BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016864
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/361 (57%), Positives = 263/361 (72%), Gaps = 1/361 (0%)
Query: 1 MATVMQKIKDIEDEMARTQKNXXXXXXXXXXXXXXXXXXXXXXXPTSKXXXXXXXXXFDV 60
M+T ++KIK IEDEMARTQKN S FDV
Sbjct: 8 MSTTVEKIKAIEDEMARTQKNKATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDV 67
Query: 61 TKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLP 120
++G + VG VGFPSVGKSTLL+KLTGT SE A YEFTTL +PGVI Y+GAKIQ+LDLP
Sbjct: 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLP 127
Query: 121 GIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNL 180
GII+GAKDG+GRG+QVI+ ARTCN + I+LD KP+ HK++IEKELEG GIRLNK PP++
Sbjct: 128 GIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDI 187
Query: 181 TFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEG-SR 239
+KK+KGGI+ T+TV T+L D ++A+ SEYRI++A+I R DAT DDLIDV+E SR
Sbjct: 188 LIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSR 247
Query: 240 IYMPCIYVINKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLEKIWEYLNLTRIYTKP 299
YMP IYV+NKID +++EELE+L ++P+ P+S+ +WNLD LL+ +W+ LNL RIYTKP
Sbjct: 248 RYMPAIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKP 307
Query: 300 KGMNPDYEDPVILSSKKRTVEDFCERIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELED 359
KG PD+ DPV+L S + +V+DFC +IHK +V F+ ALV+GSS KH+PQ VG H LED
Sbjct: 308 KGQIPDFTDPVVLRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILED 367
Query: 360 E 360
E
Sbjct: 368 E 368
>pdb|2EKI|A Chain A, Solution Structures Of The Tgs Domain Of Human
Developmentally-Regulated Gtp-Binding Protein 1
Length = 93
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 289 YLNLTRIYTKPKGMNPDYEDPVILSSKKRTVEDFCERIHKDMVKQFKYALVWGSSAKHKP 348
YL L RIYTKPKG PDY PV+L + TVEDFC +IHK+++K+FKYALVWG S KH P
Sbjct: 8 YLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNP 67
Query: 349 QRVGKEHELEDE 360
Q+VGK+H LEDE
Sbjct: 68 QKVGKDHTLEDE 79
>pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein
pdb|1LNZ|B Chain B, Structure Of The Obg Gtp-Binding Protein
Length = 342
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVI-TYRGAKIQLLDLPGIIEGA 126
VGLVGFPSVGKSTLL+ ++ ++A Y FTTL G + T G DLPG+IEGA
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGXVETDDGRSFVXADLPGLIEGA 220
Query: 127 KDGKGRGRQVISTARTCNCILIVLD-----AIKPITHKRLIEKELEGFGIRLNKQPPNLT 181
G G G Q + I+ V+D P I +EL + +RL ++P +
Sbjct: 221 HQGVGLGHQFLRHIERTRVIVHVIDXSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 280
Query: 182 FRKKD 186
K D
Sbjct: 281 ANKXD 285
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 2/121 (1%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVI-TYRGAKIQLLDLPGIIEGA 126
VGLVG+P+ GKS+LL +T ++A Y FTTL+ GV+ + L D+PGIIEGA
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 219
Query: 127 KDGKGRGRQVISTARTCNCILIVLDAI-KPITHKRLIEKELEGFGIRLNKQPPNLTFRKK 185
+GKG G + + +L VLDA +P+ + KE+ + L ++P + K
Sbjct: 220 SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 279
Query: 186 D 186
D
Sbjct: 280 D 280
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPG 121
+V L G P+VGK++L N LTGT VA++ T+ GV TY+G I L+DLPG
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPG 121
+V L G P+VGK++L N LTGT VA++ T+ GV TY+G I L+DLPG
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPG 121
+V L G P+VGK++L N LTGT VA++ T+ GV TY+G I L+DLPG
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPG 61
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 33/132 (25%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAK-------------- 113
VG+VG P+VGKSTL N LT + A+Y F T+ GV+ +
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 114 -------IQLLDLPGIIEGAKDGKGRG-------RQVISTARTCNC-----ILIVLDAIK 154
++ +D+ G+++GA G+G G R+V + A C ++ V+ +
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVD 123
