFFAHTPDQLRILPQQSPR 202
R C FAHT L ++ + S R
Sbjct: 302 RGPFCAFAHTEKSLAMVNEWSCR 324
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 112 TECPYAHPGEKARRRDP------------RKYHYSGTACPDFR-KGSCKKGDACEFAHGV 158
T PY P +K + +P K Y C F KG CK G+ C+FAHG+
Sbjct: 172 TGLPYTLPIQKTTKLEPCRRAPLQLPQLVNKTLYKTELCESFTIKGYCKYGNKCQFAHGL 231
Query: 159 FECWLHPA--RYRTQPCKDG---GGC--KRRVCF 185
E YRT+PC + G C +R CF
Sbjct: 232 NELKFKKKSNNYRTKPCINWSKLGYCPYGKRCCF 265
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 117 AHPGEKARRRDPRKYHYSGTACPDFR-KGSCKKGDACEFAHGVFECWLHPA--RYRTQPC 173
A P K++ ++ K Y C F KGSC G C+FAHG+ E + + +RT+PC
Sbjct: 154 AQPKVKSQVQETPKQLYKTELCESFTLKGSCPYGSKCQFAHGLGELKVKKSCKNFRTKPC 213
Query: 174 ---KDGGGC--KRRVCF 185
+ G C RR CF
Sbjct: 214 VNWEKLGYCPYGRRCCF 230
>sp|A3BUD2|C3H57_ORYSJ Putative zinc finger CCCH domain-containing protein 57 OS=Oryza
sativa subsp. japonica GN=Os08g0491700 PE=4 SV=1
Length = 605
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 11/64 (17%)
Query: 122 KARRRDPRKYHYSGTACPDF-RKGSCKKGDACEFAHGVFECWLHPAR--YRTQPCK---D 175
K + R+P+ CPD+ R G C GD CE+AH E + AR YRT+PC+
Sbjct: 514 KQKMREPKT-----VMCPDWCRTGHCSSGDGCEYAHSQDELRVIDARPKYRTEPCRYWLA 568
Query: 176 GGGC 179
G GC
Sbjct: 569 GKGC 572
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 133 YSGTACPDFRK-GSCKKGDACEFAHGVFE---CWLHPARYRTQPCKDG---GGCKRR-VC 184
Y C F + G+CK G+ C+FAHG E HP +Y+T+ C+ G C C
Sbjct: 132 YKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHP-KYKTELCRTFHTIGFCPYGPRC 190
Query: 185 FFAHTPDQLRILPQQSPR-----SASASDSPS-CAKTLPFLSSPESASPPP 229
F H ++ R P R S S S P+ + P L SP S +PPP
Sbjct: 191 HFIHNAEERRQAPGAGERPKLHHSLSFSGFPNHSLDSAPLLESPTSRTPPP 241
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 133 YSGTACPDFRK-GSCKKGDACEFAHGVFE---CWLHPARYRTQPCKDG---GGCKRR-VC 184
Y C F + G+CK G+ C+FAHG E HP +Y+T+ C+ G C C
Sbjct: 102 YKTELCRPFEESGACKYGEKCQFAHGFHELRSLTRHP-KYKTELCRTFHTIGFCPYGPRC 160
Query: 185 FFAHTPDQLRILPQQSPR-----SASASDSPSCAKTLPFLSSPESASPPP 229
H ++ R P R S S S P+ + P L SP S +PPP
Sbjct: 161 HLIHNAEERRQAPGAGERPKLHHSLSFSGFPNHSLDSPLLESPTSRTPPP 210
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 39.3 bits (90), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 50/120 (41%), Gaps = 27/120 (22%)
Query: 133 YSGTACPDFRK-GSCKKGDACEFAHGVFE---CWLHPARYRTQPCKDG---GGCKRR-VC 184
Y C F + G+CK GD C+FAHG+ E HP +Y+T+ C+ G C C
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHP-KYKTELCRTFHTIGFCPYGPRC 173
Query: 185 FFAHTPDQLRILPQQSPRSASASDSPSCAKTLPF---------------LSSPESASPPP 229
F H ++ R L SA D P + F L SP S +PPP
Sbjct: 174 HFIHNAEERRALAGARDLSA---DRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPP 230
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 50/120 (41%), Gaps = 27/120 (22%)
Query: 133 YSGTACPDFRK-GSCKKGDACEFAHGVFE---CWLHPARYRTQPCKDG---GGCKRR-VC 184
Y C F + G+CK GD C+FAHG+ E HP +Y+T+ C+ G C C
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHP-KYKTELCRTFHTIGFCPYGPRC 173
Query: 185 FFAHTPDQLRILPQQSPRSASASDSPSCAKTLPF---------------LSSPESASPPP 229
F H ++ R L SA D P + F L SP S +PPP
Sbjct: 174 HFIHNAEERRALAGGRDLSA---DRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPP 230
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 50/120 (41%), Gaps = 27/120 (22%)
Query: 133 YSGTACPDFRK-GSCKKGDACEFAHGVFE---CWLHPARYRTQPCKDG---GGCKRR-VC 184
Y C F + G+CK GD C+FAHG+ E HP +Y+T+ C+ G C C
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAHGIHELRSLTRHP-KYKTELCRTFHTIGFCPYGPRC 173
