Query 016862
Match_columns 381
No_of_seqs 187 out of 323
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 05:01:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.4 4E-14 1.4E-18 109.5 3.2 62 131-192 8-76 (77)
2 1m9o_A Tristetraproline; Cys3H 99.1 2.1E-11 7.3E-16 94.2 2.5 64 96-160 8-76 (77)
3 3d2q_A Muscleblind-like protei 99.0 2.1E-11 7.2E-16 94.5 -0.9 61 135-195 6-69 (70)
4 2d9n_A Cleavage and polyadenyl 98.8 2.2E-09 7.4E-14 84.4 3.1 61 128-195 3-66 (77)
5 2cqe_A KIAA1064 protein; CCCH 98.6 1.3E-08 4.6E-13 83.7 3.7 48 132-191 10-61 (98)
6 2d9m_A Zinc finger CCCH-type d 98.6 4.1E-09 1.4E-13 83.0 0.4 42 135-176 20-64 (69)
7 2e5s_A Otthump00000018578; ZF- 98.6 2E-09 7E-14 88.9 -3.1 61 135-195 20-83 (98)
8 2rhk_C Cleavage and polyadenyl 98.5 1.3E-08 4.3E-13 79.7 0.6 55 133-194 14-71 (72)
9 2d9n_A Cleavage and polyadenyl 98.3 2.5E-07 8.5E-12 72.6 2.5 62 97-176 7-72 (77)
10 2cqe_A KIAA1064 protein; CCCH 98.3 4.7E-07 1.6E-11 74.5 3.5 47 97-158 10-60 (98)
11 3d2n_A Muscleblind-like protei 98.1 9.1E-07 3.1E-11 71.2 1.3 59 134-194 8-69 (83)
12 3d2q_A Muscleblind-like protei 98.0 1.6E-06 5.4E-11 67.0 1.8 60 99-162 5-68 (70)
13 2rpp_A Muscleblind-like protei 97.8 2.2E-06 7.4E-11 70.0 0.0 58 135-194 17-77 (89)
14 2e5s_A Otthump00000018578; ZF- 97.7 5.7E-06 2E-10 68.2 0.5 63 96-162 16-82 (98)
15 2rhk_C Cleavage and polyadenyl 97.6 9.5E-06 3.2E-10 63.3 0.6 54 96-160 12-69 (72)
16 2d9m_A Zinc finger CCCH-type d 97.3 2.4E-05 8.4E-10 61.6 -0.7 29 167-195 17-48 (69)
17 3d2n_A Muscleblind-like protei 97.3 0.00013 4.4E-09 58.6 3.1 60 97-162 6-69 (83)
18 2rpp_A Muscleblind-like protei 96.6 0.00064 2.2E-08 55.4 1.6 57 99-161 16-76 (89)
19 2lhn_A Nuclear polyadenylated 95.1 0.00098 3.4E-08 53.7 0.0 63 101-191 10-73 (80)
20 2lhn_A Nuclear polyadenylated 92.1 0.018 6.1E-07 46.4 0.0 42 135-189 9-50 (80)
21 3u1l_A PRE-mRNA-splicing facto 87.5 0.11 3.7E-06 48.6 0.0 24 135-158 70-93 (240)
22 2fc6_A Nuclear, target of EGR1 85.2 0.18 6.2E-06 37.5 0.2 27 133-159 18-45 (50)
23 2fc6_A Nuclear, target of EGR1 78.8 0.72 2.5E-05 34.3 1.3 25 167-191 17-45 (50)
24 3u9g_A Zinc finger CCCH-type a 77.4 1.3 4.3E-05 41.9 2.9 42 134-191 150-198 (229)
25 3v33_A Ribonuclease ZC3H12A; r 57.6 2.1 7.1E-05 40.1 -0.1 35 121-157 178-212 (223)
26 3v33_A Ribonuclease ZC3H12A; r 36.5 7.4 0.00025 36.4 0.0 27 95-122 187-214 (223)
27 3u9g_A Zinc finger CCCH-type a 27.3 29 0.00098 32.8 2.3 23 137-160 177-199 (229)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.43 E-value=4e-14 Score=109.50 Aligned_cols=62 Identities=32% Similarity=0.762 Sum_probs=30.2
Q ss_pred CCccCCCCcCCc-cCCCCCCCCCCCCcCcchhhcC--cCCccCcCCCCC---CCCCC-cccCCCCCCcc
Q 016862 131 YHYSGTACPDFR-KGSCKKGDACEFAHGVFECWLH--PARYRTQPCKDG---GGCKR-RVCFFAHTPDQ 192 (381)
Q Consensus 131 ~~Yst~lCP~fr-kG~C~~Gd~C~FAHg~~El~~H--P~~YKTk~Ck~~---g~C~r-~~C~FAH~~~E 192 (381)
-+|++++|+.|. +|.|++|++|.|+|+..|++.. ...|||++|+.| |.|++ ..|.|+|+.+|
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC---------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 468899999995 8999999999999999999852 237999999976 89995 89999999876
