Query 016864
Match_columns 381
No_of_seqs 329 out of 3750
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 05:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016864.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016864hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a9a_A Ribosome-interacting GT 100.0 1.8E-65 6.2E-70 493.6 28.1 368 1-368 8-376 (376)
2 1wxq_A GTP-binding protein; st 100.0 9.2E-37 3.2E-41 297.5 9.2 290 67-369 2-396 (397)
3 1jal_A YCHF protein; nucleotid 100.0 6.5E-36 2.2E-40 286.3 7.7 285 66-366 3-360 (363)
4 2ohf_A Protein OLA1, GTP-bindi 100.0 7.3E-36 2.5E-40 288.5 7.5 290 66-368 23-388 (396)
5 2dby_A GTP-binding protein; GD 100.0 9.2E-35 3.1E-39 280.0 11.0 284 66-366 2-365 (368)
6 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 2.1E-34 7.3E-39 278.9 9.5 290 65-367 20-389 (392)
7 2qtf_A Protein HFLX, GTP-bindi 99.8 2.5E-21 8.6E-26 186.6 11.8 195 28-291 146-353 (364)
8 1lnz_A SPO0B-associated GTP-bi 99.8 1.2E-21 4E-26 187.1 7.8 162 65-292 158-330 (342)
9 2eki_A DRG 1, developmentally- 99.8 3.2E-21 1.1E-25 145.0 3.9 84 287-370 6-89 (93)
10 1xzp_A Probable tRNA modificat 99.8 6.1E-20 2.1E-24 182.8 12.1 153 66-290 244-403 (482)
11 3gee_A MNME, tRNA modification 99.8 1.3E-20 4.5E-25 187.4 7.2 158 66-291 234-397 (476)
12 1wf3_A GTP-binding protein; GT 99.8 5.7E-20 1.9E-24 172.9 11.1 157 66-291 8-172 (301)
13 3iby_A Ferrous iron transport 99.8 3.8E-20 1.3E-24 170.1 8.8 151 66-289 2-164 (256)
14 1mky_A Probable GTP-binding pr 99.8 9.6E-20 3.3E-24 180.2 10.6 156 66-291 2-165 (439)
15 3geh_A MNME, tRNA modification 99.8 2.1E-20 7.2E-25 185.3 5.2 155 66-292 225-384 (462)
16 3i8s_A Ferrous iron transport 99.8 6.5E-20 2.2E-24 170.3 7.4 154 66-291 4-168 (274)
17 1udx_A The GTP-binding protein 99.8 2E-19 6.7E-24 175.7 11.1 171 57-293 149-326 (416)
18 2gj8_A MNME, tRNA modification 99.8 2.4E-20 8.2E-25 160.8 3.7 158 66-291 5-165 (172)
19 3iev_A GTP-binding protein ERA 99.8 2.5E-19 8.4E-24 169.2 10.1 157 66-291 11-181 (308)
20 1ega_A Protein (GTP-binding pr 99.8 3.6E-19 1.2E-23 167.5 10.3 155 66-291 9-174 (301)
21 2dyk_A GTP-binding protein; GT 99.8 6.3E-19 2.2E-23 149.0 10.8 154 66-290 2-160 (161)
22 2wji_A Ferrous iron transport 99.8 6.7E-19 2.3E-23 150.4 10.1 152 66-290 4-163 (165)
23 3a1s_A Iron(II) transport prot 99.8 9.8E-19 3.4E-23 160.9 10.9 153 66-291 6-166 (258)
24 2e87_A Hypothetical protein PH 99.8 1E-17 3.5E-22 161.3 17.5 163 64-291 166-335 (357)
25 3b1v_A Ferrous iron uptake tra 99.8 4.1E-19 1.4E-23 164.6 6.8 152 66-291 4-163 (272)
26 3k53_A Ferrous iron transport 99.8 1.7E-18 5.9E-23 160.4 10.3 155 66-291 4-165 (271)
27 1mky_A Probable GTP-binding pr 99.8 2.9E-18 9.9E-23 169.6 11.9 156 64-290 179-353 (439)
28 4dhe_A Probable GTP-binding pr 99.8 7.3E-19 2.5E-23 157.3 6.6 158 64-291 28-210 (223)
29 2lkc_A Translation initiation 99.7 9.3E-18 3.2E-22 144.3 13.1 150 65-291 8-170 (178)
30 3tw8_B RAS-related protein RAB 99.7 1.9E-17 6.6E-22 142.4 13.5 151 66-290 10-169 (181)
31 2hjg_A GTP-binding protein ENG 99.7 7.3E-18 2.5E-22 166.6 10.7 157 64-290 174-347 (436)
32 2hjg_A GTP-binding protein ENG 99.7 7.1E-19 2.4E-23 173.9 3.0 155 66-291 4-164 (436)
33 4dcu_A GTP-binding protein ENG 99.7 8.6E-18 2.9E-22 167.0 10.2 156 64-290 194-367 (456)
34 2wjg_A FEOB, ferrous iron tran 99.7 1.8E-17 6E-22 144.1 10.3 153 66-291 8-168 (188)
35 2qu8_A Putative nucleolar GTP- 99.7 2.6E-17 8.8E-22 148.2 11.4 161 65-291 29-204 (228)
36 3lxw_A GTPase IMAP family memb 99.7 1.9E-17 6.4E-22 151.3 9.8 91 65-155 21-118 (247)
37 1m2o_B GTP-binding protein SAR 99.7 1E-16 3.5E-21 140.2 13.3 148 66-289 24-189 (190)
38 3tkl_A RAS-related protein RAB 99.7 1.1E-16 3.8E-21 139.8 13.0 153 66-291 17-178 (196)
39 1zj6_A ADP-ribosylation factor 99.7 9.5E-17 3.2E-21 139.6 12.0 152 66-292 17-178 (187)
40 3tr5_A RF-3, peptide chain rel 99.7 1.2E-17 4.2E-22 168.1 7.1 83 66-155 14-118 (528)
41 4dcu_A GTP-binding protein ENG 99.7 5E-18 1.7E-22 168.7 3.8 156 65-291 23-184 (456)
42 3qq5_A Small GTP-binding prote 99.7 1E-17 3.5E-22 164.0 5.3 156 65-292 34-196 (423)
43 1ksh_A ARF-like protein 2; sma 99.7 1.1E-16 3.9E-21 138.8 11.2 151 65-291 18-179 (186)
44 1svi_A GTP-binding protein YSX 99.7 4.2E-17 1.4E-21 142.5 8.4 155 64-291 22-194 (195)
45 2h17_A ADP-ribosylation factor 99.7 6.2E-17 2.1E-21 140.1 9.4 147 66-288 22-179 (181)
46 1moz_A ARL1, ADP-ribosylation 99.7 7.2E-17 2.5E-21 139.4 9.7 150 66-290 19-178 (183)
47 1upt_A ARL1, ADP-ribosylation 99.7 1.3E-16 4.5E-21 136.0 11.0 149 66-290 8-167 (171)
48 2h57_A ADP-ribosylation factor 99.7 7.3E-17 2.5E-21 140.7 9.5 155 66-291 22-186 (190)
49 3pqc_A Probable GTP-binding pr 99.7 6E-17 2.1E-21 141.1 8.9 154 64-291 22-193 (195)
50 4bas_A ADP-ribosylation factor 99.7 1.4E-16 4.8E-21 139.5 11.3 161 65-291 17-188 (199)
51 1f6b_A SAR1; gtpases, N-termin 99.7 1.7E-16 5.7E-21 139.8 11.8 149 66-290 26-197 (198)
52 1wms_A RAB-9, RAB9, RAS-relate 99.7 4.1E-16 1.4E-20 133.8 14.0 156 66-290 8-172 (177)
53 2bcg_Y Protein YP2, GTP-bindin 99.7 2.5E-16 8.5E-21 139.1 12.8 152 66-290 9-169 (206)
54 2bme_A RAB4A, RAS-related prot 99.7 1.6E-16 5.4E-21 137.7 11.3 152 66-290 11-171 (186)
55 3cph_A RAS-related protein SEC 99.7 2.8E-16 9.5E-21 139.2 12.9 153 65-290 20-180 (213)
56 1r8s_A ADP-ribosylation factor 99.7 1.2E-16 4.1E-21 135.4 10.0 150 67-291 2-161 (164)
57 2xtp_A GTPase IMAP family memb 99.7 1E-16 3.5E-21 147.2 10.0 90 65-154 22-117 (260)
58 1g16_A RAS-related protein SEC 99.7 2.5E-16 8.7E-21 133.9 11.6 152 66-290 4-163 (170)
59 1vg8_A RAS-related protein RAB 99.7 2.8E-16 9.7E-21 138.5 12.2 156 66-290 9-173 (207)
60 2q3h_A RAS homolog gene family 99.7 3.1E-16 1E-20 137.9 12.2 84 65-156 20-105 (201)
61 3reg_A RHO-like small GTPase; 99.7 5.9E-16 2E-20 135.4 13.9 152 66-291 24-187 (194)
62 2y8e_A RAB-protein 6, GH09086P 99.7 3.4E-16 1.2E-20 134.3 12.1 153 66-291 15-176 (179)
63 1z2a_A RAS-related protein RAB 99.7 2.3E-16 7.8E-21 133.9 10.8 151 66-290 6-165 (168)
64 2hxs_A RAB-26, RAS-related pro 99.7 1.7E-16 5.9E-21 136.3 10.2 155 66-291 7-172 (178)
65 2ew1_A RAS-related protein RAB 99.7 3.3E-16 1.1E-20 138.5 12.0 152 66-290 27-187 (201)
66 1ky3_A GTP-binding protein YPT 99.7 4.2E-16 1.4E-20 134.1 12.4 157 65-290 8-176 (182)
67 3lxx_A GTPase IMAP family memb 99.7 8.5E-17 2.9E-21 146.0 8.3 92 64-155 28-125 (239)
68 2fu5_C RAS-related protein RAB 99.7 1.5E-16 5.3E-21 137.5 9.5 152 66-290 9-169 (183)
69 4dsu_A GTPase KRAS, isoform 2B 99.7 4.3E-16 1.5E-20 135.0 12.3 153 66-291 5-165 (189)
70 3t5g_A GTP-binding protein RHE 99.7 5.6E-16 1.9E-20 133.6 13.0 153 66-291 7-168 (181)
71 3clv_A RAB5 protein, putative; 99.7 4.4E-16 1.5E-20 136.3 12.4 151 65-290 7-202 (208)
72 2il1_A RAB12; G-protein, GDP, 99.7 3E-16 1E-20 137.3 10.9 152 66-290 27-188 (192)
73 1ek0_A Protein (GTP-binding pr 99.7 4.4E-16 1.5E-20 132.3 11.5 152 66-290 4-167 (170)
74 1z0j_A RAB-22, RAS-related pro 99.7 1.1E-15 3.6E-20 130.0 13.9 151 66-291 7-168 (170)
75 1z08_A RAS-related protein RAB 99.7 2.7E-16 9.1E-21 133.9 10.0 152 66-290 7-167 (170)
76 2g6b_A RAS-related protein RAB 99.7 8.2E-16 2.8E-20 132.2 13.1 153 66-291 11-173 (180)
77 1zd9_A ADP-ribosylation factor 99.7 2.6E-16 8.9E-21 137.1 10.0 151 66-291 23-184 (188)
78 1wb1_A Translation elongation 99.7 2.5E-16 8.7E-21 157.2 11.1 148 66-291 20-188 (482)
79 2b6h_A ADP-ribosylation factor 99.7 2.3E-16 7.8E-21 138.2 9.4 152 65-291 29-190 (192)
80 2efe_B Small GTP-binding prote 99.7 8.5E-16 2.9E-20 132.3 12.8 153 66-291 13-174 (181)
81 2o52_A RAS-related protein RAB 99.7 2.2E-16 7.6E-21 139.1 9.3 152 66-290 26-186 (200)
82 4gzl_A RAS-related C3 botulinu 99.7 4.1E-16 1.4E-20 137.9 11.0 84 65-156 30-115 (204)
83 2atx_A Small GTP binding prote 99.7 9.1E-16 3.1E-20 134.0 13.1 151 66-290 19-191 (194)
84 1mh1_A RAC1; GTP-binding, GTPa 99.7 6.2E-16 2.1E-20 133.6 11.8 152 66-291 6-179 (186)
85 1u8z_A RAS-related protein RAL 99.7 4.5E-16 1.5E-20 131.8 10.6 152 66-290 5-165 (168)
86 2fn4_A P23, RAS-related protei 99.7 6.7E-16 2.3E-20 132.7 11.9 152 66-290 10-170 (181)
87 3lvq_E ARF-GAP with SH3 domain 99.6 3.4E-16 1.2E-20 157.1 11.4 152 66-292 323-484 (497)
88 3q85_A GTP-binding protein REM 99.6 4.7E-16 1.6E-20 132.4 10.5 154 66-290 3-165 (169)
89 1kao_A RAP2A; GTP-binding prot 99.6 8E-16 2.7E-20 130.1 11.9 152 66-290 4-164 (167)
90 1fzq_A ADP-ribosylation factor 99.6 4.1E-16 1.4E-20 135.1 10.3 151 65-291 16-177 (181)
91 2gf9_A RAS-related protein RAB 99.6 1E-15 3.4E-20 133.3 12.8 152 66-290 23-183 (189)
92 2hup_A RAS-related protein RAB 99.6 3.2E-16 1.1E-20 138.3 9.6 152 66-290 30-191 (201)
93 1r2q_A RAS-related protein RAB 99.6 6.2E-16 2.1E-20 131.4 10.9 153 66-291 7-168 (170)
94 3bc1_A RAS-related protein RAB 99.6 9.4E-16 3.2E-20 133.2 12.2 153 66-290 12-183 (195)
95 3cpj_B GTP-binding protein YPT 99.6 9.3E-16 3.2E-20 137.4 12.4 153 66-291 14-175 (223)
96 2a5j_A RAS-related protein RAB 99.6 9E-16 3.1E-20 133.9 12.0 152 66-290 22-182 (191)
97 2f7s_A C25KG, RAS-related prot 99.6 4.9E-16 1.7E-20 138.3 10.4 153 66-290 26-197 (217)
98 2x77_A ADP-ribosylation factor 99.6 4.4E-16 1.5E-20 135.5 9.7 152 65-291 22-183 (189)
99 3l0i_B RAS-related protein RAB 99.6 7.7E-17 2.6E-21 141.8 4.9 153 66-291 34-195 (199)
100 2bov_A RAla, RAS-related prote 99.6 7.8E-16 2.7E-20 135.5 11.3 152 66-290 15-175 (206)
101 1z0f_A RAB14, member RAS oncog 99.6 6.7E-16 2.3E-20 132.4 10.6 152 66-290 16-176 (179)
102 1c1y_A RAS-related protein RAP 99.6 7.1E-16 2.4E-20 130.7 10.2 152 66-290 4-165 (167)
103 1x3s_A RAS-related protein RAB 99.6 1.4E-15 4.9E-20 132.5 12.2 154 66-291 16-177 (195)
104 2nzj_A GTP-binding protein REM 99.6 2.1E-15 7.1E-20 129.0 13.1 153 66-290 5-167 (175)
105 2oil_A CATX-8, RAS-related pro 99.6 9.9E-16 3.4E-20 133.7 11.2 152 66-290 26-186 (193)
106 2fv8_A H6, RHO-related GTP-bin 99.6 1.2E-15 4.2E-20 135.0 11.8 82 66-155 26-109 (207)
107 2a9k_A RAS-related protein RAL 99.6 1.4E-15 4.7E-20 131.4 11.8 152 66-290 19-179 (187)
108 2fg5_A RAB-22B, RAS-related pr 99.6 1.2E-15 4E-20 133.4 11.1 151 66-291 24-185 (192)
109 1zbd_A Rabphilin-3A; G protein 99.6 2.8E-15 9.7E-20 131.8 13.7 152 66-290 9-169 (203)
110 2j1l_A RHO-related GTP-binding 99.6 1.2E-15 4E-20 136.0 11.3 151 66-290 35-207 (214)
111 3con_A GTPase NRAS; structural 99.6 3.2E-15 1.1E-19 130.0 13.5 153 66-291 22-182 (190)
112 2gco_A H9, RHO-related GTP-bin 99.6 2.7E-15 9.1E-20 132.2 12.9 82 66-155 26-109 (201)
113 3bwd_D RAC-like GTP-binding pr 99.6 4.5E-16 1.5E-20 134.2 7.5 152 65-290 8-179 (182)
114 3q72_A GTP-binding protein RAD 99.6 1E-15 3.4E-20 129.9 9.6 150 66-290 3-162 (166)
115 3oes_A GTPase rhebl1; small GT 99.6 1.9E-15 6.4E-20 133.1 11.4 154 65-291 24-186 (201)
116 3cbq_A GTP-binding protein REM 99.6 2E-15 6.9E-20 132.6 11.1 156 65-291 23-187 (195)
117 3vqt_A RF-3, peptide chain rel 99.6 2.9E-15 9.9E-20 151.5 13.5 112 66-189 32-166 (548)
118 2ce2_X GTPase HRAS; signaling 99.6 3.8E-15 1.3E-19 125.6 12.2 152 66-290 4-163 (166)
119 3kkq_A RAS-related protein M-R 99.6 4.3E-15 1.5E-19 128.3 12.7 152 66-290 19-180 (183)
120 3dz8_A RAS-related protein RAB 99.6 1.7E-15 5.9E-20 132.1 10.1 152 66-290 24-184 (191)