Query: 185 FFAHTPDQLRILPQQSPRSASASDSPSCAKTLPF---------------LSSPESASPPP 229
F H ++ R L SA D P + F L SP S +PPP
Sbjct: 174 HFIHNAEERRALAGGRDLSA---DRPRLQHSFSFAGFPSAAATAAATGLLDSPTSITPPP 230
>sp|Q9NUK0|MBNL3_HUMAN Muscleblind-like protein 3 OS=Homo sapiens GN=MBNL3 PE=2 SV=2
Length = 354
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQL 193
C +F++G+C + DA C+FAH C H R C D G C R C + H P L
Sbjct: 19 VCREFQRGTCSRADADCKFAHPPRVC--HVENGRVVACFDSLKGRCTRENCKYLHPPPHL 76
Query: 194 R 194
+
Sbjct: 77 K 77
>sp|Q56V19|MBNL3_TAKRU Muscleblind-like protein 3 OS=Takifugu rubripes GN=mbnl3 PE=2 SV=1
Length = 323
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQL 193
C +F++G+C + DA C+FAH C H R C D G C R C + H P L
Sbjct: 18 VCREFQRGTCSRSDAECKFAHPSRSC--HVENGRVIACFDSLKGRCTRENCKYLHPPPHL 75
Query: 194 R 194
+
Sbjct: 76 K 76
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKD--GGGCKRRVCFFAHTPDQL 193
C +F++G+C +G++ C +AH + + + C D G C R C + H P L
Sbjct: 182 VCREFQRGNCTRGESDCRYAHPLEAGMVDSSENSVIVCMDYIKGRCSRDKCKYFHPPAHL 241
Query: 194 --RILPQQ---SPRSASASDSP 210
RI Q S +ASA+ SP
Sbjct: 242 QARIKASQHQASQNTASAALSP 263
>sp|Q8R003|MBNL3_MOUSE Muscleblind-like protein 3 OS=Mus musculus GN=Mbnl3 PE=2 SV=1
Length = 342
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQL 193
C +F++G+C + DA C FAH C H R C D G C R C + H P L
Sbjct: 19 VCREFQRGTCSRADAECRFAHPPRVC--HVENGRVVACFDSLKGRCTRENCKYLHPPPHL 76
Query: 194 R 194
+
Sbjct: 77 K 77
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKD--GGGCKRRVCFFAHTPDQL 193
C +F++G+C +G++ C +AH + C D G C R C + H P L
Sbjct: 179 VCREFQRGNCTRGESECRYAHPTDVSMIEVTDNSVTICMDYIKGRCSREKCKYFHPPPHL 238
Query: 194 R 194
+
Sbjct: 239 Q 239
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 144 GSCKKGDACEFAHGVFE---CWLHPARYRTQPCK---DGGGC-KRRVCFFAHT 189
G+C GD C+FAHGV E HP RY+TQ C+ GG C C F H+
Sbjct: 281 GACPYGDQCQFAHGVAELRPVIRHP-RYKTQVCRMVLAGGVCPYGHRCHFRHS 332
>sp|Q9H9P5|UNKL_HUMAN Putative E3 ubiquitin-protein ligase UNKL OS=Homo sapiens GN=UNKL
PE=1 SV=3
Length = 680
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 114 CPYAHPGEKARRRDPRKYHYSGTACPDFRKGS-------CKKGDACEFAHGVFECWLHPA 166
CP+ H + RRR+PR++ Y T CP + G C GD C++ H E HP
Sbjct: 226 CPHYH-NSRDRRRNPRRFQYRSTPCPSVKHGDEWGEPSRCDGGDGCQYCHSRTEQQFHPE 284
Query: 167 RYRTQPCKDGGGCKRR-VCFFAHTPDQLRIL 196
+ + G C R C FAH L ++
Sbjct: 285 STKCNDMRQTGYCPRGPFCAFAHVEKSLGMV 315
>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis
thaliana GN=At3g19360 PE=2 SV=1
Length = 386
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 133 YSGTACPDFRKGSCKKGDACEFAHGV 158
Y C FR G+C+ G+ C FAHG+
Sbjct: 105 YKTRMCAKFRAGTCRNGELCNFAHGI 130
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 144 GSCKKGDACEFAHGVFE---CWLHPARYRTQPCK---DGGGC-KRRVCFFAHT-PDQLRI 195
G+C GD C+FAHG+ E HP RY+T+ C+ G C C F H+ DQ R+
Sbjct: 245 GACCYGDNCQFAHGIDELRPVIRHP-RYKTEVCRMMVTGAMCPYGHRCHFRHSLTDQERM 303
Query: 196 LPQQSPR 202
+ R
Sbjct: 304 MMMMLTR 310
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 35.8 bits (81), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 138 CPDFRKGSCKKGDACEFAHGVFE---CWLHPARYRTQPCK---DGGGC-KRRVCFFAHTP 190
C + +G+C G C FAHG+ E HP RY+T PC+ GC C F H+P
Sbjct: 388 CNKWERGACPYGARCRFAHGLQELRPVIRHP-RYKTLPCQMFAAASGCPYGHRCHFRHSP 446
>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30
OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1
Length = 631
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 129 RKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAH 188