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.10 E-value=2.1e-11 Score=94.17 Aligned_cols=64 Identities=30% Similarity=0.624 Sum_probs=25.1
Q ss_pred eccceeccCC----CCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCc-cCCCCCCCCCCCCcCcch
Q 016862 96 YEFKVRKCAR----GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFR-KGSCKKGDACEFAHGVFE 160 (381)
Q Consensus 96 ~~FKTr~C~r----g~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~fr-kG~C~~Gd~C~FAHg~~E 160 (381)
..|||++|.. +.|..+..|.|+|..+ +.|..+..-.|++.+|+.|. +|.|++|++|.|+|+..|
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~-e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLG-ELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSC-CGGGTC---------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCCh-hhccccccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 3689999984 6799999999999965 44544444468899999876 799999999999999876
No 3
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.01 E-value=2.1e-11 Score=94.45 Aligned_cols=61 Identities=28% Similarity=0.714 Sum_probs=56.6
Q ss_pred CCCCcCCccCCCCCCC-CCCCCcCcchhhcCcCCccCcCCCCC--CCCCCcccCCCCCCcccCC
Q 016862 135 GTACPDFRKGSCKKGD-ACEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQLRI 195 (381)
Q Consensus 135 t~lCP~frkG~C~~Gd-~C~FAHg~~El~~HP~~YKTk~Ck~~--g~C~r~~C~FAH~~~ELR~ 195 (381)
...|++|.+|.|.+|+ .|.|+|..++++..+..+|+..|.+| |.|.+..|.|.|.+.+|+.
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQA 69 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCHHHHC
T ss_pred chhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHHHHhc
Confidence 4689999999999999 59999999999999999999999998 9999999999999988874
No 4
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.2e-09 Score=84.41 Aligned_cols=61 Identities=30% Similarity=0.562 Sum_probs=50.7
Q ss_pred CCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhhcCcCCccCcCCCCC---CCCCCcccCCCCCCcccCC
Q 016862 128 PRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDG---GGCKRRVCFFAHTPDQLRI 195 (381)
Q Consensus 128 P~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~---g~C~r~~C~FAH~~~ELR~ 195 (381)
|....+++.+|+.|.+|.|.+|++|.|+|.... -|+.+|+.| |.|.+..|.|+|...+.+.
T Consensus 3 p~~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~~ 66 (77)
T 2d9n_A 3 SGSSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMPECYFYSKFGECSNKECPFLHIDPESKI 66 (77)
T ss_dssp CCCSCCTTSBCHHHHTTCCSCTTSSSSBCSCCT-------TTSCBCHHHHHTCCCCCSSCSSBCCCTTSSC
T ss_pred CCCCCCcceeCHhHccCcCCCCCCCCCcccccc-------CcCCCCcccCCCCccCCCCeeccCCCccccC
Confidence 444557789999999999999999999999654 267789998 8999999999999766553
No 5
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.64 E-value=1.3e-08 Score=83.71 Aligned_cols=48 Identities=31% Similarity=0.752 Sum_probs=43.3
Q ss_pred CccCCCCcCCccCCCCCCCCCCCCcCcchhhcCcCCccCcCCCCC---CCCCC-cccCCCCCCc
Q 016862 132 HYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDG---GGCKR-RVCFFAHTPD 191 (381)
Q Consensus 132 ~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~---g~C~r-~~C~FAH~~~ 191 (381)
.+++.+|+.|.+|.|.+|++|.|+|. +.+|+.| |.|++ ..|.|+|...