Query: 155 PITHKRLIEKEL 166
P+ ++E EL
Sbjct: 124 PLEDAEVVETEL 135
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 33/132 (25%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAK-------------- 113
VG+VG P+VGKSTL N LT + A+Y F T+ GV+ +
Sbjct: 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERV 63
Query: 114 -------IQLLDLPGIIEGAKDGKGRG-------RQVISTARTCNC-----ILIVLDAIK 154
++ +D+ G+++GA G+G G R+V + A C ++ V+ +
Sbjct: 64 PPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVD 123
Query: 155 PITHKRLIEKEL 166
P+ ++E EL
Sbjct: 124 PLEDAEVVETEL 135
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 17/97 (17%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKI------------ 114
+ G+VG P+VGKSTL N LT E A+Y F T+ GV+ ++
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERI 63
Query: 115 -----QLLDLPGIIEGAKDGKGRGRQVISTARTCNCI 146
+ +D+ G++ GA G+G G + ++ R + I
Sbjct: 64 LPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAI 100
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 24/109 (22%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVI-------------------- 107
+G+VG P+VGKST + T E+A+Y FTT+ GV
Sbjct: 3 IGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNY 62
Query: 108 TYRGA----KIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDA 152
YR ++ +D+ G++ GA +G+G G + + R + ++ V+DA
Sbjct: 63 EYRNGLALIPVKXVDVAGLVPGAHEGRGLGNKFLDDLRXASALIHVVDA 111
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 310 VILSSKKRTVEDFCERIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELE 358
V L K T D ++H D+ K F YA+ +A+ K +RVG+++EL+
Sbjct: 342 VFLXKKGSTPRDLAFKVHTDLGKGFLYAI----NARTK-RRVGEDYELQ 385
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 19/111 (17%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTL------TCIPG-----VITYRG---- 111
++G+VG P+VGKST N LT + + ++ F T+ +P + Y
Sbjct: 24 KIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASK 83
Query: 112 --AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIK--PITH 158
A + ++D+ G+++GA +G+G G +S C+ I + A + ITH
Sbjct: 84 IPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH 134
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI 122
V LVG P+VGK+T+ N LTG V ++ T+ G++ YR + ++DLPGI
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI 122
+ L+G P+VGKST+ N LTG + ++ T+ G Y G K +++DLPG+
Sbjct: 6 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 61
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI 122
+ L+G P+VGKST+ N LTG + ++ T+ G Y G K +++DLPG+
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 64
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI 122
+ L+G P+VGKST+ N LTG + ++ T+ G Y G K +++DLPG+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI 122
+ L+G P+VGKST+ N LTG + ++ T+ G Y G K +++DLPG+
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGV 60
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAK 127
V + G P+VGKSTLL LT E+ASY FTT G + Q++D PG+++
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPI 229
Query: 128 DGKGR-GRQVISTARTC-NCILIVLD 151
+ +Q I R N I+ + D
Sbjct: 230 SERNEIEKQAILALRYLGNLIIYIFD 255
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPG 121
VGL+G P+ GK+TL N+LTG V ++ T+ G+ ++ L+DLPG
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQVTLVDLPG 59
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 70 LVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG 129
L G P+VGKS+ +N ++ +V SY FTT G ++ K Q++D PG+++ A +
Sbjct: 34 LSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFEN 93
Query: 130 KG--RGRQVISTARTCNCILIVLD 151
+ + + A IL ++D
Sbjct: 94 RNTIEMTTITALAHINGVILFIID 117
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPG 121
+GL+G P+ GK+TL N+LTG+ V ++ T+ G + ++ L+DLPG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPG 121
