Query 016864
Match_columns 381
No_of_seqs 329 out of 3750
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:29:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016864.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016864hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1163 DRG Predicted GTPase [ 100.0 4.5E-78 9.9E-83 546.4 31.7 365 1-368 1-365 (365)
2 KOG1486 GTP-binding protein DR 100.0 2E-64 4.3E-69 440.9 31.8 364 2-368 1-364 (364)
3 KOG1487 GTP-binding protein DR 100.0 6.8E-58 1.5E-62 401.4 22.7 356 4-367 2-357 (358)
4 PTZ00258 GTP-binding protein; 100.0 8.4E-40 1.8E-44 314.1 11.2 291 64-367 20-386 (390)
5 PRK09602 translation-associate 100.0 3.5E-39 7.6E-44 313.3 15.2 292 66-368 2-395 (396)
6 cd01896 DRG The developmentall 100.0 9.7E-37 2.1E-41 278.0 20.3 232 67-298 2-233 (233)
7 PRK09601 GTP-binding protein Y 100.0 1E-36 2.2E-41 289.5 11.7 285 66-366 3-361 (364)
8 COG0012 Predicted GTPase, prob 100.0 6.6E-37 1.4E-41 286.0 2.3 290 66-364 3-367 (372)
9 KOG1491 Predicted GTP-binding 100.0 1E-32 2.2E-37 251.9 9.3 292 66-365 21-387 (391)
10 TIGR00092 GTP-binding protein 100.0 1.9E-30 4.1E-35 246.7 8.2 284 66-366 3-365 (368)
11 cd01899 Ygr210 Ygr210 subfamil 99.9 9.2E-28 2E-32 227.0 8.9 220 68-291 1-269 (318)
12 COG2262 HflX GTPases [General 99.9 2.5E-26 5.4E-31 216.5 11.9 195 27-291 158-356 (411)
13 PF02421 FeoB_N: Ferrous iron 99.9 1.8E-25 3.9E-30 189.1 9.1 147 66-286 1-156 (156)
14 KOG1489 Predicted GTP-binding 99.9 2E-25 4.4E-30 202.6 9.9 166 58-289 189-365 (366)
15 COG0536 Obg Predicted GTPase [ 99.9 4.1E-25 8.9E-30 203.1 9.7 168 60-293 154-335 (369)
16 TIGR03156 GTP_HflX GTP-binding 99.9 3.5E-24 7.7E-29 206.0 9.6 192 28-289 156-350 (351)
17 PRK12299 obgE GTPase CgtA; Rev 99.9 1.2E-23 2.7E-28 200.7 13.2 166 60-291 153-328 (335)
18 PRK12296 obgE GTPase CgtA; Rev 99.9 1E-23 2.2E-28 208.6 12.6 178 58-292 152-341 (500)
19 COG0486 ThdF Predicted GTPase 99.9 4.4E-24 9.5E-29 204.8 8.3 159 59-292 212-377 (454)
20 PRK12298 obgE GTPase CgtA; Rev 99.9 1.8E-23 3.8E-28 203.3 12.4 162 65-292 159-334 (390)
21 COG1160 Predicted GTPases [Gen 99.9 9.9E-24 2.1E-28 201.9 8.8 156 66-291 4-165 (444)
22 TIGR02729 Obg_CgtA Obg family 99.9 4.5E-23 9.7E-28 196.7 12.8 165 60-290 152-328 (329)
23 PRK12297 obgE GTPase CgtA; Rev 99.9 4.6E-23 1E-27 201.5 13.2 161 65-291 158-327 (424)
24 COG1159 Era GTPase [General fu 99.9 6.2E-23 1.4E-27 186.6 9.4 155 67-292 8-173 (298)
25 COG0488 Uup ATPase components 99.9 3.1E-22 6.7E-27 200.4 15.1 222 3-291 255-511 (530)
26 cd01900 YchF YchF subfamily. 99.9 3.3E-23 7.1E-28 191.5 5.8 204 68-282 1-244 (274)
27 COG1160 Predicted GTPases [Gen 99.9 3.1E-22 6.7E-27 191.6 10.6 203 65-340 178-426 (444)
28 PRK11058 GTPase HflX; Provisio 99.9 4.7E-22 1E-26 195.5 12.1 218 4-291 122-362 (426)
29 TIGR00436 era GTP-binding prot 99.9 3.5E-21 7.6E-26 179.7 13.5 154 67-291 2-164 (270)
30 cd01898 Obg Obg subfamily. Th 99.8 4.5E-21 9.8E-26 165.9 11.0 160 67-289 2-169 (170)
31 cd01878 HflX HflX subfamily. 99.8 6.9E-21 1.5E-25 170.3 10.6 192 28-289 8-203 (204)
32 cd01881 Obg_like The Obg-like 99.8 2.7E-20 5.8E-25 161.8 10.8 162 70-289 1-175 (176)
33 COG1084 Predicted GTPase [Gene 99.8 4.6E-20 1E-24 169.3 12.0 159 65-289 168-334 (346)
34 PRK05291 trmE tRNA modificatio 99.8 3.4E-20 7.3E-25 184.3 9.5 183 29-291 186-370 (449)
35 COG0370 FeoB Fe2+ transport sy 99.8 4.9E-19 1.1E-23 176.9 11.9 154 66-292 4-165 (653)
36 cd01897 NOG NOG1 is a nucleola 99.8 1E-18 2.2E-23 151.0 12.1 159 66-290 1-167 (168)
37 KOG1191 Mitochondrial GTPase [ 99.8 2.6E-19 5.6E-24 171.6 7.7 212 62-341 266-496 (531)
38 PRK15494 era GTPase Era; Provi 99.8 6.7E-19 1.5E-23 169.1 10.6 157 66-292 53-217 (339)
39 PRK00089 era GTPase Era; Revie 99.8 2.1E-18 4.6E-23 162.9 10.9 154 67-291 7-171 (292)
40 KOG0410 Predicted GTP binding 99.8 4.6E-19 9.9E-24 161.6 5.5 162 64-290 177-340 (410)
41 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2.5E-18 5.3E-23 170.2 9.6 92 65-156 203-296 (442)
42 cd04171 SelB SelB subfamily. 99.7 7.8E-18 1.7E-22 144.4 11.4 145 67-288 2-163 (164)
43 TIGR03594 GTPase_EngA ribosome 99.7 3.8E-18 8.3E-23 169.7 9.9 156 67-292 1-161 (429)
44 cd01666 TGS_DRG_C TGS_DRG_C: 99.7 5E-18 1.1E-22 125.1 7.4 75 292-367 1-75 (75)
45 PRK03003 GTP-binding protein D 99.7 1.2E-17 2.6E-22 167.6 12.8 156 65-290 211-381 (472)
46 cd04164 trmE TrmE (MnmE, ThdF, 99.7 6.2E-18 1.3E-22 143.7 9.1 153 66-290 2-156 (157)
47 cd01894 EngA1 EngA1 subfamily. 99.7 4.5E-18 9.8E-23 144.7 8.3 151 69-289 1-156 (157)
48 PRK03003 GTP-binding protein D 99.7 7E-18 1.5E-22 169.3 10.4 157 64-291 37-199 (472)
49 cd01879 FeoB Ferrous iron tran 99.7 1.2E-17 2.7E-22 142.3 10.2 148 70-290 1-156 (158)
50 PRK00093 GTP-binding protein D 99.7 1.9E-17 4.2E-22 165.0 12.6 154 64-288 172-341 (435)
51 PRK09554 feoB ferrous iron tra 99.7 1.5E-17 3.1E-22 174.2 12.0 153 66-290 4-167 (772)
52 KOG1423 Ras-like GTPase ERA [C 99.7 1E-17 2.3E-22 151.8 8.3 90 66-155 73-168 (379)
53 TIGR03594 GTPase_EngA ribosome 99.7 3.5E-17 7.6E-22 162.8 12.7 156 64-289 171-342 (429)
54 PRK00093 GTP-binding protein D 99.7 1.9E-17 4.2E-22 165.0 10.1 155 66-290 2-161 (435)
55 PRK09518 bifunctional cytidyla 99.7 4.5E-17 9.8E-22 170.9 12.2 157 64-290 449-620 (712)
56 cd01895 EngA2 EngA2 subfamily. 99.7 8E-17 1.7E-21 139.0 11.6 154 66-289 3-173 (174)
57 PRK09518 bifunctional cytidyla 99.7 3.7E-17 8.1E-22 171.5 11.0 157 65-291 275-436 (712)
58 COG1126 GlnQ ABC-type polar am 99.7 5.6E-17 1.2E-21 141.2 10.1 143 54-212 19-178 (240)
59 cd04160 Arfrp1 Arfrp1 subfamil 99.7 5.9E-17 1.3E-21 139.7 9.2 150 67-288 1-166 (167)
60 COG0488 Uup ATPase components 99.7 5E-17 1.1E-21 163.0 9.9 174 56-297 20-232 (530)
61 PF01926 MMR_HSR1: 50S ribosom 99.7 2.5E-17 5.3E-22 133.8 6.1 89 67-155 1-92 (116)
62 PF00009 GTP_EFTU: Elongation 99.7 4.7E-17 1E-21 143.7 7.9 148 66-291 4-187 (188)
63 cd04163 Era Era subfamily. Er 99.7 1.3E-16 2.9E-21 136.4 10.2 153 66-289 4-167 (168)
64 cd01861 Rab6 Rab6 subfamily. 99.7 2.6E-16 5.6E-21 134.8 11.6 150 67-289 2-160 (161)
65 cd01889 SelB_euk SelB subfamil 99.7 1.4E-16 3.1E-21 141.1 10.1 148 67-291 2-186 (192)
66 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 2.7E-16 5.9E-21 135.5 10.5 148 66-290 1-165 (168)
67 cd00881 GTP_translation_factor 99.7 3.7E-16 8E-21 137.2 11.0 148 67-291 1-187 (189)
68 KOG0927 Predicted transporter 99.7 7E-16 1.5E-20 149.7 13.7 225 2-291 323-581 (614)
69 cd04142 RRP22 RRP22 subfamily. 99.7 7.6E-16 1.7E-20 137.1 12.9 161 67-290 2-173 (198)
70 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.3E-16 2.8E-21 143.2 7.5 82 67-155 1-113 (208)
71 PRK04213 GTP-binding protein; 99.7 4.3E-16 9.3E-21 138.9 10.8 54 65-122 9-62 (201)
72 cd01868 Rab11_like Rab11-like. 99.7 8.5E-16 1.8E-20 132.3 11.6 152 66-290 4-164 (165)
73 smart00178 SAR Sar1p-like memb 99.7 1.1E-15 2.5E-20 134.4 12.1 149 66-289 18-183 (184)
74 TIGR00231 small_GTP small GTP- 99.6 7.7E-16 1.7E-20 130.0 10.6 150 66-286 2-159 (161)
75 PRK10636 putative ABC transpor 99.6 9E-16 2E-20 159.4 13.2 217 4-287 252-498 (638)
76 COG1136 SalX ABC-type antimicr 99.6 9.8E-16 2.1E-20 136.6 11.3 145 55-212 23-184 (226)
77 TIGR00437 feoB ferrous iron tr 99.6 5E-16 1.1E-20 159.1 10.8 147 72-290 1-154 (591)
78 cd04157 Arl6 Arl6 subfamily. 99.6 6.3E-16 1.4E-20 132.4 9.7 82 67-156 1-82 (162)
79 cd00879 Sar1 Sar1 subfamily. 99.6 9.3E-16 2E-20 135.4 11.0 80 66-155 20-99 (190)
80 COG1116 TauB ABC-type nitrate/ 99.6 1.3E-15 2.9E-20 136.1 11.6 133 55-209 21-169 (248)
81 cd04158 ARD1 ARD1 subfamily. 99.6 1.9E-15 4.2E-20 131.0 12.0 150 67-291 1-161 (169)
82 cd04151 Arl1 Arl1 subfamily. 99.6 9.5E-16 2.1E-20 131.2 9.9 147 67-288 1-157 (158)
83 PRK00454 engB GTP-binding prot 99.6 1.1E-15 2.5E-20 135.3 10.7 154 65-291 24-194 (196)
84 cd00880 Era_like Era (E. coli 99.6 1.1E-15 2.5E-20 129.1 9.5 150 70-289 1-162 (163)
85 cd01864 Rab19 Rab19 subfamily. 99.6 2.1E-15 4.5E-20 130.0 11.2 151 66-289 4-164 (165)
86 cd01888 eIF2_gamma eIF2-gamma 99.6 1.5E-15 3.3E-20 135.8 10.3 148 67-291 2-199 (203)
87 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 3.3E-15 7.1E-20 128.8 11.9 152 66-290 3-163 (166)
88 COG0218 Predicted GTPase [Gene 99.6 2E-15 4.4E-20 130.7 10.3 155 64-291 23-197 (200)
89 TIGR03598 GTPase_YsxC ribosome 99.6 1.1E-15 2.3E-20 134.0 8.5 89 64-155 17-113 (179)
90 cd01867 Rab8_Rab10_Rab13_like 99.6 3.2E-15 7E-20 129.2 11.4 152 66-290 4-164 (167)
91 cd01890 LepA LepA subfamily. 99.6 3E-15 6.5E-20 130.6 11.1 149 66-291 1-177 (179)
92 cd04154 Arl2 Arl2 subfamily. 99.6 2.2E-15 4.7E-20 131.1 10.0 148 66-288 15-172 (173)
93 PRK15467 ethanolamine utilizat 99.6 1.1E-15 2.3E-20 131.2 7.9 140 66-291 2-147 (158)
94 smart00175 RAB Rab subfamily o 99.6 4.7E-15 1E-19 127.1 11.8 151 67-290 2-161 (164)
95 cd01865 Rab3 Rab3 subfamily. 99.6 4.7E-15 1E-19 127.9 11.8 152 66-290 2-162 (165)
96 cd04109 Rab28 Rab28 subfamily. 99.6 5.8E-15 1.3E-19 133.2 12.8 155 67-291 2-166 (215)
97 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 3.1E-15 6.6E-20 130.4 10.3 148 66-288 16-173 (174)
98 cd04145 M_R_Ras_like M-Ras/R-R 99.6 9.4E-15 2E-19 125.4 13.2 152 66-290 3-163 (164)
99 cd01866 Rab2 Rab2 subfamily. 99.6 6.1E-15 1.3E-19 127.6 12.0 152 66-290 5-165 (168)
100 cd04112 Rab26 Rab26 subfamily. 99.6 4.9E-15 1.1E-19 131.1 11.4 153 67-292 2-164 (191)
101 cd01862 Rab7 Rab7 subfamily. 99.6 8.3E-15 1.8E-19 126.7 12.5 155 67-290 2-166 (172)
102 cd04119 RJL RJL (RabJ-Like) su 99.6 1.1E-14 2.3E-19 125.2 12.9 156 67-290 2-166 (168)
103 cd04155 Arl3 Arl3 subfamily. 99.6 3.6E-15 7.9E-20 129.4 10.0 81 65-155 14-94 (173)
104 cd04159 Arl10_like Arl10-like 99.6 3.4E-15 7.3E-20 126.7 9.1 147 68-288 2-158 (159)
105 cd01863 Rab18 Rab18 subfamily. 99.6 1.4E-14 2.9E-19 124.1 12.9 151 67-289 2-160 (161)
106 cd04138 H_N_K_Ras_like H-Ras/N 99.6 2E-14 4.3E-19 122.8 13.3 152 66-290 2-161 (162)
107 cd04106 Rab23_lke Rab23-like s 99.6 9.8E-15 2.1E-19 125.1 11.4 148 67-288 2-160 (162)
108 cd01884 EF_Tu EF-Tu subfamily. 99.6 5.9E-15 1.3E-19 130.9 10.0 83 66-155 3-101 (195)
109 cd04149 Arf6 Arf6 subfamily. 99.6 9.2E-15 2E-19 126.7 11.0 148 66-288 10-167 (168)
110 cd04136 Rap_like Rap-like subf 99.6 1.6E-14 3.4E-19 123.9 12.3 152 66-290 2-162 (163)
111 cd00878 Arf_Arl Arf (ADP-ribos 99.6 8.4E-15 1.8E-19 125.1 10.4 147 67-288 1-157 (158)
112 cd04124 RabL2 RabL2 subfamily. 99.6 2.1E-14 4.5E-19 123.4 12.9 150 67-290 2-157 (161)
113 cd00154 Rab Rab family. Rab G 99.6 1.4E-14 3.1E-19 122.7 11.7 148 67-287 2-158 (159)
114 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 1.5E-14 3.2E-19 129.1 12.3 155 67-290 2-167 (201)
115 TIGR00475 selB selenocysteine- 99.6 7.7E-15 1.7E-19 150.2 11.8 147 67-291 2-166 (581)
116 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 1.7E-14 3.8E-19 126.7 12.4 152 66-290 4-169 (183)
117 smart00173 RAS Ras subfamily o 99.6 1.4E-14 3.1E-19 124.4 11.5 151 67-290 2-161 (164)
118 COG3845 ABC-type uncharacteriz 99.6 1.1E-14 2.4E-19 140.7 11.8 162 55-253 22-202 (501)
119 cd01891 TypA_BipA TypA (tyrosi 99.6 9.8E-15 2.1E-19 129.5 10.6 83 66-155 3-101 (194)
120 cd01860 Rab5_related Rab5-rela 99.6 2.2E-14 4.8E-19 123.0 12.1 152 66-290 2-162 (163)
121 cd04114 Rab30 Rab30 subfamily. 99.6 3.7E-14 8E-19 122.4 13.3 151 66-289 8-167 (169)
122 cd04113 Rab4 Rab4 subfamily. 99.6 2.3E-14 4.9E-19 122.8 11.7 151 66-289 1-160 (161)
123 cd04144 Ras2 Ras2 subfamily. 99.6 1.7E-14 3.6E-19 127.6 11.1 154 67-291 1-163 (190)
124 COG1135 AbcC ABC-type metal io 99.6 1.3E-14 2.8E-19 132.7 10.4 145 55-213 24-184 (339)
125 cd00876 Ras Ras family. The R 99.6 1.8E-14 3.9E-19 122.8 10.7 150 67-289 1-159 (160)
126 cd04175 Rap1 Rap1 subgroup. T 99.6 4E-14 8.6E-19 121.8 12.9 152 66-290 2-162 (164)
127 cd04156 ARLTS1 ARLTS1 subfamil 99.6 1.3E-14 2.9E-19 124.1 9.8 147 67-288 1-159 (160)
128 KOG1490 GTP-binding protein CR 99.6 7.2E-15 1.6E-19 141.2 8.6 61 66-126 169-229 (620)
129 cd04147 Ras_dva Ras-dva subfam 99.6 2.9E-14 6.3E-19 126.9 11.9 152 67-291 1-163 (198)
130 smart00177 ARF ARF-like small 99.6 3E-14 6.5E-19 124.3 11.7 150 66-290 14-173 (175)
131 PLN00223 ADP-ribosylation fact 99.6 3.4E-14 7.5E-19 124.7 12.0 150 66-290 18-177 (181)
132 cd01876 YihA_EngB The YihA (En 99.6 1.5E-14 3.2E-19 124.0 9.4 149 68-289 2-169 (170)
133 cd04139 RalA_RalB RalA/RalB su 99.6 4.2E-14 9E-19 121.1 12.0 151 67-290 2-161 (164)
134 cd04127 Rab27A Rab27a subfamil 99.6 4.6E-14 1E-18 123.3 12.3 153 66-290 5-176 (180)
135 PRK11147 ABC transporter ATPas 99.6 1.6E-14 3.4E-19 150.3 10.9 166 57-288 337-509 (635)
136 PRK12739 elongation factor G; 99.6 1.1E-14 2.3E-19 152.6 9.7 111 65-187 8-137 (691)
137 cd01892 Miro2 Miro2 subfamily. 99.5 4.9E-14 1.1E-18 122.3 12.2 150 66-290 5-165 (169)
138 cd04123 Rab21 Rab21 subfamily. 99.5 7.6E-14 1.7E-18 119.1 13.3 150 67-289 2-160 (162)
139 cd04118 Rab24 Rab24 subfamily. 99.5 4.4E-14 9.6E-19 125.0 12.0 150 67-290 2-165 (193)
140 PRK12317 elongation factor 1-a 99.5 1.2E-14 2.6E-19 144.4 9.1 82 66-154 7-119 (425)
141 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 2.1E-14 4.5E-19 127.7 9.7 90 66-155 1-96 (196)
142 cd04137 RheB Rheb (Ras Homolog 99.5 5.8E-14 1.3E-18 122.7 12.4 153 66-291 2-163 (180)
143 COG1129 MglA ABC-type sugar tr 99.5 2.7E-14 5.8E-19 140.4 11.1 193 54-288 25-244 (500)
144 cd04110 Rab35 Rab35 subfamily. 99.5 5.9E-14 1.3E-18 125.1 12.3 151 66-290 7-166 (199)
145 cd00157 Rho Rho (Ras homology) 99.5 4.3E-14 9.2E-19 122.1 11.1 83 66-156 1-85 (171)
146 cd04122 Rab14 Rab14 subfamily. 99.5 6.3E-14 1.4E-18 120.9 12.0 151 66-290 3-163 (166)
147 cd04150 Arf1_5_like Arf1-Arf5- 99.5 3.6E-14 7.8E-19 121.8 10.3 79 67-155 2-80 (159)
148 cd01893 Miro1 Miro1 subfamily. 99.5 4.3E-14 9.3E-19 122.0 10.8 149 67-290 2-163 (166)
149 cd04161 Arl2l1_Arl13_like Arl2 99.5 2.5E-14 5.4E-19 123.8 9.2 80 67-156 1-80 (167)
150 smart00174 RHO Rho (Ras homolo 99.5 6E-14 1.3E-18 121.8 11.7 81 68-156 1-83 (174)
151 TIGR00484 EF-G translation elo 99.5 2.1E-14 4.6E-19 150.4 10.4 111 65-187 10-139 (689)
152 TIGR02528 EutP ethanolamine ut 99.5 1E-14 2.3E-19 122.4 6.4 132 67-286 2-140 (142)
153 TIGR00487 IF-2 translation ini 99.5 3.7E-14 8.1E-19 144.7 11.7 148 64-288 86-247 (587)
154 PRK05306 infB translation init 99.5 2.7E-14 5.8E-19 149.2 10.8 148 64-289 289-450 (787)
155 cd04125 RabA_like RabA-like su 99.5 7.8E-14 1.7E-18 123.0 12.2 151 67-290 2-161 (188)
156 cd04132 Rho4_like Rho4-like su 99.5 6.9E-14 1.5E-18 123.1 11.9 151 67-291 2-167 (187)
157 cd01883 EF1_alpha Eukaryotic e 99.5 1.3E-14 2.9E-19 131.2 7.3 82 67-155 1-113 (219)
158 PLN03108 Rab family protein; P 99.5 7.4E-14 1.6E-18 125.5 12.0 152 66-290 7-167 (210)
159 cd04176 Rap2 Rap2 subgroup. T 99.5 9.7E-14 2.1E-18 119.2 12.2 152 66-290 2-162 (163)
160 COG3840 ThiQ ABC-type thiamine 99.5 9.6E-14 2.1E-18 117.7 11.6 139 56-211 16-170 (231)
161 COG0411 LivG ABC-type branched 99.5 2.1E-14 4.6E-19 127.5 8.0 141 55-211 22-190 (250)
162 cd04120 Rab12 Rab12 subfamily. 99.5 9.9E-14 2.1E-18 123.8 12.4 150 67-290 2-162 (202)
163 cd04146 RERG_RasL11_like RERG/ 99.5 5.5E-14 1.2E-18 121.1 10.4 153 67-290 1-163 (165)
164 PLN03110 Rab GTPase; Provision 99.5 8.8E-14 1.9E-18 125.6 12.2 153 66-291 13-174 (216)
165 cd04101 RabL4 RabL4 (Rab-like4 99.5 1.1E-13 2.4E-18 118.8 12.1 150 67-290 2-163 (164)
166 PRK10512 selenocysteinyl-tRNA- 99.5 4.8E-14 1E-18 144.9 11.4 147 67-291 2-166 (614)
167 PRK00007 elongation factor G; 99.5 1.9E-14 4.1E-19 150.7 8.5 112 65-188 10-140 (693)
168 PTZ00133 ADP-ribosylation fact 99.5 1E-13 2.3E-18 121.7 11.8 80 66-155 18-97 (182)
169 cd01874 Cdc42 Cdc42 subfamily. 99.5 1.5E-13 3.2E-18 120.0 12.3 83 66-156 2-86 (175)
170 cd04130 Wrch_1 Wrch-1 subfamil 99.5 1.6E-13 3.6E-18 119.2 12.6 82 67-156 2-85 (173)
171 cd04121 Rab40 Rab40 subfamily. 99.5 1.5E-13 3.2E-18 121.4 12.3 150 66-290 7-166 (189)
172 cd04117 Rab15 Rab15 subfamily. 99.5 1.9E-13 4.1E-18 117.5 12.3 150 67-289 2-160 (161)
173 COG3638 ABC-type phosphate/pho 99.5 6.8E-14 1.5E-18 123.5 9.6 144 55-212 22-189 (258)
174 PRK09866 hypothetical protein; 99.5 1.1E-13 2.4E-18 138.3 12.2 58 27-100 47-105 (741)
175 CHL00189 infB translation init 99.5 5.6E-14 1.2E-18 145.5 10.5 150 64-290 243-409 (742)
176 cd04143 Rhes_like Rhes_like su 99.5 1.3E-13 2.9E-18 126.7 11.9 161 67-292 2-172 (247)
177 cd04140 ARHI_like ARHI subfami 99.5 2.5E-13 5.4E-18 117.1 12.9 152 66-288 2-162 (165)
178 cd04135 Tc10 TC10 subfamily. 99.5 2.2E-13 4.8E-18 118.2 12.7 82 67-156 2-85 (174)
179 cd04116 Rab9 Rab9 subfamily. 99.5 2.8E-13 6.1E-18 117.1 13.2 155 66-289 6-169 (170)
180 cd04115 Rab33B_Rab33A Rab33B/R 99.5 3.6E-13 7.7E-18 116.7 13.1 154 66-290 3-168 (170)
181 CHL00071 tufA elongation facto 99.5 9.6E-14 2.1E-18 137.0 10.4 83 66-155 13-111 (409)
182 cd00877 Ran Ran (Ras-related n 99.5 1.3E-13 2.8E-18 119.2 10.1 148 67-290 2-158 (166)
183 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 2.9E-13 6.2E-18 117.5 12.2 151 67-290 2-164 (170)
184 cd01886 EF-G Elongation factor 99.5 1.2E-13 2.6E-18 128.5 10.4 97 67-170 1-116 (270)
185 COG2884 FtsE Predicted ATPase 99.5 1.9E-13 4.2E-18 116.7 10.5 143 55-211 20-178 (223)
186 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 3.4E-13 7.3E-18 117.3 12.5 152 66-290 3-163 (172)
187 cd04168 TetM_like Tet(M)-like 99.5 1.6E-13 3.4E-18 125.5 10.8 97 67-170 1-116 (237)
188 COG1121 ZnuC ABC-type Mn/Zn tr 99.5 1.6E-13 3.5E-18 124.3 10.7 116 55-191 22-151 (254)
189 cd04126 Rab20 Rab20 subfamily. 99.5 2.7E-13 6E-18 122.4 12.2 80 67-156 2-81 (220)
190 cd04177 RSR1 RSR1 subgroup. R 99.5 3.6E-13 7.8E-18 116.4 12.2 152 66-290 2-163 (168)
191 cd01870 RhoA_like RhoA-like su 99.5 3.7E-13 8E-18 116.9 12.3 82 66-155 2-85 (175)
192 PTZ00369 Ras-like protein; Pro 99.5 4.2E-13 9E-18 118.5 12.6 153 66-291 6-167 (189)
193 COG1131 CcmA ABC-type multidru 99.5 1.1E-13 2.4E-18 130.3 9.4 134 55-208 23-174 (293)
194 cd04148 RGK RGK subfamily. Th 99.5 8E-13 1.7E-17 119.7 14.7 153 67-293 2-165 (221)
195 COG1120 FepC ABC-type cobalami 99.5 1.3E-13 2.9E-18 125.4 9.4 134 55-211 20-179 (258)
196 PLN03073 ABC transporter F fam 99.5 2.1E-13 4.6E-18 142.6 12.3 164 57-287 527-695 (718)
197 PLN03118 Rab family protein; P 99.5 4.3E-13 9.3E-18 120.6 12.6 154 66-291 15-177 (211)
198 COG3839 MalK ABC-type sugar tr 99.5 1.3E-13 2.8E-18 130.2 9.3 138 55-211 21-174 (338)
199 PRK12736 elongation factor Tu; 99.5 1.6E-13 3.5E-18 134.7 10.4 84 65-155 12-111 (394)
200 TIGR00960 3a0501s02 Type II (G 99.5 1.1E-13 2.4E-18 124.8 8.6 140 57-208 21-176 (216)
201 cd01871 Rac1_like Rac1-like su 99.5 5.6E-13 1.2E-17 116.2 12.7 83 66-156 2-86 (174)
202 cd04134 Rho3 Rho3 subfamily. 99.5 4.7E-13 1E-17 118.2 12.3 82 67-156 2-85 (189)
203 PF00025 Arf: ADP-ribosylation 99.5 4.9E-13 1.1E-17 116.7 12.2 149 66-289 15-174 (175)
204 PRK10218 GTP-binding protein; 99.5 3.5E-13 7.6E-18 137.8 13.0 84 65-155 5-104 (607)
205 cd04111 Rab39 Rab39 subfamily. 99.5 5.1E-13 1.1E-17 120.1 12.6 153 66-290 3-165 (211)
206 COG1137 YhbG ABC-type (unclass 99.5 4.9E-14 1.1E-18 121.2 5.3 143 55-213 22-185 (243)
207 PRK00741 prfC peptide chain re 99.5 1.6E-13 3.5E-18 138.6 9.9 110 66-187 11-143 (526)
208 TIGR02673 FtsE cell division A 99.5 1.6E-13 3.5E-18 123.6 8.9 139 57-207 20-174 (214)
209 cd04129 Rho2 Rho2 subfamily. 99.5 6.2E-13 1.3E-17 117.2 12.5 151 66-290 2-172 (187)
210 TIGR01393 lepA GTP-binding pro 99.5 3.6E-13 7.7E-18 138.2 12.1 149 66-291 4-180 (595)
211 PLN03127 Elongation factor Tu; 99.5 2.3E-13 5E-18 135.1 9.9 83 66-155 62-160 (447)
212 COG1122 CbiO ABC-type cobalt t 99.4 3.9E-13 8.5E-18 121.9 10.3 137 59-211 24-179 (235)
213 COG1125 OpuBA ABC-type proline 99.4 7.8E-13 1.7E-17 117.9 11.6 137 57-208 19-173 (309)
214 cd03292 ABC_FtsE_transporter F 99.4 3.5E-13 7.5E-18 121.4 9.6 142 57-210 19-176 (214)
215 TIGR01394 TypA_BipA GTP-bindin 99.4 4.1E-13 8.8E-18 137.4 11.2 83 66-155 2-100 (594)
216 cd04128 Spg1 Spg1p. Spg1p (se 99.4 8.2E-13 1.8E-17 116.0 11.7 82 67-156 2-86 (182)
217 cd04165 GTPBP1_like GTPBP1-lik 99.4 5.8E-13 1.3E-17 120.6 10.9 82 67-155 1-122 (224)
218 cd03261 ABC_Org_Solvent_Resist 99.4 3.5E-13 7.6E-18 123.3 9.5 123 57-191 18-148 (235)
219 COG4181 Predicted ABC-type tra 99.4 2.9E-13 6.3E-18 113.7 7.9 142 55-209 28-185 (228)
220 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 3E-13 6.5E-18 116.7 8.4 81 67-156 1-81 (164)
221 TIGR01188 drrA daunorubicin re 99.4 4.1E-13 9E-18 127.4 9.9 139 55-211 11-165 (302)
222 PF10662 PduV-EutP: Ethanolami 99.4 2.8E-13 6.1E-18 112.4 7.5 134 66-287 2-142 (143)
223 PRK12735 elongation factor Tu; 99.4 4.1E-13 8.9E-18 131.9 9.9 83 66-155 13-111 (396)
224 TIGR03680 eif2g_arch translati 99.4 2.7E-13 5.9E-18 133.6 8.6 149 66-291 5-196 (406)
225 COG4152 ABC-type uncharacteriz 99.4 7.5E-13 1.6E-17 117.3 10.3 165 55-288 20-202 (300)
226 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.4 3.4E-13 7.3E-18 121.9 8.5 141 57-208 22-178 (218)
227 PRK13536 nodulation factor exp 99.4 6E-13 1.3E-17 127.9 10.6 138 55-210 59-212 (340)
228 TIGR00503 prfC peptide chain r 99.4 2E-13 4.3E-18 138.0 7.6 110 66-187 12-144 (527)
229 PRK15064 ABC transporter ATP-b 99.4 7.1E-13 1.5E-17 135.4 11.7 165 57-287 337-506 (530)
230 cd03235 ABC_Metallic_Cations A 99.4 4.9E-13 1.1E-17 120.4 9.3 134 55-209 17-171 (213)
231 PRK10636 putative ABC transpor 99.4 2E-13 4.3E-18 142.0 7.7 180 57-289 19-219 (638)
232 PRK00049 elongation factor Tu; 99.4 6.6E-13 1.4E-17 130.4 10.9 83 66-155 13-111 (396)
233 cd03225 ABC_cobalt_CbiO_domain 99.4 4.6E-13 9.9E-18 120.4 8.9 120 57-191 19-146 (211)
234 cd03294 ABC_Pro_Gly_Bertaine T 99.4 5.9E-13 1.3E-17 124.2 10.0 141 55-208 42-198 (269)
235 cd03259 ABC_Carb_Solutes_like 99.4 4.5E-13 9.7E-18 120.6 8.8 133 57-206 18-166 (213)
236 cd03262 ABC_HisP_GlnQ_permease 99.4 5.6E-13 1.2E-17 120.0 9.3 139 55-208 18-173 (213)
237 COG3842 PotA ABC-type spermidi 99.4 8.6E-13 1.9E-17 125.3 10.9 139 55-212 23-178 (352)
238 cd04133 Rop_like Rop subfamily 99.4 1.9E-12 4.1E-17 113.1 12.2 151 66-290 2-172 (176)
239 PLN03071 GTP-binding nuclear p 99.4 1.6E-12 3.4E-17 117.7 12.0 152 65-290 13-171 (219)
240 COG4598 HisP ABC-type histidin 99.4 1.8E-12 3.8E-17 109.8 11.3 145 55-212 24-194 (256)
241 PRK10908 cell division protein 99.4 5.5E-13 1.2E-17 120.9 9.0 139 57-207 20-174 (222)
242 cd04131 Rnd Rnd subfamily. Th 99.4 2.3E-12 5E-17 112.8 12.6 83 66-156 2-86 (178)
243 PRK10070 glycine betaine trans 99.4 6.2E-13 1.3E-17 130.0 9.8 145 57-212 46-206 (400)
244 cd03265 ABC_DrrA DrrA is the A 99.4 6.3E-13 1.4E-17 120.3 9.3 135 58-208 19-169 (220)
245 TIGR01288 nodI ATP-binding ABC 99.4 6.3E-13 1.4E-17 126.2 9.6 137 55-209 22-174 (303)
246 TIGR00491 aIF-2 translation in 99.4 6.9E-13 1.5E-17 135.3 10.5 82 66-155 5-105 (590)
247 cd04938 TGS_Obg-like TGS_Obg-l 99.4 3.2E-13 6.9E-18 100.2 5.9 69 292-367 1-76 (76)
248 PRK10584 putative ABC transpor 99.4 1.1E-12 2.4E-17 119.4 10.6 140 57-207 28-183 (228)
249 TIGR02211 LolD_lipo_ex lipopro 99.4 1.1E-12 2.3E-17 118.9 10.5 142 57-209 23-180 (221)
250 cd03293 ABC_NrtD_SsuB_transpor 99.4 9E-13 1.9E-17 119.3 9.9 131 55-208 22-169 (220)
251 PRK13351 elongation factor G; 99.4 2.6E-13 5.7E-18 142.4 7.3 111 65-187 8-137 (687)
252 PRK05433 GTP-binding protein L 99.4 9.8E-13 2.1E-17 135.1 11.3 150 65-291 7-184 (600)
253 TIGR02314 ABC_MetN D-methionin 99.4 4.6E-13 9.9E-18 128.6 8.3 144 55-212 23-182 (343)
254 cd04170 EF-G_bact Elongation f 99.4 4.6E-13 9.9E-18 124.9 8.0 97 67-170 1-116 (268)
255 cd03296 ABC_CysA_sulfate_impor 99.4 9.3E-13 2E-17 120.8 9.7 134 58-208 21-174 (239)
256 cd03297 ABC_ModC_molybdenum_tr 99.4 7.5E-13 1.6E-17 119.3 8.8 138 57-207 16-168 (214)
257 TIGR01166 cbiO cobalt transpor 99.4 3E-12 6.5E-17 113.2 12.4 143 55-212 10-169 (190)
258 cd03226 ABC_cobalt_CbiO_domain 99.4 5.4E-13 1.2E-17 119.4 7.7 132 55-208 18-164 (205)
259 PRK11247 ssuB aliphatic sulfon 99.4 9.2E-13 2E-17 122.0 9.4 113 57-191 30-145 (257)
260 COG4175 ProV ABC-type proline/ 99.4 1.1E-12 2.3E-17 120.4 9.5 138 55-205 46-199 (386)
261 PRK05506 bifunctional sulfate 99.4 4.3E-13 9.4E-18 139.4 7.9 83 66-155 25-140 (632)
262 PRK11264 putative amino-acid A 99.4 1.2E-12 2.6E-17 120.8 9.8 124 55-191 21-156 (250)
263 cd03301 ABC_MalK_N The N-termi 99.4 1.4E-12 2.9E-17 117.5 9.9 135 55-208 18-168 (213)
264 cd03219 ABC_Mj1267_LivG_branch 99.4 7.9E-13 1.7E-17 120.9 8.5 136 55-206 18-179 (236)
265 TIGR00483 EF-1_alpha translati 99.4 7.8E-13 1.7E-17 131.4 9.0 83 66-155 8-121 (426)
266 cd03269 ABC_putative_ATPase Th 99.4 1.1E-12 2.4E-17 117.8 9.2 129 58-207 19-165 (210)
267 cd03218 ABC_YhbG The ABC trans 99.4 1.3E-12 2.8E-17 119.2 9.7 138 55-208 18-171 (232)
268 cd03256 ABC_PhnC_transporter A 99.4 1.6E-12 3.4E-17 119.3 10.3 141 55-209 19-183 (241)
269 PRK11629 lolD lipoprotein tran 99.4 1.5E-12 3.4E-17 118.8 10.2 145 57-212 27-187 (233)
270 TIGR01184 ntrCD nitrate transp 99.4 1.3E-12 2.7E-17 119.2 9.5 113 56-191 4-126 (230)
271 cd03266 ABC_NatA_sodium_export 99.4 1.3E-12 2.8E-17 118.0 9.5 138 56-209 22-175 (218)
272 cd00882 Ras_like_GTPase Ras-li 99.4 8.7E-13 1.9E-17 109.9 7.8 146 70-287 1-156 (157)
273 cd04104 p47_IIGP_like p47 (47- 99.4 1.5E-12 3.3E-17 115.8 9.7 82 66-151 2-89 (197)
274 PRK11248 tauB taurine transpor 99.4 9.3E-13 2E-17 121.9 8.6 114 57-191 19-140 (255)
275 TIGR00485 EF-Tu translation el 99.4 1.1E-12 2.3E-17 129.0 9.5 84 65-155 12-111 (394)
276 PRK13537 nodulation ABC transp 99.4 1E-12 2.2E-17 124.8 9.0 137 55-209 25-177 (306)
277 cd03298 ABC_ThiQ_thiamine_tran 99.4 1.8E-12 3.8E-17 116.6 10.2 134 57-207 16-165 (211)
278 PRK04000 translation initiatio 99.4 8.8E-13 1.9E-17 130.0 8.8 150 65-291 9-201 (411)
279 cd04103 Centaurin_gamma Centau 99.4 2.6E-12 5.7E-17 110.1 10.7 144 67-289 2-157 (158)
280 TIGR02142 modC_ABC molybdenum 99.4 2.1E-12 4.7E-17 125.0 11.0 144 57-212 15-173 (354)
281 PRK13641 cbiO cobalt transport 99.4 1.6E-12 3.6E-17 122.4 9.9 144 55-211 25-186 (287)
282 PRK11153 metN DL-methionine tr 99.4 1.4E-12 3.1E-17 125.7 9.7 144 55-212 23-182 (343)
283 TIGR01186 proV glycine betaine 99.4 1.1E-12 2.3E-17 126.8 8.7 145 55-212 11-171 (363)
284 PRK11650 ugpC glycerol-3-phosp 99.4 2.6E-12 5.6E-17 124.3 11.4 139 55-212 22-176 (356)
285 TIGR02034 CysN sulfate adenyly 99.4 8.8E-13 1.9E-17 129.9 8.2 82 67-155 2-116 (406)
286 PRK11432 fbpC ferric transport 99.4 1.5E-12 3.3E-17 125.6 9.5 138 58-212 25-178 (351)
287 cd01875 RhoG RhoG subfamily. 99.4 6.9E-12 1.5E-16 111.0 13.0 83 66-156 4-88 (191)
288 TIGR02315 ABC_phnC phosphonate 99.4 1.5E-12 3.3E-17 119.6 9.1 140 55-208 20-183 (243)
289 PRK11144 modC molybdate transp 99.4 2.2E-12 4.7E-17 124.9 10.6 144 57-212 16-170 (352)
290 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 6.1E-12 1.3E-16 110.4 12.5 83 66-156 6-90 (182)
291 PRK11831 putative ABC transpor 99.4 1.8E-12 3.9E-17 121.0 9.6 139 57-207 25-180 (269)
292 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 6.4E-12 1.4E-16 114.2 12.9 83 66-156 14-98 (232)
293 PRK11147 ABC transporter ATPas 99.4 8.2E-13 1.8E-17 137.5 8.1 177 57-289 21-226 (635)
294 cd03231 ABC_CcmA_heme_exporter 99.4 2.1E-12 4.6E-17 115.2 9.7 136 55-209 18-164 (201)
295 TIGR03265 PhnT2 putative 2-ami 99.4 1.9E-12 4E-17 125.2 9.8 138 58-212 23-176 (353)
296 PRK11124 artP arginine transpo 99.4 1.9E-12 4.1E-17 118.9 9.4 140 57-207 20-178 (242)
297 PRK10851 sulfate/thiosulfate t 99.4 2.1E-12 4.5E-17 124.8 10.0 139 57-212 20-178 (353)
298 PRK11000 maltose/maltodextrin 99.4 2E-12 4.3E-17 125.8 10.0 138 55-211 21-174 (369)
299 PRK10895 lipopolysaccharide AB 99.4 1.7E-12 3.7E-17 119.2 8.9 121 55-191 21-149 (241)
300 PRK13543 cytochrome c biogenes 99.4 1.6E-12 3.6E-17 117.1 8.5 132 55-207 29-174 (214)
301 PRK05124 cysN sulfate adenylyl 99.4 8.7E-13 1.9E-17 132.1 7.4 84 65-155 27-143 (474)
302 cd03263 ABC_subfamily_A The AB 99.4 2.5E-12 5.4E-17 116.4 9.6 136 55-208 20-171 (220)
303 cd03268 ABC_BcrA_bacitracin_re 99.4 1.5E-12 3.4E-17 116.7 8.1 133 55-208 18-164 (208)
304 PRK09536 btuD corrinoid ABC tr 99.4 1.7E-12 3.8E-17 126.9 9.1 140 57-211 21-180 (402)
305 COG1124 DppF ABC-type dipeptid 99.4 2.5E-12 5.5E-17 114.3 9.0 141 55-211 25-182 (252)
306 PRK13538 cytochrome c biogenes 99.4 3.3E-12 7.2E-17 114.3 10.0 136 55-209 19-168 (204)
307 cd03258 ABC_MetN_methionine_tr 99.4 2E-12 4.4E-17 118.0 8.8 122 58-191 24-152 (233)
308 cd03264 ABC_drug_resistance_li 99.4 2E-12 4.3E-17 116.3 8.5 135 55-208 18-168 (211)
309 TIGR03522 GldA_ABC_ATP gliding 99.4 1.8E-12 3.9E-17 122.9 8.5 138 55-210 20-173 (301)
310 TIGR03608 L_ocin_972_ABC putat 99.4 4.3E-12 9.3E-17 113.6 10.3 145 55-212 16-176 (206)
311 PRK09493 glnQ glutamine ABC tr 99.4 2.9E-12 6.2E-17 117.6 9.4 138 55-207 19-173 (240)
312 COG1118 CysA ABC-type sulfate/ 99.4 6.3E-12 1.4E-16 115.1 11.3 135 58-206 21-173 (345)
313 TIGR03258 PhnT 2-aminoethylpho 99.4 3.2E-12 7E-17 123.7 10.1 139 55-212 23-179 (362)
314 PRK10771 thiQ thiamine transpo 99.3 3.2E-12 7E-17 116.6 9.5 134 57-207 17-166 (232)
315 TIGR02324 CP_lyasePhnL phospho 99.3 2.5E-12 5.5E-17 116.7 8.7 124 57-191 26-161 (224)
316 cd03224 ABC_TM1139_LivF_branch 99.3 3.1E-12 6.7E-17 115.9 9.2 135 58-206 19-168 (222)
317 PLN03126 Elongation factor Tu; 99.3 4E-12 8.7E-17 127.0 10.7 84 65-155 81-180 (478)
318 PRK15439 autoinducer 2 ABC tra 99.3 2E-12 4.4E-17 131.4 8.7 142 57-212 29-182 (510)
319 PRK10762 D-ribose transporter 99.3 1.8E-12 3.9E-17 131.5 8.2 141 57-211 22-182 (501)
320 TIGR03411 urea_trans_UrtD urea 99.3 3.3E-12 7.1E-17 117.3 9.1 137 57-207 20-180 (242)
321 PRK13540 cytochrome c biogenes 99.3 3.7E-12 8E-17 113.6 9.2 137 57-209 19-166 (200)
322 PRK11288 araG L-arabinose tran 99.3 2.6E-12 5.7E-17 130.4 9.3 177 57-288 271-468 (501)
323 PRK10619 histidine/lysine/argi 99.3 4.1E-12 8.8E-17 117.8 9.8 140 55-207 23-189 (257)
324 PTZ00327 eukaryotic translatio 99.3 2.7E-12 5.8E-17 127.4 9.1 151 64-291 33-233 (460)
325 TIGR03415 ABC_choXWV_ATP choli 99.3 3.2E-12 7E-17 124.1 9.3 145 55-212 42-206 (382)
326 PRK09452 potA putrescine/sperm 99.3 7.2E-12 1.6E-16 121.8 11.6 139 55-212 32-186 (375)
327 PRK13649 cbiO cobalt transport 99.3 5.3E-12 1.2E-16 118.5 10.3 143 57-210 25-185 (280)
328 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.3 1.6E-11 3.4E-16 111.1 12.9 83 66-156 2-86 (222)
329 cd03237 ABC_RNaseL_inhibitor_d 99.3 2.8E-12 6E-17 118.0 8.1 119 65-209 25-154 (246)
330 cd03257 ABC_NikE_OppD_transpor 99.3 3.4E-12 7.3E-17 116.1 8.6 123 55-191 23-157 (228)
331 cd04169 RF3 RF3 subfamily. Pe 99.3 2.9E-12 6.3E-17 119.1 8.3 83 66-155 3-107 (267)
332 TIGR01277 thiQ thiamine ABC tr 99.3 6.5E-12 1.4E-16 113.1 10.3 118 57-191 16-140 (213)
333 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.3 6.4E-12 1.4E-16 114.1 10.2 127 57-208 40-180 (224)
334 PRK11607 potG putrescine trans 99.3 5.9E-12 1.3E-16 122.6 10.6 137 58-211 38-190 (377)
335 PRK13548 hmuV hemin importer A 99.3 5.2E-12 1.1E-16 117.2 9.7 175 55-287 20-212 (258)
336 PRK10253 iron-enterobactin tra 99.3 4.5E-12 9.7E-17 118.1 9.3 136 55-207 25-180 (265)
337 PRK13638 cbiO cobalt transport 99.3 6.2E-12 1.3E-16 117.5 10.0 142 57-211 19-177 (271)
338 PRK11300 livG leucine/isoleuci 99.3 4.7E-12 1E-16 117.2 9.1 136 55-206 23-189 (255)
339 cd03267 ABC_NatA_like Similar 99.3 4.8E-12 1E-16 115.8 8.9 135 55-207 39-190 (236)
340 COG0410 LivF ABC-type branched 99.3 3.3E-12 7.3E-17 112.8 7.5 141 55-211 21-177 (237)
341 TIGR01189 ccmA heme ABC export 99.3 5.7E-12 1.2E-16 112.2 9.1 135 55-209 18-166 (198)
342 KOG0066 eIF2-interacting prote 99.3 1.6E-11 3.6E-16 116.7 12.6 153 58-277 606-762 (807)
343 PRK10575 iron-hydroxamate tran 99.3 5.3E-12 1.2E-16 117.6 9.3 136 55-207 29-184 (265)
344 cd04167 Snu114p Snu114p subfam 99.3 5E-12 1.1E-16 113.8 8.8 82 67-155 2-107 (213)
345 cd03295 ABC_OpuCA_Osmoprotecti 99.3 5.7E-12 1.2E-16 115.8 9.2 120 57-191 19-147 (242)
346 TIGR02769 nickel_nikE nickel i 99.3 1.1E-11 2.4E-16 115.4 11.3 137 57-205 29-185 (265)
347 PRK04004 translation initiatio 99.3 7.5E-12 1.6E-16 128.1 10.8 83 65-155 6-107 (586)
348 PRK11231 fecE iron-dicitrate t 99.3 6.6E-12 1.4E-16 116.2 9.6 120 55-191 20-150 (255)
349 PRK13643 cbiO cobalt transport 99.3 6.8E-12 1.5E-16 118.2 9.7 143 55-211 24-185 (288)
350 TIGR00972 3a0107s01c2 phosphat 99.3 9E-12 1.9E-16 114.8 10.3 143 55-208 19-182 (247)
351 PRK11614 livF leucine/isoleuci 99.3 5.2E-12 1.1E-16 115.6 8.7 137 57-207 23-174 (237)
352 KOG0073 GTP-binding ADP-ribosy 99.3 1.4E-11 3E-16 102.3 10.1 145 66-290 17-177 (185)
353 cd03260 ABC_PstB_phosphate_tra 99.3 6.9E-12 1.5E-16 114.1 9.3 139 57-209 18-180 (227)
354 PRK09700 D-allose transporter 99.3 4.5E-12 9.7E-17 129.0 8.9 142 57-212 23-187 (510)
355 PRK13651 cobalt transporter AT 99.3 5.7E-12 1.2E-16 119.5 9.0 144 55-211 25-206 (305)
356 PRK15439 autoinducer 2 ABC tra 99.3 8E-12 1.7E-16 127.0 10.6 177 57-288 281-475 (510)
357 PRK09700 D-allose transporter 99.3 6.6E-12 1.4E-16 127.7 10.1 176 57-287 281-480 (510)
358 PRK11288 araG L-arabinose tran 99.3 6.3E-12 1.4E-16 127.6 9.8 142 57-212 22-182 (501)
359 COG3596 Predicted GTPase [Gene 99.3 4.4E-12 9.5E-17 114.5 7.4 161 64-292 38-223 (296)
360 PRK13539 cytochrome c biogenes 99.3 8.3E-12 1.8E-16 111.9 9.2 132 58-209 21-166 (207)
361 PRK10982 galactose/methyl gala 99.3 7.7E-12 1.7E-16 126.7 10.0 141 55-211 16-175 (491)
362 KOG0062 ATPase component of AB 99.3 4.1E-12 8.9E-17 123.2 7.5 86 165-291 181-270 (582)
363 TIGR03873 F420-0_ABC_ATP propo 99.3 8.7E-12 1.9E-16 115.5 9.5 136 55-207 19-174 (256)
364 COG4555 NatA ABC-type Na+ tran 99.3 6.2E-12 1.3E-16 108.5 7.7 173 55-287 20-204 (245)
365 PRK13637 cbiO cobalt transport 99.3 9.3E-12 2E-16 117.2 9.6 142 55-211 25-185 (287)
366 PRK13541 cytochrome c biogenes 99.3 1.2E-11 2.6E-16 109.8 9.7 133 58-211 19-164 (195)
367 cd03300 ABC_PotA_N PotA is an 99.3 9.1E-12 2E-16 113.7 9.0 118 57-191 18-142 (232)
368 PRK13647 cbiO cobalt transport 99.3 9.8E-12 2.1E-16 116.3 9.5 140 57-211 23-179 (274)
369 PRK15079 oligopeptide ABC tran 99.3 9.9E-12 2.1E-16 119.1 9.6 143 57-211 39-202 (331)
370 PRK09984 phosphonate/organopho 99.3 1.1E-11 2.3E-16 115.3 9.6 143 55-207 22-189 (262)
371 COG0480 FusA Translation elong 99.3 3.4E-12 7.5E-17 131.5 6.8 116 64-191 9-144 (697)
372 PRK13634 cbiO cobalt transport 99.3 6E-12 1.3E-16 118.7 7.9 143 55-211 25-186 (290)
373 PRK11819 putative ABC transpor 99.3 9.8E-12 2.1E-16 127.6 10.0 138 57-210 25-203 (556)
374 PRK11819 putative ABC transpor 99.3 5.2E-12 1.1E-16 129.6 7.8 165 57-287 342-513 (556)
375 TIGR03005 ectoine_ehuA ectoine 99.3 1.2E-11 2.6E-16 114.4 9.4 140 55-207 18-183 (252)
376 PTZ00141 elongation factor 1- 99.3 7.9E-12 1.7E-16 124.3 8.8 84 66-156 8-122 (446)
377 COG4148 ModC ABC-type molybdat 99.3 7.9E-12 1.7E-16 112.9 7.9 154 64-254 23-192 (352)
378 COG4525 TauB ABC-type taurine 99.3 2.5E-11 5.5E-16 104.3 10.6 131 57-207 23-169 (259)
379 TIGR03410 urea_trans_UrtE urea 99.3 6.3E-12 1.4E-16 114.5 7.5 120 55-191 18-143 (230)
380 TIGR03719 ABC_ABC_ChvD ATP-bin 99.3 5E-12 1.1E-16 129.7 7.5 165 57-288 340-512 (552)
381 PRK13652 cbiO cobalt transport 99.3 9.6E-12 2.1E-16 116.6 8.8 139 57-210 22-177 (277)
382 TIGR03864 PQQ_ABC_ATP ABC tran 99.3 1.8E-11 4E-16 111.9 10.3 139 58-212 20-174 (236)
383 cd01885 EF2 EF2 (for archaea a 99.3 3.2E-11 6.8E-16 109.0 11.6 83 66-155 1-109 (222)
384 TIGR01978 sufC FeS assembly AT 99.3 1.4E-11 3E-16 113.2 9.5 137 55-207 18-181 (243)
385 cd01853 Toc34_like Toc34-like 99.3 1.5E-11 3.2E-16 113.0 9.5 60 66-125 32-92 (249)
386 cd03214 ABC_Iron-Siderophores_ 99.3 5E-12 1.1E-16 110.8 6.2 91 57-191 17-109 (180)
387 TIGR02836 spore_IV_A stage IV 99.3 2.2E-11 4.7E-16 116.4 10.8 66 64-129 16-108 (492)
388 TIGR03740 galliderm_ABC gallid 99.3 1.2E-11 2.6E-16 112.2 8.8 127 58-207 19-161 (223)
389 PRK15112 antimicrobial peptide 99.3 1.1E-11 2.5E-16 115.4 8.8 120 57-191 31-161 (267)
390 PRK15064 ABC transporter ATP-b 99.3 1.2E-11 2.6E-16 126.3 9.8 139 57-211 19-196 (530)
391 PRK13549 xylose transporter AT 99.3 1.1E-11 2.4E-16 125.9 9.4 143 55-211 23-184 (506)
392 KOG0462 Elongation factor-type 99.3 5E-11 1.1E-15 116.2 13.2 189 63-346 58-273 (650)
393 smart00176 RAN Ran (Ras-relate 99.3 2.9E-11 6.2E-16 107.7 10.8 145 71-290 1-153 (200)
394 PRK13639 cbiO cobalt transport 99.3 1.8E-11 3.9E-16 114.6 9.9 142 57-211 20-178 (275)
395 PRK14250 phosphate ABC transpo 99.3 1.1E-11 2.3E-16 113.9 8.3 118 55-191 21-143 (241)
396 TIGR03719 ABC_ABC_ChvD ATP-bin 99.3 1.5E-11 3.3E-16 126.2 10.2 45 56-111 22-66 (552)
397 PRK11701 phnK phosphonate C-P 99.3 8.7E-12 1.9E-16 115.6 7.7 124 55-191 24-163 (258)
398 PRK15093 antimicrobial peptide 99.3 1.6E-11 3.6E-16 117.8 9.8 149 55-212 25-200 (330)
399 PF00071 Ras: Ras family; Int 99.3 2.8E-11 6.1E-16 103.6 10.3 149 67-290 1-160 (162)
400 PRK12740 elongation factor G; 99.3 6.3E-12 1.4E-16 131.8 7.3 78 71-155 1-96 (668)
401 PRK10982 galactose/methyl gala 99.3 1.2E-11 2.6E-16 125.2 9.0 177 57-288 266-463 (491)
402 TIGR02633 xylG D-xylose ABC tr 99.3 1.8E-11 3.8E-16 124.3 10.2 177 57-287 278-474 (500)
403 PRK13644 cbiO cobalt transport 99.3 3.7E-11 8.1E-16 112.4 11.6 141 55-211 20-177 (274)
404 PRK13409 putative ATPase RIL; 99.3 8E-12 1.7E-16 128.4 7.7 120 63-210 363-493 (590)
405 PRK09544 znuC high-affinity zi 99.3 1.2E-11 2.6E-16 114.2 8.0 108 57-191 22-132 (251)
406 TIGR02323 CP_lyasePhnK phospho 99.3 1.3E-11 2.7E-16 114.2 8.2 124 55-191 21-160 (253)
407 PRK09473 oppD oligopeptide tra 99.3 1.3E-11 2.9E-16 118.2 8.5 147 55-211 34-202 (330)
408 PRK13549 xylose transporter AT 99.3 1.9E-11 4E-16 124.3 10.0 176 57-287 280-476 (506)
409 KOG0062 ATPase component of AB 99.3 1.1E-11 2.5E-16 120.1 7.9 213 4-288 301-551 (582)
410 PRK13650 cbiO cobalt transport 99.3 2.4E-11 5.2E-16 114.0 9.9 141 55-212 25-182 (279)
411 PRK11308 dppF dipeptide transp 99.3 1.4E-11 3.1E-16 117.9 8.6 144 55-212 33-196 (327)
412 TIGR00968 3a0106s01 sulfate AB 99.3 1.9E-11 4.1E-16 112.0 9.0 134 57-207 18-167 (237)
413 PRK14247 phosphate ABC transpo 99.3 2.4E-11 5.2E-16 112.2 9.7 141 55-207 21-183 (250)
414 COG4619 ABC-type uncharacteriz 99.3 8E-12 1.7E-16 104.8 5.8 136 57-207 21-170 (223)
415 PRK13636 cbiO cobalt transport 99.3 2.4E-11 5.2E-16 114.2 9.8 142 55-211 24-182 (283)
416 PRK14242 phosphate transporter 99.3 2.5E-11 5.4E-16 112.3 9.7 142 57-207 24-186 (253)
417 COG4608 AppF ABC-type oligopep 99.2 1.7E-11 3.6E-16 111.3 8.0 108 55-211 31-150 (268)
418 PRK13546 teichoic acids export 99.2 3E-11 6.5E-16 112.3 9.9 110 55-191 42-155 (264)
419 PRK10762 D-ribose transporter 99.2 2.4E-11 5.2E-16 123.3 10.1 121 57-191 270-407 (501)
420 PRK13632 cbiO cobalt transport 99.2 2.6E-11 5.5E-16 113.4 9.5 142 56-212 26-184 (271)
421 PRK13547 hmuV hemin importer A 99.2 3E-11 6.6E-16 112.8 9.8 128 55-191 19-157 (272)
422 PRK13545 tagH teichoic acids e 99.2 2.1E-11 4.6E-16 121.4 9.1 130 57-211 42-184 (549)
423 cd03299 ABC_ModC_like Archeal 99.2 2.6E-11 5.6E-16 110.9 9.0 134 58-208 18-167 (235)
424 PRK13631 cbiO cobalt transport 99.2 2.5E-11 5.5E-16 115.8 9.3 144 57-212 44-218 (320)
425 PRK13646 cbiO cobalt transport 99.2 2E-11 4.3E-16 115.0 8.4 144 55-211 25-186 (286)
426 PRK10261 glutathione transport 99.2 2E-11 4.4E-16 126.8 9.1 144 55-211 34-209 (623)
427 PRK10261 glutathione transport 99.2 1.9E-11 4E-16 127.1 8.7 143 57-211 342-504 (623)
428 PRK13635 cbiO cobalt transport 99.2 3.6E-11 7.8E-16 112.8 9.8 141 57-212 25-182 (279)
429 PRK15134 microcin C ABC transp 99.2 2.7E-11 5.8E-16 123.8 9.4 149 55-211 27-197 (529)
430 PRK14235 phosphate transporter 99.2 4.3E-11 9.3E-16 111.6 10.0 144 56-208 36-201 (267)
431 COG4604 CeuD ABC-type enteroch 99.2 7.9E-11 1.7E-15 101.4 10.6 157 55-255 19-200 (252)
432 PRK14267 phosphate ABC transpo 99.2 2.9E-11 6.4E-16 111.8 8.8 143 57-207 22-186 (253)
433 COG1127 Ttg2A ABC-type transpo 99.2 1.1E-11 2.4E-16 109.9 5.6 131 55-203 26-178 (263)
434 PRK10247 putative ABC transpor 99.2 4.3E-11 9.3E-16 108.7 9.7 139 55-211 25-178 (225)
435 PRK14241 phosphate transporter 99.2 3.5E-11 7.6E-16 111.6 9.3 127 57-191 22-160 (258)
436 cd01873 RhoBTB RhoBTB subfamil 99.2 6.8E-11 1.5E-15 105.0 10.7 82 66-156 3-101 (195)
437 cd04105 SR_beta Signal recogni 99.2 2.4E-11 5.3E-16 108.5 7.9 80 66-155 1-85 (203)
438 TIGR03771 anch_rpt_ABC anchore 99.2 2.9E-11 6.3E-16 109.7 8.4 126 65-209 6-152 (223)
439 KOG0465 Mitochondrial elongati 99.2 7.2E-12 1.6E-16 123.2 4.6 281 65-361 39-391 (721)
440 COG4559 ABC-type hemin transpo 99.2 5.7E-11 1.2E-15 103.4 9.4 131 59-211 21-182 (259)
441 PRK14254 phosphate ABC transpo 99.2 5.2E-11 1.1E-15 112.0 9.9 142 57-207 57-217 (285)
442 COG1117 PstB ABC-type phosphat 99.2 9E-11 2E-15 102.3 10.5 139 54-204 24-183 (253)
443 PRK15056 manganese/iron transp 99.2 6.8E-11 1.5E-15 110.5 10.6 137 57-209 25-181 (272)
444 PRK10419 nikE nickel transport 99.2 4.3E-11 9.3E-16 111.6 9.2 137 55-205 30-186 (268)
445 PRK10744 pstB phosphate transp 99.2 7.1E-11 1.5E-15 109.7 10.6 143 55-208 31-194 (260)
446 COG1134 TagH ABC-type polysacc 99.2 4.7E-11 1E-15 106.5 8.9 115 54-192 44-160 (249)
447 TIGR03269 met_CoM_red_A2 methy 99.2 2.9E-11 6.3E-16 123.3 8.6 124 57-191 302-439 (520)
448 TIGR03269 met_CoM_red_A2 methy 99.2 3.7E-11 8.1E-16 122.5 9.4 145 57-212 18-210 (520)
449 PRK11022 dppD dipeptide transp 99.2 5.7E-11 1.2E-15 113.8 10.0 149 57-212 25-195 (326)
450 COG2229 Predicted GTPase [Gene 99.2 1.3E-10 2.8E-15 98.8 10.9 147 66-289 11-176 (187)
451 PRK15134 microcin C ABC transp 99.2 3.3E-11 7.1E-16 123.2 8.8 122 57-191 304-437 (529)
452 TIGR02633 xylG D-xylose ABC tr 99.2 3.8E-11 8.3E-16 121.9 9.2 144 55-212 19-183 (500)
453 PRK03695 vitamin B12-transport 99.2 6.1E-11 1.3E-15 109.3 9.7 118 55-190 14-137 (248)
454 COG1123 ATPase components of v 99.2 2.4E-11 5.1E-16 120.6 7.1 143 55-212 309-471 (539)
455 PRK14259 phosphate ABC transpo 99.2 8.9E-11 1.9E-15 109.6 10.6 142 57-207 31-191 (269)
456 PRK14275 phosphate ABC transpo 99.2 4.9E-11 1.1E-15 112.3 8.9 142 57-207 57-219 (286)
457 KOG0057 Mitochondrial Fe/S clu 99.2 5.2E-11 1.1E-15 116.6 9.1 153 55-254 370-549 (591)
458 PRK13648 cbiO cobalt transport 99.2 7E-11 1.5E-15 110.3 9.7 141 57-212 27-184 (269)
459 PRK13633 cobalt transporter AT 99.2 8E-11 1.7E-15 110.5 9.8 142 57-212 28-186 (280)
460 PRK13645 cbiO cobalt transport 99.2 4.3E-11 9.4E-16 112.9 8.0 144 55-211 29-191 (289)
461 PRK14273 phosphate ABC transpo 99.2 6.5E-11 1.4E-15 109.5 9.0 142 55-207 25-187 (254)
462 PRK10938 putative molybdenum t 99.2 3.5E-11 7.6E-16 121.8 7.7 141 55-212 21-177 (490)
463 TIGR02982 heterocyst_DevA ABC 99.2 8.7E-11 1.9E-15 106.3 9.5 144 55-212 23-183 (220)
464 cd03245 ABCC_bacteriocin_expor 99.2 7.4E-11 1.6E-15 106.7 8.9 140 56-212 21-182 (220)
465 PRK14256 phosphate ABC transpo 99.2 1.2E-10 2.6E-15 107.7 10.4 143 57-207 22-185 (252)
466 TIGR02770 nickel_nikD nickel i 99.2 4.8E-11 1E-15 108.8 7.5 121 56-191 5-137 (230)
467 PRK13640 cbiO cobalt transport 99.2 7.4E-11 1.6E-15 110.9 8.9 141 57-212 25-185 (282)
468 PRK14272 phosphate ABC transpo 99.2 7.3E-11 1.6E-15 109.1 8.6 52 55-114 22-73 (252)
469 cd01882 BMS1 Bms1. Bms1 is an 99.2 1.6E-10 3.4E-15 105.0 10.5 76 64-155 38-116 (225)
470 PRK14269 phosphate ABC transpo 99.2 1.1E-10 2.3E-15 107.6 9.5 138 57-207 20-179 (246)
471 PTZ00132 GTP-binding nuclear p 99.2 1.4E-10 2.9E-15 104.6 10.0 148 66-290 10-167 (215)
472 PRK14258 phosphate ABC transpo 99.2 8.7E-11 1.9E-15 109.2 8.9 126 57-191 25-162 (261)
473 PRK14248 phosphate ABC transpo 99.2 8.9E-11 1.9E-15 109.5 8.9 126 55-191 39-176 (268)
474 cd03230 ABC_DR_subfamily_A Thi 99.2 8.4E-11 1.8E-15 102.4 8.2 47 57-114 18-64 (173)
475 TIGR00991 3a0901s02IAP34 GTP-b 99.2 5.9E-11 1.3E-15 110.9 7.4 60 66-125 39-99 (313)
476 PRK14274 phosphate ABC transpo 99.2 9.1E-11 2E-15 108.9 8.7 126 57-191 30-167 (259)
477 PRK14268 phosphate ABC transpo 99.2 1.1E-10 2.4E-15 108.2 9.2 127 57-191 30-166 (258)
478 PRK14270 phosphate ABC transpo 99.2 1.1E-10 2.4E-15 107.8 9.1 143 55-208 22-185 (251)
479 cd03236 ABC_RNaseL_inhibitor_d 99.2 6.2E-11 1.3E-15 109.6 7.3 131 64-208 25-177 (255)
480 CHL00131 ycf16 sulfate ABC tra 99.2 2.4E-10 5.2E-15 105.6 11.2 139 55-209 25-190 (252)
481 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.2 2.9E-10 6.2E-15 97.3 10.5 157 66-294 23-188 (221)
482 PRK14251 phosphate ABC transpo 99.2 1E-10 2.2E-15 108.0 8.4 142 55-206 22-183 (251)
483 PRK13642 cbiO cobalt transport 99.1 1.5E-10 3.2E-15 108.6 9.5 141 55-212 25-182 (277)
484 PRK14271 phosphate ABC transpo 99.1 2.1E-10 4.5E-15 107.4 10.4 141 57-208 39-201 (276)
485 PRK09580 sufC cysteine desulfu 99.1 1.2E-10 2.6E-15 107.3 8.7 47 55-114 19-67 (248)
486 cd03290 ABCC_SUR1_N The SUR do 99.1 2.8E-10 6.1E-15 102.8 10.8 48 57-115 19-66 (218)
487 PRK14237 phosphate transporter 99.1 2.4E-10 5.3E-15 106.5 10.6 144 57-209 38-202 (267)
488 KOG0092 GTPase Rab5/YPT51 and 99.1 3.5E-10 7.6E-15 96.7 10.3 153 66-293 6-169 (200)
489 PLN03073 ABC transporter F fam 99.1 3.5E-11 7.6E-16 126.1 5.2 32 58-89 196-227 (718)
490 KOG0927 Predicted transporter 99.1 1.1E-10 2.4E-15 114.0 8.1 191 60-297 96-301 (614)
491 PRK10418 nikD nickel transport 99.1 1.6E-10 3.4E-15 107.0 8.8 138 57-207 21-177 (254)
492 cd03234 ABCG_White The White s 99.1 3.1E-10 6.7E-15 103.1 10.5 138 55-212 25-185 (226)
493 PRK14240 phosphate transporter 99.1 2E-10 4.3E-15 106.0 9.3 142 57-207 21-183 (250)
494 PRK14246 phosphate ABC transpo 99.1 2.2E-10 4.8E-15 106.2 9.6 138 57-205 28-188 (257)
495 PRK14238 phosphate transporter 99.1 1.3E-10 2.9E-15 108.5 8.2 52 57-114 42-93 (271)
496 COG1119 ModF ABC-type molybden 99.1 2.8E-10 6.2E-15 101.5 9.7 141 57-213 49-214 (257)
497 PLN00043 elongation factor 1-a 99.1 1.2E-10 2.6E-15 115.9 8.2 83 66-155 8-121 (447)
498 cd03222 ABC_RNaseL_inhibitor T 99.1 1.1E-10 2.3E-15 101.8 6.9 40 64-114 24-63 (177)
499 PF04548 AIG1: AIG1 family; I 99.1 2.4E-10 5.1E-15 102.9 9.4 88 67-154 2-95 (212)
500 PRK14244 phosphate ABC transpo 99.1 1.6E-10 3.5E-15 106.7 8.6 143 57-207 23-186 (251)
No 1
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=4.5e-78 Score=546.41 Aligned_cols=365 Identities=59% Similarity=0.940 Sum_probs=349.9
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCceeEEecCCcEEEEEcCCCCchHH
Q 016864 1 MATVMQKIKDIEDEMARTQKNKATAHHLGLLKAKLAKLRRELLTPTSKGGGGGGGEGFDVTKSGDSRVGLVGFPSVGKST 80 (381)
Q Consensus 1 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~naGKST 80 (381)
||++||||+++|+||++.|+||+|++++.+++++|++|++|++..++ + .++.+.+|.+.++|..+|+|||+|++||||
T Consensus 1 ~~tieEkIk~iEeeia~tpknKaTe~hig~lKaklA~Lr~El~~~~~-~-~gggg~gf~V~KsGda~v~lVGfPsvGKSt 78 (365)
T COG1163 1 AMTIEEKIKAIEEEIARTPKNKATEHHIGLLKAKLAELREELEKRKS-K-SGGGGSGFAVKKSGDATVALVGFPSVGKST 78 (365)
T ss_pred CCCHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhhhhh-c-CCCCCCcceEeccCCeEEEEEcCCCccHHH
Confidence 89999999999999999999999999999999999999999987632 2 222237899999999999999999999999
Q ss_pred HHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCChHHHH
Q 016864 81 LLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKR 160 (381)
Q Consensus 81 Lln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~~~~ 160 (381)
|+|.|||....+++|||||+.|.+|++.|+|.+|+++|+||++++++.|.+++.+.++.+++||++++|+|+..+....+
T Consensus 79 LL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~ 158 (365)
T COG1163 79 LLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRD 158 (365)
T ss_pred HHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877788
Q ss_pred HHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccc
Q 016864 161 LIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRI 240 (381)
Q Consensus 161 ~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~ 240 (381)
.+..+|+..|+.+++.++.+.+.++.++|+.+....+..++|++.++.+|.+|++.+|++.+.++.|.||+++.+.+++.
T Consensus 159 ~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrv 238 (365)
T COG1163 159 IIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRV 238 (365)
T ss_pred HHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEecCCcCCHHHHHHHhcCCCeeeecccccccHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCCCCHH
Q 016864 241 YMPCIYVINKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKRTVE 320 (381)
Q Consensus 241 ~~p~i~v~NK~Dl~~~~~l~~l~~~~~~v~vSa~~~~gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (381)
|+|+|+|+||+|+.+.++++.+.+.+.++++||..+.|+++|.+.||+.++++++||+++|..|++++|++++++ +|+.
T Consensus 239 Y~p~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~G-sTV~ 317 (365)
T COG1163 239 YKPALYVVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRG-STVG 317 (365)
T ss_pred eeeeEEEEecccccCHHHHHHHHhccceEEEecccCCCHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCC-CcHH
Confidence 999999999999999999999988889999999999999999999999999999999999999999999999775 9999
Q ss_pred HHHHHHHHHHHhcccEEEEecCCCccCCeeeCCCcccccCCCCCCCCC
Q 016864 321 DFCERIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELEDEXXXXXXXX 368 (381)
Q Consensus 321 ~~~~~i~~~~~~~f~~a~~~~~~~~~~~~rvg~~~~l~~~d~~~i~~~ 368 (381)
|+|.+||++|.++|+||+|||+|++|++||||.+|+|+|+|||+||++
T Consensus 318 Dvc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~~k 365 (365)
T COG1163 318 DVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIHAK 365 (365)
T ss_pred HHHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEeeC
Confidence 999999999999999999999999999999999999999999999864
No 2
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=100.00 E-value=2e-64 Score=440.88 Aligned_cols=364 Identities=61% Similarity=0.994 Sum_probs=349.8
Q ss_pred CCHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCceeEEecCCcEEEEEcCCCCchHHH
Q 016864 2 ATVMQKIKDIEDEMARTQKNKATAHHLGLLKAKLAKLRRELLTPTSKGGGGGGGEGFDVTKSGDSRVGLVGFPSVGKSTL 81 (381)
Q Consensus 2 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~naGKSTL 81 (381)
|.+.+||+++|+.++|.++||+|+-+...++.+|++++.++..+. +..++++.+|++.++|..+|+++|.|.+|||||
T Consensus 1 MGIlekI~eIE~EmaRTQKNKaTEyHLGlLKaKlAkyR~qLlep~--~~s~~kg~GFeV~KsGdaRValIGfPSVGKStl 78 (364)
T KOG1486|consen 1 MGILEKIKEIEAEMARTQKNKATEYHLGLLKAKLAKYRQQLLEPT--KGSSGKGEGFEVLKSGDARVALIGFPSVGKSTL 78 (364)
T ss_pred CcHHHHHHHHHHHHHHhhhccchhHhHHHHHHHHHHHHHHhCCCC--CCCCCCCCCeeeeccCCeEEEEecCCCccHHHH
Confidence 678999999999999999999999999999999999999987765 334457889999999999999999999999999
Q ss_pred HHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCChHHHHH
Q 016864 82 LNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRL 161 (381)
Q Consensus 82 ln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~ 161 (381)
+..||+.....+.|.|||..+.+|.+.|+|..++++|.||++++++.|.++++|..+..+.+|+++.|+|+.....+.+.
T Consensus 79 Ls~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr~~ 158 (364)
T KOG1486|consen 79 LSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQREI 158 (364)
T ss_pred HHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888889
Q ss_pred HHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhccccc
Q 016864 162 IEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIY 241 (381)
Q Consensus 162 i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~ 241 (381)
+..+|+..|+.++++++.+....+..+++.+....|....++..+..+|.+|++.++.+++.++.|.||+++.+.+.+.+
T Consensus 159 le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y 238 (364)
T KOG1486|consen 159 LEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVY 238 (364)
T ss_pred HHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHhccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecCCcCCHHHHHHHhcCCCeeeecccccccHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCCCCHHH
Q 016864 242 MPCIYVINKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKRTVED 321 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~l~~l~~~~~~v~vSa~~~~gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (381)
.++++|.||+|..+.++++.+.+.|+.+.+||.-..+++.|++.+|+.+.+.++||+++|..|++++|++++. ++++++
T Consensus 239 ~~ClYvYnKID~vs~eevdrlAr~PnsvViSC~m~lnld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~-g~tve~ 317 (364)
T KOG1486|consen 239 IKCLYVYNKIDQVSIEEVDRLARQPNSVVISCNMKLNLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRK-GSTVED 317 (364)
T ss_pred EEEEEEeeccceecHHHHHHHhcCCCcEEEEeccccCHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeC-CCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999965 599999
Q ss_pred HHHHHHHHHHhcccEEEEecCCCccCCeeeCCCcccccCCCCCCCCC
Q 016864 322 FCERIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELEDEXXXXXXXX 368 (381)
Q Consensus 322 ~~~~i~~~~~~~f~~a~~~~~~~~~~~~rvg~~~~l~~~d~~~i~~~ 368 (381)
++..||+++...|+||.|||.|++|++||||..|.++|+|+|.|+.+
T Consensus 318 ~C~~iHr~l~~qfkyAlVWGtSakhsPQrvgl~h~~~dEdvvqi~~k 364 (364)
T KOG1486|consen 318 VCHRIHRTLAAQFKYALVWGTSAKHSPQRVGLGHTLEDEDVVQIVKK 364 (364)
T ss_pred HHHHHHHHHHHhhceeeEeccccccCcceeccccccccccceeeecC
Confidence 99999999999999999999999999999999999999999998753
No 3
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-58 Score=401.40 Aligned_cols=356 Identities=75% Similarity=1.226 Sum_probs=338.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCceeEEecCCcEEEEEcCCCCchHHHHH
Q 016864 4 VMQKIKDIEDEMARTQKNKATAHHLGLLKAKLAKLRRELLTPTSKGGGGGGGEGFDVTKSGDSRVGLVGFPSVGKSTLLN 83 (381)
Q Consensus 4 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~naGKSTLln 83 (381)
.-+||+++|+.+++.++|++|+.+...++.++.|+++++... ..++.+.+|++.+.+..+++++|.|.+|||||+.
T Consensus 2 ~~~ki~~ie~emaktqKNkat~~hlgllkaklaKlrreli~~----g~~g~~~gfDV~ktg~a~vg~vgFPSvGksTl~~ 77 (358)
T KOG1487|consen 2 TLEKIKEIEDEMARTQKNKATSFHLGLLKAKLAKLRRELITG----GGGGGGGGFDVAKTGDARVGFVGFPSVGKSTLLS 77 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhhccC----CCCCCCCCccceeecceeeeEEecCccchhhhhh
Confidence 568999999999999999999999999999999999997762 1223344889999897899999999999999999
Q ss_pred HHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCChHHHHHHH
Q 016864 84 KLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIE 163 (381)
Q Consensus 84 ~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~ 163 (381)
-|+|...++..|.|||....+|.+.++|.++++.|.||+++++..|.+++.|.++..+.|++++.|+|+..|......++
T Consensus 78 ~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~hk~~ie 157 (358)
T KOG1487|consen 78 KLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKIIE 157 (358)
T ss_pred hhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhccccccc
Q 016864 164 KELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMP 243 (381)
Q Consensus 164 ~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p 243 (381)
.+|+-||+.++++|+.+-..+++++++++.. .+++.+.++.++.++.+.++++.+..+.|.+++++.+.+.+.+.|
T Consensus 158 ~eleg~girlnk~pp~i~~kkKdkgGInlt~----~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp 233 (358)
T KOG1487|consen 158 KELEGFGIRLNKQPPNIGTKKKDKGGINLTG----THLDLDLQRSILSEYRIHSADIALRFDATADDLIDVVEGNRIYVP 233 (358)
T ss_pred HhhhcceeeccCCCCCccccccccCceeeec----chhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhhccCceeee
Confidence 9999999999999999999999999999887 467889999999999999999999999999999999999999999
Q ss_pred EEEEEecCCcCCHHHHHHHhcCCCeeeecccccccHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCCCCHHHHH
Q 016864 244 CIYVINKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKRTVEDFC 323 (381)
Q Consensus 244 ~i~v~NK~Dl~~~~~l~~l~~~~~~v~vSa~~~~gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (381)
+++++||+|-.+.++++.+...+..+++||++++++++|++.+|+.+.+.++||+|+|..|+++.|++++.+..+++|++
T Consensus 234 ~iyvLNkIdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~sv~dfc 313 (358)
T KOG1487|consen 234 CIYVLNKIDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRSVEDFC 313 (358)
T ss_pred eeeeecccceeeeeccceeeeccceeecccccccchHHHHHHHhhcchheEEecCCCCCCCCCCCCceecCCcccHHHHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHhcccEEEEecCCCccCCeeeCCCcccccCCCCCCCC
Q 016864 324 ERIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELEDEXXXXXXX 367 (381)
Q Consensus 324 ~~i~~~~~~~f~~a~~~~~~~~~~~~rvg~~~~l~~~d~~~i~~ 367 (381)
..||+.+.++|+||.|||.|++|.+||||.+|+|+|.|+|.||.
T Consensus 314 ~~ih~~~~~~fk~alvwg~s~kh~pq~vg~~h~l~dedvv~ivk 357 (358)
T KOG1487|consen 314 NKIHKSILKQFKYALVWGSSVKHNPQRVGKEHVLEDEDVVQIVK 357 (358)
T ss_pred HHHHHHHHHhhhhheEeccccCcChhhcchhheeccchhhhhcc
Confidence 99999999999999999999999999999999999999999985
No 4
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=8.4e-40 Score=314.12 Aligned_cols=291 Identities=24% Similarity=0.292 Sum_probs=212.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC-----------------EEeeecCcccccccc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG-----------------AKIQLLDLPGIIEGA 126 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g-----------------~~i~l~DtpG~~~~~ 126 (381)
...+|||||.||||||||||+|++....+++|||||++|..|.+.+.+ .++.++||||++++.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 347999999999999999999999999999999999999999998753 358999999999988
Q ss_pred cCCCcchhhhhcccCCcchhHHHHhcC------------CChHHHHHHHHHHHhcccc-cccCcCcccceeeccccceee
Q 016864 127 KDGKGRGRQVISTARTCNCILIVLDAI------------KPITHKRLIEKELEGFGIR-LNKQPPNLTFRKKDKGGINFT 193 (381)
Q Consensus 127 ~~~~~~~~~~~~~~~~~d~il~vvd~~------------~~~~~~~~i~~~l~~~~~~-~~~~~~~ls~~~~~r~~~~i~ 193 (381)
+.+.+.+++++..++++|+++||+|++ +|..+.+.+..+|..+++. +.+++..+....+.. .+.-.
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~-~~~~~ 178 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKK-KKKKE 178 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccc-cchhh
Confidence 888888899999999999999999984 4678899999999988883 444443333210000 00000
Q ss_pred ecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhc-ccccccEEEEEecC--Cc-C-CHHHHHHHhc----
Q 016864 194 STVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEG-SRIYMPCIYVINKI--DQ-I-TLEELEILDK---- 264 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~-~~~~~p~i~v~NK~--Dl-~-~~~~l~~l~~---- 264 (381)
...... ..+.+..+|++..... ..+|+.++...+-.- ....+|+|+|+|+. |+ . ..+.++.+.+
T Consensus 179 ~~~~~~--~l~~v~~~L~~~~~~~-----~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~ 251 (390)
T PTZ00258 179 EKVELD--VLKKVLEWLEEGKPVR-----DGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGE 251 (390)
T ss_pred HHHHHH--HHHHHHHHHHcCCccc-----cCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHHHh
Confidence 000000 0023333343311111 136666654333221 12248999999999 86 2 3333433322
Q ss_pred --CCCeeeecccccc-----------------------cHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCCCCH
Q 016864 265 --LPHYCPVSAHLEW-----------------------NLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKRTV 319 (381)
Q Consensus 265 --~~~~v~vSa~~~~-----------------------gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (381)
..+++++||+.+. |++++.+.+++.|+++++||..+.+. .+.++++ ++|+
T Consensus 252 ~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g~~e~----raw~i~~-Gsta 326 (390)
T PTZ00258 252 KGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAGPDEV----RCWTIQK-GTKA 326 (390)
T ss_pred cCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCCCCce----eEEEeCC-CCcH
Confidence 2458999987664 89999999999999999999886444 3456655 5999
Q ss_pred HHHHHHHHHHHHhcccEEEEecCC----------CccCC--eeeCCCcccccCCCCCCCC
Q 016864 320 EDFCERIHKDMVKQFKYALVWGSS----------AKHKP--QRVGKEHELEDEXXXXXXX 367 (381)
Q Consensus 320 ~~~~~~i~~~~~~~f~~a~~~~~~----------~~~~~--~rvg~~~~l~~~d~~~i~~ 367 (381)
.++|+.||+||.++|++|+||+++ ++..| +++|++|+++|||||+|.-
T Consensus 327 ~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~f 386 (390)
T PTZ00258 327 PQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFKF 386 (390)
T ss_pred HHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEEe
Confidence 999999999999999999999987 55656 8999999999999998743
No 5
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=3.5e-39 Score=313.33 Aligned_cols=292 Identities=27% Similarity=0.413 Sum_probs=221.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEE------------------------cCEEeeecCccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITY------------------------RGAKIQLLDLPG 121 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~------------------------~g~~i~l~DtpG 121 (381)
.+|||||.||||||||||+||+....+++|||||++|+.|.+.+ ...+++++||||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999999888899999999999998652 126789999999
Q ss_pred ccccccCCCcchhhhhcccCCcchhHHHHhcC---------------CChHHHHHHHHHHHhccc-ccccCcCcccceee
Q 016864 122 IIEGAKDGKGRGRQVISTARTCNCILIVLDAI---------------KPITHKRLIEKELEGFGI-RLNKQPPNLTFRKK 185 (381)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~---------------~~~~~~~~i~~~l~~~~~-~~~~~~~~ls~~~~ 185 (381)
+.++++.+.+.+++++..++++|++++|+|++ +|..+.+.+..+|..+.. .+.+++..+... .
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~-~ 160 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK-A 160 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-H
Confidence 99998888889999999999999999999997 357789999999999765 344444444221 1
Q ss_pred ccccce--eee--cccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcc-cccccEEEEEecCCcCC-HHHH
Q 016864 186 DKGGIN--FTS--TVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGS-RIYMPCIYVINKIDQIT-LEEL 259 (381)
Q Consensus 186 ~r~~~~--i~~--~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~-~~~~p~i~v~NK~Dl~~-~~~l 259 (381)
.+.... ... .....+++.+.+..+|++.+.. +.... |+.+++..+.... ...+|+|+|+||+|... .+.+
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~-~~~~~---~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l 236 (396)
T PRK09602 161 QAEKFDIEEALAEQLSGLGINEEHVKEALRELGLP-EDPSK---WTDEDLLELARELRKISKPMVIAANKADLPPAEENI 236 (396)
T ss_pred hcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCc-CcccC---CCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHH
Confidence 111111 111 1122356778899999887766 44433 4445544443332 22489999999999874 3334
Q ss_pred HHHh--cCCCeeeecccccccHHH-----------------------------------------------HH-HHHHHH
Q 016864 260 EILD--KLPHYCPVSAHLEWNLDG-----------------------------------------------LL-EKIWEY 289 (381)
Q Consensus 260 ~~l~--~~~~~v~vSa~~~~gl~~-----------------------------------------------L~-~~i~~~ 289 (381)
..+. .+..++++||..+.++++ ++ ..+++.
T Consensus 237 ~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~~~~~~~i~~~~~~~ 316 (396)
T PRK09602 237 ERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGGTGVQEAINTAVFDL 316 (396)
T ss_pred HHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4333 346789999999988755 23 778899
Q ss_pred cCCcEEEeCCCCCC------CCCCCcEEecCCCCCHHHHHHHHHHHHHhcccEEEEecCCCccCCeeeCCCcccccCCCC
Q 016864 290 LNLTRIYTKPKGMN------PDYEDPVILSSKKRTVEDFCERIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELEDEXXX 363 (381)
Q Consensus 290 l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~f~~a~~~~~~~~~~~~rvg~~~~l~~~d~~ 363 (381)
++++++||+++... .+...|+.+++ |+|+.|+|+.||+|+.++|++|..|. .++++|++|+++|||+|
T Consensus 317 L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~-g~t~~d~A~~IH~d~~~~fi~A~~~~-----~~~~~g~~~~l~dgDiv 390 (396)
T PRK09602 317 LDMIVVYPVEDENKLTDKKGNVLPDAFLLPK-GSTARDLAYKIHTDIGEGFLYAIDAR-----TKRRIGEDYELKDGDVI 390 (396)
T ss_pred hCCEEEEecCcccccccccCcccceeEEECC-CCCHHHHHHHHHHHHHhhceehhccc-----CCcccCCCcEecCCCEE
Confidence 99999999864211 13445677755 69999999999999999999999654 67899999999999999
Q ss_pred CCCCC
Q 016864 364 XXXXX 368 (381)
Q Consensus 364 ~i~~~ 368 (381)
+|++.
T Consensus 391 ~i~~~ 395 (396)
T PRK09602 391 KIVST 395 (396)
T ss_pred EEEeC
Confidence 99874
No 6
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=100.00 E-value=9.7e-37 Score=277.96 Aligned_cols=232 Identities=67% Similarity=1.065 Sum_probs=216.5
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchh
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCI 146 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 146 (381)
+|+|+|+||||||||+|+|+|....++++||||.++.+|.+.+++.+++++||||+.+....+.++..+.+..++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 79999999999999999999998888999999999999999999999999999999887655555667777888999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCC
Q 016864 147 LIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDA 226 (381)
Q Consensus 147 l~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~ 226 (381)
++|+|++++..+.+.+.++|+.+|+.++++++.+....+..+++.+....+..++|.+.++.+|+++++.++.+.+.++.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999998877888999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred ChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHHhcCCCeeeecccccccHHHHHHHHHHHcCCcEEEeC
Q 016864 227 TADDLIDVIEGSRIYMPCIYVINKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLEKIWEYLNLTRIYTK 298 (381)
Q Consensus 227 t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l~~~~~~v~vSa~~~~gl~~L~~~i~~~l~~~~~~~~ 298 (381)
|.||+.+.+.+.+.++|+++|+||+|+...++.+.+...++++++||+++.|+++|.+.+++.++++++||+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHhCcEEEecC
Confidence 999999999999889999999999999988887777666788999999999999999999999999999985
No 7
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=1e-36 Score=289.50 Aligned_cols=285 Identities=25% Similarity=0.363 Sum_probs=207.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC-----------------EEeeecCcccccccccC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG-----------------AKIQLLDLPGIIEGAKD 128 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g-----------------~~i~l~DtpG~~~~~~~ 128 (381)
.+|||||.||||||||||+||+....+++|||||++|..|.+.+.+ .++.++|+||++++++.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999999998899999999999999998765 25899999999998888
Q ss_pred CCcchhhhhcccCCcchhHHHHhcC------------CChHHHHHHHHHHHhccc-ccccCcCcccceeeccccceeeec
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAI------------KPITHKRLIEKELEGFGI-RLNKQPPNLTFRKKDKGGINFTST 195 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~------------~~~~~~~~i~~~l~~~~~-~~~~~~~~ls~~~~~r~~~~i~~~ 195 (381)
+.+.+++++..++.+|+++||||++ +|..+.+.+..+|..+.+ .+.+.+..+....+. ..... .
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~-~~~~~--~ 159 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKG-GDKEA--K 159 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc-cchhH--H
Confidence 8888999999999999999999985 467888899999988887 344444444322111 00000 0
Q ss_pred ccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhc--ccccccEEEEEecCCcC---CHHHHHHHhc-----C
Q 016864 196 VTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEG--SRIYMPCIYVINKIDQI---TLEELEILDK-----L 265 (381)
Q Consensus 196 ~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~--~~~~~p~i~v~NK~Dl~---~~~~l~~l~~-----~ 265 (381)
...+.+.++.+.+.- +..+. ..+|+.+++ ..+.. ....||+|+|+|+.|.. ..+.++.+.+ .
T Consensus 160 -----~e~~~l~~v~~~Le~-~~~~~-~~~~~~~e~-~~l~~~~llt~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~ 231 (364)
T PRK09601 160 -----AELELLEKLLEHLEE-GKPAR-TLELTDEEE-KLLKSLQLLTAKPVLYVANVDEDDLADGNPYVKKVREIAAKEG 231 (364)
T ss_pred -----HHHHHHHHHHHHHHc-CCCcc-cCCCCHHHH-HHHHHhcccccCCeEEEEECCccccccccHHHHHHHHHHHHcC
Confidence 001122222222211 11121 247887775 44443 22248999999999852 2333443332 3
Q ss_pred CCeeeeccccc----------------------ccHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCCCCHHHHH
Q 016864 266 PHYCPVSAHLE----------------------WNLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKRTVEDFC 323 (381)
Q Consensus 266 ~~~v~vSa~~~----------------------~gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (381)
.+++++||..+ .|++++.+..++.|+++.+||.++.+...| ++ +.++++.++|
T Consensus 232 ~~~i~~sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~evraw----ti-~~GstA~~aA 306 (364)
T PRK09601 232 AEVVVICAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPKEVRAW----TI-KKGTTAPQAA 306 (364)
T ss_pred CeEEEEEHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCCeEEEE----Ee-CCCCchHHHh
Confidence 45888887432 266778888999999999999887555444 34 5569999999
Q ss_pred HHHHHHHHhcccEEEEecCC----------Ccc-CCeee-CCCcccccCCCCCCC
Q 016864 324 ERIHKDMVKQFKYALVWGSS----------AKH-KPQRV-GKEHELEDEXXXXXX 366 (381)
Q Consensus 324 ~~i~~~~~~~f~~a~~~~~~----------~~~-~~~rv-g~~~~l~~~d~~~i~ 366 (381)
+.||+||+++|.+|.|++++ ++. +..|+ |++|+++||||+.|-
T Consensus 307 g~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~ 361 (364)
T PRK09601 307 GVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFR 361 (364)
T ss_pred hcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEE
Confidence 99999999999999998864 333 23477 999999999999864
No 8
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-37 Score=286.02 Aligned_cols=290 Identities=25% Similarity=0.333 Sum_probs=206.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc------------------CEEeeecCccccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR------------------GAKIQLLDLPGIIEGAK 127 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~------------------g~~i~l~DtpG~~~~~~ 127 (381)
.++||||.||+|||||||+||.....++||||||++|+.|.+... ..++.++|.||++++++
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 689999999999999999999999889999999999999987641 24689999999999999
Q ss_pred CCCcchhhhhcccCCcchhHHHHhcC------------CChHHHHHHHHHHHhccc-ccccCcCcccceeeccccceeee
Q 016864 128 DGKGRGRQVISTARTCNCILIVLDAI------------KPITHKRLIEKELEGFGI-RLNKQPPNLTFRKKDKGGINFTS 194 (381)
Q Consensus 128 ~~~~~~~~~~~~~~~~d~il~vvd~~------------~~~~~~~~i~~~l~~~~~-~~~~~~~~ls~~~~~r~~~~i~~ 194 (381)
.|.|++|++++.++++|+|+||||++ +|..+.+.+..+|..|.+ .+.+.+..++..-+....+....
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k~~ 162 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDKEL 162 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 99999999999999999999999987 478899999999999888 55555555443322211000000
Q ss_pred cccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhc-ccccccEEEEEecCCcCCHH---HHHHHhc-----C
Q 016864 195 TVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEG-SRIYMPCIYVINKIDQITLE---ELEILDK-----L 265 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~-~~~~~p~i~v~NK~Dl~~~~---~l~~l~~-----~ 265 (381)
.+.++.+ ..+...|.+.+... . .....|+.+++...-.. ....||+|+++||.|....+ .++.+.+ .
T Consensus 163 ~~~l~~l--~~~~~~l~~~~~~~-~-~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~ 238 (372)
T COG0012 163 KEELSLL--GKLEEHLEEGKPAR-G-LDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELAAKEN 238 (372)
T ss_pred HHHHHHH--HhHHHHHHhhhhhh-c-CCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccchhHHHHHHHHHhhhcC
Confidence 0000000 01111111111000 0 02345666665544333 22248999999999987532 2444432 2
Q ss_pred CCeeeecccccc-----------------------cHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCCCCHHHH
Q 016864 266 PHYCPVSAHLEW-----------------------NLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKRTVEDF 322 (381)
Q Consensus 266 ~~~v~vSa~~~~-----------------------gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (381)
..+|++||..+. |++++....+..+++..++|..+.+.+.|+. +++++..++
T Consensus 239 ~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti-----~~g~kap~a 313 (372)
T COG0012 239 AEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTI-----KDGSKAPDA 313 (372)
T ss_pred CcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHHHhhcCCeEEEEEe-----ccCCccccc
Confidence 368999997654 4555566667778888888887655555543 778999999
Q ss_pred HHHHHHHHHhcccEEEEecCC----------CccCCee--eCCCcccccCCCCC
Q 016864 323 CERIHKDMVKQFKYALVWGSS----------AKHKPQR--VGKEHELEDEXXXX 364 (381)
Q Consensus 323 ~~~i~~~~~~~f~~a~~~~~~----------~~~~~~r--vg~~~~l~~~d~~~ 364 (381)
++.||+|+...|+.|.+.+.+ ++..+.+ +|++|+++||||+.
T Consensus 314 aG~Ih~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~ 367 (372)
T COG0012 314 AGVIHPDFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIH 367 (372)
T ss_pred CCccccchhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEE
Confidence 999999999999999998766 3333433 99999999999993
No 9
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.98 E-value=1e-32 Score=251.90 Aligned_cols=292 Identities=22% Similarity=0.303 Sum_probs=212.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc-----------------CEEeeecCcccccccccC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR-----------------GAKIQLLDLPGIIEGAKD 128 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~-----------------g~~i~l~DtpG~~~~~~~ 128 (381)
..+||||.||+|||||||+||......++|||||+||..+.+... ...++++|++|+.++++.
T Consensus 21 lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~ 100 (391)
T KOG1491|consen 21 LKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASA 100 (391)
T ss_pred ceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCccc
Confidence 699999999999999999999998889999999999999988541 246899999999999999
Q ss_pred CCcchhhhhcccCCcchhHHHHhcC------------CChHHHHHHHHHHHhccc-ccccCcCcccceeeccccceeeec
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAI------------KPITHKRLIEKELEGFGI-RLNKQPPNLTFRKKDKGGINFTST 195 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~------------~~~~~~~~i~~~l~~~~~-~~~~~~~~ls~~~~~r~~~~i~~~ 195 (381)
|.|.++.+++.++.+|.+++|++++ +|..+.+++.++|..+.. .+.+++..++...+.... ++..