121 2p5s_A RAS and EF-hand domain 99.6 1.6E-15 5.5E-20 133.3 9.8 155 64-291 27-196 (199)
122 2iwr_A Centaurin gamma 1; ANK 99.6 1.6E-15 5.6E-20 130.3 9.6 148 66-290 8-167 (178)
123 1z06_A RAS-related protein RAB 99.6 2.6E-15 8.8E-20 130.7 10.9 154 66-290 21-186 (189)
124 2j0v_A RAC-like GTP-binding pr 99.6 1.8E-15 6.1E-20 134.2 9.9 152 66-291 10-179 (212)
125 3t1o_A Gliding protein MGLA; G 99.6 1.8E-15 6.1E-20 131.9 9.8 154 66-290 15-190 (198)
126 3o47_A ADP-ribosylation factor 99.6 2.9E-15 1E-19 142.5 11.5 152 65-291 165-326 (329)
127 1m7b_A RND3/RHOE small GTP-bin 99.6 5.6E-15 1.9E-19 128.1 11.6 83 66-156 8-92 (184)
128 3izy_P Translation initiation 99.6 2.7E-16 9.2E-21 157.9 3.5 151 65-292 4-168 (537)
129 3r7w_A Gtpase1, GTP-binding pr 99.6 6E-15 2E-19 139.0 12.2 89 66-156 4-94 (307)
130 2yc2_C IFT27, small RAB-relate 99.6 7.2E-16 2.5E-20 135.8 5.5 155 66-290 21-190 (208)
131 3q3j_B RHO-related GTP-binding 99.6 9.9E-15 3.4E-19 130.0 12.8 153 65-291 27-202 (214)
132 2fh5_B SR-beta, signal recogni 99.6 2.9E-15 1E-19 133.0 9.1 81 66-155 8-91 (214)
133 3izq_1 HBS1P, elongation facto 99.6 1.1E-15 3.7E-20 156.5 6.9 84 65-155 167-281 (611)
134 2erx_A GTP-binding protein DI- 99.6 7E-15 2.4E-19 125.0 10.8 154 66-291 4-166 (172)
135 3c5c_A RAS-like protein 12; GD 99.6 9.9E-15 3.4E-19 127.1 11.8 153 66-290 22-184 (187)
136 3ihw_A Centg3; RAS, centaurin, 99.6 7E-15 2.4E-19 127.8 10.7 146 66-290 21-178 (184)
137 3sjy_A Translation initiation 99.6 4.3E-15 1.5E-19 145.3 10.2 150 65-291 8-191 (403)
138 1gwn_A RHO-related GTP-binding 99.6 9.8E-15 3.3E-19 129.3 11.5 83 66-156 29-113 (205)
139 4djt_A GTP-binding nuclear pro 99.6 5.8E-15 2E-19 131.4 10.1 152 66-291 12-174 (218)
140 3j2k_7 ERF3, eukaryotic polype 99.6 3E-15 1E-19 147.8 9.0 85 65-156 17-132 (439)
141 3gj0_A GTP-binding nuclear pro 99.6 7.4E-16 2.5E-20 137.7 3.9 151 66-290 16-173 (221)
142 1kk1_A EIF2gamma; initiation o 99.6 9.8E-15 3.4E-19 143.0 12.2 149 66-291 11-199 (410)
143 2atv_A RERG, RAS-like estrogen 99.6 1.2E-14 4.1E-19 127.3 11.1 152 65-290 28-189 (196)
144 2cxx_A Probable GTP-binding pr 99.6 2.9E-15 9.8E-20 130.0 6.9 54 66-123 2-55 (190)
145 3t5d_A Septin-7; GTP-binding p 99.6 3.3E-15 1.1E-19 138.5 7.4 60 66-125 9-78 (274)
146 2gf0_A GTP-binding protein DI- 99.6 1.6E-14 5.6E-19 126.2 11.5 156 65-292 8-171 (199)
147 3fvq_A Fe(3+) IONS import ATP- 99.6 3.8E-14 1.3E-18 135.3 14.4 142 57-211 22-179 (359)
148 2c78_A Elongation factor TU-A; 99.6 6.8E-15 2.3E-19 143.9 9.3 83 66-155 12-111 (405)
149 3p26_A Elongation factor 1 alp 99.6 3.7E-15 1.3E-19 149.0 7.5 83 66-155 34-147 (483)
150 2f9l_A RAB11B, member RAS onco 99.6 1.4E-14 4.8E-19 127.3 10.4 152 66-290 6-166 (199)
151 2pcj_A ABC transporter, lipopr 99.6 1.5E-14 5.2E-19 130.0 10.8 143 58-211 23-181 (224)
152 3tif_A Uncharacterized ABC tra 99.5 8.3E-15 2.8E-19 132.7 9.0 145 57-212 23-187 (235)
153 3th5_A RAS-related C3 botulinu 99.3 3.7E-16 1.3E-20 137.8 0.0 84 65-156 30-115 (204)
154 2wkq_A NPH1-1, RAS-related C3 99.5 2.3E-14 7.8E-19 135.7 12.0 83 66-156 156-240 (332)
155 3mca_A HBS1, elongation factor 99.5 1.4E-15 4.8E-20 155.3 3.9 84 65-155 177-291 (592)
156 2g3y_A GTP-binding protein GEM 99.5 3.1E-14 1.1E-18 126.8 12.1 154 66-290 38-201 (211)
157 2zej_A Dardarin, leucine-rich 99.5 7.6E-15 2.6E-19 127.4 7.7 153 66-291 3-177 (184)
158 1s0u_A EIF-2-gamma, translatio 99.5 2.9E-14 9.7E-19 139.6 12.6 151 64-291 7-197 (408)
159 2j69_A Bacterial dynamin-like 99.5 1.8E-15 6.1E-20 157.3 4.2 88 65-156 69-214 (695)
160 2aka_B Dynamin-1; fusion prote 99.5 8.9E-16 3E-20 143.6 1.8 49 242-290 193-251 (299)
161 2www_A Methylmalonic aciduria 99.5 7.6E-16 2.6E-20 147.6 1.2 50 242-291 213-278 (349)
162 2olj_A Amino acid ABC transpor 99.5 1.6E-14 5.5E-19 132.8 10.0 142 57-211 42-200 (263)
163 2elf_A Protein translation elo 99.5 5.8E-15 2E-19 142.4 7.4 73 67-155 23-95 (370)
164 1oix_A RAS-related protein RAB 99.5 2.1E-14 7.3E-19 125.5 10.1 152 66-290 30-190 (191)
165 2cjw_A GTP-binding protein GEM 99.5 4.2E-14 1.4E-18 123.8 11.5 154 66-290 7-170 (192)
166 1pui_A ENGB, probable GTP-bind 99.5 1.9E-14 6.5E-19 127.2 9.0 155 64-291 25-198 (210)
167 2ywe_A GTP-binding protein LEP 99.5 3E-14 1E-18 144.9 11.0 150 66-292 7-184 (600)
168 3gfo_A Cobalt import ATP-bindi 99.5 7.9E-14 2.7E-18 129.0 12.6 142 57-211 26-184 (275)
169 1zo1_I IF2, translation initia 99.5 1.3E-15 4.6E-20 151.6 0.6 148 65-289 4-164 (501)
170 1b0u_A Histidine permease; ABC 99.5 3E-14 1E-18 131.0 9.3 143 57-211 24-194 (262)
171 1ji0_A ABC transporter; ATP bi 99.5 5E-14 1.7E-18 127.9 10.6 140 58-211 25-180 (240)
172 3tui_C Methionine import ATP-b 99.5 3.6E-14 1.2E-18 135.6 10.1 144 57-212 46-205 (366)
173 1g6h_A High-affinity branched- 99.5 6.8E-14 2.3E-18 128.4 11.6 142 55-212 25-195 (257)
174 4dkx_A RAS-related protein RAB 99.5 4.2E-14 1.4E-18 126.4 9.7 153 66-291 14-175 (216)
175 3llu_A RAS-related GTP-binding 99.5 7E-14 2.4E-18 122.5 10.7 84 65-155 20-108 (196)
176 1d2e_A Elongation factor TU (E 99.5 4.5E-14 1.6E-18 137.7 9.8 83 66-155 4-102 (397)
177 3cb4_D GTP-binding protein LEP 99.5 4.2E-14 1.4E-18 144.0 9.7 150 66-292 5-182 (599)
178 2onk_A Molybdate/tungstate ABC 99.5 1.5E-13 5.1E-18 124.7 11.9 138 57-212 17-168 (240)
179 2rdo_7 EF-G, elongation factor 99.5 3.8E-14 1.3E-18 147.5 8.3 84 65-155 10-118 (704)
180 1vpl_A ABC transporter, ATP-bi 99.5 1.9E-13 6.6E-18 125.1 12.0 139 57-211 33-187 (256)
181 1zun_B Sulfate adenylate trans 99.5 5E-14 1.7E-18 139.0 8.5 83 66-155 25-140 (434)
182 3rlf_A Maltose/maltodextrin im 99.5 1.2E-13 4E-18 132.9 10.8 139 57-212 21-175 (381)
183 1jwy_B Dynamin A GTPase domain 99.5 1.2E-14 4.3E-19 136.9 3.8 50 242-291 199-261 (315)
184 2qi9_C Vitamin B12 import ATP- 99.5 9.6E-14 3.3E-18 126.6 8.9 118 58-191 19-138 (249)
185 4g1u_C Hemin import ATP-bindin 99.5 4.2E-14 1.4E-18 130.3 6.4 120 55-191 29-153 (266)
186 1jny_A EF-1-alpha, elongation 99.5 4.9E-14 1.7E-18 139.1 7.3 83 66-155 7-120 (435)
187 3dpu_A RAB family protein; roc 99.5 2.4E-14 8.1E-19 145.0 4.9 149 66-291 42-207 (535)
188 2h5e_A Peptide chain release f 99.5 1.4E-13 4.9E-18 138.5 10.6 83 66-155 14-118 (529)
189 1sgw_A Putative ABC transporte 99.5 1.4E-13 4.9E-18 122.5 9.2 130 58-208 28-171 (214)
190 1z47_A CYSA, putative ABC-tran 99.5 2.7E-13 9.1E-18 129.5 11.7 139 57-212 33-187 (355)
191 1g7s_A Translation initiation 99.5 1.3E-13 4.5E-18 140.4 9.7 83 65-155 5-106 (594)
192 1f60_A Elongation factor EEF1A 99.5 5.3E-14 1.8E-18 139.6 6.6 83 66-155 8-121 (458)
193 2ihy_A ABC transporter, ATP-bi 99.4 4.4E-13 1.5E-17 124.3 12.3 141 55-212 39-203 (279)
194 3def_A T7I23.11 protein; chlor 99.4 2E-13 6.9E-18 125.5 9.9 89 66-154 37-128 (262)
195 2yz2_A Putative ABC transporte 99.4 2.3E-13 7.8E-18 125.4 10.0 135 57-211 25-179 (266)
196 1oxx_K GLCV, glucose, ABC tran 99.4 1.5E-13 5.1E-18 131.4 9.0 140 57-211 23-181 (353)
197 1g29_1 MALK, maltose transport 99.4 3.8E-13 1.3E-17 129.4 11.8 140 58-212 22-181 (372)
198 1v43_A Sugar-binding transport 99.4 4.2E-13 1.4E-17 129.0 11.8 139 57-212 29-183 (372)
199 3j25_A Tetracycline resistance 99.4 2.4E-14 8.2E-19 147.6 3.3 113 66-190 3-134 (638)
200 2xex_A Elongation factor G; GT 99.4 1.6E-13 5.5E-18 142.6 9.6 83 66-155 11-111 (693)
201 1h65_A Chloroplast outer envel 99.4 3.8E-13 1.3E-17 124.2 10.7 88 66-153 40-130 (270)
202 2yyz_A Sugar ABC transporter, 99.4 4.6E-13 1.6E-17 128.1 11.3 139 57-212 21-175 (359)
203 2it1_A 362AA long hypothetical 99.4 3.5E-13 1.2E-17 129.1 10.5 139 57-212 21-175 (362)
204 2nq2_C Hypothetical ABC transp 99.4 6.5E-13 2.2E-17 121.5 11.5 126 58-211 24-169 (253)
205 1dar_A EF-G, elongation factor 99.4 3.9E-13 1.4E-17 139.6 11.1 83 66-155 13-113 (691)
206 3d31_A Sulfate/molybdate ABC t 99.4 2.1E-13 7.2E-18 130.0 8.2 137 57-212 18-169 (348)
207 2d2e_A SUFC protein; ABC-ATPas 99.4 8.7E-13 3E-17 120.4 11.4 141 58-212 22-185 (250)
208 2qm8_A GTPase/ATPase; G protei 99.4 7.2E-14 2.5E-18 133.2 4.1 50 242-291 194-260 (337)
209 1r5b_A Eukaryotic peptide chai 99.4 1.1E-13 3.8E-18 137.6 5.3 84 66-156 44-158 (467)
210 2p67_A LAO/AO transport system 99.4 9.9E-14 3.4E-18 132.5 4.0 50 242-291 195-260 (341)
211 3c5h_A Glucocorticoid receptor 99.4 1.4E-12 4.7E-17 119.5 11.4 49 242-290 199-253 (255)
212 2pjz_A Hypothetical protein ST 99.4 5.6E-13 1.9E-17 122.5 8.1 131 57-211 23-169 (263)
213 2zu0_C Probable ATP-dependent 99.4 1.5E-12 5.3E-17 119.9 10.4 142 57-212 38-206 (267)
214 3avx_A Elongation factor TS, e 99.4 7E-13 2.4E-17 141.5 9.1 83 66-155 297-395 (1289)
215 2x2e_A Dynamin-1; nitration, h 99.4 1.8E-13 6.3E-18 131.3 3.9 47 242-288 198-254 (353)
216 4fn5_A EF-G 1, elongation fact 99.4 1.5E-13 5.3E-18 143.3 3.1 113 66-190 14-152 (709)
217 3zvr_A Dynamin-1; hydrolase, D 99.4 3.6E-13 1.2E-17 139.6 5.7 47 242-288 218-274 (772)
218 2ff7_A Alpha-hemolysin translo 99.3 1.5E-12 5E-17 118.7 8.5 139 57-212 27-187 (247)
219 3p32_A Probable GTPase RV1496/ 99.3 1.9E-13 6.4E-18 131.3 2.4 50 242-291 218-283 (355)
220 2dy1_A Elongation factor G; tr 99.3 1.8E-12 6E-17 134.3 9.7 84 65-155 9-110 (665)
221 2ixe_A Antigen peptide transpo 99.3 3.5E-12 1.2E-16 117.8 8.2 140 57-212 37-198 (271)
222 1mv5_A LMRA, multidrug resista 99.3 5.9E-12 2E-16 114.4 9.5 48 57-115 20-67 (243)
223 2ged_A SR-beta, signal recogni 99.3 1.6E-12 5.4E-17 113.1 5.4 79 65-153 48-129 (193)
224 3nh6_A ATP-binding cassette SU 99.3 3.1E-12 1E-16 119.9 6.6 139 57-212 72-232 (306)
225 2qpt_A EH domain-containing pr 99.3 3.3E-12 1.1E-16 129.3 5.7 92 64-155 64-201 (550)
226 3t34_A Dynamin-related protein 99.3 1.8E-11 6.2E-16 117.7 10.6 25 66-90 35-59 (360)
227 2cbz_A Multidrug resistance-as 99.2 1.3E-11 4.5E-16 111.7 8.8 128 57-213 23-170 (237)
228 2wsm_A Hydrogenase expression/ 99.2 6.2E-12 2.1E-16 112.0 6.2 50 242-291 155-213 (221)
229 3ozx_A RNAse L inhibitor; ATP 99.2 3.9E-12 1.3E-16 128.3 4.5 123 64-211 293-426 (538)
230 2ghi_A Transport protein; mult 99.2 3.1E-11 1E-15 110.8 10.1 137 57-211 38-196 (260)
231 2pze_A Cystic fibrosis transme 99.2 4.2E-11 1.4E-15 107.8 10.7 124 57-212 26-172 (229)
232 2qag_A Septin-2, protein NEDD5 99.2 1.6E-11 5.5E-16 118.0 7.4 59 66-124 38-107 (361)
233 1yqt_A RNAse L inhibitor; ATP- 99.2 3E-12 1E-16 129.4 2.2 119 64-210 311-441 (538)
234 3bk7_A ABC transporter ATP-bin 99.2 5.5E-12 1.9E-16 128.9 3.6 120 64-211 381-512 (607)
235 3b5x_A Lipid A export ATP-bind 99.2 4.3E-11 1.5E-15 122.3 9.1 139 57-211 361-521 (582)
236 2qnr_A Septin-2, protein NEDD5 99.2 3.1E-11 1.1E-15 113.1 7.1 168 66-290 19-212 (301)
237 3b60_A Lipid A export ATP-bind 99.2 4.4E-11 1.5E-15 122.1 8.8 139 57-211 361-521 (582)
238 3sop_A Neuronal-specific septi 99.2 1.6E-10 5.4E-15 106.6 11.7 140 66-260 3-159 (270)
239 2bbs_A Cystic fibrosis transme 99.2 6.9E-11 2.4E-15 110.0 9.3 123 57-212 56-201 (290)
240 1n0u_A EF-2, elongation factor 99.2 1.9E-11 6.4E-16 129.6 6.0 84 66-156 20-135 (842)
241 3gd7_A Fusion complex of cysti 99.2 3.5E-11 1.2E-15 116.3 7.2 138 57-213 39-198 (390)
242 1nrj_B SR-beta, signal recogni 99.2 2E-11 6.8E-16 108.3 5.1 78 65-153 12-93 (218)
243 4a82_A Cystic fibrosis transme 99.1 8E-11 2.8E-15 120.1 8.8 138 57-211 359-518 (578)