+GL+G P+ GK+TL N+LTG+ V ++ T+ G + ++ L+DLPG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPG 121
+GL+G P+ GK+TL N+LTG+ V ++ T+ G + ++ L+DLPG
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAK 127
+G+VG+ + GK++L N LTG +V + FTT++ I KI L+D G I G
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP 241
Query: 128 DGKGRGRQV-ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIR----LNKQPPNLTF 182
V +S A+ + +++V+D+ + LIE F I ++ +P +T
Sbjct: 242 PQIVDAFFVTLSEAKYSDALILVIDS--TFSENLLIETLQSSFEILREIGVSGKPILVTL 299
Query: 183 RKKDK 187
K DK
Sbjct: 300 NKIDK 304
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 68 VGLVGFPSVGKSTLLNKLTGT-FSEVASYEFTTLTCIPGVITYRG-AKIQLLDLPGIIEG 125
V +VG P+VGKSTLLN L GT S ++ TT + GV A+I LD PGI E
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE- 71
Query: 126 AKDGKGRGRQVISTART----CNCILIVLDA 152
K G ++ A+ + IL ++DA
Sbjct: 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDA 102
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 22/82 (26%)
Query: 231 LIDVIEGSR-----IYM--------PCIYVINKIDQITLEE--LEILD-------KLPHY 268
+ID EG R IY P I VINKID+I + L ++D +L
Sbjct: 99 MIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158
Query: 269 CPVSAHLEWNLDGLLEKIWEYL 290
P+SA NLD L++ I +YL
Sbjct: 159 VPISALKGANLDELVKTILKYL 180
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 68 VGLVGFPSVGKSTLLNKLTGT-FSEVASYEFTTLTCIPGVITYRG-AKIQLLDLPGIIEG 125
V +VG P+VGKSTLLN L GT S ++ TT + GV A+I LD PGI E
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE- 70
Query: 126 AKDGKGRGRQVISTART----CNCILIVLDA 152
K G ++ A+ + IL ++DA
Sbjct: 71 PKKSDVLGHSMVEIAKQSLEEADVILFMIDA 101
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 22/82 (26%)
Query: 231 LIDVIEGSR-----IYM--------PCIYVINKIDQITLEE--LEILD-------KLPHY 268
+ID EG R IY P I VINKID+I + L ++D +L
Sbjct: 98 MIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 157
Query: 269 CPVSAHLEWNLDGLLEKIWEYL 290
P+SA NLD L++ I +YL
Sbjct: 158 VPISALKGANLDELVKTILKYL 179
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 68 VGLVGFPSVGKSTLLNKLTGT-FSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGA 126
V +VG P+VGKSTLLN L G + ++ TT + G++T +I +D PG+ +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 69
Query: 127 KD-GKGRGRQVISTARTCNCILIVLDAIKPIT 157
G+ ++V N ++ V+D P T
Sbjct: 70 DALGEFMDQEVYEALADVNAVVWVVDLRHPPT 101
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAK 127
+G+VG+ + GK++L N LTG +V + FTT++ I KI L+D I G
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVSFIRGIP 241
Query: 128 DGKGRGRQV-ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIR----LNKQPPNLTF 182
V +S A+ + +++V+D+ + LIE F I ++ +P +T
Sbjct: 242 PQIVDAFFVTLSEAKYSDALILVIDS--TFSENLLIETLQSSFEILREIGVSGKPILVTL 299
Query: 183 RKKDK 187
K DK
Sbjct: 300 NKIDK 304
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVAS-YEFTTLTCIPGVITYRGAKIQLLDLPGIIEG 125
+V +VG P+VGKS+LLN + + + + TT + + G +Q+LD GI E
Sbjct: 226 KVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRET 285
Query: 126 A----KDGKGRGRQVISTARTCNCILIVLDA 152
+ K G R RQ A T + +L+ +DA
Sbjct: 286 SDQVEKIGVERSRQ---AANTADLVLLTIDA 313
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAK 127
+G+VG+ + GK++L N LTG +V + FTT++ I KI L+D I G
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVPFIRGIP 241
Query: 128 DGKGRGRQV-ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIR----LNKQPPNLTF 182
V +S A+ + +++V+D+ + LIE F I ++ +P +T
Sbjct: 242 PQIVDAFFVTLSEAKYSDALILVIDS--TFSENLLIETLQSSFEILREIGVSGKPILVTL 299
Query: 183 RKKDK 187
K DK
Sbjct: 300 NKIDK 304
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVAS-YEFTTLTCIPGVITYRGAKIQLLDLPGIIEG 125
R+ +VG P+VGKSTLLN+L + + TT I I RG +++D G+
Sbjct: 245 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 304
Query: 126 AKD-----GKGRGRQVISTARTCNCILIVLDAIKPI 156