T Consensus 101 G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k~~e~~~k~~~~~~~-~~~~- 178 (391)
T KOG1491|consen 101 GEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEKRLEKLEKKHKRTKS-NLET- 178 (391)
T ss_pred CcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHHHHHHHhhhhhcccC-cHHH-
Confidence 9999999999999999999999875 478899999999998887 555556555544333211 0000
Q ss_pred ccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcc-cccccEEEEEecCCcCCH----HHHHHHhcC-----
Q 016864 196 VTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGS-RIYMPCIYVINKIDQITL----EELEILDKL----- 265 (381)
Q Consensus 196 ~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~-~~~~p~i~v~NK~Dl~~~----~~l~~l~~~----- 265 (381)
.......+.+..+.+.+.-....+.....|+.+++.-+.... ...+|+|+++|++|..-. .++..+..+
T Consensus 179 -~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~dy~r~knk~l~~i~~w~~~~~ 257 (391)
T KOG1491|consen 179 -KQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEHDYARKKNKKLPKIKEWVDEVS 257 (391)
T ss_pred -HHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCcchhhhHHHHHHhhhhhhhhccC
Confidence 000111233444444443233333444667655544443331 224899999999997632 223322222
Q ss_pred --CCeeeecccccc---------------------cHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCCCCHHHH
Q 016864 266 --PHYCPVSAHLEW---------------------NLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKRTVEDF 322 (381)
Q Consensus 266 --~~~v~vSa~~~~---------------------gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (381)
..++++|+.-+. .+.++....+..++++.+||.++.+...|.. +.++++.++
T Consensus 258 ~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~s~L~~iI~~~~~~L~li~fFt~G~~eV~~WtI-----r~gt~ap~a 332 (391)
T KOG1491|consen 258 PGDVVIVFSAAFESQLFELYEEEAVKELEDLGDSSALPKIIKTGYSALNLIVFFTCGEDEVRAWTI-----RKGTKAPQA 332 (391)
T ss_pred CCCeEEEehHHHHHHhhccCHHHHHHHHHhcccccchhHHHHHHHHhhCceEEEeeCCchheeeeh-----hhccccccc
Confidence 236677765443 4556677778899999999999887778876 777999999
Q ss_pred HHHHHHHHHhcccEEEEecCC----------CccCC--eeeCCCcccccCCCCCC
Q 016864 323 CERIHKDMVKQFKYALVWGSS----------AKHKP--QRVGKEHELEDEXXXXX 365 (381)
Q Consensus 323 ~~~i~~~~~~~f~~a~~~~~~----------~~~~~--~rvg~~~~l~~~d~~~i 365 (381)
+..||.|+.+.|..|.+.... ++..| .|+|++|+++||||+.+
T Consensus 333 agvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGDIi~F 387 (391)
T KOG1491|consen 333 AGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGDIIFF 387 (391)
T ss_pred cceeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCCEEEE
Confidence 999999999999999887655 11112 49999999999999865
No 10
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.96 E-value=1.9e-30 Score=246.74 Aligned_cols=284 Identities=22% Similarity=0.229 Sum_probs=197.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcC-----------------EEeeecCccccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRG-----------------AKIQLLDLPGIIEGAK 127 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g-----------------~~i~l~DtpG~~~~~~ 127 (381)
.++||||.||+|||||||+||+... ++++|||||++|..|++.+.+ ..+.++|.||++++++
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 5899999999999999999999998 899999999999999998765 3689999999999999
Q ss_pred CCCcchhhhhcccCCcchhHHHHhcC------------CChHHHHHHHHHHHhcccc-cccCcCcccceeeccccceeee
Q 016864 128 DGKGRGRQVISTARTCNCILIVLDAI------------KPITHKRLIEKELEGFGIR-LNKQPPNLTFRKKDKGGINFTS 194 (381)
Q Consensus 128 ~~~~~~~~~~~~~~~~d~il~vvd~~------------~~~~~~~~i~~~l~~~~~~-~~~~~~~ls~~~~~r~~~~i~~ 194 (381)
.|.+.+++++..++++|+++||+|++ +|..+.+.+..+|..+... ..+....+....+.... .
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~~k~-~--- 158 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEGGKD-K--- 158 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcchh-h---
Confidence 99999999999999999999999985 3567888888888877662 33333333221110000 0
Q ss_pred cccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcc--cccccEEEEEecCC--cC-C-HHHHH--HH-hc-
Q 016864 195 TVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGS--RIYMPCIYVINKID--QI-T-LEELE--IL-DK- 264 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~--~~~~p~i~v~NK~D--l~-~-~~~l~--~l-~~- 264 (381)
....+.++.+...+ .....+. ..+++.+ ....++.. ...+|+++|+|=-+ +. . ..... .+ ..
T Consensus 159 -----~~e~~ll~~~~~~L-e~~~~~r-~~~~~~e-e~~~~~~~~llt~Kp~~~v~N~~e~~~~~~n~~~~~~~~~~~~~ 230 (368)
T TIGR00092 159 -----KEELLLLEIILPLL-NGGQMAR-HVDLSKE-ELILIKSLNLLTKKPIILIANVSEDYLRNLNNNYLLIVEWIAAY 230 (368)
T ss_pred -----HHHHHHHHHHHHHH-hCCCeec-cCCCCHH-HHHHHHhCcchhhCCEEEEEECCHHHhhhcccHHHHHHHHHhhc
Confidence 00011222222222 1222221 1233333 34444441 12378888887432 11 1 11111 12 11
Q ss_pred ---CCCeeeeccccc----------------------c-cHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCCCC
Q 016864 265 ---LPHYCPVSAHLE----------------------W-NLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKRT 318 (381)
Q Consensus 265 ---~~~~v~vSa~~~----------------------~-gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (381)
...++++||.-+ . +++.+....++++++..+||.++.+.++|+. +.+++
T Consensus 231 ~~~~~~~~~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT~g~~EvRaWti-----~~G~~ 305 (368)
T TIGR00092 231 SKGDPKVVFVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFTGGKEEVRAWTR-----KGGWA 305 (368)
T ss_pred CcCCCeEEEeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEcCCCceeEEeec-----CCCCc
Confidence 223555665322 2 6667888889999999999998877778876 77899
Q ss_pred HHHHHHHHHHHHHhcccEEEEecCC----------CccCC--eeeCCCcccccCCCCCCC
Q 016864 319 VEDFCERIHKDMVKQFKYALVWGSS----------AKHKP--QRVGKEHELEDEXXXXXX 366 (381)
Q Consensus 319 ~~~~~~~i~~~~~~~f~~a~~~~~~----------~~~~~--~rvg~~~~l~~~d~~~i~ 366 (381)
+.++|+.||+||+++|..|.|.+++ ++..| +..|++|+++||||+.+-
T Consensus 306 Ap~AAG~IHsDfekgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f~ 365 (368)
T TIGR00092 306 APQAAGIIHTDFETGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFFA 365 (368)
T ss_pred hhHhcCCcccccccCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEEe
Confidence 9999999999999999999999886 33333 478999999999998763
No 11
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.94 E-value=9.2e-28 Score=226.98 Aligned_cols=220 Identities=25% Similarity=0.332 Sum_probs=171.1
Q ss_pred EEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEE------------------------cCEEeeecCccccc
Q 016864 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITY------------------------RGAKIQLLDLPGII 123 (381)
Q Consensus 68 i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~------------------------~g~~i~l~DtpG~~ 123 (381)
|+|||.||||||||||+||+....+++|||||++|+.|...+ .+.+++++||||++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 689999999999999999999888999999999999998764 23689999999999
Q ss_pred ccccCCCcchhhhhcccCCcchhHHHHhcC---------------CChHHHHHHHHHHHhccc-ccccCcCcccceeecc
Q 016864 124 EGAKDGKGRGRQVISTARTCNCILIVLDAI---------------KPITHKRLIEKELEGFGI-RLNKQPPNLTFRKKDK 187 (381)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~d~il~vvd~~---------------~~~~~~~~i~~~l~~~~~-~~~~~~~~ls~~~~~r 187 (381)
+++..+.+.++++++.++++|+++||+|++ +|..+.+.+..+|..|.. .+.+++..+.... .+
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~-~~ 159 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA-DA 159 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 998888888999999999999999999987 357789999999999865 4555555554211 12
Q ss_pred ccceee--ec--ccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH-HHH
Q 016864 188 GGINFT--ST--VTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL-EIL 262 (381)
Q Consensus 188 ~~~~i~--~~--~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l-~~l 262 (381)
++..+. .. ....+.+.+.+..+|+. +...+.+..|++.+.+++.+.+... .+|+|+|+||+|+...++. +.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~~~~~~~~~~~~~llt--~KPvI~VlNK~Dl~~~~~~~~~l 236 (318)
T cd01899 160 EKTDIVEALSEQLSGFGVNEKDVIEALEE-LELPEDLSKWTDEDLLRLARALRKR--SKPMVIAANKADIPDAENNISKL 236 (318)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHh-CCCCCcccCCCHHHHHHHHHHHHhc--CCcEEEEEEHHHccChHHHHHHH
Confidence 222211 11 12235677888899866 5556677778877888888877653 3799999999998755432 222
Q ss_pred ---hcCCCeeeecccccccHHHHHH-HHHHHcC
Q 016864 263 ---DKLPHYCPVSAHLEWNLDGLLE-KIWEYLN 291 (381)
Q Consensus 263 ---~~~~~~v~vSa~~~~gl~~L~~-~i~~~l~ 291 (381)
..+..++++||+.+.++++|.+ .+.+.++
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 2356799999999999999998 5998886
No 12
>COG2262 HflX GTPases [General function prediction only]
Probab=99.93 E-value=2.5e-26 Score=216.46 Aligned_cols=195 Identities=32% Similarity=0.380 Sum_probs=148.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEE
Q 016864 27 HLGLLKAKLAKLRRELLTPTSKGGGGGGGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGV 106 (381)
Q Consensus 27 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~ 106 (381)
..+.++.++.+|+++++........... ...+.+.+.|+|||++|||||||||+|||....+.+..|+|.||....
T Consensus 158 drR~ir~rI~~i~~eLe~v~~~R~~~R~----~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~ 233 (411)
T COG2262 158 DRRRIRRRIAKLKRELENVEKAREPRRK----KRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRR 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeE
Confidence 3456677777777776544321110000 122346789999999999999999999999999999999999999999
Q ss_pred EEEc-CEEeeecCcccccccccCCC-cchhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCccccee
Q 016864 107 ITYR-GAKIQLLDLPGIIEGAKDGK-GRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRK 184 (381)
Q Consensus 107 i~~~-g~~i~l~DtpG~~~~~~~~~-~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~ 184 (381)
+.+. |.++.+.||.||+...+... ..++..++...++|+++||||+++|... +.
T Consensus 234 ~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~-~~----------------------- 289 (411)
T COG2262 234 IELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEIL-EK----------------------- 289 (411)
T ss_pred EEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHH-HH-----------------------
Confidence 9987 68999999999999887765 3567888888999999999999998321 11
Q ss_pred eccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH-HHHHh
Q 016864 185 KDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-LEILD 263 (381)
Q Consensus 185 ~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-l~~l~ 263 (381)
.+.+..+|.+++... +|+|+|+||+|....+. +..+.
T Consensus 290 ------------------~~~v~~vL~el~~~~------------------------~p~i~v~NKiD~~~~~~~~~~~~ 327 (411)
T COG2262 290 ------------------LEAVEDVLAEIGADE------------------------IPIILVLNKIDLLEDEEILAELE 327 (411)
T ss_pred ------------------HHHHHHHHHHcCCCC------------------------CCEEEEEecccccCchhhhhhhh
Confidence 134455666655432 69999999999886554 33333
Q ss_pred cC-CCeeeecccccccHHHHHHHHHHHcC
Q 016864 264 KL-PHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 264 ~~-~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.. +..|++||+++.|++.|.+.|.+.+.
T Consensus 328 ~~~~~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 328 RGSPNPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred hcCCCeEEEEeccCcCHHHHHHHHHHHhh
Confidence 33 35899999999999999999999876
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=1.8e-25 Score=189.12 Aligned_cols=147 Identities=32% Similarity=0.433 Sum_probs=106.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCC-cc-hhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK-GR-GRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~-~~-~~~~~~~~~~~ 143 (381)
.+|+++|.||||||||||+|+|....++++||+|++...|.+.+++.++.++|+||++...+... .. ...++ .....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l-~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYL-LSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHH-HHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHH-hhcCC
Confidence 37999999999999999999999999999999999999999999999999999999877543321 11 12222 23689
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++....+...+.+ ++ ++
T Consensus 80 D~ii~VvDa~~l~r~l~l~~q--------------------------------------------l~-e~---------- 104 (156)
T PF02421_consen 80 DLIIVVVDATNLERNLYLTLQ--------------------------------------------LL-EL---------- 104 (156)
T ss_dssp SEEEEEEEGGGHHHHHHHHHH--------------------------------------------HH-HT----------
T ss_pred CEEEEECCCCCHHHHHHHHHH--------------------------------------------HH-Hc----------
Confidence 999999999875433221111 11 11
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-------HHHHHHhcCCCeeeecccccccHHHHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-------EELEILDKLPHYCPVSAHLEWNLDGLLEKI 286 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-------~~l~~l~~~~~~v~vSa~~~~gl~~L~~~i 286 (381)
.+|+|+|+||+|+... +.+.... ..+++++||+++.|+++|.++|
T Consensus 105 -----------------g~P~vvvlN~~D~a~~~g~~id~~~Ls~~L-g~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 105 -----------------GIPVVVVLNKMDEAERKGIEIDAEKLSERL-GVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp -----------------TSSEEEEEETHHHHHHTTEEE-HHHHHHHH-TS-EEEEBTTTTBTHHHHHHHH
T ss_pred -----------------CCCEEEEEeCHHHHHHcCCEECHHHHHHHh-CCCEEEEEeCCCcCHHHHHhhC
Confidence 2799999999998743 2333322 3479999999999999999875
No 14
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.92 E-value=2e-25 Score=202.65 Aligned_cols=166 Identities=39% Similarity=0.551 Sum_probs=133.8
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE-EeeecCcccccccccCCCcchhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA-KIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~-~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
+.++..-..-|||||.||||||||||+|+...+.|++|+|||+.|.-|.+.|++. ++.+.|.||++++++...+++.++
T Consensus 189 ~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~F 268 (366)
T KOG1489|consen 189 IELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKF 268 (366)
T ss_pred EEEEeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHH
Confidence 3444445578999999999999999999999999999999999999999999864 599999999999999999999999
Q ss_pred hcccCCcchhHHHHhcCCC-----hHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHH
Q 016864 137 ISTARTCNCILIVLDAIKP-----ITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~-----~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~ 211 (381)
+.++..++.+++|+|.+.+ ..+.+.+..+|+.+.
T Consensus 269 LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye----------------------------------------- 307 (366)
T KOG1489|consen 269 LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYE----------------------------------------- 307 (366)
T ss_pred HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHh-----------------------------------------
Confidence 9999999999999999865 344444444443221
Q ss_pred HhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHH-H-HHHHhcC---CCeeeecccccccHHHHHHHH
Q 016864 212 EYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-E-LEILDKL---PHYCPVSAHLEWNLDGLLEKI 286 (381)
Q Consensus 212 ~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-~-l~~l~~~---~~~v~vSa~~~~gl~~L~~~i 286 (381)
.....+|.++|+||+|++..+ . ++.+... +.++++||+.++|+++|++.|
T Consensus 308 -------------------------k~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~l 362 (366)
T KOG1489|consen 308 -------------------------KGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGL 362 (366)
T ss_pred -------------------------hhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHH
Confidence 111237999999999996433 2 3555433 348999999999999999988
Q ss_pred HHH
Q 016864 287 WEY 289 (381)
Q Consensus 287 ~~~ 289 (381)
.+.
T Consensus 363 r~~ 365 (366)
T KOG1489|consen 363 REL 365 (366)
T ss_pred hhc
Confidence 653
No 15
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.92 E-value=4.1e-25 Score=203.11 Aligned_cols=168 Identities=36% Similarity=0.495 Sum_probs=135.9
Q ss_pred EEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc-CEEeeecCcccccccccCCCcchhhhhc
Q 016864 60 VTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR-GAKIQLLDLPGIIEGAKDGKGRGRQVIS 138 (381)
Q Consensus 60 ~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~-g~~i~l~DtpG~~~~~~~~~~~~~~~~~ 138 (381)
++..-..-|||||.||||||||+++++...+.+++|||||+.|.-|.+... +..+.+.|.||++++++.|.+.+.+++.
T Consensus 154 LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLr 233 (369)
T COG0536 154 LELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLR 233 (369)
T ss_pred EEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHH
Confidence 333334579999999999999999999999999999999999999999974 5679999999999999999999999999
Q ss_pred ccCCcchhHHHHhcCC-----ChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHh
Q 016864 139 TARTCNCILIVLDAIK-----PITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEY 213 (381)
Q Consensus 139 ~~~~~d~il~vvd~~~-----~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~ 213 (381)
++..+-+++||||.+. |.++.+.+..+|+.+..
T Consensus 234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~------------------------------------------ 271 (369)
T COG0536 234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP------------------------------------------ 271 (369)
T ss_pred HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH------------------------------------------
Confidence 9999999999999863 46677777777665433
Q ss_pred cccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcC-CHHHHHHH----hc---CCCeeeecccccccHHHHHHH
Q 016864 214 RIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQI-TLEELEIL----DK---LPHYCPVSAHLEWNLDGLLEK 285 (381)
Q Consensus 214 ~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~-~~~~l~~l----~~---~~~~v~vSa~~~~gl~~L~~~ 285 (381)
....+|.++|+||+|++ ..+.++.+ .+ +...+++||.++.|++.|+..
T Consensus 272 ------------------------~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~ 327 (369)
T COG0536 272 ------------------------KLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRA 327 (369)
T ss_pred ------------------------HhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHH
Confidence 01137999999999955 44444432 21 222233999999999999999
Q ss_pred HHHHcCCc
Q 016864 286 IWEYLNLT 293 (381)
Q Consensus 286 i~~~l~~~ 293 (381)
+++.+...
T Consensus 328 ~~~~l~~~ 335 (369)
T COG0536 328 LAELLEET 335 (369)
T ss_pred HHHHHHHh
Confidence 99887643
No 16
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=3.5e-24 Score=205.98 Aligned_cols=192 Identities=29% Similarity=0.359 Sum_probs=132.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEE
Q 016864 28 LGLLKAKLAKLRRELLTPTSKGGGGGGGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVI 107 (381)
Q Consensus 28 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i 107 (381)
.+.+++++.+++++++.....+..+.. ...+++..+|+|+|+||||||||+|+|+|....+++++|+|+|+..+.+
T Consensus 156 ~~~i~~ri~~l~~~L~~~~~~~~~~r~----~r~~~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i 231 (351)
T TIGR03156 156 RRLIRERIAQLKKELEKVEKQRERQRR----RRKRADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRL 231 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----hhcccCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEE
Confidence 345666777777766544321111100 1122355899999999999999999999988777899999999999999
Q ss_pred EE-cCEEeeecCcccccccccCC-CcchhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceee
Q 016864 108 TY-RGAKIQLLDLPGIIEGAKDG-KGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKK 185 (381)
Q Consensus 108 ~~-~g~~i~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~ 185 (381)
.+ +|.++.++||||++...+.. ...+...+..+.++|++++|+|++++....+ +
T Consensus 232 ~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~-~----------------------- 287 (351)
T TIGR03156 232 DLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQ-I----------------------- 287 (351)
T ss_pred EeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHH-H-----------------------
Confidence 98 57899999999996543221 1223445556789999999999998742111 0
Q ss_pred ccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHHh-c
Q 016864 186 DKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEILD-K 264 (381)
Q Consensus 186 ~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l~-~ 264 (381)
..+..++..++. ..+|+++|+||+|+.....+..+. .
T Consensus 288 ------------------~~~~~~L~~l~~------------------------~~~piIlV~NK~Dl~~~~~v~~~~~~ 325 (351)
T TIGR03156 288 ------------------EAVEKVLEELGA------------------------EDIPQLLVYNKIDLLDEPRIERLEEG 325 (351)
T ss_pred ------------------HHHHHHHHHhcc------------------------CCCCEEEEEEeecCCChHhHHHHHhC
Confidence 011122222211 126999999999998655443332 2
Q ss_pred CCCeeeecccccccHHHHHHHHHHH
Q 016864 265 LPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 265 ~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
+.+++++||+++.|+++|.+.+.+.
T Consensus 326 ~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHhh
Confidence 3468999999999999999998764
No 17
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.2e-23 Score=200.68 Aligned_cols=166 Identities=33% Similarity=0.465 Sum_probs=128.7
Q ss_pred EEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEE-cCEEeeecCcccccccccCCCcchhhhhc
Q 016864 60 VTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITY-RGAKIQLLDLPGIIEGAKDGKGRGRQVIS 138 (381)
Q Consensus 60 ~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~-~g~~i~l~DtpG~~~~~~~~~~~~~~~~~ 138 (381)
++..-...|+|||.||||||||+|+|++..+.+++|||||++|..|.+.+ ++.++.++||||+++.++.+.+...+++.
T Consensus 153 lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flr 232 (335)
T PRK12299 153 LELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLK 232 (335)
T ss_pred EEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHH
Confidence 33434568999999999999999999998888999999999999999998 56789999999999988888888889998
Q ss_pred ccCCcchhHHHHhcCCCh--HHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhccc
Q 016864 139 TARTCNCILIVLDAIKPI--THKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIH 216 (381)
Q Consensus 139 ~~~~~d~il~vvd~~~~~--~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~ 216 (381)
.+..++++++|+|++++. ++.+.+..+|..+
T Consensus 233 hie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~----------------------------------------------- 265 (335)
T PRK12299 233 HIERTRLLLHLVDIEAVDPVEDYKTIRNELEKY----------------------------------------------- 265 (335)
T ss_pred HhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHh-----------------------------------------------
Confidence 999999999999998642 2222222222110
Q ss_pred CCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH-----HHH-hcC-CCeeeecccccccHHHHHHHHHHH
Q 016864 217 NADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL-----EIL-DKL-PHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 217 ~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l-----~~l-~~~-~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
. .....+|.++|+||+|+...... +.. ... .+++++||+++.|+++|++.+.+.
T Consensus 266 ~-------------------~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~ 326 (335)
T PRK12299 266 S-------------------PELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWEL 326 (335)
T ss_pred h-------------------hhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 0 00012699999999999744321 111 122 468999999999999999999887
Q ss_pred cC
Q 016864 290 LN 291 (381)
Q Consensus 290 l~ 291 (381)
+.
T Consensus 327 l~ 328 (335)
T PRK12299 327 LE 328 (335)
T ss_pred HH
Confidence 64
No 18
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1e-23 Score=208.55 Aligned_cols=178 Identities=30% Similarity=0.442 Sum_probs=133.0
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+.++......|+|||.||||||||+|+|++..+.+++|||||++|+.|.+.+++.++.++||||+++.++.+.+...+++
T Consensus 152 ~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fL 231 (500)
T PRK12296 152 LVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFL 231 (500)
T ss_pred EEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHH
Confidence 34455556799999999999999999999998889999999999999999999999999999999998887777778888
Q ss_pred cccCCcchhHHHHhcCC------ChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHH
Q 016864 138 STARTCNCILIVLDAIK------PITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 138 ~~~~~~d~il~vvd~~~------~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~ 211 (381)
..+..+|+++||+|+++ |..+.+.+..+|..+...+..
T Consensus 232 rhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~------------------------------------ 275 (500)
T PRK12296 232 RHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDG------------------------------------ 275 (500)
T ss_pred HHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccc------------------------------------
Confidence 88999999999999974 333344444433322110000
Q ss_pred HhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH-----HHhc-CCCeeeecccccccHHHHHHH
Q 016864 212 EYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE-----ILDK-LPHYCPVSAHLEWNLDGLLEK 285 (381)
Q Consensus 212 ~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~-----~l~~-~~~~v~vSa~~~~gl~~L~~~ 285 (381)
++. .. ....+|.|+|+||+|++...++. .+.. ..+++++||.++.|+++|+..
T Consensus 276 --------------~~~---~~----~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~ 334 (500)
T PRK12296 276 --------------DLG---LG----DLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFA 334 (500)
T ss_pred --------------cch---hh----hhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 000 00 01137999999999997543321 1222 246899999999999999999
Q ss_pred HHHHcCC
Q 016864 286 IWEYLNL 292 (381)
Q Consensus 286 i~~~l~~ 292 (381)
+.+.+..
T Consensus 335 L~ell~~ 341 (500)
T PRK12296 335 LAELVEE 341 (500)
T ss_pred HHHHHHh
Confidence 8877643
No 19
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.90 E-value=4.4e-24 Score=204.83 Aligned_cols=159 Identities=31% Similarity=0.374 Sum_probs=123.3
Q ss_pred eEEecCCcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCccccccccc----CCCcch
Q 016864 59 DVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAK----DGKGRG 133 (381)
Q Consensus 59 ~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~----~~~~~~ 133 (381)
.+.++| .+++|+|+||||||||||+|++.+. .|++.||||+|.....+.++|.++.++||+|+++... .|+
T Consensus 212 ~ilr~G-~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGI--- 287 (454)
T COG0486 212 KILREG-LKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGI--- 287 (454)
T ss_pred hhhhcC-ceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHH---
Confidence 455656 9999999999999999999999986 5699999999999999999999999999999997542 233
Q ss_pred hhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHh
Q 016864 134 RQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEY 213 (381)
Q Consensus 134 ~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~ 213 (381)
.+....+.+||++++|+|++.+....+. .++.
T Consensus 288 eRs~~~i~~ADlvL~v~D~~~~~~~~d~----------------------------------------------~~~~-- 319 (454)
T COG0486 288 ERAKKAIEEADLVLFVLDASQPLDKEDL----------------------------------------------ALIE-- 319 (454)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCchhhH----------------------------------------------HHHH--
Confidence 3344467899999999999986321110 0000
Q ss_pred cccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHH--hcCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 214 RIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEIL--DKLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 214 ~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l--~~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
. ....+|.++|.||.|+.+......+ ....+++.+||+++.|++.|.+.+...+.
T Consensus 320 --------------------~---~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 320 --------------------L---LPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred --------------------h---cccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 0 0112799999999999976554332 33345899999999999999999988776
Q ss_pred C
Q 016864 292 L 292 (381)
Q Consensus 292 ~ 292 (381)
.
T Consensus 377 ~ 377 (454)
T COG0486 377 K 377 (454)
T ss_pred h
Confidence 3
No 20
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.8e-23 Score=203.35 Aligned_cols=162 Identities=30% Similarity=0.482 Sum_probs=124.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC-EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG-AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g-~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
..-|+|||+||||||||+|+|++....++++||||+.|..|.+.+.+ ..+.++||||+.+.++.+.+...+++..+..+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 35899999999999999999999888899999999999999999875 56999999999988877777778888889999
Q ss_pred chhHHHHhcCC-----ChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCC
Q 016864 144 NCILIVLDAIK-----PITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNA 218 (381)
Q Consensus 144 d~il~vvd~~~-----~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~ 218 (381)
|++++|+|++. +..+...+..++.. +.
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~--------------------------------------------~~---- 270 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEK--------------------------------------------YS---- 270 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHh--------------------------------------------hh----
Confidence 99999999872 12222222222111 00
Q ss_pred ccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----HHHhc---C-CCeeeecccccccHHHHHHHHHHHc
Q 016864 219 DITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----EILDK---L-PHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 219 ~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~l~~---~-~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....+|.|+|+||+|+...+++ ..+.+ + ..++++||+++.|+++|++.+.+.+
T Consensus 271 ------------------~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 271 ------------------PKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred ------------------hhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 00012699999999999765433 22222 2 2689999999999999999999987
Q ss_pred CC
Q 016864 291 NL 292 (381)
Q Consensus 291 ~~ 292 (381)
+.
T Consensus 333 ~~ 334 (390)
T PRK12298 333 EE 334 (390)
T ss_pred hh
Confidence 63
No 21
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=9.9e-24 Score=201.89 Aligned_cols=156 Identities=31% Similarity=0.402 Sum_probs=123.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCC--CcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG--KGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~--~~~~~~~~~~~~~ 142 (381)
+.|+|||.||+|||||||+|+|... .++++||+|+|...+...|.|..+.++||+|+.+....+ .....|.+.++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999874 679999999999999999999999999999998655332 2345677778899
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
||++++|+|+..+....+ +.+..+|..
T Consensus 84 ADvilfvVD~~~Git~~D-------------------------------------------~~ia~~Lr~---------- 110 (444)
T COG1160 84 ADVILFVVDGREGITPAD-------------------------------------------EEIAKILRR---------- 110 (444)
T ss_pred CCEEEEEEeCCCCCCHHH-------------------------------------------HHHHHHHHh----------
Confidence 999999999987532211 122222221
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH-HHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL-EILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l-~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
..+|+|+|+||+|-...+.. ..++ .+...+++||.+|.|+.+|++++.+.++
T Consensus 111 -----------------~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 111 -----------------SKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred -----------------cCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 12799999999998744432 2222 4678899999999999999999999874
No 22
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.89 E-value=4.5e-23 Score=196.66 Aligned_cols=165 Identities=35% Similarity=0.489 Sum_probs=127.1
Q ss_pred EEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC-EEeeecCcccccccccCCCcchhhhhc
Q 016864 60 VTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG-AKIQLLDLPGIIEGAKDGKGRGRQVIS 138 (381)
Q Consensus 60 ~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g-~~i~l~DtpG~~~~~~~~~~~~~~~~~ 138 (381)
++..-...|+|||.||||||||+|+|++....+++|||||++|..|.+.+++ ..+.++||||+++.++.+.+...+++.
T Consensus 152 lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flr 231 (329)
T TIGR02729 152 LELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLK 231 (329)
T ss_pred EEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHH
Confidence 3333456899999999999999999999888899999999999999999987 899999999999988777777888888
Q ss_pred ccCCcchhHHHHhcCCC-----hHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHh
Q 016864 139 TARTCNCILIVLDAIKP-----ITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEY 213 (381)
Q Consensus 139 ~~~~~d~il~vvd~~~~-----~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~ 213 (381)
.+..++++++|+|+++. ..+...+..+|. .+
T Consensus 232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~--------------------------------------------~~ 267 (329)
T TIGR02729 232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELK--------------------------------------------KY 267 (329)
T ss_pred HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHH--------------------------------------------Hh
Confidence 88899999999998753 222222222211 10
Q ss_pred cccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH----HHhc--CCCeeeecccccccHHHHHHHHH
Q 016864 214 RIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE----ILDK--LPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 214 ~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~----~l~~--~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
. .....+|.++|+||+|+...+..+ .+.+ ...++++||++++|+++|++.+.
T Consensus 268 ~----------------------~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~ 325 (329)
T TIGR02729 268 S----------------------PELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALA 325 (329)
T ss_pred h----------------------hhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHH
Confidence 0 000127999999999997654332 2221 23689999999999999999998
Q ss_pred HHc
Q 016864 288 EYL 290 (381)
Q Consensus 288 ~~l 290 (381)
+.+
T Consensus 326 ~~l 328 (329)
T TIGR02729 326 ELL 328 (329)
T ss_pred HHh
Confidence 765
No 23
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=4.6e-23 Score=201.48 Aligned_cols=161 Identities=39% Similarity=0.549 Sum_probs=127.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc-CEEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR-GAKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~-g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
...|+|||.||||||||+|+|++..+.+++|||||++|+.|.+.++ +..+.++||||+.+.++.+.+.+.+++..+..+
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 3589999999999999999999998889999999999999999987 789999999999998888888888999888999
Q ss_pred chhHHHHhcCCC-----hHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCC
Q 016864 144 NCILIVLDAIKP-----ITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNA 218 (381)
Q Consensus 144 d~il~vvd~~~~-----~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~ 218 (381)
+++++|+|+++. ..+...+..+|..+.-
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~----------------------------------------------- 270 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNP----------------------------------------------- 270 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhch-----------------------------------------------
Confidence 999999999743 2233333333221100
Q ss_pred ccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHH-HHHHHhc-C-CCeeeecccccccHHHHHHHHHHHcC
Q 016864 219 DITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-ELEILDK-L-PHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 219 ~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-~l~~l~~-~-~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
....+|.|+|+||+|+.... .++.+.+ + .+++++||+++.|+++|++.+.+.+.
T Consensus 271 -------------------~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~ 327 (424)
T PRK12297 271 -------------------RLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLE 327 (424)
T ss_pred -------------------hccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 01127999999999986432 2333322 1 46899999999999999999988765
No 24
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=6.2e-23 Score=186.63 Aligned_cols=155 Identities=35% Similarity=0.399 Sum_probs=122.7
Q ss_pred EEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCccccccccc-CCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAK-DGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~d 144 (381)
.|||||+||||||||+|+|.|... .+|+.|.||+....|.+..+..++.|+||||+.+..+ .+..+.....+.+.++|
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvD 87 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVD 87 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCc
Confidence 899999999999999999999875 5699999999999999999999999999999987632 23334556667889999
Q ss_pred hhHHHHhcCCChHH-HHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 145 CILIVLDAIKPITH-KRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 145 ~il~vvd~~~~~~~-~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
++++|+|+.++... .+.+.+ .|
T Consensus 88 lilfvvd~~~~~~~~d~~il~--------------------------------------------~l------------- 110 (298)
T COG1159 88 LILFVVDADEGWGPGDEFILE--------------------------------------------QL------------- 110 (298)
T ss_pred EEEEEEeccccCCccHHHHHH--------------------------------------------HH-------------
Confidence 99999999875321 111111 11
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHHH-HH-------HHhcCCCeeeecccccccHHHHHHHHHHHcCC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-LE-------ILDKLPHYCPVSAHLEWNLDGLLEKIWEYLNL 292 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-l~-------~l~~~~~~v~vSa~~~~gl~~L~~~i~~~l~~ 292 (381)
+. ...|.|+++||+|....+. +. ....|..++++||.++.+++.|.+.+.+.++.
T Consensus 111 ------------k~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 111 ------------KK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred ------------hh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 11 0159999999999886554 22 22346789999999999999999999999874
No 25
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.88 E-value=3.1e-22 Score=200.38 Aligned_cols=222 Identities=20% Similarity=0.287 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHH--hcCCC---------------------------CCCCCCC
Q 016864 3 TVMQKIKDIEDEMARTQKNKATAHHLGLLKAKLAKLRRE--LLTPT---------------------------SKGGGGG 53 (381)
Q Consensus 3 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~---------------------------~~~~~~~ 53 (381)
..+++++++++|++++.+++++.++.+.+.++++++... ..... ++++.+.
T Consensus 255 ~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~ 334 (530)
T COG0488 255 KQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG 334 (530)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC
Confidence 368899999999999999999888999999999999843 11111 1112111
Q ss_pred --CCCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCc
Q 016864 54 --GGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG 131 (381)
Q Consensus 54 --~~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~ 131 (381)
...++++....+.+|||||+||+|||||++.|+|...+ ..|.+.++ ..+.+ |++++...
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~-----------~~G~v~~g-~~v~i----gyf~Q~~~--- 395 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP-----------LSGTVKVG-ETVKI----GYFDQHRD--- 395 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc-----------CCceEEeC-CceEE----EEEEehhh---
Confidence 13355566656689999999999999999999998877 68988875 22333 44443211
Q ss_pred chhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccceeeecccCCCCCHHHHHH
Q 016864 132 RGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKA 208 (381)
Q Consensus 132 ~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~ 208 (381)
. ...+-+++-++-+.... .....++..|+.|++ ...+++..||+|++.| .
T Consensus 396 ----~--l~~~~t~~d~l~~~~~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~R--------------------l 448 (530)
T COG0488 396 ----E--LDPDKTVLEELSEGFPD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKAR--------------------L 448 (530)
T ss_pred ----h--cCccCcHHHHHHhhCcc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHH--------------------H
Confidence 1 11333555555554422 226778999999999 7788999999999988 6
Q ss_pred HHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH-HHhcCCCeeeecccccccHHHHHHHHH
Q 016864 209 ICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE-ILDKLPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 209 ~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~-~l~~~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
.|..+...++|++++|||| |++|+.+.+.++ .+..|.++|++.||++++++.+++.+|
T Consensus 449 ~La~ll~~~pNvLiLDEPT---------------------NhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~ 507 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPT---------------------NHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIW 507 (530)
T ss_pred HHHHHhccCCCEEEEcCCC---------------------ccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEE
Confidence 6777778899999999999 999999999884 578999999999999999999998887
Q ss_pred HHcC
Q 016864 288 EYLN 291 (381)
Q Consensus 288 ~~l~ 291 (381)
...+
T Consensus 508 ~~~~ 511 (530)
T COG0488 508 LVED 511 (530)
T ss_pred EEcC
Confidence 6554
No 26
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.88 E-value=3.3e-23 Score=191.52 Aligned_cols=204 Identities=25% Similarity=0.414 Sum_probs=140.0
Q ss_pred EEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE-----------------EeeecCcccccccccCCC
Q 016864 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA-----------------KIQLLDLPGIIEGAKDGK 130 (381)
Q Consensus 68 i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~-----------------~i~l~DtpG~~~~~~~~~ 130 (381)
|||||.||||||||||+||+....+++|||||++|..|.+.+.+. ++.++|+||++++++.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 689999999999999999999999999999999999999988664 599999999999998888
Q ss_pred cchhhhhcccCCcchhHHHHhcC------------CChHHHHHHHHHHHhccc-ccccCcCcccceeeccccceeeeccc
Q 016864 131 GRGRQVISTARTCNCILIVLDAI------------KPITHKRLIEKELEGFGI-RLNKQPPNLTFRKKDKGGINFTSTVT 197 (381)
Q Consensus 131 ~~~~~~~~~~~~~d~il~vvd~~------------~~~~~~~~i~~~l~~~~~-~~~~~~~~ls~~~~~r~~~~i~~~~~ 197 (381)
+.+++++..++.+|+++||||++ +|..+.+.+..+|..+.+ .+.+.+..+....+.. .-..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~-~~~~----- 154 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSG-DKEA----- 154 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc-cHHH-----
Confidence 89999999999999999999875 477888999999988877 3444444433211100 0000
Q ss_pred CCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhc--ccccccEEEEEecCC--cCCH-HHHHHHh-----cCCC
Q 016864 198 NTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEG--SRIYMPCIYVINKID--QITL-EELEILD-----KLPH 267 (381)
Q Consensus 198 ~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~--~~~~~p~i~v~NK~D--l~~~-~~l~~l~-----~~~~ 267 (381)
....+.+.++.+.+.. ...+. ..+|+.++.. .+.+ ....||+++++|+.| +... .....+. ....
T Consensus 155 --~~e~~~l~~~~~~L~~-~~~~~-~~~~~~~e~~-~l~~~~llt~KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~~~ 229 (274)
T cd01900 155 --KAELELLEKIKEHLEE-GKPAR-SLELTEEEIE-ILNSLQLLTAKPVLYVANVSEDDLANGNNKVLKVREIAAKEGAE 229 (274)
T ss_pred --HHHHHHHHHHHHHHHc-CCCcC-cCCCCHHHHH-HHHHHhHhhcCCceeecccCHHHhccccHHHHHHHHHHhcCCCe
Confidence 0001222333333221 11221 2477777643 3333 122489999999998 3221 1222221 1235
Q ss_pred eeeecccccccHHHH
Q 016864 268 YCPVSAHLEWNLDGL 282 (381)
Q Consensus 268 ~v~vSa~~~~gl~~L 282 (381)
++++||..+.-+.++
T Consensus 230 ~i~~sa~~E~eL~~l 244 (274)
T cd01900 230 VIPISAKIEAELAEL 244 (274)
T ss_pred EEEeeHHHHHHHHcC
Confidence 899999888776654
No 27
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=3.1e-22 Score=191.65 Aligned_cols=203 Identities=24% Similarity=0.288 Sum_probs=143.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCC--Cc--chhhhhcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG--KG--RGRQVIST 139 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~--~~--~~~~~~~~ 139 (381)
..+|||||.||+|||||+|+|+|... .+++.||||+|+....+.++|..+.++||+|+++..... .. .....+..
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 48999999999999999999999986 569999999999999999999999999999998754321 11 23345557
Q ss_pred cCCcchhHHHHhcCCChHHHH-HHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCC
Q 016864 140 ARTCNCILIVLDAIKPITHKR-LIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNA 218 (381)
Q Consensus 140 ~~~~d~il~vvd~~~~~~~~~-~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~ 218 (381)
+..+|++++|+|++.+..+++ .+.... .+
T Consensus 258 I~~a~vvllviDa~~~~~~qD~~ia~~i--------------------------------------------~~------ 287 (444)
T COG1160 258 IERADVVLLVIDATEGISEQDLRIAGLI--------------------------------------------EE------ 287 (444)
T ss_pred HhhcCEEEEEEECCCCchHHHHHHHHHH--------------------------------------------HH------
Confidence 789999999999999854322 221111 11
Q ss_pred ccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHH--HHH----HH------hcCCCeeeecccccccHHHHHHHH
Q 016864 219 DITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE--ELE----IL------DKLPHYCPVSAHLEWNLDGLLEKI 286 (381)
Q Consensus 219 ~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~--~l~----~l------~~~~~~v~vSa~~~~gl~~L~~~i 286 (381)
..++.|+|+||+|+...+ .++ .+ ..|.+++++||+++.|+++|++.+
T Consensus 288 ---------------------~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i 346 (444)
T COG1160 288 ---------------------AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAI 346 (444)
T ss_pred ---------------------cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHH
Confidence 127999999999987542 121 11 246789999999999999988765
Q ss_pred HHHcC--CcEEEe---------------CC-C-CCC--------CCCCCcEEe-cCCCCCHHHHHHHHHHHHHhcccEEE
Q 016864 287 WEYLN--LTRIYT---------------KP-K-GMN--------PDYEDPVIL-SSKKRTVEDFCERIHKDMVKQFKYAL 338 (381)
Q Consensus 287 ~~~l~--~~~~~~---------------~~-~-~~~--------~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~f~~a~ 338 (381)
.+... ..++-| ++ . |.. ....+|.++ .. .....+-++|.+++.++|+.+.
T Consensus 347 ~~~~~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki~Ya~q~~~~PP~fvlf~--N~~~~~~~sY~RyL~n~~R~~f 424 (444)
T COG1160 347 KEIYECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKIKYATQVSTNPPTFVLFG--NRPKALHFSYKRYLENRLRKAF 424 (444)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHHhCCCCccCCceEEEEEEecCCCCCCEEEEEe--cchhhCchHHHHHHHHHHHHHc
Confidence 43221 111211 11 0 111 133455544 33 3566788899999999999877
Q ss_pred Ee
Q 016864 339 VW 340 (381)
Q Consensus 339 ~~ 340 (381)
.+
T Consensus 425 ~~ 426 (444)
T COG1160 425 GF 426 (444)
T ss_pred CC
Confidence 43
No 28
>PRK11058 GTPase HflX; Provisional
Probab=99.87 E-value=4.7e-22 Score=195.55 Aligned_cols=218 Identities=21% Similarity=0.250 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHhhhh---h----------h-----hhhHhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCceeEEecCC
Q 016864 4 VMQKIKDIEDEMARTQK---N----------K-----ATAHHLGLLKAKLAKLRRELLTPTSKGGGGGGGEGFDVTKSGD 65 (381)
Q Consensus 4 ~~~~i~~l~~~i~~~~~---~----------~-----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (381)
+|=++++|+..+.|... + + .-+...+.++.++.+++++++........+. ......+.
T Consensus 122 lqvelA~l~y~~prl~~~~~~l~~~~gg~g~~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r----~~r~~~~~ 197 (426)
T PRK11058 122 LQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGR----RARIKADV 197 (426)
T ss_pred HHHHHHhhhhhhhhhhccccchhhhcCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHhhhcCC
Confidence 45567777777776521 0 0 1112344556667777766654431111110 01112244
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE-EeeecCcccccccccCC-CcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA-KIQLLDLPGIIEGAKDG-KGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~-~i~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~ 143 (381)
+.|+|+|+||||||||||+|++....+++.||+|+|+..+.+.+.+. ++.++||||++...+.. ...+...+..+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 79999999999999999999998877899999999999999988764 89999999996542221 11233445567899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++...... ..+..++..++.
T Consensus 278 DlIL~VvDaS~~~~~e~l------------------------------------------~~v~~iL~el~~-------- 307 (426)
T PRK11058 278 TLLLHVVDAADVRVQENI------------------------------------------EAVNTVLEEIDA-------- 307 (426)
T ss_pred CEEEEEEeCCCccHHHHH------------------------------------------HHHHHHHHHhcc--------
Confidence 999999999987421110 011222222211
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH--HHHHH-hcCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE--ELEIL-DKLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~--~l~~l-~~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
..+|+++|+||+|+.... ..... ...+.++.+||++|.|+++|++.+.+.+.
T Consensus 308 ----------------~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 308 ----------------HEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ----------------CCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 026999999999987431 12111 12233588999999999999999988764
No 29
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.86 E-value=3.5e-21 Score=179.72 Aligned_cols=154 Identities=26% Similarity=0.263 Sum_probs=114.0
Q ss_pred EEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCC-CcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG-KGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~d 144 (381)
+|+++|+||||||||+|+|+|... .++++|+||++...|....++.++.++||||+.+..... ..+.......+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 799999999999999999999874 579999999999988887778889999999987642211 011223445678999
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|++.+....+.+.. .+..
T Consensus 82 vvl~VvD~~~~~~~~~~i~~--------------------------------------------~l~~------------ 105 (270)
T TIGR00436 82 LILFVVDSDQWNGDGEFVLT--------------------------------------------KLQN------------ 105 (270)
T ss_pred EEEEEEECCCCCchHHHHHH--------------------------------------------HHHh------------
Confidence 99999999875322111111 1111
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----HHH---hcCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----EIL---DKLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~l---~~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
..+|+++|+||+|+...+.+ ..+ ..+.+++++||.++.|+++|.+.+.+.++
T Consensus 106 ---------------~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 106 ---------------LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred ---------------cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 12699999999999754432 122 23457899999999999999999999875
No 30
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.85 E-value=4.5e-21 Score=165.91 Aligned_cols=160 Identities=34% Similarity=0.458 Sum_probs=113.5
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE-EeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA-KIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~-~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.|+++|++|||||||+|+|++....++++|++|+++..|.+.+++. .+.++||||+.+...........++..+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999998777788999999999999998886 999999999865433322334455555678999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|++++....+.+..+. ..+....
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~-----------------------------------------~~l~~~~----------- 109 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIR-----------------------------------------NELELYN----------- 109 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHH-----------------------------------------HHHHHhC-----------
Confidence 999999987621111111110 0011100
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcCCHHH----HHHH-hc--CCCeeeecccccccHHHHHHHHHHH
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQITLEE----LEIL-DK--LPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~----l~~l-~~--~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
.....+|.++|+||+|+..... +..+ .. ..+++++||+++.|++++++.+.+.
T Consensus 110 -----------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 110 -----------PELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred -----------ccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 0001269999999999875332 2222 22 3568999999999999999998764
No 31
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.84 E-value=6.9e-21 Score=170.30 Aligned_cols=192 Identities=32% Similarity=0.358 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEE
Q 016864 28 LGLLKAKLAKLRRELLTPTSKGGGGGGGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVI 107 (381)
Q Consensus 28 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i 107 (381)
..++++++++++++++.....+..++. ....++..+|+++|++|||||||+|+|++....+.+.+++|.++..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~ 83 (204)
T cd01878 8 RRLIRERIAKLRRELEKVKKQRELQRR----RRKRSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRL 83 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH----hhhhcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEE
Confidence 345556666666665443311111100 1113355899999999999999999999987667788899999999888
Q ss_pred EEcCE-EeeecCcccccccccCCC-cchhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceee
Q 016864 108 TYRGA-KIQLLDLPGIIEGAKDGK-GRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKK 185 (381)
Q Consensus 108 ~~~g~-~i~l~DtpG~~~~~~~~~-~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~ 185 (381)
.+++. ++.++||||+.+...... ......+..+..+|++++|+|++++..... +
T Consensus 84 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~-~----------------------- 139 (204)
T cd01878 84 RLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQ-I----------------------- 139 (204)
T ss_pred EecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhH-H-----------------------
Confidence 88765 999999999865422111 111222234568999999999987632111 0
Q ss_pred ccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHH--h
Q 016864 186 DKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEIL--D 263 (381)
Q Consensus 186 ~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l--~ 263 (381)
.....++..++. ..+|+++|+||+|+......... .
T Consensus 140 ------------------~~~~~~l~~~~~------------------------~~~~viiV~NK~Dl~~~~~~~~~~~~ 177 (204)
T cd01878 140 ------------------ETVEKVLKELGA------------------------EDIPMILVLNKIDLLDDEELEERLEA 177 (204)
T ss_pred ------------------HHHHHHHHHcCc------------------------CCCCEEEEEEccccCChHHHHHHhhc
Confidence 011122222111 12699999999999765443211 2
Q ss_pred cCCCeeeecccccccHHHHHHHHHHH
Q 016864 264 KLPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 264 ~~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
...+++.+||+++.|++++.+.+...
T Consensus 178 ~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 178 GRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 34568999999999999999988764
No 32
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.83 E-value=2.7e-20 Score=161.79 Aligned_cols=162 Identities=41% Similarity=0.591 Sum_probs=112.8
Q ss_pred EEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc-CEEeeecCcccccccccCCCcchhhhhcccCCcchhHH
Q 016864 70 LVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR-GAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILI 148 (381)
Q Consensus 70 lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~-g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~ 148 (381)
++|++|||||||+|+|++....++++++||+++..+.+.++ +.++.++||||+.+..........++...+..+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999987777899999999999999998 99999999999876543333333455556788999999
Q ss_pred HHhcCCCh-----HHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 149 VLDAIKPI-----THKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 149 vvd~~~~~-----~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|+|+.++. ...+...... ..+....
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~------ 110 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILN--------------------------------------------AELKLYD------ 110 (176)
T ss_pred EEeccCCccccccCHHHHHHHHH--------------------------------------------HHHHHhh------
Confidence 99998762 1111111110 0000000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHH-------hcCCCeeeecccccccHHHHHHHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEIL-------DKLPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l-------~~~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
...+... ...+|+++|+||+|+......... .....++++||+++.|++++++.+...
T Consensus 111 ----~~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 111 ----LETILGL----LTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ----hhhHHHH----HhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 0000000 012799999999999865443221 223568999999999999999988764
No 33
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=4.6e-20 Score=169.30 Aligned_cols=159 Identities=30% Similarity=0.396 Sum_probs=113.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCC-CcchhhhhcccC-C
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG-KGRGRQVISTAR-T 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~-~~~~~~~~~~~~-~ 142 (381)
.++|.+.|+||+|||||+++||+..+.+++|||||.....|.+.+++..++++||||+.+-.-.. ...-.|...+++ -
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl 247 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHL 247 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHh
Confidence 38999999999999999999999999999999999999999999999999999999998643221 112233333443 3
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
.+++++++|.+... +.+.+....++.+.+
T Consensus 248 ~~~IlF~~D~Se~c-------------------------------------------gy~lE~Q~~L~~eIk-------- 276 (346)
T COG1084 248 AGVILFLFDPSETC-------------------------------------------GYSLEEQISLLEEIK-------- 276 (346)
T ss_pred cCeEEEEEcCcccc-------------------------------------------CCCHHHHHHHHHHHH--------
Confidence 56688888877531 112222222222211
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHHh------cCCCeeeecccccccHHHHHHHHHHH
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEILD------KLPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l~------~~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
..+..|+++|+||+|+...+.++.+. .....+-+++..+.+++.+.+.+...
T Consensus 277 ---------------~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 277 ---------------ELFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred ---------------HhcCCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 11226999999999998776654432 12335678899999999888777664
No 34
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.81 E-value=3.4e-20 Score=184.34 Aligned_cols=183 Identities=30% Similarity=0.314 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEE
Q 016864 29 GLLKAKLAKLRRELLTPTSKGGGGGGGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVI 107 (381)
Q Consensus 29 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i 107 (381)
..+++++++++.+++........+ ...+++ .+|+++|+||||||||+|+|++... .++++|+||+|.....+
T Consensus 186 ~~i~~~i~~l~~~l~~l~~~~~~~------~~~~~~-~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i 258 (449)
T PRK05291 186 EKILEKLEELIAELEALLASARQG------EILREG-LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHI 258 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHhhcC-CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEE
Confidence 344555566555554432111111 122334 8999999999999999999999764 57899999999999999
Q ss_pred EEcCEEeeecCcccccccccCCCcc-hhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeec
Q 016864 108 TYRGAKIQLLDLPGIIEGAKDGKGR-GRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKD 186 (381)
Q Consensus 108 ~~~g~~i~l~DtpG~~~~~~~~~~~-~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~ 186 (381)
.++|.++.++||||+.+....-... ....+..+..+|++++|+|++++....+.
T Consensus 259 ~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~------------------------- 313 (449)
T PRK05291 259 NLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDD------------------------- 313 (449)
T ss_pred EECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHH-------------------------
Confidence 9999999999999986422100000 12234467899999999999876421100
Q ss_pred cccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHHhcCC
Q 016864 187 KGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEILDKLP 266 (381)
Q Consensus 187 r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l~~~~ 266 (381)
.++.. ...+|+++|+||+|+....... .....
T Consensus 314 ---------------------~~l~~--------------------------~~~~piiiV~NK~DL~~~~~~~-~~~~~ 345 (449)
T PRK05291 314 ---------------------EILEE--------------------------LKDKPVIVVLNKADLTGEIDLE-EENGK 345 (449)
T ss_pred ---------------------HHHHh--------------------------cCCCCcEEEEEhhhccccchhh-hccCC
Confidence 00100 0126999999999997544332 12235
Q ss_pred CeeeecccccccHHHHHHHHHHHcC
Q 016864 267 HYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 267 ~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+++++||+++.|+++|.+.+.+.+.
T Consensus 346 ~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 346 PVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 6899999999999999999988765
No 35
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=4.9e-19 Score=176.94 Aligned_cols=154 Identities=30% Similarity=0.380 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCC--cchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK--GRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~--~~~~~~~~~~~~~ 143 (381)
.+||++|.||+|||||||+|||....++|+||+|++-..|.+.+.|..++++|+||.++-.+... .....++ .-...
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l-l~~~~ 82 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFL-LEGKP 82 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHH-hcCCC
Confidence 57999999999999999999999999999999999999999999999999999999987543321 1223332 23578
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|+++.|+|+++.++..-...+.++
T Consensus 83 D~ivnVvDAtnLeRnLyltlQLlE-------------------------------------------------------- 106 (653)
T COG0370 83 DLIVNVVDATNLERNLYLTLQLLE-------------------------------------------------------- 106 (653)
T ss_pred CEEEEEcccchHHHHHHHHHHHHH--------------------------------------------------------
Confidence 999999999876544332222211
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH----HHHHHhc--CCCeeeecccccccHHHHHHHHHHHcCC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE----ELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLNL 292 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~----~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~~ 292 (381)
..+|+|+++|.+|..... +.+.+.+ ..+++++||..+.|++++++++.+..+.
T Consensus 107 ----------------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 107 ----------------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred ----------------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccc
Confidence 126999999999987432 1233322 3579999999999999999999886653
No 36
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.79 E-value=1e-18 Score=150.99 Aligned_cols=159 Identities=29% Similarity=0.405 Sum_probs=107.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcc-hhhhhcc-cCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGR-GRQVIST-ARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~-~~~~~~~-~~~~ 143 (381)
++|+++|++|||||||+|+|++....+++++++|.++..+.+.+++.++.++||||+.+........ ..+.... ...+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 4799999999999999999999877778899999999999988888999999999985422111100 0111111 1235
Q ss_pred chhHHHHhcCCChH-HHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 144 NCILIVLDAIKPIT-HKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 144 d~il~vvd~~~~~~-~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
|++++|+|+++... ..+. ...++..+
T Consensus 81 d~~l~v~d~~~~~~~~~~~--------------------------------------------~~~~~~~l--------- 107 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEE--------------------------------------------QLSLFEEI--------- 107 (168)
T ss_pred CcEEEEEeCCcccccchHH--------------------------------------------HHHHHHHH---------
Confidence 88899999876421 1011 11111111
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH---HHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE---ILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~---~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.......|+|+|+||+|+.....+. .+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 108 -------------~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 108 -------------KPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred -------------HhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 0000126999999999997654332 2222 34688999999999999999987754
No 37
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.6e-19 Score=171.61 Aligned_cols=212 Identities=24% Similarity=0.260 Sum_probs=134.6
Q ss_pred ecCCcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCc--chhhhhc
Q 016864 62 KSGDSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG--RGRQVIS 138 (381)
Q Consensus 62 ~~~~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~--~~~~~~~ 138 (381)
..| ..|+|+|+||+|||||+|+|+..+. .+++.||||+|.....+.++|.++.++||+|+++....+.. -..+...
T Consensus 266 q~g-l~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 266 QSG-LQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hcC-CeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 335 8999999999999999999999875 57999999999999999999999999999999983332221 1234444
Q ss_pred ccCCcchhHHHHhcCCC--hHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhccc
Q 016864 139 TARTCNCILIVLDAIKP--ITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIH 216 (381)
Q Consensus 139 ~~~~~d~il~vvd~~~~--~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~ 216 (381)
.+..+|++++|+|+... ..+ ..+.+.++.-+. ++.
T Consensus 345 ~~~~advi~~vvda~~~~t~sd-~~i~~~l~~~~~------------------------------------------g~~ 381 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESD-LKIARILETEGV------------------------------------------GLV 381 (531)
T ss_pred HHhhcCEEEEEecccccccccc-hHHHHHHHHhcc------------------------------------------ceE
Confidence 67899999999999432 111 111222221111 000
Q ss_pred CCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCH-HHHH-----HHh-----cCCCeeeecccccccHHHHHHH
Q 016864 217 NADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-EELE-----ILD-----KLPHYCPVSAHLEWNLDGLLEK 285 (381)
Q Consensus 217 ~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-~~l~-----~l~-----~~~~~v~vSa~~~~gl~~L~~~ 285 (381)
. .+.. . ...|+|++.||+|+.++ .++. ... .++.++.+||.+++|+++|.+.
T Consensus 382 ~-~~~~---------------~-~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~a 444 (531)
T KOG1191|consen 382 V-IVNK---------------M-EKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTA 444 (531)
T ss_pred E-Eecc---------------c-cccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHH
Confidence 0 0000 0 01599999999999865 2221 111 2444566999999999999999
Q ss_pred HHHHcCCcEEEeCCCCCCCCCCCcEEec-CCCCCHHHHH--HHHHHHHHhcccEEEEec
Q 016864 286 IWEYLNLTRIYTKPKGMNPDYEDPVILS-SKKRTVEDFC--ERIHKDMVKQFKYALVWG 341 (381)
Q Consensus 286 i~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~i~~~~~~~f~~a~~~~ 341 (381)
+.+.+....+-+. ..+|.+.. +....++.++ ...|..+.+.++.-.+++
T Consensus 445 ll~~~~~~~~~~~-------s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~~D~~la 496 (531)
T KOG1191|consen 445 LLNIVERLVVSPH-------SAPPTLSQKRIKELLRTCAAPELERRFLAKQLKEDIDLA 496 (531)
T ss_pred HHHHHHHhhcCCC-------CCchhhcchhHHHHHHhhhhhhHHHHHHhhhcccchhhc
Confidence 9887764332111 11123332 2112223233 356666777666555443
No 38
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=6.7e-19 Score=169.12 Aligned_cols=157 Identities=30% Similarity=0.418 Sum_probs=112.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccC-CCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD-GKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.||||||||+|+|+|... .+++.++||++...|.+.+++.++.++||||+.+.... +..+.......+..+
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~a 132 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSA 132 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhC
Confidence 3999999999999999999999764 45789999999999999999999999999998653221 111223333457899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.....+... .++..
T Consensus 133 Dvil~VvD~~~s~~~~~~----------------------------------------------~il~~----------- 155 (339)
T PRK15494 133 DLVLLIIDSLKSFDDITH----------------------------------------------NILDK----------- 155 (339)
T ss_pred CEEEEEEECCCCCCHHHH----------------------------------------------HHHHH-----------
Confidence 999999998764321110 01111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH--HHHHH-Hh---cCCCeeeecccccccHHHHHHHHHHHcCC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL--EELEI-LD---KLPHYCPVSAHLEWNLDGLLEKIWEYLNL 292 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~--~~l~~-l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l~~ 292 (381)
+... ..|.|+|+||+|+... .++.. +. .+..++++||+++.|+++|++.+.+.++.
T Consensus 156 -----------l~~~--~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 156 -----------LRSL--NIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred -----------HHhc--CCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 1110 1477899999998643 22222 22 13468999999999999999999998863
No 39
>PRK00089 era GTPase Era; Reviewed
Probab=99.76 E-value=2.1e-18 Score=162.88 Aligned_cols=154 Identities=36% Similarity=0.485 Sum_probs=112.5
Q ss_pred EEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccC-CCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD-GKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~d 144 (381)
.|+++|+||||||||+|+|+|... .+++.|.||++...|.+..++.++.++||||+.+.... +..........+..+|
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D 86 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVD 86 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999874 56889999999988887777789999999998654311 0011223334568899
Q ss_pred hhHHHHhcCCChHH-HHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 145 CILIVLDAIKPITH-KRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 145 ~il~vvd~~~~~~~-~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
++++|+|+.++... ...+ +..
T Consensus 87 ~il~vvd~~~~~~~~~~~i-----------------------------------------------~~~----------- 108 (292)
T PRK00089 87 LVLFVVDADEKIGPGDEFI-----------------------------------------------LEK----------- 108 (292)
T ss_pred EEEEEEeCCCCCChhHHHH-----------------------------------------------HHH-----------
Confidence 99999999874211 1111 111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcC-CHHHH----HHHh---cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQI-TLEEL----EILD---KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~-~~~~l----~~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+.. ..+|+++|+||+|+. ..+.+ +.+. .+..++++||.++.|+++|++.+.+.++
T Consensus 109 -----------l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 109 -----------LKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred -----------Hhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 111 026999999999998 43432 2232 3567899999999999999999998775
No 40
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.76 E-value=4.6e-19 Score=161.58 Aligned_cols=162 Identities=22% Similarity=0.176 Sum_probs=122.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEE-cCEEeeecCcccccccccCCCc-chhhhhcccC
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITY-RGAKIQLLDLPGIIEGAKDGKG-RGRQVISTAR 141 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~-~g~~i~l~DtpG~~~~~~~~~~-~~~~~~~~~~ 141 (381)
..+.|++||++|||||||+|+||+......+..|.|.||+...... +|..+.+.||.||+...+.+.. .+...++.+.
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVa 256 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVA 256 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHh
Confidence 3479999999999999999999977666678899999998776665 4789999999999998876643 4567777889
Q ss_pred CcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccc
Q 016864 142 TCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADIT 221 (381)
Q Consensus 142 ~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 221 (381)
.+|+++||+|.++|..+.+. +.+..+|.++++.....+
T Consensus 257 eadlllHvvDiShP~ae~q~------------------------------------------e~Vl~vL~~igv~~~pkl 294 (410)
T KOG0410|consen 257 EADLLLHVVDISHPNAEEQR------------------------------------------ETVLHVLNQIGVPSEPKL 294 (410)
T ss_pred hcceEEEEeecCCccHHHHH------------------------------------------HHHHHHHHhcCCCcHHHH
Confidence 99999999999999543221 456666777666432211
Q ss_pred cccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHHhcCCCeeeecccccccHHHHHHHHHHHc
Q 016864 222 LRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 222 ~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l~~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.-+|-|-||+|.....- + .+....+++||.+|.|++++++.+-...
T Consensus 295 --------------------~~mieVdnkiD~e~~~~-e--~E~n~~v~isaltgdgl~el~~a~~~kv 340 (410)
T KOG0410|consen 295 --------------------QNMIEVDNKIDYEEDEV-E--EEKNLDVGISALTGDGLEELLKAEETKV 340 (410)
T ss_pred --------------------hHHHhhccccccccccC-c--cccCCccccccccCccHHHHHHHHHHHh
Confidence 13445569999764321 0 1223479999999999999999886644
No 41
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.75 E-value=2.5e-18 Score=170.19 Aligned_cols=92 Identities=32% Similarity=0.397 Sum_probs=73.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcc-hhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGR-GRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~-~~~~~~~~~~ 142 (381)
+.+|+++|+||||||||+|+|++... .++++|+||+|...+.+.++|.++.++||||+.+........ .......++.
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~ 282 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQ 282 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhh
Confidence 38999999999999999999999764 678999999999999999999999999999986532110000 1123345689
Q ss_pred cchhHHHHhcCCCh
Q 016864 143 CNCILIVLDAIKPI 156 (381)
Q Consensus 143 ~d~il~vvd~~~~~ 156 (381)
+|++++|+|++++.
T Consensus 283 aD~il~V~D~s~~~ 296 (442)
T TIGR00450 283 ADLVIYVLDASQPL 296 (442)
T ss_pred CCEEEEEEECCCCC
Confidence 99999999998764
No 42
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.75 E-value=7.8e-18 Score=144.37 Aligned_cols=145 Identities=22% Similarity=0.227 Sum_probs=100.6
Q ss_pred EEEEEcCCCCchHHHHHHHhcccc---cccccccceeeeecEEEEEc-CEEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFS---EVASYEFTTLTCIPGVITYR-GAKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~---~~~~~~~tT~~~~~g~i~~~-g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.|+++|.+|||||||+|+|+|... +....+++|++.....+.+. +..+.++||||..... ......+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~-------~~~~~~~~~ 74 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFI-------KNMLAGAGG 74 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHH-------HHHHhhhhc
Confidence 689999999999999999998532 11234688988888888886 7899999999975431 233445678
Q ss_pred cchhHHHHhcCCChH-HHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccc
Q 016864 143 CNCILIVLDAIKPIT-HKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADIT 221 (381)
Q Consensus 143 ~d~il~vvd~~~~~~-~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 221 (381)
+|++++|+|+.++.. +.... + ..+..
T Consensus 75 ad~ii~V~d~~~~~~~~~~~~-------------------------------------------~-~~~~~--------- 101 (164)
T cd04171 75 IDLVLLVVAADEGIMPQTREH-------------------------------------------L-EILEL--------- 101 (164)
T ss_pred CCEEEEEEECCCCccHhHHHH-------------------------------------------H-HHHHH---------
Confidence 999999999876321 10000 0 00100
Q ss_pred cccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH-------HHH-Hhc----CCCeeeecccccccHHHHHHHHHH
Q 016864 222 LRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-------LEI-LDK----LPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 222 ~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-------l~~-l~~----~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
.. .+|+++|+||+|+..... +.. +.. ..+++++||.++.|++++.+.+..
T Consensus 102 ----------------~~-~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 102 ----------------LG-IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred ----------------hC-CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 00 149999999999975421 111 221 347899999999999999988754
No 43
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=3.8e-18 Score=169.73 Aligned_cols=156 Identities=29% Similarity=0.307 Sum_probs=114.5
Q ss_pred EEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccC-CCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD-GKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~d 144 (381)
+|++||.||||||||+|+|++... .++++|++|++...+.+.++|..+.++||||+...... ......+....+..+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 489999999999999999999764 56899999999999999999999999999998532110 0112234455678999
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|+..+...... .+..+|.+
T Consensus 81 ~vl~vvD~~~~~~~~d~-------------------------------------------~i~~~l~~------------ 105 (429)
T TIGR03594 81 VILFVVDGREGLTPEDE-------------------------------------------EIAKWLRK------------ 105 (429)
T ss_pred EEEEEEeCCCCCCHHHH-------------------------------------------HHHHHHHH------------
Confidence 99999999875321110 11122221
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCHHH-HHHHh--cCCCeeeecccccccHHHHHHHHHHHcCC
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-LEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLNL 292 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~~ 292 (381)
..+|+++|+||+|+...+. ..... .+.+++++||+++.|++++++.+.+.++.
T Consensus 106 ---------------~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 106 ---------------SGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred ---------------hCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 1269999999999875432 22222 34578999999999999999999887753
No 44
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.74 E-value=5e-18 Score=125.09 Aligned_cols=75 Identities=64% Similarity=1.113 Sum_probs=70.8
Q ss_pred CcEEEeCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHhcccEEEEecCCCccCCeeeCCCcccccCCCCCCCC
Q 016864 292 LTRIYTKPKGMNPDYEDPVILSSKKRTVEDFCERIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELEDEXXXXXXX 367 (381)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~f~~a~~~~~~~~~~~~rvg~~~~l~~~d~~~i~~ 367 (381)
++++||+++|..+++++|+++++ ++|+.|+++.+|+++.++|++|.+||.++++.|||||.+|+|+|||+|+|++
T Consensus 1 lirvytk~~g~~~d~~~~liL~~-GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRR-GSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECC-CCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 47899999998899999999976 6999999999999999999999999999999999999999999999999975
No 45
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=1.2e-17 Score=167.64 Aligned_cols=156 Identities=24% Similarity=0.315 Sum_probs=111.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCC--Ccchh--hhhcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG--KGRGR--QVIST 139 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~--~~~~~--~~~~~ 139 (381)
..+|+++|+||||||||+|+|++... .++++|+||+|+....+.++|.++.++||||+....... ..... .....
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~ 290 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAA 290 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHH
Confidence 47999999999999999999999864 578899999999999999999999999999986543221 11111 11234
Q ss_pred cCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCc
Q 016864 140 ARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNAD 219 (381)
Q Consensus 140 ~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~ 219 (381)
++.+|++++|+|++++...... .++..
T Consensus 291 i~~ad~vilV~Da~~~~s~~~~----------------------------------------------~~~~~------- 317 (472)
T PRK03003 291 IEAAEVAVVLIDASEPISEQDQ----------------------------------------------RVLSM------- 317 (472)
T ss_pred HhcCCEEEEEEeCCCCCCHHHH----------------------------------------------HHHHH-------
Confidence 6899999999999876322110 00000
Q ss_pred cccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH-------HH-HHh--cCCCeeeecccccccHHHHHHHHHHH
Q 016864 220 ITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-------LE-ILD--KLPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 220 ~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-------l~-~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
+.. ..+|+|+|+||+|+...+. +. .+. .+.+++.+||++|.|++++++.+.+.
T Consensus 318 ---------------~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~ 380 (472)
T PRK03003 318 ---------------VIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETA 380 (472)
T ss_pred ---------------HHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 000 1269999999999975321 11 111 24678999999999999998887654
Q ss_pred c
Q 016864 290 L 290 (381)
Q Consensus 290 l 290 (381)
+
T Consensus 381 ~ 381 (472)
T PRK03003 381 L 381 (472)
T ss_pred H
Confidence 4
No 46
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.74 E-value=6.2e-18 Score=143.70 Aligned_cols=153 Identities=31% Similarity=0.310 Sum_probs=112.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCC-CcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG-KGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++... .+++.+++|.+...+.+.+.+.++.++||||+.+....- ..........+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 6899999999999999999998764 467899999999988898889999999999986543210 00112333456789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+..+...... .++..
T Consensus 82 ~~~v~v~d~~~~~~~~~~----------------------------------------------~~~~~----------- 104 (157)
T cd04164 82 DLVLFVIDASRGLDEEDL----------------------------------------------EILEL----------- 104 (157)
T ss_pred CEEEEEEECCCCCCHHHH----------------------------------------------HHHHh-----------
Confidence 999999999865321110 00000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHHhcCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l~~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
...+|+++|+||+|+.............+++.+||.++.|+++|.+.+.+.+
T Consensus 105 ---------------~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 105 ---------------PADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ---------------hcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 0126999999999998655442222345789999999999999999987754
No 47
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=4.5e-18 Score=144.66 Aligned_cols=151 Identities=29% Similarity=0.350 Sum_probs=107.7
Q ss_pred EEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccC-CCcchhhhhcccCCcchh
Q 016864 69 GLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD-GKGRGRQVISTARTCNCI 146 (381)
Q Consensus 69 ~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~d~i 146 (381)
+++|.+|||||||+|.|++... .+++.+++|.+.....+.+++..+.++||||+.+.... ...........++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 5899999999999999998753 56788999999998999999999999999998764320 000112333456789999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCC
Q 016864 147 LIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDA 226 (381)
Q Consensus 147 l~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~ 226 (381)
++|+|+.++...... .+..++..
T Consensus 81 i~v~d~~~~~~~~~~-------------------------------------------~~~~~~~~-------------- 103 (157)
T cd01894 81 LFVVDGREGLTPADE-------------------------------------------EIAKYLRK-------------- 103 (157)
T ss_pred EEEEeccccCCccHH-------------------------------------------HHHHHHHh--------------
Confidence 999998764321110 01111111
Q ss_pred ChhHHHHHHhcccccccEEEEEecCCcCCHHHH-HHHh--cCCCeeeecccccccHHHHHHHHHHH
Q 016864 227 TADDLIDVIEGSRIYMPCIYVINKIDQITLEEL-EILD--KLPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 227 t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l-~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
...|+++|+||+|+...... ..+. ....++++||.++.|++++++.+.+.
T Consensus 104 -------------~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 104 -------------SKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred -------------cCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 12699999999999865443 2222 23468999999999999999998764
No 48
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=7e-18 Score=169.31 Aligned_cols=157 Identities=28% Similarity=0.302 Sum_probs=113.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCC--cchhhhhccc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK--GRGRQVISTA 140 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~--~~~~~~~~~~ 140 (381)
..++|+|||.||||||||+|+|++... .+++.|++|++...+.+.++|..+.++||||+..... +. ....+....+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~ 115 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK-GLQASVAEQAEVAM 115 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch-hHHHHHHHHHHHHH
Confidence 347999999999999999999999763 5688999999999999999999999999999753211 11 1122334457
Q ss_pred CCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcc
Q 016864 141 RTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADI 220 (381)
Q Consensus 141 ~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 220 (381)
..+|++++|+|++++..... ..+...+..
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-------------------------------------------~~i~~~l~~-------- 144 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-------------------------------------------EAVARVLRR-------- 144 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-------------------------------------------HHHHHHHHH--------
Confidence 89999999999987632111 011111111
Q ss_pred ccccCCChhHHHHHHhcccccccEEEEEecCCcCCHH-HHHHH--hcCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 221 TLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-ELEIL--DKLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 221 ~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-~l~~l--~~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
..+|+|+|+||+|+...+ +.... ..+...+++||.+|.|+++|++.+.+.+.
T Consensus 145 -------------------~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 145 -------------------SGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALP 199 (472)
T ss_pred -------------------cCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcc
Confidence 126999999999986432 12211 23445689999999999999999988764
No 49
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=1.2e-17 Score=142.31 Aligned_cols=148 Identities=28% Similarity=0.354 Sum_probs=106.4
Q ss_pred EEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCC--cchhhhhcccCCcchhH
Q 016864 70 LVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK--GRGRQVISTARTCNCIL 147 (381)
Q Consensus 70 lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~--~~~~~~~~~~~~~d~il 147 (381)
|+|++|||||||+|+++|....++++|++|++...+.+.+++..+.++||||+........ .....++.. ..+|+++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEE
Confidence 5899999999999999998777788999999999999999999999999999865432111 111222222 5899999
Q ss_pred HHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCC
Q 016864 148 IVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDAT 227 (381)
Q Consensus 148 ~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t 227 (381)
+|+|+..+......+. . +..
T Consensus 80 ~v~d~~~~~~~~~~~~--------------------------------------------~-~~~--------------- 99 (158)
T cd01879 80 NVVDATNLERNLYLTL--------------------------------------------Q-LLE--------------- 99 (158)
T ss_pred EEeeCCcchhHHHHHH--------------------------------------------H-HHH---------------
Confidence 9999876532111100 0 000
Q ss_pred hhHHHHHHhcccccccEEEEEecCCcCCHH----HHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 228 ADDLIDVIEGSRIYMPCIYVINKIDQITLE----ELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 228 ~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~----~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
..+|.++|+||+|+.... +.+.+.. ..+++++||+++.|++++.+.+....
T Consensus 100 ------------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 100 ------------LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ------------cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 126999999999997432 2222221 24689999999999999999887653
No 50
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=1.9e-17 Score=164.96 Aligned_cols=154 Identities=29% Similarity=0.348 Sum_probs=112.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCC--cc--hhhhhc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK--GR--GRQVIS 138 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~--~~--~~~~~~ 138 (381)
...+|+++|+||+|||||+|+|+|... .+++.|+||+++....+.+++..+.++||||+........ .. ....+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 348999999999999999999999874 5688999999999888888999999999999865443211 10 123344
Q ss_pred ccCCcchhHHHHhcCCChHHHHH-HHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccC
Q 016864 139 TARTCNCILIVLDAIKPITHKRL-IEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHN 217 (381)
Q Consensus 139 ~~~~~d~il~vvd~~~~~~~~~~-i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~ 217 (381)
.++.+|++++|+|+..+....+. +. ..+..
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~i~--------------------------------------------~~~~~----- 282 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLRIA--------------------------------------------GLALE----- 282 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHHHH--------------------------------------------HHHHH-----
Confidence 67889999999999876332111 11 00000
Q ss_pred CccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHH----Hh------cCCCeeeecccccccHHHHHHHHH
Q 016864 218 ADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEI----LD------KLPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 218 ~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~----l~------~~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
..+|+|+|+||+|+...+..+. +. .+.+++++||+++.|++++++.+.
T Consensus 283 ----------------------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~ 340 (435)
T PRK00093 283 ----------------------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAID 340 (435)
T ss_pred ----------------------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHH
Confidence 1269999999999985433221 11 246799999999999999988765
Q ss_pred H
Q 016864 288 E 288 (381)
Q Consensus 288 ~ 288 (381)
+
T Consensus 341 ~ 341 (435)
T PRK00093 341 E 341 (435)
T ss_pred H
Confidence 4
No 51
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.73 E-value=1.5e-17 Score=174.21 Aligned_cols=153 Identities=22% Similarity=0.289 Sum_probs=112.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCC--cchh---hhhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK--GRGR---QVISTA 140 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~--~~~~---~~~~~~ 140 (381)
.+|+++|.||||||||+|+|+|....++++|++|++...|.+.+++.++.++||||..+...... .... ...-..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~ 83 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhc
Confidence 58999999999999999999999888999999999999999999999999999999976432110 0001 111123
Q ss_pred CCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcc
Q 016864 141 RTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADI 220 (381)
Q Consensus 141 ~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 220 (381)
..+|++++|+|+++......... + +.+
T Consensus 84 ~~aD~vI~VvDat~ler~l~l~~--------------------------------------------q-l~e-------- 110 (772)
T PRK09554 84 GDADLLINVVDASNLERNLYLTL--------------------------------------------Q-LLE-------- 110 (772)
T ss_pred cCCCEEEEEecCCcchhhHHHHH--------------------------------------------H-HHH--------
Confidence 57899999999987543211110 0 001
Q ss_pred ccccCCChhHHHHHHhcccccccEEEEEecCCcCCHH----HHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 221 TLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE----ELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 221 ~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~----~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
..+|+++++||+|+.... +.+.+.+ ..+++++||.++.|++++.+.+.+..
T Consensus 111 -------------------~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 111 -------------------LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred -------------------cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 126999999999986331 2333322 24789999999999999999998764
No 52
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.72 E-value=1e-17 Score=151.78 Aligned_cols=90 Identities=30% Similarity=0.461 Sum_probs=74.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc-ccccccccceeeeecEEEEEcCEEeeecCcccccccccCCC-----cchhhhhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF-SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK-----GRGRQVIST 139 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~-~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~-----~~~~~~~~~ 139 (381)
..||+||.||||||||.|.+.|.. .+++..+.||+....|.++-+..++.|+||||++....... .........
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a 152 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDA 152 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHH
Confidence 589999999999999999999987 47899999999999999999999999999999987643211 111223345
Q ss_pred cCCcchhHHHHhcCCC
Q 016864 140 ARTCNCILIVLDAIKP 155 (381)
Q Consensus 140 ~~~~d~il~vvd~~~~ 155 (381)
+..||.++.|+|++++
T Consensus 153 ~q~AD~vvVv~Das~t 168 (379)
T KOG1423|consen 153 AQNADCVVVVVDASAT 168 (379)
T ss_pred HhhCCEEEEEEeccCC
Confidence 6789999999999864
No 53
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=3.5e-17 Score=162.83 Aligned_cols=156 Identities=29% Similarity=0.330 Sum_probs=112.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCC--Ccc--hhhhhc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG--KGR--GRQVIS 138 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~--~~~--~~~~~~ 138 (381)
+..+|+++|.+|+|||||+|+|+|... .+++.|+||+++....+.++|..+.++||||+....... ... ..+.+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 346899999999999999999999764 568899999999999999999999999999987644321 110 122334
Q ss_pred ccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCC
Q 016864 139 TARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNA 218 (381)
Q Consensus 139 ~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~ 218 (381)
.++.+|++++|+|+.++....+. .++.
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~----------------------------------------------~~~~------- 277 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL----------------------------------------------RIAG------- 277 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH----------------------------------------------HHHH-------
Confidence 57899999999999876432111 0000
Q ss_pred ccccccCCChhHHHHHHhcccccccEEEEEecCCcC-CHHHHH----HHh------cCCCeeeecccccccHHHHHHHHH
Q 016864 219 DITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQI-TLEELE----ILD------KLPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 219 ~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~-~~~~l~----~l~------~~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
.+.. ..+|+|+|+||+|+. ..+..+ .+. .+.+++++||+++.|++++++.+.
T Consensus 278 ---------------~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~ 340 (429)
T TIGR03594 278 ---------------LILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAID 340 (429)
T ss_pred ---------------HHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHH
Confidence 0000 126999999999997 333221 111 245799999999999999988775
Q ss_pred HH
Q 016864 288 EY 289 (381)
Q Consensus 288 ~~ 289 (381)
+.
T Consensus 341 ~~ 342 (429)
T TIGR03594 341 EV 342 (429)
T ss_pred HH
Confidence 54
No 54
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=1.9e-17 Score=164.97 Aligned_cols=155 Identities=31% Similarity=0.330 Sum_probs=112.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCC-CcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG-KGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~ 143 (381)
.+|+|+|.||||||||+|+|+|... .++++|++|++...+.+.++|..+.++||||+......- .....+....+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999764 568899999999999999999999999999987621100 00122334466899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+..+....+. .+..+|...
T Consensus 82 d~il~vvd~~~~~~~~~~-------------------------------------------~~~~~l~~~---------- 108 (435)
T PRK00093 82 DVILFVVDGRAGLTPADE-------------------------------------------EIAKILRKS---------- 108 (435)
T ss_pred CEEEEEEECCCCCCHHHH-------------------------------------------HHHHHHHHc----------
Confidence 999999999875321110 111222211
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH-HHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-ELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.+|+++|+||+|....+ ...... .+..++++||.++.|++++++.+....
T Consensus 109 -----------------~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 109 -----------------NKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred -----------------CCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 26999999999976422 222222 234579999999999999999998744
No 55
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=4.5e-17 Score=170.90 Aligned_cols=157 Identities=27% Similarity=0.298 Sum_probs=112.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCC--cch--hhhhc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK--GRG--RQVIS 138 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~--~~~--~~~~~ 138 (381)
+..+|+++|.||||||||+|+|++... .++++|+||+++....+.++|.++.++||||+.+...... ... .....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 347999999999999999999999875 5689999999999999999999999999999875432211 111 11233
Q ss_pred ccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCC
Q 016864 139 TARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNA 218 (381)
Q Consensus 139 ~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~ 218 (381)
.++.+|++++|+|++.+...... .++..
T Consensus 529 ~i~~advvilViDat~~~s~~~~----------------------------------------------~i~~~------ 556 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDL----------------------------------------------KVMSM------ 556 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHH----------------------------------------------HHHHH------
Confidence 46889999999999876322110 00000
Q ss_pred ccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH---HHH-Hh------cCCCeeeecccccccHHHHHHHHHH
Q 016864 219 DITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE---LEI-LD------KLPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 219 ~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~---l~~-l~------~~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
+.. ..+|+|+|+||+|+...+. ++. +. .+.+++++||+++.|+++|++.+.+
T Consensus 557 ----------------~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~ 618 (712)
T PRK09518 557 ----------------AVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQE 618 (712)
T ss_pred ----------------HHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 000 1269999999999975432 221 11 2456799999999999999887765
Q ss_pred Hc
Q 016864 289 YL 290 (381)
Q Consensus 289 ~l 290 (381)
.+
T Consensus 619 ~~ 620 (712)
T PRK09518 619 AL 620 (712)
T ss_pred HH
Confidence 44
No 56
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.71 E-value=8e-17 Score=138.99 Aligned_cols=154 Identities=28% Similarity=0.347 Sum_probs=108.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcc----hhhhhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGR----GRQVISTA 140 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~----~~~~~~~~ 140 (381)
.+|+++|.+|+|||||+|+|++... ..++.+++|++.....+.+++..+.++||||+.+..+..... ..+....+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~ 82 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAI 82 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHH
Confidence 6899999999999999999998763 457889999999888888889999999999986543211111 11223345
Q ss_pred CCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcc
Q 016864 141 RTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADI 220 (381)
Q Consensus 141 ~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 220 (381)
..+|++++|+|+..+...... .++..
T Consensus 83 ~~~d~vi~v~d~~~~~~~~~~----------------------------------------------~~~~~-------- 108 (174)
T cd01895 83 ERADVVLLVIDATEGITEQDL----------------------------------------------RIAGL-------- 108 (174)
T ss_pred hhcCeEEEEEeCCCCcchhHH----------------------------------------------HHHHH--------
Confidence 789999999999876422110 00000
Q ss_pred ccccCCChhHHHHHHhcccccccEEEEEecCCcCCH--HHHH----HHh------cCCCeeeecccccccHHHHHHHHHH
Q 016864 221 TLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL--EELE----ILD------KLPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 221 ~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~--~~l~----~l~------~~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
+... .+|+++++||+|+... ...+ .+. ...+++++||.++.|++++.+.+..
T Consensus 109 --------------~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 109 --------------ILEE--GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred --------------HHhc--CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHH
Confidence 0001 2699999999999754 2221 121 1356899999999999999988765
Q ss_pred H
Q 016864 289 Y 289 (381)
Q Consensus 289 ~ 289 (381)
.
T Consensus 173 ~ 173 (174)
T cd01895 173 V 173 (174)
T ss_pred h
Confidence 3
No 57
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=3.7e-17 Score=171.55 Aligned_cols=157 Identities=22% Similarity=0.257 Sum_probs=114.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccC-CCcchhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD-GKGRGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~-~~~~~~~~~~~~~~ 142 (381)
..+|+|+|.||||||||+|+|+|... .+++.|++|++...+...+++..+.++||||+...... ......+....+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 46899999999999999999999764 56889999999999999999999999999997642110 01122344446789
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|+..+....+. .+...|..
T Consensus 355 aD~iL~VvDa~~~~~~~d~-------------------------------------------~i~~~Lr~---------- 381 (712)
T PRK09518 355 ADAVVFVVDGQVGLTSTDE-------------------------------------------RIVRMLRR---------- 381 (712)
T ss_pred CCEEEEEEECCCCCCHHHH-------------------------------------------HHHHHHHh----------
Confidence 9999999999765321110 01111111
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH-HHH--hcCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL-EIL--DKLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l-~~l--~~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
..+|+|+|+||+|+...... ... ..+...+++||+++.|+++|++.+.+.++
T Consensus 382 -----------------~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 382 -----------------AGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred -----------------cCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhcc
Confidence 12799999999998643221 111 23445789999999999999999998775
No 58
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.70 E-value=5.6e-17 Score=141.16 Aligned_cols=143 Identities=22% Similarity=0.193 Sum_probs=113.3
Q ss_pred CCCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcch
Q 016864 54 GGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRG 133 (381)
Q Consensus 54 ~~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~ 133 (381)
+++++++.+ | ..++|+||+|||||||+++|.+...+ +.|.|.++|..+..-. -........++.
T Consensus 19 kgi~l~v~~-G-evv~iiGpSGSGKSTlLRclN~LE~~-----------~~G~I~i~g~~~~~~~---~~~~~R~~vGmV 82 (240)
T COG1126 19 KGISLSVEK-G-EVVVIIGPSGSGKSTLLRCLNGLEEP-----------DSGSITVDGEDVGDKK---DILKLRRKVGMV 82 (240)
T ss_pred cCcceeEcC-C-CEEEEECCCCCCHHHHHHHHHCCcCC-----------CCceEEECCEeccchh---hHHHHHHhcCee
Confidence 356666665 3 89999999999999999999999988 9999999997654321 112223445677
Q ss_pred hhhhcccCCcchhHHHHhcC------CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecc
Q 016864 134 RQVISTARTCNCILIVLDAI------KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 134 ~~~~~~~~~~d~il~vvd~~------~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
.|.++++++.+++-.+.-+. ...+..+...++|++.|+ ..+.+|..||+|++||.+|+ +..||
T Consensus 83 FQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE 162 (240)
T COG1126 83 FQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162 (240)
T ss_pred cccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC
Confidence 88888889998877765432 234556678899999999 89999999999999999997 67799
Q ss_pred cCCCCCHHHHHHHHHH
Q 016864 197 TNTNLDLDTVKAICSE 212 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~~ 212 (381)
|++.||++.+..+|.-
T Consensus 163 PTSALDPElv~EVL~v 178 (240)
T COG1126 163 PTSALDPELVGEVLDV 178 (240)
T ss_pred CcccCCHHHHHHHHHH
Confidence 9999999998887763
No 59
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.69 E-value=5.9e-17 Score=139.73 Aligned_cols=150 Identities=23% Similarity=0.205 Sum_probs=100.8
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccc----cccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEV----ASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~----~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
+|+++|++|||||||++.|++...+. .....+|+....+.+.+++..+.++||||..... ......+..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 73 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR-------SLWDKYYAE 73 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH-------HHHHHHhCC
Confidence 48999999999999999998754321 2234667777778889999999999999975432 122234688
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|+.++.. .......+ ..++...
T Consensus 74 ~~~~v~vvd~~~~~~-~~~~~~~~----------------------------------------~~~~~~~--------- 103 (167)
T cd04160 74 CHAIIYVIDSTDRER-FEESKSAL----------------------------------------EKVLRNE--------- 103 (167)
T ss_pred CCEEEEEEECchHHH-HHHHHHHH----------------------------------------HHHHhCh---------
Confidence 999999999876531 11111111 1111100
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH---HHHHHH-hc--------CCCeeeecccccccHHHHHHHHHH
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL---EELEIL-DK--------LPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~~l-~~--------~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
.....|+++++||+|+... +++..+ .. ..+++.+||+++.|++++++++.+
T Consensus 104 ---------------~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 104 ---------------ALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred ---------------hhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 0012699999999998643 222222 11 125899999999999999988864
No 60
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.69 E-value=5e-17 Score=163.04 Aligned_cols=174 Identities=24% Similarity=0.300 Sum_probs=121.7
Q ss_pred CceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC-EEeeecCcccccccccCCCcchh
Q 016864 56 EGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG-AKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 56 ~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g-~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
.+.++....+.+|||||+||+|||||+++|+|...+ ..|.|.+.+ ..+.++..--...
T Consensus 20 ~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~-----------~~G~i~~~~~~~v~~l~Q~~~~~---------- 78 (530)
T COG0488 20 ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP-----------DSGEVTRPKGLRVGYLSQEPPLD---------- 78 (530)
T ss_pred cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC-----------CCCeEeecCCceEEEeCCCCCcC----------
Confidence 344444445589999999999999999999999877 778777653 3444332100000
Q ss_pred hhhcccCCcchhHHHHhcC-----------------------------------CChHHHHHHHHHHHhcccc-cccCcC
Q 016864 135 QVISTARTCNCILIVLDAI-----------------------------------KPITHKRLIEKELEGFGIR-LNKQPP 178 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~~-----------------------------------~~~~~~~~i~~~l~~~~~~-~~~~~~ 178 (381)
...++.-.|+++. +...-...+...|..+++. ..+++.
T Consensus 79 ------~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~ 152 (530)
T COG0488 79 ------PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVS 152 (530)
T ss_pred ------CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchh
Confidence 0011111111111 1122224555667777773 388999
Q ss_pred cccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH
Q 016864 179 NLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE 258 (381)
Q Consensus 179 ~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~ 258 (381)
.||+|++.| ..|....+.+++++++|||| ||+|+.+..|
T Consensus 153 ~LSGG~r~R--------------------v~LA~aL~~~pDlLLLDEPT---------------------NHLD~~~i~W 191 (530)
T COG0488 153 SLSGGWRRR--------------------VALARALLEEPDLLLLDEPT---------------------NHLDLESIEW 191 (530)
T ss_pred hcCHHHHHH--------------------HHHHHHHhcCCCEEEEcCCC---------------------cccCHHHHHH
Confidence 999999988 55667778889999999999 9999999999
Q ss_pred HHH-HhcCCCeeeecccccccHHHHHHHHHHHcC-CcEEEe
Q 016864 259 LEI-LDKLPHYCPVSAHLEWNLDGLLEKIWEYLN-LTRIYT 297 (381)
Q Consensus 259 l~~-l~~~~~~v~vSa~~~~gl~~L~~~i~~~l~-~~~~~~ 297 (381)
++. +..+++++++.||++++++++++.|+++-. ....|+
T Consensus 192 Le~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~ 232 (530)
T COG0488 192 LEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYK 232 (530)
T ss_pred HHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEec
Confidence 975 468888999999999999999999988543 344454
No 61
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.69 E-value=2.5e-17 Score=133.82 Aligned_cols=89 Identities=36% Similarity=0.550 Sum_probs=73.6
Q ss_pred EEEEEcCCCCchHHHHHHHhccc-ccccccccceeeeecEEEEEcCEEeeecCcccccccccCCC--cchhhhhcccCCc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTF-SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK--GRGRQVISTARTC 143 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~-~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~--~~~~~~~~~~~~~ 143 (381)
+|+++|++|||||||+|+|+|.. ..+++.+++|+++..+.+.+++..+.++||||+.+...... ....+++..+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 68999999999999999999964 47899999999998899999999999999999987543321 1233456666899
Q ss_pred chhHHHHhcCCC
Q 016864 144 NCILIVLDAIKP 155 (381)
Q Consensus 144 d~il~vvd~~~~ 155 (381)
|++++|+|+..+
T Consensus 81 d~ii~vv~~~~~ 92 (116)
T PF01926_consen 81 DLIIYVVDASNP 92 (116)
T ss_dssp SEEEEEEETTSH
T ss_pred CEEEEEEECCCC
Confidence 999999997763
No 62
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.69 E-value=4.7e-17 Score=143.71 Aligned_cols=148 Identities=28% Similarity=0.322 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccccc------------------ccccceeeeecEEEE--EcCEEeeecCccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVA------------------SYEFTTLTCIPGVIT--YRGAKIQLLDLPGIIEG 125 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~------------------~~~~tT~~~~~g~i~--~~g~~i~l~DtpG~~~~ 125 (381)
.+|+++|+.++|||||+++|++....+. ...+.|.+.....+. +++..+.++||||..+.
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f 83 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDF 83 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHH
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccce
Confidence 6899999999999999999976543211 134778877777787 88999999999998654
Q ss_pred ccCCCcchhhhhcccCCcchhHHHHhcCCChH-HHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHH
Q 016864 126 AKDGKGRGRQVISTARTCNCILIVLDAIKPIT-HKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLD 204 (381)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~-~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~ 204 (381)
. .++...+..+|++++|+|+..+.. +.......
T Consensus 84 ~-------~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~--------------------------------------- 117 (188)
T PF00009_consen 84 I-------KEMIRGLRQADIAILVVDANDGIQPQTEEHLKI--------------------------------------- 117 (188)
T ss_dssp H-------HHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHH---------------------------------------
T ss_pred e-------ecccceecccccceeeeeccccccccccccccc---------------------------------------
Confidence 3 455666789999999999987632 22111111
Q ss_pred HHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH------HH-HH---hc-----CCCee
Q 016864 205 TVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE------LE-IL---DK-----LPHYC 269 (381)
Q Consensus 205 ~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~------l~-~l---~~-----~~~~v 269 (381)
+.. ..+|.|+|+||+|+...+. +. .+ .. ..+++
T Consensus 118 -----~~~---------------------------~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi 165 (188)
T PF00009_consen 118 -----LRE---------------------------LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVI 165 (188)
T ss_dssp -----HHH---------------------------TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEE
T ss_pred -----ccc---------------------------cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEE
Confidence 111 1269999999999983221 11 22 11 23699
Q ss_pred eecccccccHHHHHHHHHHHcC
Q 016864 270 PVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 270 ~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
++||.+|.|+++|++.+.+.++
T Consensus 166 ~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 166 PISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp EEBTTTTBTHHHHHHHHHHHS-
T ss_pred EEecCCCCCHHHHHHHHHHhCc
Confidence 9999999999999999998875
No 63
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.69 E-value=1.3e-16 Score=136.37 Aligned_cols=153 Identities=37% Similarity=0.454 Sum_probs=106.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCc-chhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG-RGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~-~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|+|... .+++.+.+|.....+.+...+..+.++||||+......... ........+..+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDV 83 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999764 45667788888877777777789999999998654321100 111223346788
Q ss_pred chhHHHHhcCCChH-HHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 144 NCILIVLDAIKPIT-HKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 144 d~il~vvd~~~~~~-~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
|++++|+|+.++.. ....+. ..+..
T Consensus 84 d~i~~v~d~~~~~~~~~~~~~--------------------------------------------~~~~~---------- 109 (168)
T cd04163 84 DLVLFVVDASEPIGEGDEFIL--------------------------------------------ELLKK---------- 109 (168)
T ss_pred CEEEEEEECCCccCchHHHHH--------------------------------------------HHHHH----------
Confidence 99999999887621 111111 11111
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcC-CHHHHH----HHh---cCCCeeeecccccccHHHHHHHHHHH
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQI-TLEELE----ILD---KLPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~-~~~~l~----~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
. ..|.++|+||+|+. ..+.+. .+. ...+++.+|+.++.|++++.+.+.+.
T Consensus 110 ---------------~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 110 ---------------S--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ---------------h--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 0 15999999999998 333322 222 23578999999999999999988764
No 64
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.68 E-value=2.6e-16 Score=134.76 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=105.5
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|++|||||||++++++.....+..|++|.+.....+.+++. .+.++||||..... ......++.+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~-------~~~~~~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR-------SLIPSYIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhccCC
Confidence 7999999999999999999998777777888898988888888774 58899999954321 11223468899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|.+++..- +.+.. ++..+..
T Consensus 75 ~ii~v~d~~~~~s~-~~~~~--------------------------------------------~~~~~~~--------- 100 (161)
T cd01861 75 VAVVVYDITNRQSF-DNTDK--------------------------------------------WIDDVRD--------- 100 (161)
T ss_pred EEEEEEECcCHHHH-HHHHH--------------------------------------------HHHHHHH---------
Confidence 99999999875321 11111 1111100
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHH
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
......|+++|+||+|+.. .++...+.. ..+++.+||.++.|++++.+.+.+.
T Consensus 101 ------------~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 101 ------------ERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ------------hCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 0001269999999999942 222322221 2458899999999999999998764
No 65
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.68 E-value=1.4e-16 Score=141.07 Aligned_cols=148 Identities=28% Similarity=0.280 Sum_probs=102.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcc-------cccccccccceeeeecEEEEEc--------------CEEeeecCccccccc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGT-------FSEVASYEFTTLTCIPGVITYR--------------GAKIQLLDLPGIIEG 125 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~-------~~~~~~~~~tT~~~~~g~i~~~--------------g~~i~l~DtpG~~~~ 125 (381)
+|+++|++|+|||||+++|++. ....+..+++|++.....+.+. +..+.++||||....
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 81 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASL 81 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHH
Confidence 7999999999999999999873 1233456789998887777665 678999999997432
Q ss_pred ccCCCcchhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHH
Q 016864 126 AKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDT 205 (381)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~ 205 (381)
.......+..+|++++|+|+..+...... +.
T Consensus 82 -------~~~~~~~~~~~d~vi~VvD~~~~~~~~~~--~~---------------------------------------- 112 (192)
T cd01889 82 -------IRTIIGGAQIIDLMLLVVDATKGIQTQTA--EC---------------------------------------- 112 (192)
T ss_pred -------HHHHHHHHhhCCEEEEEEECCCCccHHHH--HH----------------------------------------
Confidence 24444455778999999999764211100 00
Q ss_pred HHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH----HHH--------Hh----cCCCee
Q 016864 206 VKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE----LEI--------LD----KLPHYC 269 (381)
Q Consensus 206 v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~----l~~--------l~----~~~~~v 269 (381)
+ .+... ..+|.++++||+|+...++ .+. +. ...+++
T Consensus 113 ~-~~~~~---------------------------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi 164 (192)
T cd01889 113 L-VIGEI---------------------------LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPII 164 (192)
T ss_pred H-HHHHH---------------------------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEE
Confidence 0 00000 0259999999999974332 111 11 124689
Q ss_pred eecccccccHHHHHHHHHHHcC
Q 016864 270 PVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 270 ~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
++||+++.|+++|++.+.+...
T Consensus 165 ~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 165 PVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred EEeccCCCCHHHHHHHHHhccc
Confidence 9999999999999999988654
No 66
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.67 E-value=2.7e-16 Score=135.50 Aligned_cols=148 Identities=23% Similarity=0.210 Sum_probs=101.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc---CEEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR---GAKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~---g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
+.|+++|++|||||||+|+|++........+++|.+.....+.+. +..+.++||||..... ......+..
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~-------~~~~~~~~~ 73 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT-------NMRARGASL 73 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH-------HHHHHHHhh
Confidence 369999999999999999999876555566778887766666664 6789999999974421 111223478
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|++++..... ...+ ..+..