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~------------~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG------------DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 36799999999999999999999999 6789987 89996 8999999864
No 6
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=4.1e-09 Score=83.02 Aligned_cols=42 Identities=26% Similarity=0.561 Sum_probs=38.2
Q ss_pred CCCCcCCccCCCCCCCCCCCCcCcchhhc---CcCCccCcCCCCC
Q 016862 135 GTACPDFRKGSCKKGDACEFAHGVFECWL---HPARYRTQPCKDG 176 (381)
Q Consensus 135 t~lCP~frkG~C~~Gd~C~FAHg~~El~~---HP~~YKTk~Ck~~ 176 (381)
+++|..|.+|.|++|++|.||||..||+- .+..+|+++|+..
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~Ar 64 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKAS 64 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSCC
T ss_pred cccCcccCcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHHh
Confidence 49999999999999999999999999986 5778899999875
No 7
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2e-09 Score=88.87 Aligned_cols=61 Identities=30% Similarity=0.718 Sum_probs=55.0
Q ss_pred CCCCcCCccCCCCCCC-CCCCCcCcchhhcCcCCccCcCCCCC--CCCCCcccCCCCCCcccCC
Q 016862 135 GTACPDFRKGSCKKGD-ACEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQLRI 195 (381)
Q Consensus 135 t~lCP~frkG~C~~Gd-~C~FAHg~~El~~HP~~YKTk~Ck~~--g~C~r~~C~FAH~~~ELR~ 195 (381)
...|++|.+|.|.+|| .|.|+|...+.+..+...++..|.+| |.|.+..|.|.|...+|+.
T Consensus 20 ~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 20 LEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQA 83 (98)
T ss_dssp EEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred hhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChHHHHH
Confidence 5789999999999999 79999999888777778999999999 9999999999999887753
No 8
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.53 E-value=1.3e-08 Score=79.66 Aligned_cols=55 Identities=31% Similarity=0.624 Sum_probs=46.1
Q ss_pred ccCCCCcCCccCCCCCCCCCCCCcCcchhhcCcCCccCcCCCCC---CCCCCcccCCCCCCcccC
Q 016862 133 YSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDG---GGCKRRVCFFAHTPDQLR 194 (381)
Q Consensus 133 Yst~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~---g~C~r~~C~FAH~~~ELR 194 (381)
+++.+|+.|.+|.|.+|++|.|+|.... -|+.+|+.| |.|.+..|.|.|...+.+
T Consensus 14 ~k~~vCk~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~y~H~~p~~k 71 (72)
T 2rhk_C 14 EKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMSECYFYSKFGECSNKECPFLHIDPESK 71 (72)
T ss_dssp CCCSBCHHHHTTCCCCGGGSSSBCSCCT-------TSCCBCHHHHHHSCCSBTTCCSBCCCCC--
T ss_pred CcCeeCHHHhcCCCCCCCCCCCcccccc-------ccCCcccccCCCCCCCCCCeeccCCCcccc
Confidence 4578999999999999999999999542 378899997 899999999999876554
No 9
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=2.5e-07 Score=72.65 Aligned_cols=62 Identities=23% Similarity=0.418 Sum_probs=50.1
Q ss_pred ccceeccCC---CCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCcc-CCCCCCCCCCCCcCcchhhcCcCCccCcC
Q 016862 97 EFKVRKCAR---GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRK-GSCKKGDACEFAHGVFECWLHPARYRTQP 172 (381)
Q Consensus 97 ~FKTr~C~r---g~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frk-G~C~~Gd~C~FAHg~~El~~HP~~YKTk~ 172 (381)
..|+..|.. |.|..+++|.|+|.... + ++..|..|.+ |.|. |++|.|+|...+ -|+..
T Consensus 7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~~~--~--------~~~~C~~f~~~G~C~-~~~C~f~H~~~~-------~~~~~ 68 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCKKGDQCEFLHEYDM--T--------KMPECYFYSKFGECS-NKECPFLHIDPE-------SKIKD 68 (77)
T ss_dssp CCTTSBCHHHHTTCCSCTTSSSSBCSCCT--T--------TSCBCHHHHHTCCCC-CSSCSSBCCCTT-------SSCSS
T ss_pred CCcceeCHhHccCcCCCCCCCCCcccccc--C--------cCCCCcccCCCCccC-CCCeeccCCCcc-------ccCCC
Confidence 367888874 88999999999998532 1 2458999998 9999 899999999653 46888
Q ss_pred CCCC
Q 016862 173 CKDG 176 (381)
Q Consensus 173 Ck~~ 176 (381)
|.+|
T Consensus 69 C~~f 72 (77)
T 2d9n_A 69 CPWS 72 (77)
T ss_dssp SSCC
T ss_pred Cccc
Confidence 9887
No 10
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.25 E-value=4.7e-07 Score=74.48 Aligned_cols=47 Identities=32% Similarity=0.670 Sum_probs=41.8
Q ss_pred ccceeccCC---CCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCC-ccCCCCCCCCCCCCcCc
Q 016862 97 EFKVRKCAR---GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDF-RKGSCKKGDACEFAHGV 158 (381)
Q Consensus 97 ~FKTr~C~r---g~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~f-rkG~C~~Gd~C~FAHg~ 158 (381)
.+|+..|.. |.|..+.+|+|+|. +.+|+.| .+|.|++|++|.|+|..