D G R Q I A + +L VLDA P+
Sbjct: 305 TNDLVERLGIERTLQEIEKA---DIVLFVLDASSPL 337
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 16/162 (9%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEF-TTLTCIPGVITYRGAKIQLLDLPGIIEGA 126
+ +VG P+VGKSTLLNKL G + S + TT I G+ T + +D PG+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 127 KDGKGR--GRQVISTARTCNCILIVLDAIKPITHKRLIEKEL-EGFG---IRLNKQP--- 177
K R + S+ ++ V++ + ++ +L EG + +NK
Sbjct: 68 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127
Query: 178 ------PNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEY 213
P+L F ++ T L++DT+ AI ++
Sbjct: 128 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKH 169
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 16/162 (9%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEF-TTLTCIPGVITYRGAKIQLLDLPGIIEGA 126
+ +VG P+VGKSTLLNKL G + S + TT I G+ T + +D PG+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70
Query: 127 KDGKGR--GRQVISTARTCNCILIVLDAIKPITHKRLIEKEL-EGFG---IRLNKQP--- 177
K R + S+ ++ V++ + ++ +L EG + +NK
Sbjct: 71 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130
Query: 178 ------PNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEY 213
P+L F ++ T L++DT+ AI ++
Sbjct: 131 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKH 172
>pdb|1NI3|A Chain A, Structure Of The Schizosaccharomyces Pombe Ychf Gtpase
Length = 392
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 67 RVGLVGFPSVGKSTLLNKLT-GTFSEVASYEFTTL------TCIPG------VITYR--- 110
+ G+VG P+VGKST +T A+Y + T+ +P Y+
Sbjct: 22 KTGIVGXPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 81
Query: 111 --GAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAI 153
A + + D+ G+ +GA G G G +S R + I V+ A
Sbjct: 82 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAF 126
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 70 LVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG 129
L+G P+ GK+TL N LT V ++ T+ G I++ DLPG+ +
Sbjct: 6 LIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65
Query: 130 KGRGRQVISTARTC-----NCILIVLDAIKPITHKRLIEKELE 167
+G + A++ +CI+ V+DA H L + E
Sbjct: 66 EGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQLFE 108
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSE-VASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGA 126
V +VG P+VGKSTL NKL V E T + + + G +L+D G+ +
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 63
Query: 127 KD--GKGRGRQVISTARTCNCILIVLDAIKPITHK 159
+D + ++ R + +L V+D + IT +
Sbjct: 64 QDIISQKXKEVTLNXIREADLVLFVVDGKRGITKE 98
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Query: 67 RVGLVGFPSVGKSTLLNK-LTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI--- 122
+V +VG P+VGKSTL N L + V+ TT + + G K +D G+
Sbjct: 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 241
Query: 123 --IEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHK 159
+E K +V+ + + ++IVLDA + IT +
Sbjct: 242 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ 280
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEG 125
+RV +VG P+ GKST++NKL G + + I G KI LD PGI+
Sbjct: 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKI--LDTPGILY- 156
Query: 126 AKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFG 170
+ + S +L+ ++ I +R+ E+ E F
Sbjct: 157 --------KNIFSEDLAAKLLLVGSLPVERIEDQRIFERAFEIFA 193
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 12/62 (19%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR-----GAKIQLLDLPG 121
R ++G P+VGKSTL+N+L A PG+ T + G +++LLD PG
Sbjct: 122 RALIIGIPNVGKSTLINRL-------AKKNIAKTGDRPGITTSQQWVKVGKELELLDTPG 174
Query: 122 II 123
I+
Sbjct: 175 IL 176
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI 122
+ + L+G P+ GK++L N +TG V ++ T+ G++ + +++ DLPGI
Sbjct: 4 TEIALIGNPASGKTSLFNLITGHNQRVGNWPGVTVERKSGLVK-KNKDLEIQDLPGI 59