T Consensus 74 ~d~il~v~d~~~~~~~~~--~~~~-----------------------------------------~~~~~---------- 100 (168)
T cd01887 74 TDIAILVVAADDGVMPQT--IEAI-----------------------------------------KLAKA---------- 100 (168)
T ss_pred cCEEEEEEECCCCccHHH--HHHH-----------------------------------------HHHHH----------
Confidence 999999999986521100 0000 00110
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH--HH----HHHHh--------cCCCeeeecccccccHHHHHHHHHH
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL--EE----LEILD--------KLPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~--~~----l~~l~--------~~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
..+|.++|+||+|+... +. +..+. ...+++++||.++.|+++|++.+.+
T Consensus 101 -----------------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T cd01887 101 -----------------ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILL 163 (168)
T ss_pred -----------------cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHH
Confidence 12699999999998742 11 11111 1236899999999999999999877
Q ss_pred Hc
Q 016864 289 YL 290 (381)
Q Consensus 289 ~l 290 (381)
..
T Consensus 164 ~~ 165 (168)
T cd01887 164 LA 165 (168)
T ss_pred hh
Confidence 53
No 67
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.67 E-value=3.7e-16 Score=137.15 Aligned_cols=148 Identities=24% Similarity=0.298 Sum_probs=103.4
Q ss_pred EEEEEcCCCCchHHHHHHHhccccccc----------------ccccceeeeecEEEEEcCEEeeecCcccccccccCCC
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVA----------------SYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK 130 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~----------------~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~ 130 (381)
+|+++|.+|||||||+|+|++...... ...++|.+.....+.+.+..+.++||||.....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 489999999999999999988754432 134667777777777888899999999975432
Q ss_pred cchhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHH
Q 016864 131 GRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAIC 210 (381)
Q Consensus 131 ~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l 210 (381)
......++.+|++++|+|+.++..... . ..+
T Consensus 77 ---~~~~~~~~~~d~~i~v~d~~~~~~~~~--~--------------------------------------------~~~ 107 (189)
T cd00881 77 ---SEVIRGLSVSDGAILVVDANEGVQPQT--R--------------------------------------------EHL 107 (189)
T ss_pred ---HHHHHHHHhcCEEEEEEECCCCCcHHH--H--------------------------------------------HHH
Confidence 233345678999999999887532100 0 000
Q ss_pred HHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH-------HHH-Hh---------------cCCC
Q 016864 211 SEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-------LEI-LD---------------KLPH 267 (381)
Q Consensus 211 ~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-------l~~-l~---------------~~~~ 267 (381)
.. +.. ..+|+++|+||+|+...+. +.. +. ...+
T Consensus 108 ~~----------------------~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (189)
T cd00881 108 RI----------------------ARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVP 163 (189)
T ss_pred HH----------------------HHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcce
Confidence 00 000 1269999999999985321 211 11 1356
Q ss_pred eeeecccccccHHHHHHHHHHHcC
Q 016864 268 YCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 268 ~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
++++||.++.|++++++.+...++
T Consensus 164 v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 164 IVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred EEEEecccCcCHHHHHHHHHhhCC
Confidence 899999999999999999988764
No 68
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.67 E-value=7e-16 Score=149.74 Aligned_cols=225 Identities=20% Similarity=0.255 Sum_probs=156.7
Q ss_pred CCHHHHHHHHHHHHHhhhhh-hhhhHhhHHHHHHHHHHHHHhcCCCCCCC----------CC--C-----CCCce-----
Q 016864 2 ATVMQKIKDIEDEMARTQKN-KATAHHLGLLKAKLAKLRRELLTPTSKGG----------GG--G-----GGEGF----- 58 (381)
Q Consensus 2 ~~~~~~i~~l~~~i~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~----------~~--~-----~~~~~----- 58 (381)
+..|+.|.+.+++|++.-.. ..-.+++....+.+.++...-...+..+. +. . .+++|
T Consensus 323 ~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~ 402 (614)
T KOG0927|consen 323 EKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDN 402 (614)
T ss_pred HHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEEEeccccCCCCc
Confidence 35688899999999987542 22334455555666666654322210000 00 0 12222
Q ss_pred -------eEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCc
Q 016864 59 -------DVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG 131 (381)
Q Consensus 59 -------~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~ 131 (381)
++-.+-+.+|++|||||||||||++.++|...| ..|++... ....+. .+.+
T Consensus 403 ~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-----------~~G~vs~~-~H~~~~----~y~Q------ 460 (614)
T KOG0927|consen 403 PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-----------TIGMVSRH-SHNKLP----RYNQ------ 460 (614)
T ss_pred chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc-----------cccccccc-ccccch----hhhh------
Confidence 222333479999999999999999999999888 78877643 222221 1111
Q ss_pred chhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccceeeecccCCCCCHHHHHH
Q 016864 132 RGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKA 208 (381)
Q Consensus 132 ~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~ 208 (381)
++.....-....+-++++...+..+.+.++.+|+.||+ ....+...||.|++.| .
T Consensus 461 --h~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~r--------------------V 518 (614)
T KOG0927|consen 461 --HLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRR--------------------V 518 (614)
T ss_pred --hhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchh--------------------H
Confidence 11112223455577888877666778889999999999 5677889999999998 5
Q ss_pred HHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH-HHHhcCCCeeeecccccccHHHHHHHHH
Q 016864 209 ICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL-EILDKLPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 209 ~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l-~~l~~~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
++..+.+....++++|||| |++|+.+.+.+ +++.+|++.+++.+|+-..|.++.+.+|
T Consensus 519 lFa~l~~kqP~lLlLDEPt---------------------nhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~ 577 (614)
T KOG0927|consen 519 LFARLAVKQPHLLLLDEPT---------------------NHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIW 577 (614)
T ss_pred HHHHHHhcCCcEEEecCCC---------------------cCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhH
Confidence 5667777888888889988 99999998887 5678899988899999999999999999
Q ss_pred HHcC
Q 016864 288 EYLN 291 (381)
Q Consensus 288 ~~l~ 291 (381)
..-+
T Consensus 578 ~c~~ 581 (614)
T KOG0927|consen 578 VCEN 581 (614)
T ss_pred hhcc
Confidence 8554
No 69
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.67 E-value=7.6e-16 Score=137.11 Aligned_cols=161 Identities=18% Similarity=0.239 Sum_probs=100.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCccccccccc-CCCcchhhhhcccCCc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAK-DGKGRGRQVISTARTC 143 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~ 143 (381)
+|+++|.+|||||||++.+++...+....|.++.+.....+.++| ..+.++||||...... .+..........++.+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 799999999999999999988654433344444444444567777 4677999999754321 1111111122346899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++.. .+.+. .++..+
T Consensus 82 d~iilv~D~~~~~S-~~~~~--------------------------------------------~~~~~i---------- 106 (198)
T cd04142 82 RAFILVYDICSPDS-FHYVK--------------------------------------------LLRQQI---------- 106 (198)
T ss_pred CEEEEEEECCCHHH-HHHHH--------------------------------------------HHHHHH----------
Confidence 99999999987632 11111 111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh---cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD---KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.+........+|+++|.||+|+... +++..+. ...+++.+||++|.|++++++.+....
T Consensus 107 --------~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 107 --------LETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred --------HHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 0000000112699999999999532 2333332 235679999999999999999988744
No 70
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.66 E-value=1.3e-16 Score=143.23 Aligned_cols=82 Identities=23% Similarity=0.231 Sum_probs=65.7
Q ss_pred EEEEEcCCCCchHHHHHHHhccccccc-------------------------------ccccceeeeecEEEEEcCEEee
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVA-------------------------------SYEFTTLTCIPGVITYRGAKIQ 115 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~-------------------------------~~~~tT~~~~~g~i~~~g~~i~ 115 (381)
+|+++|++|+|||||+++|++....+. ..+++|+++....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975432221 1278899999999999999999
Q ss_pred ecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 116 LLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 116 l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
++||||+.+.. ......+..+|++++|+|+..+
T Consensus 81 liDTpG~~~~~-------~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 81 IADTPGHEQYT-------RNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred EEECCcHHHHH-------HHHHHhhhhCCEEEEEEECCCC
Confidence 99999975432 3344456899999999999876
No 71
>PRK04213 GTP-binding protein; Provisional
Probab=99.66 E-value=4.3e-16 Score=138.89 Aligned_cols=54 Identities=33% Similarity=0.397 Sum_probs=45.7
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI 122 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~ 122 (381)
..+|+++|++|||||||+|+|+|....++..|++|+++.. +.++ .+.++||||+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG--DFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec--ceEEEeCCcc
Confidence 3799999999999999999999987777888999987653 3333 6899999996
No 72
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.65 E-value=8.5e-16 Score=132.26 Aligned_cols=152 Identities=23% Similarity=0.176 Sum_probs=102.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||++++++........|.++.+.....+.+++. .+.++||||...... .....++.+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~ 76 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA-------ITSAYYRGA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH-------HHHHHHCCC
Confidence 58999999999999999999987655555677777766677777764 678999999754221 112245788
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
+++++|+|++++.. .+.+. .++..+..
T Consensus 77 ~~~i~v~d~~~~~s-~~~~~--------------------------------------------~~~~~~~~-------- 103 (165)
T cd01868 77 VGALLVYDITKKQT-FENVE--------------------------------------------RWLKELRD-------- 103 (165)
T ss_pred CEEEEEEECcCHHH-HHHHH--------------------------------------------HHHHHHHH--------
Confidence 99999999986532 11111 11111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. .....|+++|+||+|+... ++...+.. ..+++.+||+++.|++++++.+...+
T Consensus 104 ----------~---~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 104 ----------H---ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ----------h---CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 0 0012699999999998632 22222222 23589999999999999999987643
No 73
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.65 E-value=1.1e-15 Score=134.41 Aligned_cols=149 Identities=20% Similarity=0.184 Sum_probs=101.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|++|||||||++.+++.... . ..+|..+..+.+.+++.++.++||||..... ......+..+|+
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~ad~ 87 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLA--Q-HQPTQHPTSEELAIGNIKFTTFDLGGHQQAR-------RLWKDYFPEVNG 87 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--c-cCCccccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhCCCCE
Confidence 79999999999999999999986422 1 1346666777888889999999999975432 112234588999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|++++..- ......+ ..++...
T Consensus 88 ii~vvD~~~~~~~-~~~~~~l----------------------------------------~~l~~~~------------ 114 (184)
T smart00178 88 IVYLVDAYDKERF-AESKREL----------------------------------------DALLSDE------------ 114 (184)
T ss_pred EEEEEECCcHHHH-HHHHHHH----------------------------------------HHHHcCh------------
Confidence 9999999876321 1111111 1111100
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcC---CHHHHHHHh--------------cCCCeeeecccccccHHHHHHHHHH
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQI---TLEELEILD--------------KLPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~---~~~~l~~l~--------------~~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
....+|+++|+||+|+. +.+++.... ....++++||+++.|++++++++.+
T Consensus 115 ------------~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 115 ------------ELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred ------------hhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 00126999999999986 344443221 1223899999999999999999875
Q ss_pred H
Q 016864 289 Y 289 (381)
Q Consensus 289 ~ 289 (381)
.
T Consensus 183 ~ 183 (184)
T smart00178 183 Y 183 (184)
T ss_pred h
Confidence 3
No 74
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.65 E-value=7.7e-16 Score=130.03 Aligned_cols=150 Identities=30% Similarity=0.305 Sum_probs=97.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++...+.+..+++|.+.....+.+++ ..+.++|+||..+..........+....+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 5899999999999999999999886667788999998888888888 78899999996443211111112222233444
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|+.++|+++...... . ...+.
T Consensus 82 d~~~~v~~~~~~~~~--~--------------------------------------------~~~~~------------- 102 (161)
T TIGR00231 82 DIVILVLDVEEILEK--Q--------------------------------------------TKEII------------- 102 (161)
T ss_pred EEeeeehhhhhHhHH--H--------------------------------------------HHHHH-------------
Confidence 555444444322100 0 00000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH---HHHH-H--hcCCCeeeecccccccHHHHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE---ELEI-L--DKLPHYCPVSAHLEWNLDGLLEKI 286 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~---~l~~-l--~~~~~~v~vSa~~~~gl~~L~~~i 286 (381)
..... ..|+++++||+|+.... .... + ....+++++||.++.|++++.+.+
T Consensus 103 ---------~~~~~---~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 103 ---------HHAES---NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred ---------Hhccc---CCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 00000 26999999999997632 2211 1 234568999999999999998875
No 75
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=9e-16 Score=159.38 Aligned_cols=217 Identities=17% Similarity=0.221 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHhcCC---C---------------------CCCCCCC-CCCce
Q 016864 4 VMQKIKDIEDEMARTQKNKATAHHLGLLKAKLAKLRRELLTP---T---------------------SKGGGGG-GGEGF 58 (381)
Q Consensus 4 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~---~---------------------~~~~~~~-~~~~~ 58 (381)
.+++++++++|+.++...+.+.+.++.+.++++++....... . ++.+++. ...++
T Consensus 252 ~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~il~~i 331 (638)
T PRK10636 252 QQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRAPESLPNPLLKMEKVSAGYGDRIILDSI 331 (638)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEecCCCccCCCceEEEEeeEEEeCCeeeeccc
Confidence 456788889999886544444455556666666654211100 0 0011111 12234
Q ss_pred eEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc-CEEeeecCcccccccccCCCcchhhhh
Q 016864 59 DVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR-GAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 59 ~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~-g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
++....+.+++|+|+||||||||+++|+|...+ ..|.+.++ +..+.++ .+... ..+
T Consensus 332 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----------~~G~i~~~~~~~igy~------~Q~~~------~~l 388 (638)
T PRK10636 332 KLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP-----------VSGEIGLAKGIKLGYF------AQHQL------EFL 388 (638)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCCEEEEEe------cCcch------hhC
Confidence 444445589999999999999999999998877 78888875 3333333 22100 000
Q ss_pred cccCCcchhHHHHhcCCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhc
Q 016864 138 STARTCNCILIVLDAIKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYR 214 (381)
Q Consensus 138 ~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~ 214 (381)
.....++..+... .+......+...|..+++ ..++++..||+|+++|..++ ...
T Consensus 389 --~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La--------------------~~l 445 (638)
T PRK10636 389 --RADESPLQHLARL-APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLA--------------------LIV 445 (638)
T ss_pred --CccchHHHHHHHh-CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHH--------------------HHH
Confidence 0111222222221 122234567788999988 36788999999999994443 333
Q ss_pred ccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH-HHhcCCCeeeecccccccHHHHHHHHH
Q 016864 215 IHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE-ILDKLPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 215 ~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~-~l~~~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
+..++++++|||| |.+|..+.+.+. .+..+.++|++++|+...++.+++.++
T Consensus 446 ~~~p~lLlLDEPt---------------------~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~ 498 (638)
T PRK10636 446 WQRPNLLLLDEPT---------------------NHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLY 498 (638)
T ss_pred hcCCCEEEEcCCC---------------------CCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEE
Confidence 5567777888887 788877666653 344556677788888877777666544
No 76
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.65 E-value=9.8e-16 Score=136.61 Aligned_cols=145 Identities=26% Similarity=0.252 Sum_probs=110.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++.. +..++|+||+|||||||+|.|.|.+.| +.|.+.++|..+.-.+-..........+++..
T Consensus 23 ~v~l~i~~--Ge~vaI~GpSGSGKSTLLniig~ld~p-----------t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvF 89 (226)
T COG1136 23 DVNLEIEA--GEFVAIVGPSGSGKSTLLNLLGGLDKP-----------TSGEVLINGKDLTKLSEKELAKLRRKKIGFVF 89 (226)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhcccCC-----------CCceEEECCEEcCcCCHHHHHHHHHHhEEEEC
Confidence 45555555 489999999999999999999999999 89999999977765544444444445567788
Q ss_pred hhhcccCCcchhHHHH----hcCCCh-HHHHHHHHHHHhccc--ccc-cCcCcccceeeccccce---------eeeccc
Q 016864 135 QVISTARTCNCILIVL----DAIKPI-THKRLIEKELEGFGI--RLN-KQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv----d~~~~~-~~~~~i~~~l~~~~~--~~~-~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
|...+++..++.-.|. =...+. ...+.+...++.+|+ ... ++|..||+|++||..++ +..|||
T Consensus 90 Q~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEP 169 (226)
T COG1136 90 QNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEP 169 (226)
T ss_pred ccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCc
Confidence 8888899888865543 111122 345667777778788 444 77999999999999997 777999
Q ss_pred CCCCCHHHHHHHHHH
Q 016864 198 NTNLDLDTVKAICSE 212 (381)
Q Consensus 198 ~~~l~~~~v~~~l~~ 212 (381)
+.++|.+.-+.++.-
T Consensus 170 TgnLD~~t~~~V~~l 184 (226)
T COG1136 170 TGNLDSKTAKEVLEL 184 (226)
T ss_pred cccCChHHHHHHHHH
Confidence 999999877766654
No 77
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.65 E-value=5e-16 Score=159.10 Aligned_cols=147 Identities=25% Similarity=0.318 Sum_probs=105.8
Q ss_pred cCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCC-cchhhhhcccCCcchhHHHH
Q 016864 72 GFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK-GRGRQVISTARTCNCILIVL 150 (381)
Q Consensus 72 G~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~-~~~~~~~~~~~~~d~il~vv 150 (381)
|.||||||||+|+|+|....++++|++|++...+.+.+++.++.++||||..+...... +...........+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999999888999999999999999999999999999999876432211 01111111235789999999
Q ss_pred hcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhH
Q 016864 151 DAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADD 230 (381)
Q Consensus 151 d~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~ 230 (381)
|+++......... ++.+
T Consensus 81 Dat~ler~l~l~~--------------------------------------------ql~~------------------- 97 (591)
T TIGR00437 81 DASNLERNLYLTL--------------------------------------------QLLE------------------- 97 (591)
T ss_pred cCCcchhhHHHHH--------------------------------------------HHHh-------------------
Confidence 9986432211111 0000
Q ss_pred HHHHHhcccccccEEEEEecCCcCCHH----HHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 231 LIDVIEGSRIYMPCIYVINKIDQITLE----ELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 231 ~~~~l~~~~~~~p~i~v~NK~Dl~~~~----~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
..+|+++|+||+|+.... +.+.+.+ ..+++++||+++.|++++.+.+.+..
T Consensus 98 ---------~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 98 ---------LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ---------cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 126999999999986322 2233322 24689999999999999999997753
No 78
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.65 E-value=6.3e-16 Score=132.42 Aligned_cols=82 Identities=16% Similarity=0.172 Sum_probs=56.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchh
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCI 146 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 146 (381)
+|+++|.+|||||||++.|++.......+. .|.......+.+.+..+.++||||...... .....++.+|++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~i 72 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKGNLSFTAFDMSGQGKYRG-------LWEHYYKNIQGI 72 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEECCEEEEEEECCCCHhhHH-------HHHHHHccCCEE
Confidence 489999999999999999998643222222 222223334556788999999999754321 112245889999
Q ss_pred HHHHhcCCCh
Q 016864 147 LIVLDAIKPI 156 (381)
Q Consensus 147 l~vvd~~~~~ 156 (381)
++|+|++++.
T Consensus 73 i~v~D~~~~~ 82 (162)
T cd04157 73 IFVIDSSDRL 82 (162)
T ss_pred EEEEeCCcHH
Confidence 9999998763
No 79
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.65 E-value=9.3e-16 Score=135.37 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=61.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|++|||||||+++|++.... ....|..+..+.+.+++.++.++|+||..... ......++.+|+
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ad~ 89 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNIKFKTFDLGGHEQAR-------RLWKDYFPEVDG 89 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhccCCE
Confidence 68999999999999999999986532 22346667778899999999999999964421 112234588999
Q ss_pred hHHHHhcCCC
Q 016864 146 ILIVLDAIKP 155 (381)
Q Consensus 146 il~vvd~~~~ 155 (381)
+++|+|.+++
T Consensus 90 iilV~D~~~~ 99 (190)
T cd00879 90 IVFLVDAADP 99 (190)
T ss_pred EEEEEECCcH
Confidence 9999998765
No 80
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.3e-15 Score=136.12 Aligned_cols=133 Identities=22% Similarity=0.188 Sum_probs=100.5
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++.. +..|+|+||+|||||||||.|+|...+ ..|.+.++|.++. -|| ...++..
T Consensus 21 ~i~L~v~~--GEfvsilGpSGcGKSTLLriiAGL~~p-----------~~G~V~~~g~~v~---~p~------~~~~~vF 78 (248)
T COG1116 21 DINLSVEK--GEFVAILGPSGCGKSTLLRLIAGLEKP-----------TSGEVLLDGRPVT---GPG------PDIGYVF 78 (248)
T ss_pred cceeEECC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCcccC---CCC------CCEEEEe
Confidence 44555544 489999999999999999999999988 8999999887661 122 2234556
Q ss_pred hhhcccCCcchhHHH---HhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIV---LDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|...+++..++.-.| ++.. ...+..+.+.+.|+.+|+ ..+++|..||+|++||.+++ +.+|||+
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 666677777775443 2322 223445688999999999 78899999999999999987 7789999
Q ss_pred CCCCHHHHHHH
Q 016864 199 TNLDLDTVKAI 209 (381)
Q Consensus 199 ~~l~~~~v~~~ 209 (381)
+.+|.-+-..+
T Consensus 159 gALDalTR~~l 169 (248)
T COG1116 159 GALDALTREEL 169 (248)
T ss_pred chhhHHHHHHH
Confidence 99998655544
No 81
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.64 E-value=1.9e-15 Score=130.98 Aligned_cols=150 Identities=20% Similarity=0.123 Sum_probs=98.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchh
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCI 146 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 146 (381)
+|+++|.+|||||||++++++... .. +.+|+......+.+.+..+.++||||..... ......++.+|++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~-------~~~~~~~~~ad~i 70 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHKLR-------PLWKHYYLNTQAV 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECCEEEEEEECCCChhcc-------hHHHHHhccCCEE
Confidence 588999999999999999988632 22 3445555556677788999999999975432 1222345889999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCC
Q 016864 147 LIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDA 226 (381)
Q Consensus 147 l~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~ 226 (381)
++|+|.+++..- +.+..++. .++...
T Consensus 71 i~V~D~s~~~s~-~~~~~~~~----------------------------------------~~~~~~------------- 96 (169)
T cd04158 71 VFVVDSSHRDRV-SEAHSELA----------------------------------------KLLTEK------------- 96 (169)
T ss_pred EEEEeCCcHHHH-HHHHHHHH----------------------------------------HHhcCh-------------
Confidence 999999875321 11111110 111000
Q ss_pred ChhHHHHHHhcccccccEEEEEecCCcCC---HHHHHHHhcC----C----CeeeecccccccHHHHHHHHHHHcC
Q 016864 227 TADDLIDVIEGSRIYMPCIYVINKIDQIT---LEELEILDKL----P----HYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 227 t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~---~~~l~~l~~~----~----~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.....|+++|.||+|+.. .+++..+... . .++.+||+++.|++++++++.+.+.
T Consensus 97 -----------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 97 -----------ELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred -----------hhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence 001259999999999863 3334333221 1 3567899999999999999987653
No 82
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.64 E-value=9.5e-16 Score=131.20 Aligned_cols=147 Identities=21% Similarity=0.162 Sum_probs=94.4
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchh
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCI 146 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 146 (381)
+|+++|++|||||||+++|+..... .. ..|+......+.+.+..+.++||||..... ......+..+|++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~~~i 70 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TT--IPTIGFNVETVTYKNLKFQVWDLGGQTSIR-------PYWRCYYSNTDAI 70 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-Cc--CCccCcCeEEEEECCEEEEEEECCCCHHHH-------HHHHHHhcCCCEE
Confidence 5899999999999999999765432 21 234444445566678899999999975432 1122346789999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCC
Q 016864 147 LIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDA 226 (381)
Q Consensus 147 l~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~ 226 (381)
++|+|++++..- ...... +..++...
T Consensus 71 i~v~d~~~~~~~-~~~~~~----------------------------------------~~~~~~~~------------- 96 (158)
T cd04151 71 IYVVDSTDRDRL-GTAKEE----------------------------------------LHAMLEEE------------- 96 (158)
T ss_pred EEEEECCCHHHH-HHHHHH----------------------------------------HHHHHhch-------------
Confidence 999998875321 101110 01111100
Q ss_pred ChhHHHHHHhcccccccEEEEEecCCcCCH---HHHH-HHhc--C----CCeeeecccccccHHHHHHHHHH
Q 016864 227 TADDLIDVIEGSRIYMPCIYVINKIDQITL---EELE-ILDK--L----PHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 227 t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~-~l~~--~----~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
....+|+++|+||+|+... .++. .+.. . .+++++||+++.|++++++.+.+
T Consensus 97 -----------~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 97 -----------ELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred -----------hhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 0012699999999998742 2332 2211 1 24899999999999999998764
No 83
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.64 E-value=1.1e-15 Score=135.32 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=98.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccc--ccccccccceeeeecEEEEEcCEEeeecCcccccccccCC--C----cchhhh
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTF--SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG--K----GRGRQV 136 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~--~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~--~----~~~~~~ 136 (381)
..+|+++|.+|||||||+|+|++.. ..+++.+++|++..... + +.++.++||||+....... . ......
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 3799999999999999999999864 45677888888765433 2 4689999999975321110 0 011122
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhccc
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIH 216 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~ 216 (381)
+......+++++|+|+..+....+. .+..++..
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~~-------------------------------------------~i~~~l~~---- 133 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELDL-------------------------------------------QMIEWLKE---- 133 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHHH-------------------------------------------HHHHHHHH----
Confidence 2222344566666776554221110 01111111
Q ss_pred CCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH-------HH-hc-CCCeeeecccccccHHHHHHHHH
Q 016864 217 NADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE-------IL-DK-LPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 217 ~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~-------~l-~~-~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
..+|+++++||+|+.+..+.+ .. .. ...++++||+++.|++++.+.+.
T Consensus 134 -----------------------~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~ 190 (196)
T PRK00454 134 -----------------------YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIA 190 (196)
T ss_pred -----------------------cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHH
Confidence 126899999999998654321 11 11 35789999999999999999988
Q ss_pred HHcC
Q 016864 288 EYLN 291 (381)
Q Consensus 288 ~~l~ 291 (381)
+.+.
T Consensus 191 ~~~~ 194 (196)
T PRK00454 191 KWLA 194 (196)
T ss_pred HHhc
Confidence 7653
No 84
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.63 E-value=1.1e-15 Score=129.07 Aligned_cols=150 Identities=29% Similarity=0.244 Sum_probs=107.3
Q ss_pred EEcCCCCchHHHHHHHhccccc-ccccccceeeeecEEEEEc-CEEeeecCcccccccccCCCcchhhhhcccCCcchhH
Q 016864 70 LVGFPSVGKSTLLNKLTGTFSE-VASYEFTTLTCIPGVITYR-GAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCIL 147 (381)
Q Consensus 70 lvG~~naGKSTLln~L~g~~~~-~~~~~~tT~~~~~g~i~~~-g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il 147 (381)
++|++|||||||+|+|++.... .++.+++|.+.....+.+. +..+.++||||+.................++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999997655 6788899998888777766 6799999999987755433221233344568899999
Q ss_pred HHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCC
Q 016864 148 IVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDAT 227 (381)
Q Consensus 148 ~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t 227 (381)
+|+|+..+....... ++..
T Consensus 81 ~v~~~~~~~~~~~~~----------------------------------------------~~~~--------------- 99 (163)
T cd00880 81 FVVDADLRADEEEEK----------------------------------------------LLEL--------------- 99 (163)
T ss_pred EEEeCCCCCCHHHHH----------------------------------------------HHHH---------------
Confidence 999998764321110 0000
Q ss_pred hhHHHHHHhcccccccEEEEEecCCcCCHHHHHHH----------hcCCCeeeecccccccHHHHHHHHHHH
Q 016864 228 ADDLIDVIEGSRIYMPCIYVINKIDQITLEELEIL----------DKLPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 228 ~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l----------~~~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
. .....|.++|+||+|+......... ....+++++||.++.|++++.+.+.+.
T Consensus 100 -------~--~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 100 -------L--RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred -------H--HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 0 0012699999999999865433221 123578999999999999999988764
No 85
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=2.1e-15 Score=129.98 Aligned_cols=151 Identities=17% Similarity=0.100 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||++++.+........+..+.+...-.+.+++ ..+.++||||..... ......++.+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~ 76 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFR-------TITQSYYRSA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhccC
Confidence 6899999999999999999976543222222223344445566776 477899999964322 1122345789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++.. .+.+.. ++..+...
T Consensus 77 d~~llv~d~~~~~s-~~~~~~--------------------------------------------~~~~i~~~------- 104 (165)
T cd01864 77 NGAIIAYDITRRSS-FESVPH--------------------------------------------WIEEVEKY------- 104 (165)
T ss_pred CEEEEEEECcCHHH-HHhHHH--------------------------------------------HHHHHHHh-------
Confidence 99999999987642 111111 11111000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh---cCCCeeeecccccccHHHHHHHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD---KLPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
.....|.++|+||+|+... ++...+. ....++.+||.++.|++++++.+.+.
T Consensus 105 --------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 105 --------------GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred --------------CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 0112699999999998733 2222332 22457999999999999999998764
No 86
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.63 E-value=1.5e-15 Score=135.77 Aligned_cols=148 Identities=26% Similarity=0.297 Sum_probs=95.6
Q ss_pred EEEEEcCCCCchHHHHHHHhcccc---cccccccceeeeecEEEEEc---------------------------C-----
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFS---EVASYEFTTLTCIPGVITYR---------------------------G----- 111 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~---~~~~~~~tT~~~~~g~i~~~---------------------------g----- 111 (381)
+||++|++|+|||||+++|++... +-.-..+.|..+....+.|. +
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 799999999999999999988732 11112233333322222221 2
Q ss_pred -EEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCCh--HHHHHHHHHHHhcccccccCcCcccceeeccc
Q 016864 112 -AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPI--THKRLIEKELEGFGIRLNKQPPNLTFRKKDKG 188 (381)
Q Consensus 112 -~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~--~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~ 188 (381)
..+.++||||.... ....+..+..+|++++|+|+..+. .+.....
T Consensus 82 ~~~i~~iDtPG~~~~-------~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l------------------------- 129 (203)
T cd01888 82 VRHVSFVDCPGHEIL-------MATMLSGAAVMDGALLLIAANEPCPQPQTSEHL------------------------- 129 (203)
T ss_pred ccEEEEEECCChHHH-------HHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-------------------------
Confidence 67899999996432 245566678899999999998642 1111100
Q ss_pred cceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----HHH--
Q 016864 189 GINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----EIL-- 262 (381)
Q Consensus 189 ~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~l-- 262 (381)
..+..+ . ..|+|+|+||+|+...... +.+
T Consensus 130 -------------------~~~~~~-------------------------~-~~~iiivvNK~Dl~~~~~~~~~~~~i~~ 164 (203)
T cd01888 130 -------------------AALEIM-------------------------G-LKHIIIVQNKIDLVKEEQALENYEQIKK 164 (203)
T ss_pred -------------------HHHHHc-------------------------C-CCcEEEEEEchhccCHHHHHHHHHHHHH
Confidence 001110 0 1478999999999864322 222
Q ss_pred --h----cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 263 --D----KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 263 --~----~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
. ...+++++||+++.|+++|++.+.+.++
T Consensus 165 ~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 165 FVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 1 1346899999999999999999988664
No 87
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.62 E-value=3.3e-15 Score=128.82 Aligned_cols=152 Identities=19% Similarity=0.114 Sum_probs=100.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||++++++........|..+.+.....+.+++. .+.++||||..... ......++.+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~ 75 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 75 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHhCcC
Confidence 58999999999999999999986554444455555555566666654 67899999964422 1112345889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++.. ...+..+ +..+..
T Consensus 76 ~~ii~v~d~~~~~s-~~~l~~~--------------------------------------------~~~~~~-------- 102 (166)
T cd01869 76 HGIIIVYDVTDQES-FNNVKQW--------------------------------------------LQEIDR-------- 102 (166)
T ss_pred CEEEEEEECcCHHH-HHhHHHH--------------------------------------------HHHHHH--------
Confidence 99999999987532 2222221 111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. ....|.++|+||+|+... ++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 103 -----------~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 103 -----------YA--SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred -----------hC--CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 00 012699999999998632 22222221 23689999999999999999987754
No 88
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=2e-15 Score=130.71 Aligned_cols=155 Identities=23% Similarity=0.248 Sum_probs=101.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhccc--ccccccccceeeeecEEEEEcCEEeeecCcccccccc-cC-----CCcchhh
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTF--SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGA-KD-----GKGRGRQ 135 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~--~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~-~~-----~~~~~~~ 135 (381)
..+-|+++|.+|||||||+|+|+|.. +.+|..||.|+..+.= .+++ .+.++|.||+--.. +. ......+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff--~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFF--EVDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEE--EecC-cEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 45899999999999999999999976 6889999999977643 3333 38899999984322 00 0001112
Q ss_pred hhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcc
Q 016864 136 VISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRI 215 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~ 215 (381)
.+..-.+..++++++|+.++..+.+. ++-+++..+
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~-------------------------------------------em~~~l~~~-- 134 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDR-------------------------------------------EMIEFLLEL-- 134 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHH-------------------------------------------HHHHHHHHc--
Confidence 22111234446667787776432111 122223222
Q ss_pred cCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----H----HHhcCC----CeeeecccccccHHHHH
Q 016864 216 HNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----E----ILDKLP----HYCPVSAHLEWNLDGLL 283 (381)
Q Consensus 216 ~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~----~l~~~~----~~v~vSa~~~~gl~~L~ 283 (381)
..|.++|+||+|.....+. . .+...+ .++.+|+..+.|+++|.
T Consensus 135 -------------------------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~ 189 (200)
T COG0218 135 -------------------------GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELK 189 (200)
T ss_pred -------------------------CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHH
Confidence 2699999999999875432 2 221111 27889999999999999
Q ss_pred HHHHHHcC
Q 016864 284 EKIWEYLN 291 (381)
Q Consensus 284 ~~i~~~l~ 291 (381)
..|.+.+.
T Consensus 190 ~~i~~~~~ 197 (200)
T COG0218 190 AKILEWLK 197 (200)
T ss_pred HHHHHHhh
Confidence 99988664
No 89
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.62 E-value=1.1e-15 Score=133.98 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=60.6
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhccc--ccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCc------chhh
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTF--SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG------RGRQ 135 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~--~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~------~~~~ 135 (381)
+..+|+++|++|+|||||+|+|++.. ..+++.+++|.++....+ + ..+.++||||+......... ....
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 93 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEE 93 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHH
Confidence 44799999999999999999999874 356778899988764433 3 37899999997543211000 0112
Q ss_pred hhcccCCcchhHHHHhcCCC
Q 016864 136 VISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~~~ 155 (381)
++.....+|++++|+|+..+
T Consensus 94 ~l~~~~~~~~ii~vvd~~~~ 113 (179)
T TIGR03598 94 YLEKRENLKGVVLLMDIRHP 113 (179)
T ss_pred HHHhChhhcEEEEEecCCCC
Confidence 22222346788889988765
No 90
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.62 E-value=3.2e-15 Score=129.16 Aligned_cols=152 Identities=20% Similarity=0.132 Sum_probs=99.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||++++++........|..+.+.....+.+++ ..+.++||||..... ......++++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~~~a 76 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR-------TITTAYYRGA 76 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH-------HHHHHHhCCC
Confidence 6899999999999999999998654333334444444445566666 467899999964422 1122346899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+..+ +..+...
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~--------------------------------------------~~~i~~~------- 104 (167)
T cd01867 77 MGIILVYDITDEKS-FENIRNW--------------------------------------------MRNIEEH------- 104 (167)
T ss_pred CEEEEEEECcCHHH-HHhHHHH--------------------------------------------HHHHHHh-------
Confidence 99999999876532 2222211 1111000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+++|.||+|+... ++...+.. ..+++.+||.++.|++++++.+.+.+
T Consensus 105 --------------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 105 --------------ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred --------------CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0012699999999999732 22222221 24689999999999999999988754
No 91
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.62 E-value=3e-15 Score=130.60 Aligned_cols=149 Identities=24% Similarity=0.314 Sum_probs=95.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc---------------cccccceeeeecEEEEE-----cCEEeeecCccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV---------------ASYEFTTLTCIPGVITY-----RGAKIQLLDLPGIIEG 125 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~---------------~~~~~tT~~~~~g~i~~-----~g~~i~l~DtpG~~~~ 125 (381)
+.|+++|.+|+|||||+++|++....+ ....++|..+....+.+ .+..+.++||||..+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 379999999999999999998743211 11234555554444444 2467889999998653
Q ss_pred ccCCCcchhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHH
Q 016864 126 AKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDT 205 (381)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~ 205 (381)
. ......++.+|++++|+|++++...... . .
T Consensus 81 ~-------~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~-----------------------------------------~ 111 (179)
T cd01890 81 S-------YEVSRSLAACEGALLLVDATQGVEAQTL-A-----------------------------------------N 111 (179)
T ss_pred H-------HHHHHHHHhcCeEEEEEECCCCccHhhH-H-----------------------------------------H
Confidence 2 2223345789999999999865321100 0 0
Q ss_pred HHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHH--H-HHHHh---cC--CCeeeecccccc
Q 016864 206 VKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE--E-LEILD---KL--PHYCPVSAHLEW 277 (381)
Q Consensus 206 v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~--~-l~~l~---~~--~~~v~vSa~~~~ 277 (381)
...+ .. ..+|+++|+||+|+.... . .+.+. .. ..++.+||.++.
T Consensus 112 ~~~~-------------------------~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (179)
T cd01890 112 FYLA-------------------------LE---NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGL 163 (179)
T ss_pred HHHH-------------------------HH---cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCC
Confidence 0000 00 126999999999986321 1 12221 22 248899999999
Q ss_pred cHHHHHHHHHHHcC
Q 016864 278 NLDGLLEKIWEYLN 291 (381)
Q Consensus 278 gl~~L~~~i~~~l~ 291 (381)
|+++|++.+.+.++
T Consensus 164 gi~~l~~~l~~~~~ 177 (179)
T cd01890 164 GVEDLLEAIVERIP 177 (179)
T ss_pred CHHHHHHHHHhhCC
Confidence 99999999987653
No 92
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.62 E-value=2.2e-15 Score=131.05 Aligned_cols=148 Identities=21% Similarity=0.195 Sum_probs=95.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|++|||||||+++|++.... .+. .|.......+.+++..+.++||||..... ......++.+|+
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~-~t~g~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~~d~ 84 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDID--TIS-PTLGFQIKTLEYEGYKLNIWDVGGQKTLR-------PYWRNYFESTDA 84 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC--CcC-CccccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhCCCCE
Confidence 68999999999999999999987321 111 22223344566778899999999975421 112234688999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|++++.... .+...+ ..++...
T Consensus 85 ~i~v~d~~~~~s~~-~~~~~~----------------------------------------~~~~~~~------------ 111 (173)
T cd04154 85 LIWVVDSSDRLRLD-DCKREL----------------------------------------KELLQEE------------ 111 (173)
T ss_pred EEEEEECCCHHHHH-HHHHHH----------------------------------------HHHHhCh------------
Confidence 99999998763211 111111 1111100
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcCCH---HHHHHHh-------cCCCeeeecccccccHHHHHHHHHH
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQITL---EELEILD-------KLPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~~l~-------~~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
.....|+++|+||+|+... ++++... ...+++.+||++|.|++++++++.+
T Consensus 112 ------------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 112 ------------RLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ------------hhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 0012699999999998642 3333322 1235899999999999999988753
No 93
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.62 E-value=1.1e-15 Score=131.23 Aligned_cols=140 Identities=19% Similarity=0.222 Sum_probs=93.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|++|||||||+|+|+|..... ...+.+.+.+. .++||||.....+. ....+...++.+|+
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~~---------~~~~~v~~~~~--~~iDtpG~~~~~~~---~~~~~~~~~~~ad~ 67 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTLA---------RKTQAVEFNDK--GDIDTPGEYFSHPR---WYHALITTLQDVDM 67 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCccC---------ccceEEEECCC--CcccCCccccCCHH---HHHHHHHHHhcCCE
Confidence 379999999999999999999875321 13344555443 36999998543211 12333445689999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|+..+..... ..+..+
T Consensus 68 il~v~d~~~~~s~~~-----------------------------------------------~~~~~~------------ 88 (158)
T PRK15467 68 LIYVHGANDPESRLP-----------------------------------------------AGLLDI------------ 88 (158)
T ss_pred EEEEEeCCCcccccC-----------------------------------------------HHHHhc------------
Confidence 999999986532100 000000
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcCCHH--HHHH-HhcC---CCeeeecccccccHHHHHHHHHHHcC
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQITLE--ELEI-LDKL---PHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~--~l~~-l~~~---~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
...+|+++++||+|+...+ .+.. +.+. .+++++||+++.|+++|++.+.+.+.
T Consensus 89 -------------~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 89 -------------GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred -------------cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 0126999999999986432 2222 1222 47999999999999999999988764
No 94
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.61 E-value=4.7e-15 Score=127.13 Aligned_cols=151 Identities=22% Similarity=0.167 Sum_probs=101.4
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|++|||||||++++++........+..+.+.....+.+++ ..+.++|+||..... ......++.+|
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 74 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR-------SITSSYYRGAV 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhCCCC
Confidence 799999999999999999998765544455555555555667766 577899999964432 11122457899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|..++... +.+. .++..+...
T Consensus 75 ~~ilv~d~~~~~s~-~~~~--------------------------------------------~~l~~~~~~-------- 101 (164)
T smart00175 75 GALLVYDITNRESF-ENLK--------------------------------------------NWLKELREY-------- 101 (164)
T ss_pred EEEEEEECCCHHHH-HHHH--------------------------------------------HHHHHHHHh--------
Confidence 99999999876432 1111 111111000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+++|+||+|+... +..+.+. ...+++.+||.++.|++++++.+.+.+
T Consensus 102 -------------~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 102 -------------ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred -------------CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0012699999999998642 2222221 124589999999999999999998764
No 95
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.61 E-value=4.7e-15 Score=127.89 Aligned_cols=152 Identities=17% Similarity=0.140 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||++++++........|.++.+...-.+..++ ..+.++||||..... ......++.+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~-------~~~~~~~~~~ 74 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR-------TITTAYYRGA 74 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHccCC
Confidence 4899999999999999999998653222223222222222344444 568899999965432 1122346899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|.+++. ..+.+..+ +..+...
T Consensus 75 ~~~l~v~d~~~~~-s~~~~~~~--------------------------------------------~~~i~~~------- 102 (165)
T cd01865 75 MGFILMYDITNEE-SFNAVQDW--------------------------------------------STQIKTY------- 102 (165)
T ss_pred cEEEEEEECCCHH-HHHHHHHH--------------------------------------------HHHHHHh-------
Confidence 9999999987653 22222222 1111000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh-cC-CCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD-KL-PHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~-~~-~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+++|+||+|+... ++...+. .. .+++.+||+++.|++++++.+...+
T Consensus 103 --------------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 103 --------------SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred --------------CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 0012699999999998642 2222222 11 2589999999999999999988754
No 96
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.61 E-value=5.8e-15 Score=133.18 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=99.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC---EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG---AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g---~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
+|+++|.+|||||||++.+++........|..+.|...-.+.+++ ..+.++||||..... ......++.+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~~~a 74 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG-------KMLDKYIYGA 74 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH-------HHHHHHhhcC
Confidence 799999999999999999998654433445555676666666643 578899999963321 1111235899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|.+++..- +.+..++ ..+...
T Consensus 75 d~iilV~D~t~~~s~-~~~~~w~-----------------------------------------~~l~~~---------- 102 (215)
T cd04109 75 HAVFLVYDVTNSQSF-ENLEDWY-----------------------------------------SMVRKV---------- 102 (215)
T ss_pred CEEEEEEECCCHHHH-HHHHHHH-----------------------------------------HHHHHh----------
Confidence 999999999876421 1111111 001110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
........|+++|.||+|+... +....+.. ..+.+.+||++|.|++++++.+...+.
T Consensus 103 -----------~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 103 -----------LKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred -----------ccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 0000012478999999999632 22333322 135788999999999999999987654
No 97
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.61 E-value=3.1e-15 Score=130.39 Aligned_cols=148 Identities=19% Similarity=0.131 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|++|||||||++.|++.... . ...|.....+.+.+++..+.++||||..... ......++.+|+
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d~ 85 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV-H--TSPTIGSNVEEIVYKNIRFLMWDIGGQESLR-------SSWNTYYTNTDA 85 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC-C--cCCccccceEEEEECCeEEEEEECCCCHHHH-------HHHHHHhhcCCE
Confidence 68999999999999999999765432 1 2334545556777788999999999975421 122234688999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|++++..- .....++ ..++...
T Consensus 86 vi~V~D~s~~~~~-~~~~~~l----------------------------------------~~~~~~~------------ 112 (174)
T cd04153 86 VILVIDSTDRERL-PLTKEEL----------------------------------------YKMLAHE------------ 112 (174)
T ss_pred EEEEEECCCHHHH-HHHHHHH----------------------------------------HHHHhch------------
Confidence 9999999875321 1111111 1111100
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcCC---HHHH-HHHh-----c-CCCeeeecccccccHHHHHHHHHH
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQIT---LEEL-EILD-----K-LPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~---~~~l-~~l~-----~-~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
....+|+++++||+|+.. .+++ +.+. . ..+++++||.++.|++++++.+..
T Consensus 113 ------------~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 113 ------------DLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred ------------hhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 001269999999999864 2333 2221 0 114789999999999999988753
No 98
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.61 E-value=9.4e-15 Score=125.35 Aligned_cols=152 Identities=25% Similarity=0.208 Sum_probs=99.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||++++.+.. ..+.++.|+.+.....+.+++. .+.++||||..+.. ......++.+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 74 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY-FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS-------AMREQYMRTG 74 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC-CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh-------HHHHHHHhhC
Confidence 589999999999999999998753 3456666666555555566664 67789999965432 1111245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++.. .+.+..++. .++.
T Consensus 75 ~~~ilv~d~~~~~s-~~~~~~~~~----------------------------------------~~~~------------ 101 (164)
T cd04145 75 EGFLLVFSVTDRGS-FEEVDKFHT----------------------------------------QILR------------ 101 (164)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHH----------------------------------------HHHH------------
Confidence 99999999987532 222211110 0100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh-c-CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. .....|+++|+||+|+... ++...+. . ..+++.+||+++.|++++++.+...+
T Consensus 102 ----------~~--~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 102 ----------VK--DRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ----------Hh--CCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 00 0112699999999998642 2222221 1 23689999999999999999987653
No 99
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.61 E-value=6.1e-15 Score=127.64 Aligned_cols=152 Identities=22% Similarity=0.146 Sum_probs=100.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++++++........+..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 77 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR-------SITRSYYRGA 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhccC
Confidence 5899999999999999999998764433334445555555666665 568899999954321 1122345789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+. .++..+...
T Consensus 78 d~il~v~d~~~~~s-~~~~~--------------------------------------------~~~~~~~~~------- 105 (168)
T cd01866 78 AGALLVYDITRRET-FNHLT--------------------------------------------SWLEDARQH------- 105 (168)
T ss_pred CEEEEEEECCCHHH-HHHHH--------------------------------------------HHHHHHHHh-------
Confidence 99999999986532 11121 222111000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+++|.||+|+.. .++...+. ....++.+||.++.|+++++..+.+.+
T Consensus 106 --------------~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 106 --------------SNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred --------------CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 011369999999999872 22333221 224578999999999999998887654
No 100
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=4.9e-15 Score=131.10 Aligned_cols=153 Identities=21% Similarity=0.156 Sum_probs=100.0
Q ss_pred EEEEEcCCCCchHHHHHHHhccccccccccccee-eeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTL-TCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~-~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
+|+++|.+|||||||++.+++.....+.++.|+. +...-.+.+++ ..+.++||||...... .....++.+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~a 74 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS-------VTHAYYRDA 74 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH-------hhHHHccCC
Confidence 7999999999999999999887655555555544 33333456665 4677899999543211 112346789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+..+ +..+
T Consensus 75 d~~i~v~D~~~~~s-~~~~~~~--------------------------------------------~~~i---------- 99 (191)
T cd04112 75 HALLLLYDITNKAS-FDNIRAW--------------------------------------------LTEI---------- 99 (191)
T ss_pred CEEEEEEECCCHHH-HHHHHHH--------------------------------------------HHHH----------
Confidence 99999999977532 1111111 1110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHcCC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLNL 292 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~~ 292 (381)
.+. .....|+++|+||+|+.. .++.+.+.. ..+++.+||.++.|++++++.+.+.+..
T Consensus 100 --------~~~---~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 100 --------KEY---AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred --------HHh---CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 000 011269999999999863 233333322 2368999999999999999999887643
No 101
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.60 E-value=8.3e-15 Score=126.69 Aligned_cols=155 Identities=17% Similarity=0.166 Sum_probs=97.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|++|||||||+|++++........+..+.+.....+.+++. .+.++|+||..... ......++.+|
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d 74 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFYRGAD 74 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHhcCCC
Confidence 7999999999999999999886543222222233444455666664 45689999964432 11223468899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++++|+.++... +.+..+.. .++......
T Consensus 75 ~~i~v~d~~~~~~~-~~~~~~~~----------------------------------------~~~~~~~~~-------- 105 (172)
T cd01862 75 CCVLVYDVTNPKSF-ESLDSWRD----------------------------------------EFLIQASPS-------- 105 (172)
T ss_pred EEEEEEECCCHHHH-HHHHHHHH----------------------------------------HHHHhcCcc--------
Confidence 99999998876421 11111110 111110000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHh---cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILD---KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
....+|+++|+||+|+.. .+.++.+. ...+++.+||+++.|++++++.+.+.+
T Consensus 106 -------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 106 -------------DPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred -------------CCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 011369999999999972 33333332 234789999999999999999987754
No 102
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.60 E-value=1.1e-14 Score=125.21 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=97.1
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|++|||||||++++++........|..+.+.....+.+++ ..+.++||||..... ......++.+|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~d 74 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL-------EVRNEFYKDTQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH-------HHHHHHhccCC
Confidence 799999999999999999998764433333333344344555554 567899999974422 11112357899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|.+++.. .+.+..++. .+..... ..
T Consensus 75 ~~ilv~D~~~~~s-~~~~~~~~~----------------------------------------~~~~~~~-~~------- 105 (168)
T cd04119 75 GVLLVYDVTDRQS-FEALDSWLK----------------------------------------EMKQEGG-PH------- 105 (168)
T ss_pred EEEEEEECCCHHH-HHhHHHHHH----------------------------------------HHHHhcc-cc-------
Confidence 9999999987632 111111111 0000000 00
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
......|+++|+||+|+.. .++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 106 ------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 106 ------------GNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ------------ccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0001269999999999862 223322221 24589999999999999999988653
No 103
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.60 E-value=3.6e-15 Score=129.35 Aligned_cols=81 Identities=19% Similarity=0.260 Sum_probs=57.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
..+|+++|++|||||||+++|+|..... ...|.......+.+++..+.++|+||..... ......++.+|
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~~ 83 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDGFKLNVWDIGGQRAIR-------PYWRNYFENTD 83 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhcCCC
Confidence 3799999999999999999999864321 1112222233677788999999999964421 12223457899
Q ss_pred hhHHHHhcCCC
Q 016864 145 CILIVLDAIKP 155 (381)
Q Consensus 145 ~il~vvd~~~~ 155 (381)
++++|+|++++
T Consensus 84 ~ii~v~D~~~~ 94 (173)
T cd04155 84 CLIYVIDSADK 94 (173)
T ss_pred EEEEEEeCCCH
Confidence 99999999864
No 104
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.60 E-value=3.4e-15 Score=126.68 Aligned_cols=147 Identities=22% Similarity=0.215 Sum_probs=94.0
Q ss_pred EEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchhH
Q 016864 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCIL 147 (381)
Q Consensus 68 i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il 147 (381)
|+++|++|||||||+|+|++........| |.......+..++..+.++||||..... ......+..+|+++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ii 72 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIP--TVGFNMRKVTKGNVTLKVWDLGGQPRFR-------SMWERYCRGVNAIV 72 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccC--CCCcceEEEEECCEEEEEEECCCCHhHH-------HHHHHHHhcCCEEE
Confidence 79999999999999999998754433333 2223334566677889999999975432 11223457899999
Q ss_pred HHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCC
Q 016864 148 IVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDAT 227 (381)
Q Consensus 148 ~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t 227 (381)
+|+|+..+... ......+ ..++...
T Consensus 73 ~v~d~~~~~~~-~~~~~~~----------------------------------------~~~~~~~-------------- 97 (159)
T cd04159 73 YVVDAADRTAL-EAAKNEL----------------------------------------HDLLEKP-------------- 97 (159)
T ss_pred EEEECCCHHHH-HHHHHHH----------------------------------------HHHHcCh--------------
Confidence 99998765321 1111111 0111000
Q ss_pred hhHHHHHHhcccccccEEEEEecCCcCCHHH---H-HHHh------cCCCeeeecccccccHHHHHHHHHH
Q 016864 228 ADDLIDVIEGSRIYMPCIYVINKIDQITLEE---L-EILD------KLPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 228 ~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~---l-~~l~------~~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
....+|+++|+||+|+..... + +.+. ...+++.+||.++.|++++++.+.+
T Consensus 98 ----------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 98 ----------SLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ----------hhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 001269999999999875322 1 2211 1135789999999999999998865
No 105
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.60 E-value=1.4e-14 Score=124.14 Aligned_cols=151 Identities=22% Similarity=0.173 Sum_probs=95.5
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|++|||||||+++|++........|..+.+.....+.+++ ..+.++||||...... .....++.+|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d 74 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRT-------LTSSYYRGAQ 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhh-------hhHHHhCCCC
Confidence 799999999999999999998754332333333333334445554 5688999999644321 1122457899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|.+++..- +.+..++. .+..+.
T Consensus 75 ~~i~v~d~~~~~s~-~~~~~~~~-----------------------------------------~i~~~~---------- 102 (161)
T cd01863 75 GVILVYDVTRRDTF-TNLETWLN-----------------------------------------ELETYS---------- 102 (161)
T ss_pred EEEEEEECCCHHHH-HhHHHHHH-----------------------------------------HHHHhC----------
Confidence 99999998775421 11111110 000100
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCC----HHHHHHHh--cCCCeeeecccccccHHHHHHHHHHH
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQIT----LEELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~----~~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
.....|.++|+||+|+.. .++...+. ...+++.+||.++.|++++++.+.+.
T Consensus 103 -------------~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 103 -------------TNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred -------------CCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 011369999999999872 22332222 23458999999999999999988764
No 106
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.59 E-value=2e-14 Score=122.79 Aligned_cols=152 Identities=22% Similarity=0.140 Sum_probs=96.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|++++... ...++.|+.+.....+.+++. .+.++||||..... .-....++.+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~~~~ 73 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 73 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchH-------HHHHHHHhcC
Confidence 4899999999999999999997542 344555555544555666664 46789999964321 1111245778
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|..+... .+.+..++. .++.
T Consensus 74 ~~~i~v~~~~~~~s-~~~~~~~~~----------------------------------------~i~~------------ 100 (162)
T cd04138 74 EGFLCVFAINSRKS-FEDIHTYRE----------------------------------------QIKR------------ 100 (162)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHH----------------------------------------HHHH------------
Confidence 99999988876432 111111110 0100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH----HHHHHHh-c-CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL----EELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~----~~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. .....|+++|+||+|+... .+...+. . ..+++.+||+++.|++++++.+.+.+
T Consensus 101 ----------~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 101 ----------VK--DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ----------hc--CCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 00 0112699999999998642 2222222 1 23688999999999999999987643
No 107
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.59 E-value=9.8e-15 Score=125.06 Aligned_cols=148 Identities=22% Similarity=0.226 Sum_probs=95.1
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc----CEEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR----GAKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~----g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
+|+++|.+|+|||||++++++........|..+.+.....+.++ +..+.++||||..... ......++.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~ 74 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD-------AITKAYYRG 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH-------HhHHHHhcC
Confidence 79999999999999999999864332222333344444445554 3578899999964322 112224588
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|+.++.. .+.+.. ++..+
T Consensus 75 ~~~~v~v~d~~~~~s-~~~l~~--------------------------------------------~~~~~--------- 100 (162)
T cd04106 75 AQACILVFSTTDRES-FEAIES--------------------------------------------WKEKV--------- 100 (162)
T ss_pred CCEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHH---------
Confidence 999999999887542 111111 11111
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHH
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
.......|+++|+||+|+... ++...+.. ..+++.+||+++.|++++++.+..
T Consensus 101 -------------~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 101 -------------EAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred -------------HHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 000112699999999998632 23332222 236899999999999999988865
No 108
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.59 E-value=5.9e-15 Score=130.87 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc----------------cccccccceeeeecEEEEEcCEEeeecCcccccccccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS----------------EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG 129 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~----------------~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~ 129 (381)
.+|+++|+.|+|||||+++|++... +.....++|++.....+.+++.++.++||||+...
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~---- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY---- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH----
Confidence 5899999999999999999986411 11125688998877777778899999999998653
Q ss_pred CcchhhhhcccCCcchhHHHHhcCCC
Q 016864 130 KGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 130 ~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.......+..+|++++|+|+..+
T Consensus 79 ---~~~~~~~~~~~D~~ilVvda~~g 101 (195)
T cd01884 79 ---IKNMITGAAQMDGAILVVSATDG 101 (195)
T ss_pred ---HHHHHHHhhhCCEEEEEEECCCC
Confidence 24556677899999999999765
No 109
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.59 E-value=9.2e-15 Score=126.69 Aligned_cols=148 Identities=19% Similarity=0.104 Sum_probs=94.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|.+|||||||+++|+.... ....|.++. ....+.+.+..+.++||||..... ......++.+|+
T Consensus 10 ~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~--~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~a~~ 79 (168)
T cd04149 10 MRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGF--NVETVTYKNVKFNVWDVGGQDKIR-------PLWRHYYTGTQG 79 (168)
T ss_pred cEEEEECcCCCCHHHHHHHHccCCC-ccccCCccc--ceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhccCCE
Confidence 7999999999999999999976432 222232222 223455667899999999975432 111224588999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|++++..- +.+..++ ..++...
T Consensus 80 ii~v~D~t~~~s~-~~~~~~~----------------------------------------~~~~~~~------------ 106 (168)
T cd04149 80 LIFVVDSADRDRI-DEARQEL----------------------------------------HRIINDR------------ 106 (168)
T ss_pred EEEEEeCCchhhH-HHHHHHH----------------------------------------HHHhcCH------------
Confidence 9999999875321 1111111 1111100
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcCC---HHHHHHHhc---C----CCeeeecccccccHHHHHHHHHH
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQIT---LEELEILDK---L----PHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~---~~~l~~l~~---~----~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
.....|+++|+||+|+.. .++++.... . ..++++||++|.|+++++++|.+
T Consensus 107 ------------~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 107 ------------EMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred ------------hhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 001269999999999863 344433221 1 14678999999999999988754
No 110
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.59 E-value=1.6e-14 Score=123.85 Aligned_cols=152 Identities=19% Similarity=0.179 Sum_probs=98.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++++.+.. ....++.|+.+.....+.+++. .+.++||||...... -....++.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 73 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA-------MRDLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccch-------HHHHHhhcC
Confidence 589999999999999999998654 3345566665555556667764 567899999654321 111235789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|.+++.. .+.+..+ +..+
T Consensus 74 ~~~ilv~d~~~~~s-~~~~~~~--------------------------------------------~~~i---------- 98 (163)
T cd04136 74 QGFVLVYSITSQSS-FNDLQDL--------------------------------------------REQI---------- 98 (163)
T ss_pred CEEEEEEECCCHHH-HHHHHHH--------------------------------------------HHHH----------
Confidence 99999999877532 1111111 1110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
... . .....|+++|+||+|+... ++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 99 --------~~~-~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 99 --------LRV-K-DTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred --------HHh-c-CCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 000 0 0012699999999998632 22222221 24689999999999999999987643
No 111
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.58 E-value=8.4e-15 Score=125.11 Aligned_cols=147 Identities=22% Similarity=0.165 Sum_probs=95.8
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchh
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCI 146 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 146 (381)
+|+++|.+|||||||++++++.... ....|.......+.+.+..+.++||||..... ......+..+|++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~~ 70 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV---TTIPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PLWKHYYENTNGI 70 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC---CCCCCcCcceEEEEECCEEEEEEECCCChhhH-------HHHHHHhccCCEE
Confidence 5899999999999999999987621 12223334445567778899999999975432 1122245788999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCC
Q 016864 147 LIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDA 226 (381)
Q Consensus 147 l~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~ 226 (381)
++|+|+..+..- ......+ ..++...
T Consensus 71 i~v~D~~~~~~~-~~~~~~~----------------------------------------~~~~~~~------------- 96 (158)
T cd00878 71 IFVVDSSDRERI-EEAKEEL----------------------------------------HKLLNEE------------- 96 (158)
T ss_pred EEEEECCCHHHH-HHHHHHH----------------------------------------HHHHhCc-------------
Confidence 999999876321 1111111 0111100
Q ss_pred ChhHHHHHHhcccccccEEEEEecCCcCCHH---HHHHH-h------cCCCeeeecccccccHHHHHHHHHH
Q 016864 227 TADDLIDVIEGSRIYMPCIYVINKIDQITLE---ELEIL-D------KLPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 227 t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~---~l~~l-~------~~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
.....|+++|+||+|+.... ++... . ...+++.+||+++.|++++++.+..
T Consensus 97 -----------~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 97 -----------ELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred -----------ccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 01126999999999987532 33221 1 1235889999999999999988754
No 112
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.58 E-value=2.1e-14 Score=123.43 Aligned_cols=150 Identities=22% Similarity=0.180 Sum_probs=91.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|.+|||||||++.+.+........+....+...-.+.+++ ..+.++||||..... ......++.+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 74 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ-------TMHASYYHKAH 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHhCCCC
Confidence 799999999999999999986543211111111122222334444 467799999964422 11122468899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|.+++... +.+. .++..+
T Consensus 75 ~~i~v~d~~~~~s~-~~~~--------------------------------------------~~~~~i----------- 98 (161)
T cd04124 75 ACILVFDVTRKITY-KNLS--------------------------------------------KWYEEL----------- 98 (161)
T ss_pred EEEEEEECCCHHHH-HHHH--------------------------------------------HHHHHH-----------
Confidence 99999998876321 1111 111111
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCHHH--HHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITLEE--LEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~--l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.......|+++|+||+|+..... ...+. ...+++.+||+++.|++++++.+.+..
T Consensus 99 -----------~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 99 -----------REYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred -----------HHhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00011269999999999853211 11121 124688999999999999999988754
No 113
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.58 E-value=1.4e-14 Score=122.67 Aligned_cols=148 Identities=22% Similarity=0.178 Sum_probs=98.0
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc--CEEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR--GAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~--g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|++|||||||+|++++........+.++.+.....+... +..+.++|+||..... ......++++|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d 74 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR-------SITPSYYRGAH 74 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH-------HHHHHHhcCCC
Confidence 79999999999999999999877654444444445554555553 3678899999975432 12233457899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|+.++.. .+.+..+ +..+...
T Consensus 75 ~ii~v~d~~~~~~-~~~~~~~--------------------------------------------~~~~~~~-------- 101 (159)
T cd00154 75 GAILVYDITNRES-FENLDKW--------------------------------------------LKELKEY-------- 101 (159)
T ss_pred EEEEEEECCCHHH-HHHHHHH--------------------------------------------HHHHHHh--------
Confidence 9999999987431 2222111 1111000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHH
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
.....|+++++||+|+.. .+++..+.. ..+++.+||.++.|++++.+.+.
T Consensus 102 -------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 102 -------------APENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred -------------CCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 001269999999999962 223333322 45789999999999999998875
No 114
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=1.5e-14 Score=129.10 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=97.7
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc-C--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR-G--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~-g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
+|+++|.+|||||||++.+++........|....+.....+.++ + ..+.++||||..... ......++++
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~a 74 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG-------GMTRVYYRGA 74 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh-------hhHHHHhCCC
Confidence 79999999999999999998764322222333334444456665 3 467899999964321 1112245899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|.+++.. .+.+..++.. +...+ ...
T Consensus 75 ~~~ilv~D~t~~~s-~~~~~~~~~~-------------------------------------i~~~~---~~~------- 106 (201)
T cd04107 75 VGAIIVFDVTRPST-FEAVLKWKAD-------------------------------------LDSKV---TLP------- 106 (201)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH-------------------------------------HHHhh---ccc-------
Confidence 99999999987642 1111111100 00000 000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcC-----CHHHHHHHh---cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQI-----TLEELEILD---KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~-----~~~~l~~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+|+|+||+|+. ..++++.+. .+.+++.+||+++.|++++++.+.+.+
T Consensus 107 --------------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 107 --------------NGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred --------------CCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 01136999999999986 233444432 224689999999999999999998765
No 115
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.58 E-value=7.7e-15 Score=150.21 Aligned_cols=147 Identities=21% Similarity=0.244 Sum_probs=106.3
Q ss_pred EEEEEcCCCCchHHHHHHHhcccc---cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFS---EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~---~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
+|+++|++|+|||||+++|+|... +....+++|++.....+.+++..+.++||||.... ...+...+.++
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f-------~~~~~~g~~~a 74 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF-------ISNAIAGGGGI 74 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH-------HHHHHhhhccC
Confidence 699999999999999999998542 22335688999888888888899999999997543 24455567889
Q ss_pred chhHHHHhcCCChH-HHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 144 NCILIVLDAIKPIT-HKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 144 d~il~vvd~~~~~~-~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
|++++|+|+.++.. +... .+ .++..+
T Consensus 75 D~aILVVDa~~G~~~qT~e-------------------------------------------hl-~il~~l--------- 101 (581)
T TIGR00475 75 DAALLVVDADEGVMTQTGE-------------------------------------------HL-AVLDLL--------- 101 (581)
T ss_pred CEEEEEEECCCCCcHHHHH-------------------------------------------HH-HHHHHc---------
Confidence 99999999987521 1110 00 111111
Q ss_pred ccCCChhHHHHHHhccccccc-EEEEEecCCcCCHHHH-------HHH-hc-----CCCeeeecccccccHHHHHHHHHH
Q 016864 223 RYDATADDLIDVIEGSRIYMP-CIYVINKIDQITLEEL-------EIL-DK-----LPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p-~i~v~NK~Dl~~~~~l-------~~l-~~-----~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
.+| .|+|+||+|+.+.+.+ ..+ .. ..+++++||.++.|++++.+.+..
T Consensus 102 ------------------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~ 163 (581)
T TIGR00475 102 ------------------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKN 163 (581)
T ss_pred ------------------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHH
Confidence 146 9999999999865532 111 11 257899999999999999988876
Q ss_pred HcC
Q 016864 289 YLN 291 (381)
Q Consensus 289 ~l~ 291 (381)
.+.
T Consensus 164 l~~ 166 (581)
T TIGR00475 164 LLE 166 (581)
T ss_pred HHH
Confidence 654
No 116
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.58 E-value=1.7e-14 Score=126.74 Aligned_cols=152 Identities=24% Similarity=0.245 Sum_probs=94.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEE---cCEEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITY---RGAKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~---~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.+|+++|.+|||||||++++++... +...|..+.+...-.+.. .+..+.++||||..... ......++.
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~ 75 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEF-VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR-------PLWKSYTRC 75 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCc-CCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHH-------HHHHHHhcc
Confidence 6899999999999999999987542 233333222222222322 35789999999964321 111224678
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|++++.. .+.+..++ ..++..
T Consensus 76 ~d~ii~v~D~~~~~~-~~~~~~~~----------------------------------------~~i~~~---------- 104 (183)
T cd04152 76 TDGIVFVVDSVDVER-MEEAKTEL----------------------------------------HKITRF---------- 104 (183)
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH----------------------------------------HHHHhh----------
Confidence 999999999987632 11111111 011100
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCC---HHHHHHHhc---C-----CCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQIT---LEELEILDK---L-----PHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~---~~~l~~l~~---~-----~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. ...+|+++|+||+|+.. .++++.+.. . ..++++||.++.|++++++.+.+.+
T Consensus 105 ------------~~--~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 105 ------------SE--NQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred ------------hh--cCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 00 11269999999999863 233433221 1 2367899999999999999988755
No 117
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.58 E-value=1.4e-14 Score=124.36 Aligned_cols=151 Identities=24% Similarity=0.174 Sum_probs=97.0
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|++|||||||++++.+... ...++.|+.+...-.+.+++ ..+.++||||..+... .....++.+|
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-------~~~~~~~~~~ 73 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHF-VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA-------MRDQYMRTGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC-CcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH-------HHHHHHhhCC
Confidence 799999999999999999997643 23445555554444555555 4677899999654321 1112357889
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
.+++|+|+.++.. .+.+..+.. .+...
T Consensus 74 ~~i~v~d~~~~~s-~~~~~~~~~----------------------------------------~i~~~------------ 100 (164)
T smart00173 74 GFLLVYSITDRQS-FEEIKKFRE----------------------------------------QILRV------------ 100 (164)
T ss_pred EEEEEEECCCHHH-HHHHHHHHH----------------------------------------HHHHh------------
Confidence 9999999877532 111111100 00000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. .....|+++|.||+|+... +....+.+ ..+++.+||+++.|++++++.+.+.+
T Consensus 101 ----------~--~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 101 ----------K--DRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred ----------c--CCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 0 0112699999999998642 22222222 24689999999999999999998765
No 118
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.58 E-value=1.1e-14 Score=140.65 Aligned_cols=162 Identities=17% Similarity=0.231 Sum_probs=129.2
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
++++++.. +...+|+|.||||||||+++|.|...| +.|.+.++|.++.+- +..+....|+++.+
T Consensus 22 ~V~l~v~~--GeIHaLLGENGAGKSTLm~iL~G~~~P-----------~~GeI~v~G~~v~~~---sP~dA~~~GIGMVh 85 (501)
T COG3845 22 DVSLSVKK--GEIHALLGENGAGKSTLMKILFGLYQP-----------DSGEIRVDGKEVRIK---SPRDAIRLGIGMVH 85 (501)
T ss_pred ceeeeecC--CcEEEEeccCCCCHHHHHHHHhCcccC-----------CcceEEECCEEeccC---CHHHHHHcCCcEEe
Confidence 45555555 489999999999999999999999999 999999999999875 45566678999999
Q ss_pred hhhcccCCcchhHHHHhcCCC--------hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeec
Q 016864 135 QVISTARTCNCILIVLDAIKP--------ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~~~~--------~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
|.+.+.+..++.-.++=+..+ ....+.+.+..+.||+ +++.++..||.|++||..|- +++|
T Consensus 86 QHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILD 165 (501)
T COG3845 86 QHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILD 165 (501)
T ss_pred eccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEc
Confidence 999999999998777654432 2445667788888998 89999999999999998774 7788
Q ss_pred ccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCc
Q 016864 196 VTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQ 253 (381)
Q Consensus 196 ~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl 253 (381)
||++-+++++++.++.-+. .+. ...+.+|++.+|++.
T Consensus 166 EPTaVLTP~E~~~lf~~l~-------------------~l~--~~G~tIi~ITHKL~E 202 (501)
T COG3845 166 EPTAVLTPQEADELFEILR-------------------RLA--AEGKTIIFITHKLKE 202 (501)
T ss_pred CCcccCCHHHHHHHHHHHH-------------------HHH--HCCCEEEEEeccHHH
Confidence 8888888888877665432 122 223688888899873
No 119
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.58 E-value=9.8e-15 Score=129.50 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=62.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc-cccc---------------ccccceeeeecEEEEEcCEEeeecCcccccccccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF-SEVA---------------SYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG 129 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~-~~~~---------------~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~ 129 (381)
++|+++|.+|+|||||+++|++.. .... ...++|.......+.+++..+.++||||..+..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG--- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence 589999999999999999998632 1111 125667777777788888999999999986532
Q ss_pred CcchhhhhcccCCcchhHHHHhcCCC
Q 016864 130 KGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 130 ~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
......++.+|++++|+|+.+.
T Consensus 80 ----~~~~~~~~~~d~~ilV~d~~~~ 101 (194)
T cd01891 80 ----GEVERVLSMVDGVLLLVDASEG 101 (194)
T ss_pred ----HHHHHHHHhcCEEEEEEECCCC
Confidence 2333456889999999999764
No 120
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.57 E-value=2.2e-14 Score=123.01 Aligned_cols=152 Identities=18% Similarity=0.114 Sum_probs=95.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|++++........|.+..+...-.+.+++ ..+.++|+||...... .....++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~ 74 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS-------LAPMYYRGA 74 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH-------HHHHHhccC
Confidence 5899999999999999999998764322222222122233444554 5678899999643221 111245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++.. .+.... ++..+..
T Consensus 75 ~~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~~~~-------- 101 (163)
T cd01860 75 AAAIVVYDITSEES-FEKAKS--------------------------------------------WVKELQR-------- 101 (163)
T ss_pred CEEEEEEECcCHHH-HHHHHH--------------------------------------------HHHHHHH--------
Confidence 99999999987532 111111 1111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
......|+++++||+|+.. .++...+. ....++.+||.++.|++++++.+.+.+
T Consensus 102 -------------~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 102 -------------NASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred -------------hCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 0001269999999999873 22332222 124589999999999999999998764
No 121
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.57 E-value=3.7e-14 Score=122.44 Aligned_cols=151 Identities=21% Similarity=0.187 Sum_probs=99.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||++++++........+..+.+.....+.+.+. .+.++|+||..... ......+..+
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~ 80 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR-------SITQSYYRSA 80 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhcCC
Confidence 69999999999999999999865544334455555666677778774 46789999964432 1222356889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|.+++.. .+.+...+ ..+..+
T Consensus 81 d~~i~v~d~~~~~s-~~~~~~~~-----------------------------------------~~l~~~---------- 108 (169)
T cd04114 81 NALILTYDITCEES-FRCLPEWL-----------------------------------------REIEQY---------- 108 (169)
T ss_pred CEEEEEEECcCHHH-HHHHHHHH-----------------------------------------HHHHHh----------
Confidence 99999999876532 11111111 001110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHHH-----HHHHhc--CCCeeeecccccccHHHHHHHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-----LEILDK--LPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-----l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
.. ...|.++|+||+|+..... .+.+.. ...++.+||+++.|++++++.+.+.
T Consensus 109 ------------~~--~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 109 ------------AN--NKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred ------------CC--CCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 00 1268999999999863221 122211 2468899999999999999998764
No 122
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.57 E-value=2.3e-14 Score=122.81 Aligned_cols=151 Identities=20% Similarity=0.117 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+++|++........+..+.+...-.+.+++ ..+.++||||..... ......++.+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~~ 73 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFR-------SVTRSYYRGA 73 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHH-------HhHHHHhcCC
Confidence 3799999999999999999987764433334444444444555555 467899999975432 1122245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|..++... ..+..+ +..+..
T Consensus 74 ~~~i~v~d~~~~~s~-~~~~~~--------------------------------------------~~~~~~-------- 100 (161)
T cd04113 74 AGALLVYDITNRTSF-EALPTW--------------------------------------------LSDARA-------- 100 (161)
T ss_pred CEEEEEEECCCHHHH-HHHHHH--------------------------------------------HHHHHH--------
Confidence 999999999876421 112111 111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
+. ....|+++|+||+|+... ++...+. ....++.+||.++.|++++++.+.+.
T Consensus 101 -----------~~--~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 101 -----------LA--SPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred -----------hC--CCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 00 012699999999998632 2222221 12468999999999999999998763
No 123
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.57 E-value=1.7e-14 Score=127.61 Aligned_cols=154 Identities=21% Similarity=0.184 Sum_probs=97.4
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|.+|||||||++.+++.. ....++.|+.+.....+.+++. .+.++||||...... -....++.+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-FVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA-------LRDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHHHhCC
Confidence 48999999999999999998543 2344666665554455566665 478899999644321 1112457899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|.+++.. .+.+..++ ..+.
T Consensus 73 ~~ilv~d~~~~~s-~~~~~~~~--------------------------------------------~~i~---------- 97 (190)
T cd04144 73 GFILVYSITSRST-FERVERFR--------------------------------------------EQIQ---------- 97 (190)
T ss_pred EEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHHH----------
Confidence 9999999877532 11111111 1100
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
..........|+|+|+||+|+.. ..+...+.. ..+++.+||+++.|++++++.+.+.+.
T Consensus 98 --------~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 98 --------RVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred --------HHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 00000001269999999999853 222222211 235899999999999999999987653
No 124
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.3e-14 Score=132.74 Aligned_cols=145 Identities=19% Similarity=0.247 Sum_probs=115.3
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
++++++.. +.+.|+||++|||||||++++.+...| +.|.+.++|..+.-++-.+++.. ...+++..
T Consensus 24 ~vsL~I~~--GeI~GIIG~SGAGKSTLiR~iN~Le~P-----------tsG~v~v~G~di~~l~~~~Lr~~-R~~IGMIF 89 (339)
T COG1135 24 DVSLEIPK--GEIFGIIGYSGAGKSTLLRLINLLERP-----------TSGSVFVDGQDLTALSEAELRQL-RQKIGMIF 89 (339)
T ss_pred cceEEEcC--CcEEEEEcCCCCcHHHHHHHHhccCCC-----------CCceEEEcCEecccCChHHHHHH-HhhccEEe
Confidence 45555554 489999999999999999999999989 99999999988888777776653 34567777
Q ss_pred hhhcccCCcchhHHHH-----hcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIVL-----DAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv-----d~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|...++...++.-.|. ......+-.+++.+.|+.+|+ ..+.+|..||+|+|||.+|+ +..||++
T Consensus 90 QhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaT 169 (339)
T COG1135 90 QHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEAT 169 (339)
T ss_pred ccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCcc
Confidence 7777777666643331 222224557788999999999 78899999999999999997 6668999
Q ss_pred CCCCHHHHHHHHHHh
Q 016864 199 TNLDLDTVKAICSEY 213 (381)
Q Consensus 199 ~~l~~~~v~~~l~~~ 213 (381)
+.+|++....+|+.+
T Consensus 170 SALDP~TT~sIL~LL 184 (339)
T COG1135 170 SALDPETTQSILELL 184 (339)
T ss_pred ccCChHHHHHHHHHH
Confidence 999999888877754
No 125
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.57 E-value=1.8e-14 Score=122.78 Aligned_cols=150 Identities=21% Similarity=0.167 Sum_probs=101.3
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|++|||||||++++++.. ..+.++.++.+.....+.+++ ..+.++|+||..... ......+..+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS-------AMRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHHhcCC
Confidence 58999999999999999999866 556677777777777777764 568899999975422 11223457889
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|..++... ..+...+ ..++..
T Consensus 73 ~~i~v~d~~~~~s~-~~~~~~~----------------------------------------~~~~~~------------ 99 (160)
T cd00876 73 GFILVYSITDRESF-EEIKGYR----------------------------------------EQILRV------------ 99 (160)
T ss_pred EEEEEEECCCHHHH-HHHHHHH----------------------------------------HHHHHh------------
Confidence 99999998775321 1111110 000000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHH-hcC-CCeeeecccccccHHHHHHHHHHH
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEIL-DKL-PHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l-~~~-~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
.. ....|+++|+||+|+... ++...+ ..+ .+++.+||.++.|++++++.+.+.
T Consensus 100 ----------~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 100 ----------KD--DEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred ----------cC--CCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 00 013699999999998742 222222 222 478999999999999999998764
No 126
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.56 E-value=4e-14 Score=121.76 Aligned_cols=152 Identities=18% Similarity=0.141 Sum_probs=98.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+++++... .+..++.|+.+...-.+.+++. .+.++||||...... -....++.+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 73 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI-FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA-------MRDLYMKNG 73 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh-------HHHHHHhhC
Confidence 589999999999999999998542 3355666766655556677664 456899999744321 111135788
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|.+++.. .+.+..++. .++...
T Consensus 74 d~~ilv~d~~~~~s-~~~~~~~~~----------------------------------------~i~~~~---------- 102 (164)
T cd04175 74 QGFVLVYSITAQST-FNDLQDLRE----------------------------------------QILRVK---------- 102 (164)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHH----------------------------------------HHHHhc----------
Confidence 99999999876532 111111110 111000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHh-c-CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+++|.||+|+.. .++.+.+. . ..+++.+||+++.|+++++.++.+.+
T Consensus 103 --------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 103 --------------DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred --------------CCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 011269999999999863 22333332 1 24689999999999999999998754
No 127
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.56 E-value=1.3e-14 Score=124.05 Aligned_cols=147 Identities=23% Similarity=0.173 Sum_probs=91.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc-CEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR-GAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~-g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
+|+++|++|||||||++++++.... ...| |.......+.++ +..+.++||||..... ......+..+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~~~ 70 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIP--TVGFNVEMLQLEKHLSLTVWDVGGQEKMR-------TVWKCYLENTDG 70 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccC--ccCcceEEEEeCCceEEEEEECCCCHhHH-------HHHHHHhccCCE
Confidence 5899999999999999999986532 2222 222233445543 4689999999975421 112234678999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|++++.. ...+...+ ..++...
T Consensus 71 iv~v~D~~~~~~-~~~~~~~~----------------------------------------~~~~~~~------------ 97 (160)
T cd04156 71 LVYVVDSSDEAR-LDESQKEL----------------------------------------KHILKNE------------ 97 (160)
T ss_pred EEEEEECCcHHH-HHHHHHHH----------------------------------------HHHHhch------------
Confidence 999999987631 11111111 1111100
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcCC---HHHHHHH---hcCC-----CeeeecccccccHHHHHHHHHH
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQIT---LEELEIL---DKLP-----HYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~---~~~l~~l---~~~~-----~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
.....|+++|+||+|+.. .+++... ..+. +++++||+++.|++++++.|..
T Consensus 98 ------------~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 98 ------------HIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ------------hhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 001269999999999863 3333221 1221 3788999999999999988753
No 128
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.56 E-value=7.2e-15 Score=141.17 Aligned_cols=61 Identities=36% Similarity=0.614 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGA 126 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~ 126 (381)
.++.|+|+||+|||||+|.++..+..+.+|+|||.....|.+.++-..++++||||+.+..
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~p 229 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRP 229 (620)
T ss_pred CeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcc
Confidence 7999999999999999999999999999999999999999999999999999999998754
No 129
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.56 E-value=2.9e-14 Score=126.91 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=100.1
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|.+|||||||++++++... ...++.|+.+.....+.+++ ..+.++||||...... .....+..+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~~~~~~~~ad 72 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF-EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA-------MRKLSIQNSD 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH-------HHHHHhhcCC
Confidence 589999999999999999987643 24455666555556677777 5778999999754321 1112457899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|++++.. .+.+..+ +..
T Consensus 73 ~vilv~d~~~~~s-~~~~~~~--------------------------------------------~~~------------ 95 (198)
T cd04147 73 AFALVYAVDDPES-FEEVERL--------------------------------------------REE------------ 95 (198)
T ss_pred EEEEEEECCCHHH-HHHHHHH--------------------------------------------HHH------------
Confidence 9999999987532 1111111 111
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH-H-----HHH-HHh-cC-CCeeeecccccccHHHHHHHHHHHcC
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL-E-----ELE-ILD-KL-PHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-~-----~l~-~l~-~~-~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+.+... ...+|+|+|+||+|+... . ... ... .+ .+++.+||+++.|++++++.+.+.+.
T Consensus 96 ------i~~~~~--~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 96 ------ILEVKE--DKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred ------HHHhcC--CCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 000000 012699999999998642 1 111 111 22 46788999999999999999988765
No 130
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.56 E-value=3e-14 Score=124.29 Aligned_cols=150 Identities=21% Similarity=0.109 Sum_probs=94.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|.+|||||||++.+..... ....| |+......+.+.+..+.++||||..... ......++++|+
T Consensus 14 ~ki~l~G~~~~GKTsL~~~~~~~~~-~~~~~--t~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~ad~ 83 (175)
T smart00177 14 MRILMVGLDAAGKTTILYKLKLGES-VTTIP--TIGFNVETVTYKNISFTVWDVGGQDKIR-------PLWRHYYTNTQG 83 (175)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCC-CCcCC--ccccceEEEEECCEEEEEEECCCChhhH-------HHHHHHhCCCCE
Confidence 7999999999999999999953221 12222 3323333456678899999999974431 111224689999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|.+++.. .+...+.+ ..++...
T Consensus 84 ii~v~D~t~~~s-~~~~~~~l----------------------------------------~~~~~~~------------ 110 (175)
T smart00177 84 LIFVVDSNDRDR-IDEAREEL----------------------------------------HRMLNED------------ 110 (175)
T ss_pred EEEEEECCCHHH-HHHHHHHH----------------------------------------HHHhhCH------------
Confidence 999999987632 11111111 1111100
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcCCH---HHHHHHhcC-------CCeeeecccccccHHHHHHHHHHHc
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQITL---EELEILDKL-------PHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~~l~~~-------~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+++|+||+|+... +++...... ..++++||++|.|++++++++.+.+
T Consensus 111 ------------~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 111 ------------ELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred ------------hhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0012699999999998632 333221111 1255799999999999999987754
No 131
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.56 E-value=3.4e-14 Score=124.66 Aligned_cols=150 Identities=17% Similarity=0.074 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|.+|||||||++.++..... . + ..|.......+.+.+..+.++||||..... ......++++|+
T Consensus 18 ~ki~ivG~~~~GKTsl~~~l~~~~~~-~-~-~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~-------~~~~~~~~~a~~ 87 (181)
T PLN00223 18 MRILMVGLDAAGKTTILYKLKLGEIV-T-T-IPTIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQG 87 (181)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCc-c-c-cCCcceeEEEEEECCEEEEEEECCCCHHHH-------HHHHHHhccCCE
Confidence 69999999999999999999753321 2 2 223333334566778899999999964321 111224688999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|++++..- +.+..++ ..++...
T Consensus 88 iI~V~D~s~~~s~-~~~~~~l----------------------------------------~~~l~~~------------ 114 (181)
T PLN00223 88 LIFVVDSNDRDRV-VEARDEL----------------------------------------HRMLNED------------ 114 (181)
T ss_pred EEEEEeCCcHHHH-HHHHHHH----------------------------------------HHHhcCH------------
Confidence 9999999875321 1111111 1111100
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcCCH---HHHHHHhcCC-------CeeeecccccccHHHHHHHHHHHc
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQITL---EELEILDKLP-------HYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~~l~~~~-------~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+++|+||+|+... +++....... .++.+||++|+|++++++++.+.+
T Consensus 115 ------------~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 115 ------------ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred ------------hhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 0012699999999998743 3333222221 244689999999999999998765
No 132
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.56 E-value=1.5e-14 Score=123.97 Aligned_cols=149 Identities=21% Similarity=0.217 Sum_probs=90.9
Q ss_pred EEEEcCCCCchHHHHHHHh--cccccccccccceeeeecEEEEEcCEEeeecCcccccccccCC------Ccchhhhhcc
Q 016864 68 VGLVGFPSVGKSTLLNKLT--GTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG------KGRGRQVIST 139 (381)
Q Consensus 68 i~lvG~~naGKSTLln~L~--g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~------~~~~~~~~~~ 139 (381)
|+++|++|||||||+|.|+ +...+.++.+++|.+... +.++ ..+.++||||+....... .....+++..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999 444566777777776543 2333 388999999975431100 0011122222
Q ss_pred cCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCc
Q 016864 140 ARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNAD 219 (381)
Q Consensus 140 ~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~ 219 (381)
....+.+++++|...+..... ..+..++..
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~-------------------------------------------~~~~~~l~~------- 108 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEID-------------------------------------------LEMLDWLEE------- 108 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhH-------------------------------------------HHHHHHHHH-------
Confidence 233455556666544311100 011111111
Q ss_pred cccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH-------H-HH---hcCCCeeeecccccccHHHHHHHHHH
Q 016864 220 ITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL-------E-IL---DKLPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 220 ~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l-------~-~l---~~~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
. ..|+++|+||+|+.+.++. . .+ ....+++++||+++.|++++.+.+.+
T Consensus 109 ------------------~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 109 ------------------L--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEK 168 (170)
T ss_pred ------------------c--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHH
Confidence 1 1599999999999754332 1 11 22357889999999999999999876
Q ss_pred H
Q 016864 289 Y 289 (381)
Q Consensus 289 ~ 289 (381)
.
T Consensus 169 ~ 169 (170)
T cd01876 169 W 169 (170)
T ss_pred h
Confidence 4
No 133
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.55 E-value=4.2e-14 Score=121.13 Aligned_cols=151 Identities=23% Similarity=0.180 Sum_probs=97.6
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|++|||||||++++++... ..++.+++.+.....+.+++ ..+.++||||..... ......++.+|
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~ 73 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA-------AIRDNYHRSGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-------HHHHHHhhcCC
Confidence 799999999999999999987542 34566666655555556654 468889999965432 11222457888
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
.+++|+|..++.. ...+...+. .++.
T Consensus 74 ~~i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~------------- 99 (164)
T cd04139 74 GFLLVFSITDMES-FTATAEFRE----------------------------------------QILR------------- 99 (164)
T ss_pred EEEEEEECCCHHH-HHHHHHHHH----------------------------------------HHHH-------------
Confidence 8889988876532 111111110 0000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh-c-CCCeeeecccccccHHHHHHHHHHHc
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
... ...+|+++|+||+|+... +....+. . ..+++.+||.++.|++++++.+.+.+
T Consensus 100 ---------~~~--~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 100 ---------VKD--DDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred ---------hcC--CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 000 113799999999998751 1122222 1 24689999999999999999998765
No 134
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.55 E-value=4.6e-14 Score=123.27 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=95.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc------------CEEeeecCcccccccccCCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR------------GAKIQLLDLPGIIEGAKDGKGRG 133 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~------------g~~i~l~DtpG~~~~~~~~~~~~ 133 (381)
.+|+++|++|||||||++++++........|..+.+.....+.++ ...+.++||||.....
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------- 77 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFR------- 77 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHH-------
Confidence 689999999999999999998764332222222233333334443 2578899999964422
Q ss_pred hhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHh
Q 016864 134 RQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEY 213 (381)
Q Consensus 134 ~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~ 213 (381)
......++++|++++|+|+.++.. ...+.. ++..+
T Consensus 78 ~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~i 112 (180)
T cd04127 78 SLTTAFFRDAMGFLLIFDLTNEQS-FLNVRN--------------------------------------------WMSQL 112 (180)
T ss_pred HHHHHHhCCCCEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHH
Confidence 112224688999999999987532 111211 11111
Q ss_pred cccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHH
Q 016864 214 RIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKI 286 (381)
Q Consensus 214 ~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i 286 (381)
.. .. .....|+++|.||+|+... ++...+.. ..+++.+||+++.|++++++.+
T Consensus 113 ~~------------------~~--~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l 172 (180)
T cd04127 113 QT------------------HA--YCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERL 172 (180)
T ss_pred HH------------------hc--CCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 00 00 0012589999999998632 23333321 2367999999999999999998
Q ss_pred HHHc
Q 016864 287 WEYL 290 (381)
Q Consensus 287 ~~~l 290 (381)
.+.+
T Consensus 173 ~~~~ 176 (180)
T cd04127 173 LDLV 176 (180)
T ss_pred HHHH
Confidence 7643
No 135
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.55 E-value=1.6e-14 Score=150.34 Aligned_cols=166 Identities=19% Similarity=0.239 Sum_probs=107.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+.+++|+|+||||||||+++|+|...| ..|.+.+ |..+. .|++.+...
T Consensus 337 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----------~~G~i~~-~~~~~----i~y~~q~~~-------- 392 (635)
T PRK11147 337 DFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-----------DSGRIHC-GTKLE----VAYFDQHRA-------- 392 (635)
T ss_pred CcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEE-CCCcE----EEEEeCccc--------
Confidence 34444445589999999999999999999998777 7888887 33221 122221100
Q ss_pred hcccCCcchhHHHHhcC---CChHHHHHHHHHHHhccc---ccccCcCcccceeeccccceeeecccCCCCCHHHHHHHH
Q 016864 137 ISTARTCNCILIVLDAI---KPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAIC 210 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~---~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l 210 (381)
......++.-.+.... ........+...|..+++ ..++++..||+|+++|..+
T Consensus 393 -~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~l-------------------- 451 (635)
T PRK11147 393 -ELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLL-------------------- 451 (635)
T ss_pred -ccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHH--------------------
Confidence 0112222322222111 001113456778888888 3678899999999999443
Q ss_pred HHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHH-HhcCCCeeeecccccccHHHHHHHHHH
Q 016864 211 SEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEI-LDKLPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 211 ~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~-l~~~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
....+.+++++++|||| |.+|..+.+.+.. +..+.++|++++|+...++.+++.++.
T Consensus 452 a~al~~~p~lLlLDEPt---------------------~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~ 509 (635)
T PRK11147 452 ARLFLKPSNLLILDEPT---------------------NDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWI 509 (635)
T ss_pred HHHHhcCCCEEEEcCCC---------------------CCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEE
Confidence 33345567888888888 8888877766543 445567888888888888777766554
No 136
>PRK12739 elongation factor G; Reviewed
Probab=99.55 E-value=1.1e-14 Score=152.60 Aligned_cols=111 Identities=19% Similarity=0.332 Sum_probs=81.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhc---cccc---cc------------ccccceeeeecEEEEEcCEEeeecCcccccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTG---TFSE---VA------------SYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGA 126 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g---~~~~---~~------------~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~ 126 (381)
..+|+++|++|+|||||+++|+. .... +. ..+++|++.....+.|++.++.++||||+.+..
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~ 87 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT 87 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence 46899999999999999999953 2221 12 256899999999999999999999999986632
Q ss_pred cCCCcchhhhhcccCCcchhHHHHhcCCC-hHHHHHHHHHHHhcccccccCcCcccceeecc
Q 016864 127 KDGKGRGRQVISTARTCNCILIVLDAIKP-ITHKRLIEKELEGFGIRLNKQPPNLTFRKKDK 187 (381)
Q Consensus 127 ~~~~~~~~~~~~~~~~~d~il~vvd~~~~-~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r 187 (381)
.+....++.+|++++|+|+..+ ..+.+.+...+...++ +..+..++.++
T Consensus 88 -------~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~-----p~iv~iNK~D~ 137 (691)
T PRK12739 88 -------IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGV-----PRIVFVNKMDR 137 (691)
T ss_pred -------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCC-----CEEEEEECCCC
Confidence 3556667889999999999876 3334445554544443 33455555555
No 137
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.55 E-value=4.9e-14 Score=122.26 Aligned_cols=150 Identities=18% Similarity=0.170 Sum_probs=97.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceee-eecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLT-CIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~-~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.+|+++|.+|||||||++++++....+..+.+|+.+ .....+.++| ..+.++|++|...... .....++.
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~~~~ 77 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL-------LNDAELAA 77 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc-------cchhhhhc
Confidence 789999999999999999999865443556555543 2334566666 4567889988644321 11123488
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|++++.. .+.+. .++..+.
T Consensus 78 ~d~~llv~d~~~~~s-~~~~~--------------------------------------------~~~~~~~-------- 104 (169)
T cd01892 78 CDVACLVYDSSDPKS-FSYCA--------------------------------------------EVYKKYF-------- 104 (169)
T ss_pred CCEEEEEEeCCCHHH-HHHHH--------------------------------------------HHHHHhc--------
Confidence 999999999987632 11111 1111110
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCHH-----HHHHHh---cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-----ELEILD---KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-----~l~~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. ....|+++|+||+|+.... +.+.+. .....+.+||.++.|++++++.+.+.+
T Consensus 105 --------------~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 105 --------------M-LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred --------------c-CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 0 0126999999999986321 122222 223468999999999999999988754
No 138
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.55 E-value=7.6e-14 Score=119.13 Aligned_cols=150 Identities=18% Similarity=0.125 Sum_probs=95.5
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|++|+|||||+|++.+........+.++.+.....+.+.+. .+.++|+||...... .....+..+|
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~ 74 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA-------LGPIYYRDAD 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH-------hhHHHhccCC
Confidence 7999999999999999999976543333333334444555665553 678999999643221 1111347899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|.+++..- +.+.. ++..+
T Consensus 75 ~~i~v~d~~~~~s~-~~~~~--------------------------------------------~~~~i----------- 98 (162)
T cd04123 75 GAILVYDITDADSF-QKVKK--------------------------------------------WIKEL----------- 98 (162)
T ss_pred EEEEEEECCCHHHH-HHHHH--------------------------------------------HHHHH-----------
Confidence 99999998776321 11111 11110
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHH
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
..... ..+|+++|+||+|+... +..+.+.. ...++.+||+++.|++++++.+.+.
T Consensus 99 -------~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 99 -------KQMRG---NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred -------HHhCC---CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 00000 02699999999998732 22332221 3457899999999999999998764
No 139
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.55 E-value=4.4e-14 Score=124.98 Aligned_cols=150 Identities=16% Similarity=0.135 Sum_probs=95.8
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeee-ecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTC-IPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~-~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
+|+++|.+|||||||++++++.....+++..|+... ....+.++|. .+.++||||....... . ...+..+
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----~--~~~~~~~ 74 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAM-----S--RIYYRGA 74 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhh-----h--HhhcCCC
Confidence 799999999999999999997654434455444332 2334666665 4558999996432210 1 1235789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|..++.. .+.+. .++..+.
T Consensus 75 d~iilv~d~~~~~s-~~~~~--------------------------------------------~~~~~i~--------- 100 (193)
T cd04118 75 KAAIVCYDLTDSSS-FERAK--------------------------------------------FWVKELQ--------- 100 (193)
T ss_pred CEEEEEEECCCHHH-HHHHH--------------------------------------------HHHHHHH---------
Confidence 99999999877532 11111 1111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH---------HHHHHh-c-CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE---------ELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~---------~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
......|+++|.||+|+.... ++..+. . ..+++.+||.++.|+++|++.+.+.+
T Consensus 101 -------------~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 101 -------------NLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred -------------hcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000126999999999986321 222221 1 24578999999999999999998765
No 140
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.55 E-value=1.2e-14 Score=144.39 Aligned_cols=82 Identities=18% Similarity=0.226 Sum_probs=65.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc-------------------------cc------cccceeeeecEEEEEcCEEe
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV-------------------------AS------YEFTTLTCIPGVITYRGAKI 114 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~-------------------------~~------~~~tT~~~~~g~i~~~g~~i 114 (381)
.+|+++|++|+|||||+++|++....+ .+ .+++|+|.....+.+++..+
T Consensus 7 ~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~~i 86 (425)
T PRK12317 7 LNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKYYF 86 (425)
T ss_pred EEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCeEE
Confidence 789999999999999999997443211 11 58999999999999999999
Q ss_pred eecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCC
Q 016864 115 QLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIK 154 (381)
Q Consensus 115 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~ 154 (381)
.++||||..+.. ..+...+..+|++++|+|+.+
T Consensus 87 ~liDtpG~~~~~-------~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 87 TIVDCPGHRDFV-------KNMITGASQADAAVLVVAADD 119 (425)
T ss_pred EEEECCCcccch-------hhHhhchhcCCEEEEEEEccc
Confidence 999999974432 233445678999999999976
No 141
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.55 E-value=2.1e-14 Score=127.71 Aligned_cols=90 Identities=22% Similarity=0.257 Sum_probs=67.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccc--cccceeeeecEEEEEcCEEeeecCcccccccccCCCc----chhhhhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVAS--YEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG----RGRQVIST 139 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~--~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~----~~~~~~~~ 139 (381)
.+|+|+|.||||||||+|+|+|.....+. .+++|.++..+...++|..+.++||||+.+....... ........
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 37999999999999999999998754433 5688999999998999999999999999875321111 11122223
Q ss_pred cCCcchhHHHHhcCCC
Q 016864 140 ARTCNCILIVLDAIKP 155 (381)
Q Consensus 140 ~~~~d~il~vvd~~~~ 155 (381)
.+..|++++|+++...
T Consensus 81 ~~g~~~illVi~~~~~ 96 (196)
T cd01852 81 APGPHAFLLVVPLGRF 96 (196)
T ss_pred CCCCEEEEEEEECCCc
Confidence 4678899999987663
No 142
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.55 E-value=5.8e-14 Score=122.72 Aligned_cols=153 Identities=22% Similarity=0.224 Sum_probs=98.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||++.+++... +..++.|+.+.....+.+++ ..+.++||||..+... ........+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~ 73 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI-------LPQKYSIGI 73 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHH-------HHHHHHhhC
Confidence 5899999999999999999997653 34444555544455566665 4568999999754321 111234678
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
+.+++++|.++... .+.+..++ ..++....
T Consensus 74 ~~~i~v~d~~~~~~-~~~~~~~~----------------------------------------~~~~~~~~--------- 103 (180)
T cd04137 74 HGYILVYSVTSRKS-FEVVKVIY----------------------------------------DKILDMLG--------- 103 (180)
T ss_pred CEEEEEEECCCHHH-HHHHHHHH----------------------------------------HHHHHhcC---------
Confidence 88888888876431 11111111 11111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh-cC-CCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD-KL-PHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~-~~-~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
....|.|+|+||+|+... ++...+. .+ .+++.+||+++.|+++++.++.+.+.
T Consensus 104 ---------------~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 104 ---------------KESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred ---------------CCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 112699999999998632 2222222 22 36889999999999999999988665
No 143
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.54 E-value=2.7e-14 Score=140.41 Aligned_cols=193 Identities=17% Similarity=0.213 Sum_probs=144.7
Q ss_pred CCCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcch
Q 016864 54 GGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRG 133 (381)
Q Consensus 54 ~~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~ 133 (381)
.+++|++.. | ..++|+|.||||||||++.|+|...| +.|.+.++|.++.+. +..+....|+...