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~ 60 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDP 60 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCC
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCC
Confidence 478889986 78999999999997 5789999 58999999999999985
No 11
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.05 E-value=9.1e-07 Score=71.18 Aligned_cols=59 Identities=34% Similarity=0.826 Sum_probs=45.7
Q ss_pred cCCCCcCCccCCCCCCC-CCCCCcCcchhhcCcCCccCcCCCCC--CCCCCcccCCCCCCcccC
Q 016862 134 SGTACPDFRKGSCKKGD-ACEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQLR 194 (381)
Q Consensus 134 st~lCP~frkG~C~~Gd-~C~FAHg~~El~~HP~~YKTk~Ck~~--g~C~r~~C~FAH~~~ELR 194 (381)
+-..|++|.+|.|.+|| .|.|+|-...+..- .-+...|.+| |.|.+..|.|.|.+..|.
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~--~~~~~vC~dflkG~C~r~~C~y~H~~~~l~ 69 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPPHLK 69 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEE--TTEEECCHHHHTTCCCCSSCSSCCCCHHHH
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCcccccc--CCceeehhHhhhccccCCCcceeCChHHHH
Confidence 35689999999999997 99999996542211 3456779998 899988999999886654
No 12
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.01 E-value=1.6e-06 Score=67.02 Aligned_cols=60 Identities=27% Similarity=0.618 Sum_probs=45.3
Q ss_pred ceeccC---CCCCCCCC-CCCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhh
Q 016862 99 KVRKCA---RGRSHDWT-ECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECW 162 (381)
Q Consensus 99 KTr~C~---rg~chd~t-~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~ 162 (381)
|+..|. +|.|.+++ +|+|+|..+.. .-.+ -.+++..|.+|.+|.|.+| +|.|.|...+|+
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~-~~~~--~~~~~~vC~~flkG~C~r~-~C~y~H~~~~L~ 68 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADST-MIDT--NDNTVTVCMDYIKGRCSRE-KCKYFHPPAHLQ 68 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTS-CCBT--TTTEEEBCHHHHTTCCCCT-TCCSBCCCHHHH
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccc-cccc--cCCcceeccccCcCCCCCC-CcCeeCCHHHHh
Confidence 455665 48899898 69999985421 1111 2345889999999999999 999999988875
No 13
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.85 E-value=2.2e-06 Score=70.01 Aligned_cols=58 Identities=34% Similarity=0.832 Sum_probs=46.9
Q ss_pred CCCCcCCccCCCCCCC-CCCCCcCcchhhcCcCCccCcCCCCC--CCCCCcccCCCCCCcccC
Q 016862 135 GTACPDFRKGSCKKGD-ACEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPDQLR 194 (381)
Q Consensus 135 t~lCP~frkG~C~~Gd-~C~FAHg~~El~~HP~~YKTk~Ck~~--g~C~r~~C~FAH~~~ELR 194 (381)
...|++|.+|.|.+|+ .|.|+|-...+..- .-+...|.+| |.|.+..|.|.|.+..|.
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~--~~~~~vC~dflkG~C~r~~Cky~H~~~hl~ 77 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHPPKSCQVE--NGRVIACFDSLKGRCSRENCKYLHPPTHLK 77 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCCCSSSCCB--TTBEEBCHHHHHTCCCCTTCCSBCCCHHHH
T ss_pred hhhchHHhcCCCCCCCCCCCCcCCCcccccc--CCceeeehhhhhCcCCCCCcceecCHHHHH
Confidence 5689999999999998 99999986543221 2357789999 999999999999986554
No 14
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=5.7e-06 Score=68.25 Aligned_cols=63 Identities=25% Similarity=0.514 Sum_probs=48.4
Q ss_pred eccceeccCC---CCCCCCC-CCCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhh
Q 016862 96 YEFKVRKCAR---GRSHDWT-ECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECW 162 (381)
Q Consensus 96 ~~FKTr~C~r---g~chd~t-~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~ 162 (381)
..-|+..|.. |.|.+++ +|.|+|..+.. +.++ ...+...|.+|.+|.|.+| +|.|.|...++.