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI 122
+ + L+G P+ GK++L N +TG V ++ T+ G++ + +++ DLPGI
Sbjct: 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVK-KNKDLEIQDLPGI 59
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI 122
+ + L+G P+ GK++L N +TG V ++ T+ G++ + +++ DLPGI
Sbjct: 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVK-KNKDLEIQDLPGI 59
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI 122
+ + L+G P+ GK++L N +TG V ++ T+ G++ + +++ DLPGI
Sbjct: 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVK-KNKDLEIQDLPGI 59
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSE-VASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEG 125
+V +VG P+VGKS+L N+L S VA T GV+ + L+D G+ G
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62
Query: 126 AKDGKGRGRQVISTARTCNCILIVLDAIKPITH 158
K K +V +L +D +T
Sbjct: 63 DKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQ 95
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI 122
+ + L+G P+ GK++L N +TG V ++ ++ G++ + +++ DLPGI
Sbjct: 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVSVERKSGLVK-KNKDLEIQDLPGI 59
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI 122
+ + L+G P+ GK++L N +TG V ++ + G++ + +++ DLPGI
Sbjct: 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVAVERKSGLVK-KNKDLEIQDLPGI 59
>pdb|2QM7|A Chain A, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
pdb|2QM7|B Chain B, Meab, A Bacterial Homolog Of Mmaa, Bound To Gdp
Length = 337
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIP 104
RVG+ G P VGKST ++ L G+ A ++ L P
Sbjct: 57 RVGITGVPGVGKSTTIDAL-GSLLTAAGHKVAVLAVDP 93
>pdb|2QM8|A Chain A, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
pdb|2QM8|B Chain B, Meab, A Bacterial Homolog Of Mmaa, In The Nucleotide Free
Form
Length = 337
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIP 104
RVG+ G P VGKST ++ L G+ A ++ L P
Sbjct: 57 RVGITGVPGVGKSTTIDAL-GSLLTAAGHKVAVLAVDP 93
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 19/103 (18%)
Query: 70 LVGFPSVGKSTLLNKLTG----TFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEG 125
L+G P+VGKS+L+N + G S VA TT + TY + ++D G+
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAG---TTRDAVDTSFTYNQQEFVIVDTAGM--- 253
Query: 126 AKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEG 168
+ +G+ +T + VL A+K I ++ L+G
Sbjct: 254 ----RKKGKVYETTEKYS-----VLRALKAIDRSEVVAVVLDG 287
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 64 GDSRVGLVGFPSVGKSTLLNKLTG 87
G V +VG P+VGKST+ N++ G
Sbjct: 22 GKPVVAIVGRPNVGKSTIFNRIAG 45
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 64 GDSRVGLVGFPSVGKSTLLNKLTG 87
G V +VG P+VGKST+ N++ G
Sbjct: 2 GKPVVAIVGRPNVGKSTIFNRIAG 25
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 19/103 (18%)
Query: 70 LVGFPSVGKSTLLNKLTG----TFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEG 125
L+G P+VGKS+L+N G S VA TT + TY + ++D G
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAG---TTRDAVDTSFTYNQQEFVIVDTAGX--- 233
Query: 126 AKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEG 168
+ +G+ +T + VL A+K I ++ L+G
Sbjct: 234 ----RKKGKVYETTEKYS-----VLRALKAIDRSEVVAVVLDG 267
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 63 SGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTC 102
S SR+ ++G GKSTL+N LTG + +T C
Sbjct: 697 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENC 736
>pdb|3U0R|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 507
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 254 ITLEELEILDKLPHYCPVSAHLEWNLDGLLEKIWEYLNL 292
I LE L++L ++ +C LE NL L +K+ EY+ L
Sbjct: 285 IQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPL 323
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 63 SGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTC 102
S SR+ ++G GKSTL+N LTG + +T C