244 1tq4_A IIGP1, interferon-induc 99.1 6E-11 2.1E-15 115.4 6.4 26 66-91 70-95 (413)
245 3qf4_B Uncharacterized ABC tra 99.1 7.6E-11 2.6E-15 120.7 7.2 138 57-211 373-532 (598)
246 3ec1_A YQEH GTPase; atnos1, at 99.1 7.5E-12 2.6E-16 120.7 -0.9 84 66-152 163-255 (369)
247 1yqt_A RNAse L inhibitor; ATP- 99.1 4.6E-12 1.6E-16 128.0 -2.6 51 161-211 138-199 (538)
248 2yl4_A ATP-binding cassette SU 99.1 2E-10 6.8E-15 117.6 8.8 139 57-211 362-524 (595)
249 1yrb_A ATP(GTP)binding protein 99.1 7.8E-11 2.7E-15 107.7 5.2 50 242-291 172-256 (262)
250 3qf4_A ABC transporter, ATP-bi 99.1 1.8E-10 6.3E-15 117.6 7.9 139 57-212 361-521 (587)
251 3ozx_A RNAse L inhibitor; ATP 99.0 1.8E-11 6.1E-16 123.4 -2.1 50 162-211 119-179 (538)
252 3bk7_A ABC transporter ATP-bin 99.0 1.5E-11 5.2E-16 125.6 -3.1 51 161-211 208-269 (607)
253 3j16_B RLI1P; ribosome recycli 99.0 2.4E-10 8.4E-15 116.6 5.8 117 66-210 379-507 (608)
254 2qag_C Septin-7; cell cycle, c 99.0 7E-10 2.4E-14 108.2 8.6 175 66-291 32-226 (418)
255 3r7w_B Gtpase2, GTP-binding pr 99.0 6.2E-10 2.1E-14 104.6 7.4 84 67-155 1-85 (331)
256 3h2y_A GTPase family protein; 99.0 6.8E-11 2.3E-15 113.9 0.4 57 66-125 161-224 (368)
257 3j16_B RLI1P; ribosome recycli 99.0 1.2E-10 4.2E-15 118.8 1.7 52 160-211 200-262 (608)
258 1puj_A YLQF, conserved hypothe 99.0 3.6E-10 1.2E-14 104.9 4.6 59 65-126 120-179 (282)
259 2iw3_A Elongation factor 3A; a 98.9 4.2E-10 1.4E-14 119.5 3.1 44 57-111 691-734 (986)
260 2iw3_A Elongation factor 3A; a 98.9 2.8E-09 9.7E-14 113.2 8.4 54 159-212 525-590 (986)
261 3g5u_A MCG1178, multidrug resi 98.8 2.8E-09 9.7E-14 117.8 7.6 136 57-209 408-565 (1284)
262 2hf9_A Probable hydrogenase ni 98.8 5.5E-09 1.9E-13 93.0 6.2 49 242-290 165-222 (226)
263 4f4c_A Multidrug resistance pr 98.8 8.5E-09 2.9E-13 114.3 8.9 139 57-211 1097-1258(1321)
264 3g5u_A MCG1178, multidrug resi 98.8 7.3E-09 2.5E-13 114.5 8.3 139 57-211 1051-1212(1284)
265 2qag_B Septin-6, protein NEDD5 98.8 4.9E-09 1.7E-13 102.0 5.6 67 56-124 33-107 (427)
266 1f5n_A Interferon-induced guan 98.8 4.5E-09 1.5E-13 106.4 5.2 60 66-126 39-105 (592)
267 3ux8_A Excinuclease ABC, A sub 98.7 2.5E-08 8.6E-13 103.4 8.2 47 165-211 185-245 (670)
268 4f4c_A Multidrug resistance pr 98.7 4.4E-08 1.5E-12 108.6 10.2 132 57-205 436-589 (1321)
269 3ux8_A Excinuclease ABC, A sub 98.6 1E-07 3.5E-12 98.8 11.0 51 160-210 521-586 (670)
270 2j37_W Signal recognition part 98.6 6E-09 2.1E-13 103.8 1.4 23 64-86 100-122 (504)
271 3cnl_A YLQF, putative uncharac 98.6 2.5E-08 8.6E-13 91.4 4.0 57 66-125 100-157 (262)
272 3b85_A Phosphate starvation-in 98.4 1.6E-07 5.4E-12 82.9 4.8 25 66-91 23-47 (208)
273 2vf7_A UVRA2, excinuclease ABC 98.4 6.2E-07 2.1E-11 94.3 8.7 78 159-277 707-794 (842)
274 3pih_A Uvrabc system protein A 98.4 1.7E-06 5.9E-11 91.7 11.9 52 159-210 782-848 (916)
275 2v3c_C SRP54, signal recogniti 98.3 8.7E-09 3E-13 101.0 -5.6 88 65-155 99-223 (432)
276 2npi_A Protein CLP1; CLP1-PCF1 98.3 4.5E-08 1.5E-12 96.7 -1.8 35 66-111 139-175 (460)
277 3q5d_A Atlastin-1; G protein, 98.2 1.2E-06 4.2E-11 85.8 5.4 60 66-125 68-153 (447)
278 3szr_A Interferon-induced GTP- 98.2 5E-06 1.7E-10 85.0 10.0 43 66-118 46-88 (608)
279 3ney_A 55 kDa erythrocyte memb 98.1 4.8E-07 1.6E-11 79.0 1.6 58 65-124 19-78 (197)
280 2rcn_A Probable GTPase ENGC; Y 98.1 4.9E-07 1.7E-11 86.1 1.3 56 66-124 216-280 (358)
281 4aby_A DNA repair protein RECN 98.1 1E-06 3.5E-11 85.8 3.6 32 57-89 53-84 (415)
282 3aez_A Pantothenate kinase; tr 98.1 1.2E-06 4E-11 82.3 3.3 27 65-91 90-116 (312)
283 2yv5_A YJEQ protein; hydrolase 98.1 8.4E-07 2.9E-11 82.9 2.3 55 66-124 166-228 (302)
284 2r6f_A Excinuclease ABC subuni 98.1 1.2E-05 4E-10 85.2 10.3 29 58-86 643-671 (972)
285 2ygr_A Uvrabc system protein A 98.0 1.1E-05 3.8E-10 85.7 9.8 30 57-86 660-689 (993)
286 1t9h_A YLOQ, probable GTPase E 98.0 8.8E-07 3E-11 82.7 1.1 56 65-124 173-236 (307)
287 1htw_A HI0065; nucleotide-bind 98.0 6.3E-07 2.2E-11 75.5 -0.4 26 65-91 33-58 (158)
288 1u0l_A Probable GTPase ENGC; p 98.0 3.6E-06 1.2E-10 78.5 4.0 26 66-91 170-195 (301)
289 3a00_A Guanylate kinase, GMP k 97.9 2.7E-06 9.2E-11 73.4 1.3 48 66-115 2-51 (186)
290 1kgd_A CASK, peripheral plasma 97.9 4.5E-06 1.5E-10 71.6 2.5 51 66-118 6-58 (180)
291 3dm5_A SRP54, signal recogniti 97.9 4.7E-06 1.6E-10 81.4 2.6 23 65-87 100-122 (443)
292 1cip_A Protein (guanine nucleo 97.8 2.2E-05 7.4E-10 74.8 6.9 47 102-155 183-229 (353)
293 1lvg_A Guanylate kinase, GMP k 97.8 3.5E-06 1.2E-10 73.5 1.3 50 66-117 5-56 (198)
294 3lnc_A Guanylate kinase, GMP k 97.8 4.9E-06 1.7E-10 74.3 1.5 49 55-105 19-69 (231)
295 4fid_A G protein alpha subunit 97.8 4.9E-05 1.7E-09 71.8 8.2 42 105-153 154-195 (340)
296 1e69_A Chromosome segregation 97.8 4.4E-05 1.5E-09 71.7 7.4 28 59-87 19-46 (322)
297 1s96_A Guanylate kinase, GMP k 97.7 1.1E-05 3.9E-10 71.5 2.8 25 66-90 17-41 (219)
298 1puj_A YLQF, conserved hypothe 97.7 6.7E-06 2.3E-10 76.0 1.3 49 242-290 51-104 (282)
299 1zcb_A G alpha I/13; GTP-bindi 97.7 4.6E-05 1.6E-09 72.8 7.1 45 103-154 192-236 (362)
300 4gp7_A Metallophosphoesterase; 97.7 2.1E-05 7.3E-10 66.8 4.3 29 57-87 3-31 (171)
301 3b9q_A Chloroplast SRP recepto 97.7 3.5E-05 1.2E-09 71.8 5.7 39 63-112 98-136 (302)
302 2yhs_A FTSY, cell division pro 97.7 5.9E-05 2E-09 74.4 7.2 38 63-111 291-328 (503)
303 1z6g_A Guanylate kinase; struc 97.7 1.6E-05 5.5E-10 70.4 2.8 33 55-89 15-47 (218)
304 3euj_A Chromosome partition pr 97.7 7.5E-06 2.6E-10 80.9 0.6 34 57-91 22-55 (483)
305 3hvz_A Uncharacterized protein 97.7 3.3E-05 1.1E-09 56.5 3.8 52 309-368 17-68 (78)
306 2eyu_A Twitching motility prot 97.6 1.2E-05 4E-10 73.4 1.6 38 66-114 26-64 (261)
307 2og2_A Putative signal recogni 97.6 4.5E-05 1.5E-09 72.7 5.5 39 63-112 155-193 (359)
308 1znw_A Guanylate kinase, GMP k 97.6 2.3E-05 7.8E-10 68.7 3.1 26 65-90 20-45 (207)
309 1zp6_A Hypothetical protein AT 97.6 3.9E-05 1.3E-09 65.9 4.4 23 66-88 10-32 (191)
310 1ye8_A Protein THEP1, hypothet 97.6 2.6E-05 8.9E-10 66.9 3.0 24 67-90 2-25 (178)
311 3kl4_A SRP54, signal recogniti 97.6 1.6E-05 5.5E-10 77.6 1.8 24 65-88 97-120 (433)
312 2pt7_A CAG-ALFA; ATPase, prote 97.6 3.4E-05 1.2E-09 72.8 3.8 36 66-112 172-207 (330)
313 2f1r_A Molybdopterin-guanine d 97.6 1.5E-05 5E-10 68.0 0.7 45 66-118 3-47 (171)
314 3c8u_A Fructokinase; YP_612366 97.5 2.9E-05 9.9E-10 68.1 2.4 26 66-91 23-48 (208)
315 3tau_A Guanylate kinase, GMP k 97.5 2.3E-05 8E-10 68.7 1.7 55 65-121 8-64 (208)
316 2yv5_A YJEQ protein; hydrolase 97.5 8.5E-05 2.9E-09 69.2 5.5 46 242-287 111-164 (302)
317 3tr0_A Guanylate kinase, GMP k 97.5 5E-05 1.7E-09 65.9 3.4 24 66-89 8-31 (205)
318 2obl_A ESCN; ATPase, hydrolase 97.5 6.8E-05 2.3E-09 71.2 4.4 42 58-112 66-107 (347)
319 1j8m_F SRP54, signal recogniti 97.5 4E-05 1.4E-09 71.2 2.7 25 65-89 98-122 (297)
320 2gza_A Type IV secretion syste 97.5 5.7E-05 2E-09 72.2 3.8 37 64-111 174-210 (361)
321 1rj9_A FTSY, signal recognitio 97.5 4E-05 1.4E-09 71.4 2.4 37 65-112 102-138 (304)
322 2jeo_A Uridine-cytidine kinase 97.4 6.3E-05 2.1E-09 67.7 3.2 33 55-89 17-49 (245)
323 2dpy_A FLII, flagellum-specifi 97.4 8.9E-05 3E-09 72.6 3.6 39 63-112 155-193 (438)
324 2v9p_A Replication protein E1; 97.3 4.6E-05 1.6E-09 70.9 1.3 27 63-89 124-150 (305)
325 3e70_C DPA, signal recognition 97.3 5.8E-05 2E-09 71.1 2.0 38 64-112 128-165 (328)
326 2i3b_A HCR-ntpase, human cance 97.3 8.8E-05 3E-09 64.2 2.7 25 66-90 2-26 (189)
327 3asz_A Uridine kinase; cytidin 97.3 0.00011 3.8E-09 64.2 3.0 26 65-90 6-31 (211)
328 1sq5_A Pantothenate kinase; P- 97.3 0.0001 3.5E-09 68.7 3.0 26 65-90 80-105 (308)
329 2oap_1 GSPE-2, type II secreti 97.2 0.00018 6.1E-09 71.8 3.9 27 65-91 260-286 (511)
330 1qhl_A Protein (cell division 97.2 1.4E-05 4.9E-10 71.2 -3.8 37 66-113 28-64 (227)
331 1ex7_A Guanylate kinase; subst 97.2 8.2E-05 2.8E-09 64.2 1.1 53 67-121 3-57 (186)
332 2ehv_A Hypothetical protein PH 97.1 0.00018 6.3E-09 64.2 3.0 22 66-87 31-52 (251)
333 3cnl_A YLQF, putative uncharac 97.1 9.5E-05 3.3E-09 67.4 1.0 47 242-289 47-98 (262)
334 2bbw_A Adenylate kinase 4, AK4 97.1 0.00025 8.4E-09 63.7 3.7 27 65-91 27-56 (246)
335 1nij_A Hypothetical protein YJ 97.1 0.00013 4.5E-09 68.4 1.8 47 66-115 5-51 (318)
336 1u0l_A Probable GTPase ENGC; p 97.1 0.00045 1.5E-08 64.2 5.4 46 242-287 116-168 (301)
337 2bdt_A BH3686; alpha-beta prot 97.1 0.00019 6.6E-09 61.5 2.6 22 66-87 3-24 (189)
338 1p9r_A General secretion pathw 97.1 0.00013 4.4E-09 71.0 1.5 26 66-91 168-193 (418)
339 4a74_A DNA repair and recombin 97.1 0.00022 7.6E-09 62.8 3.0 25 66-90 26-50 (231)
340 4eun_A Thermoresistant glucoki 97.1 0.00024 8.3E-09 61.6 3.1 25 65-89 29-53 (200)
341 2j41_A Guanylate kinase; GMP, 97.1 0.0003 1E-08 61.0 3.4 24 66-89 7-30 (207)
342 2qor_A Guanylate kinase; phosp 97.0 0.00015 5E-09 63.3 1.3 52 66-119 13-66 (204)
343 1kag_A SKI, shikimate kinase I 97.0 0.00027 9.2E-09 59.5 2.7 24 66-89 5-28 (173)
344 3kta_A Chromosome segregation 97.0 0.00047 1.6E-08 58.6 4.3 32 57-89 19-50 (182)
345 1lw7_A Transcriptional regulat 97.0 0.00026 9E-09 67.6 2.8 27 65-91 170-196 (365)
346 1azs_C GS-alpha; complex (lyas 97.0 0.00081 2.8E-08 64.9 6.0 42 106-154 211-252 (402)
347 2ewv_A Twitching motility prot 96.9 0.00021 7.3E-09 68.5 1.5 27 65-91 136-162 (372)
348 3ec1_A YQEH GTPase; atnos1, at 96.9 0.00029 9.9E-09 67.5 2.1 50 242-291 99-161 (369)
349 1knq_A Gluconate kinase; ALFA/ 96.9 0.00049 1.7E-08 58.1 3.0 23 66-88 9-31 (175)
350 3uie_A Adenylyl-sulfate kinase 96.8 0.00051 1.8E-08 59.5 3.1 25 65-89 25-49 (200)
351 3vaa_A Shikimate kinase, SK; s 96.8 0.00059 2E-08 59.1 3.3 33 55-89 17-49 (199)
352 3ohm_A Guanine nucleotide-bind 96.8 0.0022 7.6E-08 60.1 7.3 43 104-153 159-201 (327)
353 1tf7_A KAIC; homohexamer, hexa 96.8 0.00039 1.3E-08 69.7 2.2 46 55-113 30-78 (525)
354 3ec2_A DNA replication protein 96.8 0.00057 2E-08 58.0 2.6 25 66-90 39-63 (180)
355 4e22_A Cytidylate kinase; P-lo 96.7 0.00056 1.9E-08 61.8 2.6 27 65-91 27-56 (252)
356 2kjq_A DNAA-related protein; s 96.7 0.00064 2.2E-08 56.2 2.5 26 66-91 37-62 (149)
357 1cke_A CK, MSSA, protein (cyti 96.7 0.00077 2.6E-08 59.3 3.1 24 66-89 6-29 (227)
358 1jjv_A Dephospho-COA kinase; P 96.7 0.00088 3E-08 58.1 3.3 22 66-87 3-24 (206)
359 2vp4_A Deoxynucleoside kinase; 96.7 0.00078 2.7E-08 59.8 2.9 24 65-88 20-43 (230)
360 2xtz_A Guanine nucleotide-bind 96.7 0.0015 5.1E-08 62.0 5.0 36 111-153 182-217 (354)
361 2if2_A Dephospho-COA kinase; a 96.6 0.00088 3E-08 58.0 3.1 22 66-87 2-23 (204)
362 3jvv_A Twitching mobility prot 96.6 0.00085 2.9E-08 63.8 3.0 26 66-91 124-149 (356)
363 1rz3_A Hypothetical protein rb 96.5 0.0011 3.9E-08 57.4 3.0 26 66-91 23-48 (201)
364 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.00089 3.1E-08 58.8 2.1 26 66-91 24-49 (235)
365 1cr0_A DNA primase/helicase; R 96.5 0.00093 3.2E-08 61.6 2.2 27 65-91 35-61 (296)
366 2qt1_A Nicotinamide riboside k 96.5 0.0015 5E-08 56.8 3.3 25 65-89 21-45 (207)
367 3tqc_A Pantothenate kinase; bi 96.4 0.0015 5E-08 61.2 3.3 26 65-90 92-117 (321)
368 2x8a_A Nuclear valosin-contain 96.4 0.0012 4.2E-08 60.3 2.7 22 68-89 47-68 (274)
