BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016863
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QVM|A Chain A, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
pdb|3QVM|B Chain B, The Structure Of Olei00960, A Hydrolase From Oleispira
Antarctica
Length = 282
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Query: 235 DVEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEK 294
++ G G+ ++L HGFG WR + L +Q TV FD G G S L +
Sbjct: 22 NITGGGEKTVLLAHGFGCDQNXWRFXLPELEKQF--TVIVFDYVGSG-QSDLESFSTKRY 78
Query: 295 GSINPYKLETQVAIRGVVLLNASFSREVVPGFARILMRTALGKK 338
S+ Y + + + + L+N S V + T +G +
Sbjct: 79 SSLEGYAKDVEEILVALDLVNVSIIGHSVSSIIAGIASTHVGDR 122
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 210 SEDIPILNLDDTVPDIEMDSGALEQDVEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIG 269
+E+ P+ N ++ E+D L G G ++LVHGFG + W +M LA++
Sbjct: 1 AEEFPVPNGFESAYR-EVDGVKLHYVKGGQGPL-VMLVHGFGQTWYEWHQLMPELAKRF- 57
Query: 270 CTVAAFDRPGWGLTSRLRQKDWEEKGSINPYKLETQVA 307
TV A D PG G + + E+ ++ +KL Q +
Sbjct: 58 -TVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQFS 94
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 210 SEDIPILNLDDTVPDIEMDSGALEQDVEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIG 269
+E+ P+ N ++ E+D L G G ++LVHGFG + W +M LA++
Sbjct: 1 AEEFPVPNGFESAYR-EVDGVKLHYVKGGQGPL-VMLVHGFGQTWYEWHQLMPELAKRF- 57
Query: 270 CTVAAFDRPGWGLTSRLRQKDWEEKGSINPYKLETQVA 307
TV A D PG G + + E+ ++ +KL Q +
Sbjct: 58 -TVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQFS 94
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 210 SEDIPILNLDDTVPDIEMDSGALEQDVEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIG 269
+E+ P+ N ++ E+D L G G ++LVHGFG + W +M LA++
Sbjct: 1 AEEFPVPNGFESAYR-EVDGVKLHYVKGGQGPL-VMLVHGFGQTWYEWHQLMPELAKRF- 57
Query: 270 CTVAAFDRPGWGLTSRLRQKDWEEKGSINPYKLETQVA 307
TV A D PG G + + E+ ++ +KL Q +
Sbjct: 58 -TVIAPDLPGLGQSEPPKTGYSGEQVAVYLHKLARQFS 94
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLR 287
++L+HGF +SWRH + LA G V A D+ G+G +S+ R
Sbjct: 36 VVLLHGFPESWYSWRHQIPALA-GAGYRVVAIDQRGYGRSSKYR 78
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTSRLR 287
++L+HGF +SWRH + LA G V A D+ G+G +S+ R
Sbjct: 30 VVLLHGFPESWYSWRHQIPALA-GAGYRVVAIDQRGYGRSSKYR 72
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 243 GIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
+ L HGF FSWR+ + LA Q G V A D G+G +S
Sbjct: 258 ALCLCHGFPESWFSWRYQIPALA-QAGFRVLAIDMKGYGDSS 298
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 243 GIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
+ L HGF +SWR+ + LA Q G V A D G+G +S
Sbjct: 260 AVCLCHGFPESWYSWRYQIPALA-QAGYRVLAMDMKGYGESS 300
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 243 GIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
+ L HGF +SWR+ + LA Q G V A D G+G +S
Sbjct: 41 AVCLCHGFPESWYSWRYQIPALA-QAGYRVLAMDMKGYGESS 81
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 243 GIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
+ L HGF +SWR+ + LA Q G V A D G+G +S
Sbjct: 56 AVCLCHGFPESWYSWRYQIPALA-QAGYRVLAMDMKGYGESS 96
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 238 GNGQFGIILVHGFGGGVFSWRHV---MGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEK 294