T Consensus 25 ~~v~l~v~~-G-EV~aL~GeNGAGKSTLmKiLsGv~~p-----------~~G~I~~~G~~~~~~---sp~~A~~~GI~~V 88 (500)
T COG1129 25 DGVSLTVRP-G-EVHALLGENGAGKSTLMKILSGVYPP-----------DSGEILIDGKPVAFS---SPRDALAAGIATV 88 (500)
T ss_pred ccceeEEeC-c-eEEEEecCCCCCHHHHHHHHhCcccC-----------CCceEEECCEEccCC---CHHHHHhCCcEEE
Confidence 356666665 4 89999999999999999999999988 999999999998875 4445566788889
Q ss_pred hhhhcccCCcchhHHHHhcCCC---------hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------ee
Q 016864 134 RQVISTARTCNCILIVLDAIKP---------ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 134 ~~~~~~~~~~d~il~vvd~~~~---------~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
+|.++++++.++...+.=...| ....+.....|..+++ .+..++..||++++|...|+ ++
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllI 168 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLI 168 (500)
T ss_pred eechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999997766533322 2234455667777766 58889999999999999887 88
Q ss_pred ecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHH------hcCCC
Q 016864 194 STVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEIL------DKLPH 267 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l------~~~~~ 267 (381)
+|||++.|+..++..++.- +..++.. ...+|++.+++|.+ -.+ .....
T Consensus 169 lDEPTaaLt~~E~~~Lf~~-------------------ir~Lk~~--Gv~ii~ISHrl~Ei-----~~i~DritVlRDG~ 222 (500)
T COG1129 169 LDEPTAALTVKETERLFDL-------------------IRRLKAQ--GVAIIYISHRLDEV-----FEIADRITVLRDGR 222 (500)
T ss_pred EcCCcccCCHHHHHHHHHH-------------------HHHHHhC--CCEEEEEcCcHHHH-----HHhcCEEEEEeCCE
Confidence 8999999999988877663 3333332 36899999998732 222 12334
Q ss_pred eeeecc-cccccHHHHHHHHHH
Q 016864 268 YCPVSA-HLEWNLDGLLEKIWE 288 (381)
Q Consensus 268 ~v~vSa-~~~~gl~~L~~~i~~ 288 (381)
++.... ......+++.+.|..
T Consensus 223 ~v~~~~~~~~~~~~~lv~~MvG 244 (500)
T COG1129 223 VVGTRPTAAETSEDELVRLMVG 244 (500)
T ss_pred EeeecccccCCCHHHHHHHhhC
Confidence 444444 357777888888875
No 144
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.54 E-value=5.9e-14 Score=125.07 Aligned_cols=151 Identities=18% Similarity=0.124 Sum_probs=95.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||++.+.+........|..+.+...-.+.++| ..+.++||||..... ......++.+
T Consensus 7 ~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~a 79 (199)
T cd04110 7 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR-------TITSTYYRGT 79 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH-------HHHHHHhCCC
Confidence 6999999999999999999987643222222222333334455555 467899999964321 1122245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++.. .+.+.. ++..+
T Consensus 80 ~~iilv~D~~~~~s-~~~~~~--------------------------------------------~~~~i---------- 104 (199)
T cd04110 80 HGVIVVYDVTNGES-FVNVKR--------------------------------------------WLQEI---------- 104 (199)
T ss_pred cEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHH----------
Confidence 99999999987632 111111 11111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh-c-CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.......|.++|.||+|+... ++...+. . ...++.+||.++.|++++++.+...+
T Consensus 105 ------------~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 105 ------------EQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred ------------HHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 000112599999999998642 2222221 1 24578999999999999999987754
No 145
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.54 E-value=4.3e-14 Score=122.12 Aligned_cols=83 Identities=24% Similarity=0.253 Sum_probs=55.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+++|++..... .+..++.+.....+..++ ..+.++||||..+... ... ..++.+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~-----~~~--~~~~~~ 72 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPT-EYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR-----LRP--LSYPNT 72 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-----cch--hhcCCC
Confidence 379999999999999999999875432 222333333333344443 4688999999765321 011 134789
Q ss_pred chhHHHHhcCCCh
Q 016864 144 NCILIVLDAIKPI 156 (381)
Q Consensus 144 d~il~vvd~~~~~ 156 (381)
|++++|+|..++.
T Consensus 73 ~~~i~v~d~~~~~ 85 (171)
T cd00157 73 DVFLICFSVDSPS 85 (171)
T ss_pred CEEEEEEECCCHH
Confidence 9999999998753
No 146
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.54 E-value=6.3e-14 Score=120.88 Aligned_cols=151 Identities=21% Similarity=0.126 Sum_probs=95.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeee-ecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTC-IPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~-~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.+|+++|++|||||||++.+++... ...++.|+... ..-.+.+++. .+.++||||..... ......+++
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 74 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR-------AVTRSYYRG 74 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhcC
Confidence 5899999999999999999987632 23444443322 2223455554 67899999964432 112234689
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|.+++.. .+.+..+ +.....
T Consensus 75 ~~~~ilv~d~~~~~s-~~~~~~~--------------------------------------------~~~~~~------- 102 (166)
T cd04122 75 AAGALMVYDITRRST-YNHLSSW--------------------------------------------LTDARN------- 102 (166)
T ss_pred CCEEEEEEECCCHHH-HHHHHHH--------------------------------------------HHHHHH-------
Confidence 999999999987632 1222221 111100
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. .....|+++|.||+|+... ++...+.. ..+++.+||+++.|+++++..+...+
T Consensus 103 ------------~--~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 103 ------------L--TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred ------------h--CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 0012599999999998632 23333322 23678999999999999988877543
No 147
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.54 E-value=3.6e-14 Score=121.80 Aligned_cols=79 Identities=19% Similarity=0.217 Sum_probs=55.4
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchh
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCI 146 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 146 (381)
+|+++|.+|||||||++.+...... +..| |+......+.+....+.++||||..... ......++++|++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~p--t~g~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ad~~ 71 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 71 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccCC--CCCcceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCCEE
Confidence 7999999999999999999543222 2222 2333334566677899999999974421 1112246899999
Q ss_pred HHHHhcCCC
Q 016864 147 LIVLDAIKP 155 (381)
Q Consensus 147 l~vvd~~~~ 155 (381)
++|+|++++
T Consensus 72 i~v~D~~~~ 80 (159)
T cd04150 72 IFVVDSNDR 80 (159)
T ss_pred EEEEeCCCH
Confidence 999999875
No 148
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.54 E-value=4.3e-14 Score=122.05 Aligned_cols=149 Identities=19% Similarity=0.149 Sum_probs=92.6
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEE--cCEEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITY--RGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~--~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|.+|||||||++++++...+ ..+|.++ +...-...+ .+..+.++||||..... ......+..+|
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ad 72 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDR-------ANLAAEIRKAN 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC-ccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhh-------HHHhhhcccCC
Confidence 7999999999999999999875432 2344322 221111223 34678899999975422 12223458899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|..++..- +.+.. .++..
T Consensus 73 ~~ilv~d~~~~~s~-~~~~~-------------------------------------------~~~~~------------ 96 (166)
T cd01893 73 VICLVYSVDRPSTL-ERIRT-------------------------------------------KWLPL------------ 96 (166)
T ss_pred EEEEEEECCCHHHH-HHHHH-------------------------------------------HHHHH------------
Confidence 99999998876421 11100 00000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCHH-------HHHHH----hcCCCeeeecccccccHHHHHHHHHHHc
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITLE-------ELEIL----DKLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-------~l~~l----~~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
+.......|+++|+||+|+.... .+..+ ....+++.+||.++.|++++++.+.+.+
T Consensus 97 ----------i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 97 ----------IRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred ----------HHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 00000126999999999987432 12111 1224688999999999999999887754
No 149
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.54 E-value=2.5e-14 Score=123.83 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=57.8
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchh
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCI 146 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 146 (381)
+|+++|++|||||||++.+++... . ....|.......+.+++..+.++|+||..... ......++.+|++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~-~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~a~~i 70 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--K-KVAPTVGFTPTKLRLDKYEVCIFDLGGGANFR-------GIWVNYYAEAHGL 70 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--c-cccCcccceEEEEEECCEEEEEEECCCcHHHH-------HHHHHHHcCCCEE
Confidence 479999999999999999998621 1 12233334445677788999999999964321 1122356899999
Q ss_pred HHHHhcCCCh
Q 016864 147 LIVLDAIKPI 156 (381)
Q Consensus 147 l~vvd~~~~~ 156 (381)
++|+|++++.
T Consensus 71 i~V~D~s~~~ 80 (167)
T cd04161 71 VFVVDSSDDD 80 (167)
T ss_pred EEEEECCchh
Confidence 9999998753
No 150
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.54 E-value=6e-14 Score=121.78 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=55.3
Q ss_pred EEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 68 VGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 68 i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
|+++|.+|||||||++.+++...+ ..+..|+.+.....+.+++. .+.++||||...... .....++.+|+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 72 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP-EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR-------LRPLSYPDTDV 72 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC-CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch-------hchhhcCCCCE
Confidence 579999999999999999886533 23333443434445566664 578999999654321 11124578999
Q ss_pred hHHHHhcCCCh
Q 016864 146 ILIVLDAIKPI 156 (381)
Q Consensus 146 il~vvd~~~~~ 156 (381)
+++|+|..++.
T Consensus 73 ~ilv~d~~~~~ 83 (174)
T smart00174 73 FLICFSVDSPA 83 (174)
T ss_pred EEEEEECCCHH
Confidence 99999988753
No 151
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.54 E-value=2.1e-14 Score=150.39 Aligned_cols=111 Identities=19% Similarity=0.317 Sum_probs=78.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhc---ccccc---cc------------cccceeeeecEEEEEcCEEeeecCcccccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTG---TFSEV---AS------------YEFTTLTCIPGVITYRGAKIQLLDLPGIIEGA 126 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g---~~~~~---~~------------~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~ 126 (381)
.++|+|+|++|+|||||+|+|.. ....+ .+ ..++|++.....+.|++.++.++||||+.+..
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 46999999999999999999953 22111 11 46899999999999999999999999986642
Q ss_pred cCCCcchhhhhcccCCcchhHHHHhcCCCh-HHHHHHHHHHHhcccccccCcCcccceeecc
Q 016864 127 KDGKGRGRQVISTARTCNCILIVLDAIKPI-THKRLIEKELEGFGIRLNKQPPNLTFRKKDK 187 (381)
Q Consensus 127 ~~~~~~~~~~~~~~~~~d~il~vvd~~~~~-~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r 187 (381)
......++.+|++++|+|+..+. .+...+...+...++ +..+..++.++
T Consensus 90 -------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~-----p~ivviNK~D~ 139 (689)
T TIGR00484 90 -------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEV-----PRIAFVNKMDK 139 (689)
T ss_pred -------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCC-----CEEEEEECCCC
Confidence 23444568899999999998753 333334444433332 33445555554
No 152
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.53 E-value=1e-14 Score=122.38 Aligned_cols=132 Identities=25% Similarity=0.323 Sum_probs=84.8
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchh
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCI 146 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 146 (381)
+|+++|.+|||||||+|++++.... ++. | ..+.+.+ .++||||...... .........++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~-t-----~~~~~~~---~~iDt~G~~~~~~---~~~~~~~~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK-T-----QAVEYND---GAIDTPGEYVENR---RLYSALIVTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc-c-----eeEEEcC---eeecCchhhhhhH---HHHHHHHHHhhcCCEE
Confidence 7999999999999999999987532 111 1 2234433 6799999732110 0122222346899999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCC
Q 016864 147 LIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDA 226 (381)
Q Consensus 147 l~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~ 226 (381)
++|+|+.++..... . .++.
T Consensus 67 ilv~d~~~~~s~~~-------------------------------------------~---~~~~--------------- 85 (142)
T TIGR02528 67 ALVQSATDPESRFP-------------------------------------------P---GFAS--------------- 85 (142)
T ss_pred EEEecCCCCCcCCC-------------------------------------------h---hHHH---------------
Confidence 99999987642100 0 0000
Q ss_pred ChhHHHHHHhcccccccEEEEEecCCcCCH----HHHHHH-h--cCCCeeeecccccccHHHHHHHH
Q 016864 227 TADDLIDVIEGSRIYMPCIYVINKIDQITL----EELEIL-D--KLPHYCPVSAHLEWNLDGLLEKI 286 (381)
Q Consensus 227 t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~----~~l~~l-~--~~~~~v~vSa~~~~gl~~L~~~i 286 (381)
.+ .+|.++|+||+|+... +..+.+ . ...+++.+||+++.|++++++.+
T Consensus 86 -------~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 86 -------IF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL 140 (142)
T ss_pred -------hc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence 00 1499999999998642 222222 1 22368999999999999998876
No 153
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.53 E-value=3.7e-14 Score=144.67 Aligned_cols=148 Identities=23% Similarity=0.237 Sum_probs=102.8
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE-EeeecCcccccccccCCCcchhhhhcccCC
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA-KIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~-~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..++|+++|++|+|||||+++|.+........+++|.+...-.+.+++. .+.++||||..... .........
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-------~~r~rga~~ 158 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-------SMRARGAKV 158 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchh-------hHHHhhhcc
Confidence 4489999999999999999999987665566778888776666777544 89999999975542 112234578
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|+.++..... . + . +..
T Consensus 159 aDiaILVVda~dgv~~qT-~-e----------------------------------------~----i~~---------- 182 (587)
T TIGR00487 159 TDIVVLVVAADDGVMPQT-I-E----------------------------------------A----ISH---------- 182 (587)
T ss_pred CCEEEEEEECCCCCCHhH-H-H----------------------------------------H----HHH----------
Confidence 899999999876531100 0 0 0 000
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCC--HHHHH-HHh-------c---CCCeeeecccccccHHHHHHHHHH
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQIT--LEELE-ILD-------K---LPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~--~~~l~-~l~-------~---~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
+. ....|+|+++||+|+.. .+.+. .+. . ..+++++||++|.|+++|++.+..
T Consensus 183 ------------~~--~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 183 ------------AK--AANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred ------------HH--HcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 00 11269999999999863 22221 111 1 135899999999999999998864
No 154
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.53 E-value=2.7e-14 Score=149.16 Aligned_cols=148 Identities=24% Similarity=0.234 Sum_probs=105.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
..+.|+++|+.|+|||||+++|.+.....+..+++|.+.....+.+++..+.++||||...+. ......+..+
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~-------~m~~rga~~a 361 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT-------AMRARGAQVT 361 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccch-------hHHHhhhhhC
Confidence 458999999999999999999987665556677888877767788889999999999975542 1222345778
Q ss_pred chhHHHHhcCCChH-HHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 144 NCILIVLDAIKPIT-HKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 144 d~il~vvd~~~~~~-~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
|++++|+|+.++.. +.... +..
T Consensus 362 DiaILVVdAddGv~~qT~e~-----------------------------------------------i~~---------- 384 (787)
T PRK05306 362 DIVVLVVAADDGVMPQTIEA-----------------------------------------------INH---------- 384 (787)
T ss_pred CEEEEEEECCCCCCHhHHHH-----------------------------------------------HHH----------
Confidence 99999999877521 11000 000
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH--HHH-HHHh----------cCCCeeeecccccccHHHHHHHHHHH
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL--EEL-EILD----------KLPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~--~~l-~~l~----------~~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
+. ....|+|+++||+|+... +.+ ..+. ...+++++||.+|.|+++|++.+...
T Consensus 385 ------------a~--~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 385 ------------AK--AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred ------------HH--hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 00 012699999999999642 222 1111 12468999999999999999998653
No 155
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.53 E-value=7.8e-14 Score=122.98 Aligned_cols=151 Identities=18% Similarity=0.110 Sum_probs=96.2
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|.+|||||||++++++........|..+.+.....+.+++ ..+.++||||..... ......++.+|
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~-------~~~~~~~~~~d 74 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR-------SLNNSYYRGAH 74 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------hhHHHHccCCC
Confidence 799999999999999999987654322233333344444556655 456889999964322 12223468899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|.+++.. .+.+.. ++..+..
T Consensus 75 ~iilv~d~~~~~s-~~~i~~--------------------------------------------~~~~i~~--------- 100 (188)
T cd04125 75 GYLLVYDVTDQES-FENLKF--------------------------------------------WINEINR--------- 100 (188)
T ss_pred EEEEEEECcCHHH-HHHHHH--------------------------------------------HHHHHHH---------
Confidence 9999999987532 222211 1111100
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. .....|.|+|+||+|+... +....+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 101 ----------~--~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 101 ----------Y--ARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred ----------h--CCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0012599999999998732 22222222 22689999999999999988887755
No 156
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.53 E-value=6.9e-14 Score=123.06 Aligned_cols=151 Identities=19% Similarity=0.105 Sum_probs=95.4
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc-C--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR-G--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~-g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
+|+++|.+|||||||++.+.+...+ ..+..|+.+.....+... + ..+.++||||...... -....++.+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~a 73 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR-------LRPLSYPDV 73 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH-------HHHHhCCCC
Confidence 7999999999999999999876533 334444443333345544 3 4678999999643221 111145789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|.+++..- +.+.. .++..+
T Consensus 74 d~ii~v~d~~~~~s~-~~~~~-------------------------------------------~~~~~~---------- 99 (187)
T cd04132 74 DVLLICYAVDNPTSL-DNVED-------------------------------------------KWFPEV---------- 99 (187)
T ss_pred CEEEEEEECCCHHHH-HHHHH-------------------------------------------HHHHHH----------
Confidence 999999999875321 11110 011110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC---------HHHHHHHh---cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT---------LEELEILD---KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~---------~~~l~~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.......|+|+|.||+|+.. .++.+.+. ...+++.+||+++.|++++++.+.+.+.
T Consensus 100 ------------~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 100 ------------NHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred ------------HHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 00001269999999999864 22222222 1226799999999999999998877553
No 157
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.53 E-value=1.3e-14 Score=131.22 Aligned_cols=82 Identities=23% Similarity=0.279 Sum_probs=64.5
Q ss_pred EEEEEcCCCCchHHHHHHHh---ccccc----------------------c------cccccceeeeecEEEEEcCEEee
Q 016864 67 RVGLVGFPSVGKSTLLNKLT---GTFSE----------------------V------ASYEFTTLTCIPGVITYRGAKIQ 115 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~---g~~~~----------------------~------~~~~~tT~~~~~g~i~~~g~~i~ 115 (381)
.|+++|++++|||||+.+|. |.... + ....++|++.....+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 48999999999999999994 32110 1 11468999999999999999999
Q ss_pred ecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 116 LLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 116 l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
++||||..+.. ......+..+|++++|+|+.++
T Consensus 81 liDtpG~~~~~-------~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRDFV-------PNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHHHH-------HHHHHHhhhCCEEEEEEECCCC
Confidence 99999986532 3445556889999999999875
No 158
>PLN03108 Rab family protein; Provisional
Probab=99.53 E-value=7.4e-14 Score=125.51 Aligned_cols=152 Identities=22% Similarity=0.129 Sum_probs=98.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||++.+++........|..+.+...+.+.+++. .+.++||||..... ......++.+
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~-------~~~~~~~~~a 79 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR-------SITRSYYRGA 79 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHhccC
Confidence 68999999999999999999986544333444444555667777764 56799999965432 1222345789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|..++..- +.+..+ +..+.
T Consensus 80 d~~vlv~D~~~~~s~-~~l~~~--------------------------------------------~~~~~--------- 105 (210)
T PLN03108 80 AGALLVYDITRRETF-NHLASW--------------------------------------------LEDAR--------- 105 (210)
T ss_pred CEEEEEEECCcHHHH-HHHHHH--------------------------------------------HHHHH---------
Confidence 999999999875321 111111 11100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. ......|+++|.||+|+.. .++.+.+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 106 ---------~---~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 106 ---------Q---HANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred ---------H---hcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0001269999999999864 233333321 23578999999999999887776543
No 159
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.53 E-value=9.7e-14 Score=119.15 Aligned_cols=152 Identities=20% Similarity=0.147 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++.+.+.... ..+..|+.+.....+..+|. .+.++||||...... -....++++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~a 73 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI-EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS-------MRDLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCchhheEEEEEEECCEEEEEEEEECCCcccccc-------hHHHHHhhC
Confidence 58999999999999999988765332 23444444444556666664 467899999643321 111135789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|.+++.. .+.+..++ ..+
T Consensus 74 d~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~~---------- 98 (163)
T cd04176 74 QGFIVVYSLVNQQT-FQDIKPMR--------------------------------------------DQI---------- 98 (163)
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHH----------
Confidence 99999999887532 11111111 110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.+.. ....+|+++|+||+|+... .+...+.. ..+++++||+++.|+++++..+.+.+
T Consensus 99 --------~~~~--~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 99 --------VRVK--GYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred --------HHhc--CCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 0000 0013699999999998532 12222221 23678999999999999999987654
No 160
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.53 E-value=9.6e-14 Score=117.74 Aligned_cols=139 Identities=19% Similarity=0.189 Sum_probs=102.9
Q ss_pred CceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhh
Q 016864 56 EGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 56 ~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
-.|++....+.+++|+|++|||||||+|.++|-..| ..|.+.++|....-. |.. .....+..|
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-----------~~G~i~i~g~d~t~~--~P~----~RPVSmlFQ 78 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-----------ASGEILINGVDHTAS--PPA----ERPVSMLFQ 78 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC-----------CCceEEEcCeecCcC--Ccc----cCChhhhhh
Confidence 355666667799999999999999999999999988 899999999766532 111 112223344
Q ss_pred hhcccCCcchhHHHHhcCCC-----hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 136 VISTARTCNCILIVLDAIKP-----ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~~~-----~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
.-+++.+.++--.|-=..+| ..+.+.+...+...|+ ...+-|..||+|++||..++ +.+|||++
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFs 158 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFS 158 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchh
Confidence 44444555554433222232 4678889999999999 78888999999999998887 67799999
Q ss_pred CCCHHHHHHHHH
Q 016864 200 NLDLDTVKAICS 211 (381)
Q Consensus 200 ~l~~~~v~~~l~ 211 (381)
.+|+..-..++.
T Consensus 159 ALdP~LR~eMl~ 170 (231)
T COG3840 159 ALDPALRAEMLA 170 (231)
T ss_pred hcCHHHHHHHHH
Confidence 999976666554
No 161
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.53 E-value=2.1e-14 Score=127.53 Aligned_cols=141 Identities=21% Similarity=0.288 Sum_probs=109.2
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+++|++.. +.+++||||||||||||||.|||...| +.|++.++|..++-. |. ..-+..|+.+.+
T Consensus 22 ~Vsl~v~~--Gei~~LIGPNGAGKTTlfNlitG~~~P-----------~~G~v~~~G~~it~l--~p-~~iar~Gi~RTF 85 (250)
T COG0411 22 DVSLEVRP--GEIVGLIGPNGAGKTTLFNLITGFYKP-----------SSGTVIFRGRDITGL--PP-HRIARLGIARTF 85 (250)
T ss_pred ceeEEEcC--CeEEEEECCCCCCceeeeeeecccccC-----------CCceEEECCcccCCC--CH-HHHHhccceeec
Confidence 55555554 489999999999999999999999999 999999999866533 11 122356777788
Q ss_pred hhhcccCCcchhHHHHhcCC-----------------ChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce----
Q 016864 135 QVISTARTCNCILIVLDAIK-----------------PITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---- 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~~~-----------------~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---- 191 (381)
|....+++.+++-.|.=+.. ..+-.++....|+.+++ ..+.+...||.|++.+..++
T Consensus 86 Q~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa 165 (250)
T COG0411 86 QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALA 165 (250)
T ss_pred ccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHh
Confidence 88888888888776654311 13345667788888998 77888899999999999887
Q ss_pred -----eeecccCCCCCHHHHHHHHH
Q 016864 192 -----FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 192 -----i~~~~~~~~l~~~~v~~~l~ 211 (381)
+.+|||.+++..++...+..
T Consensus 166 ~~P~lLLLDEPaAGln~~e~~~l~~ 190 (250)
T COG0411 166 TQPKLLLLDEPAAGLNPEETEELAE 190 (250)
T ss_pred cCCCEEEecCccCCCCHHHHHHHHH
Confidence 77799999999887766544
No 162
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.53 E-value=9.9e-14 Score=123.76 Aligned_cols=150 Identities=21% Similarity=0.255 Sum_probs=96.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccc-eeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFT-TLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~t-T~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.|+++|.+|||||||++.+...... ..++.| +.+.....+.++| ..+.++||+|...... .....++++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~-------l~~~y~~~a 73 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS-------ITSAYYRSA 73 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH-------HHHHHhcCC
Confidence 6899999999999999999864322 333322 3455555677776 5678999999744321 112246899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|.+++.. .+.+..++. .+...
T Consensus 74 d~iIlVfDvtd~~S-f~~l~~w~~-----------------------------------------~i~~~---------- 101 (202)
T cd04120 74 KGIILVYDITKKET-FDDLPKWMK-----------------------------------------MIDKY---------- 101 (202)
T ss_pred CEEEEEEECcCHHH-HHHHHHHHH-----------------------------------------HHHHh----------
Confidence 99999999987642 111211110 01110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh-c--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD-K--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~-~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+|+|.||+|+... ++.+.+. + ...++.+||++|.|++++++++.+.+
T Consensus 102 --------------~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 102 --------------ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred --------------CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0012699999999998632 2222232 2 23478999999999999998887654
No 163
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.53 E-value=5.5e-14 Score=121.06 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=97.1
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|++|||||||++++.+.. ....++.|+.+.....+.+++. .+.++||||...... ......++.+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~~~~d 73 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR-FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT------EQLERSIRWAD 73 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc-cccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc------chHHHHHHhCC
Confidence 48999999999999999987632 3455666665444555666665 577999999764211 11223457899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|++++.. .+.+..++ ..+..+.
T Consensus 74 ~~i~v~d~~~~~s-~~~~~~~~-----------------------------------------~~~~~~~---------- 101 (165)
T cd04146 74 GFVLVYSITDRSS-FDEISQLK-----------------------------------------QLIREIK---------- 101 (165)
T ss_pred EEEEEEECCCHHH-HHHHHHHH-----------------------------------------HHHHHHh----------
Confidence 9999999987632 12111111 0111100
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccc-cHHHHHHHHHHHc
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEW-NLDGLLEKIWEYL 290 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~-gl~~L~~~i~~~l 290 (381)
......|+++|+||+|+... ++...+. ...+++.+||.++. |++++++.+.+.+
T Consensus 102 ------------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 102 ------------KRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred ------------cCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 00112699999999998532 2222222 12467899999995 9999999988654
No 164
>PLN03110 Rab GTPase; Provisional
Probab=99.53 E-value=8.8e-14 Score=125.58 Aligned_cols=153 Identities=21% Similarity=0.142 Sum_probs=102.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+++|++........|....+.....+.+++ ..+.++||||..... ......++.+
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 85 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR-------AITSAYYRGA 85 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHhCCC
Confidence 6999999999999999999998765444455555566667777766 478889999965432 1112245889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
+++++|+|..++.. .+.+..+ +..+.-
T Consensus 86 ~~~ilv~d~~~~~s-~~~~~~~--------------------------------------------~~~~~~-------- 112 (216)
T PLN03110 86 VGALLVYDITKRQT-FDNVQRW--------------------------------------------LRELRD-------- 112 (216)
T ss_pred CEEEEEEECCChHH-HHHHHHH--------------------------------------------HHHHHH--------
Confidence 99999999876532 1122211 111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
. .....|+++|.||+|+... +....+. ...+++.+||+++.|++++++.+...+.
T Consensus 113 ----------~---~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 113 ----------H---ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIY 174 (216)
T ss_pred ----------h---CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 0012699999999998632 2233332 2246899999999999999998877653
No 165
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.52 E-value=1.1e-13 Score=118.84 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=94.8
Q ss_pred EEEEEcCCCCchHHHHHHHhccc-ccccccccce-eeeecEEEEEc---CEEeeecCcccccccccCCCcchhhhhcccC
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTF-SEVASYEFTT-LTCIPGVITYR---GAKIQLLDLPGIIEGAKDGKGRGRQVISTAR 141 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~-~~~~~~~~tT-~~~~~g~i~~~---g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 141 (381)
+|+++|.+|||||||++++.+.. ....++..|+ .+...-.+.+. ...+.++||||..... .-....+.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~ 74 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS-------DMVSNYWE 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH-------HHHHHHhC
Confidence 79999999999999999998542 3334555444 23322233332 2678899999964322 11122458
Q ss_pred CcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccc
Q 016864 142 TCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADIT 221 (381)
Q Consensus 142 ~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 221 (381)
.+|++++|+|.+++..- +.+ ..++..+.
T Consensus 75 ~~d~ii~v~d~~~~~s~-~~~--------------------------------------------~~~~~~~~------- 102 (164)
T cd04101 75 SPSVFILVYDVSNKASF-ENC--------------------------------------------SRWVNKVR------- 102 (164)
T ss_pred CCCEEEEEEECcCHHHH-HHH--------------------------------------------HHHHHHHH-------
Confidence 89999999998775321 111 11221111
Q ss_pred cccCCChhHHHHHHhcccccccEEEEEecCCcCCHH-----HHHHHh-c-CCCeeeecccccccHHHHHHHHHHHc
Q 016864 222 LRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-----ELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 222 ~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-----~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
......|+++|+||+|+.... ..+.+. . ..+++.+||.++.|++++++.+.+.+
T Consensus 103 ---------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 103 ---------------TASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ---------------HhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 000126999999999986432 122222 1 23578999999999999999987753
No 166
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.52 E-value=4.8e-14 Score=144.90 Aligned_cols=147 Identities=17% Similarity=0.162 Sum_probs=102.8
Q ss_pred EEEEEcCCCCchHHHHHHHhcccc---cccccccceeeeecEEEEE-cCEEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFS---EVASYEFTTLTCIPGVITY-RGAKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~---~~~~~~~tT~~~~~g~i~~-~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.|+++|+.++|||||+++|+|... +.....+.|++.....+.. ++..+.++||||.... ...+...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f-------i~~m~~g~~~ 74 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF-------LSNMLAGVGG 74 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH-------HHHHHHHhhc
Confidence 689999999999999999998642 2234568899876665544 4678999999997543 2455566788
Q ss_pred cchhHHHHhcCCChH-HHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccc
Q 016864 143 CNCILIVLDAIKPIT-HKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADIT 221 (381)
Q Consensus 143 ~d~il~vvd~~~~~~-~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 221 (381)
+|++++|+|+..+.. +..... .++..+
T Consensus 75 ~D~~lLVVda~eg~~~qT~ehl--------------------------------------------~il~~l-------- 102 (614)
T PRK10512 75 IDHALLVVACDDGVMAQTREHL--------------------------------------------AILQLT-------- 102 (614)
T ss_pred CCEEEEEEECCCCCcHHHHHHH--------------------------------------------HHHHHc--------
Confidence 999999999887531 111111 111111
Q ss_pred cccCCChhHHHHHHhccccccc-EEEEEecCCcCCHHHHH----HH----hc----CCCeeeecccccccHHHHHHHHHH
Q 016864 222 LRYDATADDLIDVIEGSRIYMP-CIYVINKIDQITLEELE----IL----DK----LPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 222 ~~~e~t~~~~~~~l~~~~~~~p-~i~v~NK~Dl~~~~~l~----~l----~~----~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
.+| .|+|+||+|+.+.+.++ .+ .. ..+++++||.++.|+++|.+.+..
T Consensus 103 -------------------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~ 163 (614)
T PRK10512 103 -------------------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQ 163 (614)
T ss_pred -------------------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 135 57999999998654321 11 11 256899999999999999999977
Q ss_pred HcC
Q 016864 289 YLN 291 (381)
Q Consensus 289 ~l~ 291 (381)
...
T Consensus 164 ~~~ 166 (614)
T PRK10512 164 LPE 166 (614)
T ss_pred hhc
Confidence 543
No 167
>PRK00007 elongation factor G; Reviewed
Probab=99.52 E-value=1.9e-14 Score=150.71 Aligned_cols=112 Identities=17% Similarity=0.293 Sum_probs=82.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHh---cccccc---c------------ccccceeeeecEEEEEcCEEeeecCcccccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLT---GTFSEV---A------------SYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGA 126 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~---g~~~~~---~------------~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~ 126 (381)
.++|+|+|++|+|||||+++|+ |....+ . ..+++|+++....+.|++..+.++||||+.+..
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 4699999999999999999995 543222 2 257899999999999999999999999987642
Q ss_pred cCCCcchhhhhcccCCcchhHHHHhcCCC-hHHHHHHHHHHHhcccccccCcCcccceeeccc
Q 016864 127 KDGKGRGRQVISTARTCNCILIVLDAIKP-ITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKG 188 (381)
Q Consensus 127 ~~~~~~~~~~~~~~~~~d~il~vvd~~~~-~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~ 188 (381)
.+....++.+|++++|+|+..+ ..+...+...+...++ +..+..++.++.
T Consensus 90 -------~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~-----p~iv~vNK~D~~ 140 (693)
T PRK00007 90 -------IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKV-----PRIAFVNKMDRT 140 (693)
T ss_pred -------HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCC-----CEEEEEECCCCC
Confidence 3456667889999999999876 4444555555555444 334555555553
No 168
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.52 E-value=1e-13 Score=121.70 Aligned_cols=80 Identities=21% Similarity=0.222 Sum_probs=57.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|++|||||||++.+...... . +. .|.......+.+.+..+.++||||..... ......++.+|+
T Consensus 18 ~kv~lvG~~~vGKTsli~~~~~~~~~-~-~~-~T~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ad~ 87 (182)
T PTZ00133 18 VRILMVGLDAAGKTTILYKLKLGEVV-T-TI-PTIGFNVETVEYKNLKFTMWDVGGQDKLR-------PLWRHYYQNTNG 87 (182)
T ss_pred cEEEEEcCCCCCHHHHHHHHhcCCcc-c-cC-CccccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCCE
Confidence 68999999999999999999643221 2 22 23333444566778899999999974321 122234689999
Q ss_pred hHHHHhcCCC
Q 016864 146 ILIVLDAIKP 155 (381)
Q Consensus 146 il~vvd~~~~ 155 (381)
+++|+|++++
T Consensus 88 iI~v~D~t~~ 97 (182)
T PTZ00133 88 LIFVVDSNDR 97 (182)
T ss_pred EEEEEeCCCH
Confidence 9999999865
No 169
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.51 E-value=1.5e-13 Score=119.97 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=59.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++.+.+... ..++..|+.+.....+.+++ ..+.++||+|....... . ...++.+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f-~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----~--~~~~~~a 73 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL-----R--PLSYPQT 73 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhh-----h--hhhcccC
Confidence 5899999999999999999986543 34555555554444566666 46779999997543210 1 1245789
Q ss_pred chhHHHHhcCCCh
Q 016864 144 NCILIVLDAIKPI 156 (381)
Q Consensus 144 d~il~vvd~~~~~ 156 (381)
|++++|+|.+++.
T Consensus 74 ~~~ilv~d~~~~~ 86 (175)
T cd01874 74 DVFLVCFSVVSPS 86 (175)
T ss_pred CEEEEEEECCCHH
Confidence 9999999998763
No 170
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.51 E-value=1.6e-13 Score=119.22 Aligned_cols=82 Identities=24% Similarity=0.247 Sum_probs=60.2
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+++++|++|||||||++.+.+.. ...+++.|+.+.....+.+++ ..+.++||||....... ....++.+|
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~a~ 73 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG-YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL-------RPLCYPDTD 73 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccc-------cccccCCCc
Confidence 78999999999999999997643 345667777666556667766 46678999997443211 112457899
Q ss_pred hhHHHHhcCCCh
Q 016864 145 CILIVLDAIKPI 156 (381)
Q Consensus 145 ~il~vvd~~~~~ 156 (381)
++++|+|..++.
T Consensus 74 ~~i~v~d~~~~~ 85 (173)
T cd04130 74 VFLLCFSVVNPS 85 (173)
T ss_pred EEEEEEECCCHH
Confidence 999999998764
No 171
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.51 E-value=1.5e-13 Score=121.39 Aligned_cols=150 Identities=21% Similarity=0.199 Sum_probs=98.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccc-cceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYE-FTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~-~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.+|+++|..|||||||+..+.+.... .+++ ..+.+...-.+.+++ ..+.++||+|..... .-....++.
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~l~~~~~~~ 78 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC-------TIFRSYSRG 78 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHhcC
Confidence 69999999999999999999874322 2332 223444444566666 567889999975432 111224589
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|.+++..- +.+ ..++.++..
T Consensus 79 ad~illVfD~t~~~Sf-~~~--------------------------------------------~~w~~~i~~------- 106 (189)
T cd04121 79 AQGIILVYDITNRWSF-DGI--------------------------------------------DRWIKEIDE------- 106 (189)
T ss_pred CCEEEEEEECcCHHHH-HHH--------------------------------------------HHHHHHHHH-------
Confidence 9999999999886421 111 122222110
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. ....|+|+|.||+|+.. .++.+.+.. ..+.+.+||+++.|++++++.+.+.+
T Consensus 107 -----------~----~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 107 -----------H----APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred -----------h----CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0 01269999999999863 333444322 23588999999999999999988754
No 172
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.51 E-value=1.9e-13 Score=117.49 Aligned_cols=150 Identities=22% Similarity=0.179 Sum_probs=94.8
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|++|||||||++.+.+........|..+.+.....+.+++ ..+.++||+|..... .......+.+|
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-------~~~~~~~~~~~ 74 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ-------TITKQYYRRAQ 74 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH-------hhHHHHhcCCc
Confidence 689999999999999999987543322223223333444566666 467789999964322 11222457899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|..++.. .+.+.. ++..+.
T Consensus 75 ~~i~v~d~~~~~s-f~~~~~--------------------------------------------~~~~~~---------- 99 (161)
T cd04117 75 GIFLVYDISSERS-YQHIMK--------------------------------------------WVSDVD---------- 99 (161)
T ss_pred EEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHHH----------
Confidence 9999999887532 222222 111110
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHH
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
.. .....|+++|.||.|+... ++...+.+ ..+.+.+||+++.|++++++.+.+.
T Consensus 100 --------~~---~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 100 --------EY---APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred --------Hh---CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 00 0012699999999998632 22222221 2467999999999999999998764
No 173
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.51 E-value=6.8e-14 Score=123.51 Aligned_cols=144 Identities=20% Similarity=0.249 Sum_probs=107.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
++++++.. ++.|+|||++|||||||+++|.|...+ ..|.+.++|.++.=.-..- .......+++..
T Consensus 22 ~Vnl~I~~--GE~VaiIG~SGaGKSTLLR~lngl~d~-----------t~G~i~~~g~~i~~~~~k~-lr~~r~~iGmIf 87 (258)
T COG3638 22 DVNLEINQ--GEMVAIIGPSGAGKSTLLRSLNGLVDP-----------TSGEILFNGVQITKLKGKE-LRKLRRDIGMIF 87 (258)
T ss_pred eEeEEeCC--CcEEEEECCCCCcHHHHHHHHhcccCC-----------CcceEEecccchhccchHH-HHHHHHhceeEe
Confidence 44555544 489999999999999999999997666 8999999886543221111 111233456777
Q ss_pred hhhcccCCcchhHHHHhcCC-------------ChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce--------
Q 016864 135 QVISTARTCNCILIVLDAIK-------------PITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN-------- 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~~~-------------~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~-------- 191 (381)
|...+++..+++-.|.-..- +.++.....+.|+..|+ ....+...||+|++||++|+
T Consensus 88 Q~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 88 QQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPK 167 (258)
T ss_pred ccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCC
Confidence 88888888888877765421 35677788899999999 78889999999999999997
Q ss_pred -eeecccCCCCCHHHHHHHHHH
Q 016864 192 -FTSTVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 192 -i~~~~~~~~l~~~~v~~~l~~ 212 (381)
+..|||.+.+|+..-+.+++.
T Consensus 168 iILADEPvasLDp~~a~~Vm~~ 189 (258)
T COG3638 168 IILADEPVASLDPESAKKVMDI 189 (258)
T ss_pred EEecCCcccccChhhHHHHHHH
Confidence 667899988888776665543
No 174
>PRK09866 hypothetical protein; Provisional
Probab=99.51 E-value=1.1e-13 Score=138.30 Aligned_cols=58 Identities=26% Similarity=0.240 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCCCCCCCCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccc-ccccccccee
Q 016864 27 HLGLLKAKLAKLRRELLTPTSKGGGGGGGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTL 100 (381)
Q Consensus 27 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~ 100 (381)
..+.++++++.|+.++.+... .. ..++++|++|+|||||+|+|+|... +.++.++||.
T Consensus 47 drR~i~~ri~~L~~~L~Kv~~---------------~~-~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 47 SQPNIAERHAMLNNELRKISR---------------LE-MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred cHHHHHHHHHHHHHHHHHHhc---------------cc-eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 345677888888888776541 12 7999999999999999999999875 4446666655
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.51 E-value=5.6e-14 Score=145.52 Aligned_cols=150 Identities=25% Similarity=0.271 Sum_probs=102.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc----CEEeeecCcccccccccCCCcchhhhhcc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR----GAKIQLLDLPGIIEGAKDGKGRGRQVIST 139 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~----g~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 139 (381)
..+.|+++|++|+|||||+++|++.....+..++.|.+.....+.+. +..+.++||||..... ......
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~-------~mr~rg 315 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFS-------SMRSRG 315 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHH-------HHHHHH
Confidence 44899999999999999999999876655566777776554444442 4789999999975432 122234
Q ss_pred cCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCc
Q 016864 140 ARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNAD 219 (381)
Q Consensus 140 ~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~ 219 (381)
+..+|++++|+|+.++.... .. +. +..
T Consensus 316 ~~~aDiaILVVDA~dGv~~Q-T~-----------------------------------------E~----I~~------- 342 (742)
T CHL00189 316 ANVTDIAILIIAADDGVKPQ-TI-----------------------------------------EA----INY------- 342 (742)
T ss_pred HHHCCEEEEEEECcCCCChh-hH-----------------------------------------HH----HHH-------
Confidence 57899999999987653110 00 00 000
Q ss_pred cccccCCChhHHHHHHhcccccccEEEEEecCCcCCH--HHH-HHHh----------cCCCeeeecccccccHHHHHHHH
Q 016864 220 ITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL--EEL-EILD----------KLPHYCPVSAHLEWNLDGLLEKI 286 (381)
Q Consensus 220 ~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~--~~l-~~l~----------~~~~~v~vSa~~~~gl~~L~~~i 286 (381)
+.. ...|+|+++||+|+... +.+ ..+. ...+++++||.+|.|+++|++.+
T Consensus 343 ---------------~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I 405 (742)
T CHL00189 343 ---------------IQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETI 405 (742)
T ss_pred ---------------HHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhh
Confidence 000 12699999999999742 222 1221 12468999999999999999998
Q ss_pred HHHc
Q 016864 287 WEYL 290 (381)
Q Consensus 287 ~~~l 290 (381)
....
T Consensus 406 ~~l~ 409 (742)
T CHL00189 406 LLLA 409 (742)
T ss_pred hhhh
Confidence 7654
No 176
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.51 E-value=1.3e-13 Score=126.73 Aligned_cols=161 Identities=21% Similarity=0.242 Sum_probs=100.4
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|.+|||||||++.+.+...+ ..+..|+.+.....+.++| ..+.++||+|...... ... ..+..+|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~-~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~-----~~~--~~~~~ad 73 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE-EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA-----MRR--LSILTGD 73 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC-CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH-----HHH--HHhccCC
Confidence 7999999999999999999765432 3455566566566677777 4677999999654211 011 1357899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|..++.. .+.+..++. .++.. ... +
T Consensus 74 ~iIlVfdv~~~~S-f~~i~~~~~----------------------------------------~I~~~-k~~---~---- 104 (247)
T cd04143 74 VFILVFSLDNRES-FEEVCRLRE----------------------------------------QILET-KSC---L---- 104 (247)
T ss_pred EEEEEEeCCCHHH-HHHHHHHHH----------------------------------------HHHHh-hcc---c----
Confidence 9999999887532 122211111 00000 000 0
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc---CCCeeeecccccccHHHHHHHHHHHcCC
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK---LPHYCPVSAHLEWNLDGLLEKIWEYLNL 292 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~---~~~~v~vSa~~~~gl~~L~~~i~~~l~~ 292 (381)
.........+|+|+|+||+|+.. .+++..+.. ...++.+||+++.|++++++.+......
T Consensus 105 --------~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~ 172 (247)
T cd04143 105 --------KNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKL 172 (247)
T ss_pred --------ccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 00000011369999999999863 233333322 2357999999999999999999886643
No 177
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.51 E-value=2.5e-13 Score=117.10 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=91.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc--CEEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR--GAKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~--g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++++++..... .+..|+-+.....+..+ ...+.++||||...... .....++.+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 73 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE-SYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA-------MQRLSISKG 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCcchheEEEEEEECCEEEEEEEEECCCCCcchH-------HHHHHhhcC
Confidence 589999999999999999998764321 22222211122223333 35678999999754321 111235788
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|..++... +.+..++ ..+..+.
T Consensus 74 ~~~ilv~d~~~~~s~-~~~~~~~-----------------------------------------~~i~~~~--------- 102 (165)
T cd04140 74 HAFILVYSVTSKQSL-EELKPIY-----------------------------------------ELICEIK--------- 102 (165)
T ss_pred CEEEEEEECCCHHHH-HHHHHHH-----------------------------------------HHHHHHh---------
Confidence 999999998775321 1111111 0111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH-----HHHHHh-c-CCCeeeecccccccHHHHHHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-----ELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-----~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
.......|+++|.||+|+.... +...+. . ..+++.+||+++.|++++++.+.+
T Consensus 103 ------------~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~ 162 (165)
T cd04140 103 ------------GNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLN 162 (165)
T ss_pred ------------cCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHh
Confidence 0000126999999999986421 111121 1 235789999999999999999875
No 178
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.51 E-value=2.2e-13 Score=118.19 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=56.2
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|++|+|||||++.+++...+ ..+..|+.+.....+.+++. .+.++||||....... .. ...+.+|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----~~--~~~~~~~ 73 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL-----RP--LSYPMTD 73 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc-----cc--ccCCCCC
Confidence 7999999999999999999876432 33444444444445666664 4678999996543211 11 2357889
Q ss_pred hhHHHHhcCCCh
Q 016864 145 CILIVLDAIKPI 156 (381)
Q Consensus 145 ~il~vvd~~~~~ 156 (381)
++++|+|..++.
T Consensus 74 ~~ilv~~~~~~~ 85 (174)
T cd04135 74 VFLICFSVVNPA 85 (174)
T ss_pred EEEEEEECCCHH
Confidence 999999987763
No 179
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.50 E-value=2.8e-13 Score=117.14 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=95.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++++++........+..+.+.....+.+++. .+.++||||...... .....++.+
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~~~~~~~~~ 78 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS-------LRTPFYRGS 78 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH-------hHHHHhcCC
Confidence 69999999999999999999876543333333333443445566654 567899999644221 111245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|..++..- +.+..+.. .++......
T Consensus 79 d~~i~v~d~~~~~s~-~~~~~~~~----------------------------------------~~~~~~~~~------- 110 (170)
T cd04116 79 DCCLLTFAVDDSQSF-QNLSNWKK----------------------------------------EFIYYADVK------- 110 (170)
T ss_pred CEEEEEEECCCHHHH-HhHHHHHH----------------------------------------HHHHhcccc-------
Confidence 999999888765321 11111110 011100000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC----HHHHHHHh-c--CCCeeeecccccccHHHHHHHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT----LEELEILD-K--LPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~----~~~l~~l~-~--~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
.....|+++|+||+|+.. .++.+.+. . ..+++.+||.++.|++++++.+.+.
T Consensus 111 --------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 111 --------------EPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred --------------cCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 011269999999999863 23343332 2 2367899999999999999988764
No 180
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.49 E-value=3.6e-13 Score=116.75 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||++++++...+....+..+.+.....+.+++ ..+.++||||....... -....++++
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------~~~~~~~~~ 76 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKS------MVQHYYRNV 76 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHh------hHHHhhcCC
Confidence 5899999999999999999987654323333333444555666766 57889999996442110 011235789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|..++... +.+. .++..+...
T Consensus 77 d~~i~v~d~~~~~s~-~~~~--------------------------------------------~~~~~~~~~------- 104 (170)
T cd04115 77 HAVVFVYDVTNMASF-HSLP--------------------------------------------SWIEECEQH------- 104 (170)
T ss_pred CEEEEEEECCCHHHH-HhHH--------------------------------------------HHHHHHHHh-------
Confidence 999999999876421 1111 111111000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccc---cccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHL---EWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~---~~gl~~L~~~i~~~l 290 (381)
. .....|+++|+||+|+... ++...+.. ..+++.+||++ +.++++++..+.+.+
T Consensus 105 -----------~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 105 -----------S--LPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred -----------c--CCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 0 0012699999999998632 22222221 24688999999 888999888877644
No 181
>CHL00071 tufA elongation factor Tu
Probab=99.49 E-value=9.6e-14 Score=136.96 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=65.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc----------------cccccceeeeecEEEEEcCEEeeecCcccccccccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV----------------ASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG 129 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~----------------~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~ 129 (381)
.+|+++|++|+|||||+++|++....+ .-.+++|++...-.+.+++.++.++||||+.+.
T Consensus 13 ~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~---- 88 (409)
T CHL00071 13 VNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY---- 88 (409)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH----
Confidence 789999999999999999998752211 123788998876666677889999999997542
Q ss_pred CcchhhhhcccCCcchhHHHHhcCCC
Q 016864 130 KGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 130 ~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
...+...+..+|++++|+|+..+
T Consensus 89 ---~~~~~~~~~~~D~~ilVvda~~g 111 (409)
T CHL00071 89 ---VKNMITGAAQMDGAILVVSAADG 111 (409)
T ss_pred ---HHHHHHHHHhCCEEEEEEECCCC
Confidence 34555667889999999999865
No 182
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.49 E-value=1.3e-13 Score=119.16 Aligned_cols=148 Identities=18% Similarity=0.162 Sum_probs=90.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEE--EEEc--CEEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGV--ITYR--GAKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~--i~~~--g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
+|+++|.+|||||||+++++..... ..+. .|....... +..+ ...+.++||||....... . ...+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----~--~~~~~~ 72 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFE-KKYV-ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL-----R--DGYYIG 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCC-CceeeEEEEEEEEECCEEEEEEEEECCCChhhccc-----c--HHHhcC
Confidence 7999999999999999999754321 1111 222222222 2223 357889999997442210 1 113478
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|.+++..- +.+. .++..+.
T Consensus 73 ~d~~i~v~d~~~~~s~-~~~~--------------------------------------------~~~~~i~-------- 99 (166)
T cd00877 73 GQCAIIMFDVTSRVTY-KNVP--------------------------------------------NWHRDLV-------- 99 (166)
T ss_pred CCEEEEEEECCCHHHH-HHHH--------------------------------------------HHHHHHH--------
Confidence 9999999999876321 1111 1111110
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCHH---HHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE---ELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~---~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
......|+++|.||+|+.... ....+. ....++.+||.++.|++++++.+.+.+
T Consensus 100 --------------~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 100 --------------RVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred --------------HhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 000026999999999986221 111121 224589999999999999999998765
No 183
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.49 E-value=2.9e-13 Score=117.54 Aligned_cols=151 Identities=19% Similarity=0.124 Sum_probs=94.9
Q ss_pred EEEEEcCCCCchHHHHHHHhccccccccc-ccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASY-EFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~-~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
+|+++|.+|||||||++++.+.... ..+ |....+.....+.++| ..+.++||||..... ......++.+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~a 73 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD-KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFK-------CIASTYYRGA 73 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHH-------hhHHHHhcCC
Confidence 7899999999999999999986432 333 3223344445556665 468899999975432 1112346899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+. .++..+.-.
T Consensus 74 d~~ilv~d~~~~~s-~~~~~--------------------------------------------~~~~~~~~~------- 101 (170)
T cd04108 74 QAIIIVFDLTDVAS-LEHTR--------------------------------------------QWLEDALKE------- 101 (170)
T ss_pred CEEEEEEECcCHHH-HHHHH--------------------------------------------HHHHHHHHh-------
Confidence 99999999976421 11111 111111000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHHH-------HHHHh-c-CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-------LEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-------l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. .....|+++|.||+|+..... ...+. + ..+++.+||+++.|++++++.+....
T Consensus 102 -----------~--~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 102 -----------N--DPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred -----------c--CCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 000147899999999863221 11221 1 23578899999999999999987754
No 184
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.49 E-value=1.2e-13 Score=128.54 Aligned_cols=97 Identities=16% Similarity=0.327 Sum_probs=71.9
Q ss_pred EEEEEcCCCCchHHHHHHHh---ccccc---c------------cccccceeeeecEEEEEcCEEeeecCcccccccccC
Q 016864 67 RVGLVGFPSVGKSTLLNKLT---GTFSE---V------------ASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD 128 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~---g~~~~---~------------~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~ 128 (381)
.|+++|++|+|||||+++|. |.... + ....++|+++....+.|++.++.++||||..+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 48999999999999999995 43221 1 1245889999999999999999999999986533
Q ss_pred CCcchhhhhcccCCcchhHHHHhcCCC-hHHHHHHHHHHHhcc
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAIKP-ITHKRLIEKELEGFG 170 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~~~-~~~~~~i~~~l~~~~ 170 (381)
.+....++.+|++++|+|+..+ ..+...+...+...+
T Consensus 79 -----~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~ 116 (270)
T cd01886 79 -----IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYN 116 (270)
T ss_pred -----HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3455567889999999999875 333344444444443
No 185
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.49 E-value=1.9e-13 Score=116.71 Aligned_cols=143 Identities=23% Similarity=0.201 Sum_probs=102.5
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+++|++.+ | ..+-++||+|||||||++.|.+...| +.|.+.++|..+.-+..-- ++.....++...
T Consensus 20 ~vs~~i~~-G-ef~fl~GpSGAGKSTllkLi~~~e~p-----------t~G~i~~~~~dl~~l~~~~-iP~LRR~IGvVF 85 (223)
T COG2884 20 DVSFHIPK-G-EFVFLTGPSGAGKSTLLKLIYGEERP-----------TRGKILVNGHDLSRLKGRE-IPFLRRQIGVVF 85 (223)
T ss_pred CceEeecC-c-eEEEEECCCCCCHHHHHHHHHhhhcC-----------CCceEEECCeecccccccc-cchhhheeeeEe
Confidence 56666665 3 79999999999999999999999988 9999999987765432110 112223345556
Q ss_pred hhhcccCCcchhHHHH-----hcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIVL-----DAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv-----d~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|-..++.+.++...|. -...+.+-.+.+.+.|+..|+ ....-|..||+|++||.+|+ +.+|||+
T Consensus 86 QD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPT 165 (223)
T COG2884 86 QDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPT 165 (223)
T ss_pred eeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCC
Confidence 6666666666543332 223345556778899999999 77788999999999999987 6678888
Q ss_pred CCCCHHHHHHHHH
Q 016864 199 TNLDLDTVKAICS 211 (381)
Q Consensus 199 ~~l~~~~v~~~l~ 211 (381)
.++|++.-..++.
T Consensus 166 GNLDp~~s~~im~ 178 (223)
T COG2884 166 GNLDPDLSWEIMR 178 (223)
T ss_pred CCCChHHHHHHHH
Confidence 8888765554443
No 186
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.49 E-value=3.4e-13 Score=117.35 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++.+.+...+ ..+..|+.+.....+.+++ ..+.++||||...... -....++.+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------l~~~~~~~~ 74 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP-DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA-------MRDQYMRCG 74 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC-CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHH-------HhHHHhhcC
Confidence 58999999999999999999865432 2333343333334556666 4578899999754321 111245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|..++..- +.+..+. ..+...
T Consensus 75 d~~ilv~d~~~~~Sf-~~~~~~~-----------------------------------------~~i~~~---------- 102 (172)
T cd04141 75 EGFIICYSVTDRHSF-QEASEFK-----------------------------------------KLITRV---------- 102 (172)
T ss_pred CEEEEEEECCchhHH-HHHHHHH-----------------------------------------HHHHHh----------
Confidence 999999998876421 1111110 011110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. .....|+++|.||+|+... ++...+. ...+++.+||+++.|++++++.+...+
T Consensus 103 ------------~-~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 103 ------------R-LTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ------------c-CCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 0 0112699999999998532 2333332 123678999999999999999987654
No 187
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.49 E-value=1.6e-13 Score=125.50 Aligned_cols=97 Identities=19% Similarity=0.309 Sum_probs=68.8
Q ss_pred EEEEEcCCCCchHHHHHHHhcccc---ccc---------------ccccceeeeecEEEEEcCEEeeecCcccccccccC
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFS---EVA---------------SYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD 128 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~---~~~---------------~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~ 128 (381)
.|+++|++|+|||||+++|+.... ..+ ...++|+......+.+++.++.++||||..+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 489999999999999999975321 111 123556666677788999999999999986542
Q ss_pred CCcchhhhhcccCCcchhHHHHhcCCC-hHHHHHHHHHHHhcc
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAIKP-ITHKRLIEKELEGFG 170 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~~~-~~~~~~i~~~l~~~~ 170 (381)
......++.+|.+++|+|+.++ ..+.+.+...+...+
T Consensus 79 -----~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~ 116 (237)
T cd04168 79 -----AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLN 116 (237)
T ss_pred -----HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcC
Confidence 3344566889999999999876 333444555554444
No 188
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.6e-13 Score=124.28 Aligned_cols=116 Identities=21% Similarity=0.209 Sum_probs=76.7
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeec---CcccccccccCCCc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLL---DLPGIIEGAKDGKG 131 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~---DtpG~~~~~~~~~~ 131 (381)
+++|++.. +..++|+||||||||||+++|+|...| ..|.+.+.|.++.-. ...|++++..
T Consensus 22 ~i~l~v~~--G~~~~iiGPNGaGKSTLlK~iLGll~p-----------~~G~i~~~g~~~~~~~~~~~IgYVPQ~~---- 84 (254)
T COG1121 22 DISLSVEK--GEITALIGPNGAGKSTLLKAILGLLKP-----------SSGEIKIFGKPVRKRRKRLRIGYVPQKS---- 84 (254)
T ss_pred ccEEEEcC--CcEEEEECCCCCCHHHHHHHHhCCCcC-----------CcceEEEccccccccccCCeEEEcCccc----
Confidence 44555544 489999999999999999999998888 899999877543222 1235555421
Q ss_pred chhhhhcccCCcchhHHHHhc--C-------CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 132 RGRQVISTARTCNCILIVLDA--I-------KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 132 ~~~~~~~~~~~~d~il~vvd~--~-------~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
.++.--..++.-+|.-. . ....+.+.+.+.|+..|+ ..++++..||+|++||.-++
T Consensus 85 ----~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 85 ----SVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred ----ccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHH
Confidence 01111122332222221 0 013456788999999998 78889999999999994443
No 189
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.49 E-value=2.7e-13 Score=122.38 Aligned_cols=80 Identities=18% Similarity=0.143 Sum_probs=54.6
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchh
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCI 146 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 146 (381)
+|+++|.+|||||||++.+.+.... . + ..|+........+....+.++||||...... ... ..++.+|++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~-~-~-~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~-----l~~--~~~~~ad~~ 71 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK-D-T-VSTVGGAFYLKQWGPYNISIWDTAGREQFHG-----LGS--MYCRGAAAV 71 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-C-C-CCccceEEEEEEeeEEEEEEEeCCCcccchh-----hHH--HHhccCCEE
Confidence 7899999999999999999876532 1 1 2233222223344567789999999744321 111 235889999
Q ss_pred HHHHhcCCCh
Q 016864 147 LIVLDAIKPI 156 (381)
Q Consensus 147 l~vvd~~~~~ 156 (381)
++|+|.+++.
T Consensus 72 IlV~Dvt~~~ 81 (220)
T cd04126 72 ILTYDVSNVQ 81 (220)
T ss_pred EEEEECCCHH
Confidence 9999998753
No 190
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.48 E-value=3.6e-13 Score=116.42 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=95.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++++++... ...+..|+.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 73 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF-IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA-------MRELYIKSG 73 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchh-------hhHHHHhhC
Confidence 5799999999999999999986543 23344454444444455555 4678999999654321 111134678
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
+.+++|+|..++.. .+.+..+ ...
T Consensus 74 ~~~vlv~~~~~~~s-~~~~~~~--------------------------------------------~~~----------- 97 (168)
T cd04177 74 QGFLLVYSVTSEAS-LNELGEL--------------------------------------------REQ----------- 97 (168)
T ss_pred CEEEEEEECCCHHH-HHHHHHH--------------------------------------------HHH-----------
Confidence 88888988876531 1111111 000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH-----HHHHH-hcC--CCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-----ELEIL-DKL--PHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-----~l~~l-~~~--~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
+.+.. .....|.+++.||+|+.... +...+ ..+ .+.+.+||+++.|++++++.+...+
T Consensus 98 -------i~~~~--~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 98 -------VLRIK--DSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred -------HHHhh--CCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00000 01126999999999986422 22222 122 4689999999999999999998754
No 191
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.48 E-value=3.7e-13 Score=116.92 Aligned_cols=82 Identities=21% Similarity=0.219 Sum_probs=57.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||++++.+...+ ..+..|+.+...+.+.+++. .+.++||||....... . ...+.++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----~--~~~~~~~ 73 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL-----R--PLSYPDT 73 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhc-----c--ccccCCC
Confidence 48999999999999999999875432 33444444444566777664 5689999997432211 1 1235788
Q ss_pred chhHHHHhcCCC
Q 016864 144 NCILIVLDAIKP 155 (381)
Q Consensus 144 d~il~vvd~~~~ 155 (381)
|++++|+|..++
T Consensus 74 d~~i~v~~~~~~ 85 (175)
T cd01870 74 DVILMCFSIDSP 85 (175)
T ss_pred CEEEEEEECCCH
Confidence 999988888765
No 192
>PTZ00369 Ras-like protein; Provisional
Probab=99.48 E-value=4.2e-13 Score=118.54 Aligned_cols=153 Identities=22% Similarity=0.128 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++++.+... ...+..|+.+.....+.+++. .+.++||||..+... -....++.+
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------l~~~~~~~~ 77 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHF-IDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSA-------MRDQYMRTG 77 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchh-------hHHHHhhcC
Confidence 6999999999999999999987542 223333433333444556654 567899999754321 111245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|.+++.. .+.+..++. .++.
T Consensus 78 d~iilv~D~s~~~s-~~~~~~~~~----------------------------------------~i~~------------ 104 (189)
T PTZ00369 78 QGFLCVYSITSRSS-FEEIASFRE----------------------------------------QILR------------ 104 (189)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHH----------------------------------------HHHH------------
Confidence 99999999987642 111111110 0000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh-c-CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
... ....|+++|.||+|+... ++...+. . ..+++.+||.++.|++++++.+.+.+.
T Consensus 105 ----------~~~--~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 105 ----------VKD--KDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred ----------hcC--CCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 000 012699999999998532 1222221 1 236799999999999999999887653
No 193
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.48 E-value=1.1e-13 Score=130.34 Aligned_cols=134 Identities=22% Similarity=0.254 Sum_probs=86.8
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeee-----cCcccccccccCC
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQL-----LDLPGIIEGAKDG 129 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l-----~DtpG~~~~~~~~ 129 (381)
+++|++.. +..+||+|+||||||||+++|+|...| ..|.+.++|.++.- .-..|++...+
T Consensus 23 ~vs~~i~~--Gei~gllG~NGAGKTTllk~l~gl~~p-----------~~G~i~i~G~~~~~~~~~~~~~igy~~~~~-- 87 (293)
T COG1131 23 GVSFEVEP--GEIFGLLGPNGAGKTTLLKILAGLLKP-----------TSGEILVLGYDVVKEPAKVRRRIGYVPQEP-- 87 (293)
T ss_pred ceeEEEcC--CeEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEEcCEeCccCHHHHHhheEEEccCC--
Confidence 45555554 479999999999999999999999888 89999998865431 11123332211
Q ss_pred CcchhhhhcccCCcchhHHHHhcCCC--hHHHHHHHHHHHhccccc--ccCcCcccceeeccccce---------eeecc
Q 016864 130 KGRGRQVISTARTCNCILIVLDAIKP--ITHKRLIEKELEGFGIRL--NKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 130 ~~~~~~~~~~~~~~d~il~vvd~~~~--~~~~~~i~~~l~~~~~~~--~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
.+...+...+.+-++...... ....+.+.+.++.+++.. ++++..||.|+++|..++ +.+||
T Consensus 88 -----~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 88 -----SLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred -----CCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 111122223334444343332 244567888999999943 778999999999997776 44455
Q ss_pred cCCCCCHHHHHH
Q 016864 197 TNTNLDLDTVKA 208 (381)
Q Consensus 197 ~~~~l~~~~v~~ 208 (381)
|++++|+.....
T Consensus 163 Pt~GLDp~~~~~ 174 (293)
T COG1131 163 PTSGLDPESRRE 174 (293)
T ss_pred CCcCCCHHHHHH
Confidence 555555544433
No 194
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.48 E-value=8e-13 Score=119.74 Aligned_cols=153 Identities=21% Similarity=0.195 Sum_probs=94.7
Q ss_pred EEEEEcCCCCchHHHHHHHhccccccccccccee-eeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccC-C
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTL-TCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTAR-T 142 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~-~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~-~ 142 (381)
+|+++|.+|||||||++.+++.......++.+.- +...-.+.+++ ..+.++||||.... .... .+. .
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~-------~~~~--~~~~~ 72 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW-------TEDS--CMQYQ 72 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH-------HHhH--HhhcC
Confidence 7999999999999999999654332122322211 33334455544 56889999997511 1111 234 8
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|++++.. .+.+.. ++..+.
T Consensus 73 ad~iilV~d~td~~S-~~~~~~--------------------------------------------~~~~l~-------- 99 (221)
T cd04148 73 GDAFVVVYSVTDRSS-FERASE--------------------------------------------LRIQLR-------- 99 (221)
T ss_pred CCEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHHH--------
Confidence 999999999987632 111111 111100
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHcCCc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLNLT 293 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~~~ 293 (381)
.. . ....+|+|+|.||+|+... ++...+.. ..+++.+||.++.|++++++.+...+...
T Consensus 100 ----------~~-~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~ 165 (221)
T cd04148 100 ----------RN-R-QLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLR 165 (221)
T ss_pred ----------Hh-c-CCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence 00 0 0013699999999998642 22222221 23578999999999999999998877543
No 195
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.48 E-value=1.3e-13 Score=125.41 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=93.2
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecC------cccccccccC
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLD------LPGIIEGAKD 128 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~D------tpG~~~~~~~ 128 (381)
+.+|++.. +..++|+||||||||||+++|+|...+ ..|.+.++|.++.=+. .-++.++.
T Consensus 20 ~ls~~i~~--G~i~~iiGpNG~GKSTLLk~l~g~l~p-----------~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~-- 84 (258)
T COG1120 20 DLSFSIPK--GEITGILGPNGSGKSTLLKCLAGLLKP-----------KSGEVLLDGKDIASLSPKELAKKLAYVPQS-- 84 (258)
T ss_pred cceEEecC--CcEEEEECCCCCCHHHHHHHHhccCCC-----------CCCEEEECCCchhhcCHHHHhhhEEEeccC--
Confidence 55666655 489999999999999999999999888 8999999997654321 11222222
Q ss_pred CCcchhhhhcccCCcchhHHHHhcC---------CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce------
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAI---------KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN------ 191 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~---------~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~------ 191 (381)
........+.-+|.-.. ....+.+.+.+.|+..++ ...+.+..||+|++||..++
T Consensus 85 --------~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~ 156 (258)
T COG1120 85 --------PSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQE 156 (258)
T ss_pred --------CCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcC
Confidence 11111222222222111 124566678888999999 67888999999999998887
Q ss_pred ---eeecccCCCCCHHHHHHHHH
Q 016864 192 ---FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 192 ---i~~~~~~~~l~~~~v~~~l~ 211 (381)
+.+|||++.+|.....++++
T Consensus 157 ~~iLLLDEPTs~LDi~~Q~evl~ 179 (258)
T COG1120 157 TPILLLDEPTSHLDIAHQIEVLE 179 (258)
T ss_pred CCEEEeCCCccccCHHHHHHHHH
Confidence 77789998888876655544
No 196
>PLN03073 ABC transporter F family; Provisional
Probab=99.48 E-value=2.1e-13 Score=142.60 Aligned_cols=164 Identities=19% Similarity=0.311 Sum_probs=104.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE-EeeecCcccccccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA-KIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~-~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
++++....+.+++|+|+||||||||+++|+|...| ..|.+.+++. .+ |++.+... .
T Consensus 527 ~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p-----------~~G~I~~~~~~~i------gyv~Q~~~------~ 583 (718)
T PLN03073 527 NLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP-----------SSGTVFRSAKVRM------AVFSQHHV------D 583 (718)
T ss_pred ccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCceEEECCceeE------EEEecccc------c
Confidence 44455555589999999999999999999998877 7788877542 22 22222110 0
Q ss_pred hhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHH
Q 016864 136 VISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~ 212 (381)
.+. +. ...++.+.... +....+.+...|+.+++. ..+++..||+|+++|..++ .
T Consensus 584 ~l~-~~-~~~~~~~~~~~-~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLA--------------------r 640 (718)
T PLN03073 584 GLD-LS-SNPLLYMMRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFA--------------------K 640 (718)
T ss_pred cCC-cc-hhHHHHHHHhc-CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHH--------------------H
Confidence 000 00 01111111111 111234577888889882 5778999999999995443 3
Q ss_pred hcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH-HHHhcCCCeeeecccccccHHHHHHHHH
Q 016864 213 YRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL-EILDKLPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 213 ~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l-~~l~~~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
..+.+++++++|||| |.+|..+.+.+ +.+..+.+++++++|+...+..++++++
T Consensus 641 aL~~~p~lLLLDEPT---------------------~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~ 695 (718)
T PLN03073 641 ITFKKPHILLLDEPS---------------------NHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELW 695 (718)
T ss_pred HHhcCCCEEEEcCCC---------------------CCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE
Confidence 334567777888887 78887766554 3344455688899999887777765544
No 197
>PLN03118 Rab family protein; Provisional
Probab=99.48 E-value=4.3e-13 Score=120.58 Aligned_cols=154 Identities=21% Similarity=0.135 Sum_probs=96.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+++|++.... ...|.++.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~~~~ 86 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT-------LTSSYYRNA 86 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHHhcC
Confidence 69999999999999999999876532 1122223333334455555 4678999999754321 112245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|.+++.. .+.+...+. ..+..+
T Consensus 87 d~~vlv~D~~~~~s-f~~~~~~~~----------------------------------------~~~~~~---------- 115 (211)
T PLN03118 87 QGIILVYDVTRRET-FTNLSDVWG----------------------------------------KEVELY---------- 115 (211)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHH----------------------------------------HHHHHh----------
Confidence 99999999987532 111111100 001000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh-c-CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
. .....|.++|.||+|+... ++...+. . ...++.+||+++.|++++++.+.+.+.
T Consensus 116 ------------~-~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 116 ------------S-TNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred ------------c-CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 0012589999999998632 2222222 1 234788999999999999999987653
No 198
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.3e-13 Score=130.24 Aligned_cols=138 Identities=21% Similarity=0.216 Sum_probs=106.8
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++. .+..++|+||+||||||||++|+|...+ +.|.+.++|..+.-+ +....++++..
T Consensus 21 ~i~l~i~--~Gef~vllGPSGcGKSTlLr~IAGLe~~-----------~~G~I~i~g~~vt~l------~P~~R~iamVF 81 (338)
T COG3839 21 DVNLDIE--DGEFVVLLGPSGCGKSTLLRMIAGLEEP-----------TSGEILIDGRDVTDL------PPEKRGIAMVF 81 (338)
T ss_pred cceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCC------ChhHCCEEEEe
Confidence 3444444 4489999999999999999999999988 999999999877632 23345677888
Q ss_pred hhhcccCCcchhHHHH---hcCC-C-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIVL---DAIK-P-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv---d~~~-~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|...+.++.++.-.+- .... + .+-.+++.+..+.+++ .++++|..||+|++||..++ +.+|||+
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL 161 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence 9998999988855542 2221 2 3446677888888888 89999999999999998886 7789999
Q ss_pred CCCCHHHHHHHHH
Q 016864 199 TNLDLDTVKAICS 211 (381)
Q Consensus 199 ~~l~~~~v~~~l~ 211 (381)
+++|...-..+-.
T Consensus 162 SnLDa~lR~~mr~ 174 (338)
T COG3839 162 SNLDAKLRVLMRS 174 (338)
T ss_pred hHhhHHHHHHHHH
Confidence 9999865444433
No 199
>PRK12736 elongation factor Tu; Reviewed
Probab=99.47 E-value=1.6e-13 Score=134.69 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc----------------ccccccceeeeecEEEEEcCEEeeecCcccccccccC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE----------------VASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD 128 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~----------------~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~ 128 (381)
..+|+++|+.++|||||+++|++.... ..-..++|++...-.+..++..+.++||||..+..
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~-- 89 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV-- 89 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH--
Confidence 378999999999999999999874211 11156889988655555567889999999975432
Q ss_pred CCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
..+...+..+|++++|+|+..+
T Consensus 90 -----~~~~~~~~~~d~~llVvd~~~g 111 (394)
T PRK12736 90 -----KNMITGAAQMDGAILVVAATDG 111 (394)
T ss_pred -----HHHHHHHhhCCEEEEEEECCCC
Confidence 4555566789999999999865
No 200
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.47 E-value=1.1e-13 Score=124.83 Aligned_cols=140 Identities=21% Similarity=0.218 Sum_probs=83.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.... .......++..+.
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~~q~ 88 (216)
T TIGR00960 21 NLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP-----------TRGKIRFNGQDLTRLRGREI-PFLRRHIGMVFQD 88 (216)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEehhhcChhHH-HHHHHhceEEecC
Confidence 33444444589999999999999999999998877 78999999876532211000 0000111111222
Q ss_pred hcccCCcchhHHH---Hhc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIV---LDA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
.......++.-.+ ... ..+....+.+.+.++.+++ ..++.+..||+|+++|..++ +.+|||+++
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 168 (216)
T TIGR00960 89 HRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGN 168 (216)
T ss_pred ccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 1122222222211 111 1122334567788888888 56778899999999997665 444555555
Q ss_pred CCHHHHHH
Q 016864 201 LDLDTVKA 208 (381)
Q Consensus 201 l~~~~v~~ 208 (381)
+|......
T Consensus 169 LD~~~~~~ 176 (216)
T TIGR00960 169 LDPELSRD 176 (216)
T ss_pred CCHHHHHH
Confidence 55544443
No 201
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.47 E-value=5.6e-13 Score=116.21 Aligned_cols=83 Identities=22% Similarity=0.237 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+.++.+..- ...+..|+.+...-.+.+++ ..+.++||||....... . ...++.+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-----~--~~~~~~~ 73 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL-----R--PLSYPQT 73 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhh-----h--hhhcCCC
Confidence 5899999999999999999986432 23343443333222445555 46789999996443211 1 1245789
Q ss_pred chhHHHHhcCCCh
Q 016864 144 NCILIVLDAIKPI 156 (381)
Q Consensus 144 d~il~vvd~~~~~ 156 (381)
|++++|+|.+++.
T Consensus 74 d~~ilv~d~~~~~ 86 (174)
T cd01871 74 DVFLICFSLVSPA 86 (174)
T ss_pred CEEEEEEECCCHH
Confidence 9999999998764
No 202
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.47 E-value=4.7e-13 Score=118.24 Aligned_cols=82 Identities=24% Similarity=0.282 Sum_probs=54.5
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|.+|||||||++.+++...+ ..+..|..+.....+..++ ..+.++||+|....... .. ...+.+|
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l-----~~--~~~~~a~ 73 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP-QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRL-----RS--LSYADTD 73 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccc-----cc--ccccCCC
Confidence 7999999999999999999876433 2233332222233444555 46789999996442110 11 1357899
Q ss_pred hhHHHHhcCCCh
Q 016864 145 CILIVLDAIKPI 156 (381)
Q Consensus 145 ~il~vvd~~~~~ 156 (381)
++++|.|.+++.
T Consensus 74 ~~ilv~dv~~~~ 85 (189)
T cd04134 74 VIMLCFSVDSPD 85 (189)
T ss_pred EEEEEEECCCHH
Confidence 999999988764
No 203
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.47 E-value=4.9e-13 Score=116.67 Aligned_cols=149 Identities=25% Similarity=0.261 Sum_probs=99.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|.++|++||||||+++.|...... . +..|.......+.+++..+.++|.+|-....+ ..-..+..+|+
T Consensus 15 ~~ililGl~~sGKTtll~~l~~~~~~--~-~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~-------~w~~y~~~~~~ 84 (175)
T PF00025_consen 15 IKILILGLDGSGKTTLLNRLKNGEIS--E-TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRP-------LWKSYFQNADG 84 (175)
T ss_dssp EEEEEEESTTSSHHHHHHHHHSSSEE--E-EEEESSEEEEEEEETTEEEEEEEESSSGGGGG-------GGGGGHTTESE
T ss_pred EEEEEECCCccchHHHHHHhhhcccc--c-cCcccccccceeeeCcEEEEEEeccccccccc-------cceeeccccce
Confidence 69999999999999999999864321 1 22245556667888999999999999644321 11124578999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|++++.. ......+| ..++..-
T Consensus 85 iIfVvDssd~~~-l~e~~~~L----------------------------------------~~ll~~~------------ 111 (175)
T PF00025_consen 85 IIFVVDSSDPER-LQEAKEEL----------------------------------------KELLNDP------------ 111 (175)
T ss_dssp EEEEEETTGGGG-HHHHHHHH----------------------------------------HHHHTSG------------
T ss_pred eEEEEeccccee-ecccccch----------------------------------------hhhcchh------------
Confidence 999999987632 11111111 1111110
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcCC---HHHHHHH---hcC-----CCeeeecccccccHHHHHHHHHHH
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQIT---LEELEIL---DKL-----PHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~---~~~l~~l---~~~-----~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
....+|+++++||.|+.. .+++... ... ..++.+||.+|.|+.+.++++.+.
T Consensus 112 ------------~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 112 ------------ELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp ------------GGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ------------hcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 011379999999999874 3444321 111 236789999999999999998764
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.47 E-value=3.5e-13 Score=137.82 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=66.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccc----------------cccccceeeeecEEEEEcCEEeeecCcccccccccC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEV----------------ASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD 128 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~----------------~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~ 128 (381)
..+|+++|+.++|||||+++|+.....+ ....+.|+......+.|++..+.++||||..+..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~-- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG-- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH--
Confidence 3689999999999999999998532111 1235788888888889999999999999986643
Q ss_pred CCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
......++.+|.+++|+|+..+
T Consensus 83 -----~~v~~~l~~aDg~ILVVDa~~G 104 (607)
T PRK10218 83 -----GEVERVMSMVDSVLLVVDAFDG 104 (607)
T ss_pred -----HHHHHHHHhCCEEEEEEecccC
Confidence 3344466899999999999875
No 205
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.47 E-value=5.1e-13 Score=120.13 Aligned_cols=153 Identities=25% Similarity=0.198 Sum_probs=96.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc-C--EEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR-G--AKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~-g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.+|+++|.+|||||||++.+++........|.++.+.....+.+. + ..+.++||||..... ......+++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 75 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR-------SITRSYYRN 75 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH-------HHHHHHhcC
Confidence 589999999999999999999765432223433445444455553 3 468899999964321 111234588
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|.+++.. .+.+.. ++..+.
T Consensus 76 ~d~iilv~D~~~~~S-f~~l~~--------------------------------------------~~~~i~-------- 102 (211)
T cd04111 76 SVGVLLVFDITNRES-FEHVHD--------------------------------------------WLEEAR-------- 102 (211)
T ss_pred CcEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHHH--------
Confidence 999999999987632 111111 111110
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
+... ....|.++|.||+|+... ++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 103 ----------~~~~--~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 103 ----------SHIQ--PHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred ----------HhcC--CCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0000 002578999999998642 22233322 24688999999999999999887654
No 206
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.47 E-value=4.9e-14 Score=121.24 Aligned_cols=143 Identities=22% Similarity=0.225 Sum_probs=106.8
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
++++++.. +..|||+|||||||||.|++++|...+ ..|.+.+++..++-. ....-+..|+++..
T Consensus 22 ~Vsl~v~~--GEiVGLLGPNGAGKTT~Fymi~Glv~~-----------d~G~i~ld~~diT~l---Pm~~RArlGigYLp 85 (243)
T COG1137 22 DVSLEVNS--GEIVGLLGPNGAGKTTTFYMIVGLVRP-----------DSGKILLDDEDITKL---PMHKRARLGIGYLP 85 (243)
T ss_pred eeeEEEcC--CcEEEEECCCCCCceeEEEEEEEEEec-----------CCceEEECCcccccC---ChHHHhhcCccccc
Confidence 45555554 489999999999999999999999888 999999999877654 33445566777777
Q ss_pred hhhcccCCcch---hHHHHhcCC--C--hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecc
Q 016864 135 QVISTARTCNC---ILIVLDAIK--P--ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 135 ~~~~~~~~~d~---il~vvd~~~--~--~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
|..+.++..++ +..|+.... . ..+...+.+.|+.|.+ -.+.+-..||+|++.|..|+ +.+||
T Consensus 86 QE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDE 165 (243)
T COG1137 86 QEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDE 165 (243)
T ss_pred ccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecC
Confidence 77777776666 444444433 1 2445567789999999 55667789999999999887 77799
Q ss_pred cCCCCCHHH---HHHHHHHh
Q 016864 197 TNTNLDLDT---VKAICSEY 213 (381)
Q Consensus 197 ~~~~l~~~~---v~~~l~~~ 213 (381)
|+++.|+-. ++.++..+
T Consensus 166 PFAGVDPiaV~dIq~iI~~L 185 (243)
T COG1137 166 PFAGVDPIAVIDIQRIIKHL 185 (243)
T ss_pred CccCCCchhHHHHHHHHHHH
Confidence 999988754 44444444
No 207
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.47 E-value=1.6e-13 Score=138.61 Aligned_cols=110 Identities=25% Similarity=0.331 Sum_probs=73.0
Q ss_pred cEEEEEcCCCCchHHHHHHHh---cccccccc-------------------cccceeeeecEEEEEcCEEeeecCccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLT---GTFSEVAS-------------------YEFTTLTCIPGVITYRGAKIQLLDLPGII 123 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~---g~~~~~~~-------------------~~~tT~~~~~g~i~~~g~~i~l~DtpG~~ 123 (381)
.+|+|+|++|+|||||+++|+ |.....+. ..+.|+......+.|++..+.++||||..
T Consensus 11 Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~ 90 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCch
Confidence 699999999999999999995 33221111 12445555556688889999999999986
Q ss_pred ccccCCCcchhhhhcccCCcchhHHHHhcCCCh-HHHHHHHHHHHhcccccccCcCcccceeecc
Q 016864 124 EGAKDGKGRGRQVISTARTCNCILIVLDAIKPI-THKRLIEKELEGFGIRLNKQPPNLTFRKKDK 187 (381)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~-~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r 187 (381)
+.. ......++.+|.+++|+|+..+. .....+.......++ |..+..++.++
T Consensus 91 df~-------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~i-----Piiv~iNK~D~ 143 (526)
T PRK00741 91 DFS-------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDT-----PIFTFINKLDR 143 (526)
T ss_pred hhH-------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCC-----CEEEEEECCcc
Confidence 543 33444568899999999998763 333444444433333 44455555554
No 208
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.46 E-value=1.6e-13 Score=123.61 Aligned_cols=139 Identities=19% Similarity=0.206 Sum_probs=81.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.... .......++..+.
T Consensus 20 ~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~~q~ 87 (214)
T TIGR02673 20 DVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-----------SRGQVRIAGEDVNRLRGRQL-PLLRRRIGVVFQD 87 (214)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcccCCHHHH-HHHHhheEEEecC
Confidence 33444444489999999999999999999998777 78999998876542211000 0000111111111
Q ss_pred hcccCCcch---hHHHHhc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNC---ILIVLDA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~---il~vvd~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
.......++ +.+.... ..+....+.+.+.++.+++ ...+.+..||+|+++|..++ +.+|||+++
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~ 167 (214)
T TIGR02673 88 FRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGN 167 (214)
T ss_pred hhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence 111222222 2211111 1122334567788888888 45778899999999997665 444555555
Q ss_pred CCHHHHH
Q 016864 201 LDLDTVK 207 (381)
Q Consensus 201 l~~~~v~ 207 (381)
+|.....
T Consensus 168 LD~~~~~ 174 (214)
T TIGR02673 168 LDPDLSE 174 (214)
T ss_pred CCHHHHH
Confidence 5554443
No 209
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.46 E-value=6.2e-13 Score=117.22 Aligned_cols=151 Identities=20% Similarity=0.137 Sum_probs=92.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+++++....+ ..+..|+.+.....+.+++. .+.++||+|....... .. ..+..+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-----~~--~~~~~a 73 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP-EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL-----RP--LSYSKA 73 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEECCEEEEEEEEECCCChhcccc-----ch--hhcCCC
Confidence 48999999999999999999743322 22333444444455666664 4678899996443211 11 134788
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|+++++.|...+.. .+.+.. .++..
T Consensus 74 ~~~llv~~i~~~~s-~~~~~~-------------------------------------------~~~~~----------- 98 (187)
T cd04129 74 HVILIGFAVDTPDS-LENVRT-------------------------------------------KWIEE----------- 98 (187)
T ss_pred CEEEEEEECCCHHH-HHHHHH-------------------------------------------HHHHH-----------
Confidence 99998888765431 111110 01111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH---------------HHHHHHh-c--CCCeeeecccccccHHHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL---------------EELEILD-K--LPHYCPVSAHLEWNLDGLLEK 285 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---------------~~l~~l~-~--~~~~v~vSa~~~~gl~~L~~~ 285 (381)
+.......|+|+|.||+|+... ++...+. . ..+++.+||+++.|++++++.
T Consensus 99 -----------i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 167 (187)
T cd04129 99 -----------VRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEA 167 (187)
T ss_pred -----------HHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHH
Confidence 0000012699999999998531 1112221 2 236789999999999999999
Q ss_pred HHHHc
Q 016864 286 IWEYL 290 (381)
Q Consensus 286 i~~~l 290 (381)
+.+.+
T Consensus 168 l~~~~ 172 (187)
T cd04129 168 ATRAA 172 (187)
T ss_pred HHHHH
Confidence 98755
No 210
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.46 E-value=3.6e-13 Score=138.16 Aligned_cols=149 Identities=24% Similarity=0.292 Sum_probs=100.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc---------cc------cccceeeeecEEEEEc---C--EEeeecCccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV---------AS------YEFTTLTCIPGVITYR---G--AKIQLLDLPGIIEG 125 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~---------~~------~~~tT~~~~~g~i~~~---g--~~i~l~DtpG~~~~ 125 (381)
.+|+|+|++|+|||||+++|+.....+ .+ ..+.|++...-.+.|. + ..+.++||||..+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 589999999999999999997542111 11 2367777666666663 3 67899999999764
Q ss_pred ccCCCcchhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHH
Q 016864 126 AKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDT 205 (381)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~ 205 (381)
. ......++.+|++++|+|++++...... . .
T Consensus 84 ~-------~~v~~~l~~aD~aILVvDat~g~~~qt~-~-----------------------------------------~ 114 (595)
T TIGR01393 84 S-------YEVSRSLAACEGALLLVDAAQGIEAQTL-A-----------------------------------------N 114 (595)
T ss_pred H-------HHHHHHHHhCCEEEEEecCCCCCCHhHH-H-----------------------------------------H
Confidence 3 2333456889999999999876321110 0 0
Q ss_pred HHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCH--HH-HHHH---hcC--CCeeeecccccc
Q 016864 206 VKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL--EE-LEIL---DKL--PHYCPVSAHLEW 277 (381)
Q Consensus 206 v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~--~~-l~~l---~~~--~~~v~vSa~~~~ 277 (381)
+..++ . ...|.|+|+||+|+... +. .+.+ ... ..++++||+++.
T Consensus 115 ~~~~~-------------------------~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~ 166 (595)
T TIGR01393 115 VYLAL-------------------------E---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGI 166 (595)
T ss_pred HHHHH-------------------------H---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCC
Confidence 00000 0 02699999999998632 21 1222 222 247999999999
Q ss_pred cHHHHHHHHHHHcC
Q 016864 278 NLDGLLEKIWEYLN 291 (381)
Q Consensus 278 gl~~L~~~i~~~l~ 291 (381)
|+++|++.+.+.++
T Consensus 167 GI~~Lle~I~~~lp 180 (595)
T TIGR01393 167 GIEEILEAIVKRVP 180 (595)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999988765
No 211
>PLN03127 Elongation factor Tu; Provisional
Probab=99.45 E-value=2.3e-13 Score=135.07 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=64.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc------c----------ccccccceeeeecEEEEEcCEEeeecCcccccccccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS------E----------VASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG 129 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~------~----------~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~ 129 (381)
.+|+++|+.++|||||+++|++... . ....+++|++...-.+..++.++.++||||+.+.
T Consensus 62 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f---- 137 (447)
T PLN03127 62 VNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY---- 137 (447)
T ss_pred EEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch----
Confidence 7899999999999999999984321 0 1123799999877777777889999999998542
Q ss_pred CcchhhhhcccCCcchhHHHHhcCCC
Q 016864 130 KGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 130 ~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
...+...+..+|++++|+|+..+
T Consensus 138 ---~~~~~~g~~~aD~allVVda~~g 160 (447)
T PLN03127 138 ---VKNMITGAAQMDGGILVVSAPDG 160 (447)
T ss_pred ---HHHHHHHHhhCCEEEEEEECCCC
Confidence 34555556779999999999765
No 212
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=3.9e-13 Score=121.89 Aligned_cols=137 Identities=21% Similarity=0.242 Sum_probs=91.8
Q ss_pred eEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeee-------cCcccccccccCCCc
Q 016864 59 DVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQL-------LDLPGIIEGAKDGKG 131 (381)
Q Consensus 59 ~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l-------~DtpG~~~~~~~~~~ 131 (381)
++....+..++|+|+||||||||++.|+|...| ..|.+.++|.++.. .-..|++-+.+.
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p-----------~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd--- 89 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP-----------TSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPD--- 89 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC-----------CCCEEEECCeeccchhhHHHhhcceEEEEECcc---
Confidence 344444489999999999999999999999988 77888888876542 223455444332
Q ss_pred chhhhhcccCCcchhHHHHhcCCC-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 132 RGRQVISTARTCNCILIVLDAIKP-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 132 ~~~~~~~~~~~~d~il~vvd~~~~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
.|++...-.-|+.+-.....-+ .+-.+++.+.|+.+++ ..++.+..||+|+++|.+++ +.+|||++
T Consensus 90 --~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta 167 (235)
T COG1122 90 --DQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167 (235)
T ss_pred --cccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCC
Confidence 2222111111111111111112 3345678888888888 67889999999999999887 77788888
Q ss_pred CCCHHHHHHHHH
Q 016864 200 NLDLDTVKAICS 211 (381)
Q Consensus 200 ~l~~~~v~~~l~ 211 (381)
++|....+.+++
T Consensus 168 ~LD~~~~~~l~~ 179 (235)
T COG1122 168 GLDPKGRRELLE 179 (235)
T ss_pred CCCHHHHHHHHH
Confidence 888876665544
No 213
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.45 E-value=7.8e-13 Score=117.94 Aligned_cols=137 Identities=19% Similarity=0.159 Sum_probs=103.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++++|++||||||++++|.+...| +.|.+.++|.++.-+|..-++. .+|+.-|.
T Consensus 19 ~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep-----------t~G~I~i~g~~i~~~d~~~LRr----~IGYviQq 83 (309)
T COG1125 19 DVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP-----------TSGEILIDGEDISDLDPVELRR----KIGYVIQQ 83 (309)
T ss_pred eeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC-----------CCceEEECCeecccCCHHHHHH----hhhhhhhh
Confidence 34444445589999999999999999999998888 9999999999887776554433 34566666
Q ss_pred hcccCCcchhHHHH---h--cCCChHHHHHHHHHHHhccc----ccccCcCcccceeeccccce---------eeecccC
Q 016864 137 ISTARTCNCILIVL---D--AIKPITHKRLIEKELEGFGI----RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 137 ~~~~~~~d~il~vv---d--~~~~~~~~~~i~~~l~~~~~----~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
..++++.++.-.+. . ..+...-.+++.+.|..+++ ...++|..||+|++||.|++ +.+|||+
T Consensus 84 igLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPF 163 (309)
T COG1125 84 IGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPF 163 (309)
T ss_pred cccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCc
Confidence 67777777743322 1 11234456678889999998 56789999999999999886 7779999
Q ss_pred CCCCHHHHHH
Q 016864 199 TNLDLDTVKA 208 (381)
Q Consensus 199 ~~l~~~~v~~ 208 (381)
..+|+=.-.+
T Consensus 164 gALDpI~R~~ 173 (309)
T COG1125 164 GALDPITRKQ 173 (309)
T ss_pred cccChhhHHH
Confidence 9998854433
No 214
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.44 E-value=3.5e-13 Score=121.41 Aligned_cols=142 Identities=24% Similarity=0.241 Sum_probs=84.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+-... .......++..+.
T Consensus 19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~i~~v~q~ 86 (214)
T cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-----------TSGTIRVNGQDVSDLRGRAI-PYLRRKIGVVFQD 86 (214)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcccCCHHHH-HHHHHheEEEecC
Confidence 34444444589999999999999999999998777 78999998876542210000 0000111111221
Q ss_pred hcccCCcchh---HHHHhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCI---LIVLDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~i---l~vvd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
.......++. .+..... ......+.+.+.++.+++ ..++.+..||+|+++|..++ +.+|||+++
T Consensus 87 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 166 (214)
T cd03292 87 FRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGN 166 (214)
T ss_pred chhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 1122222332 2111111 112234466778888888 45778899999999997765 555666666
Q ss_pred CCHHHHHHHH
Q 016864 201 LDLDTVKAIC 210 (381)
Q Consensus 201 l~~~~v~~~l 210 (381)
+|......++
T Consensus 167 LD~~~~~~~~ 176 (214)
T cd03292 167 LDPDTTWEIM 176 (214)
T ss_pred CCHHHHHHHH
Confidence 6665544443
No 215
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.44 E-value=4.1e-13 Score=137.45 Aligned_cols=83 Identities=24% Similarity=0.376 Sum_probs=65.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc---ccc---c----------cccccceeeeecEEEEEcCEEeeecCcccccccccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT---FSE---V----------ASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG 129 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~---~~~---~----------~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~ 129 (381)
+.|+++|+.++|||||+++|+.. ... + ....+.|+......+.|++..+.++||||..+..
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~--- 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG--- 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH---
Confidence 58999999999999999999742 111 1 1134788888888899999999999999986643
Q ss_pred CcchhhhhcccCCcchhHHHHhcCCC
Q 016864 130 KGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 130 ~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
......++.+|.+++|+|+..+
T Consensus 79 ----~ev~~~l~~aD~alLVVDa~~G 100 (594)
T TIGR01394 79 ----GEVERVLGMVDGVLLLVDASEG 100 (594)
T ss_pred ----HHHHHHHHhCCEEEEEEeCCCC
Confidence 3445567889999999999765
No 216
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.44 E-value=8.2e-13 Score=116.01 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=56.1
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccce-eeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTT-LTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT-~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
+|+++|.+|||||||++.+.+.... ..+..|. .+.....+.+++ ..+.++||+|...... -....++++
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~-------~~~~~~~~a 73 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN-------MLPLVCNDA 73 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH-------hhHHHCcCC
Confidence 7899999999999999999765432 2333322 233334566666 4678999999644321 111246899
Q ss_pred chhHHHHhcCCCh
Q 016864 144 NCILIVLDAIKPI 156 (381)
Q Consensus 144 d~il~vvd~~~~~ 156 (381)
|++++|+|.+++.
T Consensus 74 ~~iilv~D~t~~~ 86 (182)
T cd04128 74 VAILFMFDLTRKS 86 (182)
T ss_pred CEEEEEEECcCHH
Confidence 9999999998763
No 217
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.44 E-value=5.8e-13 Score=120.65 Aligned_cols=82 Identities=22% Similarity=0.164 Sum_probs=51.8
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccc--------------cccceee------------------------eecEEEE
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVAS--------------YEFTTLT------------------------CIPGVIT 108 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~--------------~~~tT~~------------------------~~~g~i~ 108 (381)
+|+++|.+++|||||+++++......+. ..+.|.. +....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999842211000 0111211 1112234
Q ss_pred EcCEEeeecCcccccccccCCCcchhhhhccc--CCcchhHHHHhcCCC
Q 016864 109 YRGAKIQLLDLPGIIEGAKDGKGRGRQVISTA--RTCNCILIVLDAIKP 155 (381)
Q Consensus 109 ~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~--~~~d~il~vvd~~~~ 155 (381)
..+..+.++||||..... ..+...+ ..+|++++|+|+..+
T Consensus 81 ~~~~~i~liDtpG~~~~~-------~~~~~~~~~~~~D~~llVvda~~g 122 (224)
T cd04165 81 KSSKLVTFIDLAGHERYL-------KTTLFGLTGYAPDYAMLVVAANAG 122 (224)
T ss_pred eCCcEEEEEECCCcHHHH-------HHHHHhhcccCCCEEEEEEECCCC
Confidence 457789999999986543 3333333 368999999998765
No 218
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.44 E-value=3.5e-13 Score=123.25 Aligned_cols=123 Identities=19% Similarity=0.213 Sum_probs=74.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+... ........++..|.
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~-~~~~~~~i~~v~q~ 85 (235)
T cd03261 18 GVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-----------DSGEVLIDGEDISGLSEAE-LYRLRRRMGMLFQS 85 (235)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccChhh-HHHHhcceEEEccC
Confidence 33444444589999999999999999999998877 7899999887654322100 00001112222222
Q ss_pred hcccCCcchhHHHH---hc---CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 137 ISTARTCNCILIVL---DA---IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 137 ~~~~~~~d~il~vv---d~---~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
.......++.-.+. .. .......+.+.+.++.+++ ...+++..||+|+++|..++
T Consensus 86 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 86 GALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALA 148 (235)
T ss_pred cccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 22222223322221 11 1112234456778888888 45788899999999996665
No 219
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.44 E-value=2.9e-13 Score=113.71 Aligned_cols=142 Identities=23% Similarity=0.219 Sum_probs=107.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
++++.+.. +..|+|||++|+|||||+-.|+|.+.+ ..|.+.+-|.++.-.|--+.-.......++..
T Consensus 28 ~V~L~v~~--Ge~vaiVG~SGSGKSTLl~vlAGLd~~-----------ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 28 GVELVVKR--GETVAIVGPSGSGKSTLLAVLAGLDDP-----------SSGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred cceEEecC--CceEEEEcCCCCcHHhHHHHHhcCCCC-----------CCceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 45555544 489999999999999999999999988 89999998887766665444433344556677
Q ss_pred hhhcccCCcchhHHHH-----hcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIVL-----DAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv-----d~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|.+.++++.+++..|. +.............+|+..|+ .+..+|..||+|++||..++ +..|||+
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPT 174 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPT 174 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCC
Confidence 7777888888876653 221123345556788999998 89999999999999998886 6668888
Q ss_pred CCCCHHHHHHH
Q 016864 199 TNLDLDTVKAI 209 (381)
Q Consensus 199 ~~l~~~~v~~~ 209 (381)
.++|.++-.++
T Consensus 175 GNLD~~Tg~~i 185 (228)
T COG4181 175 GNLDRATGDKI 185 (228)
T ss_pred CCcchhHHHHH
Confidence 88887665544
No 220
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.44 E-value=3e-13 Score=116.70 Aligned_cols=81 Identities=20% Similarity=0.207 Sum_probs=55.8
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchh
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCI 146 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 146 (381)
.|+++|.+|||||||++.+++.... ..+..| .......+...+..+.++||||..... ......++++|++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~-~~~~pt-~g~~~~~i~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ad~i 71 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL-ESVVPT-TGFNSVAIPTQDAIMELLEIGGSQNLR-------KYWKRYLSGSQGL 71 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc-cccccc-CCcceEEEeeCCeEEEEEECCCCcchh-------HHHHHHHhhCCEE
Confidence 3789999999999999999976432 222222 222233455667889999999964321 1122346899999
Q ss_pred HHHHhcCCCh
Q 016864 147 LIVLDAIKPI 156 (381)
Q Consensus 147 l~vvd~~~~~ 156 (381)
++|+|.+++.
T Consensus 72 i~V~D~t~~~ 81 (164)
T cd04162 72 IFVVDSADSE 81 (164)
T ss_pred EEEEECCCHH
Confidence 9999988753
No 221
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.43 E-value=4.1e-13 Score=127.36 Aligned_cols=139 Identities=19% Similarity=0.146 Sum_probs=88.4
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.- +... .....+...