369 3qf7_A RAD50; ABC-ATPase, ATPa 96.4 0.0016 5.6E-08 62.1 3.6 28 59-87 18-45 (365)
370 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.003 1E-07 52.1 4.3 21 66-86 24-44 (149)
371 3t61_A Gluconokinase; PSI-biol 96.3 0.0017 5.9E-08 56.1 2.6 23 66-88 19-41 (202)
372 1vma_A Cell division protein F 96.3 0.0032 1.1E-07 58.5 4.5 28 64-91 103-130 (306)
373 1np6_A Molybdopterin-guanine d 96.2 0.0025 8.6E-08 54.1 3.1 24 66-89 7-30 (174)
374 3kb2_A SPBC2 prophage-derived 96.2 0.0024 8.3E-08 53.2 3.1 23 66-88 2-24 (173)
375 1wb9_A DNA mismatch repair pro 96.2 0.0026 8.8E-08 66.8 3.6 32 57-89 600-631 (800)
376 3lw7_A Adenylate kinase relate 96.1 0.0027 9.1E-08 52.9 3.1 20 66-85 2-21 (179)
377 2o5v_A DNA replication and rep 96.1 0.003 1E-07 60.0 3.7 30 57-87 19-48 (359)
378 2pez_A Bifunctional 3'-phospho 96.1 0.0029 9.8E-08 53.5 3.1 24 66-89 6-29 (179)
379 1ixz_A ATP-dependent metallopr 96.1 0.0023 8E-08 57.4 2.7 22 68-89 52-73 (254)
380 1zu4_A FTSY; GTPase, signal re 96.1 0.0054 1.9E-07 57.3 5.3 30 62-91 102-131 (320)
381 1svm_A Large T antigen; AAA+ f 96.1 0.0016 5.5E-08 62.3 1.7 25 64-88 168-192 (377)
382 1t9h_A YLOQ, probable GTPase E 96.1 0.00096 3.3E-08 62.1 0.1 43 242-284 118-169 (307)
383 3cm0_A Adenylate kinase; ATP-b 96.0 0.0029 1E-07 53.6 2.8 23 66-88 5-27 (186)
384 1ly1_A Polynucleotide kinase; 96.0 0.0036 1.2E-07 52.6 3.3 22 66-87 3-24 (181)
385 1in4_A RUVB, holliday junction 96.0 0.0027 9.2E-08 59.7 2.7 24 66-89 52-75 (334)
386 3nwj_A ATSK2; P loop, shikimat 96.0 0.0029 9.9E-08 57.0 2.6 24 65-88 48-71 (250)
387 1n0w_A DNA repair protein RAD5 96.0 0.0034 1.2E-07 55.5 3.1 23 66-88 25-47 (243)
388 4ido_A Atlastin-1; GTPase, GTP 96.0 0.005 1.7E-07 60.0 4.4 60 66-125 68-153 (457)
389 1y63_A LMAJ004144AAA protein; 96.0 0.0038 1.3E-07 53.2 3.2 24 65-88 10-33 (184)
390 1odf_A YGR205W, hypothetical 3 95.9 0.0037 1.3E-07 57.6 3.3 26 66-91 32-57 (290)
391 1iy2_A ATP-dependent metallopr 95.9 0.0032 1.1E-07 57.4 2.7 22 68-89 76-97 (278)
392 1kht_A Adenylate kinase; phosp 95.9 0.0045 1.5E-07 52.5 3.3 23 66-88 4-26 (192)
393 2cvh_A DNA repair and recombin 95.9 0.004 1.4E-07 54.1 3.1 22 66-87 21-42 (220)
394 1qhx_A CPT, protein (chloramph 95.9 0.0046 1.6E-07 52.0 3.3 24 66-89 4-27 (178)
395 2jaq_A Deoxyguanosine kinase; 95.9 0.0043 1.5E-07 53.2 3.2 22 67-88 2-23 (205)
396 2yvu_A Probable adenylyl-sulfa 95.9 0.0043 1.5E-07 52.8 3.1 26 65-90 13-38 (186)
397 1ewq_A DNA mismatch repair pro 95.9 0.0038 1.3E-07 65.1 3.3 25 65-89 576-600 (765)
398 3thx_B DNA mismatch repair pro 95.8 0.0032 1.1E-07 67.0 2.4 32 57-88 665-696 (918)
399 1w1w_A Structural maintenance 95.7 0.0058 2E-07 59.5 3.9 29 62-90 23-51 (430)
400 3thx_A DNA mismatch repair pro 95.7 0.0057 2E-07 65.2 4.1 29 57-85 654-682 (934)
401 3trf_A Shikimate kinase, SK; a 95.7 0.0055 1.9E-07 51.9 3.3 23 66-88 6-28 (185)
402 4eaq_A DTMP kinase, thymidylat 95.7 0.0043 1.5E-07 55.1 2.7 26 65-90 26-51 (229)
403 2rhm_A Putative kinase; P-loop 95.7 0.0053 1.8E-07 52.2 3.2 23 66-88 6-28 (193)
404 1nks_A Adenylate kinase; therm 95.7 0.0055 1.9E-07 52.0 3.2 24 66-89 2-25 (194)
405 2px0_A Flagellar biosynthesis 95.7 0.0047 1.6E-07 57.1 3.0 27 65-91 105-131 (296)
406 3qks_A DNA double-strand break 95.7 0.0089 3E-07 51.9 4.6 21 66-86 24-44 (203)
407 3cr8_A Sulfate adenylyltranfer 95.7 0.0034 1.2E-07 63.1 2.1 27 65-91 369-395 (552)
408 1nlf_A Regulatory protein REPA 95.7 0.0051 1.7E-07 56.1 3.0 24 66-89 31-54 (279)
409 1via_A Shikimate kinase; struc 95.7 0.005 1.7E-07 51.8 2.7 23 66-88 5-27 (175)
410 1pzn_A RAD51, DNA repair and r 95.6 0.007 2.4E-07 57.3 3.8 24 66-89 132-155 (349)
411 1tev_A UMP-CMP kinase; ploop, 95.6 0.0067 2.3E-07 51.5 3.3 23 66-88 4-26 (196)
412 2plr_A DTMP kinase, probable t 95.6 0.0066 2.3E-07 52.4 3.3 24 66-89 5-28 (213)
413 2v54_A DTMP kinase, thymidylat 95.6 0.0068 2.3E-07 52.1 3.3 24 66-89 5-28 (204)
414 2rcn_A Probable GTPase ENGC; Y 95.6 0.01 3.5E-07 56.2 4.8 45 242-286 161-213 (358)
415 3fb4_A Adenylate kinase; psych 95.6 0.0064 2.2E-07 52.9 3.1 22 67-88 2-23 (216)
416 2c95_A Adenylate kinase 1; tra 95.5 0.007 2.4E-07 51.6 3.2 23 66-88 10-32 (196)
417 3qkt_A DNA double-strand break 95.5 0.0082 2.8E-07 56.5 4.0 21 66-86 24-44 (339)
418 3dl0_A Adenylate kinase; phosp 95.5 0.0069 2.4E-07 52.8 3.1 22 67-88 2-23 (216)
419 1uf9_A TT1252 protein; P-loop, 95.5 0.0081 2.8E-07 51.5 3.5 24 65-88 8-31 (203)
420 1vht_A Dephospho-COA kinase; s 95.5 0.0072 2.4E-07 52.8 3.1 22 66-87 5-26 (218)
421 2bwj_A Adenylate kinase 5; pho 95.4 0.0078 2.7E-07 51.4 3.2 23 66-88 13-35 (199)
422 1xjc_A MOBB protein homolog; s 95.4 0.0081 2.8E-07 50.7 3.2 24 66-89 5-28 (169)
423 1aky_A Adenylate kinase; ATP:A 95.4 0.0088 3E-07 52.3 3.5 24 65-88 4-27 (220)
424 2wwf_A Thymidilate kinase, put 95.4 0.008 2.7E-07 52.0 3.2 23 66-88 11-33 (212)
425 3iij_A Coilin-interacting nucl 95.4 0.0073 2.5E-07 50.9 2.8 23 66-88 12-34 (180)
426 1zd8_A GTP:AMP phosphotransfer 95.4 0.0085 2.9E-07 52.7 3.3 23 66-88 8-30 (227)
427 1m7g_A Adenylylsulfate kinase; 95.4 0.008 2.7E-07 52.3 3.1 25 66-90 26-50 (211)
428 1q3t_A Cytidylate kinase; nucl 95.4 0.008 2.7E-07 53.3 3.1 24 65-88 16-39 (236)
429 1nn5_A Similar to deoxythymidy 95.3 0.0089 3E-07 51.7 3.2 23 66-88 10-32 (215)
430 2cdn_A Adenylate kinase; phosp 95.3 0.0094 3.2E-07 51.3 3.3 24 65-88 20-43 (201)
431 2ze6_A Isopentenyl transferase 95.3 0.0085 2.9E-07 53.9 3.1 23 66-88 2-24 (253)
432 2iyv_A Shikimate kinase, SK; t 95.3 0.0077 2.6E-07 51.0 2.7 23 66-88 3-25 (184)
433 1sxj_E Activator 1 40 kDa subu 95.3 0.0056 1.9E-07 57.6 1.9 22 67-88 38-59 (354)
434 1qf9_A UMP/CMP kinase, protein 95.3 0.0096 3.3E-07 50.4 3.2 23 66-88 7-29 (194)
435 1gtv_A TMK, thymidylate kinase 95.3 0.004 1.4E-07 54.0 0.7 23 67-89 2-24 (214)
436 2p5t_B PEZT; postsegregational 95.2 0.0063 2.2E-07 54.7 2.0 24 66-89 33-56 (253)
437 2pt5_A Shikimate kinase, SK; a 95.2 0.01 3.4E-07 49.3 3.2 22 67-88 2-23 (168)
438 1ls1_A Signal recognition part 95.2 0.0048 1.7E-07 57.0 1.2 27 65-91 98-124 (295)
439 3l82_B F-box only protein 4; T 95.2 0.0047 1.6E-07 53.9 1.0 50 242-291 163-222 (227)
440 1zak_A Adenylate kinase; ATP:A 95.2 0.0094 3.2E-07 52.2 2.9 23 66-88 6-28 (222)
441 2vli_A Antibiotic resistance p 95.2 0.0084 2.9E-07 50.5 2.5 23 66-88 6-28 (183)
442 3r20_A Cytidylate kinase; stru 95.2 0.011 3.8E-07 52.6 3.3 23 66-88 10-32 (233)
443 2pbr_A DTMP kinase, thymidylat 95.2 0.01 3.6E-07 50.3 3.1 22 67-88 2-23 (195)
444 1e6c_A Shikimate kinase; phosp 95.2 0.01 3.4E-07 49.5 2.9 23 66-88 3-25 (173)
445 2z0h_A DTMP kinase, thymidylat 95.1 0.011 3.6E-07 50.5 3.1 23 67-89 2-24 (197)
446 4fcw_A Chaperone protein CLPB; 95.1 0.044 1.5E-06 50.3 7.5 24 66-89 48-71 (311)
447 3m6a_A ATP-dependent protease 95.1 0.0098 3.4E-07 59.8 3.2 25 66-90 109-133 (543)
448 1e4v_A Adenylate kinase; trans 95.1 0.011 3.8E-07 51.4 3.0 22 67-88 2-23 (214)
449 1ukz_A Uridylate kinase; trans 95.1 0.012 4.2E-07 50.5 3.2 25 64-88 14-38 (203)
450 1gvn_B Zeta; postsegregational 95.0 0.012 4E-07 54.1 3.1 23 66-88 34-56 (287)
451 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.013 4.3E-07 53.0 3.3 23 66-88 5-27 (260)
452 3tlx_A Adenylate kinase 2; str 95.0 0.013 4.4E-07 52.3 3.3 23 66-88 30-52 (243)
453 1lv7_A FTSH; alpha/beta domain 95.0 0.011 3.7E-07 53.0 2.7 24 66-89 46-69 (257)
454 1zuh_A Shikimate kinase; alpha 95.0 0.014 4.7E-07 48.6 3.2 24 65-88 7-30 (168)
455 2o8b_B DNA mismatch repair pro 94.9 0.012 4.2E-07 63.4 3.5 25 65-90 789-813 (1022)
456 3h2y_A GTPase family protein; 94.9 0.019 6.4E-07 54.7 4.4 50 242-291 97-159 (368)
457 3be4_A Adenylate kinase; malar 94.9 0.014 4.9E-07 50.9 3.3 23 66-88 6-28 (217)
458 2xb4_A Adenylate kinase; ATP-b 94.8 0.015 5E-07 51.2 3.1 22 67-88 2-23 (223)
459 3sr0_A Adenylate kinase; phosp 94.8 0.015 5.2E-07 50.7 3.1 22 67-88 2-23 (206)
460 3ake_A Cytidylate kinase; CMP 94.7 0.015 5.3E-07 49.9 2.9 22 67-88 4-25 (208)
461 2grj_A Dephospho-COA kinase; T 94.7 0.017 5.7E-07 49.8 3.1 23 66-88 13-35 (192)
462 3umf_A Adenylate kinase; rossm 94.6 0.019 6.6E-07 50.4 3.3 23 66-88 30-52 (217)
463 1ak2_A Adenylate kinase isoenz 94.5 0.02 6.9E-07 50.6 3.3 23 66-88 17-39 (233)
464 1uj2_A Uridine-cytidine kinase 94.5 0.021 7.1E-07 51.2 3.4 24 65-88 22-45 (252)
465 1tf7_A KAIC; homohexamer, hexa 94.4 0.018 6.1E-07 57.6 3.1 27 65-91 281-307 (525)
466 2f6r_A COA synthase, bifunctio 94.4 0.022 7.6E-07 52.0 3.4 23 64-86 74-96 (281)
467 3l2o_B F-box only protein 4; s 94.4 0.024 8.3E-07 51.9 3.4 50 242-291 248-307 (312)
468 1jbk_A CLPB protein; beta barr 94.3 0.025 8.4E-07 47.3 3.3 24 66-89 44-67 (195)
469 2w58_A DNAI, primosome compone 94.2 0.025 8.5E-07 48.5 3.1 24 66-89 55-78 (202)
470 3auy_A DNA double-strand break 94.2 0.03 1E-06 53.3 3.9 21 66-86 26-46 (371)
471 2dr3_A UPF0273 protein PH0284; 94.2 0.026 8.8E-07 49.8 3.2 23 66-88 24-46 (247)
472 3bos_A Putative DNA replicatio 94.1 0.025 8.7E-07 49.4 3.1 24 66-89 53-76 (242)
473 1ltq_A Polynucleotide kinase; 94.0 0.029 9.9E-07 51.4 3.3 22 66-87 3-24 (301)
474 2ga8_A Hypothetical 39.9 kDa p 93.9 0.029 9.9E-07 53.0 3.0 24 66-89 25-48 (359)
475 3gmt_A Adenylate kinase; ssgci 93.8 0.033 1.1E-06 49.3 3.2 23 66-88 9-31 (230)
476 4edh_A DTMP kinase, thymidylat 93.8 0.03 1E-06 49.0 2.8 24 66-89 7-30 (213)
477 3cf0_A Transitional endoplasmi 93.8 0.031 1.1E-06 51.4 3.0 24 66-89 50-73 (301)
478 3b9p_A CG5977-PA, isoform A; A 93.7 0.032 1.1E-06 51.0 3.0 24 66-89 55-78 (297)
479 2dhr_A FTSH; AAA+ protein, hex 93.7 0.027 9.3E-07 55.8 2.6 23 67-89 66-88 (499)
480 3lda_A DNA repair protein RAD5 93.6 0.036 1.2E-06 53.3 3.2 21 66-86 179-199 (400)
481 2qmh_A HPR kinase/phosphorylas 93.6 0.061 2.1E-06 46.5 4.2 29 59-88 29-57 (205)
482 2p65_A Hypothetical protein PF 93.4 0.033 1.1E-06 46.5 2.3 24 66-89 44-67 (187)
483 3lv8_A DTMP kinase, thymidylat 93.4 0.037 1.2E-06 49.3 2.6 25 65-89 27-51 (236)
484 1sxj_C Activator 1 40 kDa subu 93.3 0.036 1.2E-06 51.9 2.6 23 67-89 48-70 (340)
485 3n70_A Transport activator; si 93.3 0.065 2.2E-06 43.5 3.9 24 66-89 25-48 (145)
486 1fnn_A CDC6P, cell division co 93.2 0.044 1.5E-06 51.8 3.2 24 67-90 46-69 (389)
487 1ypw_A Transitional endoplasmi 93.2 0.049 1.7E-06 57.3 3.7 24 66-89 239-262 (806)
488 4ad8_A DNA repair protein RECN 93.1 0.023 8E-07 56.6 1.0 30 57-87 53-82 (517)
489 3h4m_A Proteasome-activating n 93.1 0.048 1.6E-06 49.4 3.0 24 66-89 52-75 (285)
490 2qby_A CDC6 homolog 1, cell di 93.0 0.044 1.5E-06 51.5 2.9 24 66-89 46-69 (386)
491 2h92_A Cytidylate kinase; ross 93.0 0.048 1.7E-06 47.3 2.9 23 66-88 4-26 (219)
492 1a7j_A Phosphoribulokinase; tr 93.0 0.034 1.2E-06 51.1 1.9 23 66-88 6-28 (290)
493 1tue_A Replication protein E1; 93.0 0.034 1.2E-06 48.3 1.8 22 67-88 60-81 (212)
494 3v9p_A DTMP kinase, thymidylat 93.0 0.032 1.1E-06 49.4 1.6 24 66-89 26-49 (227)
495 1p5z_B DCK, deoxycytidine kina 93.0 0.043 1.5E-06 49.4 2.5 25 65-89 24-48 (263)
496 1njg_A DNA polymerase III subu 93.0 0.046 1.6E-06 47.4 2.7 24 66-89 46-69 (250)
497 1l8q_A Chromosomal replication 93.0 0.043 1.5E-06 50.9 2.6 24 66-89 38-61 (324)
498 2ffh_A Protein (FFH); SRP54, s 92.9 0.28 9.4E-06 47.5 8.3 27 65-91 98-124 (425)