Sbjct: 691 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENC 730
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 63 SGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTC 102
S SR+ ++G GKSTL+N LTG + +T C
Sbjct: 697 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENC 736
>pdb|1LW7|A Chain A, Nadr Protein From Haemophilus Influenzae
Length = 365
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEF 97
V ++G S GKS L+NKL F+ +++E+
Sbjct: 173 VAILGGESSGKSVLVNKLAAVFNTTSAWEY 202
>pdb|3V6A|A Chain A, Helical Repeat Structure Of Apoptosis Inhibitor 5 Reveals
Protein- Protein Interaction Modules
Length = 474
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 254 ITLEELEILDKLPHYCPVSAHLEWNLDGLLEKIWEYLNL 292
I LE L++L ++ +C LE NL L +K+ EY+ L
Sbjct: 302 IQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPL 340
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVAS-YEFTTLTCIPGVITYRGAKIQLLDLPGIIEG 125
+V + G P+ GKS+LLN L G + + + TT + I G + ++D G+ E
Sbjct: 9 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 68
Query: 126 AKD 128
+ +
Sbjct: 69 SDE 71
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVAS-YEFTTLTCIPGVITYRGAKIQLLDLPGIIEG 125
+V + G P+ GKS+LLN L G + + + TT + I G + ++D G+ E
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREA 65
Query: 126 AKD 128
+ +
Sbjct: 66 SDE 68
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 61 TKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEF 97
T+ + +G+VG GK+TL LTG +++ S E
Sbjct: 7 TRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEEL 43
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 67 RVGLVGFPSVGKSTLLNKLTGTFSEVAS-YEFTTLTCIPGVITYRGAKIQLLDLPGIIEG 125
+V + G P+ GKS+LLN L G + + + TT + I G + ++D G+ E
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 65
Query: 126 AKD 128
+ +
Sbjct: 66 SDE 68
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 229 DDLIDVIEGSRIYMPCIYVINKIDQITLEELEILDKLPHYCPVSAHLE 276
DD ++EG + + N I Q ++E+L+ ++CP AHLE
Sbjct: 17 DDKAGLVEGQNYTV----LANPIPQQQAGKVEVLEFFGYFCPHCAHLE 60
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPG-----VITYRGAKIQLLD 118
G V +VG +VGKST +N+ FS+ TT + PG + + L D
Sbjct: 159 GGKDVYVVGCTNVGKSTFINRXIKEFSDETENVITT-SHFPGTTLDLIDIPLDEESSLYD 217
Query: 119 LPGIIEGAKDGKGRGRQ 135
PGII + G+Q
Sbjct: 218 TPGIINHHQXAHYVGKQ 234
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 70 LVGFPSVGKSTLLNKLTGTFSEVASY-EFTTLTCIPGVITYRGAKIQLLDLPGIIEGAK- 127
+ G P+ GKSTLLN L G + S+ TT I + +L D G+ E +
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEE 297
Query: 128 ---DGKGRGRQVISTARTCNCILIVLD 151
+G R R ++ A + IL +LD
Sbjct: 298 IEHEGIRRSRMKMAEA---DLILYLLD 321
>pdb|2RAQ|A Chain A, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
pdb|2RAQ|B Chain B, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
pdb|2RAQ|C Chain C, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
pdb|2RAQ|D Chain D, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
pdb|2RAQ|E Chain E, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
pdb|2RAQ|F Chain F, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
pdb|2RAQ|G Chain G, Crystal Structure Of The Mth889 Protein From
Methanothermobacter Thermautotrophicus. Northeast
Structural Genomics Consortium Target Tt205
Length = 97
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDL 203
I IVLD +KP H+ +I + + + N+T + DK N T+ +LD
Sbjct: 5 GLIRIVLDILKP--HEPIIPEYAKYLSELRGVEGVNITLXEIDKETENIKVTIQGNDLDF 62
Query: 204 DTVKAICSEY--RIHNAD 219
D + Y IH+ D
Sbjct: 63 DEITRAIESYGGSIHSVD 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,262,932
Number of Sequences: 62578
Number of extensions: 425317
Number of successful extensions: 1561
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1489
Number of HSP's gapped (non-prelim): 85
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)