T Consensus 11 ~vs~~i~--~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~-~~~~----~~~~i~~~~ 72 (302)
T TIGR01188 11 GVNFKVR--EGEVFGFLGPNGAGKTTTIRMLTTLLRP-----------TSGTARVAGYDVVR-EPRK----VRRSIGIVP 72 (302)
T ss_pred eeeEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccc-CHHH----HHhhcEEec
Confidence 3445554 4489999999999999999999999877 88999999876531 1000 011122222
Q ss_pred hhhcccCCcchhHHH---HhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIV---LDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|........++.-.+ .... ......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||+
T Consensus 73 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 222222233332221 1111 112234467788888988 56888999999999998776 6667777
Q ss_pred CCCCHHHHHHHHH
Q 016864 199 TNLDLDTVKAICS 211 (381)
Q Consensus 199 ~~l~~~~v~~~l~ 211 (381)
+++|......+..
T Consensus 153 ~gLD~~~~~~l~~ 165 (302)
T TIGR01188 153 TGLDPRTRRAIWD 165 (302)
T ss_pred cCCCHHHHHHHHH
Confidence 7777766554433
No 222
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.43 E-value=2.8e-13 Score=112.36 Aligned_cols=134 Identities=28% Similarity=0.321 Sum_probs=89.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|.+||+.|||||||.++|.|...... ..-.+.|.+ ..+||||-+-..+ .+.+..+....++|+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~---------KTq~i~~~~---~~IDTPGEyiE~~---~~y~aLi~ta~dad~ 66 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK---------KTQAIEYYD---NTIDTPGEYIENP---RFYHALIVTAQDADV 66 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC---------ccceeEecc---cEEECChhheeCH---HHHHHHHHHHhhCCE
Confidence 4899999999999999999999764310 111234433 3489999653321 123444455679999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|.|+..+... .++.+
T Consensus 67 V~ll~dat~~~~~-----------------~pP~f--------------------------------------------- 84 (143)
T PF10662_consen 67 VLLLQDATEPRSV-----------------FPPGF--------------------------------------------- 84 (143)
T ss_pred EEEEecCCCCCcc-----------------CCchh---------------------------------------------
Confidence 9999999876310 00000
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcC-CHHHHHH----H--hcCCCeeeecccccccHHHHHHHHH
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQI-TLEELEI----L--DKLPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~-~~~~l~~----l--~~~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
. ..+.+|+|-|++|+|+. +.+.++. + .....++.+|+.+++|+++|.+.+-
T Consensus 85 ----------a-~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 85 ----------A-SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred ----------h-cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 0 11237999999999999 3333322 1 2345689999999999999998763
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.43 E-value=4.1e-13 Score=131.93 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=63.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc----------------cccccccceeeeecEEEEEcCEEeeecCcccccccccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS----------------EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG 129 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~----------------~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~ 129 (381)
.+|+++|++|+|||||+++|++... +.....++|++.....+.+++.++.++||||..+.
T Consensus 13 ~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f---- 88 (396)
T PRK12735 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY---- 88 (396)
T ss_pred EEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH----
Confidence 7899999999999999999986211 01124688888766666667789999999998543
Q ss_pred CcchhhhhcccCCcchhHHHHhcCCC
Q 016864 130 KGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 130 ~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
...+...+..+|++++|+|+..+
T Consensus 89 ---~~~~~~~~~~aD~~llVvda~~g 111 (396)
T PRK12735 89 ---VKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred ---HHHHHhhhccCCEEEEEEECCCC
Confidence 35555667889999999999764
No 224
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.43 E-value=2.7e-13 Score=133.61 Aligned_cols=149 Identities=24% Similarity=0.272 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc---ccccccceeeeecEEEE--------------------------EcCEEeee
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE---VASYEFTTLTCIPGVIT--------------------------YRGAKIQL 116 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~---~~~~~~tT~~~~~g~i~--------------------------~~g~~i~l 116 (381)
.+|+++|++|+|||||+++|++.... ..-..+.|++.....+. ..+..+.+
T Consensus 5 ~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 84 (406)
T TIGR03680 5 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSF 84 (406)
T ss_pred EEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEE
Confidence 68999999999999999999875321 11123445443321110 11467899
Q ss_pred cCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCCh--HHHHHHHHHHHhcccccccCcCcccceeeccccceeee
Q 016864 117 LDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPI--THKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTS 194 (381)
Q Consensus 117 ~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~--~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~ 194 (381)
+||||..+.. ..+...+..+|++++|+|+.++. .+...
T Consensus 85 iDtPGh~~f~-------~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e--------------------------------- 124 (406)
T TIGR03680 85 VDAPGHETLM-------ATMLSGAALMDGALLVIAANEPCPQPQTKE--------------------------------- 124 (406)
T ss_pred EECCCHHHHH-------HHHHHHHHHCCEEEEEEECCCCccccchHH---------------------------------
Confidence 9999975542 44555567889999999998653 11111
Q ss_pred cccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----HHHh----c--
Q 016864 195 TVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----EILD----K-- 264 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~l~----~-- 264 (381)
.+ .++..++ .+|+++++||+|+...++. +.+. .
T Consensus 125 ----------~l-~~l~~~g--------------------------i~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~ 167 (406)
T TIGR03680 125 ----------HL-MALEIIG--------------------------IKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTV 167 (406)
T ss_pred ----------HH-HHHHHcC--------------------------CCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcc
Confidence 00 0111110 1478999999999865432 2221 1
Q ss_pred --CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 265 --LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 265 --~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
..+++++||.++.|+++|++.+...++
T Consensus 168 ~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 168 AENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred cCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 236899999999999999999987654
No 225
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.43 E-value=7.5e-13 Score=117.32 Aligned_cols=165 Identities=17% Similarity=0.207 Sum_probs=113.3
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEee--ecCcccccccccCCCcc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQ--LLDLPGIIEGAKDGKGR 132 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~--l~DtpG~~~~~~~~~~~ 132 (381)
+.+|.+. .+...|++|+|||||||.|+.|.|...+ +.|.|.|+|.++. ..|--|+.+..
T Consensus 20 ~isf~v~--~G~i~GllG~NGAGKTTtfRmILglle~-----------~~G~I~~~g~~~~~~~~~rIGyLPEE------ 80 (300)
T COG4152 20 NISFEVP--PGEIFGLLGPNGAGKTTTFRMILGLLEP-----------TEGEITWNGGPLSQEIKNRIGYLPEE------ 80 (300)
T ss_pred ceeeeec--CCeEEEeecCCCCCccchHHHHhccCCc-----------cCceEEEcCcchhhhhhhhcccChhh------
Confidence 4445444 4589999999999999999999999888 9999999997654 33344544322
Q ss_pred hhhhhcccCCc---chhHHHHhcCC-C-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecc
Q 016864 133 GRQVISTARTC---NCILIVLDAIK-P-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 133 ~~~~~~~~~~~---d~il~vvd~~~-~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
..+.+.. |.+.++-.... + .+-...+..+|+++++ ...+++..||-|.+|+.... +++|+
T Consensus 81 ----RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDE 156 (300)
T COG4152 81 ----RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDE 156 (300)
T ss_pred ----hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecC
Confidence 1222333 44445443322 2 4456678889999998 78889999999999885432 56666
Q ss_pred cCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHHhcCCCeeeeccccc
Q 016864 197 TNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEILDKLPHYCPVSAHLE 276 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l~~~~~~v~vSa~~~ 276 (381)
|++++|+-.++.+ + +.+..+.+...+|++|+|.-
T Consensus 157 PFSGLDPVN~elL-k---------------------------------------------~~I~~lk~~GatIifSsH~M 190 (300)
T COG4152 157 PFSGLDPVNVELL-K---------------------------------------------DAIFELKEEGATIIFSSHRM 190 (300)
T ss_pred CccCCChhhHHHH-H---------------------------------------------HHHHHHHhcCCEEEEecchH
Confidence 7666666444321 1 11223345667899999999
Q ss_pred ccHHHHHHHHHH
Q 016864 277 WNLDGLLEKIWE 288 (381)
Q Consensus 277 ~gl~~L~~~i~~ 288 (381)
+.+++||+.+.=
T Consensus 191 e~vEeLCD~llm 202 (300)
T COG4152 191 EHVEELCDRLLM 202 (300)
T ss_pred HHHHHHhhhhhe
Confidence 999999998754
No 226
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.43 E-value=3.4e-13 Score=121.89 Aligned_cols=141 Identities=25% Similarity=0.257 Sum_probs=81.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+............+...+.
T Consensus 22 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 90 (218)
T cd03255 22 GVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-----------TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQS 90 (218)
T ss_pred eeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC-----------CceeEEECCEehhhcchhHHHHHHhhcEEEEeec
Confidence 33444444589999999999999999999999877 7899999887654322100000000011111111
Q ss_pred hcccCCcch---hHHHHhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNC---ILIVLDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~---il~vvd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
.......++ +.+..... ......+.+.+.++.+++ ..++.+..||+|+++|..++ +.+|||+++
T Consensus 91 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~ 170 (218)
T cd03255 91 FNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGN 170 (218)
T ss_pred cccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCccc
Confidence 111122222 21111111 112234567788888888 45778899999999997665 445555555
Q ss_pred CCHHHHHH
Q 016864 201 LDLDTVKA 208 (381)
Q Consensus 201 l~~~~v~~ 208 (381)
+|......
T Consensus 171 LD~~~~~~ 178 (218)
T cd03255 171 LDSETGKE 178 (218)
T ss_pred CCHHHHHH
Confidence 55544433
No 227
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.43 E-value=6e-13 Score=127.88 Aligned_cols=138 Identities=20% Similarity=0.158 Sum_probs=86.3
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++.. +..+||+|+||||||||+++|+|...+ ..|.+.++|.++.-. + .......+...
T Consensus 59 ~is~~i~~--Gei~gLlGpNGaGKSTLl~~L~Gl~~p-----------~~G~i~i~G~~~~~~--~---~~~~~~ig~v~ 120 (340)
T PRK13536 59 GLSFTVAS--GECFGLLGPNGAGKSTIARMILGMTSP-----------DAGKITVLGVPVPAR--A---RLARARIGVVP 120 (340)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHHcCCCC-----------CceEEEECCEECCcc--h---HHHhccEEEEe
Confidence 44555544 489999999999999999999999888 889999999765311 0 00111122222
Q ss_pred hhhcccCCcchhHHH--Hh-cC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIV--LD-AI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~v--vd-~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
+........++.-++ .. .. ......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||+
T Consensus 121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 222222222332221 11 11 112233456677888888 47888999999999998776 5666777
Q ss_pred CCCCHHHHHHHH
Q 016864 199 TNLDLDTVKAIC 210 (381)
Q Consensus 199 ~~l~~~~v~~~l 210 (381)
+++|......++
T Consensus 201 ~gLD~~~r~~l~ 212 (340)
T PRK13536 201 TGLDPHARHLIW 212 (340)
T ss_pred CCCCHHHHHHHH
Confidence 777766554443
No 228
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.43 E-value=2e-13 Score=137.96 Aligned_cols=110 Identities=23% Similarity=0.290 Sum_probs=73.4
Q ss_pred cEEEEEcCCCCchHHHHHHHh---ccccccc-------------c------cccceeeeecEEEEEcCEEeeecCccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLT---GTFSEVA-------------S------YEFTTLTCIPGVITYRGAKIQLLDLPGII 123 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~---g~~~~~~-------------~------~~~tT~~~~~g~i~~~g~~i~l~DtpG~~ 123 (381)
.+|+|+|++|+|||||+++|+ |.....+ + ..+.|+......+.|++..+.++||||..
T Consensus 12 RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~ 91 (527)
T TIGR00503 12 RTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHE 91 (527)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChh
Confidence 699999999999999999984 3321111 1 12455555666778889999999999985
Q ss_pred ccccCCCcchhhhhcccCCcchhHHHHhcCCC-hHHHHHHHHHHHhcccccccCcCcccceeecc
Q 016864 124 EGAKDGKGRGRQVISTARTCNCILIVLDAIKP-ITHKRLIEKELEGFGIRLNKQPPNLTFRKKDK 187 (381)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~-~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r 187 (381)
+.. ......++.+|.+++|+|+... ....+.+...+...+ .+..+.+++.++
T Consensus 92 df~-------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~-----~PiivviNKiD~ 144 (527)
T TIGR00503 92 DFS-------EDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRD-----TPIFTFMNKLDR 144 (527)
T ss_pred hHH-------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcC-----CCEEEEEECccc
Confidence 432 3345566889999999999875 333344444443322 244555555555
No 229
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=7.1e-13 Score=135.39 Aligned_cols=165 Identities=16% Similarity=0.194 Sum_probs=101.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE-EeeecCcccccccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA-KIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~-~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
++++....+.+++|+|+||||||||+++|+|...+ ..|.+.+++. .+.++ .+... ..
T Consensus 337 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~~i~~~------~q~~~-----~~ 394 (530)
T PRK15064 337 NLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP-----------DSGTVKWSENANIGYY------AQDHA-----YD 394 (530)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCceEEEEE------ccccc-----cc
Confidence 34444445589999999999999999999998777 7898888763 23322 21100 00
Q ss_pred hhcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHH
Q 016864 136 VISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~ 212 (381)
+ .....+.-.+..........+.+...|+.+++ ..++++..||+|+++|..++ .
T Consensus 395 ~---~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la--------------------~ 451 (530)
T PRK15064 395 F---ENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFG--------------------K 451 (530)
T ss_pred C---CCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHH--------------------H
Confidence 0 00111111111000111223456778888887 46788999999999995544 2
Q ss_pred hcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH-HHHhcCCCeeeecccccccHHHHHHHHH
Q 016864 213 YRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL-EILDKLPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 213 ~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l-~~l~~~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
..+.+++++++|||| |.+|..+.+.+ +.+.++..+|++++|+...+..++++++
T Consensus 452 al~~~p~lllLDEPt---------------------~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~ 506 (530)
T PRK15064 452 LMMQKPNVLVMDEPT---------------------NHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRII 506 (530)
T ss_pred HHhcCCCEEEEcCCC---------------------CCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 234456667777777 66776655554 3334455678888999877666655443
No 230
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.43 E-value=4.9e-13 Score=120.43 Aligned_cols=134 Identities=20% Similarity=0.247 Sum_probs=80.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeee-cCcccccccccCCCcch
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQL-LDLPGIIEGAKDGKGRG 133 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l-~DtpG~~~~~~~~~~~~ 133 (381)
+.++++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.- ....|++.+...
T Consensus 17 ~isl~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~i~~v~q~~~----- 78 (213)
T cd03235 17 DVSFEVK--PGEFLAIVGPNGAGKSTLLKAILGLLKP-----------TSGSIRVFGKPLEKERKRIGYVPQRRS----- 78 (213)
T ss_pred cceeEEc--CCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCccHHHHHhheEEeccccc-----
Confidence 3444444 4489999999999999999999998877 78999998865420 000122211100
Q ss_pred hhhhcccCCcchhHHHHhcC---------CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------ee
Q 016864 134 RQVISTARTCNCILIVLDAI---------KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 134 ~~~~~~~~~~d~il~vvd~~---------~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
+......++.-.+.-.. ......+.+...++.+++ ..++++..||+|+++|..++ +.
T Consensus 79 ---~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 155 (213)
T cd03235 79 ---IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLL 155 (213)
T ss_pred ---cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 00000112221111100 112234567788888888 46788999999999997665 44
Q ss_pred ecccCCCCCHHHHHHH
Q 016864 194 STVTNTNLDLDTVKAI 209 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~~ 209 (381)
+|||++++|......+
T Consensus 156 lDEPt~~LD~~~~~~l 171 (213)
T cd03235 156 LDEPFAGVDPKTQEDI 171 (213)
T ss_pred EeCCcccCCHHHHHHH
Confidence 4555555555444433
No 231
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=2e-13 Score=141.97 Aligned_cols=180 Identities=23% Similarity=0.205 Sum_probs=112.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE-EeeecCcccccccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA-KIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~-~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
++++....+.++||+|+||||||||+++|+|...+ ..|.+.+++. .+.++...... ......+...+
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p-----------d~G~I~~~~~~~i~~~~q~~~~-~~~~~~~~v~~ 86 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLKNEISA-----------DGGSYTFPGNWQLAWVNQETPA-LPQPALEYVID 86 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEecCCCC-CCCCHHHHHHH
Confidence 34444444589999999999999999999998777 7898888653 23222110000 00000011111
Q ss_pred hhcccCCcc-------------hhHHH---HhcCCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccceeeecc
Q 016864 136 VISTARTCN-------------CILIV---LDAIKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGINFTSTV 196 (381)
Q Consensus 136 ~~~~~~~~d-------------~il~v---vd~~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~i~~~~ 196 (381)
....+.... .+..+ .+..........+...|..+|+ ..++++..||+|+++|..
T Consensus 87 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~------- 159 (638)
T PRK10636 87 GDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN------- 159 (638)
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH-------
Confidence 000000000 00000 1111111223467778888888 357889999999999944
Q ss_pred cCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHH-hcCCCeeeecccc
Q 016864 197 TNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEIL-DKLPHYCPVSAHL 275 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l-~~~~~~v~vSa~~ 275 (381)
|....+.+++++++|||| |++|..+..++..+ ..+..+|++++|+
T Consensus 160 -------------LA~aL~~~P~lLLLDEPt---------------------n~LD~~~~~~L~~~L~~~~~tviivsHd 205 (638)
T PRK10636 160 -------------LAQALICRSDLLLLDEPT---------------------NHLDLDAVIWLEKWLKSYQGTLILISHD 205 (638)
T ss_pred -------------HHHHHccCCCEEEEcCCC---------------------CcCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 334445677888889988 99998888887544 5566788899999
Q ss_pred cccHHHHHHHHHHH
Q 016864 276 EWNLDGLLEKIWEY 289 (381)
Q Consensus 276 ~~gl~~L~~~i~~~ 289 (381)
...++.+++.++.+
T Consensus 206 ~~~l~~~~d~i~~L 219 (638)
T PRK10636 206 RDFLDPIVDKIIHI 219 (638)
T ss_pred HHHHHHhcCEEEEE
Confidence 99999988877653
No 232
>PRK00049 elongation factor Tu; Reviewed
Probab=99.43 E-value=6.6e-13 Score=130.42 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=64.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc----------------ccccccceeeeecEEEEEcCEEeeecCcccccccccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE----------------VASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG 129 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~----------------~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~ 129 (381)
.+|+++|+.++|||||+++|++.... ..-.+++|++...-.+.+++.++.++||||+.+.
T Consensus 13 ~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f---- 88 (396)
T PRK00049 13 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY---- 88 (396)
T ss_pred EEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH----
Confidence 78999999999999999999873210 1125688998876666667889999999998543
Q ss_pred CcchhhhhcccCCcchhHHHHhcCCC
Q 016864 130 KGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 130 ~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
...+...+..+|++++|+|+..+
T Consensus 89 ---~~~~~~~~~~aD~~llVVDa~~g 111 (396)
T PRK00049 89 ---VKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred ---HHHHHhhhccCCEEEEEEECCCC
Confidence 24555567899999999999865
No 233
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.42 E-value=4.6e-13 Score=120.39 Aligned_cols=120 Identities=23% Similarity=0.223 Sum_probs=72.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.+.... ....++..+.
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~ 83 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-----------TSGEVLVDGKDLTKLSLKEL----RRKVGLVFQN 83 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEcccCCHHHH----HhhceEEecC
Confidence 34444444589999999999999999999998877 78999998876542211110 0111111111
Q ss_pred hc-ccCCcchhHHH---Hhc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 137 IS-TARTCNCILIV---LDA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 137 ~~-~~~~~d~il~v---vd~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
.. .+...++.-.+ ... .......+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 84 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 146 (211)
T cd03225 84 PDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIA 146 (211)
T ss_pred hhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 10 01112221111 111 1112233456778888888 46788999999999996665
No 234
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=5.9e-13 Score=124.22 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=83.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+........++..
T Consensus 42 ~is~~i~--~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p-----------~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~ 108 (269)
T cd03294 42 DVSLDVR--EGEIFVIMGLSGSGKSTLLRCINRLIEP-----------TSGKVLIDGQDIAAMSRKELRELRRKKISMVF 108 (269)
T ss_pred eeEEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccChhhhhhhhcCcEEEEe
Confidence 4445544 4489999999999999999999999877 78999998876532211110000001111222
Q ss_pred hhhcccCCcchhHHH---HhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIV---LDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
+........++.-.+ .... ......+.+.+.++.+++ ..++.+..||+|+++|..++ +.+|||+
T Consensus 109 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt 188 (269)
T cd03294 109 QSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAF 188 (269)
T ss_pred cCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 221122222332111 1111 112233456778888888 46888999999999997765 4455555
Q ss_pred CCCCHHHHHH
Q 016864 199 TNLDLDTVKA 208 (381)
Q Consensus 199 ~~l~~~~v~~ 208 (381)
+++|......
T Consensus 189 ~~LD~~~~~~ 198 (269)
T cd03294 189 SALDPLIRRE 198 (269)
T ss_pred ccCCHHHHHH
Confidence 5555544433
No 235
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=4.5e-13 Score=120.64 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=79.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.. .. ....+...+.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~--~~----~~~i~~v~q~ 80 (213)
T cd03259 18 DLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-----------DSGEILIDGRDVTGVP--PE----RRNIGMVFQD 80 (213)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcCcCc--hh----hccEEEEcCc
Confidence 33444444589999999999999999999998877 7899999887653111 00 0111111221
Q ss_pred hcccCCcchhHHH---HhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIV---LDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
.......++.-.+ .... ......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||+++
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 1122222222211 1111 112234456778888888 45778899999999996665 444455555
Q ss_pred CCHHHH
Q 016864 201 LDLDTV 206 (381)
Q Consensus 201 l~~~~v 206 (381)
+|....
T Consensus 161 LD~~~~ 166 (213)
T cd03259 161 LDAKLR 166 (213)
T ss_pred CCHHHH
Confidence 554433
No 236
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.42 E-value=5.6e-13 Score=119.99 Aligned_cols=139 Identities=18% Similarity=0.149 Sum_probs=82.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.+. .......++..
T Consensus 18 ~~s~~i~--~G~~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~--~~~~~~i~~~~ 82 (213)
T cd03262 18 GIDLTVK--KGEVVVIIGPSGSGKSTLLRCINLLEEP-----------DSGTIIIDGLKLTDDKKNI--NELRQKVGMVF 82 (213)
T ss_pred CceEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCccchhH--HHHHhcceEEe
Confidence 3444444 4489999999999999999999998877 7899999987653111000 00011112222
Q ss_pred hhhcccCCcchhHHHH------hcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 135 QVISTARTCNCILIVL------DAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv------d~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
+........++.-.+. .........+.+.+.++.+++ ..++++..||+|++++..++ +.+|||
T Consensus 83 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 162 (213)
T cd03262 83 QQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEP 162 (213)
T ss_pred cccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 2221222223322221 111122234556778888888 56888999999999997665 455566
Q ss_pred CCCCCHHHHHH
Q 016864 198 NTNLDLDTVKA 208 (381)
Q Consensus 198 ~~~l~~~~v~~ 208 (381)
++++|......
T Consensus 163 ~~~LD~~~~~~ 173 (213)
T cd03262 163 TSALDPELVGE 173 (213)
T ss_pred ccCCCHHHHHH
Confidence 66665544433
No 237
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.42 E-value=8.6e-13 Score=125.31 Aligned_cols=139 Identities=21% Similarity=0.190 Sum_probs=109.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++.. +..++|+||+||||||+|++|+|...| +.|.|.++|..+.- . +....+.++..
T Consensus 23 ~isl~i~~--Gef~~lLGPSGcGKTTlLR~IAGfe~p-----------~~G~I~l~G~~i~~--l----pp~kR~ig~VF 83 (352)
T COG3842 23 DISLDIKK--GEFVTLLGPSGCGKTTLLRMIAGFEQP-----------SSGEILLDGEDITD--V----PPEKRPIGMVF 83 (352)
T ss_pred cceeeecC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCC--C----Chhhcccceee
Confidence 45555555 389999999999999999999999999 99999999988753 2 33455677888
Q ss_pred hhhcccCCcchhHHHHhcC-----CC-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 135 QVISTARTCNCILIVLDAI-----KP-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~~-----~~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
|.++++++.++.-.|-=.- .+ .+..+++.+.|+..++ ...++|..||+|++||..++ +.+|||
T Consensus 84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEP 163 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCc
Confidence 9999999998865543211 12 2345688899999998 78889999999999999887 677999
Q ss_pred CCCCCHHHHHHHHHH
Q 016864 198 NTNLDLDTVKAICSE 212 (381)
Q Consensus 198 ~~~l~~~~v~~~l~~ 212 (381)
++++|...-..+-.+
T Consensus 164 lSaLD~kLR~~mr~E 178 (352)
T COG3842 164 LSALDAKLREQMRKE 178 (352)
T ss_pred ccchhHHHHHHHHHH
Confidence 999998765555443
No 238
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.42 E-value=1.9e-12 Score=113.08 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=96.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|+|||||+..+....- ...+..|..+...-.+.+++ ..+.++||+|..+... -....++++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f-~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~-------~~~~~~~~a 73 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR-------LRPLSYRGA 73 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC-CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc-------cchhhcCCC
Confidence 4799999999999999999986543 23344444333333455565 4678999999754321 111246899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|.|..++..- +.+. ..++..+.
T Consensus 74 ~~~ilvyd~~~~~Sf-~~~~-------------------------------------------~~w~~~i~--------- 100 (176)
T cd04133 74 DVFVLAFSLISRASY-ENVL-------------------------------------------KKWVPELR--------- 100 (176)
T ss_pred cEEEEEEEcCCHHHH-HHHH-------------------------------------------HHHHHHHH---------
Confidence 999999999876431 1110 11111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC---------------HHHHHHHhc-C--CCeeeecccccccHHHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT---------------LEELEILDK-L--PHYCPVSAHLEWNLDGLLEK 285 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~---------------~~~l~~l~~-~--~~~v~vSa~~~~gl~~L~~~ 285 (381)
......|+++|.||+|+.. .++...+.. . .+.+.+||+++.|++++++.
T Consensus 101 -------------~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~ 167 (176)
T cd04133 101 -------------HYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDA 167 (176)
T ss_pred -------------HhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHH
Confidence 0001269999999999843 122233322 2 24788999999999999999
Q ss_pred HHHHc
Q 016864 286 IWEYL 290 (381)
Q Consensus 286 i~~~l 290 (381)
+.+.+
T Consensus 168 ~~~~~ 172 (176)
T cd04133 168 AIKVV 172 (176)
T ss_pred HHHHH
Confidence 98754
No 239
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.42 E-value=1.6e-12 Score=117.67 Aligned_cols=152 Identities=15% Similarity=0.110 Sum_probs=92.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc--CEEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR--GAKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~--g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..+|+++|.+|||||||+++++.........|....+...-.+..+ ...+.++||||...... -.....+.
T Consensus 13 ~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 85 (219)
T PLN03071 13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIH 85 (219)
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhh-------hhHHHccc
Confidence 3799999999999999999976543221111111112222233333 35788999999754321 11123578
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|.+++..- +.+. .++..+.
T Consensus 86 ~~~~ilvfD~~~~~s~-~~i~--------------------------------------------~w~~~i~-------- 112 (219)
T PLN03071 86 GQCAIIMFDVTARLTY-KNVP--------------------------------------------TWHRDLC-------- 112 (219)
T ss_pred ccEEEEEEeCCCHHHH-HHHH--------------------------------------------HHHHHHH--------
Confidence 9999999999876321 1111 1111110
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH----HHHHHHh-cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL----EELEILD-KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~----~~l~~l~-~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. .....|+++|.||+|+... +.+.... ...+.+.+||+++.|++++++.+.+.+
T Consensus 113 ----------~----~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 113 ----------R----VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred ----------H----hCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 0 0012699999999998632 2221111 223578999999999999999988765
No 240
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.42 E-value=1.8e-12 Score=109.83 Aligned_cols=145 Identities=21% Similarity=0.231 Sum_probs=111.8
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeec-Ccccccccc-------
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLL-DLPGIIEGA------- 126 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~-DtpG~~~~~------- 126 (381)
+++++. ..+..|+|+|.+|+|||||+++|.-...| ..|.|..+|..+.+. |-.|-...+
T Consensus 24 GvSL~A--~~GdVisIIGsSGSGKSTfLRCiN~LE~P-----------~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r 90 (256)
T COG4598 24 GVSLQA--NAGDVISIIGSSGSGKSTFLRCINFLEKP-----------SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQR 90 (256)
T ss_pred ceeeec--CCCCEEEEecCCCCchhHHHHHHHhhcCC-----------CCceEEECCeEEEeeeCCCCCeeeCCHHHHHH
Confidence 444444 44489999999999999999999888778 899999999888764 333433222
Q ss_pred -cCCCcchhhhhcccCCcchhHHHHhcCC------ChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce------
Q 016864 127 -KDGKGRGRQVISTARTCNCILIVLDAIK------PITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN------ 191 (381)
Q Consensus 127 -~~~~~~~~~~~~~~~~~d~il~vvd~~~------~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~------ 191 (381)
....++..|.+++....+++-.|+.+.- ..+..+..+.+|.+.|+ ..+.+|..||+|++||..|+
T Consensus 91 ~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLame 170 (256)
T COG4598 91 LRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAME 170 (256)
T ss_pred HHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcC
Confidence 2234556676667778888888877631 23456677889999999 67789999999999999886
Q ss_pred ---eeecccCCCCCHHHHHHHHHH
Q 016864 192 ---FTSTVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 192 ---i~~~~~~~~l~~~~v~~~l~~ 212 (381)
+..|+|++.+|++.+..+|+-
T Consensus 171 P~vmLFDEPTSALDPElVgEVLkv 194 (256)
T COG4598 171 PEVMLFDEPTSALDPELVGEVLKV 194 (256)
T ss_pred CceEeecCCcccCCHHHHHHHHHH
Confidence 667899999999999888774
No 241
>PRK10908 cell division protein FtsE; Provisional
Probab=99.42 E-value=5.5e-13 Score=120.87 Aligned_cols=139 Identities=20% Similarity=0.159 Sum_probs=80.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.... .......++..+.
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~i~~~~q~ 87 (222)
T PRK10908 20 GVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-----------SAGKIWFSGHDITRLKNREV-PFLRRQIGMIFQD 87 (222)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEcccCChhHH-HHHHhheEEEecC
Confidence 33444444589999999999999999999998877 88999998876532211000 0000111111221
Q ss_pred hcccCCcchhHHHHh-----cCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIVLD-----AIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~vvd-----~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
.......++.-.+.. ...+....+.+.+.++.+++ ..++.+..||+|+++|..++ +.+|||+++
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 167 (222)
T PRK10908 88 HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGN 167 (222)
T ss_pred ccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 111122222222111 11122233456678888888 56788999999999996665 444555555
Q ss_pred CCHHHHH
Q 016864 201 LDLDTVK 207 (381)
Q Consensus 201 l~~~~v~ 207 (381)
+|.....
T Consensus 168 LD~~~~~ 174 (222)
T PRK10908 168 LDDALSE 174 (222)
T ss_pred CCHHHHH
Confidence 5544433
No 242
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.42 E-value=2.3e-12 Score=112.76 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=56.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++.+.+...+ ..+..|..+...-.+.+++ ..+.++||+|...... .....++++
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~-------~~~~~~~~a 73 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN-------VRPLCYPDS 73 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh-------cchhhcCCC
Confidence 48999999999999999999876433 3444443333333455665 4578999999643221 111245899
Q ss_pred chhHHHHhcCCCh
Q 016864 144 NCILIVLDAIKPI 156 (381)
Q Consensus 144 d~il~vvd~~~~~ 156 (381)
|++++|+|.+++.
T Consensus 74 ~~~ilvfdit~~~ 86 (178)
T cd04131 74 DAVLICFDISRPE 86 (178)
T ss_pred CEEEEEEECCChh
Confidence 9999999998764
No 243
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.42 E-value=6.2e-13 Score=130.01 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=94.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+........++..|.
T Consensus 46 ~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p-----------~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~ 114 (400)
T PRK10070 46 DASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP-----------TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQS 114 (400)
T ss_pred eEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-----------CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECC
Confidence 33444444489999999999999999999999887 8899999998764332211111001112222232
Q ss_pred hcccCCcchh---HHHHhc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCI---LIVLDA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~i---l~vvd~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
...+...++. .+.... .......+.+.+.++.+++ ..++++..||+|+++|.+++ +.+|||+++
T Consensus 115 ~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 115 FALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 2223333332 222111 1122334567788888988 56888999999999998886 788999999
Q ss_pred CCHHHHHHHHHH
Q 016864 201 LDLDTVKAICSE 212 (381)
Q Consensus 201 l~~~~v~~~l~~ 212 (381)
+|......+.+.
T Consensus 195 LD~~~r~~l~~~ 206 (400)
T PRK10070 195 LDPLIRTEMQDE 206 (400)
T ss_pred CCHHHHHHHHHH
Confidence 999876665443
No 244
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.42 E-value=6.3e-13 Score=120.32 Aligned_cols=135 Identities=17% Similarity=0.147 Sum_probs=80.9
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.- .+ .......++..+..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~--~~---~~~~~~i~~~~q~~ 82 (220)
T cd03265 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-----------TSGRATVAGHDVVR--EP---REVRRRIGIVFQDL 82 (220)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEecCc--Ch---HHHhhcEEEecCCc
Confidence 3444444489999999999999999999998777 78999998865431 11 00001111111211
Q ss_pred cccCCcch---hHHHHhcCC--ChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 138 STARTCNC---ILIVLDAIK--PITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 138 ~~~~~~d~---il~vvd~~~--~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
......++ +.+...... .....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~L 162 (220)
T cd03265 83 SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGL 162 (220)
T ss_pred cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 11222222 221111111 12234567788888988 46788999999999996665 4445555555
Q ss_pred CHHHHHH
Q 016864 202 DLDTVKA 208 (381)
Q Consensus 202 ~~~~v~~ 208 (381)
|......
T Consensus 163 D~~~~~~ 169 (220)
T cd03265 163 DPQTRAH 169 (220)
T ss_pred CHHHHHH
Confidence 5544443
No 245
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.42 E-value=6.3e-13 Score=126.17 Aligned_cols=137 Identities=20% Similarity=0.120 Sum_probs=82.3
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-. + .......++..
T Consensus 22 ~vsl~i~--~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~--~---~~~~~~i~~v~ 83 (303)
T TIGR01288 22 DLSFTIA--RGECFGLLGPNGAGKSTIARMLLGMISP-----------DRGKITVLGEPVPSR--A---RLARVAIGVVP 83 (303)
T ss_pred ceeEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccc--H---HHHhhcEEEEe
Confidence 4444544 4489999999999999999999998877 789999988765311 0 00011122222
Q ss_pred hhhcccCCcchhHHH---Hhc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIV---LDA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|........++.-.+ ... .......+.+...++.+++ ..++++..||+|+++|..++ +.+|||+
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPT 163 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 222222222332221 111 1112223455667788888 46788999999999997765 4555666
Q ss_pred CCCCHHHHHHH
Q 016864 199 TNLDLDTVKAI 209 (381)
Q Consensus 199 ~~l~~~~v~~~ 209 (381)
+++|......+
T Consensus 164 ~gLD~~~~~~l 174 (303)
T TIGR01288 164 TGLDPHARHLI 174 (303)
T ss_pred cCCCHHHHHHH
Confidence 66665544433
No 246
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.41 E-value=6.9e-13 Score=135.26 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccc-cceeeeecEEEEEc------------------CEEeeecCcccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYE-FTTLTCIPGVITYR------------------GAKIQLLDLPGIIEGA 126 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~-~tT~~~~~g~i~~~------------------g~~i~l~DtpG~~~~~ 126 (381)
+.|+++|++|+|||||+|+|++.... ...+ ++|.+.....+.++ ...+.++||||.....
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~-~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVA-KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccc-cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 69999999999999999999987433 2333 34443222112111 1248899999975432
Q ss_pred cCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 127 KDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 127 ~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.........+|++++|+|+.++
T Consensus 84 -------~l~~~~~~~aD~~IlVvD~~~g 105 (590)
T TIGR00491 84 -------NLRKRGGALADLAILIVDINEG 105 (590)
T ss_pred -------HHHHHHHhhCCEEEEEEECCcC
Confidence 1122245789999999999864
No 247
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.41 E-value=3.2e-13 Score=100.19 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=60.0
Q ss_pred CcEEEeCCCCCC-------CCCCCcEEecCCCCCHHHHHHHHHHHHHhcccEEEEecCCCccCCeeeCCCcccccCCCCC
Q 016864 292 LTRIYTKPKGMN-------PDYEDPVILSSKKRTVEDFCERIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELEDEXXXX 364 (381)
Q Consensus 292 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~f~~a~~~~~~~~~~~~rvg~~~~l~~~d~~~ 364 (381)
++++||++.+.. ++...|+++++ ++|++++|..||+|+.++|++|.+|+ +||+|.+|+++||||++
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~-g~tv~d~a~~IH~d~~~~F~~A~v~~------~~~vg~d~~l~d~DVv~ 73 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKK-GTTVGDVARKIHGDLEKGFIEAVGGR------RRLEGKDVILGKNDILK 73 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcC-CCCHHHHHHHHhHHHHhccEEEEEcc------CEEECCCEEecCCCEEE
Confidence 367899876543 56778888866 59999999999999999999999998 79999999999999999
Q ss_pred CCC
Q 016864 365 XXX 367 (381)
Q Consensus 365 i~~ 367 (381)
|+.
T Consensus 74 i~~ 76 (76)
T cd04938 74 FKT 76 (76)
T ss_pred EEC
Confidence 863
No 248
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.41 E-value=1.1e-12 Score=119.41 Aligned_cols=140 Identities=21% Similarity=0.250 Sum_probs=82.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-.+............+...+.
T Consensus 28 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 96 (228)
T PRK10584 28 GVELVVKRGETIALIGESGSGKSTLLAILAGLDDG-----------SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQS 96 (228)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCeeEEECCEEcccCCHHHHHHHHhheEEEEEcc
Confidence 33444444589999999999999999999999877 8899999987664322110000000011111121
Q ss_pred hcccCCcch---hHHH--HhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNC---ILIV--LDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~---il~v--vd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
.......++ +.+. ..........+.+.+.++.+++ ...+.+..||+|+++|..++ +.+|||+++
T Consensus 97 ~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~ 176 (228)
T PRK10584 97 FMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGN 176 (228)
T ss_pred cccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 111222222 2111 1111112334567788888888 45778999999999997665 444555555
Q ss_pred CCHHHHH
Q 016864 201 LDLDTVK 207 (381)
Q Consensus 201 l~~~~v~ 207 (381)
+|.....
T Consensus 177 LD~~~~~ 183 (228)
T PRK10584 177 LDRQTGD 183 (228)
T ss_pred CCHHHHH
Confidence 5554433
No 249
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.41 E-value=1.1e-12 Score=118.86 Aligned_cols=142 Identities=23% Similarity=0.247 Sum_probs=82.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..-.........++..+.
T Consensus 23 ~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 91 (221)
T TIGR02211 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-----------TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQF 91 (221)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecc
Confidence 33444444589999999999999999999999877 7899999887653222100000000011111111
Q ss_pred hcccCCcch---hHHHHhc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNC---ILIVLDA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~---il~vvd~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
.......++ +.+.... .......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||+++
T Consensus 92 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~ 171 (221)
T TIGR02211 92 HHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGN 171 (221)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCc
Confidence 111122222 2111111 1112234556778888888 46788899999999997665 455566666
Q ss_pred CCHHHHHHH
Q 016864 201 LDLDTVKAI 209 (381)
Q Consensus 201 l~~~~v~~~ 209 (381)
+|......+
T Consensus 172 LD~~~~~~l 180 (221)
T TIGR02211 172 LDNNNAKII 180 (221)
T ss_pred CCHHHHHHH
Confidence 655544433
No 250
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=9e-13 Score=119.30 Aligned_cols=131 Identities=21% Similarity=0.161 Sum_probs=80.7
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeec-CcccccccccCCCcch
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLL-DLPGIIEGAKDGKGRG 133 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~-DtpG~~~~~~~~~~~~ 133 (381)
+.+|++.. +..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-. ...|++.
T Consensus 22 ~vs~~i~~--G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~i~~v~--------- 79 (220)
T cd03293 22 DISLSVEE--GEFVALVGPSGCGKSTLLRIIAGLERP-----------TSGEVLVDGEPVTGPGPDRGYVF--------- 79 (220)
T ss_pred ceeEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccccCcEEEEe---------
Confidence 34455444 489999999999999999999998777 789999988765310 1112221
Q ss_pred hhhhcccCCcch---hHHHHhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 134 RQVISTARTCNC---ILIVLDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 134 ~~~~~~~~~~d~---il~vvd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
+........++ +.+..... ......+.+.+.++.+++ ...+++..||+|+++|..++ +.+|||
T Consensus 80 -q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP 158 (220)
T cd03293 80 -QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEP 158 (220)
T ss_pred -cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 11111121222 22211111 112234567788888888 46788899999999997665 444555
Q ss_pred CCCCCHHHHHH
Q 016864 198 NTNLDLDTVKA 208 (381)
Q Consensus 198 ~~~l~~~~v~~ 208 (381)
++++|......
T Consensus 159 t~~LD~~~~~~ 169 (220)
T cd03293 159 FSALDALTREQ 169 (220)
T ss_pred CCCCCHHHHHH
Confidence 55555544433
No 251
>PRK13351 elongation factor G; Reviewed
Probab=99.41 E-value=2.6e-13 Score=142.43 Aligned_cols=111 Identities=19% Similarity=0.327 Sum_probs=75.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccc---ccc---------cc------cccceeeeecEEEEEcCEEeeecCcccccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTF---SEV---------AS------YEFTTLTCIPGVITYRGAKIQLLDLPGIIEGA 126 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~---~~~---------~~------~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~ 126 (381)
..+|+++|+.|+|||||+++|+... ... .+ ..+.|+......+.|++..+.++||||..+..
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 3699999999999999999996421 111 11 24567777778889999999999999986542
Q ss_pred cCCCcchhhhhcccCCcchhHHHHhcCCChH-HHHHHHHHHHhcccccccCcCcccceeecc
Q 016864 127 KDGKGRGRQVISTARTCNCILIVLDAIKPIT-HKRLIEKELEGFGIRLNKQPPNLTFRKKDK 187 (381)
Q Consensus 127 ~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~-~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r 187 (381)
......++.+|++++|+|+..+.. +...+...+...+ .+..+.+++.++
T Consensus 88 -------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~-----~p~iiviNK~D~ 137 (687)
T PRK13351 88 -------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYG-----IPRLIFINKMDR 137 (687)
T ss_pred -------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcC-----CCEEEEEECCCC
Confidence 344456688999999999987632 2333333333322 234445555554
No 252
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.41 E-value=9.8e-13 Score=135.06 Aligned_cols=150 Identities=23% Similarity=0.279 Sum_probs=100.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc---------cc------ccccceeeeecEEEEEc-----CEEeeecCcccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE---------VA------SYEFTTLTCIPGVITYR-----GAKIQLLDLPGIIE 124 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~---------~~------~~~~tT~~~~~g~i~~~-----g~~i~l~DtpG~~~ 124 (381)
..+|+|+|+.++|||||+.+|+..... .. ...+.|+....-.+.|. +..+.++||||..+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 368999999999999999999643211 11 12467777666666664 46889999999977
Q ss_pred cccCCCcchhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHH
Q 016864 125 GAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLD 204 (381)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~ 204 (381)
.. ......++.+|.+++|+|++++...... ..
T Consensus 87 F~-------~~v~~sl~~aD~aILVVDas~gv~~qt~-~~---------------------------------------- 118 (600)
T PRK05433 87 FS-------YEVSRSLAACEGALLVVDASQGVEAQTL-AN---------------------------------------- 118 (600)
T ss_pred HH-------HHHHHHHHHCCEEEEEEECCCCCCHHHH-HH----------------------------------------
Confidence 53 2233456789999999999876321110 00
Q ss_pred HHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCH--HH-HHHHh---cCC--Ceeeeccccc
Q 016864 205 TVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL--EE-LEILD---KLP--HYCPVSAHLE 276 (381)
Q Consensus 205 ~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~--~~-l~~l~---~~~--~~v~vSa~~~ 276 (381)
+..+. ....|.|+|+||+|+... +. .+.+. ... .++++||+++
T Consensus 119 -~~~~~----------------------------~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG 169 (600)
T PRK05433 119 -VYLAL----------------------------ENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTG 169 (600)
T ss_pred -HHHHH----------------------------HCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCC
Confidence 00000 012699999999998642 21 12222 222 4799999999
Q ss_pred ccHHHHHHHHHHHcC
Q 016864 277 WNLDGLLEKIWEYLN 291 (381)
Q Consensus 277 ~gl~~L~~~i~~~l~ 291 (381)
.|+++|++.+.+.++
T Consensus 170 ~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 170 IGIEEVLEAIVERIP 184 (600)
T ss_pred CCHHHHHHHHHHhCc
Confidence 999999999998765
No 253
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.41 E-value=4.6e-13 Score=128.61 Aligned_cols=144 Identities=21% Similarity=0.222 Sum_probs=97.3
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++.. +..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+-..+. .....+++..
T Consensus 23 ~vsl~i~~--Gei~gIiG~sGaGKSTLlr~I~gl~~p-----------~~G~I~i~G~~i~~~~~~~l~-~~r~~Ig~v~ 88 (343)
T TIGR02314 23 NVSLHVPA--GQIYGVIGASGAGKSTLIRCVNLLERP-----------TSGSVIVDGQDLTTLSNSELT-KARRQIGMIF 88 (343)
T ss_pred eeEEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHHH-HHhcCEEEEE
Confidence 34455444 489999999999999999999999888 899999999876432211110 0112233333
Q ss_pred hhhcccCCcchhHHH---HhcC-CC-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIV---LDAI-KP-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~~-~~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|....+...++.-.+ .... .+ ....+.+.+.++.+++ ..++++..||+|+++|.+++ +.+|||+
T Consensus 89 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPt 168 (343)
T TIGR02314 89 QHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 333333333442222 1111 12 2334567788888988 67889999999999999887 7789999
Q ss_pred CCCCHHHHHHHHHH
Q 016864 199 TNLDLDTVKAICSE 212 (381)
Q Consensus 199 ~~l~~~~v~~~l~~ 212 (381)
+++|......++..
T Consensus 169 s~LD~~t~~~i~~l 182 (343)
T TIGR02314 169 SALDPATTQSILEL 182 (343)
T ss_pred ccCCHHHHHHHHHH
Confidence 99999887766554
No 254
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.41 E-value=4.6e-13 Score=124.93 Aligned_cols=97 Identities=21% Similarity=0.321 Sum_probs=67.1
Q ss_pred EEEEEcCCCCchHHHHHHHhcccc---ccc---------c------cccceeeeecEEEEEcCEEeeecCcccccccccC
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFS---EVA---------S------YEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD 128 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~---~~~---------~------~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~ 128 (381)
+|+|+|++|||||||+|+|.+... ..+ + ..+.|+.+....+.|++..+.++||||..+..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~-- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV-- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH--
Confidence 489999999999999999964321 111 1 12556666677888999999999999986532
Q ss_pred CCcchhhhhcccCCcchhHHHHhcCCCh-HHHHHHHHHHHhcc
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAIKPI-THKRLIEKELEGFG 170 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~~~~-~~~~~i~~~l~~~~ 170 (381)
.+....++.+|.+++|+|+..+. .....+...+...+
T Consensus 79 -----~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~ 116 (268)
T cd04170 79 -----GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAG 116 (268)
T ss_pred -----HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcC
Confidence 34445668899999999988752 23333444444444
No 255
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=9.3e-13 Score=120.75 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=80.8
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. ....+...+..
T Consensus 21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~------~~~i~~v~q~~ 83 (239)
T cd03296 21 VSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-----------DSGTILFGGEDATDVPVQ------ERNVGFVFQHY 83 (239)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCcc------ccceEEEecCC
Confidence 3444444489999999999999999999998877 789999988765322110 01111222221
Q ss_pred cccCCcchhHHHH---hcC------CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 138 STARTCNCILIVL---DAI------KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 138 ~~~~~~d~il~vv---d~~------~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
......++.-.+. ... ......+.+...++.+++ ..++++..||+|+++|..++ +.+|||
T Consensus 84 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 163 (239)
T cd03296 84 ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEP 163 (239)
T ss_pred cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1122223322111 110 111223456777888888 46778899999999997765 445555
Q ss_pred CCCCCHHHHHH
Q 016864 198 NTNLDLDTVKA 208 (381)
Q Consensus 198 ~~~l~~~~v~~ 208 (381)
++++|......
T Consensus 164 ~~~LD~~~~~~ 174 (239)
T cd03296 164 FGALDAKVRKE 174 (239)
T ss_pred cccCCHHHHHH
Confidence 55555544443
No 256
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=7.5e-13 Score=119.31 Aligned_cols=138 Identities=19% Similarity=0.173 Sum_probs=81.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCc-ccccccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDL-PGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~Dt-pG~~~~~~~~~~~~~~ 135 (381)
++++.... ..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-... ... .......++..+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~-~~~~~~i~~~~q 82 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP-----------DGGTIVLNGTVLFDSRKKINL-PPQQRKIGLVFQ 82 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEecccccchhhh-hhHhhcEEEEec
Confidence 55556656 79999999999999999999999877 78989888876431100 000 000111111122
Q ss_pred hhcccCCcch---hHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 136 VISTARTCNC---ILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 136 ~~~~~~~~d~---il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
........++ +.+......+....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred CCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 2111222222 22111111122334567788888888 46788999999999996665 4445555555
Q ss_pred CHHHHH
Q 016864 202 DLDTVK 207 (381)
Q Consensus 202 ~~~~v~ 207 (381)
|.....
T Consensus 163 D~~~~~ 168 (214)
T cd03297 163 DRALRL 168 (214)
T ss_pred CHHHHH
Confidence 554433
No 257
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.40 E-value=3e-12 Score=113.21 Aligned_cols=143 Identities=17% Similarity=0.202 Sum_probs=89.2
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++...+. ... ......+...
T Consensus 10 ~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~-~~~-~~~~~i~~~~ 74 (190)
T TIGR01166 10 GLNFAAE--RGEVLALLGANGAGKSTLLLHLNGLLRP-----------QSGAVLIDGEPLDYSRK-GLL-ERRQRVGLVF 74 (190)
T ss_pred ceeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceeEEECCEEcccccc-chH-HHHhhEEEEe
Confidence 3444544 4489999999999999999999998877 78999999877642110 000 0001111111
Q ss_pred hhhc-ccCCcch---hHHHHhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 135 QVIS-TARTCNC---ILIVLDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 135 ~~~~-~~~~~d~---il~vvd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
+... .+...++ +.+..... ......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||
T Consensus 75 q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 75 QDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1110 0011122 21111111 112223456777888888 56788999999999998886 778999
Q ss_pred CCCCCHHHHHHHHHH
Q 016864 198 NTNLDLDTVKAICSE 212 (381)
Q Consensus 198 ~~~l~~~~v~~~l~~ 212 (381)
++++|......+++.
T Consensus 155 t~~LD~~~~~~~~~~ 169 (190)
T TIGR01166 155 TAGLDPAGREQMLAI 169 (190)
T ss_pred cccCCHHHHHHHHHH
Confidence 999999877766553
No 258
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.40 E-value=5.4e-13 Score=119.44 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=78.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeec---CcccccccccCCCc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLL---DLPGIIEGAKDGKG 131 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~---DtpG~~~~~~~~~~ 131 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-. ...|+..+.+
T Consensus 18 ~v~~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~i~~~~q~~---- 80 (205)
T cd03226 18 DLSLDLY--AGEIIALTGKNGAGKTTLAKILAGLIKE-----------SSGSILLNGKPIKAKERRKSIGYVMQDV---- 80 (205)
T ss_pred eeeEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEhhhHHhhcceEEEecCh----
Confidence 3444444 4489999999999999999999998877 889999988765210 0012211110
Q ss_pred chhhhhcccCCcchhHHHHhcC-CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 132 RGRQVISTARTCNCILIVLDAI-KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 132 ~~~~~~~~~~~~d~il~vvd~~-~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
. . .+...++.-.+.-.. ........+.+.++.+++ ..++.+..||+|+++|..++ +.+|||++
T Consensus 81 ---~-~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 155 (205)
T cd03226 81 ---D-Y-QLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTS 155 (205)
T ss_pred ---h-h-hhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCc
Confidence 0 0 001112211111000 001122456778888888 56788999999999997665 44455555
Q ss_pred CCCHHHHHH
Q 016864 200 NLDLDTVKA 208 (381)
Q Consensus 200 ~l~~~~v~~ 208 (381)
++|......
T Consensus 156 ~LD~~~~~~ 164 (205)
T cd03226 156 GLDYKNMER 164 (205)
T ss_pred cCCHHHHHH
Confidence 555544433
No 259
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.40 E-value=9.2e-13 Score=121.96 Aligned_cols=113 Identities=22% Similarity=0.191 Sum_probs=69.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeec-CcccccccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLL-DLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~-DtpG~~~~~~~~~~~~~~ 135 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-+ ...|+.. +
T Consensus 30 ~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~i~~v~----------q 88 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP-----------SAGELLAGTAPLAEAREDTRLMF----------Q 88 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEHHHhhCceEEEe----------c
Confidence 34444444589999999999999999999998877 789888877653100 0112211 1
Q ss_pred hhcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 136 VISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
........++.-.+.-.... ...+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 89 ~~~l~~~~tv~enl~~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~la 145 (257)
T PRK11247 89 DARLLPWKKVIDNVGLGLKG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALA 145 (257)
T ss_pred CccCCCCCcHHHHHHhcccc-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 11111222222222111111 123456677888888 56788999999999996654
No 260
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.40 E-value=1.1e-12 Score=120.35 Aligned_cols=138 Identities=19% Similarity=0.160 Sum_probs=114.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++. ++...+|.|.+|||||||+++|.+...| +.|.+.++|..+.-++.+.+++.......+..
T Consensus 46 ~~sl~v~--~GeIfViMGLSGSGKSTLvR~~NrLiep-----------t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVF 112 (386)
T COG4175 46 DASLDVE--EGEIFVIMGLSGSGKSTLVRLLNRLIEP-----------TRGEILVDGKDIAKLSAAELRELRRKKISMVF 112 (386)
T ss_pred cceeeec--CCeEEEEEecCCCCHHHHHHHHhccCCC-----------CCceEEECCcchhcCCHHHHHHHHhhhhhhhh
Confidence 4455544 4589999999999999999999998888 99999999998877777777777777778888
Q ss_pred hhhcccCCcchhHHHHhc-----CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIVLDA-----IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~-----~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|.+.++++.+++-.+.-. ....+..+...+.|+..|+ ..+++|..||+|++||.+++ +.+||++
T Consensus 113 Q~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 113 QSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred hhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCch
Confidence 989999999887766432 2224556778899999999 78899999999999999997 7779999
Q ss_pred CCCCHHH
Q 016864 199 TNLDLDT 205 (381)
Q Consensus 199 ~~l~~~~ 205 (381)
+.+|+-.
T Consensus 193 SALDPLI 199 (386)
T COG4175 193 SALDPLI 199 (386)
T ss_pred hhcChHH
Confidence 9999843
No 261
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.40 E-value=4.3e-13 Score=139.36 Aligned_cols=83 Identities=24% Similarity=0.209 Sum_probs=63.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccccc-----------c----------------------cccceeeeecEEEEEcCE
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVA-----------S----------------------YEFTTLTCIPGVITYRGA 112 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~-----------~----------------------~~~tT~~~~~g~i~~~g~ 112 (381)
.+|+++|++|+|||||+++|+.....+. . ..++|++...+.+.+++.
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~~ 104 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPKR 104 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCCc
Confidence 6899999999999999999976432221 0 135677777777888889
Q ss_pred EeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 113 KIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 113 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
++.++||||..+.. ..+...+..+|++++|+|+..+
T Consensus 105 ~~~liDtPG~~~f~-------~~~~~~~~~aD~~llVvda~~g 140 (632)
T PRK05506 105 KFIVADTPGHEQYT-------RNMVTGASTADLAIILVDARKG 140 (632)
T ss_pred eEEEEECCChHHHH-------HHHHHHHHhCCEEEEEEECCCC
Confidence 99999999975432 3344456889999999999765
No 262
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.39 E-value=1.2e-12 Score=120.78 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=73.4
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCccc----ccccccCCC
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPG----IIEGAKDGK 130 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG----~~~~~~~~~ 130 (381)
+.+|++.. +..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.+.+. -........
T Consensus 21 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i 87 (250)
T PRK11264 21 GIDLEVKP--GEVVAIIGPSGSGKTTLLRCINLLEQP-----------EAGTIRVGDITIDTARSLSQQKGLIRQLRQHV 87 (250)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccccccchhhHHHHhhhhE
Confidence 44555544 489999999999999999999998777 7899999887764221100 000001111
Q ss_pred cchhhhhcccCCcchhHHHH------hcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 131 GRGRQVISTARTCNCILIVL------DAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 131 ~~~~~~~~~~~~~d~il~vv------d~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
+...+........++.-.+. .........+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 88 GFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred EEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHH
Confidence 12122211222223322221 111112233456677888888 45778999999999996654
No 263
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.39 E-value=1.4e-12 Score=117.50 Aligned_cols=135 Identities=17% Similarity=0.142 Sum_probs=81.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. ....+...
T Consensus 18 ~is~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~v~~~g~~~~~~~~~------~~~i~~~~ 78 (213)
T cd03301 18 DLNLDIA--DGEFVVLLGPSGCGKTTTLRMIAGLEEP-----------TSGRIYIGGRDVTDLPPK------DRDIAMVF 78 (213)
T ss_pred ceEEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCcc------cceEEEEe
Confidence 3444444 4489999999999999999999998777 789999988765321110 01111112
Q ss_pred hhhcccCCcchhHHHH---hc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIVL---DA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv---d~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
+........++.-.+. .. ..+....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||+
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt 158 (213)
T cd03301 79 QNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL 158 (213)
T ss_pred cChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 2111222223322111 11 1122234456777888888 46888999999999996665 4555666
Q ss_pred CCCCHHHHHH
Q 016864 199 TNLDLDTVKA 208 (381)
Q Consensus 199 ~~l~~~~v~~ 208 (381)
+++|......
T Consensus 159 ~~LD~~~~~~ 168 (213)
T cd03301 159 SNLDAKLRVQ 168 (213)
T ss_pred ccCCHHHHHH
Confidence 6665554443
No 264
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.39 E-value=7.9e-13 Score=120.93 Aligned_cols=136 Identities=22% Similarity=0.283 Sum_probs=80.5
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..-. ...+.++..
T Consensus 18 ~vsl~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~v~ 81 (236)
T cd03219 18 DVSFSVR--PGEIHGLIGPNGAGKTTLFNLISGFLRP-----------TSGSVLFDGEDITGLPPHEI---ARLGIGRTF 81 (236)
T ss_pred CceEEec--CCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCceEEECCEECCCCCHHHH---HhcCEEEEe
Confidence 3445544 4489999999999999999999998877 78999998876532211000 001111112
Q ss_pred hhhcccCCcchhHHH---HhcC-C-----------ChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce------
Q 016864 135 QVISTARTCNCILIV---LDAI-K-----------PITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN------ 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~~-~-----------~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~------ 191 (381)
+........++.-.+ .... . .....+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 82 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 161 (236)
T cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD 161 (236)
T ss_pred cccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 222222222332211 1111 0 12234457778888888 46788999999999996665
Q ss_pred ---eeecccCCCCCHHHH
Q 016864 192 ---FTSTVTNTNLDLDTV 206 (381)
Q Consensus 192 ---i~~~~~~~~l~~~~v 206 (381)
+.+|||++++|....
T Consensus 162 p~llllDEPt~~LD~~~~ 179 (236)
T cd03219 162 PKLLLLDEPAAGLNPEET 179 (236)
T ss_pred CCEEEEcCCcccCCHHHH
Confidence 444555555554433
No 265
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.39 E-value=7.8e-13 Score=131.38 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=65.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc-------------------------------cccccceeeeecEEEEEcCEEe
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV-------------------------------ASYEFTTLTCIPGVITYRGAKI 114 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~-------------------------------~~~~~tT~~~~~g~i~~~g~~i 114 (381)
.+|+++|+.++|||||+++|+.....+ ....++|+|.....+.+++..+
T Consensus 8 ~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~i 87 (426)
T TIGR00483 8 INVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYEV 87 (426)
T ss_pred eEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeEE
Confidence 789999999999999999997421111 1145889999888888889999
Q ss_pred eecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 115 QLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 115 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.++||||..+. ...+...+..+|++++|+|+.++
T Consensus 88 ~iiDtpGh~~f-------~~~~~~~~~~aD~~ilVvDa~~~ 121 (426)
T TIGR00483 88 TIVDCPGHRDF-------IKNMITGASQADAAVLVVAVGDG 121 (426)
T ss_pred EEEECCCHHHH-------HHHHHhhhhhCCEEEEEEECCCC
Confidence 99999996543 23444456889999999999876
No 266
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=1.1e-12 Score=117.83 Aligned_cols=129 Identities=17% Similarity=0.212 Sum_probs=78.3
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeee--cCcccccccccCCCcchhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQL--LDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l--~DtpG~~~~~~~~~~~~~~ 135 (381)
+++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.- ....+++. +
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~i~~~~----------q 77 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-----------DSGEVLFDGKPLDIAARNRIGYLP----------E 77 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCCchhHHHHccEEEec----------c
Confidence 3444444489999999999999999999998777 78999998865421 00112211 1
Q ss_pred hhcccCCcch---hHHHHhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 136 VISTARTCNC---ILIVLDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 136 ~~~~~~~~d~---il~vvd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
........++ +.+..... ......+.+.+.++.+++ ...+++..||+|+++|..++ +.+|||++
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~ 157 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 1111122222 21111111 112234566778888888 46778899999999996665 44455555
Q ss_pred CCCHHHHH
Q 016864 200 NLDLDTVK 207 (381)
Q Consensus 200 ~l~~~~v~ 207 (381)
++|.....
T Consensus 158 ~LD~~~~~ 165 (210)
T cd03269 158 GLDPVNVE 165 (210)
T ss_pred CCCHHHHH
Confidence 55554443
No 267
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.39 E-value=1.3e-12 Score=119.18 Aligned_cols=138 Identities=22% Similarity=0.225 Sum_probs=82.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++.. +..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.... .....+...
T Consensus 18 ~vs~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~ 81 (232)
T cd03218 18 GVSLSVKQ--GEIVGLLGPNGAGKTTTFYMIVGLVKP-----------DSGKILLDGQDITKLPMHKR---ARLGIGYLP 81 (232)
T ss_pred cceeEecC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEecccCCHhHH---HhccEEEec
Confidence 44555554 489999999999999999999998877 78999998876532211000 001111112
Q ss_pred hhhcccCCcchhHHH---HhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIV---LDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
+........++.-.+ .... ........+...++.+++ ..++.+..||+|+++|..++ +.+|||+
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 161 (232)
T cd03218 82 QEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPF 161 (232)
T ss_pred CCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 221122222332211 1111 112233456678888888 46788899999999996665 4445555
Q ss_pred CCCCHHHHHH
Q 016864 199 TNLDLDTVKA 208 (381)
Q Consensus 199 ~~l~~~~v~~ 208 (381)
+++|......
T Consensus 162 ~~LD~~~~~~ 171 (232)
T cd03218 162 AGVDPIAVQD 171 (232)
T ss_pred ccCCHHHHHH
Confidence 5555544433
No 268
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=1.6e-12 Score=119.31 Aligned_cols=141 Identities=20% Similarity=0.251 Sum_probs=83.5
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.... .......++..
T Consensus 19 ~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~~ 84 (241)
T cd03256 19 DVSLSIN--PGEFVALIGPSGAGKSTLLRCLNGLVEP-----------TSGSVLIDGTDINKLKGKAL-RQLRRQIGMIF 84 (241)
T ss_pred cceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEEECCEeccccCHhHH-HHHHhccEEEc
Confidence 3444444 4489999999999999999999998877 78999998876543220000 00011111212
Q ss_pred hhhcccCCcchhHHHHhc-------------CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce--------
Q 016864 135 QVISTARTCNCILIVLDA-------------IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN-------- 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~-------------~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~-------- 191 (381)
+........++.-.+.-. .......+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 85 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 164 (241)
T cd03256 85 QQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPK 164 (241)
T ss_pred ccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 221112222222111100 0112334566778888888 46788899999999997765
Q ss_pred -eeecccCCCCCHHHHHHH
Q 016864 192 -FTSTVTNTNLDLDTVKAI 209 (381)
Q Consensus 192 -i~~~~~~~~l~~~~v~~~ 209 (381)
+.+|||++++|......+
T Consensus 165 llllDEPt~~LD~~~~~~l 183 (241)
T cd03256 165 LILADEPVASLDPASSRQV 183 (241)
T ss_pred EEEEeCccccCCHHHHHHH
Confidence 455566666665544433
No 269
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=1.5e-12 Score=118.83 Aligned_cols=145 Identities=21% Similarity=0.226 Sum_probs=91.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+............++..|.
T Consensus 27 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~ 95 (233)
T PRK11629 27 NVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-----------TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQF 95 (233)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCHHHHHHHHhccEEEEecC
Confidence 33444444589999999999999999999998777 8899999987664322110000000111111221
Q ss_pred hcccCCcchhHHH---Hh--cCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIV---LD--AIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd--~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
.......++.-.+ .. ........+.+.+.++.+++ ...+.+..||+|+++|..++ +.+|||+++
T Consensus 96 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~ 175 (233)
T PRK11629 96 HHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGN 175 (233)
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 1122222332211 11 11122334567788888988 46778899999999998886 778999999
Q ss_pred CCHHHHHHHHHH
Q 016864 201 LDLDTVKAICSE 212 (381)
Q Consensus 201 l~~~~v~~~l~~ 212 (381)
+|......+++.
T Consensus 176 LD~~~~~~l~~~ 187 (233)
T PRK11629 176 LDARNADSIFQL 187 (233)
T ss_pred CCHHHHHHHHHH
Confidence 999877665543
No 270
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.39 E-value=1.3e-12 Score=119.21 Aligned_cols=113 Identities=20% Similarity=0.300 Sum_probs=71.8
Q ss_pred CceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCc-ccccccccCCCcchh
Q 016864 56 EGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDL-PGIIEGAKDGKGRGR 134 (381)
Q Consensus 56 ~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~Dt-pG~~~~~~~~~~~~~ 134 (381)
.+|++.. +..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+. .++..+
T Consensus 4 is~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~v~q--------- 61 (230)
T TIGR01184 4 VNLTIQQ--GEFISLIGHSGCGKSTLLNLISGLAQP-----------TSGGVILEGKQITEPGPDRMVVFQ--------- 61 (230)
T ss_pred eeEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCChhheEEec---------
Confidence 3455544 489999999999999999999999877 78999998876532111 122211
Q ss_pred hhhcccCCcch---hHHHHhc----CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 135 QVISTARTCNC---ILIVLDA----IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 135 ~~~~~~~~~d~---il~vvd~----~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
........++ +.+.... .......+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 62 -~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 126 (230)
T TIGR01184 62 -NYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIA 126 (230)
T ss_pred -CcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHH
Confidence 1111122222 2221111 1112234456778888888 46788999999999996655
No 271
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.39 E-value=1.3e-12 Score=118.03 Aligned_cols=138 Identities=18% Similarity=0.206 Sum_probs=84.2
Q ss_pred CceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhh
Q 016864 56 EGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 56 ~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
.++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.- +...+ ....+...+
T Consensus 22 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~-~~~~~----~~~i~~~~q 85 (218)
T cd03266 22 DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-----------DAGFATVDGFDVVK-EPAEA----RRRLGFVSD 85 (218)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEEECCEEccc-CHHHH----HhhEEEecC
Confidence 344444444589999999999999999999998777 78999998876542 10000 111112222
Q ss_pred hhcccCCcch---hHHHHhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 136 VISTARTCNC---ILIVLDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 136 ~~~~~~~~d~---il~vvd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
.........+ +.+..... ......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++
T Consensus 86 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~ 165 (218)
T cd03266 86 STGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTT 165 (218)
T ss_pred CcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 2112222233 22111111 112334567788888888 46888999999999997665 45556666
Q ss_pred CCCHHHHHHH
Q 016864 200 NLDLDTVKAI 209 (381)
Q Consensus 200 ~l~~~~v~~~ 209 (381)
++|......+
T Consensus 166 ~LD~~~~~~l 175 (218)
T cd03266 166 GLDVMATRAL 175 (218)
T ss_pred CCCHHHHHHH
Confidence 6665544433
No 272
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.39 E-value=8.7e-13 Score=109.92 Aligned_cols=146 Identities=25% Similarity=0.220 Sum_probs=93.0
Q ss_pred EEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEE--cCEEeeecCcccccccccCCCcchhhhhcccCCcchhH
Q 016864 70 LVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITY--RGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCIL 147 (381)
Q Consensus 70 lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~--~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il 147 (381)
++|++|+|||||+|+|++..........|..+.....+.. .+..+.++|+||...... .....++.+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~~~~i 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS-------LRRLYYRGADGII 73 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh-------HHHHHhcCCCEEE
Confidence 5899999999999999987653233333334444444433 257899999999866432 1133458899999
Q ss_pred HHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCC
Q 016864 148 IVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDAT 227 (381)
Q Consensus 148 ~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t 227 (381)
+|+|+..+.......... ...+..
T Consensus 74 ~v~d~~~~~~~~~~~~~~-----------------------------------------~~~~~~--------------- 97 (157)
T cd00882 74 LVYDVTDRESFENVKEWL-----------------------------------------LLILIN--------------- 97 (157)
T ss_pred EEEECcCHHHHHHHHHHH-----------------------------------------HHHHHh---------------
Confidence 999998764321110000 000000
Q ss_pred hhHHHHHHhcccccccEEEEEecCCcCCHHHHH------H--HhcCCCeeeecccccccHHHHHHHHH
Q 016864 228 ADDLIDVIEGSRIYMPCIYVINKIDQITLEELE------I--LDKLPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 228 ~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~------~--l~~~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
.....+|+++++||+|+....... . .....+++.+|+..+.|++++++++.
T Consensus 98 ---------~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 98 ---------KEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred ---------hccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 011137999999999987543221 1 12345789999999999999998874
No 273
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.39 E-value=1.5e-12 Score=115.78 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=47.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc-cc----cccceeeeecEEEEEc-CEEeeecCcccccccccCCCcchhhhhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV-AS----YEFTTLTCIPGVITYR-GAKIQLLDLPGIIEGAKDGKGRGRQVIST 139 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~-~~----~~~tT~~~~~g~i~~~-g~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 139 (381)
.+|+++|.+|||||||+|+|+|...+. +. ...+|... +.+... ...+.++||||+.+..........+ ..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~--~~ 77 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEE--MK 77 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecCCCCCceEEeCCCCCcccCCHHHHHHH--hC
Confidence 589999999999999999999965322 11 11123221 112211 3478999999986532211111111 12
Q ss_pred cCCcchhHHHHh
Q 016864 140 ARTCNCILIVLD 151 (381)
Q Consensus 140 ~~~~d~il~vvd 151 (381)
+..+|++++|.+
T Consensus 78 ~~~~d~~l~v~~ 89 (197)
T cd04104 78 FSEYDFFIIISS 89 (197)
T ss_pred ccCcCEEEEEeC
Confidence 456788777744
No 274
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.39 E-value=9.3e-13 Score=121.91 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=71.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeec-CcccccccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLL-DLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~-DtpG~~~~~~~~~~~~~~ 135 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-. ...|+..+
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~v~q---------- 77 (255)
T PRK11248 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY-----------QHGSITLDGKPVEGPGAERGVVFQ---------- 77 (255)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCCcEEEEeC----------
Confidence 33444444589999999999999999999998877 789999988765311 01122221
Q ss_pred hhcccCCcchhHHHH---h--cCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 136 VISTARTCNCILIVL---D--AIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 136 ~~~~~~~~d~il~vv---d--~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
........++.-.+. . ........+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~la 140 (255)
T PRK11248 78 NEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIA 140 (255)
T ss_pred CCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHH
Confidence 111112222221111 1 11112234567788888888 45778999999999996654
No 275
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.39 E-value=1.1e-12 Score=129.01 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=63.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc----------------cccccccceeeeecEEEEEcCEEeeecCcccccccccC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS----------------EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD 128 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~----------------~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~ 128 (381)
..+|+++|+.++|||||+++|++... +..-..++|++...-.+..++..+.++||||..+..
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~-- 89 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV-- 89 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH--
Confidence 37899999999999999999985311 011237899988666665567889999999986532
Q ss_pred CCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
..+...+..+|++++|+|+..+
T Consensus 90 -----~~~~~~~~~~D~~ilVvda~~g 111 (394)
T TIGR00485 90 -----KNMITGAAQMDGAILVVSATDG 111 (394)
T ss_pred -----HHHHHHHhhCCEEEEEEECCCC
Confidence 4555556788999999999874
No 276
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.39 E-value=1e-12 Score=124.83 Aligned_cols=137 Identities=20% Similarity=0.202 Sum_probs=84.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+++|++.. +..+||+|+||||||||+++|+|...+ ..|.+.++|.++.-.. + ......+...
T Consensus 25 ~vsl~i~~--Gei~gllGpNGaGKSTLl~~l~Gl~~p-----------~~G~v~i~G~~~~~~~-~----~~~~~ig~v~ 86 (306)
T PRK13537 25 GLSFHVQR--GECFGLLGPNGAGKTTTLRMLLGLTHP-----------DAGSISLCGEPVPSRA-R----HARQRVGVVP 86 (306)
T ss_pred cceEEEeC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEecccch-H----HHHhcEEEEe
Confidence 45566554 479999999999999999999999887 8899999987653210 0 0011122222
Q ss_pred hhhcccCCcch---hHHHHhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNC---ILIVLDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~---il~vvd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
+........++ +.+.-... ........+.+.++.+++ ..++++..||+|+++|.+++ +.+|||+
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 22222222333 22211111 112233456677888888 56788999999999997776 5556666
Q ss_pred CCCCHHHHHHH
Q 016864 199 TNLDLDTVKAI 209 (381)
Q Consensus 199 ~~l~~~~v~~~ 209 (381)
+++|......+
T Consensus 167 ~gLD~~~~~~l 177 (306)
T PRK13537 167 TGLDPQARHLM 177 (306)
T ss_pred cCCCHHHHHHH
Confidence 66666554443
No 277
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=1.8e-12 Score=116.62 Aligned_cols=134 Identities=20% Similarity=0.164 Sum_probs=80.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+.+++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+. . ....++..+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-----------~~G~i~~~g~~~~~~~~--~----~~~i~~~~q~ 78 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP-----------QSGRVLINGVDVTAAPP--A----DRPVSMLFQE 78 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcCcCCH--h----HccEEEEecc
Confidence 44444445589999999999999999999999877 78999998876532110 0 0111111222
Q ss_pred hcccCCcchhHHH---HhcC-C-ChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIV---LDAI-K-PITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~~-~-~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
...+...++.-.+ .... . .....+.+.+.++.+++ ..++.+..||+|+++|..++ +.+|||+++
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~ 158 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAA 158 (211)
T ss_pred cccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 1122222222211 1100 0 11234467778888888 46788899999999996665 444555555
Q ss_pred CCHHHHH
Q 016864 201 LDLDTVK 207 (381)
Q Consensus 201 l~~~~v~ 207 (381)
+|.....
T Consensus 159 LD~~~~~ 165 (211)
T cd03298 159 LDPALRA 165 (211)
T ss_pred CCHHHHH
Confidence 5554443
No 278
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.39 E-value=8.8e-13 Score=130.02 Aligned_cols=150 Identities=25% Similarity=0.269 Sum_probs=98.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc---cccccccceeeeecEEEEEc--------------------------CEEee
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS---EVASYEFTTLTCIPGVITYR--------------------------GAKIQ 115 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~---~~~~~~~tT~~~~~g~i~~~--------------------------g~~i~ 115 (381)
..+|+++|+-++|||||+.+|++... +-.-..+.|++.......+. ...+.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 37899999999999999999988521 11223567776543322221 25789
Q ss_pred ecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCCh--HHHHHHHHHHHhcccccccCcCcccceeeccccceee
Q 016864 116 LLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPI--THKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFT 193 (381)
Q Consensus 116 l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~--~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~ 193 (381)
++||||..+. ...++..+..+|++++|+|+.++. .+......
T Consensus 89 liDtPG~~~f-------~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----------------------------- 132 (411)
T PRK04000 89 FVDAPGHETL-------MATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----------------------------- 132 (411)
T ss_pred EEECCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH-----------------------------
Confidence 9999997543 245555667889999999998753 11111111
Q ss_pred ecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----HHHh----c-
Q 016864 194 STVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----EILD----K- 264 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~l~----~- 264 (381)
.+..++ ..|.++|+||+|+.+.++. +.+. .
T Consensus 133 ---------------~l~~~~--------------------------i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~ 171 (411)
T PRK04000 133 ---------------ALDIIG--------------------------IKNIVIVQNKIDLVSKERALENYEQIKEFVKGT 171 (411)
T ss_pred ---------------HHHHcC--------------------------CCcEEEEEEeeccccchhHHHHHHHHHHHhccc
Confidence 111100 1378999999999754321 1111 1
Q ss_pred ---CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 265 ---LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 265 ---~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
..+++++||+++.|+++|++.+...++
T Consensus 172 ~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 172 VAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 246899999999999999999988654
No 279
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.38 E-value=2.6e-12 Score=110.14 Aligned_cols=144 Identities=14% Similarity=0.107 Sum_probs=90.0
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+|+++|.+|||||||++.+...... ..++ +|.......+.++| ..+.++||+|... .. ..+.+|
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~-~~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~~---------~~---~~~~~~ 67 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV-QLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPD---------AQ---FASWVD 67 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC-CCCC-CCccceEEEEEECCEEEEEEEEECCCCCc---------hh---HHhcCC
Confidence 7999999999999999987543211 1222 22222335577777 4578899999632 11 236789
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|.+++..- +.+.. ++..+...
T Consensus 68 ~~ilv~d~~~~~sf-~~~~~--------------------------------------------~~~~i~~~-------- 94 (158)
T cd04103 68 AVIFVFSLENEASF-QTVYN--------------------------------------------LYHQLSSY-------- 94 (158)
T ss_pred EEEEEEECCCHHHH-HHHHH--------------------------------------------HHHHHHHh--------
Confidence 99999999876421 11111 11111000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCC-------HHHHHHHh-c--CCCeeeecccccccHHHHHHHHHHH
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQIT-------LEELEILD-K--LPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-------~~~l~~l~-~--~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
. .....|+++|.||+|+.. .++.+.+. + ...++.+||+++.|++++++.+.+.
T Consensus 95 -----------~-~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 95 -----------R-NISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred -----------c-CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 0 001269999999999742 12223332 2 2468899999999999999988753
No 280
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.38 E-value=2.1e-12 Score=125.05 Aligned_cols=144 Identities=21% Similarity=0.183 Sum_probs=92.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccc-cccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI-IEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~-~~~~~~~~~~~~~ 135 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.. ++. ........++..|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~~~g~~i~~~~-~~~~~~~~~~~i~~v~q 82 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP-----------DEGEIVLNGRTLFDSR-KGIFLPPEKRRIGYVFQ 82 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccCc-cccccchhhCCeEEEec
Confidence 34444444589999999999999999999999877 8899999887653210 000 0001112222223
Q ss_pred hhcccCCcchhHHHH---hcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 136 VISTARTCNCILIVL---DAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 136 ~~~~~~~~d~il~vv---d~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
........++.-.+. .........+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++
T Consensus 83 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 83 EARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred CCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 222233333322221 111122234457788888888 57888999999999998886 7778999999
Q ss_pred CHHHHHHHHHH
Q 016864 202 DLDTVKAICSE 212 (381)
Q Consensus 202 ~~~~v~~~l~~ 212 (381)
|......++..
T Consensus 163 D~~~~~~l~~~ 173 (354)
T TIGR02142 163 DDPRKYEILPY 173 (354)
T ss_pred CHHHHHHHHHH
Confidence 98876665543
No 281
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.6e-12 Score=122.37 Aligned_cols=144 Identities=20% Similarity=0.175 Sum_probs=88.8
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-...+.-........++..
T Consensus 25 ~vsl~i~--~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~ 91 (287)
T PRK13641 25 NISFELE--EGSFVALVGHTGSGKSTLMQHFNALLKP-----------SSGTITIAGYHITPETGNKNLKKLRKKVSLVF 91 (287)
T ss_pred eeEEEEe--CCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchHHHHHhceEEEE
Confidence 3445544 4489999999999999999999999887 89999999976632111000000011111111
Q ss_pred hhhc-ccCCcchhHHHH----h-cCCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccce---------eeecc
Q 016864 135 QVIS-TARTCNCILIVL----D-AIKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 135 ~~~~-~~~~~d~il~vv----d-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
+... .+...++.-.+. . ...+....+.+.+.++.+++. .++++..||+|+++|..++ +.+||
T Consensus 92 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDE 171 (287)
T PRK13641 92 QFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE 171 (287)
T ss_pred eChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 1100 011112221111 1 111223345677788888883 5788999999999998886 77788
Q ss_pred cCCCCCHHHHHHHHH
Q 016864 197 TNTNLDLDTVKAICS 211 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~ 211 (381)
|++++|......+++
T Consensus 172 Pt~gLD~~~~~~l~~ 186 (287)
T PRK13641 172 PAAGLDPEGRKEMMQ 186 (287)
T ss_pred CCCCCCHHHHHHHHH
Confidence 888888876665544
No 282
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.4e-12 Score=125.72 Aligned_cols=144 Identities=18% Similarity=0.231 Sum_probs=92.2
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.... .......++..
T Consensus 23 ~vsl~i~--~Gei~~iiG~nGsGKSTLlk~L~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~-~~~~~~ig~v~ 88 (343)
T PRK11153 23 NVSLHIP--AGEIFGVIGASGAGKSTLIRCINLLERP-----------TSGRVLVDGQDLTALSEKEL-RKARRQIGMIF 88 (343)
T ss_pred eeEEEEc--CCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCHHHH-HHHhcCEEEEe
Confidence 3444444 4489999999999999999999999877 88999999877642211100 00011122222
Q ss_pred hhhcccCCcch---hHHHHhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNC---ILIVLDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~---il~vvd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
+....+...++ +.+..... ......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||+
T Consensus 89 q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPt 168 (343)
T PRK11153 89 QHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEAT 168 (343)
T ss_pred CCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 22222222233 22211111 112234567778888888 46788999999999998887 7789999
Q ss_pred CCCCHHHHHHHHHH
Q 016864 199 TNLDLDTVKAICSE 212 (381)
Q Consensus 199 ~~l~~~~v~~~l~~ 212 (381)
+++|......++..
T Consensus 169 s~LD~~~~~~l~~~ 182 (343)
T PRK11153 169 SALDPATTRSILEL 182 (343)
T ss_pred ccCCHHHHHHHHHH
Confidence 99998776665543
No 283
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.38 E-value=1.1e-12 Score=126.81 Aligned_cols=145 Identities=16% Similarity=0.123 Sum_probs=100.8
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++.. +..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+........++..
T Consensus 11 ~vs~~i~~--Gei~~l~G~sGsGKSTLLr~L~Gl~~p-----------~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~ 77 (363)
T TIGR01186 11 DADLAIAK--GEIFVIMGLSGSGKSTTVRMLNRLIEP-----------TAGQIFIDGENIMKQSPVELREVRRKKIGMVF 77 (363)
T ss_pred eeEEEEcC--CCEEEEECCCCChHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCHHHHHHHHhCcEEEEE
Confidence 44555554 489999999999999999999999888 89999999987654332222111122333444
Q ss_pred hhhcccCCcchhHHHH---hc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIVL---DA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv---d~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|....+++.++.-.+. .. .......+.+.+.++.+++ ..++++..||+|+++|.+++ +.+|||+
T Consensus 78 Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 78 QQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred CCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4444445545532221 11 1122335667888888888 57889999999999999887 7889999
Q ss_pred CCCCHHHHHHHHHH
Q 016864 199 TNLDLDTVKAICSE 212 (381)
Q Consensus 199 ~~l~~~~v~~~l~~ 212 (381)
+++|......+...
T Consensus 158 saLD~~~r~~l~~~ 171 (363)
T TIGR01186 158 SALDPLIRDSMQDE 171 (363)
T ss_pred ccCCHHHHHHHHHH
Confidence 99999877766554
No 284
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=2.6e-12 Score=124.27 Aligned_cols=139 Identities=20% Similarity=0.172 Sum_probs=98.8
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.- .+. .....++..
T Consensus 22 ~vsl~i~--~Ge~~~llG~sGsGKSTLLr~iaGl~~p-----------~~G~I~~~g~~i~~--~~~----~~r~ig~v~ 82 (356)
T PRK11650 22 GIDLDVA--DGEFIVLVGPSGCGKSTLLRMVAGLERI-----------TSGEIWIGGRVVNE--LEP----ADRDIAMVF 82 (356)
T ss_pred eeeEEEc--CCCEEEEECCCCCcHHHHHHHHHCCCCC-----------CceEEEECCEECCC--CCH----HHCCEEEEe
Confidence 3445544 4479999999999999999999999888 89999999987642 111 112344445
Q ss_pred hhhcccCCcchhHHHH---hcCC-C-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIVL---DAIK-P-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv---d~~~-~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|.....++.++.-.+. .... + ....+.+.+.++.+++ ..++++..||+|++||..++ +.+|||+
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~ 162 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5544555555644332 1111 1 2234567788888898 67889999999999999887 7889999
Q ss_pred CCCCHHHHHHHHHH
Q 016864 199 TNLDLDTVKAICSE 212 (381)
Q Consensus 199 ~~l~~~~v~~~l~~ 212 (381)
+++|......+...
T Consensus 163 s~LD~~~r~~l~~~ 176 (356)
T PRK11650 163 SNLDAKLRVQMRLE 176 (356)
T ss_pred ccCCHHHHHHHHHH
Confidence 99998776665543
No 285
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.38 E-value=8.8e-13 Score=129.94 Aligned_cols=82 Identities=23% Similarity=0.238 Sum_probs=62.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccc---------------------------------cccccceeeeecEEEEEcCEE
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEV---------------------------------ASYEFTTLTCIPGVITYRGAK 113 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~---------------------------------~~~~~tT~~~~~g~i~~~g~~ 113 (381)
+|+++|+.++|||||+++|......+ .-..+.|+++....+.+++..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 79999999999999999995332111 012366788888888888999
Q ss_pred eeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 114 IQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 114 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
+.++||||..+.. ..+...+..+|++++|+|+..+
T Consensus 82 ~~liDtPGh~~f~-------~~~~~~~~~aD~allVVda~~G 116 (406)
T TIGR02034 82 FIVADTPGHEQYT-------RNMATGASTADLAVLLVDARKG 116 (406)
T ss_pred EEEEeCCCHHHHH-------HHHHHHHhhCCEEEEEEECCCC
Confidence 9999999975532 3445567899999999999866
No 286
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=1.5e-12 Score=125.61 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=99.3
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+. +.|. .....++..|..
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~~~g~~i~--~~~~----~~r~ig~vfQ~~ 87 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP-----------TEGQIFIDGEDVT--HRSI----QQRDICMVFQSY 87 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-----------CceEEEECCEECC--CCCH----HHCCEEEEeCCc
Confidence 3444444489999999999999999999999888 8999999997664 2221 122344555555
Q ss_pred cccCCcchhHHHH---hcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 138 STARTCNCILIVL---DAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 138 ~~~~~~d~il~vv---d~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
...++.++.-.+. ... ......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++
T Consensus 88 ~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~L 167 (351)
T PRK11432 88 ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNL 167 (351)
T ss_pred ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 5566666644332 211 122335677888888888 56888999999999999887 7789999999
Q ss_pred CHHHHHHHHHH
Q 016864 202 DLDTVKAICSE 212 (381)
Q Consensus 202 ~~~~v~~~l~~ 212 (381)
|......+...
T Consensus 168 D~~~r~~l~~~ 178 (351)
T PRK11432 168 DANLRRSMREK 178 (351)
T ss_pred CHHHHHHHHHH
Confidence 99877665543
No 287
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.38 E-value=6.9e-12 Score=111.00 Aligned_cols=83 Identities=23% Similarity=0.219 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++.+.....+ ..+..|.-+...-.+.+++ ..+.++||+|....... . ...++++
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l-----~--~~~~~~a 75 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFP-KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRL-----R--TLSYPQT 75 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC-cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhh-----h--hhhccCC
Confidence 68999999999999999999864322 2333333332233344555 46788999997543210 1 1235789
Q ss_pred chhHHHHhcCCCh
Q 016864 144 NCILIVLDAIKPI 156 (381)
Q Consensus 144 d~il~vvd~~~~~ 156 (381)
|++++|+|..++.
T Consensus 76 ~~~ilvydit~~~ 88 (191)
T cd01875 76 NVFIICFSIASPS 88 (191)
T ss_pred CEEEEEEECCCHH
Confidence 9999999998764
No 288
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.38 E-value=1.5e-12 Score=119.60 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=82.3
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.... .......++..
T Consensus 20 ~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~v~ 85 (243)
T TIGR02315 20 NINLNIN--PGEFVAIIGPSGAGKSTLLRCINRLVEP-----------SSGSILLEGTDITKLRGKKL-RKLRRRIGMIF 85 (243)
T ss_pred cceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CccEEEECCEEhhhCCHHHH-HHHHhheEEEc
Confidence 3445544 4489999999999999999999998877 78999998876532211000 00001111111
Q ss_pred hhhcccCCcchhHHHHhc-------------CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce--------
Q 016864 135 QVISTARTCNCILIVLDA-------------IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN-------- 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~-------------~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~-------- 191 (381)
+........++.-.+.-. ..+....+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 86 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 165 (243)
T TIGR02315 86 QHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPD 165 (243)
T ss_pred CCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 111112222222211100 0112334567778888888 55788899999999997765
Q ss_pred -eeecccCCCCCHHHHHH
Q 016864 192 -FTSTVTNTNLDLDTVKA 208 (381)
Q Consensus 192 -i~~~~~~~~l~~~~v~~ 208 (381)
+.+|||++++|......
T Consensus 166 llllDEPt~~LD~~~~~~ 183 (243)
T TIGR02315 166 LILADEPIASLDPKTSKQ 183 (243)
T ss_pred EEEEeCCcccCCHHHHHH
Confidence 44556665555544433
No 289
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.37 E-value=2.2e-12 Score=124.87 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=92.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.+............++..|.
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 84 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP-----------QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQD 84 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccccchhhCCEEEEcCC
Confidence 34444444589999999999999999999999877 8899999887653110000000011122233333
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHHH
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDT 205 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~ 205 (381)
...++..++.-.+.-... ....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++|...
T Consensus 85 ~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~ 163 (352)
T PRK11144 85 ARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred cccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHH
Confidence 333344444322211111 1223457778888888 56888999999999998886 77799999999877
Q ss_pred HHHHHHH
Q 016864 206 VKAICSE 212 (381)
Q Consensus 206 v~~~l~~ 212 (381)
...++..
T Consensus 164 ~~~l~~~ 170 (352)
T PRK11144 164 KRELLPY 170 (352)
T ss_pred HHHHHHH
Confidence 6655443
No 290
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.37 E-value=6.1e-12 Score=110.45 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=56.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++.+.+..- ...+..|..+...-.+.+++ ..+.++||+|...... -....++++
T Consensus 6 ~KivvvGd~~vGKTsli~~~~~~~f-~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~-------~~~~~~~~a 77 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-------VRPLSYPDS 77 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHh-------hhhhhcCCC
Confidence 6899999999999999999987542 23444444333333455555 4678999999643221 111246889
Q ss_pred chhHHHHhcCCCh
Q 016864 144 NCILIVLDAIKPI 156 (381)
Q Consensus 144 d~il~vvd~~~~~ 156 (381)
|++++|+|.+++.
T Consensus 78 d~~ilvyDit~~~ 90 (182)
T cd04172 78 DAVLICFDISRPE 90 (182)
T ss_pred CEEEEEEECCCHH
Confidence 9999999988763
No 291
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.37 E-value=1.8e-12 Score=120.96 Aligned_cols=139 Identities=16% Similarity=0.158 Sum_probs=80.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..... ......+...+.
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~i~~v~q~ 92 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP-----------DHGEILFDGENIPAMSRSRLY-TVRKRMSMLFQS 92 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEccccChhhHH-HHhhcEEEEecc
Confidence 33444444489999999999999999999999877 789999988765322110000 000111111121
Q ss_pred hcccCCcch---hHHHHhcC---CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 137 ISTARTCNC---ILIVLDAI---KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 137 ~~~~~~~d~---il~vvd~~---~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
...+...++ +.+..... ........+...++.+++ ..++++..||+|+++|..++ +.+|||++
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 172 (269)
T PRK11831 93 GALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFV 172 (269)
T ss_pred cccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 112222222 22211111 112223456677888888 46788999999999996665 44445555
Q ss_pred CCCHHHHH
Q 016864 200 NLDLDTVK 207 (381)
Q Consensus 200 ~l~~~~v~ 207 (381)
++|.....
T Consensus 173 ~LD~~~~~ 180 (269)
T PRK11831 173 GQDPITMG 180 (269)
T ss_pred cCCHHHHH
Confidence 55544433
No 292
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.37 E-value=6.4e-12 Score=114.25 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=56.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++.+++... ...+..|..+...-.+.+++ ..+.++||+|..... ......++++
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~F-~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~-------~~~~~~~~~a 85 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDCY-PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYD-------NVRPLCYSDS 85 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCCC-CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhH-------HHHHHHcCCC
Confidence 6899999999999999999986532 23343343322223355555 467899999964321 1111246899
Q ss_pred chhHHHHhcCCCh
Q 016864 144 NCILIVLDAIKPI 156 (381)
Q Consensus 144 d~il~vvd~~~~~ 156 (381)
|++++|+|.+++.
T Consensus 86 d~vIlVyDit~~~ 98 (232)
T cd04174 86 DAVLLCFDISRPE 98 (232)
T ss_pred cEEEEEEECCChH
Confidence 9999999998764
No 293
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.37 E-value=8.2e-13 Score=137.52 Aligned_cols=177 Identities=21% Similarity=0.193 Sum_probs=107.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE-EeeecCcccccccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA-KIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~-~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
++++....+.+++|+|+||||||||+++|+|...+ ..|.+.+++. .+..+....... ......+
T Consensus 21 ~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p-----------~~G~I~~~~~~~~~~l~q~~~~~----~~~~v~~ 85 (635)
T PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL-----------DDGRIIYEQDLIVARLQQDPPRN----VEGTVYD 85 (635)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCeEEEeCCCCEEEEeccCCCCC----CCCCHHH
Confidence 34444444589999999999999999999998777 7888887652 122211100000 0001111
Q ss_pred hh-----------ccc-------C---CcchhHHH------HhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccc
Q 016864 136 VI-----------STA-------R---TCNCILIV------LDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKG 188 (381)
Q Consensus 136 ~~-----------~~~-------~---~~d~il~v------vd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~ 188 (381)
.. ... . ..+.+... ++..........+...+..+++..++++..||+|+++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqRv 165 (635)
T PRK11147 86 FVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKA 165 (635)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHHH
Confidence 00 000 0 00101000 111111122345777888889877888999999999995
Q ss_pred cceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHH-HhcCCC
Q 016864 189 GINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEI-LDKLPH 267 (381)
Q Consensus 189 ~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~-l~~~~~ 267 (381)
.++ ...+..++++++|||| |++|..+.+++.. +..+..
T Consensus 166 ~LA--------------------raL~~~P~lLLLDEPt---------------------~~LD~~~~~~L~~~L~~~~~ 204 (635)
T PRK11147 166 ALG--------------------RALVSNPDVLLLDEPT---------------------NHLDIETIEWLEGFLKTFQG 204 (635)
T ss_pred HHH--------------------HHHhcCCCEEEEcCCC---------------------CccCHHHHHHHHHHHHhCCC
Confidence 443 3335566777788887 8888877777644 345566
Q ss_pred eeeecccccccHHHHHHHHHHH
Q 016864 268 YCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 268 ~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
+|++++|+...++.+++.++.+
T Consensus 205 tvlivsHd~~~l~~~~d~i~~L 226 (635)
T PRK11147 205 SIIFISHDRSFIRNMATRIVDL 226 (635)
T ss_pred EEEEEeCCHHHHHHhcCeEEEE
Confidence 7888888888888887776653
No 294
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.37 E-value=2.1e-12 Score=115.22 Aligned_cols=136 Identities=16% Similarity=0.182 Sum_probs=82.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++.. +.+++|+|+||+|||||+++|+|...+ ..|.+.++|..+.... . ......+...
T Consensus 18 ~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~--~---~~~~~i~~~~ 79 (201)
T cd03231 18 GLSFTLAA--GEALQVTGPNGSGKTTLLRILAGLSPP-----------LAGRVLLNGGPLDFQR--D---SIARGLLYLG 79 (201)
T ss_pred cceEEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEeccccc--H---HhhhheEEec
Confidence 44555554 489999999999999999999998877 7899988886653211 0 0011111111
Q ss_pred hhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCH
Q 016864 135 QVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDL 203 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~ 203 (381)
+........++.-.+.... .....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++|.
T Consensus 80 q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 158 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWH-ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158 (201)
T ss_pred cccccCCCcCHHHHHHhhc-ccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 1111112222222221111 11134456777788888 46778899999999997665 555666666665
Q ss_pred HHHHHH
Q 016864 204 DTVKAI 209 (381)
Q Consensus 204 ~~v~~~ 209 (381)
.....+
T Consensus 159 ~~~~~l 164 (201)
T cd03231 159 AGVARF 164 (201)
T ss_pred HHHHHH
Confidence 544443
No 295
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.37 E-value=1.9e-12 Score=125.15 Aligned_cols=138 Identities=19% Similarity=0.173 Sum_probs=99.3
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+. +.+. .....++..|..
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~~~--~~~~----~~r~ig~v~Q~~ 85 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-----------TAGTIYQGGRDIT--RLPP----QKRDYGIVFQSY 85 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-----------CceEEEECCEECC--CCCH----HHCCEEEEeCCc
Confidence 3444444489999999999999999999999888 8999999998763 2221 123344555555
Q ss_pred cccCCcchhHHHHhc---CC--ChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 138 STARTCNCILIVLDA---IK--PITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 138 ~~~~~~d~il~vvd~---~~--~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
...++.++.-.+.-. .. .......+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++
T Consensus 86 ~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~L 165 (353)
T TIGR03265 86 ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSAL 165 (353)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 556666664444221 11 12335567888899998 57889999999999998886 7789999999
Q ss_pred CHHHHHHHHHH
Q 016864 202 DLDTVKAICSE 212 (381)
Q Consensus 202 ~~~~v~~~l~~ 212 (381)
|......+...
T Consensus 166 D~~~r~~l~~~ 176 (353)
T TIGR03265 166 DARVREHLRTE 176 (353)
T ss_pred CHHHHHHHHHH
Confidence 98766655443
No 296
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.37 E-value=1.9e-12 Score=118.95 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=81.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccc--cccccCCCcchh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGI--IEGAKDGKGRGR 134 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~--~~~~~~~~~~~~ 134 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++........ ........+...
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (242)
T PRK11124 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP-----------RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVF 88 (242)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEecccccccchhhHHHHHhheEEEe
Confidence 33444444589999999999999999999998877 88999999876521100000 000011112222
Q ss_pred hhhcccCCcchhHHHH----hc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 135 QVISTARTCNCILIVL----DA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv----d~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
+........++.-.+. .. .......+.+.+.+..+++ ..++.+..||+|+++|..++ +.+|||
T Consensus 89 q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP 168 (242)
T PRK11124 89 QQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168 (242)
T ss_pred cCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2222222233322221 11 1112223456777888888 56788899999999996665 444555
Q ss_pred CCCCCHHHHH
Q 016864 198 NTNLDLDTVK 207 (381)
Q Consensus 198 ~~~l~~~~v~ 207 (381)
++++|.....
T Consensus 169 t~~LD~~~~~ 178 (242)
T PRK11124 169 TAALDPEITA 178 (242)
T ss_pred CCcCCHHHHH
Confidence 5555554433
No 297
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.37 E-value=2.1e-12 Score=124.81 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=96.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.+ ......++..|.