499 2qz4_A Paraplegin; AAA+, SPG7, 92.9 0.056 1.9E-06 48.1 3.2 23 66-88 40-62 (262)
500 3zvl_A Bifunctional polynucleo 92.9 0.054 1.9E-06 52.4 3.2 25 64-88 257-281 (416)
No 1
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-65 Score=493.59 Aligned_cols=368 Identities=63% Similarity=1.033 Sum_probs=338.4
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHHHHHhcCCCCCCCCCCCCCceeEEecCCcEEEEEcCCCCchHH
Q 016864 1 MATVMQKIKDIEDEMARTQKNKATAHHLGLLKAKLAKLRRELLTPTSKGGGGGGGEGFDVTKSGDSRVGLVGFPSVGKST 80 (381)
Q Consensus 1 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~naGKST 80 (381)
|.|++|||++||++|++.|+||+|++++.+++++|++++++++....++.+++.+.+|.+.++|..+|||||+|||||||
T Consensus 8 ~~t~~eki~~ie~~~~~~~k~k~Te~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKST 87 (376)
T 4a9a_A 8 MSTTVEKIKAIEDEMARTQKNKATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKST 87 (376)
T ss_dssp -CHHHHHHHHHHHHHHHSCCSTTTHHHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHH
Confidence 78999999999999999999999999999999999999999887664444555677899999999999999999999999
Q ss_pred HHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCChHHHH
Q 016864 81 LLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKR 160 (381)
Q Consensus 81 Lln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~~~~ 160 (381)
|||+|||....+++|||||++|..|.+.+.|.+++++||||++++++.+.+.++++++.++.+|++++|+|+++|..+.+
T Consensus 88 L~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~ 167 (376)
T 4a9a_A 88 LLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQ 167 (376)
T ss_dssp HHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHH
T ss_pred HHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhc-cc
Q 016864 161 LIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEG-SR 239 (381)
Q Consensus 161 ~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~-~~ 239 (381)
.+..+|+.+++.+.+++..+..++.+++++.+....+...++.++++.++..+.+..+++.+..+++.+++.+.+.. .+
T Consensus 168 ~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~ 247 (376)
T 4a9a_A 168 IIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSR 247 (376)
T ss_dssp HHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTC
T ss_pred HHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999998865 55
Q ss_pred ccccEEEEEecCCcCCHHHHHHHhcCCCeeeecccccccHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCCCCH
Q 016864 240 IYMPCIYVINKIDQITLEELEILDKLPHYCPVSAHLEWNLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKRTV 319 (381)
Q Consensus 240 ~~~p~i~v~NK~Dl~~~~~l~~l~~~~~~v~vSa~~~~gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (381)
.++|+++++||+|....++++.+...+..+++|+..+.|+++|.+.+|+.|+++++||+++++.++|+.|..+..+++++
T Consensus 248 ~~~p~i~v~nKid~~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at~ 327 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSV 327 (376)
T ss_dssp EEECEEEEEECGGGSCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCBH
T ss_pred hccceEEEEecccccCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCcH
Confidence 57899999999999999999888888899999999999999999999999999999999999999999999998887899
Q ss_pred HHHHHHHHHHHHhcccEEEEecCCCccCCeeeCCCcccccCCCCCCCCC
Q 016864 320 EDFCERIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELEDEXXXXXXXX 368 (381)
Q Consensus 320 ~~~~~~i~~~~~~~f~~a~~~~~~~~~~~~rvg~~~~l~~~d~~~i~~~ 368 (381)
.|++..+|+++...|++|++||.++++.+|++|++|+|+|||||+|+++
T Consensus 328 ~D~a~~ih~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~k 376 (376)
T 4a9a_A 328 KDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILKK 376 (376)
T ss_dssp HHHHHHHCGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999864
No 2
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=9.2e-37 Score=297.53 Aligned_cols=290 Identities=24% Similarity=0.380 Sum_probs=192.2
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEE---------------------c---CEEeeecCcccc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITY---------------------R---GAKIQLLDLPGI 122 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~---------------------~---g~~i~l~DtpG~ 122 (381)
+|+|||.||||||||+|+|+|....++++||||+++..|.+.+ + +.++.++||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 7999999999999999999998877899999999999997543 2 268999999999
Q ss_pred cccccCCCcchhhhhcccCCcchhHHHHhcCC-------------ChHHHHHHHHHHHhccc-ccccCcCcccceeeccc
Q 016864 123 IEGAKDGKGRGRQVISTARTCNCILIVLDAIK-------------PITHKRLIEKELEGFGI-RLNKQPPNLTFRKKDKG 188 (381)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~-------------~~~~~~~i~~~l~~~~~-~~~~~~~~ls~~~~~r~ 188 (381)
.++++.+.+.+++++..++.+|++++|+|+++ |..+.+.+..+|..+.+ .+.+++..+. .+..++
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~-k~~~~~ 160 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFA-KRIKLQ 160 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHH-STTTSS
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHhhc
Confidence 88776666677888888999999999999875 56788889999888755 3445454444 111222
Q ss_pred cceeeec----ccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhccc-ccccEEEEEecCCcCCHHHHHHHh
Q 016864 189 GINFTST----VTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSR-IYMPCIYVINKIDQITLEELEILD 263 (381)
Q Consensus 189 ~~~i~~~----~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~-~~~p~i~v~NK~Dl~~~~~l~~l~ 263 (381)
+..+... ....+.+.+.+..++..++...+ ..+|+.+++..+..... ..+|+|+|+||+|+...++++.+.
T Consensus 161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~~~~l~~l~ 236 (397)
T 1wxq_A 161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLV 236 (397)
T ss_dssp CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSCHHHHHHHH
T ss_pred CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEEeCccccchHHHHHHH
Confidence 2221110 11134677889999999887765 24677776555543321 138999999999998655554442
Q ss_pred c-----CCCeeeecccccccHHHH------------------------------------------------H-HHHHHH
Q 016864 264 K-----LPHYCPVSAHLEWNLDGL------------------------------------------------L-EKIWEY 289 (381)
Q Consensus 264 ~-----~~~~v~vSa~~~~gl~~L------------------------------------------------~-~~i~~~ 289 (381)
+ ..+++++||+.+.++++| + ..+|+.
T Consensus 237 ~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g~~g~~~~i~~~~~~~ 316 (397)
T 1wxq_A 237 REEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFGSTGVQEVINRVVFDL 316 (397)
T ss_dssp HHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSSSCSHHHHHHHHHHTT
T ss_pred HHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 2 236899999998887542 2 355889
Q ss_pred cCCcEEEeCC--------CCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHhcccEEEEecCCCccCCeeeCCCcccccCC
Q 016864 290 LNLTRIYTKP--------KGMNPDYEDPVILSSKKRTVEDFCERIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELEDEX 361 (381)
Q Consensus 290 l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~f~~a~~~~~~~~~~~~rvg~~~~l~~~d 361 (381)
++++++||.. +|. ....++++++ |+|+.|+|+.||+|+.++|++|.. +..++|+|++|+|+|||
T Consensus 317 L~li~vft~~~~~~~~~~~g~--~~~~~~~l~~-G~t~~d~a~~iH~d~~~~f~~a~~-----~~~~~~~g~~~~l~dgD 388 (397)
T 1wxq_A 317 LKLIPVYPVHDENKLTDQFGN--VLPHVFLMKK-GSTPRDLAFKVHTDLGKGFLYAIN-----ARTKRRVGEDYELQFND 388 (397)
T ss_dssp SCEEEEEEESCC-----CCSC--SSCCCEEEET-TCCHHHHHHHHCHHHHHTEEEEEE-----TTTCSBCCTTCCCCTTE
T ss_pred hCCeEEEeecccccccCCcCc--ccceeEEeCC-CCCHHHHHHHHhHHHHhhhhhhHH-----hcCCEEcCCCccccCCC
Confidence 9999999943 321 2335677755 599999999999999999999982 34789999999999999
Q ss_pred CCCCCCCC
Q 016864 362 XXXXXXXL 369 (381)
Q Consensus 362 ~~~i~~~~ 369 (381)
+|+|+++.
T Consensus 389 vv~i~~~~ 396 (397)
T 1wxq_A 389 IVKIVSVT 396 (397)
T ss_dssp EEEEEEC-
T ss_pred EEEEEeCC
Confidence 99999864
No 3
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=6.5e-36 Score=286.26 Aligned_cols=285 Identities=24% Similarity=0.342 Sum_probs=199.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC-----------------EEeeecCcccccccccC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG-----------------AKIQLLDLPGIIEGAKD 128 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g-----------------~~i~l~DtpG~~~~~~~ 128 (381)
.+|+|||.||||||||+|+|++....++++||||++|..|.+.+++ ..+.++||||+.++++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 6899999999999999999999887789999999999999998876 57999999999988776
Q ss_pred CCcchhhhhcccCCcchhHHHHhcCC------------ChHHHHHHHHHHHhccc-ccccCcCcccceeeccccceeeec
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAIK------------PITHKRLIEKELEGFGI-RLNKQPPNLTFRKKDKGGINFTST 195 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~~------------~~~~~~~i~~~l~~~~~-~~~~~~~~ls~~~~~r~~~~i~~~ 195 (381)
+.+.+++++..++.+|++++|+|+++ |..+.+.+..+|..+.+ .+.+++..+.. +.+.+.. ...
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k--~~k~g~~-~~~ 159 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQK--RAKGGDK-EAK 159 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTTCH-HHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHH--Hhhccch-hHH
Confidence 66677888888899999999999874 56778888888876665 22222222211 1111100 000
Q ss_pred ccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcc--cccccEEEEEecCCcC--CHHHHHHHhc-----CC
Q 016864 196 VTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGS--RIYMPCIYVINKIDQI--TLEELEILDK-----LP 266 (381)
Q Consensus 196 ~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~--~~~~p~i~v~NK~Dl~--~~~~l~~l~~-----~~ 266 (381)
...+.+.++...+.- ...+.. .+|+.++ ...+... ...+|+++++|+.|.. ...+++.+.. ..
T Consensus 160 -----~~~~~l~~~~~~L~~-~~~~~~-~~~~~~e-~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~ 231 (363)
T 1jal_A 160 -----FELSVMEKILPVLEN-AGMIRS-VGLDKEE-LQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGA 231 (363)
T ss_dssp -----HHHHHHHHHHHHHHT-TCCGGG-SCCCHHH-HHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHHHHHhc-CCCccc-cCCCHHH-HHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCC
Confidence 001222233222211 111221 2566665 4455542 2248999999999865 2333433322 23
Q ss_pred Ceeeecccc----------------------cccHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCCCCHHHHHH
Q 016864 267 HYCPVSAHL----------------------EWNLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKRTVEDFCE 324 (381)
Q Consensus 267 ~~v~vSa~~----------------------~~gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (381)
++|++||.. +.|+++|.+.+++.|+++++||.++.. ..|.++++ |++++++|+
T Consensus 232 ~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e----~raw~i~~-G~ta~~aAg 306 (363)
T 1jal_A 232 VVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKE----VRAWTVSV-GATAPKAAA 306 (363)
T ss_dssp EEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECSSE----EEEEEEET-TCBHHHHHH
T ss_pred CEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCCCC----cceeEecC-CCcHHHHHH
Confidence 578899654 468999999999999999999987643 34566655 599999999
Q ss_pred HHHHHHHhcccEEEEecCC----------CccCC--eeeCCCcccccCCCCCCC
Q 016864 325 RIHKDMVKQFKYALVWGSS----------AKHKP--QRVGKEHELEDEXXXXXX 366 (381)
Q Consensus 325 ~i~~~~~~~f~~a~~~~~~----------~~~~~--~rvg~~~~l~~~d~~~i~ 366 (381)
.||+||+++|++|+||+++ ++..| +++|++|+++||||++|.