R + T C + +G C KGDAC F H + + R+ + G C+ + C + H
Sbjct: 57 RGRSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRF----FRLYGECREQDCVYKH 112
Query: 189 TPDQLR 194
T + ++
Sbjct: 113 TNEDIK 118
>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa
subsp. japonica GN=Os06g0677700 PE=2 SV=1
Length = 665
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 133 YSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHTPDQ 192
Y T C + +G C KG+AC F H + + R+ +D G C+ C + H+ D
Sbjct: 59 YRQTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRF----FRDFGECREPDCAYKHSYDD 114
Query: 193 LR 194
++
Sbjct: 115 VK 116
>sp|Q9NR56|MBNL1_HUMAN Muscleblind-like protein 1 OS=Homo sapiens GN=MBNL1 PE=1 SV=2
Length = 388
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQL 193
C +F++G+C + D C+FAH C + R C D G C R C + H P L
Sbjct: 18 VCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIA--CFDSLKGRCSRENCKYLHPPPHL 75
Query: 194 R 194
+
Sbjct: 76 K 76
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 144 GSCKKGDACEFAHGVFE---CWLHPARYRTQPCK 174
G+C GD C+FAHG+ E HP RY+T+ C+
Sbjct: 235 GTCPYGDHCQFAHGIKELRPVIRHP-RYKTEVCR 267
>sp|Q5ZKW9|MBNL1_CHICK Muscleblind-like protein 1 OS=Gallus gallus GN=MBNL1 PE=2 SV=1
Length = 369
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQL 193
C +F++G+C + D C+FAH C + R C D G C R C + H P L
Sbjct: 18 VCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIA--CFDSLKGRCSRENCKYLHPPPHL 75
Query: 194 R 194
+
Sbjct: 76 K 76
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKD--GGGCKRRVCFFAHTPDQL 193
C ++++G+C +G+ C FAH + C D G C R C + H P L
Sbjct: 183 VCREYQRGNCNRGENDCRFAHPADSAMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHL 242
Query: 194 R 194
+
Sbjct: 243 Q 243
>sp|Q69NK8|C3H59_ORYSJ Zinc finger CCCH domain-containing protein 59 OS=Oryza sativa
subsp. japonica GN=Os09g0364000 PE=2 SV=1
Length = 613
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 13/57 (22%)
Query: 103 CARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDF-RKGSCKKGDACEFAHGV 158
C RG ++C Y H E+AR HY+ C DF KG C+KG C FAH +
Sbjct: 333 CPRG-----SKCNYRHD-EEARE------HYNRNVCFDFLNKGKCEKGPECRFAHSL 377
>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa
subsp. japonica GN=Os06g0618100 PE=2 SV=1
Length = 295
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 115 PYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPA 166
P +PG + P ++ C +F KGSC GD C FAHG E PA
Sbjct: 243 PAKNPGRGSHAGGPGS-NFKTKLCENFNKGSCTFGDRCHFAHGESELRKPPA 293
>sp|Q9JKP5|MBNL1_MOUSE Muscleblind-like protein 1 OS=Mus musculus GN=Mbnl1 PE=1 SV=1
Length = 341
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 137 ACPDFRKGSCKKGDA-CEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQL 193
C +F++G+C + D C+FAH C + R C D G C R C + H P L
Sbjct: 18 VCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIA--CFDSLKGRCSRENCKYLHPPPHL 75
Query: 194 R 194
+
Sbjct: 76 K 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,306,410
Number of Sequences: 539616
Number of extensions: 8184720
Number of successful extensions: 29350
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 191
Number of HSP's that attempted gapping in prelim test: 28669
Number of HSP's gapped (non-prelim): 730
length of query: 381
length of database: 191,569,459
effective HSP length: 119
effective length of query: 262
effective length of database: 127,355,155
effective search space: 33367050610
effective search space used: 33367050610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)