T Consensus 16 ~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~-~~~~--~~~~~~vC~~flkG~C~r~-~C~y~H~~~~l~ 82 (98)
T 2e5s_A 16 RTDKLEVCREFQRGNCARGETDCRFAHPADST-MIDT--SDNTVTVCMDYIKGRCMRE-KCKYFHPPAHLQ 82 (98)
T ss_dssp CSSEEEBCSHHHHTCCSSHHHHCSSBCCSSCC-SCCT--TTCEEEBCHHHHHTCCCCT-TCCSBCCCHHHH
T ss_pred ChhhhhhhHHHhcCcCCCCCCCCCCcCCchhc-cccc--cCCccccchhhccCCCCCC-CcCccCChHHHH
Confidence 3456777874 8899998 79999996432 2222 2345789999999999999 999999987765
No 15
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.63 E-value=9.5e-06 Score=63.30 Aligned_cols=54 Identities=24% Similarity=0.436 Sum_probs=43.8
Q ss_pred eccceeccCC---CCCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCcc-CCCCCCCCCCCCcCcch
Q 016862 96 YEFKVRKCAR---GRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRK-GSCKKGDACEFAHGVFE 160 (381)
Q Consensus 96 ~~FKTr~C~r---g~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frk-G~C~~Gd~C~FAHg~~E 160 (381)
...|+..|.. |.|.+++.|.|+|.... + ++..|..|.+ |.|.+ ++|.|.|...+
T Consensus 12 ~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~--~--------~~~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 12 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDM--T--------KMSECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp SCCCCSBCHHHHTTCCCCGGGSSSBCSCCT--T--------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CCCcCeeCHHHhcCCCCCCCCCCCcccccc--c--------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence 3467788864 88999999999998532 1 2568999999 99999 99999998654
No 16
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=2.4e-05 Score=61.62 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=26.0
Q ss_pred CccCcCCCCC--CCCCC-cccCCCCCCcccCC
Q 016862 167 RYRTQPCKDG--GGCKR-RVCFFAHTPDQLRI 195 (381)
Q Consensus 167 ~YKTk~Ck~~--g~C~r-~~C~FAH~~~ELR~ 195 (381)
..|+++|+.| |.|++ ..|.|||+.+|||.
T Consensus 17 ~~k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 17 TGYFSICDRYMNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CSCCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred CCCcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence 3488999998 99996 89999999999996
No 17
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.28 E-value=0.00013 Score=58.63 Aligned_cols=60 Identities=25% Similarity=0.457 Sum_probs=45.5
Q ss_pred ccceeccCC---CCCCCCC-CCCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhh
Q 016862 97 EFKVRKCAR---GRSHDWT-ECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECW 162 (381)
Q Consensus 97 ~FKTr~C~r---g~chd~t-~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~ 162 (381)
..|+..|.. |.|.+++ +|.|+|..... ..-.-+...|.+|.+|.|.++ +|.|.|...++.