T Consensus 307 ~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f~ 360 (363)
T 1jal_A 307 VIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFR 360 (363)
T ss_dssp TTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEEE
T ss_pred hhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEEE
Confidence 9999999999999999943 55555 667999999999999875
No 4
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-36 Score=288.47 Aligned_cols=290 Identities=22% Similarity=0.313 Sum_probs=184.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC-----------------EEeeecCcccccccccC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG-----------------AKIQLLDLPGIIEGAKD 128 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g-----------------~~i~l~DtpG~~~~~~~ 128 (381)
.+|+|||+||||||||||+|+|....++++||||++|..|.+.+.+ ..+.++||||+.++.+.
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~ 102 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHN 102 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccch
Confidence 7999999999999999999999888889999999999999998764 24899999999998877
Q ss_pred CCcchhhhhcccCCcchhHHHHhcC------------CChHHHHHHHHHHHhcccc-cccCcCcccceeeccccceeeec
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAI------------KPITHKRLIEKELEGFGIR-LNKQPPNLTFRKKDKGGINFTST 195 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~------------~~~~~~~~i~~~l~~~~~~-~~~~~~~ls~~~~~r~~~~i~~~ 195 (381)
+.+.+++++..++.+|++++|+|++ +|..+.+.+..+|..+.+. +.+....+.... .+++.
T Consensus 103 ~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~~~k~~-~~~g~----- 176 (396)
T 2ohf_A 103 GQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVA-VRGGD----- 176 (396)
T ss_dssp ----CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC-----------
T ss_pred hhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhhhhhhh-hcccc-----
Confidence 7778888888999999999999986 4667778888888766551 222111111000 00000
Q ss_pred ccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhc--ccccccEEEEEecCC--cC--CHHHHHHHhc-----
Q 016864 196 VTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEG--SRIYMPCIYVINKID--QI--TLEELEILDK----- 264 (381)
Q Consensus 196 ~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~--~~~~~p~i~v~NK~D--l~--~~~~l~~l~~----- 264 (381)
.......+.+..+...|......+....+|+.++ .+.+.. ....+|+++++|+.+ +. ...++..+.+
T Consensus 177 -~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e-~e~i~~~~llt~KPviy~~Nv~e~~~~~~~n~~~~~v~~~~~~~ 254 (396)
T 2ohf_A 177 -KKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKE-IEVLNKHLFLTSKPMVYLVNLSEKDYIRKKNKWLIKIKEWVDKY 254 (396)
T ss_dssp ----CCHHHHHHHHHHHTTC--CCGGGCCCCCHHH-HHHHHHHCCGGGSCEEEEEECCHHHHHHTCCHHHHHHHHHHHHH
T ss_pred -hhhhhHHHHHHHHHHHHHhcCcchhhcccCCHHH-HHHHHHHHHHhCCceEEEEEecHHHhcccccHHHHHHHHHHHhh
Confidence 0001122333444333322212333244788775 333333 223589999999984 32 1222322221
Q ss_pred --CCCeeeeccccc---------------------ccHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCCCCHHH
Q 016864 265 --LPHYCPVSAHLE---------------------WNLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKRTVED 321 (381)
Q Consensus 265 --~~~~v~vSa~~~---------------------~gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (381)
..++|++||..+ .|++.|.+.+++.|+++++||+++.+. .|.+++ .|+++.+
T Consensus 255 ~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L~li~~fT~g~~ev----rawti~-~g~ta~~ 329 (396)
T 2ohf_A 255 DPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAGPDEV----RAWTIR-KGTKAPQ 329 (396)
T ss_dssp STTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEEESSSEE----EEEEEE-TTCBHHH
T ss_pred CCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHhCCEEEECCCCCcc----eeEEec-CCCcHHH
Confidence 245899999875 458999999999999999999976433 456664 4699999
Q ss_pred HHHHHHHHHHhcccEEEEecCC----------CccCC--eeeCCCcccccCCCCCCCCC
Q 016864 322 FCERIHKDMVKQFKYALVWGSS----------AKHKP--QRVGKEHELEDEXXXXXXXX 368 (381)
Q Consensus 322 ~~~~i~~~~~~~f~~a~~~~~~----------~~~~~--~rvg~~~~l~~~d~~~i~~~ 368 (381)
+|+.||+||+++|++|+||+++ ++..| +++|++|+++||||++|--+
T Consensus 330 aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~f~fn 388 (396)
T 2ohf_A 330 AAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFN 388 (396)
T ss_dssp HHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEEEEEC
T ss_pred HHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEEEEec
Confidence 9999999999999999999544 45555 89999999999999987543
No 5
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=9.2e-35 Score=279.97 Aligned_cols=284 Identities=24% Similarity=0.334 Sum_probs=199.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc---------------------CEEeeecCcccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR---------------------GAKIQLLDLPGIIE 124 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~---------------------g~~i~l~DtpG~~~ 124 (381)
.+|+|||+||||||||+|+|++....++++||||++|+.|.+.+. +..+.++||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 479999999999999999999987778999999999999987642 45799999999999
Q ss_pred cccCCCcchhhhhcccCCcchhHHHHhcCC------------ChHHHHHHHHHHHhccc-ccccCcCcccceeeccccce
Q 016864 125 GAKDGKGRGRQVISTARTCNCILIVLDAIK------------PITHKRLIEKELEGFGI-RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~d~il~vvd~~~------------~~~~~~~i~~~l~~~~~-~~~~~~~~ls~~~~~r~~~~ 191 (381)
+++.+.+.+++++..++.+|++++|+|+++ |..+.+.+..+|..+++ .+.+.+..+... .+....
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~--~~~~~~ 159 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKE--ARADRE 159 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCGG
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhh--hccchh
Confidence 888777788888888999999999999874 55666777777766555 222222211110 000000
Q ss_pred eeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhc--ccccccEEEEEecCCcC--C---HHHHHHHhc
Q 016864 192 FTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEG--SRIYMPCIYVINKIDQI--T---LEELEILDK 264 (381)
Q Consensus 192 i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~--~~~~~p~i~v~NK~Dl~--~---~~~l~~l~~ 264 (381)
. ....+.+.+++..+.- ...+. ..+|+.++ ...+.. ....+|+++++||.|.. . ..+++.+..
T Consensus 160 --~-----~~~~~~l~~~~~~L~~-~~~~~-~~~~~~~~-~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~ 229 (368)
T 2dby_A 160 --R-----LPLLEAAEGLYVHLQE-GKPAR-TFPPSEAV-ARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRR 229 (368)
T ss_dssp --G-----HHHHHHHHHHHHHHHT-TCCGG-GSCCCHHH-HHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHH
T ss_pred --H-----HHHHHHHHHHHHHHhc-CCCcc-cCCCCHHH-HHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHH
Confidence 0 0001122222222211 11111 12555443 444543 12237999999999843 2 333333322
Q ss_pred -----CCCeeeecccc----------------------cccHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCCC
Q 016864 265 -----LPHYCPVSAHL----------------------EWNLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKKR 317 (381)
Q Consensus 265 -----~~~~v~vSa~~----------------------~~gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (381)
..+++++||+. +.|+++|++.+++.|+++++||.++. ...|.++++ |+
T Consensus 230 ~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~----e~~aw~i~~-g~ 304 (368)
T 2dby_A 230 KALEEGAEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEK----EVRAWTVRR-GT 304 (368)
T ss_dssp HHHHHTCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEESSS----CEEEEEEET-TC
T ss_pred HHHHcCCeEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCCCC----CcceEEecC-CC
Confidence 35689999877 46889999999999999999998753 344677755 59
Q ss_pred CHHHHHHHHHHHHHhcccEEEEecCC----------CccCC--eeeCCCcccccCCCCCCC
Q 016864 318 TVEDFCERIHKDMVKQFKYALVWGSS----------AKHKP--QRVGKEHELEDEXXXXXX 366 (381)
Q Consensus 318 ~~~~~~~~i~~~~~~~f~~a~~~~~~----------~~~~~--~rvg~~~~l~~~d~~~i~ 366 (381)
|++++|+.||+||.++|++|+||+++ ++..| +++|++|+++||||++|.
T Consensus 305 ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~~~ 365 (368)
T 2dby_A 305 KAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVL 365 (368)
T ss_dssp BHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEEEE
T ss_pred cHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEEEE
Confidence 99999999999999999999999942 55555 677999999999999875
No 6
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=2.1e-34 Score=278.93 Aligned_cols=290 Identities=20% Similarity=0.283 Sum_probs=203.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcC-----------------EEeeecCcccccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRG-----------------AKIQLLDLPGIIEGA 126 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g-----------------~~i~l~DtpG~~~~~ 126 (381)
+.+++|||+||||||||||+|+|... .++++||||++|+.|.+.+.| ..+.++|+||+..+.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 38999999999999999999999877 889999999999999999876 568999999999988
Q ss_pred cCCCcchhhhhcccCCcchhHHHHhcCC------------ChHHHHHHHHHHHhcccc-cccCcCcccceeeccccceee
Q 016864 127 KDGKGRGRQVISTARTCNCILIVLDAIK------------PITHKRLIEKELEGFGIR-LNKQPPNLTFRKKDKGGINFT 193 (381)
Q Consensus 127 ~~~~~~~~~~~~~~~~~d~il~vvd~~~------------~~~~~~~i~~~l~~~~~~-~~~~~~~ls~~~~~r~~~~i~ 193 (381)
+.+.+.+++++..++.+|++++|+|++. |..+...+.+.+..+... ..+.+..+..-. .+.+..+.
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~-~~~g~ti~ 178 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKIT-SRGANTLE 178 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCSSCSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHH-HhcCCccc
Confidence 8777777888888999999999999864 444666666666555441 111111111000 00010000
Q ss_pred ecccCCCCCHHHHHHHHHHhc--ccCC-ccccccCCChhHHHHHHhc--ccccccEEEEEecCCcC---C-HHHHHHHh-
Q 016864 194 STVTNTNLDLDTVKAICSEYR--IHNA-DITLRYDATADDLIDVIEG--SRIYMPCIYVINKIDQI---T-LEELEILD- 263 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~~l~~~~--~~~~-~~~~~~e~t~~~~~~~l~~--~~~~~p~i~v~NK~Dl~---~-~~~l~~l~- 263 (381)
....+.+..++..+. +... .....++|+.++. +.++. ....+|+++++|+.|.. . .++++.+.
T Consensus 179 ------sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~-e~i~~~~~lt~kp~~y~~Nv~e~~~~~~~~~~~~~~~~ 251 (392)
T 1ni3_A 179 ------MKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREV-EIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIKK 251 (392)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHH-HHHHTTCCGGGSCEEEEEECCHHHHTTTCCSSHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHHhccCCceeecCCCCHHHH-HHHHHHhhhccCceEEEEEecchhhcccchHHHHHHHH
Confidence 001123333333322 1222 2222367777743 55543 23358999999999842 1 22233322
Q ss_pred ---c-C--CCeeeecccc---------------------cccHHHHHHHHHHHcCCcEEEeCCCCCCCCCCCcEEecCCC
Q 016864 264 ---K-L--PHYCPVSAHL---------------------EWNLDGLLEKIWEYLNLTRIYTKPKGMNPDYEDPVILSSKK 316 (381)
Q Consensus 264 ---~-~--~~~v~vSa~~---------------------~~gl~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (381)
. . ..+|++||.. +.|+++|.+..++.|+++++||+++.+. .+.++++ |
T Consensus 252 ~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~l~~~ft~g~~e~----rawti~~-G 326 (392)
T 1ni3_A 252 WIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCGEDEV----RSWTIRK-G 326 (392)
T ss_dssp HHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEECCSSEE----EEEEEET-T
T ss_pred HHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhCCEEEECCCCCcc----eeEEeCC-C
Confidence 1 2 3689999987 5899999999999999999999886543 3455655 5
Q ss_pred CCHHHHHHHHHHHHHhcccEEEEecCC----------Ccc-CCee-eCCCcccccCCCCCCCC
Q 016864 317 RTVEDFCERIHKDMVKQFKYALVWGSS----------AKH-KPQR-VGKEHELEDEXXXXXXX 367 (381)
Q Consensus 317 ~~~~~~~~~i~~~~~~~f~~a~~~~~~----------~~~-~~~r-vg~~~~l~~~d~~~i~~ 367 (381)
+++.++|+.||+||+++|++|.+|+++ ++. +.+| .|++|+++||||+.+.-
T Consensus 327 ~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f~f 389 (392)
T 1ni3_A 327 TKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHWKA 389 (392)
T ss_dssp CBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEECC-
T ss_pred CcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEEEc
Confidence 999999999999999999999999543 232 3456 99999999999998753
No 7
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.85 E-value=2.5e-21 Score=186.55 Aligned_cols=195 Identities=25% Similarity=0.312 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEE
Q 016864 28 LGLLKAKLAKLRRELLTPTSKGGGGGGGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVI 107 (381)
Q Consensus 28 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i 107 (381)
.+.++.++.++++++......+... .....+.+..+|+|+|+||||||||+|+|+|....+++++|+|+|+..+.+
T Consensus 146 ~~~~~~~i~~l~~~l~~~~~~r~~~----r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i 221 (364)
T 2qtf_A 146 IKFYKRRINKLMKELESIKIFKEKS----IESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAI 221 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----------------CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEE
Confidence 3455666777766654332110000 002233454569999999999999999999998878899999999999999
Q ss_pred EEcCEEeeecCcccccccccCCC-cchhhhhcccCCcchhHHHHhcCCChHH-HHHHHHHHHhcccccccCcCcccceee
Q 016864 108 TYRGAKIQLLDLPGIIEGAKDGK-GRGRQVISTARTCNCILIVLDAIKPITH-KRLIEKELEGFGIRLNKQPPNLTFRKK 185 (381)
Q Consensus 108 ~~~g~~i~l~DtpG~~~~~~~~~-~~~~~~~~~~~~~d~il~vvd~~~~~~~-~~~i~~~l~~~~~~~~~~~~~ls~~~~ 185 (381)
.++|.++.++||||++...+... ..+...+..+..+|++++|+|++++... .+.+
T Consensus 222 ~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~----------------------- 278 (364)
T 2qtf_A 222 PINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETL----------------------- 278 (364)
T ss_dssp EETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHH-----------------------
T ss_pred EECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHH-----------------------
Confidence 99999999999999866433221 2233445567899999999999887421 1111
Q ss_pred ccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHH--H----H
Q 016864 186 DKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE--E----L 259 (381)
Q Consensus 186 ~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~--~----l 259 (381)
+.+..+|..++.. .+|+|+|.||+|+.+.. . .
T Consensus 279 ------------------~~~~~~L~~l~~~------------------------~~p~ilV~NK~Dl~~~~~~~~~~~~ 316 (364)
T 2qtf_A 279 ------------------QSSFEILREIGVS------------------------GKPILVTLNKIDKINGDLYKKLDLV 316 (364)
T ss_dssp ------------------HHHHHHHHHHTCC------------------------SCCEEEEEECGGGCCSCHHHHHHHH
T ss_pred ------------------HHHHHHHHHhCcC------------------------CCCEEEEEECCCCCCchHHHHHHHH
Confidence 1122333333211 26999999999997532 1 1
Q ss_pred ----HHH-hcCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 260 ----EIL-DKLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 260 ----~~l-~~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
..+ ...++++++||+++.|+++|.+.+.+.+.