T Consensus 20 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~i~g~~i~~~~------~~~r~i~~v~Q~ 82 (353)
T PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ-----------TSGHIRFHGTDVSRLH------ARDRKVGFVFQH 82 (353)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCC------HHHCCEEEEecC
Confidence 34444444589999999999999999999999877 8899999997664221 111223344444
Q ss_pred hcccCCcchhHHHHhc---------CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecc
Q 016864 137 ISTARTCNCILIVLDA---------IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~---------~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
....+..++.-.+.-. .......+.+.+.++.+++ ..++++..||+|+++|..++ +.+||
T Consensus 83 ~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDE 162 (353)
T PRK10851 83 YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDE 162 (353)
T ss_pred cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4444555554333211 0112234567788888888 57889999999999998887 77899
Q ss_pred cCCCCCHHHHHHHHHH
Q 016864 197 TNTNLDLDTVKAICSE 212 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~~ 212 (381)
|++++|......+...
T Consensus 163 P~s~LD~~~r~~l~~~ 178 (353)
T PRK10851 163 PFGALDAQVRKELRRW 178 (353)
T ss_pred CCccCCHHHHHHHHHH
Confidence 9999999876665443
No 298
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.37 E-value=2e-12 Score=125.79 Aligned_cols=138 Identities=19% Similarity=0.173 Sum_probs=94.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-. +- .....++..
T Consensus 21 ~vsl~i~--~Ge~~~l~G~nGsGKSTLL~~iaGl~~p-----------~~G~I~~~g~~i~~~--~~----~~~~i~~v~ 81 (369)
T PRK11000 21 DINLDIH--EGEFVVFVGPSGCGKSTLLRMIAGLEDI-----------TSGDLFIGEKRMNDV--PP----AERGVGMVF 81 (369)
T ss_pred eeEEEEc--CCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCCC--CH----hHCCEEEEe
Confidence 3445544 4489999999999999999999999877 889999998766421 11 011223333
Q ss_pred hhhcccCCcchhHHHH---hcCC-C-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIVL---DAIK-P-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv---d~~~-~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|.....+..++.-.+. .... . ....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||+
T Consensus 82 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPt 161 (369)
T PRK11000 82 QSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPL 161 (369)
T ss_pred CCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3333334444432221 1111 1 2234567788888998 56788999999999998887 7889999
Q ss_pred CCCCHHHHHHHHH
Q 016864 199 TNLDLDTVKAICS 211 (381)
Q Consensus 199 ~~l~~~~v~~~l~ 211 (381)
+++|......++.
T Consensus 162 s~LD~~~~~~l~~ 174 (369)
T PRK11000 162 SNLDAALRVQMRI 174 (369)
T ss_pred ccCCHHHHHHHHH
Confidence 9999887665544
No 299
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.37 E-value=1.7e-12 Score=119.16 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=73.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+... ......+...
T Consensus 21 ~~sl~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~~~ 84 (241)
T PRK10895 21 DVSLTVN--SGEIVGLLGPNGAGKTTTFYMVVGIVPR-----------DAGNIIIDDEDISLLPLHA---RARRGIGYLP 84 (241)
T ss_pred eeeEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHHH---HHHhCeEEec
Confidence 3445544 4489999999999999999999998877 7899999887653221100 0011112222
Q ss_pred hhhcccCCcchhHHHH---hcC---CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 135 QVISTARTCNCILIVL---DAI---KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv---d~~---~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
+........++.-.+. ... .+......+.+.++.+++ ..+.++..||+|+++|..++
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 85 QEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred cCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHH
Confidence 2211222222221111 111 112234556778888888 45778899999999996654
No 300
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.36 E-value=1.6e-12 Score=117.11 Aligned_cols=132 Identities=17% Similarity=0.132 Sum_probs=78.5
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+.+++|+|+||+|||||+++|+|...+ ..|.+.++|.++...+. ....++..
T Consensus 29 ~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~i~~~~~-------~~~i~~~~ 88 (214)
T PRK13543 29 PLDFHVD--AGEALLVQGDNGAGKTTLLRVLAGLLHV-----------ESGQIQIDGKTATRGDR-------SRFMAYLG 88 (214)
T ss_pred cceEEEC--CCCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CCeeEEECCEEccchhh-------hhceEEee
Confidence 3444544 4589999999999999999999999877 78999998876532110 00111111
Q ss_pred hhhcccCCcchhHHH---HhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 135 QVISTARTCNCILIV---LDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
+........++...+ .... .....+.+.+.+..+++ ..++++..||+|+++|..++ +.+|||+++
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 167 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLH-GRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhc-CCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 111111222222211 1111 11123445667777777 46888899999999996665 444555555
Q ss_pred CCHHHHH
Q 016864 201 LDLDTVK 207 (381)
Q Consensus 201 l~~~~v~ 207 (381)
+|.+..+
T Consensus 168 LD~~~~~ 174 (214)
T PRK13543 168 LDLEGIT 174 (214)
T ss_pred CCHHHHH
Confidence 5554443
No 301
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.36 E-value=8.7e-13 Score=132.12 Aligned_cols=84 Identities=24% Similarity=0.252 Sum_probs=62.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccc---------------------------------cccceeeeecEEEEEcC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVAS---------------------------------YEFTTLTCIPGVITYRG 111 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~---------------------------------~~~tT~~~~~g~i~~~g 111 (381)
..+|+++|++|+|||||+++|+.....+.. ..+.|+++....+.+++
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~ 106 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK 106 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC
Confidence 379999999999999999999644321110 13567777777777788
Q ss_pred EEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 112 AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 112 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.++.++||||..+. ...+...+..+|++++|+|+..+
T Consensus 107 ~~i~~iDTPGh~~f-------~~~~~~~l~~aD~allVVDa~~G 143 (474)
T PRK05124 107 RKFIIADTPGHEQY-------TRNMATGASTCDLAILLIDARKG 143 (474)
T ss_pred cEEEEEECCCcHHH-------HHHHHHHHhhCCEEEEEEECCCC
Confidence 89999999996432 23444456899999999999765
No 302
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.36 E-value=2.5e-12 Score=116.39 Aligned_cols=136 Identities=22% Similarity=0.231 Sum_probs=80.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-. . .......+...
T Consensus 20 ~is~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~--~---~~~~~~i~~v~ 81 (220)
T cd03263 20 DLSLNVY--KGEIFGLLGHNGAGKTTTLKMLTGELRP-----------TSGTAYINGYSIRTD--R---KAARQSLGYCP 81 (220)
T ss_pred ceEEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEecccc--h---HHHhhhEEEec
Confidence 3444544 4489999999999999999999999877 789999988765311 0 00001111111
Q ss_pred hhhcccCCcch---hHHHHhcC-CC-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNC---ILIVLDAI-KP-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~---il~vvd~~-~~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
+........++ +.+..... .+ ....+.+.+.++.+++ ...+++..||+|+++|..++ +.+|||+
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 161 (220)
T cd03263 82 QFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPT 161 (220)
T ss_pred CcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 21111122222 21111111 11 2223456778888888 45778899999999997665 4445555
Q ss_pred CCCCHHHHHH
Q 016864 199 TNLDLDTVKA 208 (381)
Q Consensus 199 ~~l~~~~v~~ 208 (381)
+++|......
T Consensus 162 ~~LD~~~~~~ 171 (220)
T cd03263 162 SGLDPASRRA 171 (220)
T ss_pred CCCCHHHHHH
Confidence 5555544443
No 303
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.36 E-value=1.5e-12 Score=116.70 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=79.3
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-. .......+...
T Consensus 18 ~~~~~i~--~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~------~~~~~~i~~~~ 78 (208)
T cd03268 18 DISLHVK--KGEIYGFLGPNGAGKTTTMKIILGLIKP-----------DSGEITFDGKSYQKN------IEALRRIGALI 78 (208)
T ss_pred eeEEEEc--CCcEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCCcccch------HHHHhhEEEec
Confidence 3444444 4489999999999999999999998877 789999988654210 00000111111
Q ss_pred hhhcccCCcchhH---HHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 135 QVISTARTCNCIL---IVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 135 ~~~~~~~~~d~il---~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
+........++.. +...... . ..+.+...++.+++ ..++++..||+|+++|..++ +.+|||+++
T Consensus 79 q~~~~~~~~tv~e~l~~~~~~~~-~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 79 EAPGFYPNLTARENLRLLARLLG-I-RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred CCCccCccCcHHHHHHHHHHhcC-C-cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 1111122222221 1111111 1 23456677888888 56788999999999996665 444555555
Q ss_pred CCHHHHHH
Q 016864 201 LDLDTVKA 208 (381)
Q Consensus 201 l~~~~v~~ 208 (381)
+|......
T Consensus 157 LD~~~~~~ 164 (208)
T cd03268 157 LDPDGIKE 164 (208)
T ss_pred CCHHHHHH
Confidence 55544443
No 304
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.36 E-value=1.7e-12 Score=126.93 Aligned_cols=140 Identities=20% Similarity=0.264 Sum_probs=90.4
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+ ....+...|.
T Consensus 21 ~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p-----------~sG~I~l~G~~i~~~~~~~~----~~~ig~v~q~ 85 (402)
T PRK09536 21 GVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP-----------TAGTVLVAGDDVEALSARAA----SRRVASVPQD 85 (402)
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-----------CCcEEEECCEEcCcCCHHHH----hcceEEEccC
Confidence 33444444589999999999999999999998877 88999999876542221111 1111111221
Q ss_pred hcccCCcchhHHHHhc-------CC--ChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecc
Q 016864 137 ISTARTCNCILIVLDA-------IK--PITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~-------~~--~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
.......++.-.+.-. .. ...+.+.+.+.++.+++ ..++++..||+|+++|..++ +.+||
T Consensus 86 ~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDE 165 (402)
T PRK09536 86 TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDE 165 (402)
T ss_pred CCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 1111122222111100 11 23445677888888888 56788999999999998887 77899
Q ss_pred cCCCCCHHHHHHHHH
Q 016864 197 TNTNLDLDTVKAICS 211 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~ 211 (381)
|++++|......++.
T Consensus 166 PtsgLD~~~~~~l~~ 180 (402)
T PRK09536 166 PTASLDINHQVRTLE 180 (402)
T ss_pred CcccCCHHHHHHHHH
Confidence 999999876555443
No 305
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.36 E-value=2.5e-12 Score=114.34 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=86.7
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+++|++. .+..+||+|++|||||||.++|+|...+ ..|.+.++|.++.-..-.. .......+..
T Consensus 25 ~VS~~i~--~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-----------~~G~I~~~G~~~~~~~~~~---~~~~~VQmVF 88 (252)
T COG1124 25 NVSLEIE--RGETLGIVGESGSGKSTLARLLAGLEKP-----------SSGSILLDGKPLAPKKRAK---AFYRPVQMVF 88 (252)
T ss_pred ceeEEec--CCCEEEEEcCCCCCHHHHHHHHhcccCC-----------CCceEEECCcccCccccch---hhccceeEEe
Confidence 4445544 4489999999999999999999999988 8899999885433210000 0000000001
Q ss_pred hhh--cccCCcchhHHHHhc---CCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccce---------eeeccc
Q 016864 135 QVI--STARTCNCILIVLDA---IKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 135 ~~~--~~~~~~d~il~vvd~---~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
|-. +.-+..++=-.+-++ ..-....+++.+.|..+|+ .+.++|..||+|++||.+|+ +++|||
T Consensus 89 QDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 89 QDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred cCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 000 000111111111111 1112233448889999999 78899999999999999887 777888
Q ss_pred CCCCCHHHHHHHHH
Q 016864 198 NTNLDLDTVKAICS 211 (381)
Q Consensus 198 ~~~l~~~~v~~~l~ 211 (381)
++.+|...-..+|.
T Consensus 169 tSaLD~siQa~Iln 182 (252)
T COG1124 169 TSALDVSVQAQILN 182 (252)
T ss_pred hhhhcHHHHHHHHH
Confidence 88888765555444
No 306
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.36 E-value=3.3e-12 Score=114.25 Aligned_cols=136 Identities=14% Similarity=0.125 Sum_probs=82.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.. ..+ ....+...
T Consensus 19 ~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~v~~~g~~~~~~~-~~~----~~~~~~~~ 80 (204)
T PRK13538 19 GLSFTLN--AGELVQIEGPNGAGKTSLLRILAGLARP-----------DAGEVLWQGEPIRRQR-DEY----HQDLLYLG 80 (204)
T ss_pred cceEEEC--CCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEcccch-HHh----hhheEEeC
Confidence 4445544 4489999999999999999999999877 7899999887653211 000 00011111
Q ss_pred hhhcccCCcchhHHH---HhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 135 QVISTARTCNCILIV---LDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
+........++.-.+ .... .....+.+...++.+++ ..++++..||+|+++|..++ +.+|||+++
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 159 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLH-GPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhc-CccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 111111222332221 1111 11234567778888888 46788899999999997665 445566655
Q ss_pred CCHHHHHHH
Q 016864 201 LDLDTVKAI 209 (381)
Q Consensus 201 l~~~~v~~~ 209 (381)
+|......+
T Consensus 160 LD~~~~~~l 168 (204)
T PRK13538 160 IDKQGVARL 168 (204)
T ss_pred CCHHHHHHH
Confidence 555544433
No 307
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=2e-12 Score=118.00 Aligned_cols=122 Identities=20% Similarity=0.273 Sum_probs=73.3
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..... ......++..+..
T Consensus 24 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~-~~~~~i~~~~q~~ 91 (233)
T cd03258 24 VSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-----------TSGSVLVDGTDLTLLSGKELR-KARRRIGMIFQHF 91 (233)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcccCCHHHHH-HHHhheEEEccCc
Confidence 3444444589999999999999999999999877 789999998765432111100 0011111222222
Q ss_pred cccCCcch---hHHHHhc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 138 STARTCNC---ILIVLDA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 138 ~~~~~~d~---il~vvd~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
......++ +.+.... .......+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 92 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 152 (233)
T cd03258 92 NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIA 152 (233)
T ss_pred ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHH
Confidence 12222222 2211111 1112234466778888888 45778899999999996655
No 308
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.36 E-value=2e-12 Score=116.29 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=80.4
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++.. + .++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+ +.+ ....+...
T Consensus 18 ~vs~~i~~--g-~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~-~~~----~~~i~~~~ 78 (211)
T cd03264 18 GVSLTLGP--G-MYGLLGPNGAGKTTLMRILATLTPP-----------SSGTIRIDGQDVLKQP-QKL----RRRIGYLP 78 (211)
T ss_pred ceeEEEcC--C-cEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCCccccch-HHH----HhheEEec
Confidence 44555554 4 9999999999999999999998877 7899999886543211 000 01111112
Q ss_pred hhhcccCCcch---hHHH--HhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNC---ILIV--LDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~---il~v--vd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
+........++ +.+. ..........+.+...++.+++ ..+.++..||+|+++|..++ +.+|||+
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 21111222222 2111 1111112224556778888888 45788999999999997665 4455555
Q ss_pred CCCCHHHHHH
Q 016864 199 TNLDLDTVKA 208 (381)
Q Consensus 199 ~~l~~~~v~~ 208 (381)
+++|......
T Consensus 159 ~~LD~~~~~~ 168 (211)
T cd03264 159 AGLDPEERIR 168 (211)
T ss_pred ccCCHHHHHH
Confidence 5555544443
No 309
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.36 E-value=1.8e-12 Score=122.93 Aligned_cols=138 Identities=18% Similarity=0.201 Sum_probs=85.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++ ..+..+||+|+||||||||+++|+|...+ ..|.+.++|.++.- + +. ......+...
T Consensus 20 ~is~~i--~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~-----------~~G~i~i~g~~~~~-~-~~---~~~~~ig~~~ 81 (301)
T TIGR03522 20 EVSFEA--QKGRIVGFLGPNGAGKSTTMKIITGYLPP-----------DSGSVQVCGEDVLQ-N-PK---EVQRNIGYLP 81 (301)
T ss_pred EeEEEE--eCCeEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccc-C-hH---HHHhceEEec
Confidence 344444 44589999999999999999999998877 88999999876532 1 10 0011112222
Q ss_pred hhhcccCCcchhHHH---HhcCC-C-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIV---LDAIK-P-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~~~-~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
+........++.-++ ..... + ....+.+...++.+++ ..++++..||+|+++|..++ +.+|||+
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 221122222332222 11111 1 2234567788888888 46788999999999997765 5566666
Q ss_pred CCCCHHHHHHHH
Q 016864 199 TNLDLDTVKAIC 210 (381)
Q Consensus 199 ~~l~~~~v~~~l 210 (381)
+++|....+.+.
T Consensus 162 ~gLD~~~~~~l~ 173 (301)
T TIGR03522 162 TGLDPNQLVEIR 173 (301)
T ss_pred ccCCHHHHHHHH
Confidence 666665554443
No 310
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.35 E-value=4.3e-12 Score=113.60 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=91.3
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++.. +..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-+..-..........+...
T Consensus 16 ~vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 82 (206)
T TIGR03608 16 DLNLTIEK--GKMYAIIGESGSGKSTLLNIIGLLEKF-----------DSGQVYLNGKETPPLNSKKASKFRREKLGYLF 82 (206)
T ss_pred ceEEEEeC--CcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccchhhHHHHHHhCeeEEe
Confidence 44555554 489999999999999999999998877 78999998876431110000000011111112
Q ss_pred hhhcccCCcchhH---HHHh-c-CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCIL---IVLD-A-IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il---~vvd-~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
+........++.- +... . .......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||+
T Consensus 83 q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt 162 (206)
T TIGR03608 83 QNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPT 162 (206)
T ss_pred cchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 2111122222221 1111 1 1112334567788888888 56788899999999998886 7889999
Q ss_pred CCCCHHHHHHHHHH
Q 016864 199 TNLDLDTVKAICSE 212 (381)
Q Consensus 199 ~~l~~~~v~~~l~~ 212 (381)
+++|......+++-
T Consensus 163 ~~LD~~~~~~l~~~ 176 (206)
T TIGR03608 163 GSLDPKNRDEVLDL 176 (206)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999877766553
No 311
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.35 E-value=2.9e-12 Score=117.57 Aligned_cols=138 Identities=16% Similarity=0.151 Sum_probs=81.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-...+. .......++..
T Consensus 19 ~~s~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~--~~~~~~i~~~~ 83 (240)
T PRK09493 19 NIDLNID--QGEVVVIIGPSGSGKSTLLRCINKLEEI-----------TSGDLIVDGLKVNDPKVDE--RLIRQEAGMVF 83 (240)
T ss_pred eeeEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCChhH--HHHhhceEEEe
Confidence 3444444 4489999999999999999999998877 8899999987654211000 00001111112
Q ss_pred hhhcccCCcchhHHHH----hc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 135 QVISTARTCNCILIVL----DA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv----d~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
+........++.-.+. .. .......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||
T Consensus 84 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 163 (240)
T PRK09493 84 QQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEP 163 (240)
T ss_pred cccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2111222223322111 11 1112234456778888888 46788899999999997665 444555
Q ss_pred CCCCCHHHHH
Q 016864 198 NTNLDLDTVK 207 (381)
Q Consensus 198 ~~~l~~~~v~ 207 (381)
++++|.....
T Consensus 164 ~~~LD~~~~~ 173 (240)
T PRK09493 164 TSALDPELRH 173 (240)
T ss_pred cccCCHHHHH
Confidence 5555554433
No 312
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=6.3e-12 Score=115.08 Aligned_cols=135 Identities=17% Similarity=0.165 Sum_probs=99.8
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|.|++|||||||+++|+|...| +.|.|.++|..+ .|+.- .......+|+..|..
T Consensus 21 i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p-----------~~G~I~~~~~~l--~D~~~-~~~~~R~VGfvFQ~Y 86 (345)
T COG1118 21 ISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-----------DAGRIRLNGRVL--FDVSN-LAVRDRKVGFVFQHY 86 (345)
T ss_pred ceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC-----------CCceEEECCEec--cchhc-cchhhcceeEEEech
Confidence 3444444589999999999999999999999998 999999998732 34333 222234456777777
Q ss_pred cccCCcchhHHHHhc---C--CC--hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 138 STARTCNCILIVLDA---I--KP--ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 138 ~~~~~~d~il~vvd~---~--~~--~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
.+++++++.-.+--+ . .| .....++.+.|..+.+ ...++|..||+|++||..++ +.+|||+.
T Consensus 87 ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ 166 (345)
T COG1118 87 ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFG 166 (345)
T ss_pred hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCch
Confidence 788888775444221 1 12 3456677788888887 67889999999999998886 77799999
Q ss_pred CCCHHHH
Q 016864 200 NLDLDTV 206 (381)
Q Consensus 200 ~l~~~~v 206 (381)
++|....
T Consensus 167 ALDa~vr 173 (345)
T COG1118 167 ALDAKVR 173 (345)
T ss_pred hhhHHHH
Confidence 9998643
No 313
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.35 E-value=3.2e-12 Score=123.75 Aligned_cols=139 Identities=19% Similarity=0.193 Sum_probs=97.6
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeec--EEEEEcCEEeeecCcccccccccCCCcc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIP--GVITYRGAKIQLLDLPGIIEGAKDGKGR 132 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~--g~i~~~g~~i~l~DtpG~~~~~~~~~~~ 132 (381)
+.++++. .+..++|+|+||||||||+++|+|...+ .. |.+.++|..+. +.+- .....++
T Consensus 23 ~vsl~i~--~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~~~G~i~~~g~~~~--~~~~----~~r~ig~ 83 (362)
T TIGR03258 23 DLSLEIE--AGELLALIGKSGCGKTTLLRAIAGFVKA-----------AGLTGRIAIADRDLT--HAPP----HKRGLAL 83 (362)
T ss_pred eeEEEEC--CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCCEEEEECCEECC--CCCH----HHCCEEE
Confidence 3444444 4479999999999999999999999877 77 99999997663 2111 1123344
Q ss_pred hhhhhcccCCcchhHHHH---hcCC-C-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecc
Q 016864 133 GRQVISTARTCNCILIVL---DAIK-P-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 133 ~~~~~~~~~~~d~il~vv---d~~~-~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
..|.....+..++.-.+. .... + ......+.+.++.+++ ..++++..||+|+++|..++ +.+||
T Consensus 84 vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDE 163 (362)
T TIGR03258 84 LFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDE 163 (362)
T ss_pred EECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 445444555555543332 2111 2 2334567788888888 57889999999999998887 77899
Q ss_pred cCCCCCHHHHHHHHHH
Q 016864 197 TNTNLDLDTVKAICSE 212 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~~ 212 (381)
|++++|......+...
T Consensus 164 P~s~LD~~~r~~l~~~ 179 (362)
T TIGR03258 164 PLSALDANIRANMREE 179 (362)
T ss_pred ccccCCHHHHHHHHHH
Confidence 9999999876666554
No 314
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=3.2e-12 Score=116.63 Aligned_cols=134 Identities=19% Similarity=0.202 Sum_probs=81.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. ....++..+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~------~~~i~~~~q~ 79 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP-----------ASGSLTLNGQDHTTTPPS------RRPVSMLFQE 79 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCeecCcCChh------hccEEEEecc
Confidence 34444444589999999999999999999999877 789999988765321110 0111111111
Q ss_pred hcccCCcchhHHHH---hcC-C-ChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIVL---DAI-K-PITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~vv---d~~-~-~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
.......++.-.+. ... . .....+.+.+.++.+++ ..++.+..||+|+++|..++ +.+|||+++
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~g 159 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSA 159 (232)
T ss_pred cccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 11122222222211 110 1 12334567788888888 57888999999999996665 444555555
Q ss_pred CCHHHHH
Q 016864 201 LDLDTVK 207 (381)
Q Consensus 201 l~~~~v~ 207 (381)
+|.....
T Consensus 160 LD~~~~~ 166 (232)
T PRK10771 160 LDPALRQ 166 (232)
T ss_pred CCHHHHH
Confidence 5554443
No 315
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.35 E-value=2.5e-12 Score=116.69 Aligned_cols=124 Identities=20% Similarity=0.261 Sum_probs=68.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc--CE--EeeecCcccccccccCCCcc
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR--GA--KIQLLDLPGIIEGAKDGKGR 132 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~--g~--~i~l~DtpG~~~~~~~~~~~ 132 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++ |. .+.-.+.....+......++
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~ 94 (224)
T TIGR02324 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-----------DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGY 94 (224)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEEecCCCccchhhcCHHHHHHHHhcceEE
Confidence 33444444589999999999999999999999777 77888886 32 22111100000000011111
Q ss_pred hhhhhcccCCcchhHHH----Hhc-CCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccce
Q 016864 133 GRQVISTARTCNCILIV----LDA-IKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 133 ~~~~~~~~~~~d~il~v----vd~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~ 191 (381)
..+........++.-.+ ... .......+.+.+.++.+++. .++++..||+|+++|..++
T Consensus 95 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 161 (224)
T TIGR02324 95 VSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIA 161 (224)
T ss_pred EecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHH
Confidence 12221122222221111 111 11122344667778888882 3568899999999996654
No 316
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.35 E-value=3.1e-12 Score=115.89 Aligned_cols=135 Identities=21% Similarity=0.199 Sum_probs=75.9
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..-. .....+...+..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~q~~ 84 (222)
T cd03224 19 VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP-----------RSGSIRFDGRDITGLPPHER---ARAGIGYVPEGR 84 (222)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcCCCCHHHH---HhcCeEEecccc
Confidence 3444444489999999999999999999999877 88999998876532211000 011122222222
Q ss_pred cccCCcchhHHHH---hcCCChHHHHHHHHHHHhc-cc--ccccCcCcccceeeccccce---------eeecccCCCCC
Q 016864 138 STARTCNCILIVL---DAIKPITHKRLIEKELEGF-GI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLD 202 (381)
Q Consensus 138 ~~~~~~d~il~vv---d~~~~~~~~~~i~~~l~~~-~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~ 202 (381)
......++.-.+. ...........+...++.+ ++ ..++++..||+|+++|..++ +.+|||++++|
T Consensus 85 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 164 (222)
T cd03224 85 RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLA 164 (222)
T ss_pred ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 2223333322221 1111111223344455555 24 56788899999999996655 44445554444
Q ss_pred HHHH
Q 016864 203 LDTV 206 (381)
Q Consensus 203 ~~~v 206 (381)
....
T Consensus 165 ~~~~ 168 (222)
T cd03224 165 PKIV 168 (222)
T ss_pred HHHH
Confidence 4433
No 317
>PLN03126 Elongation factor Tu; Provisional
Probab=99.35 E-value=4e-12 Score=126.95 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=65.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc----------------cccccccceeeeecEEEEEcCEEeeecCcccccccccC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS----------------EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD 128 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~----------------~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~ 128 (381)
..+|+++|++++|||||+++|++... +.....++|++.....+.+++..+.++||||..+..
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~-- 158 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV-- 158 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH--
Confidence 37899999999999999999985321 112235888888777777788999999999986643
Q ss_pred CCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.++...+..+|+.++|+|+..+
T Consensus 159 -----~~~~~g~~~aD~ailVVda~~G 180 (478)
T PLN03126 159 -----KNMITGAAQMDGAILVVSGADG 180 (478)
T ss_pred -----HHHHHHHhhCCEEEEEEECCCC
Confidence 4556667889999999999876
No 318
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.34 E-value=2e-12 Score=131.37 Aligned_cols=142 Identities=18% Similarity=0.144 Sum_probs=91.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++..+.+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.... ...+.++..|.
T Consensus 29 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~v~q~ 94 (510)
T PRK15439 29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-----------DSGTLEIGGNPCARLTPAKA---HQLGIYLVPQE 94 (510)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCCCCHHHH---HhCCEEEEecc
Confidence 33444444489999999999999999999999877 78999998876542211000 00111222222
Q ss_pred hcccCCcchhHHHHhcC-CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHH
Q 016864 137 ISTARTCNCILIVLDAI-KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLD 204 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~-~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~ 204 (381)
.......++.-.+.-.. ......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++|..
T Consensus 95 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~ 174 (510)
T PRK15439 95 PLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPA 174 (510)
T ss_pred CccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 12222233322221111 112234567788888888 56788999999999998887 7889999999998
Q ss_pred HHHHHHHH
Q 016864 205 TVKAICSE 212 (381)
Q Consensus 205 ~v~~~l~~ 212 (381)
....+++.
T Consensus 175 ~~~~l~~~ 182 (510)
T PRK15439 175 ETERLFSR 182 (510)
T ss_pred HHHHHHHH
Confidence 77666553
No 319
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.34 E-value=1.8e-12 Score=131.53 Aligned_cols=141 Identities=18% Similarity=0.183 Sum_probs=90.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++...+... ......++..|.
T Consensus 22 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~v~q~ 87 (501)
T PRK10762 22 GAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR-----------DAGSILYLGKEVTFNGPKS---SQEAGIGIIHQE 87 (501)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHHH---HHhCCEEEEEcc
Confidence 33444444589999999999999999999999877 7899999887653221100 001112222222
Q ss_pred hcccCCcchhHHHHhc---------CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecc
Q 016864 137 ISTARTCNCILIVLDA---------IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~---------~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
.......++.-.+.-. .+.....+.+.+.++.+++ ..++++..||+|+++|..++ +.+||
T Consensus 88 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 167 (501)
T PRK10762 88 LNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDE 167 (501)
T ss_pred hhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2222333332222111 0111223456778888888 46788999999999998887 77899
Q ss_pred cCCCCCHHHHHHHHH
Q 016864 197 TNTNLDLDTVKAICS 211 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~ 211 (381)
|++++|......+++
T Consensus 168 Pt~~LD~~~~~~l~~ 182 (501)
T PRK10762 168 PTDALTDTETESLFR 182 (501)
T ss_pred CcCCCCHHHHHHHHH
Confidence 999999977666544
No 320
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.34 E-value=3.3e-12 Score=117.32 Aligned_cols=137 Identities=18% Similarity=0.196 Sum_probs=80.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-.+..-. ...+.+...+.
T Consensus 20 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~q~ 85 (242)
T TIGR03411 20 DLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-----------DEGSVLFGGTDLTGLPEHQI---ARAGIGRKFQK 85 (242)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCeecCCCCHHHH---HhcCeeEeccc
Confidence 33444444589999999999999999999998877 78999998876532211000 00111121222
Q ss_pred hcccCCcchhHHH---HhcC----------CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------e
Q 016864 137 ISTARTCNCILIV---LDAI----------KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------F 192 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~~----------~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i 192 (381)
.......++.-.+ .... ........+.+.++.+++ ..++.+..||+|+++|..++ +
T Consensus 86 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~l 165 (242)
T TIGR03411 86 PTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLL 165 (242)
T ss_pred cccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1122222222111 1100 012234567778888888 56788999999999996665 4
Q ss_pred eecccCCCCCHHHHH
Q 016864 193 TSTVTNTNLDLDTVK 207 (381)
Q Consensus 193 ~~~~~~~~l~~~~v~ 207 (381)
.+|||++++|.....
T Consensus 166 llDEPt~~LD~~~~~ 180 (242)
T TIGR03411 166 LLDEPVAGMTDEETE 180 (242)
T ss_pred EecCCccCCCHHHHH
Confidence 445555555554433
No 321
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.34 E-value=3.7e-12 Score=113.60 Aligned_cols=137 Identities=16% Similarity=0.050 Sum_probs=80.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.- +...+. ...++..+.
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~v~~~g~~~~~-~~~~~~----~~i~~~~q~ 82 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-----------EKGEILFERQSIKK-DLCTYQ----KQLCFVGHR 82 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeeEEECCCcccc-CHHHHH----hheEEeccc
Confidence 33444444589999999999999999999998877 88999998876531 111110 111111111
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHHH
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDT 205 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~ 205 (381)
.......++.-.+.-..........+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++|...
T Consensus 83 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~ 162 (200)
T PRK13540 83 SGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS 162 (200)
T ss_pred cccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 11112222222211110000112356677777777 45677789999999997765 55566666666655
Q ss_pred HHHH
Q 016864 206 VKAI 209 (381)
Q Consensus 206 v~~~ 209 (381)
...+
T Consensus 163 ~~~l 166 (200)
T PRK13540 163 LLTI 166 (200)
T ss_pred HHHH
Confidence 4443
No 322
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.34 E-value=2.6e-12 Score=130.35 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=106.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+.+++|+|+||||||||+++|+|...+ ..|.+.++|.++... .+.. ......++..|.
T Consensus 271 ~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-----------~~G~i~~~g~~~~~~-~~~~--~~~~~i~~~~q~ 336 (501)
T PRK11288 271 PISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR-----------TAGQVYLDGKPIDIR-SPRD--AIRAGIMLCPED 336 (501)
T ss_pred ceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC-----------CCceEEECCEECCCC-CHHH--HHhCCCEEcCcC
Confidence 34444444589999999999999999999999877 789999988765321 0110 000111111111
Q ss_pred h---cccCCcchhHHHHhc-----------CCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccceeeecccCC
Q 016864 137 I---STARTCNCILIVLDA-----------IKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGINFTSTVTNT 199 (381)
Q Consensus 137 ~---~~~~~~d~il~vvd~-----------~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~i~~~~~~~ 199 (381)
. ......++.-.+... .......+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 337 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la-------- 408 (501)
T PRK11288 337 RKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILG-------- 408 (501)
T ss_pred HhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHH--------
Confidence 0 011111221111100 0112233467788888888 36788999999999995554
Q ss_pred CCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----HHHhcCCCeeeecccc
Q 016864 200 NLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----EILDKLPHYCPVSAHL 275 (381)
Q Consensus 200 ~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~l~~~~~~v~vSa~~ 275 (381)
.....+++++++|||| |.+|......+ ..+.+...+|++++|+
T Consensus 409 ------------~al~~~p~lllLDEPt---------------------~~LD~~~~~~l~~~l~~l~~~g~tviivsHd 455 (501)
T PRK11288 409 ------------RWLSEDMKVILLDEPT---------------------RGIDVGAKHEIYNVIYELAAQGVAVLFVSSD 455 (501)
T ss_pred ------------HHHccCCCEEEEcCCC---------------------CCCCHhHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 2224456666677776 66666655443 2334456678888999
Q ss_pred cccHHHHHHHHHH
Q 016864 276 EWNLDGLLEKIWE 288 (381)
Q Consensus 276 ~~gl~~L~~~i~~ 288 (381)
-..+.+++++++.
T Consensus 456 ~~~~~~~~d~i~~ 468 (501)
T PRK11288 456 LPEVLGVADRIVV 468 (501)
T ss_pred HHHHHhhCCEEEE
Confidence 8777777666543
No 323
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.34 E-value=4.1e-12 Score=117.81 Aligned_cols=140 Identities=19% Similarity=0.191 Sum_probs=81.7
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecC-ccccc--------cc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLD-LPGII--------EG 125 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~D-tpG~~--------~~ 125 (381)
+.+|++. .+..++|+|+||+|||||+++|+|...+ ..|.+.++|..+.... ..+.. ..
T Consensus 23 ~is~~i~--~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 89 (257)
T PRK10619 23 GVSLQAN--AGDVISIIGSSGSGKSTFLRCINFLEKP-----------SEGSIVVNGQTINLVRDKDGQLKVADKNQLRL 89 (257)
T ss_pred eeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcccccccccccccccchHHHH
Confidence 3444444 4589999999999999999999998877 7899999987653210 00000 00
Q ss_pred ccCCCcchhhhhcccCCcchhHHHH----hc--CCChHHHHHHHHHHHhccc-c--cccCcCcccceeeccccce-----
Q 016864 126 AKDGKGRGRQVISTARTCNCILIVL----DA--IKPITHKRLIEKELEGFGI-R--LNKQPPNLTFRKKDKGGIN----- 191 (381)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~d~il~vv----d~--~~~~~~~~~i~~~l~~~~~-~--~~~~~~~ls~~~~~r~~~~----- 191 (381)
.....++..+........++...+. .. .......+.+.+.++.+++ . ..+++..||+|+++|..++
T Consensus 90 ~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~ 169 (257)
T PRK10619 90 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM 169 (257)
T ss_pred HhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 0111222222222222233322221 11 1112334567788888888 2 2678899999999996654
Q ss_pred ----eeecccCCCCCHHHHH
Q 016864 192 ----FTSTVTNTNLDLDTVK 207 (381)
Q Consensus 192 ----i~~~~~~~~l~~~~v~ 207 (381)
+.+|||++++|.....
T Consensus 170 ~p~llllDEPt~~LD~~~~~ 189 (257)
T PRK10619 170 EPEVLLFDEPTSALDPELVG 189 (257)
T ss_pred CCCEEEEeCCcccCCHHHHH
Confidence 4444555555544333
No 324
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.34 E-value=2.7e-12 Score=127.38 Aligned_cols=151 Identities=20% Similarity=0.240 Sum_probs=99.6
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccc---cccccccceeeeecEEE------------E---E----------------
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFS---EVASYEFTTLTCIPGVI------------T---Y---------------- 109 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~---~~~~~~~tT~~~~~g~i------------~---~---------------- 109 (381)
...+||++|+-..|||||+.+|||... +-.-..+.|++.-.... . +
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 447999999999999999999998653 21223355544321111 0 0
Q ss_pred --cCEEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC--hHHHHHHHHHHHhcccccccCcCcccceee
Q 016864 110 --RGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP--ITHKRLIEKELEGFGIRLNKQPPNLTFRKK 185 (381)
Q Consensus 110 --~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~--~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~ 185 (381)
....+.++||||.... ...++..+..+|.+++|+|+..+ ..+......
T Consensus 113 ~~~~~~i~~IDtPGH~~f-------i~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~--------------------- 164 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDIL-------MATMLNGAAVMDAALLLIAANESCPQPQTSEHLA--------------------- 164 (460)
T ss_pred ccccceEeeeeCCCHHHH-------HHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH---------------------
Confidence 0236899999997543 35566667889999999999864 221111111
Q ss_pred ccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH----H
Q 016864 186 DKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE----I 261 (381)
Q Consensus 186 ~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~----~ 261 (381)
++..++ -+|.|+|+||+|+.+.++++ .
T Consensus 165 -----------------------i~~~lg--------------------------i~~iIVvlNKiDlv~~~~~~~~~~e 195 (460)
T PTZ00327 165 -----------------------AVEIMK--------------------------LKHIIILQNKIDLVKEAQAQDQYEE 195 (460)
T ss_pred -----------------------HHHHcC--------------------------CCcEEEEEecccccCHHHHHHHHHH
Confidence 111111 04789999999998654432 2
Q ss_pred Hh--------cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 262 LD--------KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 262 l~--------~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+. ...+++++||.+|.|++.|++.|.+.++
T Consensus 196 i~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 196 IRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 21 2457999999999999999999987554
No 325
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.34 E-value=3.2e-12 Score=124.13 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=96.3
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEE--eeec--CcccccccccCCC
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAK--IQLL--DLPGIIEGAKDGK 130 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~--i~l~--DtpG~~~~~~~~~ 130 (381)
+.+|++.. +..++|+|+||||||||+++|+|...+ ..|.+.++|.. +.+. +-..+.+......
T Consensus 42 ~vsf~i~~--Gei~~I~G~nGsGKSTLlr~L~Gl~~p-----------~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 42 NASLDIEE--GEICVLMGLSGSGKSSLLRAVNGLNPV-----------SRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred eeEEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 45555554 489999999999999999999999877 88999998853 1111 1111111111223
Q ss_pred cchhhhhcccCCcchhHHHH---hc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eee
Q 016864 131 GRGRQVISTARTCNCILIVL---DA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 131 ~~~~~~~~~~~~~d~il~vv---d~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
++..|....++..++.-.+. .. ..+....+.+.+.++.+++ ..++++..||+|+++|.+++ +.+
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLl 188 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLM 188 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 34344444444444433322 11 1123334567788888998 56888999999999999887 778
Q ss_pred cccCCCCCHHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~~ 212 (381)
|||++++|......+...
T Consensus 189 DEPts~LD~~~r~~l~~~ 206 (382)
T TIGR03415 189 DEPFSALDPLIRTQLQDE 206 (382)
T ss_pred ECCCccCCHHHHHHHHHH
Confidence 999999999877665543
No 326
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.34 E-value=7.2e-12 Score=121.80 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=98.8
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|++|||||||+++|+|...+ ..|.+.++|..+. +.|. .....++..
T Consensus 32 ~vsl~i~--~Ge~~~LlGpsGsGKSTLLr~IaGl~~p-----------~~G~I~~~g~~i~--~~~~----~~r~ig~vf 92 (375)
T PRK09452 32 NLDLTIN--NGEFLTLLGPSGCGKTTVLRLIAGFETP-----------DSGRIMLDGQDIT--HVPA----ENRHVNTVF 92 (375)
T ss_pred eeEEEEe--CCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECC--CCCH----HHCCEEEEe
Confidence 3445544 4489999999999999999999999888 8999999998663 2111 122344445
Q ss_pred hhhcccCCcchhHHHH---hcCC-C-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIVL---DAIK-P-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv---d~~~-~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|....++..++.-.+. .... + ....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||+
T Consensus 93 Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~ 172 (375)
T PRK09452 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESL 172 (375)
T ss_pred cCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 5555556666644432 1111 2 2224567778888888 57889999999999998887 7889999
Q ss_pred CCCCHHHHHHHHHH
Q 016864 199 TNLDLDTVKAICSE 212 (381)
Q Consensus 199 ~~l~~~~v~~~l~~ 212 (381)
+++|......+...
T Consensus 173 s~LD~~~r~~l~~~ 186 (375)
T PRK09452 173 SALDYKLRKQMQNE 186 (375)
T ss_pred CcCCHHHHHHHHHH
Confidence 99999766655443
No 327
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=5.3e-12 Score=118.52 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=82.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-...+.-........++..+.
T Consensus 25 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~ 93 (280)
T PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-----------TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQF 93 (280)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccCHHHHHhheEEEeeC
Confidence 33444444489999999999999999999998877 8899999987654211000000000111111111
Q ss_pred h--cccC--CcchhHHHHhc--CCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccce---------eeecccC
Q 016864 137 I--STAR--TCNCILIVLDA--IKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 137 ~--~~~~--~~d~il~vvd~--~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
. .... ..+.+.+.... .......+.+.+.++.+++. ..+++..||+|+++|..++ +.+|||+
T Consensus 94 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 173 (280)
T PRK13649 94 PESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPT 173 (280)
T ss_pred hhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 0 0011 11112111111 11122234566777888883 4778899999999997765 5556666
Q ss_pred CCCCHHHHHHHH
Q 016864 199 TNLDLDTVKAIC 210 (381)
Q Consensus 199 ~~l~~~~v~~~l 210 (381)
+++|......++
T Consensus 174 ~~LD~~~~~~l~ 185 (280)
T PRK13649 174 AGLDPKGRKELM 185 (280)
T ss_pred ccCCHHHHHHHH
Confidence 666665554443
No 328
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.33 E-value=1.6e-11 Score=111.05 Aligned_cols=83 Identities=18% Similarity=0.214 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|++||.+|||||||++.+++...+ ..|..|..+.....+.+++. .+.++||+|...... -....++.+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~-~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~-------l~~~~~~~~ 73 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP-GSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDN-------VRPLAYPDS 73 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHH-------HhHHhccCC
Confidence 48999999999999999999875433 34444444433345666664 567899999643221 111245899
Q ss_pred chhHHHHhcCCCh
Q 016864 144 NCILIVLDAIKPI 156 (381)
Q Consensus 144 d~il~vvd~~~~~ 156 (381)
|++++|+|.+++.
T Consensus 74 d~illvfdis~~~ 86 (222)
T cd04173 74 DAVLICFDISRPE 86 (222)
T ss_pred CEEEEEEECCCHH
Confidence 9999999998763
No 329
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.33 E-value=2.8e-12 Score=118.01 Aligned_cols=119 Identities=14% Similarity=0.191 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.++ .+.... .......+
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~p-----------~~G~i~~~g~~i~~~------~q~~~~-------~~~~tv~e 80 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLKP-----------DEGDIEIELDTVSYK------PQYIKA-------DYEGTVRD 80 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCCeEEECCceEEEe------cccccC-------CCCCCHHH
Confidence 489999999999999999999999877 788888887644433 111000 00000111
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHHHHHHH
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDTVKAI 209 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~v~~~ 209 (381)
.+......... ......+.++.+++ ..++++..||+|+++|..++ +.+|||++++|......+
T Consensus 81 ~l~~~~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l 154 (246)
T cd03237 81 LLSSITKDFYT--HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMA 154 (246)
T ss_pred HHHHHhhhccc--cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 11111110000 11234556677777 46788899999999997765 455666666665544433
No 330
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.33 E-value=3.4e-12 Score=116.09 Aligned_cols=123 Identities=22% Similarity=0.242 Sum_probs=69.4
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. .........++..
T Consensus 23 ~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~-~~~~~~~~i~~~~ 88 (228)
T cd03257 23 DVSFSIK--KGETLGLVGESGSGKSTLARAILGLLKP-----------TSGSIIFDGKDLLKLSRR-LRKIRRKEIQMVF 88 (228)
T ss_pred CceeEEc--CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEccccchh-hHHHhhccEEEEe
Confidence 3445544 4489999999999999999999998877 789999988765322100 0000001111111
Q ss_pred hhh--cccCCcch---hHHHHhcCCC--h-HHHHH-HHHHHHhccc---ccccCcCcccceeeccccce
Q 016864 135 QVI--STARTCNC---ILIVLDAIKP--I-THKRL-IEKELEGFGI---RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 135 ~~~--~~~~~~d~---il~vvd~~~~--~-~~~~~-i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~ 191 (381)
+.. ......++ +.+......+ . ..... ..+.++.+++ ..++++..||+|+++|..++
T Consensus 89 q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 89 QDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred cCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 111 01112222 2221111111 1 11122 2466777777 25778899999999996654
No 331
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.33 E-value=2.9e-12 Score=119.12 Aligned_cols=83 Identities=27% Similarity=0.367 Sum_probs=60.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc---ccccc-------------cc------ccceeeeecEEEEEcCEEeeecCccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT---FSEVA-------------SY------EFTTLTCIPGVITYRGAKIQLLDLPGII 123 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~---~~~~~-------------~~------~~tT~~~~~g~i~~~g~~i~l~DtpG~~ 123 (381)
+.|+|+|++|+|||||+++|+.. ....+ ++ .+.|+......+.|++..+.++||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 58999999999999999999643 22111 11 1334444455788899999999999986
Q ss_pred ccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 124 EGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
+.. ......++.+|++++|+|+..+
T Consensus 83 df~-------~~~~~~l~~aD~~IlVvda~~g 107 (267)
T cd04169 83 DFS-------EDTYRTLTAVDSAVMVIDAAKG 107 (267)
T ss_pred HHH-------HHHHHHHHHCCEEEEEEECCCC
Confidence 532 2344456889999999999765
No 332
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.33 E-value=6.5e-12 Score=113.12 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=73.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++. +.+.. ....+...+.
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~--~~~~~----~~~i~~v~q~ 78 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP-----------ASGSIKVNDQSHT--GLAPY----QRPVSMLFQE 78 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEcc--cCChh----ccceEEEecc
Confidence 34444445589999999999999999999999877 7899999887642 11100 1111222222
Q ss_pred hcccCCcchhHHH---Hhc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 137 ISTARTCNCILIV---LDA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
...+...++.-.+ ... ..+....+.+.+.++.+++ ..++.+..||+|+++|..++
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 140 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALA 140 (213)
T ss_pred CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHH
Confidence 2222222332222 111 1112234556778888888 46788899999999996655
No 333
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.33 E-value=6.4e-12 Score=114.07 Aligned_cols=127 Identities=20% Similarity=0.183 Sum_probs=77.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCc-ccccccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDL-PGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~Dt-pG~~~~~~~~~~~~~~ 135 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+..... .++..
T Consensus 40 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~~~~----------- 97 (224)
T cd03220 40 DVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-----------DSGTVTVRGRVSSLLGLGGGFNP----------- 97 (224)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEchhhcccccCCC-----------
Confidence 33444444489999999999999999999998777 88999998876532211 11100
Q ss_pred hhcccCCcchhHHHHhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCC
Q 016864 136 VISTARTCNCILIVLDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLD 202 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~ 202 (381)
.....+.+.+..... ......+.+...++.+++ ..++.+..||+|+++|..++ +.+|||++++|
T Consensus 98 ---~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD 174 (224)
T cd03220 98 ---ELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 (224)
T ss_pred ---CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 000011111111111 112223345666777777 56778899999999996665 55556666555
Q ss_pred HHHHHH
Q 016864 203 LDTVKA 208 (381)
Q Consensus 203 ~~~v~~ 208 (381)
......
T Consensus 175 ~~~~~~ 180 (224)
T cd03220 175 AAFQEK 180 (224)
T ss_pred HHHHHH
Confidence 554433
No 334
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=5.9e-12 Score=122.57 Aligned_cols=137 Identities=17% Similarity=0.135 Sum_probs=98.0
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+. +.|. .....++..|..
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~i~g~~i~--~~~~----~~r~ig~vfQ~~ 100 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-----------TAGQIMLDGVDLS--HVPP----YQRPINMMFQSY 100 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECC--CCCH----HHCCEEEEeCCC
Confidence 3444444489999999999999999999999888 8999999997653 2221 122344445555
Q ss_pred cccCCcchhHHHH---hcCC-C-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 138 STARTCNCILIVL---DAIK-P-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 138 ~~~~~~d~il~vv---d~~~-~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
..+++.++.-.+. .... + .+..+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++
T Consensus 101 ~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~L 180 (377)
T PRK11607 101 ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL 180 (377)
T ss_pred ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 5556666644432 1111 2 2234567788888888 56889999999999998887 7789999999
Q ss_pred CHHHHHHHHH
Q 016864 202 DLDTVKAICS 211 (381)
Q Consensus 202 ~~~~v~~~l~ 211 (381)
|......+..
T Consensus 181 D~~~r~~l~~ 190 (377)
T PRK11607 181 DKKLRDRMQL 190 (377)
T ss_pred CHHHHHHHHH
Confidence 9987665544
No 335
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.33 E-value=5.2e-12 Score=117.17 Aligned_cols=175 Identities=15% Similarity=0.103 Sum_probs=103.4
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-+..... ....++..
T Consensus 20 ~is~~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~~ 82 (258)
T PRK13548 20 DVSLTLR--PGEVVAILGPNGAGKSTLLRALSGELSP-----------DSGEVRLNGRPLADWSPAEL----ARRRAVLP 82 (258)
T ss_pred eeeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEEcccCCHHHh----hhheEEEc
Confidence 4445544 4489999999999999999999998777 78999998876432111000 00111111
Q ss_pred hhhcccCCcchhHHHHhc---C--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccceeeecccCCCCCHHHHH
Q 016864 135 QVISTARTCNCILIVLDA---I--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVK 207 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~---~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~ 207 (381)
+........++.-.+.-. . ......+.+...++.+++ ..++.+..||+|+++|..++..+
T Consensus 83 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al------------- 149 (258)
T PRK13548 83 QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVL------------- 149 (258)
T ss_pred cCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHH-------------
Confidence 211111222222221111 1 112234456778888888 56888999999999995543211
Q ss_pred HHHHHhcc------cCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----HHHh-cCCCeeeeccccc
Q 016864 208 AICSEYRI------HNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----EILD-KLPHYCPVSAHLE 276 (381)
Q Consensus 208 ~~l~~~~~------~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~l~-~~~~~v~vSa~~~ 276 (381)
. .++.++++|||| +.+|..+...+ ..+. ....+|++++|+-
T Consensus 150 -------~~~~~~~~~p~lllLDEPt---------------------~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 150 -------AQLWEPDGPPRWLLLDEPT---------------------SALDLAHQHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred -------hcccccCCCCCEEEEeCCc---------------------ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 2 245666777777 66776654433 2333 3456788888887
Q ss_pred ccHHHHHHHHH
Q 016864 277 WNLDGLLEKIW 287 (381)
Q Consensus 277 ~gl~~L~~~i~ 287 (381)
..+..++++++
T Consensus 202 ~~~~~~~d~i~ 212 (258)
T PRK13548 202 NLAARYADRIV 212 (258)
T ss_pred HHHHHhcCEEE
Confidence 66666555543
No 336
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.33 E-value=4.5e-12 Score=118.08 Aligned_cols=136 Identities=18% Similarity=0.172 Sum_probs=80.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+. ...++..
T Consensus 25 ~isl~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~----~~i~~v~ 87 (265)
T PRK10253 25 NLTVEIP--DGHFTAIIGPNGCGKSTLLRTLSRLMTP-----------AHGHVWLDGEHIQHYASKEVA----RRIGLLA 87 (265)
T ss_pred ecceEEC--CCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCcEEEECCEEhhhCCHHHHh----hheEEee
Confidence 4455554 4489999999999999999999998877 789999988765322211110 0111111
Q ss_pred hhhcccCCcchhHHHHh---cC------CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eee
Q 016864 135 QVISTARTCNCILIVLD---AI------KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd---~~------~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
+.........+.-.+.- .. .+....+.+.+.++.+++ ..++++..||+|+++|..++ +.+
T Consensus 88 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 167 (265)
T PRK10253 88 QNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLL 167 (265)
T ss_pred ccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 11111112222111110 00 112234466778888888 56889999999999996665 444
Q ss_pred cccCCCCCHHHHH
Q 016864 195 TVTNTNLDLDTVK 207 (381)
Q Consensus 195 ~~~~~~l~~~~v~ 207 (381)
|||+.++|.....
T Consensus 168 DEPt~gLD~~~~~ 180 (265)
T PRK10253 168 DEPTTWLDISHQI 180 (265)
T ss_pred eCccccCCHHHHH
Confidence 4555555544433
No 337
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=6.2e-12 Score=117.50 Aligned_cols=142 Identities=18% Similarity=0.200 Sum_probs=85.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++...+.+ ... .....++..+.
T Consensus 19 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~-~~~-~~~~i~~v~q~ 85 (271)
T PRK13638 19 GLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP-----------QKGAVLWQGKPLDYSKRG-LLA-LRQQVATVFQD 85 (271)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CccEEEECCEEcccccCC-HHH-HHhheEEEeeC
Confidence 33444444489999999999999999999998877 889999998876421110 000 00111111111
Q ss_pred hc-ccCCcch---hHHHHhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 137 IS-TARTCNC---ILIVLDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 137 ~~-~~~~~d~---il~vvd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
.. .+....+ +.+..... .+....+.+...++.+++ ..++++..||+|+++|..++ +.+|||++
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~ 165 (271)
T PRK13638 86 PEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTA 165 (271)
T ss_pred hhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 10 0011111 11111111 122223456677888887 46778899999999998776 66678888
Q ss_pred CCCHHHHHHHHH
Q 016864 200 NLDLDTVKAICS 211 (381)
Q Consensus 200 ~l~~~~v~~~l~ 211 (381)
++|......+++
T Consensus 166 ~LD~~~~~~l~~ 177 (271)
T PRK13638 166 GLDPAGRTQMIA 177 (271)
T ss_pred cCCHHHHHHHHH
Confidence 887766555443
No 338
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=4.7e-12 Score=117.20 Aligned_cols=136 Identities=24% Similarity=0.291 Sum_probs=79.4
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++.. +..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..... ..+.++..
T Consensus 23 ~is~~i~~--Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~~---~~~i~~~~ 86 (255)
T PRK11300 23 NVNLEVRE--QEIVSLIGPNGAGKTTVFNCLTGFYKP-----------TGGTILLRGQHIEGLPGHQIA---RMGVVRTF 86 (255)
T ss_pred eeeeEEcC--CeEEEEECCCCCCHHHHHHHHhCCcCC-----------CcceEEECCEECCCCCHHHHH---hcCeEEec
Confidence 44455544 489999999999999999999999877 889999998765422211100 01111111
Q ss_pred hhhcccCCcchhHHHH-------------hcC-----CC--hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce-
Q 016864 135 QVISTARTCNCILIVL-------------DAI-----KP--ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN- 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv-------------d~~-----~~--~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~- 191 (381)
+........++.-.+. +.. .. ....+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 87 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~ 166 (255)
T PRK11300 87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIAR 166 (255)
T ss_pred cCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHH
Confidence 1111122222221111 000 01 1223456677888888 56888999999999996665
Q ss_pred --------eeecccCCCCCHHHH
Q 016864 192 --------FTSTVTNTNLDLDTV 206 (381)
Q Consensus 192 --------i~~~~~~~~l~~~~v 206 (381)
+.+|||++++|....
T Consensus 167 al~~~p~llllDEPt~~LD~~~~ 189 (255)
T PRK11300 167 CMVTQPEILMLDEPAAGLNPKET 189 (255)
T ss_pred HHhcCCCEEEEcCCccCCCHHHH
Confidence 444455555554433
No 339
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.32 E-value=4.8e-12 Score=115.84 Aligned_cols=135 Identities=17% Similarity=0.197 Sum_probs=77.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-. ...+ ....+...
T Consensus 39 ~vs~~i~--~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~~~~~-~~~~----~~~i~~~~ 100 (236)
T cd03267 39 GISFTIE--KGEIVGFIGPNGAGKTTTLKILSGLLQP-----------TSGEVRVAGLVPWKR-RKKF----LRRIGVVF 100 (236)
T ss_pred ceeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcccc-chhh----cccEEEEc
Confidence 4455554 4489999999999999999999998877 789999988653210 0000 00111110
Q ss_pred -hhhcccCCcch---hHHHHhc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 135 -QVISTARTCNC---ILIVLDA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 135 -~~~~~~~~~d~---il~vvd~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
+........++ +.+.... ..+....+.+...++.+++ ..++++..||+|+++|..++ +.+|||
T Consensus 101 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 101 GQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 10001111122 2111111 1122233455667777787 46778899999999996654 444455
Q ss_pred CCCCCHHHHH
Q 016864 198 NTNLDLDTVK 207 (381)
Q Consensus 198 ~~~l~~~~v~ 207 (381)
++++|....+
T Consensus 181 t~~LD~~~~~ 190 (236)
T cd03267 181 TIGLDVVAQE 190 (236)
T ss_pred CCCCCHHHHH
Confidence 5555544433
No 340
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.32 E-value=3.3e-12 Score=112.75 Aligned_cols=141 Identities=22% Similarity=0.205 Sum_probs=94.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+++|++.. +..++|+|+||||||||+++|+|...+ ..|.|.|+|.++.-.- . .+-...|++...
T Consensus 21 gvsl~v~~--Geiv~llG~NGaGKTTlLkti~Gl~~~-----------~~G~I~~~G~dit~~p--~-~~r~r~Gi~~VP 84 (237)
T COG0410 21 GVSLEVER--GEIVALLGRNGAGKTTLLKTIMGLVRP-----------RSGRIIFDGEDITGLP--P-HERARLGIAYVP 84 (237)
T ss_pred eeeeEEcC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeeEEECCeecCCCC--H-HHHHhCCeEeCc
Confidence 55666655 379999999999999999999999888 7899999998775331 1 122234444445
Q ss_pred hhhcccCCcchhHHHHhc---CCC-hHHHHHHHHHHHhccc---ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVISTARTCNCILIVLDA---IKP-ITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~---~~~-~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
|-...++..++--.+.=+ ... ......+...++.|-. ..+++-..||+|++|...++ +.+|||+
T Consensus 85 egR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs 164 (237)
T COG0410 85 EGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 164 (237)
T ss_pred ccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 544455666664333211 111 1111114444555543 67778899999999998886 6678888
Q ss_pred CCCCHHHHHHHHH
Q 016864 199 TNLDLDTVKAICS 211 (381)
Q Consensus 199 ~~l~~~~v~~~l~ 211 (381)
.++.+..++++.+
T Consensus 165 ~GLaP~iv~~I~~ 177 (237)
T COG0410 165 EGLAPKIVEEIFE 177 (237)
T ss_pred cCcCHHHHHHHHH
Confidence 8888877766554
No 341
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.32 E-value=5.7e-12 Score=112.19 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=82.2
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.. + ......++..
T Consensus 18 ~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~-~----~~~~~i~~~~ 79 (198)
T TIGR01189 18 GLSFTLN--AGEALQVTGPNGIGKTTLLRILAGLLRP-----------DSGEVRWNGTALAEQR-D----EPHRNILYLG 79 (198)
T ss_pred eeeEEEc--CCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEEcccch-H----HhhhheEEec
Confidence 3444444 4489999999999999999999998877 7899999887653221 0 0001111112
Q ss_pred hhhcccCCcchh---HHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 135 QVISTARTCNCI---LIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 135 ~~~~~~~~~d~i---l~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
+........++. .+....... +...+.+.++.+++ ..++++..||+|+++|..++ +.+|||+++
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGG--AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCC--cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 211111222222 111111111 12346677888888 46788999999999997765 556677766
Q ss_pred CCHHHHHHH
Q 016864 201 LDLDTVKAI 209 (381)
Q Consensus 201 l~~~~v~~~ 209 (381)
+|......+
T Consensus 158 LD~~~~~~l 166 (198)
T TIGR01189 158 LDKAGVALL 166 (198)
T ss_pred CCHHHHHHH
Confidence 666544433
No 342
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.6e-11 Score=116.73 Aligned_cols=153 Identities=21% Similarity=0.294 Sum_probs=106.0
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++-.+-..+|+||||||+|||||+..|+|...| ..|.+.-+ ..+.+ |.+++.. ++.+
T Consensus 606 ldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P-----------~~GE~RKn-hrL~i----G~FdQh~------~E~L 663 (807)
T KOG0066|consen 606 LDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP-----------NDGELRKN-HRLRI----GWFDQHA------NEAL 663 (807)
T ss_pred ccccccccceeEEECCCCccHHHHHHHHhcCCCC-----------Ccchhhcc-ceeee----echhhhh------HHhh
Confidence 3333333469999999999999999999999877 88877653 23322 3333211 1111
Q ss_pred cccCCcchhHHHHhcCCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhc
Q 016864 138 STARTCNCILIVLDAIKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYR 214 (381)
Q Consensus 138 ~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~ 214 (381)
-..-+.+-++...++. ..+..+..|..||+. ..-++..||+|++.| ..|.++-
T Consensus 664 --~~Eetp~EyLqr~FNl--pyq~ARK~LG~fGL~sHAHTikikdLSGGQKaR--------------------ValaeLa 719 (807)
T KOG0066|consen 664 --NGEETPVEYLQRKFNL--PYQEARKQLGTFGLASHAHTIKIKDLSGGQKAR--------------------VALAELA 719 (807)
T ss_pred --ccccCHHHHHHHhcCC--ChHHHHHHhhhhhhhhccceEeeeecCCcchHH--------------------HHHHHHh
Confidence 1223344444444432 234566788899982 334678999999988 5677777
Q ss_pred ccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH-HHHhcCCCeeeecccccc
Q 016864 215 IHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL-EILDKLPHYCPVSAHLEW 277 (381)
Q Consensus 215 ~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l-~~l~~~~~~v~vSa~~~~ 277 (381)
+...++++++||| |.+|+.+.+.+ +++.+|.+-|++.+|+..
T Consensus 720 l~~PDvlILDEPT---------------------NNLDIESIDALaEAIney~GgVi~VsHDeR 762 (807)
T KOG0066|consen 720 LGGPDVLILDEPT---------------------NNLDIESIDALAEAINEYNGGVIMVSHDER 762 (807)
T ss_pred cCCCCEEEecCCC---------------------CCcchhhHHHHHHHHHhccCcEEEEecccc
Confidence 8889999999999 99999988876 677888888888888863
No 343
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=5.3e-12 Score=117.56 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=80.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..-+ ....+...
T Consensus 29 ~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~ 91 (265)
T PRK10575 29 PLSLTFP--AGKVTGLIGHNGSGKSTLLKMLGRHQPP-----------SEGEILLDAQPLESWSSKAF----ARKVAYLP 91 (265)
T ss_pred eeeeEEc--CCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCEehhhCCHHHH----hhheEEec
Confidence 3444444 4489999999999999999999998777 78999998876532111000 00111111
Q ss_pred hhhcccCCcchhHHHHhc---------CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eee
Q 016864 135 QVISTARTCNCILIVLDA---------IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~---------~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
+........++.-.+.-. .......+.+...++.+++ ..++++..||+|+++|..++ +.+
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllL 171 (265)
T PRK10575 92 QQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLL 171 (265)
T ss_pred cCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111111222222111110 0012234456778888888 56788999999999996665 444
Q ss_pred cccCCCCCHHHHH
Q 016864 195 TVTNTNLDLDTVK 207 (381)
Q Consensus 195 ~~~~~~l~~~~v~ 207 (381)
|||++++|.....
T Consensus 172 DEPt~~LD~~~~~ 184 (265)
T PRK10575 172 DEPTSALDIAHQV 184 (265)
T ss_pred cCCcccCCHHHHH
Confidence 5555555554443
No 344
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.32 E-value=5e-12 Score=113.84 Aligned_cols=82 Identities=18% Similarity=0.328 Sum_probs=56.8
Q ss_pred EEEEEcCCCCchHHHHHHHhccccccc-------------------ccccceeeeecEEEEEc-----CEEeeecCcccc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVA-------------------SYEFTTLTCIPGVITYR-----GAKIQLLDLPGI 122 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~-------------------~~~~tT~~~~~g~i~~~-----g~~i~l~DtpG~ 122 (381)
+|+++|+.|+|||||+++|++....+. ...++|.+.....+.+. ...+.++||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999986432221 11244444444444443 367899999998
Q ss_pred cccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 123 IEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.+.. ......+..+|++++|+|+...
T Consensus 82 ~~f~-------~~~~~~~~~aD~~llVvD~~~~ 107 (213)
T cd04167 82 VNFM-------DEVAAALRLSDGVVLVVDVVEG 107 (213)
T ss_pred cchH-------HHHHHHHHhCCEEEEEEECCCC
Confidence 6532 3344456889999999998765
No 345
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=5.7e-12 Score=115.77 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=72.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-.+..-+ ....++..+.
T Consensus 19 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~ 83 (242)
T cd03295 19 NLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-----------TSGEIFIDGEDIREQDPVEL----RRKIGYVIQQ 83 (242)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCeEcCcCChHHh----hcceEEEccC
Confidence 33444444489999999999999999999998777 78999998876532211000 0111122222
Q ss_pred hcccCCcchhHHHH---hc--CCChHHHHHHHHHHHhcccc----cccCcCcccceeeccccce
Q 016864 137 ISTARTCNCILIVL---DA--IKPITHKRLIEKELEGFGIR----LNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 137 ~~~~~~~d~il~vv---d~--~~~~~~~~~i~~~l~~~~~~----~~~~~~~ls~~~~~r~~~~ 191 (381)
.......++.-.+. .. .......+.+.+.++.+++. .++++..||+|+++|..++
T Consensus 84 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 84 IGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVA 147 (242)
T ss_pred ccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHH
Confidence 11222223322211 11 11122345667788888884 4677899999999996655
No 346
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.32 E-value=1.1e-11 Score=115.41 Aligned_cols=137 Identities=22% Similarity=0.221 Sum_probs=79.4
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..-.. ......++..+.
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~i~~v~q~ 96 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-----------AQGTVSFRGQDLYQLDRKQRR-AFRRDVQLVFQD 96 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEccccCHHHHH-HHhhceEEEecC
Confidence 33444444589999999999999999999998877 889999998765422110000 000111111111
Q ss_pred h--cccCCcchhH---HHHh-c--CCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccce---------eeecc
Q 016864 137 I--STARTCNCIL---IVLD-A--IKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 137 ~--~~~~~~d~il---~vvd-~--~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
. ......++.- +..+ . ..+....+.+.+.++.+++. .++++..||+|+++|..++ +.+||
T Consensus 97 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDE 176 (265)
T TIGR02769 97 SPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE 176 (265)
T ss_pred hhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 0 0111122211 1111 1 11223345677888888883 4778999999999996665 44455
Q ss_pred cCCCCCHHH
Q 016864 197 TNTNLDLDT 205 (381)
Q Consensus 197 ~~~~l~~~~ 205 (381)
|++++|...
T Consensus 177 Pt~~LD~~~ 185 (265)
T TIGR02769 177 AVSNLDMVL 185 (265)
T ss_pred CcccCCHHH
Confidence 555555443
No 347
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.31 E-value=7.5e-12 Score=128.12 Aligned_cols=83 Identities=22% Similarity=0.219 Sum_probs=52.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccc-cceeeeec------------EEE------EEcCEEeeecCccccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYE-FTTLTCIP------------GVI------TYRGAKIQLLDLPGIIEG 125 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~-~tT~~~~~------------g~i------~~~g~~i~l~DtpG~~~~ 125 (381)
.+.|+++|++|+|||||+++|+|.... +..+ +.|.+... |.. .+.-..+.++||||....
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~-~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVA-AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccc-cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 379999999999999999999886432 2222 22222110 100 000012689999998654
Q ss_pred ccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 126 AKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
. ......+..+|++++|+|+.++
T Consensus 85 ~-------~~~~~~~~~aD~~IlVvDa~~g 107 (586)
T PRK04004 85 T-------NLRKRGGALADIAILVVDINEG 107 (586)
T ss_pred H-------HHHHHhHhhCCEEEEEEECCCC
Confidence 2 1122244779999999999874
No 348
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=6.6e-12 Score=116.24 Aligned_cols=120 Identities=14% Similarity=0.131 Sum_probs=70.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+. ...+...
T Consensus 20 ~is~~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~~----~~i~~~~ 82 (255)
T PRK11231 20 DLSLSLP--TGKITALIGPNGCGKSTLLKCFARLLTP-----------QSGTVFLGDKPISMLSSRQLA----RRLALLP 82 (255)
T ss_pred eeeeEEc--CCcEEEEECCCCCCHHHHHHHHhCCcCC-----------CCcEEEECCEEhHHCCHHHHh----hheEEec
Confidence 3444444 4489999999999999999999998777 789999988764322111100 0011111
Q ss_pred hhhcccCCcchhHHHH-------hcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 135 QVISTARTCNCILIVL-------DAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv-------d~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
+........++.-.+. +.. ......+.+...++.+++ ..++++..||+|+++|..++
T Consensus 83 q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la 150 (255)
T PRK11231 83 QHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLA 150 (255)
T ss_pred ccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHH
Confidence 1111111112211110 000 112234456777888888 46888999999999996665
No 349
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=6.8e-12 Score=118.23 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=88.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCc-ccccccccCCCcch
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDL-PGIIEGAKDGKGRG 133 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~Dt-pG~~~~~~~~~~~~ 133 (381)
+.++++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+. ..... .....+..
T Consensus 24 ~vsl~i~--~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~-~~~~ig~v 89 (288)
T PRK13643 24 DIDLEVK--KGSYTALIGHTGSGKSTLLQHLNGLLQP-----------TEGKVTVGDIVVSSTSKQKEIKP-VRKKVGVV 89 (288)
T ss_pred eeEEEEc--CCCEEEEECCCCChHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccccHHH-HHhhEEEE
Confidence 4444444 4489999999999999999999999877 88999999987642110 00000 01111111
Q ss_pred hhhh-cccCCcchhHHHH----hcCCC-hHHHHHHHHHHHhccc---ccccCcCcccceeeccccce---------eeec
Q 016864 134 RQVI-STARTCNCILIVL----DAIKP-ITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 134 ~~~~-~~~~~~d~il~vv----d~~~~-~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
.|.. ..+-..++.-.+. ....+ ......+.+.++.+++ ...+.+..||+|+++|..++ +.+|
T Consensus 90 ~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLD 169 (288)
T PRK13643 90 FQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLD 169 (288)
T ss_pred ecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1110 0011112221111 11111 2234456777888888 24788999999999998886 7778
Q ss_pred ccCCCCCHHHHHHHHH
Q 016864 196 VTNTNLDLDTVKAICS 211 (381)
Q Consensus 196 ~~~~~l~~~~v~~~l~ 211 (381)
||++++|......+++
T Consensus 170 EPt~gLD~~~~~~l~~ 185 (288)
T PRK13643 170 EPTAGLDPKARIEMMQ 185 (288)
T ss_pred CCccCCCHHHHHHHHH
Confidence 8888888876665544
No 350
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.31 E-value=9e-12 Score=114.80 Aligned_cols=143 Identities=17% Similarity=0.125 Sum_probs=80.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+.... +..|.+.++|.++.-. +.-........++..
T Consensus 19 ~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~------~~~G~i~~~g~~~~~~--~~~~~~~~~~i~~v~ 88 (247)
T TIGR00972 19 NINLDIP--KNQVTALIGPSGCGKSTLLRSLNRMNDLVPGV------RIEGKVLFDGQDIYDK--KIDVVELRRRVGMVF 88 (247)
T ss_pred ceeEEEC--CCCEEEEECCCCCCHHHHHHHHhccCCCCcCC------CCceEEEECCEEcccc--ccchHHHHhheEEEe
Confidence 3444444 44899999999999999999999987760000 0279999988765321 000000011112212
Q ss_pred hhhcccCCcch---hHHHHhcC---CChHHHHHHHHHHHhcccc------cccCcCcccceeeccccce---------ee
Q 016864 135 QVISTARTCNC---ILIVLDAI---KPITHKRLIEKELEGFGIR------LNKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 135 ~~~~~~~~~d~---il~vvd~~---~~~~~~~~i~~~l~~~~~~------~~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
+...... ..+ +.+..... ......+.+...++.+++. .++++..||+|+++|..++ +.
T Consensus 89 q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 167 (247)
T TIGR00972 89 QKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLL 167 (247)
T ss_pred cCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2111111 222 22111111 1122334567778888773 4677899999999997665 44
Q ss_pred ecccCCCCCHHHHHH
Q 016864 194 STVTNTNLDLDTVKA 208 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~ 208 (381)
+|||++++|......
T Consensus 168 lDEPt~~LD~~~~~~ 182 (247)
T TIGR00972 168 LDEPTSALDPIATGK 182 (247)
T ss_pred EeCCcccCCHHHHHH
Confidence 555555555544433
No 351
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=5.2e-12 Score=115.62 Aligned_cols=137 Identities=15% Similarity=0.111 Sum_probs=75.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-.+.... .....++..+.
T Consensus 23 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~q~ 88 (237)
T PRK11614 23 EVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA-----------TSGRIVFDGKDITDWQTAKI---MREAVAIVPEG 88 (237)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCceEEECCEecCCCCHHHH---HHhCEEEeccC
Confidence 33444444589999999999999999999999877 78999998876532211000 00111111121
Q ss_pred hcccCCcchhHHHHhc---CCChHHHHHHHHHHHhc-cc--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 137 ISTARTCNCILIVLDA---IKPITHKRLIEKELEGF-GI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~---~~~~~~~~~i~~~l~~~-~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
...+...++.-.+..+ .......+.+...++.+ ++ ....++..||+|+++|..++ +.+|||++++
T Consensus 89 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~L 168 (237)
T PRK11614 89 RRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168 (237)
T ss_pred cccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccC
Confidence 1122222232222111 11111122344445555 24 45678899999999996665 4445555555
Q ss_pred CHHHHH
Q 016864 202 DLDTVK 207 (381)
Q Consensus 202 ~~~~v~ 207 (381)
|.....
T Consensus 169 D~~~~~ 174 (237)
T PRK11614 169 APIIIQ 174 (237)
T ss_pred CHHHHH
Confidence 554433
No 352
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.31 E-value=1.4e-11 Score=102.34 Aligned_cols=145 Identities=21% Similarity=0.268 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecE----EEEEcCEEeeecCcccccccccCCCcchhhhh-ccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPG----VITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI-STA 140 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g----~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~-~~~ 140 (381)
.+|-++|..||||||+++.+.|.... |++|+.| .+.+++..+.++|.-|..... .++ +..
T Consensus 17 ~riLiLGLdNsGKTti~~kl~~~~~~-------~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr--------~~W~nYf 81 (185)
T KOG0073|consen 17 VRILILGLDNSGKTTIVKKLLGEDTD-------TISPTLGFQIKTLEYKGYTLNIWDVGGQKTLR--------SYWKNYF 81 (185)
T ss_pred eEEEEEecCCCCchhHHHHhcCCCcc-------ccCCccceeeEEEEecceEEEEEEcCCcchhH--------HHHHHhh
Confidence 79999999999999999999998743 3333333 567789999999999965532 222 245
Q ss_pred CCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcc
Q 016864 141 RTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADI 220 (381)
Q Consensus 141 ~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 220 (381)
...|++++|+|.+++..-.+. .. ++..+|.+-
T Consensus 82 estdglIwvvDssD~~r~~e~-~~----------------------------------------~L~~lL~ee------- 113 (185)
T KOG0073|consen 82 ESTDGLIWVVDSSDRMRMQEC-KQ----------------------------------------ELTELLVEE------- 113 (185)
T ss_pred hccCeEEEEEECchHHHHHHH-HH----------------------------------------HHHHHHhhh-------
Confidence 789999999999876432111 11 111222110
Q ss_pred ccccCCChhHHHHHHhcccccccEEEEEecCCcC---CHHHH------HHHh--cCCCeeeecccccccHHHHHHHHHHH
Q 016864 221 TLRYDATADDLIDVIEGSRIYMPCIYVINKIDQI---TLEEL------EILD--KLPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 221 ~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~---~~~~l------~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
.....|+++++||.|+. +.+++ +.+. ..-+++.+|+.+|+++.+-.+++.+.
T Consensus 114 -----------------rlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~ 176 (185)
T KOG0073|consen 114 -----------------RLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDD 176 (185)
T ss_pred -----------------hhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHH
Confidence 11136999999999998 23333 2331 12467889999998777766666554
Q ss_pred c
Q 016864 290 L 290 (381)
Q Consensus 290 l 290 (381)
+
T Consensus 177 l 177 (185)
T KOG0073|consen 177 L 177 (185)
T ss_pred H
Confidence 3
No 353
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.31 E-value=6.9e-12 Score=114.06 Aligned_cols=139 Identities=18% Similarity=0.144 Sum_probs=79.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhccc-----ccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCc
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTF-----SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG 131 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~-----~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~ 131 (381)
++++....+..++|+|+||||||||+++|+|.. .+ ..|.+.++|..+.-.+. ... ......+
T Consensus 18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-----------~~G~i~~~g~~~~~~~~-~~~-~~~~~i~ 84 (227)
T cd03260 18 DISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-----------DEGEVLLDGKDIYDLDV-DVL-ELRRRVG 84 (227)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC-----------CCeEEEECCEEhhhcch-HHH-HHHhhEE
Confidence 344444445899999999999999999999987 55 78999999876532221 000 0001111
Q ss_pred chhhhhcccCCcchhHHH---HhcC--CC-hHHHHHHHHHHHhccc--ccccC--cCcccceeeccccce---------e
Q 016864 132 RGRQVISTARTCNCILIV---LDAI--KP-ITHKRLIEKELEGFGI--RLNKQ--PPNLTFRKKDKGGIN---------F 192 (381)
Q Consensus 132 ~~~~~~~~~~~~d~il~v---vd~~--~~-~~~~~~i~~~l~~~~~--~~~~~--~~~ls~~~~~r~~~~---------i 192 (381)
+..+....+ ..++.-.+ .... .. ....+.+.+.++.+++ ...+. +..||+|+++|..++ +
T Consensus 85 ~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 163 (227)
T cd03260 85 MVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVL 163 (227)
T ss_pred EEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 111111111 12221111 1111 11 1134566778888888 33455 589999999997765 4
Q ss_pred eecccCCCCCHHHHHHH
Q 016864 193 TSTVTNTNLDLDTVKAI 209 (381)
Q Consensus 193 ~~~~~~~~l~~~~v~~~ 209 (381)
.+|||++++|......+
T Consensus 164 llDEPt~~LD~~~~~~l 180 (227)
T cd03260 164 LLDEPTSALDPISTAKI 180 (227)
T ss_pred EEeCCCccCCHHHHHHH
Confidence 55566666665544433
No 354
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.31 E-value=4.5e-12 Score=128.96 Aligned_cols=142 Identities=20% Similarity=0.153 Sum_probs=91.4
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.+.. .......++..|.
T Consensus 23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~---~~~~~~i~~v~q~ 88 (510)
T PRK09700 23 SVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-----------TKGTITINNINYNKLDHK---LAAQLGIGIIYQE 88 (510)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC-----------CccEEEECCEECCCCCHH---HHHHCCeEEEeec
Confidence 44444445589999999999999999999999877 789999988765322100 0001112222222
Q ss_pred hcccCCcchhHHHHhcC-------C-----ChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------ee
Q 016864 137 ISTARTCNCILIVLDAI-------K-----PITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~-------~-----~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
.......++.-.+.-.. . .....+.+.+.+..+++ ..++++..||+|+++|..++ +.
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 168 (510)
T PRK09700 89 LSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVII 168 (510)
T ss_pred ccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11222223322221100 0 11234567778888888 56788999999999998886 78
Q ss_pred ecccCCCCCHHHHHHHHHH
Q 016864 194 STVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~~l~~ 212 (381)
+|||++++|......+++.
T Consensus 169 LDEPt~~LD~~~~~~l~~~ 187 (510)
T PRK09700 169 MDEPTSSLTNKEVDYLFLI 187 (510)
T ss_pred EeCCCCCCCHHHHHHHHHH
Confidence 8999999999877666543
No 355
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=5.7e-12 Score=119.53 Aligned_cols=144 Identities=17% Similarity=0.175 Sum_probs=88.4
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeee-------------cCccc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQL-------------LDLPG 121 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l-------------~DtpG 121 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.. +|..+
T Consensus 25 ~vsl~i~--~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 91 (305)
T PRK13651 25 NVSVEIN--QGEFIAIIGQTGSGKTTFIEHLNALLLP-----------DTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQK 91 (305)
T ss_pred eeEEEEe--CCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEEeceeccccccccccccccccccccc
Confidence 3444544 4489999999999999999999999877 78888887654311 11100
Q ss_pred c-------cccccCCCcchhhhh-cccCCcchhHHHH----hc-CCChHHHHHHHHHHHhccc---ccccCcCcccceee
Q 016864 122 I-------IEGAKDGKGRGRQVI-STARTCNCILIVL----DA-IKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKK 185 (381)
Q Consensus 122 ~-------~~~~~~~~~~~~~~~-~~~~~~d~il~vv----d~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~ 185 (381)
. ........++..|.. ..+...++.-.+. .. ..+....+.+.+.++.+++ ..++++..||+|++
T Consensus 92 ~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqk 171 (305)
T PRK13651 92 TRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQK 171 (305)
T ss_pred ccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHH
Confidence 0 000111222222211 0111122221111 11 1112334567788888888 36788999999999
Q ss_pred ccccce---------eeecccCCCCCHHHHHHHHH
Q 016864 186 DKGGIN---------FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 186 ~r~~~~---------i~~~~~~~~l~~~~v~~~l~ 211 (381)
+|..++ +.+|||++++|......+++
T Consensus 172 qrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~ 206 (305)
T PRK13651 172 RRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILE 206 (305)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 998886 77788888888876665544
No 356
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.31 E-value=8e-12 Score=127.03 Aligned_cols=177 Identities=14% Similarity=0.127 Sum_probs=106.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-... . .....+.++..+.
T Consensus 281 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~-~--~~~~~~i~~v~q~ 346 (510)
T PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA-----------RGGRIMLNGKEINALST-A--QRLARGLVYLPED 346 (510)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCcEEEECCEECCCCCH-H--HHHhCCcEECCCC
Confidence 34444444589999999999999999999998877 78999998876532111 0 0001111221211
Q ss_pred h---cccCCcchhHHHHh-------c-CCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccceeeecccCCCCC
Q 016864 137 I---STARTCNCILIVLD-------A-IKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGINFTSTVTNTNLD 202 (381)
Q Consensus 137 ~---~~~~~~d~il~vvd-------~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~ 202 (381)
. .......+...+.. . .......+.+.+.|+.+++. .++++..||+|+++|..++
T Consensus 347 ~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la----------- 415 (510)
T PRK15439 347 RQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIA----------- 415 (510)
T ss_pred hhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHH-----------
Confidence 0 11122222222110 0 01122334567888888883 5788999999999995543
Q ss_pred HHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH----HHhcCCCeeeeccccccc
Q 016864 203 LDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE----ILDKLPHYCPVSAHLEWN 278 (381)
Q Consensus 203 ~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~----~l~~~~~~v~vSa~~~~g 278 (381)
.....+++++++|||| |.+|......+. .+.....++++++|+-..
T Consensus 416 ---------~al~~~p~lLlLDEPt---------------------~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~ 465 (510)
T PRK15439 416 ---------KCLEASPQLLIVDEPT---------------------RGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEE 465 (510)
T ss_pred ---------HHHhhCCCEEEECCCC---------------------cCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 2224456677777777 667766555432 233345678888999877
Q ss_pred HHHHHHHHHH
Q 016864 279 LDGLLEKIWE 288 (381)
Q Consensus 279 l~~L~~~i~~ 288 (381)
+.+++++++-
T Consensus 466 i~~~~d~i~~ 475 (510)
T PRK15439 466 IEQMADRVLV 475 (510)
T ss_pred HHHhCCEEEE
Confidence 7776666543
No 357
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.31 E-value=6.6e-12 Score=127.71 Aligned_cols=176 Identities=15% Similarity=0.162 Sum_probs=100.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.. + ........++..|.
T Consensus 281 ~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----------~~G~I~~~g~~~~~~~-~--~~~~~~~i~~v~q~ 346 (510)
T PRK09700 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR-----------AGGEIRLNGKDISPRS-P--LDAVKKGMAYITES 346 (510)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-----------CCCeEEECCEECCCCC-H--HHHHHCCcEEccCc
Confidence 34444444589999999999999999999998877 7899999887652110 0 00001112222221
Q ss_pred ---hcccCCcchhHHHHhc--------------CCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccceeeecc
Q 016864 137 ---ISTARTCNCILIVLDA--------------IKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGINFTSTV 196 (381)
Q Consensus 137 ---~~~~~~~d~il~vvd~--------------~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~i~~~~ 196 (381)
.......++.-.+.-. .......+.+.+.++.+++. .++++..||+|+++|..++
T Consensus 347 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lA----- 421 (510)
T PRK09700 347 RRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLIS----- 421 (510)
T ss_pred cccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHH-----
Confidence 1111222222211100 01122234567788888883 5788999999999996654
Q ss_pred cCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----HHHhcCCCeeeec
Q 016864 197 TNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----EILDKLPHYCPVS 272 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~l~~~~~~v~vS 272 (381)
.....++.++++|||| +.+|....+.+ ..+.....+++++
T Consensus 422 ---------------ral~~~p~lLlLDEPt---------------------~~LD~~~~~~l~~~l~~l~~~g~tvi~v 465 (510)
T PRK09700 422 ---------------KWLCCCPEVIIFDEPT---------------------RGIDVGAKAEIYKVMRQLADDGKVILMV 465 (510)
T ss_pred ---------------HHHhcCCCEEEECCCC---------------------CCcCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 2223344555555555 55555443332 2222334567788
Q ss_pred ccccccHHHHHHHHH
Q 016864 273 AHLEWNLDGLLEKIW 287 (381)
Q Consensus 273 a~~~~gl~~L~~~i~ 287 (381)
+|+-..+..++++++
T Consensus 466 sHd~~~~~~~~d~i~ 480 (510)
T PRK09700 466 SSELPEIITVCDRIA 480 (510)
T ss_pred cCCHHHHHhhCCEEE
Confidence 888766666665543
No 358
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.31 E-value=6.3e-12 Score=127.57 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=91.4
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++...+... ......++..|.
T Consensus 22 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~~---~~~~~i~~v~q~ 87 (501)
T PRK11288 22 DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-----------DAGSILIDGQEMRFASTTA---ALAAGVAIIYQE 87 (501)
T ss_pred eeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCCHHH---HHhCCEEEEEec
Confidence 33444444489999999999999999999998877 7899999887664221000 001112222222
Q ss_pred hcccCCcchhHHHHhc--------CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 137 ISTARTCNCILIVLDA--------IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~--------~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
.......++.-.+.-. .......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 167 (501)
T PRK11288 88 LHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEP 167 (501)
T ss_pred hhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 2222222332222111 0112234567788888888 46788999999999998886 788999
Q ss_pred CCCCCHHHHHHHHHH
Q 016864 198 NTNLDLDTVKAICSE 212 (381)
Q Consensus 198 ~~~l~~~~v~~~l~~ 212 (381)
++++|......+++.
T Consensus 168 t~~LD~~~~~~l~~~ 182 (501)
T PRK11288 168 TSSLSAREIEQLFRV 182 (501)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999877666543
No 359
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=4.4e-12 Score=114.50 Aligned_cols=161 Identities=21% Similarity=0.287 Sum_probs=111.9
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhc-ccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTG-TFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g-~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.+..|-|+|.+|||||||+|+|-+ ...+++..+-+|..+..-..++++..+.++||||+-++............+.++.
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~ 117 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPK 117 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHhhh
Confidence 436777999999999999999974 4456666666666666666778889999999999987654443333445566788
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
.|++++++++.++.- ..|+..+..++..
T Consensus 118 ~DLvL~l~~~~draL------------------------------------------~~d~~f~~dVi~~---------- 145 (296)
T COG3596 118 LDLVLWLIKADDRAL------------------------------------------GTDEDFLRDVIIL---------- 145 (296)
T ss_pred ccEEEEeccCCCccc------------------------------------------cCCHHHHHHHHHh----------
Confidence 999999999887631 1222222222221
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCHH--H--------------H----HHH----hcCCCeeeeccccccc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE--E--------------L----EIL----DKLPHYCPVSAHLEWN 278 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~--~--------------l----~~l----~~~~~~v~vSa~~~~g 278 (381)
...+|+++++|-+|...+. | + +.+ ..-.|++.+|....+|
T Consensus 146 ----------------~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wg 209 (296)
T COG3596 146 ----------------GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWG 209 (296)
T ss_pred ----------------ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCcc
Confidence 1126899999988876331 0 1 111 2235788888899999
Q ss_pred HHHHHHHHHHHcCC
Q 016864 279 LDGLLEKIWEYLNL 292 (381)
Q Consensus 279 l~~L~~~i~~~l~~ 292 (381)
++.|...+...++.
T Consensus 210 l~~l~~ali~~lp~ 223 (296)
T COG3596 210 LKELVRALITALPV 223 (296)
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999998874
No 360
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.30 E-value=8.3e-12 Score=111.92 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=78.8
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|..+.. +.+. ...+...+..
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~---~~~~----~~~~~~~~~~ 82 (207)
T PRK13539 21 LSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-----------AAGTIKLDGGDIDD---PDVA----EACHYLGHRN 82 (207)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEeCcc---hhhH----hhcEEecCCC
Confidence 3444444589999999999999999999998777 78999998876431 1111 1111111111
Q ss_pred cccCCcch---hHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCH
Q 016864 138 STARTCNC---ILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDL 203 (381)
Q Consensus 138 ~~~~~~d~---il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~ 203 (381)
.......+ +.+...... . ..+.+.+.++.+++ ...+++..||+|+++|..++ +.+|||++++|.
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~-~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 160 (207)
T PRK13539 83 AMKPALTVAENLEFWAAFLG-G-EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160 (207)
T ss_pred cCCCCCcHHHHHHHHHHhcC-C-cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 11112222 211111111 1 12346777888888 45778899999999997665 455566666665
Q ss_pred HHHHHH
Q 016864 204 DTVKAI 209 (381)
Q Consensus 204 ~~v~~~ 209 (381)
.....+
T Consensus 161 ~~~~~l 166 (207)
T PRK13539 161 AAVALF 166 (207)
T ss_pred HHHHHH
Confidence 544443
No 361
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.30 E-value=7.7e-12 Score=126.65 Aligned_cols=141 Identities=18% Similarity=0.176 Sum_probs=89.6
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++...... .......+...
T Consensus 16 ~vs~~i~--~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~v~ 79 (491)
T PRK10982 16 NVNLKVR--PHSIHALMGENGAGKSTLLKCLFGIYQK-----------DSGSILFQGKEIDFKSSK---EALENGISMVH 79 (491)
T ss_pred eeeEEEc--CCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CceEEEECCEECCCCCHH---HHHhCCEEEEe
Confidence 3444444 4489999999999999999999998877 789999998765422100 00001111111
Q ss_pred hhhcccCCcchhHHHHhc----C----CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeec
Q 016864 135 QVISTARTCNCILIVLDA----I----KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~----~----~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
|........++.-.+.-. . ......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 211111222222211100 0 112223456778888888 56788999999999998887 7889
Q ss_pred ccCCCCCHHHHHHHHH
Q 016864 196 VTNTNLDLDTVKAICS 211 (381)
Q Consensus 196 ~~~~~l~~~~v~~~l~ 211 (381)
||++++|......+++
T Consensus 160 EPt~~LD~~~~~~l~~ 175 (491)
T PRK10982 160 EPTSSLTEKEVNHLFT 175 (491)
T ss_pred CCCCCCCHHHHHHHHH
Confidence 9999999987766644
No 362
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4.1e-12 Score=123.16 Aligned_cols=86 Identities=19% Similarity=0.152 Sum_probs=73.4
Q ss_pred HHHhccc---ccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhccccc
Q 016864 165 ELEGFGI---RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIY 241 (381)
Q Consensus 165 ~l~~~~~---~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~ 241 (381)
.|..+|| ...++...+|+|.+.| ..|.+..+..++++++||||
T Consensus 181 ~L~glGFt~emq~~pt~slSGGWrMr--------------------laLARAlf~~pDlLLLDEPT-------------- 226 (582)
T KOG0062|consen 181 ILAGLGFTPEMQLQPTKSLSGGWRMR--------------------LALARALFAKPDLLLLDEPT-------------- 226 (582)
T ss_pred HHHhCCCCHHHHhccccccCcchhhH--------------------HHHHHHHhcCCCEEeecCCc--------------
Confidence 7778888 6777889999999988 44556667889999999999
Q ss_pred ccEEEEEecCCcCCHHHHHH-HhcCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 242 MPCIYVINKIDQITLEELEI-LDKLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~l~~-l~~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
|++|..+..|++. +..++.++++.||+..+++.++..|+++-+
T Consensus 227 -------NhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~ 270 (582)
T KOG0062|consen 227 -------NHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLEN 270 (582)
T ss_pred -------ccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhh
Confidence 9999999999975 467888999999999999999999987543
No 363
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.30 E-value=8.7e-12 Score=115.51 Aligned_cols=136 Identities=18% Similarity=0.170 Sum_probs=80.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-.+..-.. ...++..
T Consensus 19 ~is~~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~----~~i~~~~ 81 (256)
T TIGR03873 19 GVDVTAP--PGSLTGLLGPNGSGKSTLLRLLAGALRP-----------DAGTVDLAGVDLHGLSRRARA----RRVALVE 81 (256)
T ss_pred eeeEEEc--CCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCEEcccCCHHHHh----hheEEec
Confidence 4445544 4489999999999999999999998877 789999988765432211000 0111111
Q ss_pred hhhcccCCcchhHHHHhc---------CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eee
Q 016864 135 QVISTARTCNCILIVLDA---------IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~---------~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
+........++.-.+.-. .......+.+.+.++.+++ ..++++..||+|+++|..++ +.+
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 161 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLL 161 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111111122222221110 0112334467778888888 46788999999999996665 444
Q ss_pred cccCCCCCHHHHH
Q 016864 195 TVTNTNLDLDTVK 207 (381)
Q Consensus 195 ~~~~~~l~~~~v~ 207 (381)
|||++++|.....
T Consensus 162 DEPt~~LD~~~~~ 174 (256)
T TIGR03873 162 DEPTNHLDVRAQL 174 (256)
T ss_pred cCccccCCHHHHH
Confidence 5555555554433
No 364
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.30 E-value=6.2e-12 Score=108.52 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=102.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+++|+... | ..+||+|+|||||||+++.|.+...| +.|.+.++|.... -.-......++..+
T Consensus 20 dVSF~ae~-G-ei~GlLG~NGAGKTT~LRmiatlL~P-----------~~G~v~idg~d~~-----~~p~~vrr~IGVl~ 81 (245)
T COG4555 20 DVSFEAEE-G-EITGLLGENGAGKTTLLRMIATLLIP-----------DSGKVTIDGVDTV-----RDPSFVRRKIGVLF 81 (245)
T ss_pred heeEEecc-c-eEEEEEcCCCCCchhHHHHHHHhccC-----------CCceEEEeecccc-----cChHHHhhhcceec
Confidence 55666555 4 89999999999999999999998888 8899988874332 11111111111111
Q ss_pred hhhcccCCcc---hhHHH---HhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccceeeecccCCCCCHHHH
Q 016864 135 QVISTARTCN---CILIV---LDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTV 206 (381)
Q Consensus 135 ~~~~~~~~~d---~il~v---vd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v 206 (381)
.........+ .+.++ .+.+. .+-..++.+....+++ ..+++...+|.|++++..++
T Consensus 82 ~e~glY~RlT~rEnl~~Fa~L~~l~~-~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iA--------------- 145 (245)
T COG4555 82 GERGLYARLTARENLKYFARLNGLSR-KEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIA--------------- 145 (245)
T ss_pred CCcChhhhhhHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHH---------------
Confidence 1111111111 12222 22222 2234455566666777 78899999999999996655
Q ss_pred HHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH----HHHHhcCCCeeeecccccccHHHH
Q 016864 207 KAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE----LEILDKLPHYCPVSAHLEWNLDGL 282 (381)
Q Consensus 207 ~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~----l~~l~~~~~~v~vSa~~~~gl~~L 282 (381)
+..++++.+.++|||+ +-+|+..... +..+.+...++.+|+|.-.-++.|
T Consensus 146 -----RAlvh~P~i~vlDEP~---------------------sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~Eveal 199 (245)
T COG4555 146 -----RALVHDPSILVLDEPT---------------------SGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEAL 199 (245)
T ss_pred -----HHHhcCCCeEEEcCCC---------------------CCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHh
Confidence 2223344444444444 5555543322 233345567899999998888888
Q ss_pred HHHHH
Q 016864 283 LEKIW 287 (381)
Q Consensus 283 ~~~i~ 287 (381)
++.+.
T Consensus 200 CDrvi 204 (245)
T COG4555 200 CDRVI 204 (245)
T ss_pred hheEE
Confidence 87653
No 365
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=9.3e-12 Score=117.23 Aligned_cols=142 Identities=18% Similarity=0.197 Sum_probs=89.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+++|++.. +..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-. .++... .....++..
T Consensus 25 ~vs~~i~~--Ge~~~i~G~nGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~-~~~~~~-~~~~ig~v~ 89 (287)
T PRK13637 25 NVNIEIED--GEFVGLIGHTGSGKSTLIQHLNGLLKP-----------TSGKIIIDGVDITDK-KVKLSD-IRKKVGLVF 89 (287)
T ss_pred eeEEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCC-----------CccEEEECCEECCCc-CccHHH-HhhceEEEe
Confidence 44555554 489999999999999999999999877 899999998765421 111000 001111111
Q ss_pred hhhc-ccCCcchhHHHH---hc--CCChHHHHHHHHHHHhcccc----cccCcCcccceeeccccce---------eeec
Q 016864 135 QVIS-TARTCNCILIVL---DA--IKPITHKRLIEKELEGFGIR----LNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 135 ~~~~-~~~~~d~il~vv---d~--~~~~~~~~~i~~~l~~~~~~----~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
|... .+...++.-.+. .. ..+....+.+.+.++.+++. .++++..||+|+++|..++ +.+|
T Consensus 90 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllD 169 (287)
T PRK13637 90 QYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILD 169 (287)
T ss_pred cCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2110 011112221111 11 11222345677888888883 5788999999999998886 7778
Q ss_pred ccCCCCCHHHHHHHHH
Q 016864 196 VTNTNLDLDTVKAICS 211 (381)
Q Consensus 196 ~~~~~l~~~~v~~~l~ 211 (381)
||++++|......+++
T Consensus 170 EPt~gLD~~~~~~l~~ 185 (287)
T PRK13637 170 EPTAGLDPKGRDEILN 185 (287)
T ss_pred CCccCCCHHHHHHHHH
Confidence 9999998877665544
No 366
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.29 E-value=1.2e-11 Score=109.83 Aligned_cols=133 Identities=15% Similarity=0.128 Sum_probs=84.8
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCc--ccccccccCCCcchhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDL--PGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~Dt--pG~~~~~~~~~~~~~~ 135 (381)
+++....+.+++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+. .++.. +
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~----------~ 77 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-----------SSGNIYYKNCNINNIAKPYCTYIG----------H 77 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCcccChhhhhhEEecc----------C
Confidence 4444445589999999999999999999998877 78999998866532110 11111 1
Q ss_pred hhcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHH
Q 016864 136 VISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLD 204 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~ 204 (381)
.........+...+..........+.+...++.+++ ..++++..||+|+++|..++ +.+|||++++|..
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~ 157 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE 157 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 111111122211111000000122345666777777 46778899999999998876 7779999999987
Q ss_pred HHHHHHH
Q 016864 205 TVKAICS 211 (381)
Q Consensus 205 ~v~~~l~ 211 (381)
....+.+
T Consensus 158 ~~~~l~~ 164 (195)
T PRK13541 158 NRDLLNN 164 (195)
T ss_pred HHHHHHH
Confidence 7665544
No 367
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=9.1e-12 Score=113.70 Aligned_cols=118 Identities=20% Similarity=0.204 Sum_probs=71.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-.+.. ....+...+.