T Consensus 6 ~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~-----~~~~~~~~vC~dflkG~C~r~-~C~y~H~~~~l~ 69 (83)
T 3d2n_A 6 WLTLEVCREFQRGTCSRPDTECKFAHPSKSC-----QVENGRVIACFDSLKGRCSRE-NCKYLHPPPHLK 69 (83)
T ss_dssp GGEEEBCTTGGGTCCCSCTTTCSSBCCCTTC-----CEETTEEECCHHHHTTCCCCS-SCSSCCCCHHHH
T ss_pred cccchhcHHHhcCCCCCCCCCCCCcCCCccc-----cccCCceeehhHhhhccccCC-CcceeCChHHHH
Confidence 357778875 8899885 99999985321 111233579999999999998 999999987654
No 18
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=96.58 E-value=0.00064 Score=55.41 Aligned_cols=57 Identities=26% Similarity=0.528 Sum_probs=42.2
Q ss_pred ceeccCC---CCCCCCC-CCCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchh
Q 016862 99 KVRKCAR---GRSHDWT-ECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFEC 161 (381)
Q Consensus 99 KTr~C~r---g~chd~t-~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El 161 (381)
|+..|.. |.|.+++ +|.|+|..+.. . ...-+...|-+|.+|.|.++ .|.|.|....+
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~~~-~----v~~~~~~vC~dflkG~C~r~-~Cky~H~~~hl 76 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPKSC-Q----VENGRVIACFDSLKGRCSRE-NCKYLHPPTHL 76 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCSSS-C----CBTTBEEBCHHHHHTCCCCT-TCCSBCCCHHH
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCccc-c----ccCCceeeehhhhhCcCCCC-CcceecCHHHH
Confidence 4556753 7888887 99999985421 0 11223679999999999998 99999997654
No 19
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=95.07 E-value=0.00098 Score=53.66 Aligned_cols=63 Identities=29% Similarity=0.755 Sum_probs=46.1
Q ss_pred eccCCC-CCCCCCCCCCCCCcccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcCcchhhcCcCCccCcCCCCCCCC
Q 016862 101 RKCARG-RSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGC 179 (381)
Q Consensus 101 r~C~rg-~chd~t~CpFAH~~Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~g~C 179 (381)
..|..+ .|.+ .+|+|.|... ..+|++.. .|.+ ..|.|+|-. .+.|+.+..|
T Consensus 10 e~CKf~~~Ctn-~~C~f~Hp~~-------------~~~Cr~g~--~C~~-~~C~f~HP~-----------~~~Crf~~~C 61 (80)
T 2lhn_A 10 EQCKFGTHCTN-KRCKYRHARS-------------HIMCREGA--NCTR-IDCLFGHPI-----------NEDCRFGVNC 61 (80)
Confidence 457554 4676 8999999731 34677664 5777 568999941 3689888899
Q ss_pred CCcccCCCCCCc
Q 016862 180 KRRVCFFAHTPD 191 (381)
Q Consensus 180 ~r~~C~FAH~~~ 191 (381)
.+..|.|.|-..
T Consensus 62 ~n~~C~F~Hp~g 73 (80)
T 2lhn_A 62 KNIYCLFRHPPG 73 (80)
Confidence 999999999543
No 20
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=92.15 E-value=0.018 Score=46.35 Aligned_cols=42 Identities=26% Similarity=0.676 Sum_probs=34.3
Q ss_pred CCCCcCCccCCCCCCCCCCCCcCcchhhcCcCCccCcCCCCCCCCCCcccCCCCC
Q 016862 135 GTACPDFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGGGCKRRVCFFAHT 189 (381)
Q Consensus 135 t~lCP~frkG~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~g~C~r~~C~FAH~ 189 (381)
-+.|+.+. .|.+ ..|.|.|-.. ..+|+.+..|.+..|.|+|-
T Consensus 9 ~e~CKf~~--~Ctn-~~C~f~Hp~~----------~~~Cr~g~~C~~~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGT--HCTN-KRCKYRHARS----------HIMCREGANCTRIDCLFGHP 50 (80)
Confidence 35786666 5888 8999999642 34899999999999999995
No 21
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=87.49 E-value=0.11 Score=48.56 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=22.1
Q ss_pred CCCCcCCccCCCCCCCCCCCCcCc
Q 016862 135 GTACPDFRKGSCKKGDACEFAHGV 158 (381)
Q Consensus 135 t~lCP~frkG~C~~Gd~C~FAHg~ 158 (381)
...|..|.+|.|.+|++|.|.|..
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSC
T ss_pred CeEcCccccCCCCCCCCCCccCCC
Confidence 458999999999999999999985
No 22
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=85.16 E-value=0.18 Score=37.54 Aligned_cols=27 Identities=26% Similarity=0.629 Sum_probs=22.7
Q ss_pred ccCCCCcCCcc-CCCCCCCCCCCCcCcc
Q 016862 133 YSGTACPDFRK-GSCKKGDACEFAHGVF 159 (381)
Q Consensus 133 Yst~lCP~frk-G~C~~Gd~C~FAHg~~ 159 (381)
+.+.+|..|.. |-|++|..|.+.|.+.