T Consensus 317 ~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 317 EKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhc
Confidence 111 11225799999999999999999988765
No 8
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.84 E-value=1.2e-21 Score=187.14 Aligned_cols=162 Identities=36% Similarity=0.478 Sum_probs=126.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC-EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG-AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g-~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
...|+|+|.||||||||+|+|++....++++||||++|..+.+.+++ ..+.++||||+.+.++.+.+...+++..+..+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 45899999999999999999999888889999999999999999886 89999999999988777777778888778889
Q ss_pred chhHHHHhcCC---C--hHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCC
Q 016864 144 NCILIVLDAIK---P--ITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNA 218 (381)
Q Consensus 144 d~il~vvd~~~---~--~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~ 218 (381)
|++++|+|+++ . ..+.+.+..+|..+.-
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~----------------------------------------------- 270 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL----------------------------------------------- 270 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS-----------------------------------------------
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhh-----------------------------------------------
Confidence 99999999976 2 2222222222221100
Q ss_pred ccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH-HHHHh-cC---CCeeeecccccccHHHHHHHHHHHcCC
Q 016864 219 DITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-LEILD-KL---PHYCPVSAHLEWNLDGLLEKIWEYLNL 292 (381)
Q Consensus 219 ~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-l~~l~-~~---~~~v~vSa~~~~gl~~L~~~i~~~l~~ 292 (381)
....+|+++|+||+|+....+ ++.+. .+ .+++++||+++.|+++|++.+.+.+..
T Consensus 271 -------------------~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 271 -------------------RLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp -------------------STTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred -------------------hhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 001279999999999986533 33332 22 468999999999999999999998763
No 9
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.82 E-value=3.2e-21 Score=144.97 Aligned_cols=84 Identities=57% Similarity=0.995 Sum_probs=77.9
Q ss_pred HHHcCCcEEEeCCCCCCCCCCCcEEecCCCCCHHHHHHHHHHHHHhcccEEEEecCCCccCCeeeCCCcccccCCCCCCC
Q 016864 287 WEYLNLTRIYTKPKGMNPDYEDPVILSSKKRTVEDFCERIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELEDEXXXXXX 366 (381)
Q Consensus 287 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~f~~a~~~~~~~~~~~~rvg~~~~l~~~d~~~i~ 366 (381)
|+.|+++++||+++|..|++++|++|.+.++|++|+|+.||+++.++|+||+|||.++++.+||||.+|+|+|||||+|+
T Consensus 6 ~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv 85 (93)
T 2eki_A 6 SGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIV 85 (93)
T ss_dssp SSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEE
T ss_pred hhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEE
Confidence 45688999999999988899999999555799999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 016864 367 XXLF 370 (381)
Q Consensus 367 ~~~~ 370 (381)
++.-
T Consensus 86 ~~~~ 89 (93)
T 2eki_A 86 KKSG 89 (93)
T ss_dssp ECCS
T ss_pred eCCC
Confidence 8754
No 10
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.81 E-value=6.1e-20 Score=182.79 Aligned_cols=153 Identities=30% Similarity=0.350 Sum_probs=115.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc-ccccccccceeeeecEEEEEcCEEeeecCccccc-ccccCCCcch-hhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF-SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGII-EGAKDGKGRG-RQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~-~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~-~~~~~~~~~~-~~~~~~~~~ 142 (381)
.+|+|+|+||||||||+|+|++.. ..++++|+||+|+..+.+.++|.++.++||||+. +........+ ...+..++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~ 323 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 323 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhc
Confidence 899999999999999999999986 4579999999999999999999999999999997 5432222221 233456789
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|++++....+. .+++
T Consensus 324 aD~vl~VvD~s~~~s~~~~----------------------------------------------~il~----------- 346 (482)
T 1xzp_A 324 ADIVLFVLDASSPLDEEDR----------------------------------------------KILE----------- 346 (482)
T ss_dssp CSEEEEEEETTSCCCHHHH----------------------------------------------HHHH-----------
T ss_pred ccEEEEEecCCCCCCHHHH----------------------------------------------HHHH-----------
Confidence 9999999999876321110 1111
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH---HHHHHHhcC-CCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL---EELEILDKL-PHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~~l~~~-~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.+. .+|+|+|+||+|+... +++..+..+ .+++.+||+++.|+++|++.+.+.+
T Consensus 347 -----------~l~----~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 347 -----------RIK----NKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp -----------HHT----TSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred -----------Hhc----CCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 111 2699999999999743 334333222 4789999999999999999998864
No 11
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.81 E-value=1.3e-20 Score=187.44 Aligned_cols=158 Identities=20% Similarity=0.191 Sum_probs=94.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc-ccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcc-hhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF-SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGR-GRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~-~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~-~~~~~~~~~~~ 143 (381)
.+|+|+|+||||||||+|+|++.. ..++++|+||+|.....+.++|.++.++||||+.+........ .......++.+
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~a 313 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEA 313 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccC
Confidence 789999999999999999999986 4678999999999999999999999999999997633211111 12344567899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++....+ + .....++..+
T Consensus 314 D~vl~VvD~s~~~s~~~-~-----------------------------------------~~~~~~l~~l---------- 341 (476)
T 3gee_A 314 DLILYLLDLGTERLDDE-L-----------------------------------------TEIRELKAAH---------- 341 (476)
T ss_dssp SEEEEEEETTTCSSGGG-H-----------------------------------------HHHHHHHHHC----------
T ss_pred CEEEEEEECCCCcchhh-h-----------------------------------------HHHHHHHHhc----------
Confidence 99999999987642110 0 0111122221
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH--HHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE--ILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~--~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
. .+|+|+|+||+|+....... .+.. +.+++.+||+++.|+++|++.+.+.+.
T Consensus 342 ------------~----~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 342 ------------P----AAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ------------T----TSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ------------C----CCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 1 26999999999998544332 2322 478999999999999999999988764
No 12
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.81 E-value=5.7e-20 Score=172.86 Aligned_cols=157 Identities=27% Similarity=0.310 Sum_probs=114.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccC-CCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD-GKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~ 143 (381)
.+|+|+|.||||||||+|+|+|... .+++.|+||++...+.+.+++.++.++||||+.+.... +..+.......++.+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~a 87 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV 87 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcC
Confidence 3799999999999999999999875 46889999999999988888999999999998753210 000123344567899
Q ss_pred chhHHHHhcCCChHH-HHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 144 NCILIVLDAIKPITH-KRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 144 d~il~vvd~~~~~~~-~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
|++++|+|++++... ..++...+
T Consensus 88 d~il~VvD~~~~~~~~~~~i~~~l-------------------------------------------------------- 111 (301)
T 1wf3_A 88 NAVVWVVDLRHPPTPEDELVARAL-------------------------------------------------------- 111 (301)
T ss_dssp SEEEEEEETTSCCCHHHHHHHHHH--------------------------------------------------------
T ss_pred CEEEEEEECCCCCChHHHHHHHHH--------------------------------------------------------
Confidence 999999999875321 11111111
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH-H-H---HHhcCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-L-E---ILDKLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-l-~---~l~~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.......|+++|+||+|+..... + + .+..+.+++++||+++.|+++|++.+.+.++
T Consensus 112 -------------~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 112 -------------KPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp -------------GGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred -------------HhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 10000269999999999986443 3 2 2223456899999999999999999988765
No 13
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.81 E-value=3.8e-20 Score=170.14 Aligned_cols=151 Identities=24% Similarity=0.325 Sum_probs=111.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCC----C--cchhhhhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG----K--GRGRQVIST 139 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~----~--~~~~~~~~~ 139 (381)
++|+++|.||||||||+|+|+|....++++|++|++...+.+.+++..+.++||||+....+.+ . .....++ .
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~-~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV-I 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH-H
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH-h
Confidence 5899999999999999999999988899999999999999999999999999999997654311 0 0111111 2
Q ss_pred cCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCc
Q 016864 140 ARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNAD 219 (381)
Q Consensus 140 ~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~ 219 (381)
...+|++++|+|++++...... ...+
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~l------------------------------------------------~~~l------ 106 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLYL------------------------------------------------TSQL------ 106 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHHH------------------------------------------------HHHH------
T ss_pred hCCCCEEEEEeeCCCchhHHHH------------------------------------------------HHHH------
Confidence 2789999999999864321111 0010
Q ss_pred cccccCCChhHHHHHHhcccccccEEEEEecCCcCCHH----HHHHHh--cCCCeeeecccccccHHHHHHHHHHH
Q 016864 220 ITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE----ELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 220 ~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~----~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
. ...+|+++|+||+|+.... ..+.+. -..+++++||+++.|+++|++.+.+.
T Consensus 107 ----------------~--~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 107 ----------------F--ELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ----------------T--TSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ----------------H--HcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 0 0126999999999986432 122221 13579999999999999999999875
No 14
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.80 E-value=9.6e-20 Score=180.25 Aligned_cols=156 Identities=29% Similarity=0.366 Sum_probs=104.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCC--cchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK--GRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~--~~~~~~~~~~~~ 142 (381)
++|+|||.||||||||+|+|+|... .++++|++|+|...+.+.|+|..+.++||||+........ ....+....++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 5899999999999999999999765 4689999999999999999999999999999875332221 122344556799
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|+..+....+ ..+..++..
T Consensus 82 ad~il~V~D~~~~~~~~d-------------------------------------------~~i~~~l~~---------- 108 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED-------------------------------------------ESLADFLRK---------- 108 (439)
T ss_dssp CSEEEEEEETTTCCCHHH-------------------------------------------HHHHHHHHH----------
T ss_pred CCEEEEEEECCCCCCHHH-------------------------------------------HHHHHHHHH----------
Confidence 999999999876532111 011112211
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH-H-HH-HHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-E-EL-EILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-~-~l-~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
..+|+++|+||+|+... + .. ..+. .+..++++||.+|.|+++|++.+.+.++
T Consensus 109 -----------------~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 109 -----------------STVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp -----------------HTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----------------cCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 12799999999998643 1 11 2222 2346899999999999999999988764
No 15
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.80 E-value=2.1e-20 Score=185.28 Aligned_cols=155 Identities=26% Similarity=0.344 Sum_probs=108.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcc-hhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGR-GRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~-~~~~~~~~~~~ 143 (381)
.+|+|+|+||||||||+|+|++... .++++|+||+|.....+.++|.++.++||||+.+........ .......+..+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~a 304 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTA 304 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCSC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcC
Confidence 7899999999999999999999764 578899999999999999999999999999986642211111 12344567899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++..... ..++..
T Consensus 305 D~vl~VvD~s~~~~~~~----------------------------------------------~~i~~~----------- 327 (462)
T 3geh_A 305 DLVLLTIDAATGWTTGD----------------------------------------------QEIYEQ----------- 327 (462)
T ss_dssp SEEEEEEETTTCSCHHH----------------------------------------------HHHHHH-----------
T ss_pred CEEEEEeccCCCCCHHH----------------------------------------------HHHHHh-----------
Confidence 99999999987632211 011111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHH---hcCCCeeeecccccccHHHHHHHHHHHcCC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEIL---DKLPHYCPVSAHLEWNLDGLLEKIWEYLNL 292 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l---~~~~~~v~vSa~~~~gl~~L~~~i~~~l~~ 292 (381)
+. .+|+++|+||+|+........+ ....+++.+||+++.|+++|.+.+.+.+..
T Consensus 328 -----------l~----~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 328 -----------VK----HRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp -----------HT----TSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred -----------cc----CCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 11 1599999999999866543322 234578999999999999999999998753
No 16
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.79 E-value=6.5e-20 Score=170.29 Aligned_cols=154 Identities=23% Similarity=0.294 Sum_probs=112.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCC-c----chhhhhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK-G----RGRQVISTA 140 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~-~----~~~~~~~~~ 140 (381)
.+|+++|.+|||||||+|+|+|....++++|++|++...+.+.+++.++.++||||+.+...... . .........
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 83 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhh
Confidence 68999999999999999999999888899999999999999999999999999999876542110 0 011111123
Q ss_pred CCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcc
Q 016864 141 RTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADI 220 (381)
Q Consensus 141 ~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 220 (381)
..+|++++|+|+++......... . +.++
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~~~~--------------------------------------------~-l~~~------- 111 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLYLTL--------------------------------------------Q-LLEL------- 111 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHH--------------------------------------------H-HHHH-------
T ss_pred cCCCEEEEEecCCChHHHHHHHH--------------------------------------------H-HHhc-------
Confidence 78999999999876432111110 0 1110
Q ss_pred ccccCCChhHHHHHHhcccccccEEEEEecCCcCCHH----HHHHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 221 TLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE----ELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 221 ~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~----~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.+|+++|+||+|+.... ..+.+. -..+++++||+++.|+++|++.+.+.+.
T Consensus 112 --------------------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 112 --------------------GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp --------------------TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred --------------------CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 26999999999986432 122221 1257899999999999999999988664
No 17
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.79 E-value=2e-19 Score=175.67 Aligned_cols=171 Identities=32% Similarity=0.506 Sum_probs=125.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC-EEeeecCcccccccccCCCcchhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG-AKIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g-~~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
++++.......|+|||+||||||||+|+|++....++++||||+++..|.+.+++ ..+.++|+||+.+....+......
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~ 228 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLE 228 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHH
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHH
Confidence 3444444457999999999999999999999988889999999999999999886 889999999998876555555556
Q ss_pred hhcccCCcchhHHHHhcC-CChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhc
Q 016864 136 VISTARTCNCILIVLDAI-KPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYR 214 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~-~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~ 214 (381)
++..+..++.+++++|++ .+..+......++..+. .
T Consensus 229 fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la-------------------------------------~------ 265 (416)
T 1udx_A 229 FLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYD-------------------------------------P------ 265 (416)
T ss_dssp HHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHC-------------------------------------H------
T ss_pred HHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHh-------------------------------------H------
Confidence 666667899999999986 33322222222111000 0
Q ss_pred ccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHH----hc-CCCeeeecccccccHHHHHHHHHHH
Q 016864 215 IHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEIL----DK-LPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 215 ~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l----~~-~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
.+ ..+|.|+|+||+|+...+.++.+ .. ...++++||+++.|+++|++.+++.
T Consensus 266 -------------------aL----~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~ 322 (416)
T 1udx_A 266 -------------------AL----LRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHAL 322 (416)
T ss_dssp -------------------HH----HHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -------------------Hh----hcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHH
Confidence 00 12699999999999876433322 22 2368999999999999999999987
Q ss_pred cCCc
Q 016864 290 LNLT 293 (381)
Q Consensus 290 l~~~ 293 (381)
+...
T Consensus 323 l~~~ 326 (416)
T 1udx_A 323 VRST 326 (416)
T ss_dssp HHTS
T ss_pred HHhc
Confidence 7543
No 18
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.79 E-value=2.4e-20 Score=160.84 Aligned_cols=158 Identities=19% Similarity=0.178 Sum_probs=109.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCc-chhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG-RGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~-~~~~~~~~~~~~ 143 (381)
.+|+++|+||||||||+|+|++... .++++|+||++...+.+.+++.++.++||||+.+....-.. .....+..++.+
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~a 84 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 84 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhC
Confidence 7999999999999999999999764 46889999999999999999999999999998643210000 011223346889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++..... ..++ ..+...
T Consensus 85 d~~i~v~D~~~~~s~~~--~~~~-----------------------------------------~~~~~~---------- 111 (172)
T 2gj8_A 85 DRVLFMVDGTTTDAVDP--AEIW-----------------------------------------PEFIAR---------- 111 (172)
T ss_dssp SEEEEEEETTTCCCCSH--HHHC-----------------------------------------HHHHHH----------
T ss_pred CEEEEEEECCCCCCHHH--HHHH-----------------------------------------HHHHHh----------
Confidence 99999999976532100 0000 000000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH-HHHHHhcCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-ELEILDKLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-~l~~l~~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
....+|+++|+||+|+.... .... ....+++.+||+++.|++++++.+.+.+.