T Consensus 18 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~-----------~~G~i~~~g~~~~~~~~~------~~~i~~~~q~ 80 (232)
T cd03300 18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP-----------TSGEILLDGKDITNLPPH------KRPVNTVFQN 80 (232)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCChh------hcceEEEecc
Confidence 33444444589999999999999999999999877 789999988765321100 0111111121
Q ss_pred hcccCCcch---hHHHHhc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 137 ISTARTCNC---ILIVLDA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 137 ~~~~~~~d~---il~vvd~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
........+ +.+.... ..+......+...++.+++ ..++.+..+|+|+++|..++
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~la 142 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIA 142 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 111222222 2211111 1123334456677788888 46778899999999996554
No 368
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=9.8e-12 Score=116.31 Aligned_cols=140 Identities=19% Similarity=0.226 Sum_probs=87.4
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+ ....++..+.
T Consensus 23 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~q~ 87 (274)
T PRK13647 23 GLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP-----------QRGRVKVMGREVNAENEKWV----RSKVGLVFQD 87 (274)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CceEEEECCEECCCCCHHHH----HhhEEEEecC
Confidence 33444444589999999999999999999999877 88999999876532110000 0111111121
Q ss_pred hc-ccCCcchhHHHH----hc-CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 137 IS-TARTCNCILIVL----DA-IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 137 ~~-~~~~~d~il~vv----d~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
.. .+...++.-.+. .. .......+.+...++.+++ ..++.+..||+|+++|..++ +.+|||++
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~ 167 (274)
T PRK13647 88 PDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167 (274)
T ss_pred hhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 10 111112221111 11 1112233567778888888 57788999999999998876 67788888
Q ss_pred CCCHHHHHHHHH
Q 016864 200 NLDLDTVKAICS 211 (381)
Q Consensus 200 ~l~~~~v~~~l~ 211 (381)
++|......+++
T Consensus 168 ~LD~~~~~~l~~ 179 (274)
T PRK13647 168 YLDPRGQETLME 179 (274)
T ss_pred CCCHHHHHHHHH
Confidence 888776665544
No 369
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.29 E-value=9.9e-12 Score=119.14 Aligned_cols=143 Identities=16% Similarity=0.174 Sum_probs=90.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.+-..... .....++..|.
T Consensus 39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-----------~~G~I~~~G~~i~~~~~~~~~~-~r~~i~~v~Q~ 106 (331)
T PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-----------TDGEVAWLGKDLLGMKDDEWRA-VRSDIQMIFQD 106 (331)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-----------CCcEEEECCEECCcCCHHHHHH-HhCceEEEecC
Confidence 34444444589999999999999999999998877 7899999997654322111100 01112222222
Q ss_pred h--cccCCcchhHHH---HhcC----CChHHHHHHHHHHHhccc---ccccCcCcccceeeccccce---------eeec
Q 016864 137 I--STARTCNCILIV---LDAI----KPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 137 ~--~~~~~~d~il~v---vd~~----~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
. ...+...+.-.+ +... ......+.+.+.++.+++ ..++++..||+|+++|..++ +++|
T Consensus 107 ~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilD 186 (331)
T PRK15079 107 PLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICD 186 (331)
T ss_pred chhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1 112222222221 1111 112334566788888888 35889999999999998887 7778
Q ss_pred ccCCCCCHHHHHHHHH
Q 016864 196 VTNTNLDLDTVKAICS 211 (381)
Q Consensus 196 ~~~~~l~~~~v~~~l~ 211 (381)
||++++|......+++
T Consensus 187 EPts~LD~~~~~~i~~ 202 (331)
T PRK15079 187 EPVSALDVSIQAQVVN 202 (331)
T ss_pred CCCccCCHHHHHHHHH
Confidence 9999998876665554
No 370
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.29 E-value=1.1e-11 Score=115.33 Aligned_cols=143 Identities=18% Similarity=0.181 Sum_probs=80.8
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCc-ccccccccCCCcch
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDL-PGIIEGAKDGKGRG 133 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~Dt-pG~~~~~~~~~~~~ 133 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+.+ +..|.+.++|..+.-.+. +.-........++.
T Consensus 22 ~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~--------~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~ 91 (262)
T PRK09984 22 AVDLNIH--HGEMVALLGPSGSGKSTLLRHLSGLITGDK--------SAGSHIELLGRTVQREGRLARDIRKSRANTGYI 91 (262)
T ss_pred cceEEEc--CCcEEEEECCCCCCHHHHHHHHhccCCCCC--------CCceEEEECCEecccccccchhHHHHHhheEEE
Confidence 4455544 448999999999999999999999876510 025889998876532110 00000000111111
Q ss_pred hhhhcccCCcchhHHHHhcC-------------CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce-------
Q 016864 134 RQVISTARTCNCILIVLDAI-------------KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN------- 191 (381)
Q Consensus 134 ~~~~~~~~~~d~il~vvd~~-------------~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~------- 191 (381)
.+........++.-.+.-.. ......+.+.+.++.+++ ..++.+..||+|+++|..++
T Consensus 92 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 171 (262)
T PRK09984 92 FQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQA 171 (262)
T ss_pred ccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCC
Confidence 22222222233322221100 012234567788888888 46788999999999996655
Q ss_pred --eeecccCCCCCHHHHH
Q 016864 192 --FTSTVTNTNLDLDTVK 207 (381)
Q Consensus 192 --i~~~~~~~~l~~~~v~ 207 (381)
+.+|||++++|.....
T Consensus 172 ~llllDEPt~~LD~~~~~ 189 (262)
T PRK09984 172 KVILADEPIASLDPESAR 189 (262)
T ss_pred CEEEecCccccCCHHHHH
Confidence 4445555555544433
No 371
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.4e-12 Score=131.54 Aligned_cols=116 Identities=24% Similarity=0.426 Sum_probs=93.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHH---hcccccccc---------------cccceeeeecEEEEEcC-EEeeecCcccccc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKL---TGTFSEVAS---------------YEFTTLTCIPGVITYRG-AKIQLLDLPGIIE 124 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L---~g~~~~~~~---------------~~~tT~~~~~g~i~~~g-~~i~l~DtpG~~~ 124 (381)
..+.|+|+|+-.+|||||..+| +|....+++ ..+.|+....-.+.|.| ..+.++||||.++
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 4479999999999999999998 555543332 24788888888899996 9999999999998
Q ss_pred cccCCCcchhhhhcccCCcchhHHHHhcCCC-hHHHHHHHHHHHhcccccccCcCcccceeeccccce
Q 016864 125 GAKDGKGRGRQVISTARTCNCILIVLDAIKP-ITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~-~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~ 191 (381)
+. .+....++-+|..+.|+|+..+ ..+.+.+...+..+++ +..++.++.+|.+..
T Consensus 89 Ft-------~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~v-----p~i~fiNKmDR~~a~ 144 (697)
T COG0480 89 FT-------IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGV-----PRILFVNKMDRLGAD 144 (697)
T ss_pred cH-------HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCC-----CeEEEEECccccccC
Confidence 65 5566677899999999999987 5677888888877776 677777888876665
No 372
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=6e-12 Score=118.71 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=88.6
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeec-CcccccccccCCCcch
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLL-DLPGIIEGAKDGKGRG 133 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~-DtpG~~~~~~~~~~~~ 133 (381)
++++++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-. +..... ......++.
T Consensus 25 ~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~-~~~~~ig~v 90 (290)
T PRK13634 25 DVNVSIP--SGSYVAIIGHTGSGKSTLLQHLNGLLQP-----------TSGTVTIGERVITAGKKNKKLK-PLRKKVGIV 90 (290)
T ss_pred eEEEEEc--CCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchHH-HHHhhEEEE
Confidence 4444444 4589999999999999999999999877 889999999876321 000000 000111111
Q ss_pred hhhhc-ccCCcchhHHHH----hc-CCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccce---------eeec
Q 016864 134 RQVIS-TARTCNCILIVL----DA-IKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 134 ~~~~~-~~~~~d~il~vv----d~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
.|... .+...++.-.+. .. ..+....+.+.+.++.+++. .++++..||+|+++|..++ +.+|
T Consensus 91 ~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllD 170 (290)
T PRK13634 91 FQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLD 170 (290)
T ss_pred eeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 11100 011112211111 11 11122335677788888883 4778999999999998886 7778
Q ss_pred ccCCCCCHHHHHHHHH
Q 016864 196 VTNTNLDLDTVKAICS 211 (381)
Q Consensus 196 ~~~~~l~~~~v~~~l~ 211 (381)
||++++|......++.
T Consensus 171 EPt~~LD~~~~~~l~~ 186 (290)
T PRK13634 171 EPTAGLDPKGRKEMME 186 (290)
T ss_pred CCcccCCHHHHHHHHH
Confidence 8998888877666544
No 373
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.29 E-value=9.8e-12 Score=127.63 Aligned_cols=138 Identities=16% Similarity=0.221 Sum_probs=77.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC-EEeeecC-cccccccccCCCcchh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG-AKIQLLD-LPGIIEGAKDGKGRGR 134 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g-~~i~l~D-tpG~~~~~~~~~~~~~ 134 (381)
++++....+.+++|+|+||||||||+++|+|...+ ..|.+.+++ ..+.++. .|.+.+.. ...
T Consensus 25 ~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p-----------~~G~i~~~~~~~i~~v~Q~~~~~~~~-----tv~ 88 (556)
T PRK11819 25 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-----------FEGEARPAPGIKVGYLPQEPQLDPEK-----TVR 88 (556)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEecCCCCCCCC-----cHH
Confidence 34444444589999999999999999999998777 678877753 2232221 11111100 000
Q ss_pred hhhcc-cC-----------------Cc--c---------hhHHHHhcCCChHHHHHHHHHHHhccc-ccccCcCccccee
Q 016864 135 QVIST-AR-----------------TC--N---------CILIVLDAIKPITHKRLIEKELEGFGI-RLNKQPPNLTFRK 184 (381)
Q Consensus 135 ~~~~~-~~-----------------~~--d---------~il~vvd~~~~~~~~~~i~~~l~~~~~-~~~~~~~~ls~~~ 184 (381)
+.+.. .. .. + .+.-..+..........+...+..+++ ..++++..||+|+
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGq 168 (556)
T PRK11819 89 ENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGE 168 (556)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHHH
Confidence 11000 00 00 0 000000000001113456667777887 5678899999999
Q ss_pred eccccce---------eeecccCCCCCHHHHHHHH
Q 016864 185 KDKGGIN---------FTSTVTNTNLDLDTVKAIC 210 (381)
Q Consensus 185 ~~r~~~~---------i~~~~~~~~l~~~~v~~~l 210 (381)
++|..++ +.+|||++++|.+....+.
T Consensus 169 kqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~ 203 (556)
T PRK11819 169 RRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLE 203 (556)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHH
Confidence 9997776 5667777777776555443
No 374
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.28 E-value=5.2e-12 Score=129.65 Aligned_cols=165 Identities=21% Similarity=0.261 Sum_probs=100.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+.+++|+|+||||||||+++|+|...+ ..|.+.+++ .+. .|++.+...
T Consensus 342 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~-~~~----i~~v~q~~~-------- 397 (556)
T PRK11819 342 DLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP-----------DSGTIKIGE-TVK----LAYVDQSRD-------- 397 (556)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECC-ceE----EEEEeCchh--------
Confidence 34444445589999999999999999999998877 788888753 211 133322110
Q ss_pred hcccCCcchhHHHH---hcCCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccceeeecccCCCCCHHHHHHHH
Q 016864 137 ISTARTCNCILIVL---DAIKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAIC 210 (381)
Q Consensus 137 ~~~~~~~d~il~vv---d~~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l 210 (381)
......++.-.+. ...............++.+++ ..++++..||+|+++|..++
T Consensus 398 -~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la------------------- 457 (556)
T PRK11819 398 -ALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLA------------------- 457 (556)
T ss_pred -hcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH-------------------
Confidence 0011122221111 111100111234467888888 25788999999999995543
Q ss_pred HHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH-HHhcCCCeeeecccccccHHHHHHHHH
Q 016864 211 SEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE-ILDKLPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 211 ~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~-~l~~~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
...+.+++++++|||| |.+|..+.+.+. .+.++.+++++++|+-..+..++++++
T Consensus 458 -~al~~~p~lllLDEPt---------------------~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~ 513 (556)
T PRK11819 458 -KTLKQGGNVLLLDEPT---------------------NDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHIL 513 (556)
T ss_pred -HHHhcCCCEEEEcCCC---------------------CCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEE
Confidence 2234566777777777 777776666553 334445577888898777776666543
No 375
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.28 E-value=1.2e-11 Score=114.36 Aligned_cols=140 Identities=19% Similarity=0.221 Sum_probs=82.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecC---ccccc------cc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLD---LPGII------EG 125 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~D---tpG~~------~~ 125 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-++ ..+.. ..
T Consensus 18 ~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~ 84 (252)
T TIGR03005 18 GLNFSVA--AGEKVALIGPSGSGKSTILRILMTLEPI-----------DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQ 84 (252)
T ss_pred eeeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccccccccchhHHHH
Confidence 3444444 4489999999999999999999998877 7899999887664221 00000 00
Q ss_pred ccCCCcchhhhhcccCCcchhHHHHh------cCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce------
Q 016864 126 AKDGKGRGRQVISTARTCNCILIVLD------AIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN------ 191 (381)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~d~il~vvd------~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~------ 191 (381)
.....+...+....+....+.-.+.- ........+.+.+.++.+++ ..++.+..||+|+++|..++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~ 164 (252)
T TIGR03005 85 MRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMR 164 (252)
T ss_pred HhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcC
Confidence 01112222222222222333222211 11112233456778888888 45678899999999997665
Q ss_pred ---eeecccCCCCCHHHHH
Q 016864 192 ---FTSTVTNTNLDLDTVK 207 (381)
Q Consensus 192 ---i~~~~~~~~l~~~~v~ 207 (381)
+.+|||++++|.....
T Consensus 165 p~llllDEP~~~LD~~~~~ 183 (252)
T TIGR03005 165 PKVMLFDEVTSALDPELVG 183 (252)
T ss_pred CCEEEEeCCcccCCHHHHH
Confidence 4445555555554433
No 376
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.28 E-value=7.9e-12 Score=124.32 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=66.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc---cc----------------------cc------ccccceeeeecEEEEEcCEEe
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF---SE----------------------VA------SYEFTTLTCIPGVITYRGAKI 114 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~---~~----------------------~~------~~~~tT~~~~~g~i~~~g~~i 114 (381)
.+|+++|+.++|||||+.+|+... .. +. -..+.|++.....+.+++..+
T Consensus 8 ~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~i 87 (446)
T PTZ00141 8 INLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYF 87 (446)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeEE
Confidence 689999999999999999985311 00 01 135789988888888889999
Q ss_pred eecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCCh
Q 016864 115 QLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPI 156 (381)
Q Consensus 115 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~ 156 (381)
.++||||..+.. .++...+..+|++++|+|+..+.
T Consensus 88 ~lIDtPGh~~f~-------~~~~~g~~~aD~ailVVda~~G~ 122 (446)
T PTZ00141 88 TIIDAPGHRDFI-------KNMITGTSQADVAILVVASTAGE 122 (446)
T ss_pred EEEECCChHHHH-------HHHHHhhhhcCEEEEEEEcCCCc
Confidence 999999976643 56666778999999999998753
No 377
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.28 E-value=7.9e-12 Score=112.86 Aligned_cols=154 Identities=21% Similarity=0.264 Sum_probs=100.9
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCc-cccc-ccccCCCcchhhhhcccC
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDL-PGII-EGAKDGKGRGRQVISTAR 141 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~Dt-pG~~-~~~~~~~~~~~~~~~~~~ 141 (381)
+.-.-+|.|++|+|||||+|+|+|...| ..|.|..+|..+ .|+ -|++ +.....+++.+|-..+++
T Consensus 23 ~~GvTAlFG~SGsGKTslin~IaGL~rP-----------deG~I~lngr~L--~Ds~k~i~lp~~~RriGYVFQDARLFp 89 (352)
T COG4148 23 ARGITALFGPSGSGKTSLINMIAGLTRP-----------DEGRIELNGRVL--VDAEKGIFLPPEKRRIGYVFQDARLFP 89 (352)
T ss_pred CCceEEEecCCCCChhhHHHHHhccCCc-----------cccEEEECCEEe--ecccCCcccChhhheeeeEeecccccc
Confidence 3348999999999999999999999888 999999988654 343 2222 222333455555555555
Q ss_pred CcchhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHHH---HH
Q 016864 142 TCNCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDT---VK 207 (381)
Q Consensus 142 ~~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~---v~ 207 (381)
+.++-=.+.=+... ............+|| .+.++|..||+|++||.+|. +.+|||++.+|... +.
T Consensus 90 H~tVrgNL~YG~~~-~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eil 168 (352)
T COG4148 90 HYTVRGNLRYGMWK-SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREIL 168 (352)
T ss_pred ceEEecchhhhhcc-cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHH
Confidence 55542111111111 122334456667788 78899999999999999886 67788888877643 33
Q ss_pred HHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcC
Q 016864 208 AICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQI 254 (381)
Q Consensus 208 ~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~ 254 (381)
.+|+.+. ....+|+++|.+-+|.+
T Consensus 169 pylERL~-----------------------~e~~IPIlYVSHS~~Ev 192 (352)
T COG4148 169 PYLERLR-----------------------DEINIPILYVSHSLDEV 192 (352)
T ss_pred HHHHHHH-----------------------HhcCCCEEEEecCHHHH
Confidence 3333321 12237999999888743
No 378
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.28 E-value=2.5e-11 Score=104.27 Aligned_cols=131 Identities=24% Similarity=0.200 Sum_probs=94.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++...++..|+++||+|||||||+|.++|-..| ..|.+.++|.++. -||-.. +...|.
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P-----------~~G~i~l~~r~i~---gPgaer------gvVFQ~ 82 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-----------SRGSIQLNGRRIE---GPGAER------GVVFQN 82 (259)
T ss_pred ccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc-----------ccceEEECCEecc---CCCccc------eeEecc
Confidence 34444445589999999999999999999998877 8999999998765 244222 234555
Q ss_pred hcccCCcchhHHHHh-----cCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIVLD-----AIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~vvd-----~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
-.+++..+++-.|-- ...+....+...+.|...|+ .-.+++-.||+|++||.+++ +.+|||+..
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgA 162 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGA 162 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhh
Confidence 556677777655422 22334455666777888888 45778889999999999997 666899887
Q ss_pred CCHHHHH
Q 016864 201 LDLDTVK 207 (381)
Q Consensus 201 l~~~~v~ 207 (381)
+|.-.-+
T Consensus 163 lDa~tRe 169 (259)
T COG4525 163 LDALTRE 169 (259)
T ss_pred HHHHHHH
Confidence 7764433
No 379
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.28 E-value=6.3e-12 Score=114.52 Aligned_cols=120 Identities=22% Similarity=0.236 Sum_probs=69.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..-. .....++..
T Consensus 18 ~vs~~i~--~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~ 81 (230)
T TIGR03410 18 GVSLEVP--KGEVTCVLGRNGVGKTTLLKTLMGLLPV-----------KSGSIRLDGEDITKLPPHER---ARAGIAYVP 81 (230)
T ss_pred ceeeEEC--CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCCHHHH---HHhCeEEec
Confidence 4445544 4489999999999999999999999877 88999998876543221000 001112222
Q ss_pred hhhcccCCcchhHHH---HhcCCChHHHHHHHHHHHhcc-c--ccccCcCcccceeeccccce
Q 016864 135 QVISTARTCNCILIV---LDAIKPITHKRLIEKELEGFG-I--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~~~~~~~~~~i~~~l~~~~-~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
+........++.-.+ ...... ...+.....+..++ + ..++++..||+|+++|..++
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la 143 (230)
T TIGR03410 82 QGREIFPRLTVEENLLTGLAALPR-RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIA 143 (230)
T ss_pred cCCcccCCCcHHHHHHHHHHhcCc-chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHH
Confidence 221122222332211 111111 11223344455554 2 56788999999999996654
No 380
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.28 E-value=5e-12 Score=129.69 Aligned_cols=165 Identities=21% Similarity=0.255 Sum_probs=100.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE-EeeecCcccccccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA-KIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~-~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
++++....+.+++|+|+||||||||+++|+|...+ ..|.+.+++. .+ |++.+....
T Consensus 340 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~G~i~~~~~~~i------~~v~q~~~~------ 396 (552)
T TIGR03719 340 DLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP-----------DSGTIKIGETVKL------AYVDQSRDA------ 396 (552)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCeEEEECCceEE------EEEeCCccc------
Confidence 34444445589999999999999999999998877 7888887532 22 322221100
Q ss_pred hhcccCCcchhHHHH---hcCCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccceeeecccCCCCCHHHHHHH
Q 016864 136 VISTARTCNCILIVL---DAIKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAI 209 (381)
Q Consensus 136 ~~~~~~~~d~il~vv---d~~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~ 209 (381)
.....++.-.+. ...............+..+++. .++++..||+|+++|..++
T Consensus 397 ---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la------------------ 455 (552)
T TIGR03719 397 ---LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLA------------------ 455 (552)
T ss_pred ---cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH------------------
Confidence 011112211111 1001111112345678888882 5788999999999995544
Q ss_pred HHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH-HHhcCCCeeeecccccccHHHHHHHHHH
Q 016864 210 CSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE-ILDKLPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 210 l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~-~l~~~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
.....+++++++|||| |.+|..+.+.+. .+.++.+++++++|+-..+..++++++.
T Consensus 456 --~al~~~p~lllLDEPt---------------------~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~ 512 (552)
T TIGR03719 456 --KTLKSGGNVLLLDEPT---------------------NDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILA 512 (552)
T ss_pred --HHHhhCCCEEEEeCCC---------------------CCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEE
Confidence 2224456677777777 777766655543 3344455788888888777776665543
No 381
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=9.6e-12 Score=116.59 Aligned_cols=139 Identities=19% Similarity=0.249 Sum_probs=85.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.+...+ ....+...+.
T Consensus 22 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~q~ 86 (277)
T PRK13652 22 NINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP-----------TSGSVLIRGEPITKENIREV----RKFVGLVFQN 86 (277)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHH----HhheEEEecC
Confidence 33444444589999999999999999999998877 89999999876542211110 0011111111
Q ss_pred hc-ccCCcchhHHHH----h-cCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 137 IS-TARTCNCILIVL----D-AIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 137 ~~-~~~~~d~il~vv----d-~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
.. .+....+.-.+. . ...+....+.+.+.++.+++ ...+.+..||+|+++|..++ +++|||++
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~ 166 (277)
T PRK13652 87 PDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166 (277)
T ss_pred cccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 00 011112211111 1 11222233456778888888 57888999999999997776 66677777
Q ss_pred CCCHHHHHHHH
Q 016864 200 NLDLDTVKAIC 210 (381)
Q Consensus 200 ~l~~~~v~~~l 210 (381)
++|......++
T Consensus 167 gLD~~~~~~l~ 177 (277)
T PRK13652 167 GLDPQGVKELI 177 (277)
T ss_pred cCCHHHHHHHH
Confidence 77766555443
No 382
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.28 E-value=1.8e-11 Score=111.93 Aligned_cols=139 Identities=19% Similarity=0.153 Sum_probs=89.0
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. .. ...+...+..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~i~~~~~~-~~----~~i~~~~q~~ 83 (236)
T TIGR03864 20 VSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA-----------QEGQISVAGHDLRRAPRA-AL----ARLGVVFQQP 83 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcccCChh-hh----hhEEEeCCCC
Confidence 3444444589999999999999999999999877 789999988765321110 00 0111111111
Q ss_pred cccCCcchhHHH---HhcCC--ChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 138 STARTCNCILIV---LDAIK--PITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 138 ~~~~~~d~il~v---vd~~~--~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
......++.-.+ ..... .....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++
T Consensus 84 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~L 163 (236)
T TIGR03864 84 TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGL 163 (236)
T ss_pred CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 111222222111 11111 12234456778888888 46788999999999998886 7789999999
Q ss_pred CHHHHHHHHHH
Q 016864 202 DLDTVKAICSE 212 (381)
Q Consensus 202 ~~~~v~~~l~~ 212 (381)
|......+.+.
T Consensus 164 D~~~~~~l~~~ 174 (236)
T TIGR03864 164 DPASRAAIVAH 174 (236)
T ss_pred CHHHHHHHHHH
Confidence 99877766553
No 383
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.28 E-value=3.2e-11 Score=108.97 Aligned_cols=83 Identities=22% Similarity=0.352 Sum_probs=60.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccccc----------------ccccceeeeecEEEEEc----------CEEeeecCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVA----------------SYEFTTLTCIPGVITYR----------GAKIQLLDL 119 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~----------------~~~~tT~~~~~g~i~~~----------g~~i~l~Dt 119 (381)
+.|+++|+.++|||||+.+|......++ ...+.|++.....+.|. +..+.++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3799999999999999999965432111 12355666555555564 577899999
Q ss_pred ccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 120 PGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 120 pG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
||..+.. ......++.+|++++|+|+..+
T Consensus 81 PG~~~f~-------~~~~~~l~~aD~~ilVvD~~~g 109 (222)
T cd01885 81 PGHVDFS-------SEVTAALRLCDGALVVVDAVEG 109 (222)
T ss_pred CCccccH-------HHHHHHHHhcCeeEEEEECCCC
Confidence 9987643 4555667899999999999875
No 384
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.28 E-value=1.4e-11 Score=113.17 Aligned_cols=137 Identities=21% Similarity=0.266 Sum_probs=76.5
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhccc--ccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTF--SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGR 132 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~--~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~ 132 (381)
+.++++. .+..++|+|+||||||||+++|+|.. .+ ..|.+.++|.++.-.+.... ...+.++
T Consensus 18 ~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~ 81 (243)
T TIGR01978 18 GVNLTVK--KGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-----------TSGTILFKGQDLLELEPDER---ARAGLFL 81 (243)
T ss_pred ccceEEc--CCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CcceEEECCEecCCCCHHHh---hccceEe
Confidence 3445544 44899999999999999999999984 35 78999998876532211000 0011111
Q ss_pred hhhhhcccCCcch---hHHHHhcC---------CChHHHHHHHHHHHhcccc---cccCcC-cccceeeccccce-----
Q 016864 133 GRQVISTARTCNC---ILIVLDAI---------KPITHKRLIEKELEGFGIR---LNKQPP-NLTFRKKDKGGIN----- 191 (381)
Q Consensus 133 ~~~~~~~~~~~d~---il~vvd~~---------~~~~~~~~i~~~l~~~~~~---~~~~~~-~ls~~~~~r~~~~----- 191 (381)
..+........++ +....... ......+.+...++.+++. .++++. .||+|+++|..++
T Consensus 82 v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~ 161 (243)
T TIGR01978 82 AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL 161 (243)
T ss_pred eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc
Confidence 1222112222222 11111110 1111234567788888883 355665 4999999996665
Q ss_pred ----eeecccCCCCCHHHHH
Q 016864 192 ----FTSTVTNTNLDLDTVK 207 (381)
Q Consensus 192 ----i~~~~~~~~l~~~~v~ 207 (381)
+.+|||++++|.....
T Consensus 162 ~p~llllDEPt~~LD~~~~~ 181 (243)
T TIGR01978 162 EPKLAILDEIDSGLDIDALK 181 (243)
T ss_pred CCCEEEecCCcccCCHHHHH
Confidence 4444555555544433
No 385
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.28 E-value=1.5e-11 Score=112.99 Aligned_cols=60 Identities=27% Similarity=0.422 Sum_probs=53.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEG 125 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~ 125 (381)
.+|+++|++|||||||+|+|+|... .+++++++|..+......++|..+.++||||+.+.
T Consensus 32 ~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 7999999999999999999999874 56778888988888888888999999999999765
No 386
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.28 E-value=5e-12 Score=110.84 Aligned_cols=91 Identities=23% Similarity=0.315 Sum_probs=61.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-.+.+.+ .
T Consensus 17 ~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-----------~~G~v~~~g~~~~~~~~~~~-----------~-- 72 (180)
T cd03214 17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-----------SSGEILLDGKDLASLSPKEL-----------A-- 72 (180)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCcCCHHHH-----------H--
Confidence 33444444589999999999999999999998877 88999998876532211100 0
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
..+-++.. .++.+++ ...+.+..||+|+++|..++
T Consensus 73 -------~~i~~~~q-------------~l~~~gl~~~~~~~~~~LS~G~~qrl~la 109 (180)
T cd03214 73 -------RKIAYVPQ-------------ALELLGLAHLADRPFNELSGGERQRVLLA 109 (180)
T ss_pred -------HHHhHHHH-------------HHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence 00111111 4455555 35667889999999996654
No 387
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.28 E-value=2.2e-11 Score=116.39 Aligned_cols=66 Identities=26% Similarity=0.217 Sum_probs=51.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcc----cc------------ccccccc---ceeeeec---EEEEEc-C----EEeee
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGT----FS------------EVASYEF---TTLTCIP---GVITYR-G----AKIQL 116 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~----~~------------~~~~~~~---tT~~~~~---g~i~~~-g----~~i~l 116 (381)
|...||++|+-|+|||||+|++++. .. .+++.+| ||.||.. --+.+. . .++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 5589999999999999999999998 21 2467789 9999876 434432 2 58999
Q ss_pred cCcccccccccCC
Q 016864 117 LDLPGIIEGAKDG 129 (381)
Q Consensus 117 ~DtpG~~~~~~~~ 129 (381)
+||+|+......|
T Consensus 96 IDcvG~~v~GalG 108 (492)
T TIGR02836 96 VDCVGYTVKGALG 108 (492)
T ss_pred EECCCcccCCCcc
Confidence 9999998654433
No 388
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.28 E-value=1.2e-11 Score=112.20 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=75.8
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecC--cccccccccCCCcchhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLD--LPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~D--tpG~~~~~~~~~~~~~~ 135 (381)
+++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++...+ ..|+.. +
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~~~~~~~~~~~~~~~~~----------q 77 (223)
T TIGR03740 19 ISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-----------TSGEIIFDGHPWTRKDLHKIGSLI----------E 77 (223)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEeccccccccEEEEc----------C
Confidence 3444444489999999999999999999998777 8899999886543111 011111 1
Q ss_pred hhcccCCcch---hHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 136 VISTARTCNC---ILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 136 ~~~~~~~~d~---il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
........++ +.+...... .....+.+.++.+++ ..++.+..||+|+++|..++ +.+|||++++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~L 155 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLG--LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL 155 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcC--CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence 1111111222 211111111 112356677788888 46778899999999996554 4444555555
Q ss_pred CHHHHH
Q 016864 202 DLDTVK 207 (381)
Q Consensus 202 ~~~~v~ 207 (381)
|.....
T Consensus 156 D~~~~~ 161 (223)
T TIGR03740 156 DPIGIQ 161 (223)
T ss_pred CHHHHH
Confidence 544333
No 389
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.28 E-value=1.1e-11 Score=115.45 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=70.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.... +... ....++..+.
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-~~~~---~~~i~~v~q~ 95 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----------TSGELLIDDHPLHFGD-YSYR---SQRIRMIFQD 95 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCc-hhhH---hccEEEEecC
Confidence 33444444589999999999999999999999877 8899999887654211 1100 0111111111
Q ss_pred hc--ccCCcch---hHHHHhc---CCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccce
Q 016864 137 IS--TARTCNC---ILIVLDA---IKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 137 ~~--~~~~~d~---il~vvd~---~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~ 191 (381)
.. ......+ +.+.... .......+.+.+.++.+++ .....+..||+|+++|..++
T Consensus 96 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 96 PSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred chhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 10 0111111 1111111 1112233456778888888 24667889999999996665
No 390
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.2e-11 Score=126.32 Aligned_cols=139 Identities=19% Similarity=0.182 Sum_probs=76.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE-Eeeec-CcccccccccCCCcchh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA-KIQLL-DLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~-~i~l~-DtpG~~~~~~~~~~~~~ 134 (381)
++++....+.+++|+|+||||||||+++|+|...+ ..|.+.+++. .+.++ ..+.+.... ...
T Consensus 19 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~~~~i~~~~q~~~~~~~~-----tv~ 82 (530)
T PRK15064 19 NISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP-----------SAGNVSLDPNERLGKLRQDQFAFEEF-----TVL 82 (530)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEeccCCcCCCC-----cHH
Confidence 33444444589999999999999999999998776 6788877652 22221 001111000 000
Q ss_pred hhhccc-----------------CC--cchhHHH------HhcCCChHHHHHHHHHHHhcccc--c-ccCcCcccceeec
Q 016864 135 QVISTA-----------------RT--CNCILIV------LDAIKPITHKRLIEKELEGFGIR--L-NKQPPNLTFRKKD 186 (381)
Q Consensus 135 ~~~~~~-----------------~~--~d~il~v------vd~~~~~~~~~~i~~~l~~~~~~--~-~~~~~~ls~~~~~ 186 (381)
+.+... .. .+..+-+ ............+...++.+++. . .+++..||+|+++
T Consensus 83 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~q 162 (530)
T PRK15064 83 DTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKL 162 (530)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHH
Confidence 000000 00 0000000 00001112234567788888883 2 4578999999999
Q ss_pred cccce---------eeecccCCCCCHHHHHHHHH
Q 016864 187 KGGIN---------FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 187 r~~~~---------i~~~~~~~~l~~~~v~~~l~ 211 (381)
|..++ +.+|||++++|......+.+
T Consensus 163 rv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~ 196 (530)
T PRK15064 163 RVLLAQALFSNPDILLLDEPTNNLDINTIRWLED 196 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH
Confidence 97775 55566666666665554433
No 391
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=1.1e-11 Score=125.87 Aligned_cols=143 Identities=16% Similarity=0.215 Sum_probs=90.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ++..|.+.++|..+.-... . .......++..
T Consensus 23 ~isl~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------~~~~G~i~~~g~~~~~~~~-~--~~~~~~i~~v~ 88 (506)
T PRK13549 23 NVSLKVR--AGEIVSLCGENGAGKSTLMKVLSGVYPH---------GTYEGEIIFEGEELQASNI-R--DTERAGIAIIH 88 (506)
T ss_pred ceeEEEe--CCeEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCH-H--HHHHCCeEEEE
Confidence 4455554 4489999999999999999999998653 1267999998876532110 0 00011122222
Q ss_pred hhhcccCCcchhHHHH---hc-----CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeec
Q 016864 135 QVISTARTCNCILIVL---DA-----IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv---d~-----~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
|........++.-.+. .. .......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|
T Consensus 89 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD 168 (506)
T PRK13549 89 QELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILD 168 (506)
T ss_pred eccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2211222223322211 10 0112233567788888888 56788999999999998886 7789
Q ss_pred ccCCCCCHHHHHHHHH
Q 016864 196 VTNTNLDLDTVKAICS 211 (381)
Q Consensus 196 ~~~~~l~~~~v~~~l~ 211 (381)
||++++|......+++
T Consensus 169 EPt~~LD~~~~~~l~~ 184 (506)
T PRK13549 169 EPTASLTESETAVLLD 184 (506)
T ss_pred CCCCCCCHHHHHHHHH
Confidence 9999999887666554
No 392
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5e-11 Score=116.21 Aligned_cols=189 Identities=24% Similarity=0.284 Sum_probs=127.8
Q ss_pred cCCcEEEEEcCCCCchHHHHHHH---hccccc------------ccccccceeeeecEEEEEcC---EEeeecCcccccc
Q 016864 63 SGDSRVGLVGFPSVGKSTLLNKL---TGTFSE------------VASYEFTTLTCIPGVITYRG---AKIQLLDLPGIIE 124 (381)
Q Consensus 63 ~~~~~i~lvG~~naGKSTLln~L---~g~~~~------------~~~~~~tT~~~~~g~i~~~g---~~i~l~DtpG~~~ 124 (381)
+....++||-+---|||||.-.| ||...+ +.-..|.|+......+.|.+ ..+.++||||..+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 34568999999999999999998 453211 22356999999988888877 7889999999988
Q ss_pred cccCCCcchhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHH
Q 016864 125 GAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLD 204 (381)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~ 204 (381)
+. .+....+..||.+++|||++.+... +.+....-
T Consensus 138 Fs-------~EVsRslaac~G~lLvVDA~qGvqA-QT~anf~l------------------------------------- 172 (650)
T KOG0462|consen 138 FS-------GEVSRSLAACDGALLVVDASQGVQA-QTVANFYL------------------------------------- 172 (650)
T ss_pred cc-------ceehehhhhcCceEEEEEcCcCchH-HHHHHHHH-------------------------------------
Confidence 65 3444456789999999999987432 11111110
Q ss_pred HHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCC--HHHH----HHHhcC--CCeeeeccccc
Q 016864 205 TVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQIT--LEEL----EILDKL--PHYCPVSAHLE 276 (381)
Q Consensus 205 ~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~--~~~l----~~l~~~--~~~v~vSa~~~ 276 (381)
.+.. ...+|.|+||+|+++ ++.+ ..+... ..++.+||++|
T Consensus 173 -----------------------------Afe~---~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G 220 (650)
T KOG0462|consen 173 -----------------------------AFEA---GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTG 220 (650)
T ss_pred -----------------------------HHHc---CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccC
Confidence 0111 247888999999984 3433 233232 36899999999
Q ss_pred ccHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHH-HHhcccEEEEecCCCcc
Q 016864 277 WNLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKRTVEDFCERIHKD-MVKQFKYALVWGSSAKH 346 (381)
Q Consensus 277 ~gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~f~~a~~~~~~~~~ 346 (381)
.++++++++|.+..+- |++ ..++.+.-+++....| +.+...+.++..+.++.
T Consensus 221 ~~v~~lL~AII~rVPp------P~~------------~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrk 273 (650)
T KOG0462|consen 221 LNVEELLEAIIRRVPP------PKG------------IRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRK 273 (650)
T ss_pred ccHHHHHHHHHhhCCC------CCC------------CCCcchHHHhhhhhhhhhcceEEEEEEeeeeeec
Confidence 9999999999986642 221 1124555566555555 44566666776666543
No 393
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.27 E-value=2.9e-11 Score=107.74 Aligned_cols=145 Identities=18% Similarity=0.173 Sum_probs=89.3
Q ss_pred EcCCCCchHHHHHHHhcccccccccccce-eeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCcchhH
Q 016864 71 VGFPSVGKSTLLNKLTGTFSEVASYEFTT-LTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCIL 147 (381)
Q Consensus 71 vG~~naGKSTLln~L~g~~~~~~~~~~tT-~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il 147 (381)
||.+|||||||+++++.... ...+..|. .+...-.+.+++ ..+.++||+|...... .....++.+|+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f-~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~-------l~~~~~~~ad~~i 72 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG-------LRDGYYIQGQCAI 72 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh-------hhHHHhcCCCEEE
Confidence 69999999999999985432 22232222 233333445543 5788999999754321 1112468899999
Q ss_pred HHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCC
Q 016864 148 IVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDAT 227 (381)
Q Consensus 148 ~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t 227 (381)
+|+|.++... .+.+. .++..+.
T Consensus 73 lV~D~t~~~S-~~~i~--------------------------------------------~w~~~i~------------- 94 (200)
T smart00176 73 IMFDVTARVT-YKNVP--------------------------------------------NWHRDLV------------- 94 (200)
T ss_pred EEEECCChHH-HHHHH--------------------------------------------HHHHHHH-------------
Confidence 9999987632 11111 1111110
Q ss_pred hhHHHHHHhcccccccEEEEEecCCcCCH----HHHHHH-hcCCCeeeecccccccHHHHHHHHHHHc
Q 016864 228 ADDLIDVIEGSRIYMPCIYVINKIDQITL----EELEIL-DKLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 228 ~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~----~~l~~l-~~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
+. ....|+++|.||+|+... +.+... .....++.+||+++.|++++++.+...+
T Consensus 95 -----~~----~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 95 -----RV----CENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred -----Hh----CCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 012699999999998532 222111 1223578999999999999999998755
No 394
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=1.8e-11 Score=114.62 Aligned_cols=142 Identities=19% Similarity=0.201 Sum_probs=87.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.....+ .. ......++..+.
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~-~~-~~~~~i~~v~q~ 86 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP-----------TSGEVLIKGEPIKYDKKS-LL-EVRKTVGIVFQN 86 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEECccccch-HH-HHHhheEEEeeC
Confidence 34444444589999999999999999999998877 789999998776311000 00 000111111111
Q ss_pred hc-ccCCcchhHHHH----hcC-CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 137 IS-TARTCNCILIVL----DAI-KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 137 ~~-~~~~~d~il~vv----d~~-~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
.. .+...++.-.+. +.. ......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++
T Consensus 87 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~ 166 (275)
T PRK13639 87 PDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166 (275)
T ss_pred hhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 00 011112211111 111 112233557778888888 56788999999999998776 77788888
Q ss_pred CCCHHHHHHHHH
Q 016864 200 NLDLDTVKAICS 211 (381)
Q Consensus 200 ~l~~~~v~~~l~ 211 (381)
++|......++.
T Consensus 167 gLD~~~~~~l~~ 178 (275)
T PRK13639 167 GLDPMGASQIMK 178 (275)
T ss_pred CCCHHHHHHHHH
Confidence 888876665544
No 395
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.1e-11 Score=113.88 Aligned_cols=118 Identities=19% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..-. ....++..
T Consensus 21 ~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~----~~~i~~~~ 83 (241)
T PRK14250 21 DISVKFE--GGAIYTIVGPSGAGKSTLIKLINRLIDP-----------TEGSILIDGVDIKTIDVIDL----RRKIGMVF 83 (241)
T ss_pred eeeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEhhhcChHHh----hhcEEEEe
Confidence 3444444 4489999999999999999999998777 78999998876532110000 01111111
Q ss_pred hhhcccCCcchhHHHHhc--CCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccce
Q 016864 135 QVISTARTCNCILIVLDA--IKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~--~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~ 191 (381)
+...... .++.-.+.-. ... .....+.+.++.+++. ..+++..||+|+++|..++
T Consensus 84 q~~~~~~-~tv~e~l~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 84 QQPHLFE-GTVKDNIEYGPMLKG-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred cCchhch-hhHHHHHhcchhhcC-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence 1111111 1222111110 011 1234566778888882 4678899999999996654
No 396
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.27 E-value=1.5e-11 Score=126.20 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=35.7
Q ss_pred CceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC
Q 016864 56 EGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG 111 (381)
Q Consensus 56 ~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g 111 (381)
.++++..+.+.+++|+|+||||||||+++|+|...+ ..|.+.+++
T Consensus 22 ~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~ 66 (552)
T TIGR03719 22 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-----------FNGEARPAP 66 (552)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecC
Confidence 344444455589999999999999999999998777 678777653
No 397
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.27 E-value=8.7e-12 Score=115.65 Aligned_cols=124 Identities=22% Similarity=0.184 Sum_probs=69.8
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEE-----eeecCcccccccccCC
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAK-----IQLLDLPGIIEGAKDG 129 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~-----i~l~DtpG~~~~~~~~ 129 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.+ +.-.+...........
T Consensus 24 ~is~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~ 90 (258)
T PRK11701 24 DVSFDLY--PGEVLGIVGESGSGKTTLLNALSARLAP-----------DAGEVHYRMRDGQLRDLYALSEAERRRLLRTE 90 (258)
T ss_pred eeeEEEe--CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCccccccccccCCHHHHHHHhhcc
Confidence 4455554 4489999999999999999999998877 78999998865 3211100000000011
Q ss_pred Ccchhhhhc--ccCCcch---hHHHH---hcCCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccce
Q 016864 130 KGRGRQVIS--TARTCNC---ILIVL---DAIKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 130 ~~~~~~~~~--~~~~~d~---il~vv---d~~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~ 191 (381)
.++..+... ......+ +..-+ ...........+.+.++.+++ ..++.+..||+|+++|..++
T Consensus 91 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 91 WGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred eEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence 111111110 0111111 11111 111111223456677888888 25688999999999996665
No 398
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1.6e-11 Score=117.76 Aligned_cols=149 Identities=15% Similarity=0.086 Sum_probs=89.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+++|++. .+..++|+|+||||||||+++|+|...+. ..+..|.+.++|..+.-.+...........+++..
T Consensus 25 ~vsl~i~--~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~ 95 (330)
T PRK15093 25 RVSMTLT--EGEIRGLVGESGSGKSLIAKAICGVTKDN-------WRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIF 95 (330)
T ss_pred eeEEEEC--CCCEEEEECCCCCCHHHHHHHHHccCCCC-------CCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEe
Confidence 3444444 44899999999999999999999986521 11267999999876532221111000001112222
Q ss_pred hhhc--ccCCcch---hHHHHhcC--------CChHHHHHHHHHHHhcccc-----cccCcCcccceeeccccce-----
Q 016864 135 QVIS--TARTCNC---ILIVLDAI--------KPITHKRLIEKELEGFGIR-----LNKQPPNLTFRKKDKGGIN----- 191 (381)
Q Consensus 135 ~~~~--~~~~~d~---il~vvd~~--------~~~~~~~~i~~~l~~~~~~-----~~~~~~~ls~~~~~r~~~~----- 191 (381)
|... ..+...+ +...+... ......+.+.+.|+.+++. .++++..||+|+++|..++
T Consensus 96 Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~ 175 (330)
T PRK15093 96 QEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred cCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHC
Confidence 2111 1111122 11111110 1122345677888998883 3688999999999998887
Q ss_pred ----eeecccCCCCCHHHHHHHHHH
Q 016864 192 ----FTSTVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 192 ----i~~~~~~~~l~~~~v~~~l~~ 212 (381)
+++|||++++|......+++.
T Consensus 176 ~P~llilDEPts~LD~~~~~~i~~l 200 (330)
T PRK15093 176 QPRLLIADEPTNAMEPTTQAQIFRL 200 (330)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 777899999998766655543
No 399
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.27 E-value=2.8e-11 Score=103.59 Aligned_cols=149 Identities=21% Similarity=0.235 Sum_probs=97.0
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccce-eeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTT-LTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT-~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
+|+++|.+|||||||++.+.+...+ ..+..|. .+...-.+.+++. .+.++|++|..... ......++.+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-------~~~~~~~~~~ 72 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP-ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFD-------SLRDIFYRNS 72 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT-SSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGH-------HHHHHHHTTE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc-ccccccccccccccccccccccccccccccccccccc-------cccccccccc
Confidence 6899999999999999999876533 3343343 5666666777664 57899999864321 1111245889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|+++++.|..++. ..+.+. .++..+
T Consensus 73 ~~~ii~fd~~~~~-S~~~~~--------------------------------------------~~~~~i---------- 97 (162)
T PF00071_consen 73 DAIIIVFDVTDEE-SFENLK--------------------------------------------KWLEEI---------- 97 (162)
T ss_dssp SEEEEEEETTBHH-HHHTHH--------------------------------------------HHHHHH----------
T ss_pred ccccccccccccc-cccccc--------------------------------------------cccccc----------
Confidence 9999999987643 111111 111111
Q ss_pred cCCChhHHHHHHhccc-ccccEEEEEecCCcCC-----HHHHHHHh-c-CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSR-IYMPCIYVINKIDQIT-----LEELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~-~~~p~i~v~NK~Dl~~-----~~~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.... ...|+++|.||.|+.. .++.+.+. + ..+.+.+||+++.|+.+++..+.+.+
T Consensus 98 ------------~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 98 ------------QKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp ------------HHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ------------cccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1100 1269999999999874 22333332 1 25678999999999999998887653
No 400
>PRK12740 elongation factor G; Reviewed
Probab=99.27 E-value=6.3e-12 Score=131.80 Aligned_cols=78 Identities=26% Similarity=0.422 Sum_probs=60.0
Q ss_pred EcCCCCchHHHHHHH---hccccccc---------c------cccceeeeecEEEEEcCEEeeecCcccccccccCCCcc
Q 016864 71 VGFPSVGKSTLLNKL---TGTFSEVA---------S------YEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGR 132 (381)
Q Consensus 71 vG~~naGKSTLln~L---~g~~~~~~---------~------~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~ 132 (381)
+|++|+|||||+++| +|.....+ + .++.|++.....+.|++..+.++||||..+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~------ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFT------ 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHH------
Confidence 699999999999999 44322111 1 35778888888899999999999999986532
Q ss_pred hhhhhcccCCcchhHHHHhcCCC
Q 016864 133 GRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 133 ~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
......+..+|++++|+|++.+
T Consensus 75 -~~~~~~l~~aD~vllvvd~~~~ 96 (668)
T PRK12740 75 -GEVERALRVLDGAVVVVCAVGG 96 (668)
T ss_pred -HHHHHHHHHhCeEEEEEeCCCC
Confidence 3344456889999999999876
No 401
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.26 E-value=1.2e-11 Score=125.21 Aligned_cols=177 Identities=16% Similarity=0.130 Sum_probs=106.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.. +. .....+.++..+.
T Consensus 266 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~-~~--~~~~~~i~~~~q~ 331 (491)
T PRK10982 266 DVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK-----------SAGTITLHGKKINNHN-AN--EAINHGFALVTEE 331 (491)
T ss_pred eeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC-----------CccEEEECCEECCCCC-HH--HHHHCCCEEcCCc
Confidence 34444444589999999999999999999999877 8899999886653110 00 0001111111110
Q ss_pred h---cccCCcch--------hHHHHhc---CCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccceeeecccCC
Q 016864 137 I---STARTCNC--------ILIVLDA---IKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGINFTSTVTNT 199 (381)
Q Consensus 137 ~---~~~~~~d~--------il~vvd~---~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~i~~~~~~~ 199 (381)
. ..+.+.++ +...... .......+.+...++.+++ ..++++..||+|+++|..++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la-------- 403 (491)
T PRK10982 332 RRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG-------- 403 (491)
T ss_pred hhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH--------
Confidence 0 00111111 0000000 0112234456777788777 35889999999999995443
Q ss_pred CCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----HHHhcCCCeeeecccc
Q 016864 200 NLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----EILDKLPHYCPVSAHL 275 (381)
Q Consensus 200 ~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~l~~~~~~v~vSa~~ 275 (381)
.....+++++++|||| +.+|..+.+.+ ..+.....++++++|+
T Consensus 404 ------------~al~~~p~illLDEPt---------------------~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd 450 (491)
T PRK10982 404 ------------RWLLTQPEILMLDEPT---------------------RGIDVGAKFEIYQLIAELAKKDKGIIIISSE 450 (491)
T ss_pred ------------HHHhcCCCEEEEcCCC---------------------cccChhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 3334566777777777 77777765544 2334456788899999
Q ss_pred cccHHHHHHHHHH
Q 016864 276 EWNLDGLLEKIWE 288 (381)
Q Consensus 276 ~~gl~~L~~~i~~ 288 (381)
-..+..++++++.
T Consensus 451 ~~~~~~~~d~v~~ 463 (491)
T PRK10982 451 MPELLGITDRILV 463 (491)
T ss_pred hHHHHhhCCEEEE
Confidence 8777777666544
No 402
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.26 E-value=1.8e-11 Score=124.34 Aligned_cols=177 Identities=13% Similarity=0.189 Sum_probs=102.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...| +..|.+.++|..+.-.. + ........++..|.
T Consensus 278 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p----------~~~G~i~~~g~~~~~~~-~--~~~~~~~i~~v~q~ 344 (500)
T TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG----------KFEGNVFINGKPVDIRN-P--AQAIRAGIAMVPED 344 (500)
T ss_pred cceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC----------CCCeEEEECCEECCCCC-H--HHHHhCCCEEcCcc
Confidence 34444444589999999999999999999998752 15799999887653100 0 00001112222221
Q ss_pred h---cccCCcch---hHHH-HhcC------CChHHHHHHHHHHHhcccc---cccCcCcccceeeccccceeeecccCCC
Q 016864 137 I---STARTCNC---ILIV-LDAI------KPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGINFTSTVTNTN 200 (381)
Q Consensus 137 ~---~~~~~~d~---il~v-vd~~------~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~i~~~~~~~~ 200 (381)
. ......++ +.+. .... ......+.+.+.++.+++. .++++..||+|+++|..++
T Consensus 345 ~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la--------- 415 (500)
T TIGR02633 345 RKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA--------- 415 (500)
T ss_pred hhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH---------
Confidence 1 01121111 1110 0000 1122345677888888882 5788999999999996554
Q ss_pred CCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----HHHhcCCCeeeeccccc
Q 016864 201 LDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----EILDKLPHYCPVSAHLE 276 (381)
Q Consensus 201 l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~l~~~~~~v~vSa~~~ 276 (381)
...+.+++++++|||| +.+|......+ ..+.....+|++++|+-
T Consensus 416 -----------~al~~~p~lllLDEPt---------------------~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 463 (500)
T TIGR02633 416 -----------KMLLTNPRVLILDEPT---------------------RGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463 (500)
T ss_pred -----------HHHhhCCCEEEEcCCC---------------------CCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 2223345566666666 55665544432 23334456788888887
Q ss_pred ccHHHHHHHHH
Q 016864 277 WNLDGLLEKIW 287 (381)
Q Consensus 277 ~gl~~L~~~i~ 287 (381)
..+.+++++++
T Consensus 464 ~~~~~~~d~v~ 474 (500)
T TIGR02633 464 AEVLGLSDRVL 474 (500)
T ss_pred HHHHHhCCEEE
Confidence 77777666554
No 403
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=3.7e-11 Score=112.41 Aligned_cols=141 Identities=17% Similarity=0.168 Sum_probs=87.3
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++.. +..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-.+.... .....++..
T Consensus 20 ~vsl~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~v~ 83 (274)
T PRK13644 20 NINLVIKK--GEYIGIIGKNGSGKSTLALHLNGLLRP-----------QKGKVLVSGIDTGDFSKLQG---IRKLVGIVF 83 (274)
T ss_pred eeEEEEeC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEECCccccHHH---HHhheEEEE
Confidence 44555554 489999999999999999999998877 88999999876532221000 000111111
Q ss_pred hhhc-ccCCcchhHHHH---hc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 135 QVIS-TARTCNCILIVL---DA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 135 ~~~~-~~~~~d~il~vv---d~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
+... .+...++.-.+. .. .......+.+.+.++.+++ ..++.+..||+|+++|..++ +.+|||
T Consensus 84 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 163 (274)
T PRK13644 84 QNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEV 163 (274)
T ss_pred EChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1100 011112211111 10 1112234556777888888 56788999999999998876 677888
Q ss_pred CCCCCHHHHHHHHH
Q 016864 198 NTNLDLDTVKAICS 211 (381)
Q Consensus 198 ~~~l~~~~v~~~l~ 211 (381)
++++|......+++
T Consensus 164 t~gLD~~~~~~l~~ 177 (274)
T PRK13644 164 TSMLDPDSGIAVLE 177 (274)
T ss_pred cccCCHHHHHHHHH
Confidence 88888766555544
No 404
>PRK13409 putative ATPase RIL; Provisional
Probab=99.26 E-value=8e-12 Score=128.44 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=75.4
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 63 SGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 63 ~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..+..++|+|+||+|||||+++|+|...+ ..|.+.++ ..+ |+..+.. .....
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p-----------~~G~I~~~-~~i------~y~~Q~~----------~~~~~ 414 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLKP-----------DEGEVDPE-LKI------SYKPQYI----------KPDYD 414 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEEe-eeE------EEecccc----------cCCCC
Confidence 34589999999999999999999999877 77888764 222 2222110 01112
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHHHHHHHH
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDTVKAIC 210 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~v~~~l 210 (381)
.++.-++............+.+.|+.+++ ..++++..||+|+++|..++ +.+|||++++|......+.
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~ 493 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA 493 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 22222221110011112245677888888 57889999999999997776 5556666666665554443
No 405
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.26 E-value=1.2e-11 Score=114.23 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=65.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE-EeeecCcccccccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA-KIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~-~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.+++. .+.+ +.+... . ..
T Consensus 22 ~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~~~~~i~~------v~q~~~---~-~~ 80 (251)
T PRK09544 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP-----------DEGVIKRNGKLRIGY------VPQKLY---L-DT 80 (251)
T ss_pred eEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCccCEEE------eccccc---c-cc
Confidence 33444444589999999999999999999998877 7888888752 2222 211100 0 00
Q ss_pred hhcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 136 VISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
. +. ..+..++ .. .+....+.+...++.+++ ..++++..||+|+++|..++
T Consensus 81 ~---l~-~~~~~~~-~~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~la 132 (251)
T PRK09544 81 T---LP-LTVNRFL-RL-RPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLA 132 (251)
T ss_pred c---cC-hhHHHHH-hc-cccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHH
Confidence 0 00 0111111 00 111112345667778888 46778999999999996654
No 406
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.26 E-value=1.3e-11 Score=114.25 Aligned_cols=124 Identities=21% Similarity=0.167 Sum_probs=68.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEE-----eeecCcccccccccCC
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAK-----IQLLDLPGIIEGAKDG 129 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~-----i~l~DtpG~~~~~~~~ 129 (381)
+.+|++.. +..++|+|+||||||||+++|+|...+ ..|.+.++|.+ +.-.+..........+
T Consensus 21 ~isl~i~~--Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 87 (253)
T TIGR02323 21 DVSFDLYP--GEVLGIVGESGSGKSTLLGCLAGRLAP-----------DHGTATYIMRSGAELELYQLSEAERRRLMRTE 87 (253)
T ss_pred cceEEEeC--CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEEecccccccccccCCHHHHHHhhhcc
Confidence 44555554 489999999999999999999999877 78999888754 2211100000000011
Q ss_pred Ccchhhhhc--ccCCcch---hHH-HHhcC-CC-hHHHHHHHHHHHhccc---ccccCcCcccceeeccccce
Q 016864 130 KGRGRQVIS--TARTCNC---ILI-VLDAI-KP-ITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 130 ~~~~~~~~~--~~~~~d~---il~-vvd~~-~~-~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~ 191 (381)
.++..+... ......+ +.. +.... .. ....+.+.+.++.+++ ..++.+..||+|+++|..++
T Consensus 88 i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 88 WGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred eEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 111111100 0011111 110 00111 11 1223456677888887 35678899999999996665
No 407
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.26 E-value=1.3e-11 Score=118.22 Aligned_cols=147 Identities=18% Similarity=0.146 Sum_probs=90.2
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+++|++.. +..++|+|+||||||||+++|+|...+.. ...|.+.++|.++.-++...+.......+++..
T Consensus 34 ~vsl~i~~--Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~--------~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~ 103 (330)
T PRK09473 34 DLNFSLRA--GETLGIVGESGSGKSQTAFALMGLLAANG--------RIGGSATFNGREILNLPEKELNKLRAEQISMIF 103 (330)
T ss_pred eeEEEEcC--CCEEEEECCCCchHHHHHHHHHcCCCCCC--------CCCeEEEECCEECCcCCHHHHHHHhcCCEEEEE
Confidence 44555554 48999999999999999999999876510 127999999987643321111100001122222
Q ss_pred hhh--cccCCcch---hHHHHhcC---CChHHHHHHHHHHHhcccc-----cccCcCcccceeeccccce---------e
Q 016864 135 QVI--STARTCNC---ILIVLDAI---KPITHKRLIEKELEGFGIR-----LNKQPPNLTFRKKDKGGIN---------F 192 (381)
Q Consensus 135 ~~~--~~~~~~d~---il~vvd~~---~~~~~~~~i~~~l~~~~~~-----~~~~~~~ls~~~~~r~~~~---------i 192 (381)
|.. ...+...+ +...+... ......+.+.+.|+.+++. ..+++..||+|+++|..++ +
T Consensus 104 Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~ll 183 (330)
T PRK09473 104 QDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLL 183 (330)
T ss_pred cCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 211 11122222 21111111 1123345677788888872 3568999999999998887 7
Q ss_pred eecccCCCCCHHHHHHHHH
Q 016864 193 TSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 193 ~~~~~~~~l~~~~v~~~l~ 211 (381)
++|||++++|......++.
T Consensus 184 ilDEPts~LD~~~~~~i~~ 202 (330)
T PRK09473 184 IADEPTTALDVTVQAQIMT 202 (330)
T ss_pred EEeCCCccCCHHHHHHHHH
Confidence 7789999999877766555
No 408
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=1.9e-11 Score=124.27 Aligned_cols=176 Identities=15% Similarity=0.172 Sum_probs=101.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
++++....+..++|+|+||||||||+++|+|... + ..|.+.++|..+.-.. +. .....+.++..|
T Consensus 280 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-----------~~G~i~~~g~~~~~~~-~~--~~~~~~i~~v~q 345 (506)
T PRK13549 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR-----------WEGEIFIDGKPVKIRN-PQ--QAIAQGIAMVPE 345 (506)
T ss_pred ceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCC-----------CCcEEEECCEECCCCC-HH--HHHHCCCEEeCc
Confidence 3444444458999999999999999999999875 4 6899999887653211 00 000111222222
Q ss_pred hh---cccCCcchhHHH----HhcC------CChHHHHHHHHHHHhcccc---cccCcCcccceeeccccceeeecccCC
Q 016864 136 VI---STARTCNCILIV----LDAI------KPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGINFTSTVTNT 199 (381)
Q Consensus 136 ~~---~~~~~~d~il~v----vd~~------~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~i~~~~~~~ 199 (381)
.. ......++.-.+ .... ......+.+.+.++.+++. .++++..||+|+++|..++
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA-------- 417 (506)
T PRK13549 346 DRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA-------- 417 (506)
T ss_pred chhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH--------
Confidence 11 011222222111 1110 1122345677888998882 5788999999999996654
Q ss_pred CCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----HHHhcCCCeeeecccc
Q 016864 200 NLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----EILDKLPHYCPVSAHL 275 (381)
Q Consensus 200 ~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~l~~~~~~v~vSa~~ 275 (381)
...+.++.++++|||| +-+|..+...+ ..+.+...+|++++|+
T Consensus 418 ------------~al~~~p~lllLDEPt---------------------~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd 464 (506)
T PRK13549 418 ------------KCLLLNPKILILDEPT---------------------RGIDVGAKYEIYKLINQLVQQGVAIIVISSE 464 (506)
T ss_pred ------------HHHhhCCCEEEEcCCC---------------------CCcCHhHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 1112344555555555 45554443332 2223345578888888
Q ss_pred cccHHHHHHHHH
Q 016864 276 EWNLDGLLEKIW 287 (381)
Q Consensus 276 ~~gl~~L~~~i~ 287 (381)
-..+.+++++++
T Consensus 465 ~~~~~~~~d~v~ 476 (506)
T PRK13549 465 LPEVLGLSDRVL 476 (506)
T ss_pred HHHHHHhCCEEE
Confidence 777776666544
No 409
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.1e-11 Score=120.12 Aligned_cols=213 Identities=22% Similarity=0.231 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHhc----------CCC---------------CCCCCCC-----
Q 016864 4 VMQKIKDIEDEMARTQKNKATAHHLGLLKAKLAKLRRELL----------TPT---------------SKGGGGG----- 53 (381)
Q Consensus 4 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~----------~~~---------------~~~~~~~----- 53 (381)
.++..++++.|+.+++.+.+++...+++.+.|.++-.-.. .+. +..+...
T Consensus 301 q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~ 380 (582)
T KOG0062|consen 301 QMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWR 380 (582)
T ss_pred HHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhh
Confidence 4567788999999999888887766666665555421100 000 0011110
Q ss_pred CCCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC-EEeeecCcccccccccCCCcc
Q 016864 54 GGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG-AKIQLLDLPGIIEGAKDGKGR 132 (381)
Q Consensus 54 ~~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g-~~i~l~DtpG~~~~~~~~~~~ 132 (381)
...++.+. -..+|++||+||+||||+++.+.+...+ ..|.+...+ .++...
T Consensus 381 ~~~~~d~e--~~sRi~~vg~ng~gkst~lKi~~~~l~~-----------~rgi~~~~~r~ri~~f--------------- 432 (582)
T KOG0062|consen 381 KQLGLDRE--SDSRISRVGENGDGKSTLLKILKGDLTP-----------TRGIVGRHPRLRIKYF--------------- 432 (582)
T ss_pred hccCCccc--hhhhhheeccCchhHHHHHHHHhccCCc-----------ccceeeecccceecch---------------
Confidence 12222222 3469999999999999999999998776 556554432 222211
Q ss_pred hhhhhcccCCcchhHHHHh---cCCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccceeeecccCCCCCHHHH
Q 016864 133 GRQVISTARTCNCILIVLD---AIKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTV 206 (381)
Q Consensus 133 ~~~~~~~~~~~d~il~vvd---~~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v 206 (381)
.|. .+...|..+-.+| .+.|-...+.++..|+.+|+ ........||+|++.|
T Consensus 433 -~Qh--hvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsr------------------- 490 (582)
T KOG0062|consen 433 -AQH--HVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSR------------------- 490 (582)
T ss_pred -hHh--hhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhH-------------------
Confidence 110 1111223222233 22332355678889999999 3445578899999988
Q ss_pred HHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH-HHHhcCCCeeeecccccccHHHHHHH
Q 016864 207 KAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL-EILDKLPHYCPVSAHLEWNLDGLLEK 285 (381)
Q Consensus 207 ~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l-~~l~~~~~~v~vSa~~~~gl~~L~~~ 285 (381)
.++..+...+.+++++|||| |++|..+.+.+ +++..|.+-|++.+|+..+++.+++.
T Consensus 491 -vafA~~~~~~PhlLVLDEPT---------------------NhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E 548 (582)
T KOG0062|consen 491 -VAFAACTWNNPHLLVLDEPT---------------------NHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKE 548 (582)
T ss_pred -HHHHHHhcCCCcEEEecCCC---------------------ccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCce
Confidence 45556667788899999998 99999988876 67888988888889999999999998
Q ss_pred HHH
Q 016864 286 IWE 288 (381)
Q Consensus 286 i~~ 288 (381)
+|.
T Consensus 549 ~Wv 551 (582)
T KOG0062|consen 549 LWV 551 (582)
T ss_pred eEE
Confidence 876
No 410
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=2.4e-11 Score=114.00 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=92.5
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-...+.+ ....++..
T Consensus 25 ~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~----~~~i~~v~ 87 (279)
T PRK13650 25 DVSFHVK--QGEWLSIIGHNGSGKSTTVRLIDGLLEA-----------ESGQIIIDGDLLTEENVWDI----RHKIGMVF 87 (279)
T ss_pred eeEEEEe--CCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCcHHHH----HhhceEEE
Confidence 3444444 4489999999999999999999999877 89999999977632111111 01112222
Q ss_pred hhh-cccCCcchhHHHH----hc-CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 135 QVI-STARTCNCILIVL----DA-IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 135 ~~~-~~~~~~d~il~vv----d~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
+.. ..+...++.-.+. +. ..+....+.+.+.++.+++ ..++.+..||+|+++|..++ +.+|||
T Consensus 88 q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEP 167 (279)
T PRK13650 88 QNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA 167 (279)
T ss_pred cChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 211 1112222222111 11 1222334567788888898 56888999999999999887 788999
Q ss_pred CCCCCHHHHHHHHHH
Q 016864 198 NTNLDLDTVKAICSE 212 (381)
Q Consensus 198 ~~~l~~~~v~~~l~~ 212 (381)
++++|......+++.
T Consensus 168 t~~LD~~~~~~l~~~ 182 (279)
T PRK13650 168 TSMLDPEGRLELIKT 182 (279)
T ss_pred cccCCHHHHHHHHHH
Confidence 999999877766553
No 411
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.26 E-value=1.4e-11 Score=117.86 Aligned_cols=144 Identities=16% Similarity=0.147 Sum_probs=91.2
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+++|++.. +..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.+...+. .....+++..
T Consensus 33 ~vsl~i~~--Ge~~~IvG~sGsGKSTLl~~l~gl~~p-----------~~G~i~~~g~~l~~~~~~~~~-~~r~~i~~v~ 98 (327)
T PRK11308 33 GVSFTLER--GKTLAVVGESGCGKSTLARLLTMIETP-----------TGGELYYQGQDLLKADPEAQK-LLRQKIQIVF 98 (327)
T ss_pred eeEEEECC--CCEEEEECCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCEEcCcCCHHHHH-HHhCCEEEEE
Confidence 44555544 489999999999999999999998876 789999998765322110000 0011112222
Q ss_pred hhh--cccCCcch---hHHHHhc---CCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccce---------eee
Q 016864 135 QVI--STARTCNC---ILIVLDA---IKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 135 ~~~--~~~~~~d~---il~vvd~---~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
|.. ...+...+ +...+.. .......+.+.+.|+.+++ ..++++..||+|+++|..++ +++
T Consensus 99 Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLil 178 (327)
T PRK11308 99 QNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVA 178 (327)
T ss_pred cCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 211 11121222 1111111 1223345677888999888 35888999999999998887 778
Q ss_pred cccCCCCCHHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~~ 212 (381)
|||++++|......+++.
T Consensus 179 DEPts~LD~~~~~~i~~l 196 (327)
T PRK11308 179 DEPVSALDVSVQAQVLNL 196 (327)
T ss_pred ECCCccCCHHHHHHHHHH
Confidence 899999998776665553
No 412
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.25 E-value=1.9e-11 Score=111.96 Aligned_cols=134 Identities=19% Similarity=0.133 Sum_probs=79.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.. ....+...+.
T Consensus 18 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~i~g~~~~~~~~~------~~~i~~~~q~ 80 (237)
T TIGR00968 18 DVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-----------DSGRIRLNGQDATRVHAR------DRKIGFVFQH 80 (237)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCChh------hcCEEEEecC
Confidence 34444445589999999999999999999998776 789999888765322110 1111111111
Q ss_pred hcccCCcchhHHHH---hc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIVL---DA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~vv---d~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
.......++.-.+. .. .......+.+.+.++.+++ ..++.+..||+|++++..++ +.+|||+++
T Consensus 81 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 11222222222211 11 1112234556777888887 46778899999999996654 444455554
Q ss_pred CCHHHHH
Q 016864 201 LDLDTVK 207 (381)
Q Consensus 201 l~~~~v~ 207 (381)
+|.....
T Consensus 161 LD~~~~~ 167 (237)
T TIGR00968 161 LDAKVRK 167 (237)
T ss_pred CCHHHHH
Confidence 4444433
No 413
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2.4e-11 Score=112.15 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=79.7
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+..+ .+..|.+.++|.++.-.+... .....++..
T Consensus 21 ~is~~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~------~~~~G~i~~~g~~i~~~~~~~----~~~~i~~v~ 88 (250)
T PRK14247 21 GVNLEIP--DNTITALMGPSGSGKSTLLRVFNRLIELYPE------ARVSGEVYLDGQDIFKMDVIE----LRRRVQMVF 88 (250)
T ss_pred cceeEEc--CCCEEEEECCCCCCHHHHHHHHhccCCCCCC------CCCceEEEECCEECCcCCHHH----HhccEEEEe
Confidence 3444444 4489999999999999999999998653000 025799999887653211100 011122222
Q ss_pred hhhcccCCcchhHHH---HhcC---CC-hHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------e
Q 016864 135 QVISTARTCNCILIV---LDAI---KP-ITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------F 192 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~~---~~-~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i 192 (381)
|........++...+ .... .. ....+.+.+.++.+++ ..++.+..||+|+++|..++ +
T Consensus 89 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 168 (250)
T PRK14247 89 QIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVL 168 (250)
T ss_pred ccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 221122223332222 1111 11 2223456777888876 25678899999999996665 4
Q ss_pred eecccCCCCCHHHHH
Q 016864 193 TSTVTNTNLDLDTVK 207 (381)
Q Consensus 193 ~~~~~~~~l~~~~v~ 207 (381)
.+|||++++|.....
T Consensus 169 lLDEP~~~LD~~~~~ 183 (250)
T PRK14247 169 LADEPTANLDPENTA 183 (250)
T ss_pred EEcCCCccCCHHHHH
Confidence 445555555554433
No 414
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.25 E-value=8e-12 Score=104.78 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=93.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
+.++....+..++|.||+|||||||+++++...++ +.|.+.|.|.++.-.+.+.++...+ +..|.
T Consensus 21 ~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp-----------~~G~l~f~Ge~vs~~~pea~Rq~Vs----Y~~Q~ 85 (223)
T COG4619 21 NISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP-----------TSGTLLFEGEDVSTLKPEAYRQQVS----YCAQT 85 (223)
T ss_pred ceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC-----------CCceEEEcCccccccChHHHHHHHH----HHHcC
Confidence 33444444589999999999999999999999888 9999999999988776665543211 11121
Q ss_pred hcccCC--cchhHHHHhcCCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccce---------eeecccCCCCC
Q 016864 137 ISTART--CNCILIVLDAIKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLD 202 (381)
Q Consensus 137 ~~~~~~--~d~il~vvd~~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~ 202 (381)
-.++.+ -|-+++-....+...+.......|..+++ .+.+....||+|++||..+. +.+||+++.+|
T Consensus 86 paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD 165 (223)
T COG4619 86 PALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALD 165 (223)
T ss_pred ccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcC
Confidence 111111 12223222222223355566778888888 78899999999999997775 66688888888
Q ss_pred HHHHH
Q 016864 203 LDTVK 207 (381)
Q Consensus 203 ~~~v~ 207 (381)
+..-+
T Consensus 166 ~~nkr 170 (223)
T COG4619 166 ESNKR 170 (223)
T ss_pred hhhHH
Confidence 76443
No 415
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.25 E-value=2.4e-11 Score=114.22 Aligned_cols=142 Identities=21% Similarity=0.283 Sum_probs=87.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||+|||||+++|+|...+ ..|.+.++|..+..-+ ..... .....++..
T Consensus 24 ~vs~~i~--~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-----------~~G~i~i~g~~~~~~~-~~~~~-~~~~ig~v~ 88 (283)
T PRK13636 24 GININIK--KGEVTAILGGNGAGKSTLFQNLNGILKP-----------SSGRILFDGKPIDYSR-KGLMK-LRESVGMVF 88 (283)
T ss_pred eeEEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CccEEEECCEECCCCc-chHHH-HHhhEEEEe
Confidence 3444444 4589999999999999999999999877 8899999997763210 00000 001111111
Q ss_pred hhhc-ccCCcchhHHHH----hcCCC-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 135 QVIS-TARTCNCILIVL----DAIKP-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 135 ~~~~-~~~~~d~il~vv----d~~~~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
+... .+...++.-.+. ....+ ....+.+...++.+++ ..++++..||+|+++|..++ +.+|||
T Consensus 89 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEP 168 (283)
T PRK13636 89 QDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEP 168 (283)
T ss_pred cCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1100 011112221111 11112 2234567778888888 56888999999999998876 667788
Q ss_pred CCCCCHHHHHHHHH
Q 016864 198 NTNLDLDTVKAICS 211 (381)
Q Consensus 198 ~~~l~~~~v~~~l~ 211 (381)
++++|......+++
T Consensus 169 t~gLD~~~~~~l~~ 182 (283)
T PRK13636 169 TAGLDPMGVSEIMK 182 (283)
T ss_pred ccCCCHHHHHHHHH
Confidence 88888776655443
No 416
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.25 E-value=2.5e-11 Score=112.26 Aligned_cols=142 Identities=16% Similarity=0.130 Sum_probs=77.4
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|......+ .+..|.+.++|.++.-.+. .. .......++..|.
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~i~~~~~-~~-~~~~~~i~~v~q~ 95 (253)
T PRK14242 24 DISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPG------ARVEGEILLDGENIYDPHV-DV-VELRRRVGMVFQK 95 (253)
T ss_pred ceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCC------CCCceEEEECCEEcccccc-CH-HHHhhcEEEEecC
Confidence 33444444489999999999999999999997531000 1267999998876532110 00 0001111121221
Q ss_pred hcccCCcch---hHHHHhcCC--C-hHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------eeec
Q 016864 137 ISTARTCNC---ILIVLDAIK--P-ITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 137 ~~~~~~~d~---il~vvd~~~--~-~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
..... .++ +.+...... . ....+.+...++.+++ ..++++..||+|+++|..++ +.+|
T Consensus 96 ~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllD 174 (253)
T PRK14242 96 PNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD 174 (253)
T ss_pred CCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11111 122 222111111 1 1224456667777776 24677899999999997665 4445
Q ss_pred ccCCCCCHHHHH
Q 016864 196 VTNTNLDLDTVK 207 (381)
Q Consensus 196 ~~~~~l~~~~v~ 207 (381)
||++++|.....
T Consensus 175 EPt~~LD~~~~~ 186 (253)
T PRK14242 175 EPASALDPIATQ 186 (253)
T ss_pred CCcccCCHHHHH
Confidence 555555554443
No 417
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.25 E-value=1.7e-11 Score=111.32 Aligned_cols=108 Identities=26% Similarity=0.378 Sum_probs=87.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+++|++.+ +..+||||.+||||||+-++|+|...| +.|.+.++|.++.-++
T Consensus 31 ~Vsf~i~~--ge~~glVGESG~GKSTlgr~i~~L~~p-----------t~G~i~f~g~~i~~~~---------------- 81 (268)
T COG4608 31 GVSFSIKE--GETLGLVGESGCGKSTLGRLILGLEEP-----------TSGEILFEGKDITKLS---------------- 81 (268)
T ss_pred ceeEEEcC--CCEEEEEecCCCCHHHHHHHHHcCcCC-----------CCceEEEcCcchhhcc----------------
Confidence 56666665 379999999999999999999999988 9999999987644321
Q ss_pred hhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccce---------eeecccCCCCC
Q 016864 135 QVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLD 202 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~ 202 (381)
.....+++.+.|+..|+ .+.++|..+|+|++||.+|+ ++.|||.+.+|
T Consensus 82 --------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLD 141 (268)
T COG4608 82 --------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD 141 (268)
T ss_pred --------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcc
Confidence 23345567788888887 68899999999999999987 77899999999
Q ss_pred HHHHHHHHH
Q 016864 203 LDTVKAICS 211 (381)
Q Consensus 203 ~~~v~~~l~ 211 (381)
...-.++|.
T Consensus 142 vSiqaqIln 150 (268)
T COG4608 142 VSVQAQILN 150 (268)
T ss_pred hhHHHHHHH
Confidence 865555544
No 418
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.25 E-value=3e-11 Score=112.31 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=65.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|....+...+++...
T Consensus 42 ~is~~i~--~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~--------- 99 (264)
T PRK13546 42 DISLKAY--EGDVIGLVGINGSGKSTLSNIIGGSLSP-----------TVGKVDRNGEVSVIAISAGLSGQ--------- 99 (264)
T ss_pred eeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEeEEecccCCCCC---------
Confidence 3444444 4489999999999999999999998877 78888888742111111121110
Q ss_pred hhhcccCCcchhHHH--HhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 135 QVISTARTCNCILIV--LDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~v--vd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
+...+.+.+. .....+....+.+...+..+++ ..++.+..||+|+++|..++
T Consensus 100 -----~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~La 155 (264)
T PRK13546 100 -----LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFS 155 (264)
T ss_pred -----CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH
Confidence 0001111110 1111122222334455666666 56778899999999996554
No 419
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.25 E-value=2.4e-11 Score=123.34 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=72.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.+ +. .....+.++..|.
T Consensus 270 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p-----------~~G~I~~~g~~i~~~~-~~--~~~~~~i~~v~q~ 335 (501)
T PRK10762 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR-----------TSGYVTLDGHEVVTRS-PQ--DGLANGIVYISED 335 (501)
T ss_pred cceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCCCC-HH--HHHHCCCEEecCc
Confidence 34444444589999999999999999999999877 7899999887653211 00 0001112222221
Q ss_pred h---cccCCcchhHHHH-------hc----CCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccce
Q 016864 137 I---STARTCNCILIVL-------DA----IKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 137 ~---~~~~~~d~il~vv-------d~----~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~ 191 (381)
. ......++.-.+. .. .......+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 336 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA 407 (501)
T PRK10762 336 RKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIA 407 (501)
T ss_pred cccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHH
Confidence 1 1112222221111 00 0112234557788888888 36788999999999996654
No 420
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=2.6e-11 Score=113.36 Aligned_cols=142 Identities=23% Similarity=0.256 Sum_probs=90.8
Q ss_pred CceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhh
Q 016864 56 EGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 56 ~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
.++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+. ...++..+
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~~----~~i~~v~q 90 (271)
T PRK13632 26 KNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP-----------QSGEIKIDGITISKENLKEIR----KKIGIIFQ 90 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEecCcCCHHHHh----cceEEEEe
Confidence 344444444589999999999999999999999877 789999998765322111111 11111111
Q ss_pred hh-cccCCcch---hHHHHhc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 136 VI-STARTCNC---ILIVLDA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 136 ~~-~~~~~~d~---il~vvd~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
.. ..+...++ +.+.... .........+.+.++.+++ ..++.+..||+|+++|..++ +.+|||+
T Consensus 91 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~ 170 (271)
T PRK13632 91 NPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDEST 170 (271)
T ss_pred CHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 10 01111222 2211111 1222233456778888888 57888999999999998886 7789999
Q ss_pred CCCCHHHHHHHHHH
Q 016864 199 TNLDLDTVKAICSE 212 (381)
Q Consensus 199 ~~l~~~~v~~~l~~ 212 (381)
+++|......+++.
T Consensus 171 ~gLD~~~~~~l~~~ 184 (271)
T PRK13632 171 SMLDPKGKREIKKI 184 (271)
T ss_pred ccCCHHHHHHHHHH
Confidence 99999877665543
No 421
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.24 E-value=3e-11 Score=112.78 Aligned_cols=128 Identities=18% Similarity=0.161 Sum_probs=70.2
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+.....+. ...|.+.++|.++.-.+...+.. ..+...
T Consensus 19 ~vsl~i~--~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~---~~~G~i~~~g~~~~~~~~~~~~~----~~~~v~ 89 (272)
T PRK13547 19 DLSLRIE--PGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA---RVTGDVTLNGEPLAAIDAPRLAR----LRAVLP 89 (272)
T ss_pred cceEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCCCccccccc---CCceEEEECCEEcccCCHHHHHh----hcEEec
Confidence 3444444 44899999999999999999999987651000000 01789999887654222111100 001111
Q ss_pred hhhcccCCcchhHHHHhc---C------CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 135 QVISTARTCNCILIVLDA---I------KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~---~------~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
+....+...++.-.+.-. . ......+.+...++.+++ ..++++..||+|+++|..++
T Consensus 90 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 90 QAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred ccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHH
Confidence 110001111221111100 0 012233456778888888 46788999999999995543
No 422
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.24 E-value=2.1e-11 Score=121.36 Aligned_cols=130 Identities=17% Similarity=0.141 Sum_probs=83.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|....+...+++...
T Consensus 42 nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P-----------~sGeI~I~G~~~~i~~~~~l~~~----------- 99 (549)
T PRK13545 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-----------NKGTVDIKGSAALIAISSGLNGQ----------- 99 (549)
T ss_pred eeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEeeeEEeccccCCC-----------
Confidence 33444444589999999999999999999999877 78999998864221111111110
Q ss_pred hcccCCcchhHHHH--hcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCH
Q 016864 137 ISTARTCNCILIVL--DAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDL 203 (381)
Q Consensus 137 ~~~~~~~d~il~vv--d~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~ 203 (381)
+...+.+.+.. .........+.+...++.+++ ..++++..||+|+++|..++ +.+|||++++|.
T Consensus 100 ---lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 100 ---LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred ---CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 01111111110 111112223445667778888 56788999999999998876 777889888888
Q ss_pred HHHHHHHH
Q 016864 204 DTVKAICS 211 (381)
Q Consensus 204 ~~v~~~l~ 211 (381)
.....++.
T Consensus 177 ~sr~~Lle 184 (549)
T PRK13545 177 TFTKKCLD 184 (549)
T ss_pred HHHHHHHH
Confidence 76655544
No 423
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=2.6e-11 Score=110.90 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=80.4
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-.+- .....+...+..
T Consensus 18 is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p-----------~~G~v~i~g~~~~~~~~------~~~~i~~~~q~~ 80 (235)
T cd03299 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP-----------DSGKILLNGKDITNLPP------EKRDISYVPQNY 80 (235)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcCcCCh------hHcCEEEEeecC
Confidence 3444444589999999999999999999998877 88999998865532110 011111112211
Q ss_pred cccCCcchhHHHH----hc-CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 138 STARTCNCILIVL----DA-IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 138 ~~~~~~d~il~vv----d~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
..+...++.-.+. .. .......+.+.+.++.+++ ...+++..||+|+++|..++ +.+|||++++
T Consensus 81 ~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gL 160 (235)
T cd03299 81 ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSAL 160 (235)
T ss_pred ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccC
Confidence 1222223321111 11 1112233456677888888 57788899999999997665 4445555555
Q ss_pred CHHHHHH
Q 016864 202 DLDTVKA 208 (381)
Q Consensus 202 ~~~~v~~ 208 (381)
|......
T Consensus 161 D~~~~~~ 167 (235)
T cd03299 161 DVRTKEK 167 (235)
T ss_pred CHHHHHH
Confidence 5544443
No 424
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=2.5e-11 Score=115.82 Aligned_cols=144 Identities=17% Similarity=0.100 Sum_probs=88.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeec-------Cc------cccc
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLL-------DL------PGII 123 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~-------Dt------pG~~ 123 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-. .. ...
T Consensus 44 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-----------~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~- 111 (320)
T PRK13631 44 NISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS-----------KYGTIQVGDIYIGDKKNNHELITNPYSKKIKNF- 111 (320)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCEEcccccccccccccccccccchH-
Confidence 34444444589999999999999999999999877 889999988765210 00 000
Q ss_pred ccccCCCcchhhhhc-ccCCcchhHHHH----hcC-CChHHHHHHHHHHHhcccc---cccCcCcccceeeccccce---
Q 016864 124 EGAKDGKGRGRQVIS-TARTCNCILIVL----DAI-KPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGIN--- 191 (381)
Q Consensus 124 ~~~~~~~~~~~~~~~-~~~~~d~il~vv----d~~-~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~--- 191 (381)
.......+...|... .+-..++.-.+. ... ........+.+.++.+++. ..+.+..||+|+++|..++
T Consensus 112 ~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL 191 (320)
T PRK13631 112 KELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGIL 191 (320)
T ss_pred HHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 000111122122110 011112211111 111 1122334667788888882 5778899999999998886
Q ss_pred ------eeecccCCCCCHHHHHHHHHH
Q 016864 192 ------FTSTVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 192 ------i~~~~~~~~l~~~~v~~~l~~ 212 (381)
+.+|||++++|......+++.
T Consensus 192 ~~~p~iLLLDEPtsgLD~~~~~~l~~~ 218 (320)
T PRK13631 192 AIQPEILIFDEPTAGLDPKGEHEMMQL 218 (320)
T ss_pred HcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 777899999988777665543
No 425
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=2e-11 Score=115.00 Aligned_cols=144 Identities=15% Similarity=0.139 Sum_probs=87.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
++++++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.....-........++..
T Consensus 25 ~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~ 91 (286)
T PRK13646 25 DVNTEFE--QGKYYAIVGQTGSGKSTLIQNINALLKP-----------TTGTVTVDDITITHKTKDKYIRPVRKRIGMVF 91 (286)
T ss_pred eeEEEEc--CCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchHHHHHhheEEEe
Confidence 4444544 4589999999999999999999999877 88999999876632100000000011112222
Q ss_pred hhhc-ccCCcchhHHHH----hc-CCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccce---------eeecc
Q 016864 135 QVIS-TARTCNCILIVL----DA-IKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 135 ~~~~-~~~~~d~il~vv----d~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
|... .+-..++.-.+. .. .......+.+.+.++.+++. .++.+..||+|+++|..++ +.+||
T Consensus 92 q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDE 171 (286)
T PRK13646 92 QFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171 (286)
T ss_pred cChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 2110 011112211111 11 11122345667788888883 4578999999999998876 67788
Q ss_pred cCCCCCHHHHHHHHH
Q 016864 197 TNTNLDLDTVKAICS 211 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~ 211 (381)
|++++|......++.
T Consensus 172 Pt~~LD~~~~~~l~~ 186 (286)
T PRK13646 172 PTAGLDPQSKRQVMR 186 (286)
T ss_pred CcccCCHHHHHHHHH
Confidence 888888876665544
No 426
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2e-11 Score=126.81 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=90.7
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEee-----ecCccccc-----c
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQ-----LLDLPGII-----E 124 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~-----l~DtpG~~-----~ 124 (381)
+.+|++. .+..+||+|+||||||||+++|+|...+ ..|.+.++|..+. +++..... .
T Consensus 34 ~is~~v~--~Ge~~~lvG~nGsGKSTLl~~l~Gll~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 100 (623)
T PRK10261 34 NLSFSLQ--RGETLAIVGESGSGKSVTALALMRLLEQ-----------AGGLVQCDKMLLRRRSRQVIELSEQSAAQMRH 100 (623)
T ss_pred eeEEEEC--CCCEEEEECCCCChHHHHHHHHHcCCCC-----------CCeEEEECCEEeccccccccccccCCHHHHHH
Confidence 4455554 4489999999999999999999999877 7888888776441 11110000 0
Q ss_pred cccCCCcchhhhh--cccCCcchhHHH---Hh---cCCChHHHHHHHHHHHhcccc-----cccCcCcccceeeccccce
Q 016864 125 GAKDGKGRGRQVI--STARTCNCILIV---LD---AIKPITHKRLIEKELEGFGIR-----LNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 125 ~~~~~~~~~~~~~--~~~~~~d~il~v---vd---~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~ls~~~~~r~~~~ 191 (381)
.....+++..|.. ......++.-.+ .. ........+.+.+.|+.+++. +++++..||+|+++|..++
T Consensus 101 ~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA 180 (623)
T PRK10261 101 VRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIA 180 (623)
T ss_pred HhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHH
Confidence 0001223333321 112222332222 11 111122345677888999982 5788999999999998887
Q ss_pred ---------eeecccCCCCCHHHHHHHHH
Q 016864 192 ---------FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 192 ---------i~~~~~~~~l~~~~v~~~l~ 211 (381)
+.+|||++++|......++.
T Consensus 181 ~AL~~~P~lLllDEPt~~LD~~~~~~l~~ 209 (623)
T PRK10261 181 MALSCRPAVLIADEPTTALDVTIQAQILQ 209 (623)
T ss_pred HHHhCCCCEEEEeCCCCccCHHHHHHHHH
Confidence 77899999999987655544
No 427
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.23 E-value=1.9e-11 Score=127.09 Aligned_cols=143 Identities=16% Similarity=0.099 Sum_probs=89.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.+.... ......+++..|.
T Consensus 342 ~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~-~~~~~~i~~v~Q~ 409 (623)
T PRK10261 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES-----------QGGEIIFNGQRIDTLSPGKL-QALRRDIQFIFQD 409 (623)
T ss_pred eeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCcEEEECCEECCcCCHHHH-HHhcCCeEEEecC
Confidence 44444444589999999999999999999999877 78999999876532210000 0001112222222
Q ss_pred h--cccCCcchhHHHHh---cC---CChHHHHHHHHHHHhccc---ccccCcCcccceeeccccce---------eeecc
Q 016864 137 I--STARTCNCILIVLD---AI---KPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 137 ~--~~~~~~d~il~vvd---~~---~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
. ...+..++.-.+.. .. ......+.+.+.|+.+++ ..++++..||+|+++|..++ +.+||
T Consensus 410 ~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDE 489 (623)
T PRK10261 410 PYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADE 489 (623)
T ss_pred chhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 12222333222211 11 112334567788999998 36788999999999998876 66678
Q ss_pred cCCCCCHHHHHHHHH
Q 016864 197 TNTNLDLDTVKAICS 211 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~ 211 (381)
|++++|......+++
T Consensus 490 Pts~LD~~~~~~i~~ 504 (623)
T PRK10261 490 AVSALDVSIRGQIIN 504 (623)
T ss_pred CcccCCHHHHHHHHH
Confidence 888888776655544
No 428
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=3.6e-11 Score=112.81 Aligned_cols=141 Identities=19% Similarity=0.176 Sum_probs=91.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|..+.-.+... .....++..+.
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-----------~~G~i~~~g~~i~~~~~~~----~~~~i~~~~q~ 89 (279)
T PRK13635 25 DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP-----------EAGTITVGGMVLSEETVWD----VRRQVGMVFQN 89 (279)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCcHHH----HhhheEEEEeC
Confidence 33444444589999999999999999999999877 8999999997653211100 01112222221
Q ss_pred h-cccCCcchhHHHH---h-c-CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 137 I-STARTCNCILIVL---D-A-IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 137 ~-~~~~~~d~il~vv---d-~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
. ..+...++.-.+. . . ..+....+.+...+..+++ ...+.+..||+|+++|..++ +.+|||++
T Consensus 90 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 169 (279)
T PRK13635 90 PDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATS 169 (279)
T ss_pred HHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 1 0111222222211 1 1 1122234557778888888 67788999999999998886 88899999
Q ss_pred CCCHHHHHHHHHH
Q 016864 200 NLDLDTVKAICSE 212 (381)
Q Consensus 200 ~l~~~~v~~~l~~ 212 (381)
++|......+++.
T Consensus 170 gLD~~~~~~l~~~ 182 (279)
T PRK13635 170 MLDPRGRREVLET 182 (279)
T ss_pred cCCHHHHHHHHHH
Confidence 9999877665543
No 429
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.23 E-value=2.7e-11 Score=123.81 Aligned_cols=149 Identities=17% Similarity=0.158 Sum_probs=90.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+.. ..+..|.+.++|..+.-.+............++..
T Consensus 27 ~isl~i~--~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~ 98 (529)
T PRK15134 27 DVSLQIE--AGETLALVGESGSGKSVTALSILRLLPSPP------VVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIF 98 (529)
T ss_pred ceEEEEe--CCCEEEEECCCCCcHHHHHHHHhcCCCCCc------CCccceEEEECCEecccCCHHHHHHHhcCceEEEe
Confidence 4445544 448999999999999999999999875410 01257999999887643322111000001122222
Q ss_pred hhhc--ccCCcch---hHHHHhc---CCChHHHHHHHHHHHhcccc-----cccCcCcccceeeccccce---------e
Q 016864 135 QVIS--TARTCNC---ILIVLDA---IKPITHKRLIEKELEGFGIR-----LNKQPPNLTFRKKDKGGIN---------F 192 (381)
Q Consensus 135 ~~~~--~~~~~d~---il~vvd~---~~~~~~~~~i~~~l~~~~~~-----~~~~~~~ls~~~~~r~~~~---------i 192 (381)
|... ......+ +...... .......+.+.+.++.+++. .++++..||+|+++|..++ +
T Consensus 99 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~ll 178 (529)
T PRK15134 99 QEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELL 178 (529)
T ss_pred cCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 2110 1111111 1111111 11123346677888888882 4788999999999998887 7
Q ss_pred eecccCCCCCHHHHHHHHH
Q 016864 193 TSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 193 ~~~~~~~~l~~~~v~~~l~ 211 (381)
.+|||++++|......+++
T Consensus 179 llDEPt~~LD~~~~~~l~~ 197 (529)
T PRK15134 179 IADEPTTALDVSVQAQILQ 197 (529)
T ss_pred EEcCCCCccCHHHHHHHHH
Confidence 7899999999987766654
No 430
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.23 E-value=4.3e-11 Score=111.57 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=79.0
Q ss_pred CceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhh
Q 016864 56 EGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 56 ~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
.++++....+..++|+|+||||||||+++|+|...+... .|..|.+.++|.++.-.+. .... .....++..+
T Consensus 36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~I~~~g~~i~~~~~-~~~~-~~~~i~~v~q 107 (267)
T PRK14235 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDG------CRVTGKITLDGEDIYDPRL-DVVE-LRARVGMVFQ 107 (267)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccC------CCCceEEEECCEECccccc-chHH-HhhceEEEec
Confidence 344444445589999999999999999999998643000 1267999998876532110 0000 0011111111
Q ss_pred hhcccCCcchhHHH---HhcCC---C-hHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------ee
Q 016864 136 VISTARTCNCILIV---LDAIK---P-ITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 136 ~~~~~~~~d~il~v---vd~~~---~-~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
....+.. .+.-.+ ..... . ....+.+...++.+++ ..++++..||+|+++|..++ +.
T Consensus 108 ~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 186 (267)
T PRK14235 108 KPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVIL 186 (267)
T ss_pred CCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1111111 221111 11000 1 1223456677777777 24567899999999997665 45
Q ss_pred ecccCCCCCHHHHHH
Q 016864 194 STVTNTNLDLDTVKA 208 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~ 208 (381)
+|||++++|......
T Consensus 187 LDEPt~~LD~~~~~~ 201 (267)
T PRK14235 187 MDEPCSALDPIATAK 201 (267)
T ss_pred EeCCCcCCCHHHHHH
Confidence 555655555544433
No 431
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=7.9e-11 Score=101.40 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=104.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++... ..-+++|||||||||||..++..... ..|.+.++|..+.-+++.-+.
T Consensus 19 ~isl~i~~g--~iTs~IGPNGAGKSTLLS~~sRL~~~-----------d~G~i~i~g~~~~~~~s~~LA----------- 74 (252)
T COG4604 19 DVSLDIPKG--GITSIIGPNGAGKSTLLSMMSRLLKK-----------DSGEITIDGLELTSTPSKELA----------- 74 (252)
T ss_pred cceeeecCC--ceeEEECCCCccHHHHHHHHHHhccc-----------cCceEEEeeeecccCChHHHH-----------
Confidence 456666663 59999999999999999999988887 899999998877654433322
Q ss_pred hhhcccCCcc-------hhHHHHhc----CC--C-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce-------
Q 016864 135 QVISTARTCN-------CILIVLDA----IK--P-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN------- 191 (381)
Q Consensus 135 ~~~~~~~~~d-------~il~vvd~----~~--~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~------- 191 (381)
+.++.+++.. +--+|--+ +. + .++...+.+.++.+.+ ..+++...||+|++||.-++
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdT 154 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDT 154 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccC
Confidence 2222222222 21222111 11 1 4567778888888888 56778899999999998887
Q ss_pred --eeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCC
Q 016864 192 --FTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQIT 255 (381)
Q Consensus 192 --i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~ 255 (381)
+.+|||+.++|..+-..+.+-+. .+. ..+.+.+++|++.+..++
T Consensus 155 dyvlLDEPLNNLDmkHsv~iMk~Lr-------------------rla-~el~KtiviVlHDINfAS 200 (252)
T COG4604 155 DYVLLDEPLNNLDMKHSVQIMKILR-------------------RLA-DELGKTIVVVLHDINFAS 200 (252)
T ss_pred cEEEecCcccccchHHHHHHHHHHH-------------------HHH-HHhCCeEEEEEecccHHH
Confidence 56689999999876554443221 111 112368888888877543
No 432
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=2.9e-11 Score=111.76 Aligned_cols=143 Identities=20% Similarity=0.169 Sum_probs=78.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+.. ..+..|.+.++|.++.-.+... . ......++..+.
T Consensus 22 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~-~-~~~~~i~~~~q~ 93 (253)
T PRK14267 22 GVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE------EARVEGEVRLFGRNIYSPDVDP-I-EVRREVGMVFQY 93 (253)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCccc------CCCCceEEEECCEEccccccCh-H-HHhhceeEEecC
Confidence 3344444448999999999999999999999865400 0124799999887653111000 0 001111222222
Q ss_pred hcccCCcchhHHHH---hcCC---C-hHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVL---DAIK---P-ITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vv---d~~~---~-~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
...+...++.-.+. .... + ......+.+.++.+++ ..++++..||+|+++|..++ +.+
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 173 (253)
T PRK14267 94 PNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLM 173 (253)
T ss_pred CccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11222223322221 1111 1 2223445666777765 25678899999999996665 444
Q ss_pred cccCCCCCHHHHH
Q 016864 195 TVTNTNLDLDTVK 207 (381)
Q Consensus 195 ~~~~~~l~~~~v~ 207 (381)
|||++++|.....
T Consensus 174 DEP~~~LD~~~~~ 186 (253)
T PRK14267 174 DEPTANIDPVGTA 186 (253)
T ss_pred cCCCccCCHHHHH
Confidence 5555555554433
No 433
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.23 E-value=1.1e-11 Score=109.94 Aligned_cols=131 Identities=21% Similarity=0.237 Sum_probs=88.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccc----cCCC
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGA----KDGK 130 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~----~~~~ 130 (381)
++++++.+ +...+++|++|+|||||++.|.|...| ..|.+.+.|.++. ++.+.. ....
T Consensus 26 ~v~l~V~~--Gei~~iiGgSGsGKStlLr~I~Gll~P-----------~~GeI~i~G~~i~-----~ls~~~~~~ir~r~ 87 (263)
T COG1127 26 GVDLDVPR--GEILAILGGSGSGKSTLLRLILGLLRP-----------DKGEILIDGEDIP-----QLSEEELYEIRKRM 87 (263)
T ss_pred CceeeecC--CcEEEEECCCCcCHHHHHHHHhccCCC-----------CCCeEEEcCcchh-----ccCHHHHHHHHhhe
Confidence 55666665 379999999999999999999999999 9999999986643 332211 1223
Q ss_pred cchhhhhcccCCcchhHHHH----hcC-CCh-HHHHHHHHHHHhccc--c-cccCcCcccceeeccccce---------e
Q 016864 131 GRGRQVISTARTCNCILIVL----DAI-KPI-THKRLIEKELEGFGI--R-LNKQPPNLTFRKKDKGGIN---------F 192 (381)
Q Consensus 131 ~~~~~~~~~~~~~d~il~vv----d~~-~~~-~~~~~i~~~l~~~~~--~-~~~~~~~ls~~~~~r~~~~---------i 192 (381)
+...|.-+++...++...|. ... -|. .-.+.+..-|+..|+ . .++.|..||+|++.|.+++ +
T Consensus 88 GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 88 GVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred eEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEE
Confidence 44445444445555443332 111 122 234456677788888 3 7899999999999997776 4
Q ss_pred eecccCCCCCH
Q 016864 193 TSTVTNTNLDL 203 (381)
Q Consensus 193 ~~~~~~~~l~~ 203 (381)
..|||++++|+
T Consensus 168 ~~DEPtsGLDP 178 (263)
T COG1127 168 FLDEPTSGLDP 178 (263)
T ss_pred EecCCCCCCCc
Confidence 44566666555
No 434
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.23 E-value=4.3e-11 Score=108.74 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=88.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..- .....++..