GN Q ++L+HG G G SW + + VLAR V A D+PG+G + + E
Sbjct: 34 GNDQT-VVLLHGGGPGAASWTNFSRNIAVLARHF--HVLAVDQPGYGHSDKR-----AEH 85
Query: 295 GSINPYKLETQVAIRGV 311
G N Y +A++G+
Sbjct: 86 GQFNRY---AAMALKGL 99
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Query: 238 GNGQFGIILVHGFGGGVFSWRHV---MGVLARQIGCTVAAFDRPGWGLTSRLRQKDWEEK 294
GN Q ++L+HG G G SW + + VLAR V A D+PG+G + + E
Sbjct: 54 GNDQT-VVLLHGGGPGAASWTNFSRNIAVLARHF--HVLAVDQPGYGHSDKR-----AEH 105
Query: 295 GSINPYKLETQVAIRGV 311
G N Y +A++G+
Sbjct: 106 GQFNRY---AAMALKGL 119
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
I+ +HGF +SWRH M LA + G A D G+G T+
Sbjct: 34 ILFIHGFPELWYSWRHQMVYLAER-GYRAVAPDLRGYGDTT 73
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
I+ +HGF +SWRH M LA + G A D G+G T+
Sbjct: 34 ILFIHGFPELWYSWRHQMVYLAER-GYRAVAPDLRGYGDTT 73
>pdb|1R3D|A Chain A, Crystal Structure Of Protein Vc1974 From Vibrio Cholerae,
Pfam Abhydrolase
Length = 264
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 244 IILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWG 281
++LVHG G W+ V+ LAR C D PG G
Sbjct: 19 VVLVHGLLGSGADWQPVLSHLAR-TQCAALTLDLPGHG 55
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 236 VEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
V G+G+ I+L HGFG W+H++ L V +D G G T+
Sbjct: 30 VIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDY--RVVLYDNMGAGTTN 76
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 236 VEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
V G+G+ I+L HGFG W+H++ L V +D G G T+
Sbjct: 12 VIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDY--RVVLYDNMGAGTTN 58
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 236 VEGNGQFGIILVHGFGGGVFSWRHVMGVLARQIGCTVAAFDRPGWGLTS 284
V G+G+ I+L HGFG W+H++ L V +D G G T+
Sbjct: 14 VIGSGEATIVLGHGFGTDQSVWKHLVPHLVDDY--RVVLYDNMGAGTTN 60
>pdb|1KUV|A Chain A, X-Ray Crystallographic Studies Of Serotonin
N-Acetyltransferase Catalysis And Inhibition
pdb|1KUX|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
pdb|1KUY|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
Length = 207
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 128 VHYKLCLPGSPPRSLSSTTFLEPKSTCNTPQTAVGRLKLDRQAFSALS 175
+H +PGSP R T + C TP+ A G +++R+AF ++S
Sbjct: 14 LHLPSGIPGSPGRQ-RRHTLPANEFRCLTPEDAAGVFEIEREAFISVS 60
>pdb|1L0C|A Chain A, Investigation Of The Roles Of Catalytic Residues In
Serotonin N- Acetyltransferase
Length = 207
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 128 VHYKLCLPGSPPRSLSSTTFLEPKSTCNTPQTAVGRLKLDRQAFSALS 175
+H +PGSP R T + C TP+ A G +++R+AF ++S
Sbjct: 14 LHLPSGIPGSPGRQ-RRHTLPANEFRCLTPEDAAGVFEIEREAFISVS 60
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
Query: 238 GNGQFGIILVHGFGGGVFSWRHVMGVLARQI------GCTVAAFDRPGWG 281
G G ++L+HG G G W + +R I G V D PGWG
Sbjct: 33 GQGDETVVLLHGSGPGATGWAN----FSRNIDPLVEAGYRVILLDCPGWG 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,992,481
Number of Sequences: 62578
Number of extensions: 443164
Number of successful extensions: 931
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 35
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)