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 45789999986 8999999999999863
No 23
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=78.80 E-value=0.72 Score=34.35 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.8
Q ss_pred CccCcCCCCC---CCCC-CcccCCCCCCc
Q 016862 167 RYRTQPCKDG---GGCK-RRVCFFAHTPD 191 (381)
Q Consensus 167 ~YKTk~Ck~~---g~C~-r~~C~FAH~~~ 191 (381)
..+|.+|+.| |.|+ +..|.|.|..+
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCC
Confidence 3789999998 9999 58999999864
No 24
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=77.42 E-value=1.3 Score=41.89 Aligned_cols=42 Identities=26% Similarity=0.589 Sum_probs=35.3
Q ss_pred cCCCCcCCcc-----CCCCCCCCCCCCcCcchhhcCcCCccCcCCCCC--CCCCCcccCCCCCCc
Q 016862 134 SGTACPDFRK-----GSCKKGDACEFAHGVFECWLHPARYRTQPCKDG--GGCKRRVCFFAHTPD 191 (381)
Q Consensus 134 st~lCP~frk-----G~C~~Gd~C~FAHg~~El~~HP~~YKTk~Ck~~--g~C~r~~C~FAH~~~ 191 (381)
-++.|..| | |.|..+++|..-| +|+.| |.|+...|.-.|...
T Consensus 150 LPeiC~~Y-kG~g~~g~C~~~~~C~kLH---------------IC~~Fl~G~C~f~~CkRsH~~~ 198 (229)
T 3u9g_A 150 LPEICKSY-KGEGRKQTCGQPQPCERLH---------------ICEHFTRGNCSYLNCLRSHNLM 198 (229)
T ss_dssp SCCBCTTC-CCSSSCCSCSSSSCCCSBC---------------SCHHHHTTCCCCSSCSSCCCTT
T ss_pred CchHHHHh-CCCCCCCcCCCCCCCccee---------------ccchhhcCCcCCCCccCccCcc
Confidence 48999999 7 4899999999888 68887 888888888888863
No 25
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=57.56 E-value=2.1 Score=40.12 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=4.4
Q ss_pred ccccCCCCCCCCccCCCCcCCccCCCCCCCCCCCCcC
Q 016862 121 EKARRRDPRKYHYSGTACPDFRKGSCKKGDACEFAHG 157 (381)
Q Consensus 121 Ek~RRRdP~~~~Yst~lCP~frkG~C~~Gd~C~FAHg 157 (381)
++..|..|..-.-+..+||.-+ .|.||.+|+|-|-
T Consensus 178 ~~~L~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 212 (223)
T 3v33_A 178 DNFLRKKPLTLEHRKQPCPYGR--KCTYGIKCRFFHP 212 (223)
T ss_dssp HHHTBSCC-----------------------------
T ss_pred HHHhccCCCCcccCCCCCCCCc--ccccCCcceecCC
Confidence 4455666644433566788755 4888888888775
No 26
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=36.50 E-value=7.4 Score=36.41 Aligned_cols=27 Identities=30% Similarity=0.654 Sum_probs=0.0
Q ss_pred eeccceeccCCCC-CCCCCCCCCCCCccc
Q 016862 95 MYEFKVRKCARGR-SHDWTECPYAHPGEK 122 (381)
Q Consensus 95 m~~FKTr~C~rg~-chd~t~CpFAH~~Ek 122 (381)
+-+-|-+.||+|+ |.++.+|-|+|+ |+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 214 (223)
T 3v33_A 187 TLEHRKQPCPYGRKCTYGIKCRFFHP-ER 214 (223)
T ss_dssp -----------------------------
T ss_pred CcccCCCCCCCCcccccCCcceecCC-cc
Confidence 3445678899975 999999999999 53
No 27
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=27.32 E-value=29 Score=32.75 Aligned_cols=23 Identities=26% Similarity=0.752 Sum_probs=20.2
Q ss_pred CCcCCccCCCCCCCCCCCCcCcch
Q 016862 137 ACPDFRKGSCKKGDACEFAHGVFE 160 (381)
Q Consensus 137 lCP~frkG~C~~Gd~C~FAHg~~E 160 (381)
.|+.|.+|.|+. .+|+-+|...+
T Consensus 177 IC~~Fl~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 177 ICEHFTRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp SCHHHHTTCCCC-SSCSSCCCTTS
T ss_pred ccchhhcCCcCC-CCccCccCccC
Confidence 789999999999 79999999643
Done!