T Consensus 25 ~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~ 87 (225)
T PRK10247 25 NISFSLR--AGEFKLITGPSGCGKSTLLKIVASLISP-----------TSGTLLFEGEDISTLKPEI----YRQQVSYCA 87 (225)
T ss_pred ccEEEEc--CCCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCeEEECCEEcCcCCHHH----HHhccEEEe
Confidence 4455554 4489999999999999999999998777 7899999887654221100 001111111
Q ss_pred hhhcccCCcchhH---HHHhcCCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccce---------eeecccCC
Q 016864 135 QVISTARTCNCIL---IVLDAIKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 135 ~~~~~~~~~d~il---~vvd~~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
+...... .++.- +...........+.+.+.++.+++ ...+++..||+|+++|..++ +.+|||++
T Consensus 88 q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (225)
T PRK10247 88 QTPTLFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 (225)
T ss_pred ccccccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 1111111 12221 111111111123456677888888 25788999999999998886 77899999
Q ss_pred CCCHHHHHHHHH
Q 016864 200 NLDLDTVKAICS 211 (381)
Q Consensus 200 ~l~~~~v~~~l~ 211 (381)
++|......+..
T Consensus 167 ~LD~~~~~~l~~ 178 (225)
T PRK10247 167 ALDESNKHNVNE 178 (225)
T ss_pred cCCHHHHHHHHH
Confidence 999887665544
No 435
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.23 E-value=3.5e-11 Score=111.60 Aligned_cols=127 Identities=19% Similarity=0.173 Sum_probs=69.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+... .|..|.+.++|.++.-.+. .. .......+...+.
T Consensus 22 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~------~~~~G~I~~~g~~~~~~~~-~~-~~~~~~i~~~~q~ 93 (258)
T PRK14241 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPG------ARVEGEVLLDGEDLYGPGV-DP-VAVRRTIGMVFQR 93 (258)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccC------CCcceEEEECCEecccccc-Ch-HHHhcceEEEccc
Confidence 33444444589999999999999999999998643000 0258999998876531110 00 0001111222222
Q ss_pred hcccCCcchhHHHH---hcCC--C-hHHHHHHHHHHHhccc------ccccCcCcccceeeccccce
Q 016864 137 ISTARTCNCILIVL---DAIK--P-ITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 137 ~~~~~~~d~il~vv---d~~~--~-~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~ 191 (381)
.......++.-.+. .... . ....+.+.+.++.+++ ..++.+..||+|+++|..++
T Consensus 94 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 94 PNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 11222223322211 1111 1 2223345666777765 35677899999999996665
No 436
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.22 E-value=6.8e-11 Score=104.98 Aligned_cols=82 Identities=18% Similarity=0.164 Sum_probs=51.3
Q ss_pred cEEEEEcCCCCchHHHHH-HHhcccc----ccccccccee--eeec-E-------EEEEcC--EEeeecCcccccccccC
Q 016864 66 SRVGLVGFPSVGKSTLLN-KLTGTFS----EVASYEFTTL--TCIP-G-------VITYRG--AKIQLLDLPGIIEGAKD 128 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln-~L~g~~~----~~~~~~~tT~--~~~~-g-------~i~~~g--~~i~l~DtpG~~~~~~~ 128 (381)
.+|+++|.+|||||||+. .+.+... ....+..|+- +... . .+.++| ..+.++||||.....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~~-- 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDKD-- 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhhh--
Confidence 589999999999999995 5554321 1223333331 2111 1 113344 467899999974311
Q ss_pred CCcchhhhhcccCCcchhHHHHhcCCCh
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAIKPI 156 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~~~~ 156 (381)
.. ..++++|++++|.|..++.
T Consensus 81 -----~~--~~~~~ad~iilv~d~t~~~ 101 (195)
T cd01873 81 -----RR--FAYGRSDVVLLCFSIASPN 101 (195)
T ss_pred -----hc--ccCCCCCEEEEEEECCChh
Confidence 11 1468999999999998763
No 437
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.22 E-value=2.4e-11 Score=108.54 Aligned_cols=80 Identities=25% Similarity=0.347 Sum_probs=56.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc----CEEeeecCcccccccccCCCcchhhhhcccC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR----GAKIQLLDLPGIIEGAKDGKGRGRQVISTAR 141 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~----g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 141 (381)
+.|.|+|++|||||||++.|++.... ..+ ++..+..+.+... +..+.++||||..... ......++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~-~t~--~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~-------~~~~~~~~ 70 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYR-STV--TSIEPNVATFILNSEGKGKKFRLVDVPGHPKLR-------DKLLETLK 70 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCC-Ccc--CcEeecceEEEeecCCCCceEEEEECCCCHHHH-------HHHHHHHh
Confidence 36899999999999999999876422 222 2334455554442 6789999999976532 23334557
Q ss_pred Cc-chhHHHHhcCCC
Q 016864 142 TC-NCILIVLDAIKP 155 (381)
Q Consensus 142 ~~-d~il~vvd~~~~ 155 (381)
.+ +.+++|+|+...
T Consensus 71 ~~~~~vV~VvD~~~~ 85 (203)
T cd04105 71 NSAKGIVFVVDSATF 85 (203)
T ss_pred ccCCEEEEEEECccc
Confidence 77 999999999875
No 438
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.22 E-value=2.9e-11 Score=109.70 Aligned_cols=126 Identities=17% Similarity=0.213 Sum_probs=75.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeee-cCcccccccccCCCcchhhhhcccCCc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQL-LDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l-~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.- .-..++..+.+. +......
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~i~~v~q~~~--------~~~~~~~ 66 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIPP-----------AKGTVKVAGASPGKGWRHIGYVPQRHE--------FAWDFPI 66 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCccchHhhCcEEEeccccc--------ccCCCCc
Confidence 389999999999999999999998877 78999998865310 000122211100 0000001
Q ss_pred chhHHHHhc---------CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCH
Q 016864 144 NCILIVLDA---------IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDL 203 (381)
Q Consensus 144 d~il~vvd~---------~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~ 203 (381)
++...+... .......+.+...++.+++ ..++++..||+|+++|..++ +.+|||++++|.
T Consensus 67 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 67 SVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 121111110 0112334567778888888 46778899999999997665 555566666665
Q ss_pred HHHHHH
Q 016864 204 DTVKAI 209 (381)
Q Consensus 204 ~~v~~~ 209 (381)
.....+
T Consensus 147 ~~~~~l 152 (223)
T TIGR03771 147 PTQELL 152 (223)
T ss_pred HHHHHH
Confidence 544443
No 439
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=7.2e-12 Score=123.17 Aligned_cols=281 Identities=17% Similarity=0.261 Sum_probs=166.9
Q ss_pred CcEEEEEcCCCCchHHHHHHH---hcccccccc---------------cccceeeeecEEEEEcCEEeeecCcccccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKL---TGTFSEVAS---------------YEFTTLTCIPGVITYRGAKIQLLDLPGIIEGA 126 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L---~g~~~~~~~---------------~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~ 126 (381)
...|+++-+--|||||+-+.+ +|....+.. ..++|+......+.|....+.++||||.+++.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 368999999999999999988 344332221 35778877778889999999999999998864
Q ss_pred cCCCcchhhhhcccCCcchhHHHHhcCCC-hHHHHHHHHHHHhcccccccCcCcccceeeccccceee------------
Q 016864 127 KDGKGRGRQVISTARTCNCILIVLDAIKP-ITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFT------------ 193 (381)
Q Consensus 127 ~~~~~~~~~~~~~~~~~d~il~vvd~~~~-~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~------------ 193 (381)
.+...+++..|..++|+|+..+ ..+...+...+.+++. |...++++.+|.+....
T Consensus 119 -------~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~v-----P~i~FiNKmDRmGa~~~~~l~~i~~kl~~ 186 (721)
T KOG0465|consen 119 -------FEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNV-----PRICFINKMDRMGASPFRTLNQIRTKLNH 186 (721)
T ss_pred -------EEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCC-----CeEEEEehhhhcCCChHHHHHHHHhhcCC
Confidence 4555567888999999998877 5677778888887776 55555666666554400
Q ss_pred ----ecccCC-CCCHHHHHHHHHHhcc-----cCCccccccCCChhHHHHHHhcccccccEEEEEecCCc----------
Q 016864 194 ----STVTNT-NLDLDTVKAICSEYRI-----HNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQ---------- 253 (381)
Q Consensus 194 ----~~~~~~-~l~~~~v~~~l~~~~~-----~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl---------- 253 (381)
...|.. +....-+..+++.-.+ ....+.. ++. ++++.+.....+. .+|-.+-..|.
T Consensus 187 ~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~-~eI-P~~l~~~~~e~R~--~LIE~lad~DE~l~e~fLee~ 262 (721)
T KOG0465|consen 187 KPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRK-DEI-PEDLEELAEEKRQ--ALIETLADVDETLAEMFLEEE 262 (721)
T ss_pred chheeEccccccccchhHHhhhhceEEEEcCCCCceeEe-ccC-CHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHhccC
Confidence 011110 0000111111111000 0000000 111 1222222211110 00000011110
Q ss_pred -CCHHHHHH-H------hcCCCeeeecccccccHHHHHHHHHHHcCCcEEEeCC-CCCCCCCCCcEEec--CCCCCHHHH
Q 016864 254 -ITLEELEI-L------DKLPHYCPVSAHLEWNLDGLLEKIWEYLNLTRIYTKP-KGMNPDYEDPVILS--SKKRTVEDF 322 (381)
Q Consensus 254 -~~~~~l~~-l------~~~~~~v~vSa~~~~gl~~L~~~i~~~l~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~ 322 (381)
++.+.+.. + ..|.|+++-||..+.|++-|++++.+.|+.+...... -....+.+.++.+. +++..+..+
T Consensus 263 ~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~L 342 (721)
T KOG0465|consen 263 EPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVAL 342 (721)
T ss_pred CCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeee
Confidence 12222221 1 3477889999999999999999999999865432221 11122333345552 554577889
Q ss_pred HHHHHHHHHhcccEEEEecCCCccCCe----------eeCCCcccccCC
Q 016864 323 CERIHKDMVKQFKYALVWGSSAKHKPQ----------RVGKEHELEDEX 361 (381)
Q Consensus 323 ~~~i~~~~~~~f~~a~~~~~~~~~~~~----------rvg~~~~l~~~d 361 (381)
||++..+=.+.+.|.|+|.+..+.++. |++..++++.+|
T Consensus 343 AFKle~g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~ 391 (721)
T KOG0465|consen 343 AFKLEEGRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHAND 391 (721)
T ss_pred EEEeeecCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccc
Confidence 999998833899999999999776653 777777766654
No 440
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.22 E-value=5.7e-11 Score=103.41 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=84.7
Q ss_pred eEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhc
Q 016864 59 DVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVIS 138 (381)
Q Consensus 59 ~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~ 138 (381)
++....+..++|+||||||||||+++|+|...| ..|.+.++|.+..-+ ...+- .....
T Consensus 21 sl~~~pGev~ailGPNGAGKSTlLk~LsGel~p-----------~~G~v~~~g~~l~~~---~~~~l--------A~~ra 78 (259)
T COG4559 21 SLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-----------DSGEVTLNGVPLNSW---PPEEL--------ARHRA 78 (259)
T ss_pred ceeccCCcEEEEECCCCccHHHHHHHhhCccCC-----------CCCeEeeCCcChhhC---CHHHH--------HHHhh
Confidence 344444589999999999999999999999888 899999988654322 11110 01111
Q ss_pred ccCCcchh------HHHHh--------cCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce-----------
Q 016864 139 TARTCNCI------LIVLD--------AIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN----------- 191 (381)
Q Consensus 139 ~~~~~d~i------l~vvd--------~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~----------- 191 (381)
.+++...+ .-||. +..+.++.+.....|+..+. ...+....||+||++|..++
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~ 158 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVP 158 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCC
Confidence 12222211 11222 12234566667788888887 66777899999999997665
Q ss_pred ----eeecccCCCCCHHHHHHHHH
Q 016864 192 ----FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 192 ----i~~~~~~~~l~~~~v~~~l~ 211 (381)
+.+|||++.+|..+-..+|.
T Consensus 159 ~~r~L~LDEPtsaLDi~HQ~~tl~ 182 (259)
T COG4559 159 SGRWLFLDEPTSALDIAHQHHTLR 182 (259)
T ss_pred CCceEEecCCccccchHHHHHHHH
Confidence 45677777777665554443
No 441
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=5.2e-11 Score=112.04 Aligned_cols=142 Identities=15% Similarity=0.138 Sum_probs=78.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+... .|..|.+.++|..+.-.+. .. .......++..|.
T Consensus 57 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~------~p~~G~I~i~G~~i~~~~~-~~-~~~~~~i~~v~q~ 128 (285)
T PRK14254 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDA------ARVEGELTFRGKNVYDADV-DP-VALRRRIGMVFQK 128 (285)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccC------CCCceEEEECCEEcccccc-ch-HhhhccEEEEecC
Confidence 34444444589999999999999999999998642000 0167999998876532110 00 0001111111221
Q ss_pred hcccCCcchhHHH---HhcC-CChHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------eeeccc
Q 016864 137 ISTARTCNCILIV---LDAI-KPITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~~-~~~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
...+.. ++.-.+ .... .+....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||
T Consensus 129 ~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEP 207 (285)
T PRK14254 129 PNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEP 207 (285)
T ss_pred CccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111221 222111 1111 112233456677777776 35678899999999997665 444555
Q ss_pred CCCCCHHHHH
Q 016864 198 NTNLDLDTVK 207 (381)
Q Consensus 198 ~~~l~~~~v~ 207 (381)
++++|.....
T Consensus 208 ts~LD~~~~~ 217 (285)
T PRK14254 208 ASALDPVATS 217 (285)
T ss_pred CCCCCHHHHH
Confidence 5555554433
No 442
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.21 E-value=9e-11 Score=102.33 Aligned_cols=139 Identities=19% Similarity=0.184 Sum_probs=85.6
Q ss_pred CCCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeee--cCcccccccccCCCc
Q 016864 54 GGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQL--LDLPGIIEGAKDGKG 131 (381)
Q Consensus 54 ~~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l--~DtpG~~~~~~~~~~ 131 (381)
+++++.+..+ ...|++||+|||||||+++|......+.... ..|.+.++|..+.- +|...++. ..+
T Consensus 24 ~~i~l~i~~~--~VTAlIGPSGcGKST~LR~lNRmndl~~~~r------~~G~v~~~g~ni~~~~~d~~~lRr----~vG 91 (253)
T COG1117 24 KDINLDIPKN--KVTALIGPSGCGKSTLLRCLNRMNDLIPGAR------VEGEVLLDGKNIYDPKVDVVELRR----RVG 91 (253)
T ss_pred ccCceeccCC--ceEEEECCCCcCHHHHHHHHHhhcccCcCce------EEEEEEECCeeccCCCCCHHHHHH----Hhe
Confidence 3566666663 6999999999999999999988765422211 67999999877643 33333332 123
Q ss_pred chhhhhcccC--CcchhHHHHhcCC--ChHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------e
Q 016864 132 RGRQVISTAR--TCNCILIVLDAIK--PITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------F 192 (381)
Q Consensus 132 ~~~~~~~~~~--~~d~il~vvd~~~--~~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i 192 (381)
+..|.-.-++ -.|-+.+-..... ...-.+.++.-|....+ .+++....||+|++||.||+ +
T Consensus 92 MVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVl 171 (253)
T COG1117 92 MVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVL 171 (253)
T ss_pred eeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEE
Confidence 3333322222 1122222222211 11223334444444333 67788889999999999997 7
Q ss_pred eecccCCCCCHH
Q 016864 193 TSTVTNTNLDLD 204 (381)
Q Consensus 193 ~~~~~~~~l~~~ 204 (381)
.+|||++.+|+-
T Consensus 172 LmDEPtSALDPI 183 (253)
T COG1117 172 LMDEPTSALDPI 183 (253)
T ss_pred EecCcccccCch
Confidence 778999888874
No 443
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.21 E-value=6.8e-11 Score=110.53 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=79.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeec---CcccccccccCCCcch
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLL---DLPGIIEGAKDGKGRG 133 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~---DtpG~~~~~~~~~~~~ 133 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-. ...|+....+.-..
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~-- 91 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL-----------ASGKISILGQPTRQALQKNLVAYVPQSEEVDW-- 91 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEhHHhhccceEEEecccccccc--
Confidence 34444444589999999999999999999998877 789999888664210 01122221110000
Q ss_pred hhhhcccCCcchhHH-HH---hc--CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecc
Q 016864 134 RQVISTARTCNCILI-VL---DA--IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 134 ~~~~~~~~~~d~il~-vv---d~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
... ....+.+.+ .. .. .......+.+...++.+++ ..++++..||+|+++|..++ +.+||
T Consensus 92 --~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDE 168 (272)
T PRK15056 92 --SFP-VLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDE 168 (272)
T ss_pred --CCC-cchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 000 000000100 00 00 0112233456677788888 56788999999999997665 55566
Q ss_pred cCCCCCHHHHHHH
Q 016864 197 TNTNLDLDTVKAI 209 (381)
Q Consensus 197 ~~~~l~~~~v~~~ 209 (381)
|++++|......+
T Consensus 169 Pt~~LD~~~~~~l 181 (272)
T PRK15056 169 PFTGVDVKTEARI 181 (272)
T ss_pred CCccCCHHHHHHH
Confidence 6666665544433
No 444
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.21 E-value=4.3e-11 Score=111.65 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=78.2
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||+|||||+++|+|...+ ..|.+.++|..+.-.+..- ........++..
T Consensus 30 ~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~sG~i~~~g~~~~~~~~~~-~~~~~~~i~~v~ 95 (268)
T PRK10419 30 NVSLSLK--SGETVALLGRSGCGKSTLARLLVGLESP-----------SQGNVSWRGEPLAKLNRAQ-RKAFRRDIQMVF 95 (268)
T ss_pred ceeEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEeccccChhH-HHHHHhcEEEEE
Confidence 3444444 4489999999999999999999998777 7899999887653221100 000001111111
Q ss_pred hhh--cccCCcch---hHHHHhc-C--CChHHHHHHHHHHHhccc---ccccCcCcccceeeccccce---------eee
Q 016864 135 QVI--STARTCNC---ILIVLDA-I--KPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 135 ~~~--~~~~~~d~---il~vvd~-~--~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
+.. ......++ +.+.... . ........+.+.++.+++ ..++++..||+|+++|..++ +.+
T Consensus 96 q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllL 175 (268)
T PRK10419 96 QDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLIL 175 (268)
T ss_pred cChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 111 01111111 1111111 1 122334467788888887 34778899999999996665 444
Q ss_pred cccCCCCCHHH
Q 016864 195 TVTNTNLDLDT 205 (381)
Q Consensus 195 ~~~~~~l~~~~ 205 (381)
|||++++|...
T Consensus 176 DEPt~~LD~~~ 186 (268)
T PRK10419 176 DEAVSNLDLVL 186 (268)
T ss_pred eCCCcccCHHH
Confidence 45555555443
No 445
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=7.1e-11 Score=109.68 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=78.6
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++. .+..++|+|+||||||||+++|+|...+.. ..|..|.+.++|..+.-.+.+. .......++..
T Consensus 31 ~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p------~~p~~G~i~~~g~~~~~~~~~~--~~~~~~i~~~~ 100 (260)
T PRK10744 31 NINLDIA--KNQVTAFIGPSGCGKSTLLRTFNRMYELYP------EQRAEGEILLDGENILTPKQDI--ALLRAKVGMVF 100 (260)
T ss_pred ceeEEEc--CCCEEEEECCCCCCHHHHHHHHhcccccCC------CCCcceEEEECCEEccccccch--HHHhcceEEEe
Confidence 3444444 448999999999999999999999864200 0125799999887653211100 00011111111
Q ss_pred hhhcccCCcchh---HHHHhcC---CChHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------ee
Q 016864 135 QVISTARTCNCI---LIVLDAI---KPITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 135 ~~~~~~~~~d~i---l~vvd~~---~~~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
+....+. .++. .+..... ......+.+.+.++.+++ ..++++..||+|+++|..++ +.
T Consensus 101 q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 179 (260)
T PRK10744 101 QKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLL 179 (260)
T ss_pred cCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 2111111 2222 1111111 112223456677777775 25678899999999997665 44
Q ss_pred ecccCCCCCHHHHHH
Q 016864 194 STVTNTNLDLDTVKA 208 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~ 208 (381)
+|||++++|......
T Consensus 180 LDEPt~~LD~~~~~~ 194 (260)
T PRK10744 180 LDEPCSALDPISTGR 194 (260)
T ss_pred EcCCCccCCHHHHHH
Confidence 555555555544433
No 446
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.21 E-value=4.7e-11 Score=106.47 Aligned_cols=115 Identities=19% Similarity=0.314 Sum_probs=72.0
Q ss_pred CCCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcch
Q 016864 54 GGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRG 133 (381)
Q Consensus 54 ~~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~ 133 (381)
++++|++.. | .+|||||+||||||||++.|+|...| +.|.+..+|.-..+++...-+.+...|
T Consensus 44 ~disf~i~~-G-e~vGiiG~NGaGKSTLlkliaGi~~P-----------t~G~v~v~G~v~~li~lg~Gf~pelTG---- 106 (249)
T COG1134 44 KDISFEIYK-G-ERVGIIGHNGAGKSTLLKLIAGIYKP-----------TSGKVKVTGKVAPLIELGAGFDPELTG---- 106 (249)
T ss_pred cCceEEEeC-C-CEEEEECCCCCcHHHHHHHHhCccCC-----------CCceEEEcceEehhhhcccCCCcccch----
Confidence 366666665 4 89999999999999999999999999 999999988655555542222211111
Q ss_pred hhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeecccccee
Q 016864 134 RQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGINF 192 (381)
Q Consensus 134 ~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~i 192 (381)
.+ +.-+.-.+.. ....+-.+.+.++.+...+ ..+.++..+|-|++.|.+.++
T Consensus 107 re------Ni~l~~~~~G-~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsi 160 (249)
T COG1134 107 RE------NIYLRGLILG-LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSV 160 (249)
T ss_pred HH------HHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhh
Confidence 11 1111111111 1112223334444444444 788899999999999976653
No 447
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.21 E-value=2.9e-11 Score=123.33 Aligned_cols=124 Identities=18% Similarity=0.172 Sum_probs=71.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc-CEEe-eecCcc-cccccccCCCcch
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR-GAKI-QLLDLP-GIIEGAKDGKGRG 133 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~-g~~i-~l~Dtp-G~~~~~~~~~~~~ 133 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++ |..+ .+.+.+ .-........++.
T Consensus 302 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v 370 (520)
T TIGR03269 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP-----------TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGIL 370 (520)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEEecCCccccccccchhhHHHHhhhEEEE
Confidence 44444445589999999999999999999999877 78988885 4321 111100 0000000111222
Q ss_pred hhhhcccCCcchhHHHH---hcCCC-hHHHHHHHHHHHhcccc-------cccCcCcccceeeccccce
Q 016864 134 RQVISTARTCNCILIVL---DAIKP-ITHKRLIEKELEGFGIR-------LNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 134 ~~~~~~~~~~d~il~vv---d~~~~-~~~~~~i~~~l~~~~~~-------~~~~~~~ls~~~~~r~~~~ 191 (381)
.|........++.-.+. ....+ ....+.+.+.++.+++. .++++..||+|+++|..++
T Consensus 371 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~la 439 (520)
T TIGR03269 371 HQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALA 439 (520)
T ss_pred ccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHH
Confidence 22211222233322221 11112 22335677788888883 4788999999999996665
No 448
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.21 E-value=3.7e-11 Score=122.50 Aligned_cols=145 Identities=18% Similarity=0.191 Sum_probs=85.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhccc--ccccccccceeeeecEEEEEcC-----------------------
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTF--SEVASYEFTTLTCIPGVITYRG----------------------- 111 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~--~~~~~~~~tT~~~~~g~i~~~g----------------------- 111 (381)
++++....+..++|+|+||||||||+++|+|.. .+ ..|.+.+++
T Consensus 18 ~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-----------~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g 86 (520)
T TIGR03269 18 NISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP-----------TSGRIIYHVALCEKCGYVERPSKVGEPCPVCG 86 (520)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC-----------CceEEEEecccccccccccccccccccccccc
Confidence 334444445899999999999999999999985 45 667777652
Q ss_pred EEee--ecCcccc----cccccCCCcchhhh-hcccCCcch---hHHHHhcC-CC-hHHHHHHHHHHHhccc--ccccCc
Q 016864 112 AKIQ--LLDLPGI----IEGAKDGKGRGRQV-ISTARTCNC---ILIVLDAI-KP-ITHKRLIEKELEGFGI--RLNKQP 177 (381)
Q Consensus 112 ~~i~--l~DtpG~----~~~~~~~~~~~~~~-~~~~~~~d~---il~vvd~~-~~-~~~~~~i~~~l~~~~~--~~~~~~ 177 (381)
..+. ..|.... ........++..|. ...+...++ +.+..... .+ ....+.+.+.++.+++ ..++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 166 (520)
T TIGR03269 87 GTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA 166 (520)
T ss_pred ccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCc
Confidence 1110 0111000 00001111222221 111222222 22211111 11 2234567788888998 457889
Q ss_pred Ccccceeeccccce---------eeecccCCCCCHHHHHHHHHH
Q 016864 178 PNLTFRKKDKGGIN---------FTSTVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 178 ~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~v~~~l~~ 212 (381)
..||+|+++|..++ +.+|||++++|......+++.
T Consensus 167 ~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 99999999998887 777999999999887776543
No 449
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=5.7e-11 Score=113.76 Aligned_cols=149 Identities=17% Similarity=0.107 Sum_probs=91.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+. ..+..|.+.++|.++.-.+............++..|.
T Consensus 25 ~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-------~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~ 97 (326)
T PRK11022 25 RISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-------GRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQD 97 (326)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-------CCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecC
Confidence 334444445899999999999999999999986531 1125799999997653221111100000011111211
Q ss_pred h--cccCCcch---hHHHHhc---CCChHHHHHHHHHHHhcccc-----cccCcCcccceeeccccce---------eee
Q 016864 137 I--STARTCNC---ILIVLDA---IKPITHKRLIEKELEGFGIR-----LNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~--~~~~~~d~---il~vvd~---~~~~~~~~~i~~~l~~~~~~-----~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
. ...+...+ +...+.. .......+.+.+.|+.+++. +++++..||+|++||..++ +++
T Consensus 98 ~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llil 177 (326)
T PRK11022 98 PMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIA 177 (326)
T ss_pred chhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 1 11121121 1111111 11233456678888888882 4788999999999999887 888
Q ss_pred cccCCCCCHHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~~ 212 (381)
|||++++|......+++.
T Consensus 178 DEPts~LD~~~~~~il~l 195 (326)
T PRK11022 178 DEPTTALDVTIQAQIIEL 195 (326)
T ss_pred eCCCCCCCHHHHHHHHHH
Confidence 999999999877766554
No 450
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.21 E-value=1.3e-10 Score=98.85 Aligned_cols=147 Identities=19% Similarity=0.234 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc-------cccc---cceeeeecEEEEEcC-EEeeecCcccccccccCCCcchh
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV-------ASYE---FTTLTCIPGVITYRG-AKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~-------~~~~---~tT~~~~~g~i~~~g-~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
.+|+++|+-++||||++++++-..... ...- .||+-+..|.+.+++ ..+.++||||..+. +
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF--------~ 82 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF--------K 82 (187)
T ss_pred eeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH--------H
Confidence 799999999999999999998765311 1122 489999999999886 89999999998664 3
Q ss_pred hhhc-ccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHh
Q 016864 135 QVIS-TARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEY 213 (381)
Q Consensus 135 ~~~~-~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~ 213 (381)
-+++ ..+.+..+++++|.+.+....+
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~~a----------------------------------------------------- 109 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITFHA----------------------------------------------------- 109 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcchHH-----------------------------------------------------
Confidence 3333 4578899999999988753200
Q ss_pred cccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCC---HHHHHHHh----cCCCeeeecccccccHHHHHHHH
Q 016864 214 RIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQIT---LEELEILD----KLPHYCPVSAHLEWNLDGLLEKI 286 (381)
Q Consensus 214 ~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~---~~~l~~l~----~~~~~v~vSa~~~~gl~~L~~~i 286 (381)
+.+++.+.... ..|.++++||.|+.+ ++.+..+. ...++|.++|..+.++.+.++.+
T Consensus 110 ---------------~~ii~f~~~~~-~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~l 173 (187)
T COG2229 110 ---------------EEIIDFLTSRN-PIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVL 173 (187)
T ss_pred ---------------HHHHHHHhhcc-CCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHH
Confidence 01111222111 169999999999984 44443332 24578999999999999988887
Q ss_pred HHH
Q 016864 287 WEY 289 (381)
Q Consensus 287 ~~~ 289 (381)
...
T Consensus 174 l~~ 176 (187)
T COG2229 174 LLK 176 (187)
T ss_pred Hhh
Confidence 664
No 451
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.21 E-value=3.3e-11 Score=123.16 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=71.4
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|.. + ..|.+.++|.++.-.+...... .....++..|.
T Consensus 304 ~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-----------~~G~i~~~g~~i~~~~~~~~~~-~~~~i~~v~q~ 370 (529)
T PRK15134 304 NISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-----------SQGEIWFDGQPLHNLNRRQLLP-VRHRIQVVFQD 370 (529)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-----------CCcEEEECCEEccccchhhHHH-hhhceEEEEeC
Confidence 344444445899999999999999999999975 4 4689999887654221100000 00111221221
Q ss_pred h--cccCCcchhHHHH---hc----CCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccce
Q 016864 137 I--STARTCNCILIVL---DA----IKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 137 ~--~~~~~~d~il~vv---d~----~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~ 191 (381)
. ......++.-.+. .. .......+.+.+.++.+++. .++++..||+|+++|..++
T Consensus 371 ~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 437 (529)
T PRK15134 371 PNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIA 437 (529)
T ss_pred chhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHH
Confidence 1 1122223322221 10 11122345677888889882 5788999999999996665
No 452
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.21 E-value=3.8e-11 Score=121.85 Aligned_cols=144 Identities=15% Similarity=0.149 Sum_probs=88.7
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ++..|.+.++|.++.-.+... ......++..
T Consensus 19 ~isl~i~--~Ge~~~liG~nGsGKSTLl~~i~G~~~~---------~~~~G~i~~~g~~~~~~~~~~---~~~~~i~~v~ 84 (500)
T TIGR02633 19 GIDLEVR--PGECVGLCGENGAGKSTLMKILSGVYPH---------GTWDGEIYWSGSPLKASNIRD---TERAGIVIIH 84 (500)
T ss_pred ceEEEEe--CCcEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCHHH---HHhCCEEEEe
Confidence 3445544 4489999999999999999999997643 125799999887654221100 0011122222
Q ss_pred hhhcccCCcchhHHHHh---c------CCChHHHHHHHHHHHhcccc--c-ccCcCcccceeeccccce---------ee
Q 016864 135 QVISTARTCNCILIVLD---A------IKPITHKRLIEKELEGFGIR--L-NKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd---~------~~~~~~~~~i~~~l~~~~~~--~-~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
|........++.-.+.- . .......+.+.+.++.+++. . .+++..||+|+++|..++ +.
T Consensus 85 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lll 164 (500)
T TIGR02633 85 QELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLI 164 (500)
T ss_pred eccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 22112222233222110 0 01112234567788888883 2 466899999999998887 77
Q ss_pred ecccCCCCCHHHHHHHHHH
Q 016864 194 STVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~~l~~ 212 (381)
+|||++++|......+.+.
T Consensus 165 LDEPt~~LD~~~~~~l~~~ 183 (500)
T TIGR02633 165 LDEPSSSLTEKETEILLDI 183 (500)
T ss_pred EeCCCCCCCHHHHHHHHHH
Confidence 8999999999877766543
No 453
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.20 E-value=6.1e-11 Score=109.34 Aligned_cols=118 Identities=16% Similarity=0.206 Sum_probs=68.3
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++.. +..++|+|+||||||||+++|+|.. + ..|.+.++|..+.-.+..... ...++..
T Consensus 14 ~vsl~i~~--Gei~~l~G~nGsGKSTLl~~l~Gl~-~-----------~~G~i~~~g~~i~~~~~~~~~----~~i~~v~ 75 (248)
T PRK03695 14 PLSAEVRA--GEILHLVGPNGAGKSTLLARMAGLL-P-----------GSGSIQFAGQPLEAWSAAELA----RHRAYLS 75 (248)
T ss_pred ceEEEEcC--CCEEEEECCCCCCHHHHHHHHcCCC-C-----------CCeEEEECCEecCcCCHHHHh----hheEEec
Confidence 44555544 4899999999999999999999975 3 368888888765322111100 0011111
Q ss_pred hhhcccCCcchhHHHH---hc-CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccc
Q 016864 135 QVISTARTCNCILIVL---DA-IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGI 190 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv---d~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~ 190 (381)
+.........+.-.+. .. .......+.+.+.++.+++ ..++.+..||+|+++|..+
T Consensus 76 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 137 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRL 137 (248)
T ss_pred ccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHH
Confidence 1111111112211111 00 1112234566778888888 4578899999999999554
No 454
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.20 E-value=2.4e-11 Score=120.62 Aligned_cols=143 Identities=20% Similarity=0.255 Sum_probs=96.2
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCC--Ccc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG--KGR 132 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~--~~~ 132 (381)
+++|++.. +.++||||.+|||||||.++|+|...| ..|.+.++|..+.+- .+-....... ..+
T Consensus 309 ~VSf~l~~--GE~lglVGeSGsGKSTlar~i~gL~~P-----------~~G~i~~~g~~~~~~--~~~~~~~r~~~QmvF 373 (539)
T COG1123 309 DVSFDLRE--GETLGLVGESGSGKSTLARILAGLLPP-----------SSGSIIFDGQDLDLT--GGELRRLRRRIQMVF 373 (539)
T ss_pred eeeeEecC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEEeCcccccc--cchhhhhhhheEEEE
Confidence 45566555 489999999999999999999999988 889998887662221 1211111111 112
Q ss_pred hhhhhcccCCcchhHHHHhc---CCC---hHHHHHHHHHHHhccc---ccccCcCcccceeeccccce---------eee
Q 016864 133 GRQVISTARTCNCILIVLDA---IKP---ITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 133 ~~~~~~~~~~~d~il~vvd~---~~~---~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
.+.+.++-+..++.-.+-.. ..+ ....+++.+.|+..++ .++++|..||+|++||.+|+ ++.
T Consensus 374 Qdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~ 453 (539)
T COG1123 374 QDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLIL 453 (539)
T ss_pred eCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEe
Confidence 23333333444443332221 111 2334468888898888 58899999999999999997 778
Q ss_pred cccCCCCCHHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~~ 212 (381)
|||++.+|......+++.
T Consensus 454 DEp~SaLDvsvqa~VlnL 471 (539)
T COG1123 454 DEPVSALDVSVQAQVLNL 471 (539)
T ss_pred cCCccccCHHHHHHHHHH
Confidence 999999998877766654
No 455
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=8.9e-11 Score=109.56 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=75.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+.... |..|.+.++|.++.-.+.. ... .....++..+.
T Consensus 31 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~------p~~G~v~~~g~~i~~~~~~-~~~-~~~~i~~v~q~ 102 (269)
T PRK14259 31 NVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGC------SLKGRVLFDGTDLYDPRVD-PVE-VRRRIGMVFQQ 102 (269)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCC------CCceEEEECCEEcccccCC-HHH-HhhceEEEccC
Confidence 334444445899999999999999999999986421000 2689999988765311100 000 00111111121
Q ss_pred hcccCCcchhHHHH---hcCC-ChHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------eeeccc
Q 016864 137 ISTARTCNCILIVL---DAIK-PITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 137 ~~~~~~~d~il~vv---d~~~-~~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
...+.. ++.-.+. .... .....+.+...++.+++ ..++++..||+|+++|..++ +.+|||
T Consensus 103 ~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 181 (269)
T PRK14259 103 PNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEP 181 (269)
T ss_pred Cccchh-hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 111111 2221111 1111 11123344555666654 35778899999999996665 444555
Q ss_pred CCCCCHHHHH
Q 016864 198 NTNLDLDTVK 207 (381)
Q Consensus 198 ~~~l~~~~v~ 207 (381)
++++|.....
T Consensus 182 t~gLD~~~~~ 191 (269)
T PRK14259 182 CSALDPISTL 191 (269)
T ss_pred CccCCHHHHH
Confidence 5555554433
No 456
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=4.9e-11 Score=112.29 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=74.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|..... |. .+..|.+.++|.++.-... .. .......++..+.
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~---p~---~~~~G~I~~~g~~i~~~~~-~~-~~~~~~i~~v~q~ 128 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLI---PS---CHTTGALMFDGEDIYGKFT-DE-VLLRKKIGMVFQK 128 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccC---CC---CCCceEEEECCEEhhhccc-ch-HHhhhcEEEECCC
Confidence 344444445899999999999999999999964310 00 0167889998876531100 00 0001111111111
Q ss_pred hcccCCcchhHHH---Hh--cCCC-hHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------eeec
Q 016864 137 ISTARTCNCILIV---LD--AIKP-ITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd--~~~~-~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
...+.. ++.-.+ .. .... ....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|
T Consensus 129 ~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD 207 (286)
T PRK14275 129 PNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLD 207 (286)
T ss_pred CCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111111 222111 11 1111 1223455566666665 35678899999999996654 4444
Q ss_pred ccCCCCCHHHHH
Q 016864 196 VTNTNLDLDTVK 207 (381)
Q Consensus 196 ~~~~~l~~~~v~ 207 (381)
||++++|.....
T Consensus 208 EPt~gLD~~~~~ 219 (286)
T PRK14275 208 EPTSALDPKATA 219 (286)
T ss_pred CCCccCCHHHHH
Confidence 555555544433
No 457
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=5.2e-11 Score=116.55 Aligned_cols=153 Identities=22% Similarity=0.318 Sum_probs=100.6
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++.+ | .+|||||.|||||||++|+|.+-.. ..|.+.++|..+.=++.-+++
T Consensus 370 gvsf~I~k-G-ekVaIvG~nGsGKSTilr~LlrF~d------------~sG~I~IdG~dik~~~~~SlR----------- 424 (591)
T KOG0057|consen 370 GVSFTIPK-G-EKVAIVGSNGSGKSTILRLLLRFFD------------YSGSILIDGQDIKEVSLESLR----------- 424 (591)
T ss_pred ceeEEecC-C-CEEEEECCCCCCHHHHHHHHHHHhc------------cCCcEEECCeeHhhhChHHhh-----------
Confidence 56666665 3 8999999999999999999987542 579999999888766544432
Q ss_pred hhhcccCCc-----chhHHHHhcCCChHHHHHHHHHHHhccc-c------------cccCcCcccceeeccccce-----
Q 016864 135 QVISTARTC-----NCILIVLDAIKPITHKRLIEKELEGFGI-R------------LNKQPPNLTFRKKDKGGIN----- 191 (381)
Q Consensus 135 ~~~~~~~~~-----d~il~vvd~~~~~~~~~~i~~~l~~~~~-~------------~~~~~~~ls~~~~~r~~~~----- 191 (381)
+.+...++- |.|++=+--..+....+.+.+..+++++ + +..+-..||+||+||..++
T Consensus 425 ~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 425 QSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred hheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 222222222 2344444444555556677778888877 2 2223356999999998775
Q ss_pred ----eeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcC
Q 016864 192 ----FTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQI 254 (381)
Q Consensus 192 ----i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~ 254 (381)
+..||+++++|.+.-..++. .+......+.+|+|++..|+.
T Consensus 505 da~Il~~DEaTS~LD~~TE~~i~~----------------------~i~~~~~~rTvI~IvH~l~ll 549 (591)
T KOG0057|consen 505 DAPILLLDEATSALDSETEREILD----------------------MIMDVMSGRTVIMIVHRLDLL 549 (591)
T ss_pred CCCeEEecCcccccchhhHHHHHH----------------------HHHHhcCCCeEEEEEecchhH
Confidence 66677777777765444443 333322236788888887764
No 458
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=7e-11 Score=110.28 Aligned_cols=141 Identities=18% Similarity=0.167 Sum_probs=89.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|..+.-.+.+.+. ...++..+.
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~~----~~i~~v~q~ 91 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-----------KSGEIFYNNQAITDDNFEKLR----KHIGIVFQN 91 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHHH----hheeEEEeC
Confidence 44444444589999999999999999999999877 789999998765322111110 111111111
Q ss_pred hc-ccCCcch---hHHHHh-cCCC-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 137 IS-TARTCNC---ILIVLD-AIKP-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 137 ~~-~~~~~d~---il~vvd-~~~~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
.. .+....+ +.+... ...+ ....+.+...++.+++ ..+.++..||+|+++|..++ +.+|||++
T Consensus 92 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 171 (269)
T PRK13648 92 PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATS 171 (269)
T ss_pred hHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 10 1111111 111111 1111 2223456677888888 56788999999999998886 77899999
Q ss_pred CCCHHHHHHHHHH
Q 016864 200 NLDLDTVKAICSE 212 (381)
Q Consensus 200 ~l~~~~v~~~l~~ 212 (381)
++|......+++.
T Consensus 172 ~LD~~~~~~l~~~ 184 (269)
T PRK13648 172 MLDPDARQNLLDL 184 (269)
T ss_pred cCCHHHHHHHHHH
Confidence 9999877765543
No 459
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=8e-11 Score=110.52 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=90.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-. ..........++..+.
T Consensus 28 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~i~g~~i~~~---~~~~~~~~~i~~v~q~ 93 (280)
T PRK13633 28 DVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP-----------SEGKVYVDGLDTSDE---ENLWDIRNKAGMVFQN 93 (280)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEecccc---ccHHHHhhheEEEecC
Confidence 33444444589999999999999999999999877 889999998765311 1000001111111111
Q ss_pred hc-ccCCcch---hHHHHh-cC-CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 137 IS-TARTCNC---ILIVLD-AI-KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 137 ~~-~~~~~d~---il~vvd-~~-~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
.. .+....+ +.+... .. .+....+.+...++.+++ ...+++..||+|+++|..++ +.+|||++
T Consensus 94 ~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 173 (280)
T PRK13633 94 PDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTA 173 (280)
T ss_pred hhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 10 0011111 111111 11 122234567778888888 56788999999999998887 78899999
Q ss_pred CCCHHHHHHHHHH
Q 016864 200 NLDLDTVKAICSE 212 (381)
Q Consensus 200 ~l~~~~v~~~l~~ 212 (381)
++|......+++.
T Consensus 174 gLD~~~~~~l~~~ 186 (280)
T PRK13633 174 MLDPSGRREVVNT 186 (280)
T ss_pred cCCHHHHHHHHHH
Confidence 9999877766553
No 460
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=4.3e-11 Score=112.86 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=82.4
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeee-cCcccccccccCCCcch
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQL-LDLPGIIEGAKDGKGRG 133 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l-~DtpG~~~~~~~~~~~~ 133 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.- ...+..........++.
T Consensus 29 ~is~~i~--~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v 95 (289)
T PRK13645 29 NTSLTFK--KNKVTCVIGTTGSGKSTMIQLTNGLIIS-----------ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLV 95 (289)
T ss_pred eeEEEEe--CCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEccccccccccHHHHhccEEEE
Confidence 3445544 4489999999999999999999999877 78999888876521 00000000000011111
Q ss_pred hhhhc-ccCCcch---hHHH-Hh-cCCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccce---------eeec
Q 016864 134 RQVIS-TARTCNC---ILIV-LD-AIKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 134 ~~~~~-~~~~~d~---il~v-vd-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
.+... .+...++ +.+. .. ........+.+...++.+++ ..++++..||+|+++|..++ +.+|
T Consensus 96 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD 175 (289)
T PRK13645 96 FQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLD 175 (289)
T ss_pred EeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 11100 0000111 1111 11 11112223456667777777 35778899999999997776 6667
Q ss_pred ccCCCCCHHHHHHHHH
Q 016864 196 VTNTNLDLDTVKAICS 211 (381)
Q Consensus 196 ~~~~~l~~~~v~~~l~ 211 (381)
||++++|......+++
T Consensus 176 EPt~~LD~~~~~~l~~ 191 (289)
T PRK13645 176 EPTGGLDPKGEEDFIN 191 (289)
T ss_pred CCcccCCHHHHHHHHH
Confidence 7777777766554433
No 461
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=6.5e-11 Score=109.54 Aligned_cols=142 Identities=19% Similarity=0.171 Sum_probs=77.2
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+.+.. +..|.+.++|.++.-.+.+ . .......++..
T Consensus 25 ~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~------~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~v~ 94 (254)
T PRK14273 25 NINIKIL--KNSITALIGPSGCGKSTFLRTLNRMNDLVEGI------KIEGNVIYEGKNIYSNNFD-I-LELRRKIGMVF 94 (254)
T ss_pred ceeeEEc--CCCEEEEECCCCCCHHHHHHHHhccccCCcCC------CCceEEEECCEeccccccc-H-HHHhhceEEEe
Confidence 3445544 44899999999999999999999987551100 1479999988765311100 0 00011111212
Q ss_pred hhhcccCCcch---hHHHHhcC---CChHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------ee
Q 016864 135 QVISTARTCNC---ILIVLDAI---KPITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 135 ~~~~~~~~~d~---il~vvd~~---~~~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
|....+ ..++ +.+..... ......+.+...++.+++ ..++++..||+|+++|..++ +.
T Consensus 95 q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 173 (254)
T PRK14273 95 QTPNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVIL 173 (254)
T ss_pred eccccc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 211111 1222 21111111 111223455666666665 35778899999999996665 44
Q ss_pred ecccCCCCCHHHHH
Q 016864 194 STVTNTNLDLDTVK 207 (381)
Q Consensus 194 ~~~~~~~l~~~~v~ 207 (381)
+|||++++|.....
T Consensus 174 LDEPt~~LD~~~~~ 187 (254)
T PRK14273 174 MDEPTSALDPISTG 187 (254)
T ss_pred EeCCCcccCHHHHH
Confidence 45555555554443
No 462
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.18 E-value=3.5e-11 Score=121.82 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=86.6
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.+...... ..+...
T Consensus 21 ~vsl~i~--~Ge~~~liG~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~~~~~~~~~~~~~~~----~i~~~~ 83 (490)
T PRK10938 21 LPSLTLN--AGDSWAFVGANGSGKSALARALAGELPL-----------LSGERQSQFSHITRLSFEQLQK----LVSDEW 83 (490)
T ss_pred cceEEEc--CCCEEEEECCCCCCHHHHHHHHhccCCC-----------CCceEEECCcccccCCHHHHHH----Hhceec
Confidence 4455554 4489999999999999999999998777 7788888765432111000000 000001
Q ss_pred hhhc--ccCCc--chhHHHHhcC-CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccC
Q 016864 135 QVIS--TARTC--NCILIVLDAI-KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTN 198 (381)
Q Consensus 135 ~~~~--~~~~~--d~il~vvd~~-~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~ 198 (381)
+... .+... ..-+-+.+.. ......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||+
T Consensus 84 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (490)
T PRK10938 84 QRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPF 163 (490)
T ss_pred cCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 1000 00000 0000111110 011234567778888888 46888999999999998887 7789999
Q ss_pred CCCCHHHHHHHHHH
Q 016864 199 TNLDLDTVKAICSE 212 (381)
Q Consensus 199 ~~l~~~~v~~~l~~ 212 (381)
+++|......+.+.
T Consensus 164 ~~LD~~~~~~l~~~ 177 (490)
T PRK10938 164 DGLDVASRQQLAEL 177 (490)
T ss_pred ccCCHHHHHHHHHH
Confidence 99999877766553
No 463
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.18 E-value=8.7e-11 Score=106.31 Aligned_cols=144 Identities=18% Similarity=0.170 Sum_probs=90.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.-.+ +-.......+.+...
T Consensus 23 ~vs~~i~--~G~~~~I~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~-~~~~~~~~~~i~~~~ 88 (220)
T TIGR02982 23 DINLEIN--PGEIVILTGPSGSGKTTLLTLIGGLRSV-----------QEGSLKVLGQELYGAS-EKELVQLRRNIGYIF 88 (220)
T ss_pred eeEEEEc--CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEhHhcC-HhHHHHHHhheEEEc
Confidence 3444444 4489999999999999999999998777 8899999987663211 000000001111111
Q ss_pred hhhcccCCcch---hHHHHhcC---CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 135 QVISTARTCNC---ILIVLDAI---KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 135 ~~~~~~~~~d~---il~vvd~~---~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
+.........+ +.+..+.. ........+.+.++.+++ ...+.+..||+|+++|..++ +.+|||
T Consensus 89 q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 89 QAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11111111122 22222211 112234457778888888 46788899999999998876 778999
Q ss_pred CCCCCHHHHHHHHHH
Q 016864 198 NTNLDLDTVKAICSE 212 (381)
Q Consensus 198 ~~~l~~~~v~~~l~~ 212 (381)
+.++|.+....++..
T Consensus 169 ~~~LD~~~~~~l~~~ 183 (220)
T TIGR02982 169 TAALDSKSGRDVVEL 183 (220)
T ss_pred CCcCCHHHHHHHHHH
Confidence 999999876655543
No 464
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.18 E-value=7.4e-11 Score=106.73 Aligned_cols=140 Identities=19% Similarity=0.258 Sum_probs=82.2
Q ss_pred CceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhh
Q 016864 56 EGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 56 ~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
.++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|..+.-.+.... ....++..+
T Consensus 21 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q 85 (220)
T cd03245 21 DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP-----------TSGSVLLDGTDIRQLDPADL----RRNIGYVPQ 85 (220)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCeEEECCEEhHHCCHHHH----HhhEEEeCC
Confidence 344444444589999999999999999999998877 78999998876532110000 001111111
Q ss_pred hhcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc--cccc-----------CcCcccceeeccccce---------ee
Q 016864 136 VISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI--RLNK-----------QPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~-----------~~~~ls~~~~~r~~~~---------i~ 193 (381)
...... .++...+. ..........+...++.+++ ...+ .+..||+|+++|..++ +.
T Consensus 86 ~~~~~~-~tv~e~l~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll 163 (220)
T cd03245 86 DVTLFY-GTLRDNIT-LGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILL 163 (220)
T ss_pred CCcccc-chHHHHhh-cCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 111111 12222111 11111112234455555555 2222 3469999999998886 77
Q ss_pred ecccCCCCCHHHHHHHHHH
Q 016864 194 STVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~~l~~ 212 (381)
+|||++++|......+.+.
T Consensus 164 lDEPt~~LD~~~~~~l~~~ 182 (220)
T cd03245 164 LDEPTSAMDMNSEERLKER 182 (220)
T ss_pred EeCccccCCHHHHHHHHHH
Confidence 8999999999877665543
No 465
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.2e-10 Score=107.67 Aligned_cols=143 Identities=16% Similarity=0.126 Sum_probs=77.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+... .+..|.+.++|.++.-.+ +... ......+...+.
T Consensus 22 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~v~~~g~~i~~~~-~~~~-~~~~~i~~~~q~ 93 (252)
T PRK14256 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPS------ARVTGKILLDDTDIYDRG-VDPV-SIRRRVGMVFQK 93 (252)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCC------CCCceEEEECCEEccccc-CChH-HhhccEEEEecC
Confidence 33444444589999999999999999999998641000 014688898887653211 0000 001111111222
Q ss_pred hcccCCcchhHHH---Hhc-C--CChHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------eeec
Q 016864 137 ISTARTCNCILIV---LDA-I--KPITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~-~--~~~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
...+...++.-.+ ... . ......+.+.+.++.+++ .....+..||+|+++|..++ +.+|
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 173 (252)
T PRK14256 94 PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD 173 (252)
T ss_pred CCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1122222332211 111 1 111223446667777776 23567889999999997665 4445
Q ss_pred ccCCCCCHHHHH
Q 016864 196 VTNTNLDLDTVK 207 (381)
Q Consensus 196 ~~~~~l~~~~v~ 207 (381)
||++++|.....
T Consensus 174 EP~~gLD~~~~~ 185 (252)
T PRK14256 174 EPASALDPISTL 185 (252)
T ss_pred CCcccCCHHHHH
Confidence 555555554443
No 466
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.18 E-value=4.8e-11 Score=108.79 Aligned_cols=121 Identities=21% Similarity=0.147 Sum_probs=69.8
Q ss_pred CceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhh
Q 016864 56 EGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 56 ~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
.++++.. +..++|+|+||||||||+++|+|...+. .+ +..|.+.++|.++.-.+.. ....+...+
T Consensus 5 vs~~i~~--Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-----~~--~~~G~i~~~g~~~~~~~~~------~~~i~~~~q 69 (230)
T TIGR02770 5 LNLSLKR--GEVLALVGESGSGKSLTCLAILGLLPPG-----LT--QTSGEILLDGRPLLPLSIR------GRHIATIMQ 69 (230)
T ss_pred eeEEEcC--CCEEEEECCCCCCHHHHHHHHhcCCCCc-----cC--ccccEEEECCEechhhhhh------hheeEEEec
Confidence 3445444 4899999999999999999999986541 00 2578898888765322110 001111111
Q ss_pred hhc--ccCCcch---hHHHHh-cCC-ChHHHHHHHHHHHhcccc-----cccCcCcccceeeccccce
Q 016864 136 VIS--TARTCNC---ILIVLD-AIK-PITHKRLIEKELEGFGIR-----LNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 136 ~~~--~~~~~d~---il~vvd-~~~-~~~~~~~i~~~l~~~~~~-----~~~~~~~ls~~~~~r~~~~ 191 (381)
... ......+ +...+. ... .....+.+.+.++.+++. .++.+..||+|+++|..++
T Consensus 70 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~la 137 (230)
T TIGR02770 70 NPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIA 137 (230)
T ss_pred CchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHH
Confidence 100 0011111 111111 111 122345577888888884 5778899999999996665
No 467
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=7.4e-11 Score=110.87 Aligned_cols=141 Identities=18% Similarity=0.169 Sum_probs=89.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeec---EEEEEcCEEeeecCcccccccccCCCcch
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIP---GVITYRGAKIQLLDLPGIIEGAKDGKGRG 133 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~---g~i~~~g~~i~l~DtpG~~~~~~~~~~~~ 133 (381)
++++....+..++|+|+||||||||+++|+|...+ .. |.+.++|.++.-.+...+ ....++.
T Consensus 25 ~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p-----------~~g~~G~i~i~g~~~~~~~~~~~----~~~ig~v 89 (282)
T PRK13640 25 DISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP-----------DDNPNSKITVDGITLTAKTVWDI----REKVGIV 89 (282)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC-----------CCCCCcEEEECCEECCcCCHHHH----HhheEEE
Confidence 34444444589999999999999999999998766 44 889998876532111100 0111111
Q ss_pred hhhhc-ccCCcchhHHHH----hc-CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecc
Q 016864 134 RQVIS-TARTCNCILIVL----DA-IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 134 ~~~~~-~~~~~d~il~vv----d~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
.+... .+...++.-.+. .. ..+....+.+.+.++.+++ ..++++..||+|+++|..++ +.+||
T Consensus 90 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDE 169 (282)
T PRK13640 90 FQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDE 169 (282)
T ss_pred EECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 11110 111222222111 11 1112233557778888888 56888999999999998886 78899
Q ss_pred cCCCCCHHHHHHHHHH
Q 016864 197 TNTNLDLDTVKAICSE 212 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~~ 212 (381)
|++++|......+++.
T Consensus 170 Pt~gLD~~~~~~l~~~ 185 (282)
T PRK13640 170 STSMLDPAGKEQILKL 185 (282)
T ss_pred CcccCCHHHHHHHHHH
Confidence 9999999877766554
No 468
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=7.3e-11 Score=109.05 Aligned_cols=52 Identities=23% Similarity=0.359 Sum_probs=37.7
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEe
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKI 114 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i 114 (381)
+.+|++. .+..++|+|+||+|||||+++|+|...+... ....|.+.++|.++
T Consensus 22 ~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~------~~~~G~i~~~g~~~ 73 (252)
T PRK14272 22 NVNLDVQ--RGTVNALIGPSGCGKTTFLRAINRMHDLTPG------ARVTGRILLDGQDI 73 (252)
T ss_pred cceEEEc--CCCEEEEECCCCCCHHHHHHHHhccCCCCcC------CCCceeEEECCEEc
Confidence 3444444 4489999999999999999999998654100 01368888888765
No 469
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.17 E-value=1.6e-10 Score=104.95 Aligned_cols=76 Identities=26% Similarity=0.477 Sum_probs=54.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEE---EEEcCEEeeecCcccccccccCCCcchhhhhccc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGV---ITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTA 140 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~---i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 140 (381)
.+..|+++|++|+|||||+|+|.+.... ++.....|. +..++..+.++||||.. ...+..+
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~------~~~~~~~g~i~i~~~~~~~i~~vDtPg~~----------~~~l~~a 101 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTK------QNISDIKGPITVVTGKKRRLTFIECPNDI----------NAMIDIA 101 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhccc------CccccccccEEEEecCCceEEEEeCCchH----------HHHHHHH
Confidence 3478999999999999999999876321 112222332 22357889999999854 2334456
Q ss_pred CCcchhHHHHhcCCC
Q 016864 141 RTCNCILIVLDAIKP 155 (381)
Q Consensus 141 ~~~d~il~vvd~~~~ 155 (381)
..+|++++|+|+..+
T Consensus 102 k~aDvVllviDa~~~ 116 (225)
T cd01882 102 KVADLVLLLIDASFG 116 (225)
T ss_pred HhcCEEEEEEecCcC
Confidence 889999999998765
No 470
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=1.1e-10 Score=107.59 Aligned_cols=138 Identities=16% Similarity=0.176 Sum_probs=78.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||+|||||+++|+|...+. .|..|.+.++|.++.-.+..-+ ....++..+.
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--------~~~~G~i~~~g~~i~~~~~~~~----~~~i~~~~q~ 87 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKI--------AKIDGLVEIEGKDVKNQDVVAL----RKNVGMVFQQ 87 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--------CCCceEEEECCEecccCCHHHH----hhhEEEEecC
Confidence 344444445899999999999999999999975320 0267999999876642221110 1111111121
Q ss_pred hcccCCcchhHHHH---hc---C-CChHHHHHHHHHHHhcccc------cccCcCcccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVL---DA---I-KPITHKRLIEKELEGFGIR------LNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vv---d~---~-~~~~~~~~i~~~l~~~~~~------~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
...+. .++...+. .. . .+......+...++.+++. .++++..||+|+++|..++ +.+
T Consensus 88 ~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 166 (246)
T PRK14269 88 PNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLL 166 (246)
T ss_pred Ccccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11111 12211110 00 0 1122334566777887772 4677899999999996665 444
Q ss_pred cccCCCCCHHHHH
Q 016864 195 TVTNTNLDLDTVK 207 (381)
Q Consensus 195 ~~~~~~l~~~~v~ 207 (381)
|||++++|.....
T Consensus 167 DEP~~~LD~~~~~ 179 (246)
T PRK14269 167 DEPTSALDPISSG 179 (246)
T ss_pred cCCcccCCHHHHH
Confidence 5555555554433
No 471
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.17 E-value=1.4e-10 Score=104.60 Aligned_cols=148 Identities=22% Similarity=0.230 Sum_probs=87.3
Q ss_pred cEEEEEcCCCCchHHHHH-HHhcccccccccccceeeeecEEEE--Ec--CEEeeecCcccccccccCCCcchhhhhccc
Q 016864 66 SRVGLVGFPSVGKSTLLN-KLTGTFSEVASYEFTTLTCIPGVIT--YR--GAKIQLLDLPGIIEGAKDGKGRGRQVISTA 140 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln-~L~g~~~~~~~~~~tT~~~~~g~i~--~~--g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 140 (381)
.+|+++|++|||||||++ .++|...+ ...+|......... .+ ...+.++||+|...... ......
T Consensus 10 ~kv~liG~~g~GKTtLi~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~-------~~~~~~ 79 (215)
T PTZ00132 10 FKLILVGDGGVGKTTFVKRHLTGEFEK---KYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGG-------LRDGYY 79 (215)
T ss_pred ceEEEECCCCCCHHHHHHHHHhCCCCC---CCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhh-------hhHHHh
Confidence 699999999999999996 55654322 11223332222222 22 36788999999643211 111234
Q ss_pred CCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcc
Q 016864 141 RTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADI 220 (381)
Q Consensus 141 ~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 220 (381)
..++++++|+|.++... ...+. .++..+
T Consensus 80 ~~~~~~i~v~d~~~~~s-~~~~~--------------------------------------------~~~~~i------- 107 (215)
T PTZ00132 80 IKGQCAIIMFDVTSRIT-YKNVP--------------------------------------------NWHRDI------- 107 (215)
T ss_pred ccCCEEEEEEECcCHHH-HHHHH--------------------------------------------HHHHHH-------
Confidence 67888899999876532 11111 111110
Q ss_pred ccccCCChhHHHHHHhcccccccEEEEEecCCcCCH----HHHHHHh-cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 221 TLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL----EELEILD-KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 221 ~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~----~~l~~l~-~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
... ....|++++.||+|+... +...... .....+.+||+++.|++++...+...+
T Consensus 108 -----------~~~----~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 108 -----------VRV----CENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred -----------HHh----CCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000 012699999999998632 1111111 123578999999999999888887654
No 472
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=8.7e-11 Score=109.16 Aligned_cols=126 Identities=13% Similarity=0.143 Sum_probs=68.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||+|||||+++|+|...+.+..+ ..|.+.++|.++..... ... ......+...+.
T Consensus 25 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~------~~G~i~~~g~~i~~~~~-~~~-~~~~~i~~~~q~ 96 (261)
T PRK14258 25 GVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR------VEGRVEFFNQNIYERRV-NLN-RLRRQVSMVHPK 96 (261)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCcc------ccceEEECCEEhhcccc-chH-HhhccEEEEecC
Confidence 3444444458999999999999999999999876521111 35788888766431100 000 000111111111
Q ss_pred hcccCCcchhHHHH---h--cCCCh-HHHHHHHHHHHhccc------ccccCcCcccceeeccccce
Q 016864 137 ISTARTCNCILIVL---D--AIKPI-THKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 137 ~~~~~~~d~il~vv---d--~~~~~-~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~ 191 (381)
...+. .++.-.+. . ...+. ...+.+...++.+++ ...+++..||+|+++|..++
T Consensus 97 ~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 162 (261)
T PRK14258 97 PNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162 (261)
T ss_pred CccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 11111 22221111 1 11122 223456667777765 24677899999999996554
No 473
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.17 E-value=8.9e-11 Score=109.53 Aligned_cols=126 Identities=17% Similarity=0.172 Sum_probs=67.5
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++. .+..++|+|+||||||||+++|+|...... ..|..|.+.++|.++.-.. +.. .......++..
T Consensus 39 ~vsl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~i~~~g~~i~~~~-~~~-~~~~~~i~~v~ 108 (268)
T PRK14248 39 DISMDIE--KHAVTALIGPSGCGKSTFLRSINRMNDLIP------SARSEGEILYEGLNILDSN-INV-VNLRREIGMVF 108 (268)
T ss_pred ceEEEEc--CCCEEEEECCCCCCHHHHHHHHHhcccccC------CCCCceEEEECCEEccccc-ccH-HHHhccEEEEe
Confidence 3444444 448999999999999999999999643100 0026799999887653210 000 00011111212
Q ss_pred hhhcccCCcchhHHH---HhcCC--C-hHHHHHHHHHHHhccc------ccccCcCcccceeeccccce
Q 016864 135 QVISTARTCNCILIV---LDAIK--P-ITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~~~--~-~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~ 191 (381)
+....+.. ++.-.+ ..... . ....+.+.+.+..+++ ..++++..||+|+++|..++
T Consensus 109 q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~la 176 (268)
T PRK14248 109 QKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA 176 (268)
T ss_pred cCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHH
Confidence 21111121 222111 11111 1 1123345566666665 24678899999999996654
No 474
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.17 E-value=8.4e-11 Score=102.37 Aligned_cols=47 Identities=28% Similarity=0.394 Sum_probs=38.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEe
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKI 114 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i 114 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++
T Consensus 18 ~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~ 64 (173)
T cd03230 18 DISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-----------DSGEIKVLGKDI 64 (173)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEc
Confidence 33444444589999999999999999999998877 789999988765
No 475
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.16 E-value=5.9e-11 Score=110.87 Aligned_cols=60 Identities=28% Similarity=0.432 Sum_probs=51.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEG 125 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~ 125 (381)
.+|+++|.+|+||||++|+|+|... .++.+..+|..+......++|..+.++||||+.+.
T Consensus 39 ~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 39 LTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 7999999999999999999999875 45677777777666666678999999999999875
No 476
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=9.1e-11 Score=108.91 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=67.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+..++ +..|.+.++|.++.-.+.. . .......++..+.
T Consensus 30 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~------~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v~q~ 101 (259)
T PRK14274 30 NINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNV------KLTGEMNYNGSNILKGKVD-L-VELRKNIGMVFQK 101 (259)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCC------CCceEEEECCEEccccccC-H-HHHhhceEEEecC
Confidence 334444445899999999999999999999986420000 1368999988765321100 0 0001111111121
Q ss_pred hcccCCcchhHHH---HhcC---CChHHHHHHHHHHHhccc------ccccCcCcccceeeccccce
Q 016864 137 ISTARTCNCILIV---LDAI---KPITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~~---~~~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~ 191 (381)
...+.. ++.-.+ .... ......+.+...++.+++ .+.+.+..||+|+++|..++
T Consensus 102 ~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la 167 (259)
T PRK14274 102 GNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA 167 (259)
T ss_pred Cccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 111111 222111 1111 111123345556666665 24678899999999996654
No 477
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=1.1e-10 Score=108.22 Aligned_cols=127 Identities=17% Similarity=0.173 Sum_probs=68.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+..+. +..|.+.++|..+.-.+. ... ......++..+.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~------~~~G~i~~~g~~i~~~~~-~~~-~~~~~i~~v~q~ 101 (258)
T PRK14268 30 NVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC------RIEGKVSIEGEDIYEPDV-DVV-ELRKNVGMVFQK 101 (258)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCC------CcceEEEECCEEcccccc-hHH-HHhhhEEEEecC
Confidence 344444445899999999999999999999986431000 157888888876532110 000 000111111111
Q ss_pred hcccC--CcchhHHHHhcC-CC-hHHHHHHHHHHHhccc------ccccCcCcccceeeccccce
Q 016864 137 ISTAR--TCNCILIVLDAI-KP-ITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 137 ~~~~~--~~d~il~vvd~~-~~-~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~ 191 (381)
...+. ..+-+.+..... .. ....+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 102 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 166 (258)
T PRK14268 102 PNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIA 166 (258)
T ss_pred CccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHH
Confidence 11111 111122111111 11 1223345667777765 25678899999999996665
No 478
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=1.1e-10 Score=107.81 Aligned_cols=143 Identities=17% Similarity=0.117 Sum_probs=76.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++. .+..++|+|+||+|||||+++|+|...+... .+..|.+.++|.++.-. .+.... .....++..
T Consensus 22 ~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~------~~~~G~i~~~g~~i~~~-~~~~~~-~~~~i~~~~ 91 (251)
T PRK14270 22 DINLPIY--ENKITALIGPSGCGKSTFLRCLNRMNDLISN------VKIEGEVLLDGKNIYDK-DVDVVE-LRKRVGMVF 91 (251)
T ss_pred ceeEEEc--CCCEEEEECCCCCCHHHHHHHHHhccCcccC------CCCccEEEECCEecccc-cccHHH-HHhheEEEe
Confidence 3444444 4489999999999999999999997643100 01568888888765321 111000 001111111
Q ss_pred hhhcccCCcchhHHHH---hcC---CChHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------ee
Q 016864 135 QVISTARTCNCILIVL---DAI---KPITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv---d~~---~~~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
+...... .++.-.+. ... ......+.+...++.+++ ...+++..||+|+++|..++ +.
T Consensus 92 q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 170 (251)
T PRK14270 92 QKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVIL 170 (251)
T ss_pred cCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111111 22221111 111 111223445566777765 25678899999999997665 44
Q ss_pred ecccCCCCCHHHHHH
Q 016864 194 STVTNTNLDLDTVKA 208 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~ 208 (381)
+|||++++|......
T Consensus 171 lDEP~~~LD~~~~~~ 185 (251)
T PRK14270 171 MDEPTSALDPISTLK 185 (251)
T ss_pred EeCCcccCCHHHHHH
Confidence 455555555544433
No 479
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.16 E-value=6.2e-11 Score=109.60 Aligned_cols=131 Identities=19% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEE-----------EcCEEeeecCcccccccccCCCcc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVIT-----------YRGAKIQLLDLPGIIEGAKDGKGR 132 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~-----------~~g~~i~l~DtpG~~~~~~~~~~~ 132 (381)
.+.+++|+|+||||||||+++|+|...+ ..|.+. ++|..+.-... -.... ......
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-----------~~G~I~~~~~~~~~~~~~~g~~~~~~~~-~~~~~-~~~i~~ 91 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKP-----------NLGKFDDPPDWDEILDEFRGSELQNYFT-KLLEG-DVKVIV 91 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEeeccccchhhhhccCchhhhhhH-Hhhhc-ccceee
Confidence 3489999999999999999999999887 778775 33332211000 00000 000001
Q ss_pred hhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 133 GRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 133 ~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
..+...... ..+...+.+..........+.+.++.+++ ..++.+..||+|+++|..++ +.+|||++++
T Consensus 92 ~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~L 170 (255)
T cd03236 92 KPQYVDLIP-KAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYL 170 (255)
T ss_pred ecchhccCc-hHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 111111111 01101111111112234556778888888 46778899999999997665 5556666666
Q ss_pred CHHHHHH
Q 016864 202 DLDTVKA 208 (381)
Q Consensus 202 ~~~~v~~ 208 (381)
|......
T Consensus 171 D~~~~~~ 177 (255)
T cd03236 171 DIKQRLN 177 (255)
T ss_pred CHHHHHH
Confidence 6654443
No 480
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.16 E-value=2.4e-10 Score=105.59 Aligned_cols=139 Identities=20% Similarity=0.237 Sum_probs=76.9
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhccc--ccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTF--SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGR 132 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~--~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~ 132 (381)
+.+|++. .+..++|+|+||||||||+++|+|.. .+ ..|.+.++|.++.-.+. .... ..+...
T Consensus 25 ~vs~~i~--~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-----------~~G~i~~~g~~~~~~~~-~~~~--~~~~~~ 88 (252)
T CHL00131 25 GLNLSIN--KGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-----------LEGDILFKGESILDLEP-EERA--HLGIFL 88 (252)
T ss_pred cceeEEc--CCcEEEEECCCCCCHHHHHHHHcCCCcCcC-----------CCceEEECCEEcccCCh-hhhh--eeeEEE
Confidence 3445544 44899999999999999999999962 34 78989888876543221 0000 001111
Q ss_pred hhhhhcccCCcchhHHH---Hhc-------C--CChHHHHHHHHHHHhcccc---cccCcC-cccceeeccccce-----
Q 016864 133 GRQVISTARTCNCILIV---LDA-------I--KPITHKRLIEKELEGFGIR---LNKQPP-NLTFRKKDKGGIN----- 191 (381)
Q Consensus 133 ~~~~~~~~~~~d~il~v---vd~-------~--~~~~~~~~i~~~l~~~~~~---~~~~~~-~ls~~~~~r~~~~----- 191 (381)
..+.....+..++.-++ ... . ......+.+.+.++.+++. ..+.+. .||+|+++|..++
T Consensus 89 ~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 168 (252)
T CHL00131 89 AFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALL 168 (252)
T ss_pred EeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHc
Confidence 11111111222221111 110 0 0111234566778888873 456666 4999999997665
Q ss_pred ----eeecccCCCCCHHHHHHH
Q 016864 192 ----FTSTVTNTNLDLDTVKAI 209 (381)
Q Consensus 192 ----i~~~~~~~~l~~~~v~~~ 209 (381)
+.+|||++++|......+
T Consensus 169 ~p~llllDEPt~~LD~~~~~~l 190 (252)
T CHL00131 169 DSELAILDETDSGLDIDALKII 190 (252)
T ss_pred CCCEEEEcCCcccCCHHHHHHH
Confidence 445555555555544433
No 481
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=2.9e-10 Score=97.33 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=102.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+++++|..++|||||++..+-....-.-.+-..+|...-.+.+.|. .++++||+|.-.+.. -.-+.++++
T Consensus 23 ~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrs-------lipsY~Rds 95 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDS 95 (221)
T ss_pred EEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhh-------hhhhhccCC
Confidence 69999999999999999999754322222233445666677777764 678999999755421 122367999
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
++++.|.|..+... .+...++|+...-.+
T Consensus 96 ~vaviVyDit~~~S---------------------------------------------fe~t~kWi~dv~~e~------ 124 (221)
T KOG0094|consen 96 SVAVIVYDITDRNS---------------------------------------------FENTSKWIEDVRRER------ 124 (221)
T ss_pred eEEEEEEeccccch---------------------------------------------HHHHHHHHHHHHhcc------
Confidence 99999999876521 122333333321111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH-----HHHh-cC-CCeeeecccccccHHHHHHHHHHHcCCcE
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL-----EILD-KL-PHYCPVSAHLEWNLDGLLEKIWEYLNLTR 294 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l-----~~l~-~~-~~~v~vSa~~~~gl~~L~~~i~~~l~~~~ 294 (381)
.....-+++|.||.||.+..++ +... +. .-.+.+||+.|+++.+|+.+|...++...
T Consensus 125 --------------gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 125 --------------GSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred --------------CCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCcc
Confidence 0001345666799999976543 1111 12 24578899999999999999988876443
No 482
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=1e-10 Score=108.05 Aligned_cols=142 Identities=18% Similarity=0.191 Sum_probs=74.2
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++. .+..++|+|+||||||||+++|+|...+... .+..|.+.++|.++.-.+. .. .......+...
T Consensus 22 ~~sl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~------~~~~G~v~i~g~~~~~~~~-~~-~~~~~~i~~~~ 91 (251)
T PRK14251 22 GISLDFE--EKELTALIGPSGCGKSTFLRCLNRMNDDIEN------IKITGEIKFEGQNIYGSKM-DL-VELRKEVGMVF 91 (251)
T ss_pred eeeEEEc--CCCEEEEECCCCCCHHHHHHHHhhccccccC------CCcceEEEECCEEcccccc-hH-HHhhccEEEEe
Confidence 3444544 4489999999999999999999998641000 0157888888876531100 00 00001111111
Q ss_pred hhhcccC--CcchhHHHHhcC---CChHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------eee
Q 016864 135 QVISTAR--TCNCILIVLDAI---KPITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 135 ~~~~~~~--~~d~il~vvd~~---~~~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
+....+. ..+-+.+..... .+....+.+...++.+++ ..++++..||+|+++|..++ +.+
T Consensus 92 q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llll 171 (251)
T PRK14251 92 QQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLL 171 (251)
T ss_pred cCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 1111111 111122111111 111122445566777766 24678899999999996665 444
Q ss_pred cccCCCCCHHHH
Q 016864 195 TVTNTNLDLDTV 206 (381)
Q Consensus 195 ~~~~~~l~~~~v 206 (381)
|||++++|....
T Consensus 172 DEP~~~LD~~~~ 183 (251)
T PRK14251 172 DEPTSALDPISS 183 (251)
T ss_pred cCCCccCCHHHH
Confidence 455555544433
No 483
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=1.5e-10 Score=108.55 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=90.1
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.++++. .+..++|+|+||+|||||+++|+|...+ ..|.+.++|..+.-.+.. . .....++..
T Consensus 25 ~v~l~i~--~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~i~~~~~~---~-~~~~i~~v~ 87 (277)
T PRK13642 25 GVSFSIT--KGEWVSIIGQNGSGKSTTARLIDGLFEE-----------FEGKVKIDGELLTAENVW---N-LRRKIGMVF 87 (277)
T ss_pred eeEEEEc--CCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCEEEECCEECCcCCHH---H-HhcceEEEE
Confidence 3444544 4489999999999999999999999877 889999998765321110 0 011112212
Q ss_pred hhhc-ccCCcchhHHH---Hh-c-CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 135 QVIS-TARTCNCILIV---LD-A-IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 135 ~~~~-~~~~~d~il~v---vd-~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
+... .+...++.-.+ .. . .......+.+...++.+++ ..++++..||+|+++|..++ +.+|||
T Consensus 88 q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEP 167 (277)
T PRK13642 88 QNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDES 167 (277)
T ss_pred ECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2110 11222332222 11 1 1112223456677777787 56778899999999998887 788999
Q ss_pred CCCCCHHHHHHHHHH
Q 016864 198 NTNLDLDTVKAICSE 212 (381)
Q Consensus 198 ~~~l~~~~v~~~l~~ 212 (381)
++++|......+++.
T Consensus 168 t~~LD~~~~~~l~~~ 182 (277)
T PRK13642 168 TSMLDPTGRQEIMRV 182 (277)
T ss_pred cccCCHHHHHHHHHH
Confidence 999999877766554
No 484
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=2.1e-10 Score=107.44 Aligned_cols=141 Identities=19% Similarity=0.195 Sum_probs=77.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeec-CcccccccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLL-DLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~-DtpG~~~~~~~~~~~~~~ 135 (381)
++++....+..++|+|+||+|||||+++|+|...+.+.. +..|.+.++|.++.-. +.+.. ....++..+
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~------~~~G~i~~~g~~i~~~~~~~~~----~~~i~~v~q 108 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGY------RYSGDVLLGGRSIFNYRDVLEF----RRRVGMLFQ 108 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCC------CCceEEEECCEEccccchhHHH----hhheEEecc
Confidence 334444445899999999999999999999986541111 2578999988765311 11110 011111111
Q ss_pred hhcccCCcchhHHH---HhcCC--C-hHHHHHHHHHHHhcccc------cccCcCcccceeeccccce---------eee
Q 016864 136 VISTARTCNCILIV---LDAIK--P-ITHKRLIEKELEGFGIR------LNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 136 ~~~~~~~~d~il~v---vd~~~--~-~~~~~~i~~~l~~~~~~------~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
...... .++.-.+ ..... . ......+.+.++.+++. +.+.+..||+|+++|..++ +.+
T Consensus 109 ~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllL 187 (276)
T PRK14271 109 RPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLL 187 (276)
T ss_pred CCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111111 2222111 11111 1 12223345566777762 4567889999999997665 445
Q ss_pred cccCCCCCHHHHHH
Q 016864 195 TVTNTNLDLDTVKA 208 (381)
Q Consensus 195 ~~~~~~l~~~~v~~ 208 (381)
|||++++|......
T Consensus 188 DEPt~~LD~~~~~~ 201 (276)
T PRK14271 188 DEPTSALDPTTTEK 201 (276)
T ss_pred cCCcccCCHHHHHH
Confidence 55655555544443
No 485
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.15 E-value=1.2e-10 Score=107.27 Aligned_cols=47 Identities=26% Similarity=0.422 Sum_probs=37.5
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhccc--ccccccccceeeeecEEEEEcCEEe
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTF--SEVASYEFTTLTCIPGVITYRGAKI 114 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~--~~~~~~~~tT~~~~~g~i~~~g~~i 114 (381)
+.++++. .+..++|+|+||||||||+++|+|.. .+ ..|.+.++|.++
T Consensus 19 ~isl~i~--~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----------~~G~i~~~g~~~ 67 (248)
T PRK09580 19 GLNLEVR--PGEVHAIMGPNGSGKSTLSATLAGREDYEV-----------TGGTVEFKGKDL 67 (248)
T ss_pred cceeEEc--CCCEEEEECCCCCCHHHHHHHHcCCccCCC-----------CceEEEECCCcc
Confidence 3444444 44899999999999999999999984 35 789998888654
No 486
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.14 E-value=2.8e-10 Score=102.80 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=38.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEee
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQ 115 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~ 115 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|.++.
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~ 66 (218)
T cd03290 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-----------LEGKVHWSNKNES 66 (218)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCeEEECCcccc
Confidence 44444444589999999999999999999999876 7888888876553
No 487
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.14 E-value=2.4e-10 Score=106.50 Aligned_cols=144 Identities=19% Similarity=0.223 Sum_probs=80.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+... .+..|.+.++|.++.-.+.+ .. ......++..+.
T Consensus 38 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~~~~~~~~-~~-~~~~~i~~v~q~ 109 (267)
T PRK14237 38 GIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDI------ARVTGQILYRGIDINRKEIN-VY-EMRKHIGMVFQR 109 (267)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCC------CCcceEEEECCEEcccccCC-hH-HHhcceEEEecC
Confidence 44444545589999999999999999999998643100 02679999988765321100 00 001111111121
Q ss_pred hcccCCcchhHHH---HhcC--CC-hHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------eeec
Q 016864 137 ISTARTCNCILIV---LDAI--KP-ITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~~--~~-~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
...+. .++.-.+ .... .. ......+.+.++.+++ ...+++..||+|+++|..++ +.+|
T Consensus 110 ~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 188 (267)
T PRK14237 110 PNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMD 188 (267)
T ss_pred Ccccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11111 1221111 1111 11 1223445666777766 25678899999999997665 5556
Q ss_pred ccCCCCCHHHHHHH
Q 016864 196 VTNTNLDLDTVKAI 209 (381)
Q Consensus 196 ~~~~~l~~~~v~~~ 209 (381)
||++++|......+
T Consensus 189 EPt~~LD~~~~~~l 202 (267)
T PRK14237 189 EPASALDPISTMQL 202 (267)
T ss_pred CCcccCCHHHHHHH
Confidence 66666666554443
No 488
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=3.5e-10 Score=96.73 Aligned_cols=153 Identities=21% Similarity=0.193 Sum_probs=93.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceee--eecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLT--CIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTAR 141 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~--~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 141 (381)
.+|+|+|..|+|||||+-+..-..-. .... .|+. ...-.+..++ ..+.++||+|.-...+- .. ...+
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~-e~~e-~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sl-----ap--MYyR 76 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVKDQFH-ENIE-PTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSL-----AP--MYYR 76 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhhCccc-cccc-cccccEEEEEEEEeCCcEEEEEEEEcCCccccccc-----cc--ceec
Confidence 58999999999999998887543211 0000 0111 1112334444 56779999997653221 11 1458
Q ss_pred CcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccc
Q 016864 142 TCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADIT 221 (381)
Q Consensus 142 ~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 221 (381)
+++++++|.|..+... . ...+.++++|.-..
T Consensus 77 gA~AAivvYDit~~~S-F--------------------------------------------~~aK~WvkeL~~~~---- 107 (200)
T KOG0092|consen 77 GANAAIVVYDITDEES-F--------------------------------------------EKAKNWVKELQRQA---- 107 (200)
T ss_pred CCcEEEEEEecccHHH-H--------------------------------------------HHHHHHHHHHHhhC----
Confidence 9999999999987532 1 12233333332110
Q ss_pred cccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhcC--CCeeeecccccccHHHHHHHHHHHcCCc
Q 016864 222 LRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDKL--PHYCPVSAHLEWNLDGLLEKIWEYLNLT 293 (381)
Q Consensus 222 ~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~~--~~~v~vSa~~~~gl~~L~~~i~~~l~~~ 293 (381)
....-+-+|.||+|+... ++.+.+.+. ..++.+||+++.++++++..|.+.++..
T Consensus 108 -----------------~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 108 -----------------SPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred -----------------CCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCc
Confidence 001234456799999863 233333333 3467789999999999999999988643
No 489
>PLN03073 ABC transporter F family; Provisional
Probab=99.14 E-value=3.5e-11 Score=126.08 Aligned_cols=32 Identities=31% Similarity=0.309 Sum_probs=26.3
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhccc
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
+++....+.++||||+||||||||+++|+|..
T Consensus 196 isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 196 ASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 33444445899999999999999999999963
No 490
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.13 E-value=1.1e-10 Score=113.99 Aligned_cols=191 Identities=20% Similarity=0.182 Sum_probs=114.8
Q ss_pred EEecCCcEEEEEcCCCCchHHHHHHHhcccccccccc---cceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 60 VTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYE---FTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 60 ~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~---~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++...+.+.||+|+||+||||++++|+|...|+.+.. +-+.+..+.. ...+..++++-.-+.. ......+.
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~----~~av~~v~~~~~~e~~--rle~~~E~ 169 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE----KQAVQAVVMETDHERK--RLEYLAED 169 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch----HHHHHHHhhhhHHHHH--HHHHHHHH
Confidence 3444458999999999999999999999987733211 0011000000 0111111111000000 00000000
Q ss_pred hc-ccC--Ccchh---HHHHhcCCChHHHHHHHHHHHhccc---ccccCcCcccceeeccccceeeecccCCCCCHHHHH
Q 016864 137 IS-TAR--TCNCI---LIVLDAIKPITHKRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVK 207 (381)
Q Consensus 137 ~~-~~~--~~d~i---l~vvd~~~~~~~~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~ 207 (381)
+. ... ..|-+ .--.|..++..-..++..+|...|+ ...+....+|+|.+.|
T Consensus 170 l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR-------------------- 229 (614)
T KOG0927|consen 170 LAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMR-------------------- 229 (614)
T ss_pred HHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHH--------------------
Confidence 00 001 11111 1122333343444556677777777 6788899999999988
Q ss_pred HHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHH-HhcCCC-eeeecccccccHHHHHHH
Q 016864 208 AICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEI-LDKLPH-YCPVSAHLEWNLDGLLEK 285 (381)
Q Consensus 208 ~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~-l~~~~~-~v~vSa~~~~gl~~L~~~ 285 (381)
..|.+..+...+++++|||| |++|+....|++. +..+.. ++++++|...++..++..
T Consensus 230 ~aLAr~Lf~kP~LLLLDEPt---------------------nhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~ 288 (614)
T KOG0927|consen 230 AALARALFQKPDLLLLDEPT---------------------NHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTN 288 (614)
T ss_pred HHHHHHHhcCCCEEEecCCc---------------------cCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhh
Confidence 44555556778888889888 9999999999965 466766 689999999999999999
Q ss_pred HHHHcCCc-EEEe
Q 016864 286 IWEYLNLT-RIYT 297 (381)
Q Consensus 286 i~~~l~~~-~~~~ 297 (381)
|.+.-... ..|.
T Consensus 289 Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 289 IIHLDNKKLIYYE 301 (614)
T ss_pred hheecccceeeec
Confidence 99866544 3344
No 491
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.13 E-value=1.6e-10 Score=106.98 Aligned_cols=138 Identities=17% Similarity=0.096 Sum_probs=77.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+.. .+..|.+.++|.++...+. . ....++..+.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~G~i~~~g~~i~~~~~---~---~~~i~~v~q~ 87 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGV-------RQTAGRVLLDGKPVAPCAL---R---GRKIATIMQN 87 (254)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-------CCcCCEEEECCeecccccc---c---cceEEEEecC
Confidence 4444444458999999999999999999999864410 1156888888876531110 0 0011111111
Q ss_pred hc--ccCCcchhHHH---HhcCCChHHHHHHHHHHHhcccc-----cccCcCcccceeeccccce---------eeeccc
Q 016864 137 IS--TARTCNCILIV---LDAIKPITHKRLIEKELEGFGIR-----LNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 137 ~~--~~~~~d~il~v---vd~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
.. ..+..++.-.+ ..........+.+.+.++.+++. .++.+..||+|+++|..++ +.+|||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEP 167 (254)
T PRK10418 88 PRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEP 167 (254)
T ss_pred CccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 00 00111211111 11111112335677788888883 4778899999999997765 445555
Q ss_pred CCCCCHHHHH
Q 016864 198 NTNLDLDTVK 207 (381)
Q Consensus 198 ~~~l~~~~v~ 207 (381)
++++|.....
T Consensus 168 t~~LD~~~~~ 177 (254)
T PRK10418 168 TTDLDVVAQA 177 (254)
T ss_pred CcccCHHHHH
Confidence 5555554433
No 492
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.13 E-value=3.1e-10 Score=103.12 Aligned_cols=138 Identities=15% Similarity=0.139 Sum_probs=84.3
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccc---cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFS---EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG 131 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~---~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~ 131 (381)
+.++++. .+..++|+|+||||||||+++|+|... + ..|.+.++|.++... ......+
T Consensus 25 ~vsl~i~--~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~-----------~~G~i~~~g~~~~~~-------~~~~~i~ 84 (226)
T cd03234 25 DVSLHVE--SGQVMAILGSSGSGKTTLLDAISGRVEGGGT-----------TSGQILFNGQPRKPD-------QFQKCVA 84 (226)
T ss_pred CceEEEc--CCeEEEEECCCCCCHHHHHHHHhCccCCCCC-----------CceEEEECCEECChH-------HhcccEE
Confidence 3444444 448999999999999999999999876 5 789999888764210 0111112
Q ss_pred chhhhhcccCCcchhHHHH---h-cC-C--Ch-HHHHHHHH-HHHhccc--ccccCcCcccceeeccccce---------
Q 016864 132 RGRQVISTARTCNCILIVL---D-AI-K--PI-THKRLIEK-ELEGFGI--RLNKQPPNLTFRKKDKGGIN--------- 191 (381)
Q Consensus 132 ~~~~~~~~~~~~d~il~vv---d-~~-~--~~-~~~~~i~~-~l~~~~~--~~~~~~~~ls~~~~~r~~~~--------- 191 (381)
...+....+...++.-.+. . .. . .. .....+.. .+..+++ ..++.+..||+|+++|..++
T Consensus 85 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~i 164 (226)
T cd03234 85 YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKV 164 (226)
T ss_pred EeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCE
Confidence 2222211222222221111 1 10 0 11 11122333 6777776 35677899999999998876
Q ss_pred eeecccCCCCCHHHHHHHHHH
Q 016864 192 FTSTVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 192 i~~~~~~~~l~~~~v~~~l~~ 212 (381)
+.+|||++++|......+++.
T Consensus 165 lllDEP~~gLD~~~~~~~~~~ 185 (226)
T cd03234 165 LILDEPTSGLDSFTALNLVST 185 (226)
T ss_pred EEEeCCCcCCCHHHHHHHHHH
Confidence 777999999998776655543
No 493
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.13 E-value=2e-10 Score=106.04 Aligned_cols=142 Identities=20% Similarity=0.199 Sum_probs=75.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+... .+..|.+.++|.++.-.+.+ . .......++..+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~~~q~ 92 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS------VKIEGEVLLDGQDIYKSDID-V-NQLRKRVGMVFQQ 92 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCC------CCCceEEEECCEEccccccc-h-HHHhccEEEEecC
Confidence 33444444489999999999999999999997542100 01479999988765311000 0 0000111111111
Q ss_pred hcccCCcchhHHH---HhcC--CC-hHHHHHHHHHHHhccc------ccccCcCcccceeeccccce---------eeec
Q 016864 137 ISTARTCNCILIV---LDAI--KP-ITHKRLIEKELEGFGI------RLNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~~--~~-~~~~~~i~~~l~~~~~------~~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
...+. .++.-.+ .... .+ ....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|
T Consensus 93 ~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (250)
T PRK14240 93 PNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMD 171 (250)
T ss_pred CccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11111 2222111 1111 11 1223455666666664 24677899999999997665 4445
Q ss_pred ccCCCCCHHHHH
Q 016864 196 VTNTNLDLDTVK 207 (381)
Q Consensus 196 ~~~~~l~~~~v~ 207 (381)
||++++|.....
T Consensus 172 EP~~~LD~~~~~ 183 (250)
T PRK14240 172 EPTSALDPISTL 183 (250)
T ss_pred CCCccCCHHHHH
Confidence 555555554443
No 494
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=2.2e-10 Score=106.17 Aligned_cols=138 Identities=20% Similarity=0.197 Sum_probs=72.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEee-ecCcccccc-cccCCCcchh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQ-LLDLPGIIE-GAKDGKGRGR 134 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~-l~DtpG~~~-~~~~~~~~~~ 134 (381)
++++....+..++|+|+||+|||||+++|+|...+ ..|.+.++|.-+. -.|...... ......++..
T Consensus 28 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~-----------~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~ 96 (257)
T PRK14246 28 DITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI-----------YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVF 96 (257)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CcCceeEcCEEEECCcccccCCHHHHhcceEEEc
Confidence 34444444589999999999999999999998776 4544444432110 011110000 0011111112
Q ss_pred hhhcccCCcchhHHH---Hhc--CCC-hHHHHHHHHHHHhcccc------cccCcCcccceeeccccce---------ee
Q 016864 135 QVISTARTCNCILIV---LDA--IKP-ITHKRLIEKELEGFGIR------LNKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 135 ~~~~~~~~~d~il~v---vd~--~~~-~~~~~~i~~~l~~~~~~------~~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
+........++.-.+ ... ..+ ......+.+.++.+++. .+..+..||+|+++|..++ +.
T Consensus 97 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~lll 176 (257)
T PRK14246 97 QQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLL 176 (257)
T ss_pred cCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 211122222332111 111 111 22234566777777762 4678899999999996665 44
Q ss_pred ecccCCCCCHHH
Q 016864 194 STVTNTNLDLDT 205 (381)
Q Consensus 194 ~~~~~~~l~~~~ 205 (381)
+|||+.++|...
T Consensus 177 lDEPt~~LD~~~ 188 (257)
T PRK14246 177 MDEPTSMIDIVN 188 (257)
T ss_pred EcCCCccCCHHH
Confidence 455555555443
No 495
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1.3e-10 Score=108.50 Aligned_cols=52 Identities=25% Similarity=0.378 Sum_probs=38.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEe
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKI 114 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i 114 (381)
++++....+..++|+|+||+|||||+++|+|...+... .+..|.+.++|.++
T Consensus 42 ~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~------~~~~G~i~~~g~~~ 93 (271)
T PRK14238 42 NINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPS------VKTTGKILYRDQNI 93 (271)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCC------CCCceeEEECCEEc
Confidence 44444445589999999999999999999998641000 01679999988765
No 496
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.13 E-value=2.8e-10 Score=101.46 Aligned_cols=141 Identities=17% Similarity=0.116 Sum_probs=93.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCc-ccccccccCCCcc---
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDL-PGIIEGAKDGKGR--- 132 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~Dt-pG~~~~~~~~~~~--- 132 (381)
+++...+.+.+-+|+|+||||||||++.++|...+ ..|.+...|.++.=.|+ .-+.+. .|...
T Consensus 49 ~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p-----------ssg~~~~~G~~~G~~~~~~elrk~--IG~vS~~L 115 (257)
T COG1119 49 DLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP-----------SSGDVTLLGRRFGKGETIFELRKR--IGLVSSEL 115 (257)
T ss_pred ccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC-----------CCCceeeeeeeccCCcchHHHHHH--hCccCHHH
Confidence 44555555689999999999999999999999888 67777776776665555 222211 01100
Q ss_pred hhhhhcccCCcchhHHHHhcC----------CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------
Q 016864 133 GRQVISTARTCNCILIVLDAI----------KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN--------- 191 (381)
Q Consensus 133 ~~~~~~~~~~~d~il~vvd~~----------~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~--------- 191 (381)
...+. .+..+.-.|+.+. -...+.+....+++.++. ..++++..||.|+++|.=++
T Consensus 116 ~~~~~---~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~L 192 (257)
T COG1119 116 HERFR---VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPEL 192 (257)
T ss_pred Hhhcc---cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCE
Confidence 01111 1111222222211 114566777888888888 68889999999999997665
Q ss_pred eeecccCCCCCHHHHHHHHHHh
Q 016864 192 FTSTVTNTNLDLDTVKAICSEY 213 (381)
Q Consensus 192 i~~~~~~~~l~~~~v~~~l~~~ 213 (381)
+++|||+.++|....+.+++.+
T Consensus 193 LiLDEP~~GLDl~~re~ll~~l 214 (257)
T COG1119 193 LILDEPAQGLDLIAREQLLNRL 214 (257)
T ss_pred EEecCccccCChHHHHHHHHHH
Confidence 7788898888887776666653
No 497
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.13 E-value=1.2e-10 Score=115.91 Aligned_cols=83 Identities=18% Similarity=0.269 Sum_probs=64.2
Q ss_pred cEEEEEcCCCCchHHHHHHHh---ccccc----------------------c------cccccceeeeecEEEEEcCEEe
Q 016864 66 SRVGLVGFPSVGKSTLLNKLT---GTFSE----------------------V------ASYEFTTLTCIPGVITYRGAKI 114 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~---g~~~~----------------------~------~~~~~tT~~~~~g~i~~~g~~i 114 (381)
..|+++|+.++|||||+-+|+ |.... + .-..+.|++.....+.+++..+
T Consensus 8 ~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i 87 (447)
T PLN00043 8 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYC 87 (447)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEEE
Confidence 689999999999999998885 31100 0 1134778888777778888999
Q ss_pred eecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 115 QLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 115 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.++||||..+.. ..+...+..+|..++|+|+..+
T Consensus 88 ~liDtPGh~df~-------~~~~~g~~~aD~aIlVVda~~G 121 (447)
T PLN00043 88 TVIDAPGHRDFI-------KNMITGTSQADCAVLIIDSTTG 121 (447)
T ss_pred EEEECCCHHHHH-------HHHHhhhhhccEEEEEEEcccC
Confidence 999999986643 4556667899999999999764
No 498
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.13 E-value=1.1e-10 Score=101.81 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEe
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKI 114 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i 114 (381)
.+..++|+|+||||||||+++|+|...+ ..|.+.++|..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i 63 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP-----------NGDNDEWDGITP 63 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC-----------CCcEEEECCEEE
Confidence 3489999999999999999999999887 889999988654
No 499
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.12 E-value=2.4e-10 Score=102.88 Aligned_cols=88 Identities=22% Similarity=0.275 Sum_probs=57.1
Q ss_pred EEEEEcCCCCchHHHHHHHhccccccc--ccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhc----cc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVA--SYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVIS----TA 140 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~--~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~----~~ 140 (381)
+|.|+|.+||||||+.|.|+|.....+ .....|..+......++|..+.++||||+.+..........+... ..
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 799999999999999999999886433 234567788888888999999999999997653221111111111 23
Q ss_pred CCcchhHHHHhcCC
Q 016864 141 RTCNCILIVLDAIK 154 (381)
Q Consensus 141 ~~~d~il~vvd~~~ 154 (381)
+..+++++|+....
T Consensus 82 ~g~ha~llVi~~~r 95 (212)
T PF04548_consen 82 PGPHAFLLVIPLGR 95 (212)
T ss_dssp T-ESEEEEEEETTB
T ss_pred CCCeEEEEEEecCc
Confidence 56777888877663
No 500
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.6e-10 Score=106.67 Aligned_cols=143 Identities=15% Similarity=0.104 Sum_probs=76.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+... .+..|.+.++|.++.-.+.+- .......++..+.
T Consensus 23 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~------~~~~G~i~~~g~~i~~~~~~~--~~~~~~i~~v~q~ 94 (251)
T PRK14244 23 DINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPN------CKVKGELDIDGIDVYSVDTNV--VLLRAKVGMVFQK 94 (251)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCC------CCcceEEEECCEehHhcccch--HHHhhhEEEEecC
Confidence 33444444589999999999999999999998641000 015799999887653221100 0000111111111
Q ss_pred hcccCC--cchhHHHHhcCC---C-hHHHHHHHHHHHhcccc------cccCcCcccceeeccccce---------eeec
Q 016864 137 ISTART--CNCILIVLDAIK---P-ITHKRLIEKELEGFGIR------LNKQPPNLTFRKKDKGGIN---------FTST 195 (381)
Q Consensus 137 ~~~~~~--~d~il~vvd~~~---~-~~~~~~i~~~l~~~~~~------~~~~~~~ls~~~~~r~~~~---------i~~~ 195 (381)
...+.. .+-+.+...... . ....+.+.+.++.+++. ..+.+..||+|+++|..++ +.+|
T Consensus 95 ~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 174 (251)
T PRK14244 95 PNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMD 174 (251)
T ss_pred cccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111111 111111110111 1 12233456677777772 4567889999999996665 4445
Q ss_pred ccCCCCCHHHHH
Q 016864 196 VTNTNLDLDTVK 207 (381)
Q Consensus 196 ~~~~~l~~~~v~ 207 (381)
||++++|.....
T Consensus 175 EPt~~LD~~~~~ 186 (251)
T PRK14244 175 EPCSALDPVATN 186 (251)
T ss_pred CCCccCCHHHHH
Confidence 555555554433
Done!