T Consensus 112 --------------~~~~~p~ilv~NK~Dl~~~~~~~~~-~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 112 --------------LPAKLPITVVRNKADITGETLGMSE-VNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp --------------SCTTCCEEEEEECHHHHCCCCEEEE-ETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred --------------cccCCCEEEEEECccCCcchhhhhh-ccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 00126999999999985321 0000 11235789999999999999999998775
No 19
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.78 E-value=2.5e-19 Score=169.16 Aligned_cols=157 Identities=34% Similarity=0.438 Sum_probs=115.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc-ccccccceeeeecEEEEEc-CEEeeecCcccccccccC---CCcchhhhhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE-VASYEFTTLTCIPGVITYR-GAKIQLLDLPGIIEGAKD---GKGRGRQVISTA 140 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~-~~~~~~tT~~~~~g~i~~~-g~~i~l~DtpG~~~~~~~---~~~~~~~~~~~~ 140 (381)
-.|+++|.||||||||+|+|+|.... +++.|+||++...+.+..+ +.++.++||||+.+.... +..+.......+
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 49999999999999999999998754 6899999999999999998 999999999999764310 011122333456
Q ss_pred CCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcc
Q 016864 141 RTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADI 220 (381)
Q Consensus 141 ~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~ 220 (381)
+.+|++++|+|++++....+ ...++..+
T Consensus 91 ~~aD~il~VvD~~~~~~~~~---------------------------------------------~~~~~~~l------- 118 (308)
T 3iev_A 91 EEADVILFMIDATEGWRPRD---------------------------------------------EEIYQNFI------- 118 (308)
T ss_dssp HHCSEEEEEEETTTBSCHHH---------------------------------------------HHHHHHHT-------
T ss_pred hcCCEEEEEEeCCCCCCchh---------------------------------------------HHHHHHHH-------
Confidence 88999999999987532111 00001111
Q ss_pred ccccCCChhHHHHHHhcccccccEEEEEecCCcC-CHHH----HHHH---h-cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 221 TLRYDATADDLIDVIEGSRIYMPCIYVINKIDQI-TLEE----LEIL---D-KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 221 ~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~-~~~~----l~~l---~-~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.. ...|+++|+||+|+. ..+. ++.+ . .+.+++++||.++.|+++|++.+.+.++
T Consensus 119 ---------------~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 119 ---------------KP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp ---------------GG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ---------------Hh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 11 126999999999997 4332 2222 2 3567999999999999999999999886
No 20
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.78 E-value=3.6e-19 Score=167.50 Aligned_cols=155 Identities=25% Similarity=0.344 Sum_probs=112.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCccccc-ccccC-CCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGII-EGAKD-GKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~-~~~~~-~~~~~~~~~~~~~~ 142 (381)
..|+|+|+||||||||+|+|+|... .+++.|+||++...|.+.+++.++.++||||+. ..... +..+.......+..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~ 88 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD 88 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhc
Confidence 4899999999999999999999875 457889999999999999999999999999986 22100 00111233456789
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|+.+.......+.+
T Consensus 89 ~D~vl~Vvd~~~~~~~~~~i~~---------------------------------------------------------- 110 (301)
T 1ega_A 89 VELVIFVVEGTRWTPDDEMVLN---------------------------------------------------------- 110 (301)
T ss_dssp EEEEEEEEETTCCCHHHHHHHH----------------------------------------------------------
T ss_pred CCEEEEEEeCCCCCHHHHHHHH----------------------------------------------------------
Confidence 9999999998662211111111
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCC-HHHH----HHHhc---CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQIT-LEEL----EILDK---LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-~~~l----~~l~~---~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.+.. ...|.++++||+|+.. .+.+ +.+.+ +..++++||+++.|+++|++.+...++
T Consensus 111 -----------~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 111 -----------KLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp -----------HHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred -----------HHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 1111 1269999999999987 4332 33332 235899999999999999999998775
No 21
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.78 E-value=6.3e-19 Score=148.99 Aligned_cols=154 Identities=29% Similarity=0.337 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
.+|+++|++|||||||+|+|++... ..++++++|.+.....+.+++..+.++||||..................++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 5899999999999999999998764 367889999999999999999999999999986532111011122334568999
Q ss_pred hhHHHHhcCCChHHH-HHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 145 CILIVLDAIKPITHK-RLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 145 ~il~vvd~~~~~~~~-~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
++++|+|+.++.... ..+.. ++..
T Consensus 82 ~~i~v~d~~~~~~~~~~~~~~--------------------------------------------~~~~----------- 106 (161)
T 2dyk_A 82 VVLFAVDGRAELTQADYEVAE--------------------------------------------YLRR----------- 106 (161)
T ss_dssp EEEEEEESSSCCCHHHHHHHH--------------------------------------------HHHH-----------
T ss_pred EEEEEEECCCcccHhHHHHHH--------------------------------------------HHHh-----------
Confidence 999999998753221 11111 1111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH-HHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-ELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
...|+++|+||+|+.... +...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 107 ----------------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 107 ----------------KGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ----------------HTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ----------------cCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 126999999999997542 2222222 33689999999999999999998765
No 22
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.77 E-value=6.7e-19 Score=150.45 Aligned_cols=152 Identities=24% Similarity=0.318 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCC--cchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK--GRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~--~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|+|....++++|++|++...+.+.+++..+.++||||......... ......+ ....+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ 82 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYI-INEKP 82 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHH-HHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHH-hcCCC
Confidence 58999999999999999999998777788999999999999999999999999999865422110 0011111 11378
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.+......+ +..+
T Consensus 83 ~~~i~v~D~~~~~~~~~~------------------------------------------------~~~~---------- 104 (165)
T 2wji_A 83 DLVVNIVDATALERNLYL------------------------------------------------TLQL---------- 104 (165)
T ss_dssp SEEEEEEETTCHHHHHHH------------------------------------------------HHHH----------
T ss_pred CEEEEEecCCchhHhHHH------------------------------------------------HHHH----------
Confidence 999999998763211111 1000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH----HHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE----ELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~----~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. ..+|+++|+||+|+.... +.+.+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 105 ------------~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 105 ------------ME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp ------------HH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred ------------Hh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 00 026999999999986321 1222211 24689999999999999999998754
No 23
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.77 E-value=9.8e-19 Score=160.89 Aligned_cols=153 Identities=30% Similarity=0.375 Sum_probs=112.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCc--chhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG--RGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~--~~~~~~~~~~~~ 143 (381)
.+|+++|.||||||||+|+|+|....++++|++|++...+.+.+++..+.++||||.....+.... ....++ ....+
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~-~~~~~ 84 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYL-LKGDA 84 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHH-HHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHH-hhcCC
Confidence 689999999999999999999988888999999999999999999999999999998765322110 111221 12589
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+++......+.... ..
T Consensus 85 d~ii~V~D~t~~~~~~~~~~~l---------------------------------------------~~----------- 108 (258)
T 3a1s_A 85 DLVILVADSVNPEQSLYLLLEI---------------------------------------------LE----------- 108 (258)
T ss_dssp SEEEEEEETTSCHHHHHHHHHH---------------------------------------------HT-----------
T ss_pred CEEEEEeCCCchhhHHHHHHHH---------------------------------------------Hh-----------
Confidence 9999999998764322111110 00
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH----HHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE----ELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~----~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
...|+++|+||+|+.... +.+.+.. ..+++++||+++.|+++|++.+.+...
T Consensus 109 ----------------~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 109 ----------------MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp ----------------TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------------cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 126999999999986321 1222211 247899999999999999999988653
No 24
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.76 E-value=1e-17 Score=161.30 Aligned_cols=163 Identities=28% Similarity=0.337 Sum_probs=114.6
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcc-h-hhhhcccC
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGR-G-RQVISTAR 141 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~-~-~~~~~~~~ 141 (381)
+..+|+++|+||||||||+|+|+|....++++|++|.+...+.+..++..+.++||||+.......... . ........
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 245 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRY 245 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHh
Confidence 347999999999999999999999887778899999999999988889999999999987643221111 1 11122335
Q ss_pred CcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccc
Q 016864 142 TCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADIT 221 (381)
Q Consensus 142 ~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 221 (381)
.+|++++|+|++.+.. ++.+....++..+
T Consensus 246 ~ad~illV~D~s~~~~-------------------------------------------~~~~~~~~~~~~i-------- 274 (357)
T 2e87_A 246 LGNLIIYIFDPSEHCG-------------------------------------------FPLEEQIHLFEEV-------- 274 (357)
T ss_dssp TCSEEEEEECTTCTTS-------------------------------------------SCHHHHHHHHHHH--------
T ss_pred cCCEEEEEEeCCcccc-------------------------------------------CCHHHHHHHHHHH--------
Confidence 6899999999876420 0111111111111
Q ss_pred cccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHH-----hcCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 222 LRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEIL-----DKLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 222 ~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l-----~~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
..... .+|+|+|+||+|+.....++.. ....+++.+||++|.|+++|.+.+.+.+.
T Consensus 275 ----------~~~~~----~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 275 ----------HGEFK----DLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp ----------HHHTT----TSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred ----------HHhcC----CCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 00000 2699999999999876544322 12356899999999999999999988663
No 25
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.76 E-value=4.1e-19 Score=164.58 Aligned_cols=152 Identities=22% Similarity=0.307 Sum_probs=108.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCC--cchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK--GRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~--~~~~~~~~~~~~~ 143 (381)
.+|+|+|.||||||||+|+|+|....++++||+|++...|.+.+ +..+.++||||......... .....++ ....+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~-~~~~~ 81 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYL-LSQRA 81 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHH-HTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHH-hcCCC
Confidence 68999999999999999999998888899999999998888866 78899999999876432110 0112222 11469
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+++......+.. .+ .+
T Consensus 82 d~vi~V~D~t~~e~~~~~~~--------------------------------------------~l-~~----------- 105 (272)
T 3b1v_A 82 DSILNVVDATNLERNLYLTT--------------------------------------------QL-IE----------- 105 (272)
T ss_dssp SEEEEEEEGGGHHHHHHHHH--------------------------------------------HH-HH-----------
T ss_pred CEEEEEecCCchHhHHHHHH--------------------------------------------HH-Hh-----------
Confidence 99999999876422111100 00 00
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH----HHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE----ELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~----~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
..+|+++|+||+|+.... +.+.+.. ..+++++||+++.|+++|++.+.+.+.
T Consensus 106 ----------------~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 106 ----------------TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp ----------------TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred ----------------cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 126999999999986321 1222211 246899999999999999999988653
No 26
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.76 E-value=1.7e-18 Score=160.38 Aligned_cols=155 Identities=23% Similarity=0.267 Sum_probs=112.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCc-chhhhhcccCCcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG-RGRQVISTARTCN 144 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~-~~~~~~~~~~~~d 144 (381)
.+|+++|+||||||||+|+|+|....++++|++|.+...+.+.+++..+.++||||+......... ...........+|
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 83 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNAD 83 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCc
Confidence 689999999999999999999998888999999999999999999999999999998764332110 0111111236899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|++.+......... ++.
T Consensus 84 ~vi~v~D~~~~~~~~~~~~~--------------------------------------------~~~------------- 106 (271)
T 3k53_A 84 VIVDIVDSTCLMRNLFLTLE--------------------------------------------LFE------------- 106 (271)
T ss_dssp EEEEEEEGGGHHHHHHHHHH--------------------------------------------HHH-------------
T ss_pred EEEEEecCCcchhhHHHHHH--------------------------------------------HHh-------------
Confidence 99999999765322111111 000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCHHH----HHHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITLEE----LEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~----l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.. .+|+++|+||+|+..... .+.+. -..+++++||.++.|++++++.+.+.+.
T Consensus 107 ------------~~--~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 107 ------------ME--VKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp ------------TT--CCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred ------------cC--CCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 00 159999999999763221 22221 1257899999999999999999988764
No 27
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=2.9e-18 Score=169.64 Aligned_cols=156 Identities=24% Similarity=0.331 Sum_probs=102.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccC---CCcc--hhhhh
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD---GKGR--GRQVI 137 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~---~~~~--~~~~~ 137 (381)
+..+|+|+|+||||||||+|+|+|... .++++|+||+++..|.+.++|..+.++||||+...... .... .....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 347999999999999999999999874 57999999999999999999999999999998543221 1111 11223
Q ss_pred cccCCcchhHHHHhcCCChHHH-HHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhccc
Q 016864 138 STARTCNCILIVLDAIKPITHK-RLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIH 216 (381)
Q Consensus 138 ~~~~~~d~il~vvd~~~~~~~~-~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~ 216 (381)
..++.+|++++|+|+..+.... ..+. ..+..
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~~i~--------------------------------------------~~l~~---- 290 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQRMA--------------------------------------------GLMER---- 290 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHH--------------------------------------------HHHHH----
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHH--------------------------------------------HHHHH----
Confidence 3456788888998987653211 1111 11111
Q ss_pred CCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH-----H-HH----Hh--cCCCeeeecccccccHHHHHH
Q 016864 217 NADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-----L-EI----LD--KLPHYCPVSAHLEWNLDGLLE 284 (381)
Q Consensus 217 ~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-----l-~~----l~--~~~~~v~vSa~~~~gl~~L~~ 284 (381)
..+|+++|+||+|+..... + +. +. .+.+++++||++|.|+++|++
T Consensus 291 -----------------------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 291 -----------------------RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp -----------------------TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHH
T ss_pred -----------------------cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHH
Confidence 1269999999999975321 1 11 11 245789999999999999998
Q ss_pred HHHHHc
Q 016864 285 KIWEYL 290 (381)
Q Consensus 285 ~i~~~l 290 (381)
.+.+.+
T Consensus 348 ~i~~~~ 353 (439)
T 1mky_A 348 AMNLAY 353 (439)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 28
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.75 E-value=7.3e-19 Score=157.32 Aligned_cols=158 Identities=20% Similarity=0.139 Sum_probs=110.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhccc--ccccccccceeeeecEEEE-EcCEEeeecCcccccccccCCC------cchh
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTF--SEVASYEFTTLTCIPGVIT-YRGAKIQLLDLPGIIEGAKDGK------GRGR 134 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~--~~~~~~~~tT~~~~~g~i~-~~g~~i~l~DtpG~~~~~~~~~------~~~~ 134 (381)
...+|+++|.+|||||||+|+|++.. ..+++.+++|.+.....+. +++..+.++||||+........ ....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 34799999999999999999999986 3678899999988766665 4568999999999754321110 1122
Q ss_pred hhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhc
Q 016864 135 QVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYR 214 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~ 214 (381)
.++.....+|++++|+|+.++...... .++..
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~----------------------------------------------~~~~~-- 139 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDR----------------------------------------------RMIEW-- 139 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH----------------------------------------------HHHHH--
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHH----------------------------------------------HHHHH--
Confidence 333345568889999999865321110 11111
Q ss_pred ccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----H----HHh--------cCCCeeeeccccccc
Q 016864 215 IHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----E----ILD--------KLPHYCPVSAHLEWN 278 (381)
Q Consensus 215 ~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~----~l~--------~~~~~v~vSa~~~~g 278 (381)
+.. ..+|+++|+||+|+...... + .+. ...+++++||+++.|
T Consensus 140 --------------------l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~g 197 (223)
T 4dhe_A 140 --------------------FAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTG 197 (223)
T ss_dssp --------------------HGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBS
T ss_pred --------------------HHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcC
Confidence 111 12699999999999875442 1 122 234689999999999
Q ss_pred HHHHHHHHHHHcC
Q 016864 279 LDGLLEKIWEYLN 291 (381)
Q Consensus 279 l~~L~~~i~~~l~ 291 (381)
+++|++.+.+.+.
T Consensus 198 v~~l~~~l~~~~~ 210 (223)
T 4dhe_A 198 LDDAHALIESWLR 210 (223)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999876
No 29
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.75 E-value=9.3e-18 Score=144.28 Aligned_cols=150 Identities=23% Similarity=0.241 Sum_probs=108.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
..+|+++|.+|||||||+|+|++........+++|.+.....+.+++..+.++||||...... .....+..+|
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d 80 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT-------MRARGAQVTD 80 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC-------SCCSSCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH-------HHHHHHhhCC
Confidence 379999999999999999999998766677888888888888999999999999999754321 1123457899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|+.++..... . ..+..+
T Consensus 81 ~~i~v~d~~~~~~~~~-~---------------------------------------------~~l~~~----------- 103 (178)
T 2lkc_A 81 IVILVVAADDGVMPQT-V---------------------------------------------EAINHA----------- 103 (178)
T ss_dssp EEEEEEETTCCCCHHH-H---------------------------------------------HHHHHH-----------
T ss_pred EEEEEEECCCCCcHHH-H---------------------------------------------HHHHHH-----------
Confidence 9999999876521100 0 011110
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH--HHHH-HHhc-------C---CCeeeecccccccHHHHHHHHHHHcC
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL--EELE-ILDK-------L---PHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~--~~l~-~l~~-------~---~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
. ....|+++|+||+|+... +.+. .+.. + .+++.+||+++.|++++++.+.+.+.
T Consensus 104 -----------~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 104 -----------K--AANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp -----------G--GGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred -----------H--hCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 0 012699999999999853 3332 2211 1 25889999999999999999987654
No 30
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=142.42 Aligned_cols=151 Identities=18% Similarity=0.125 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........|++|.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 82 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFR-------TITSTYYRGT 82 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCS-------SCCGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhh-------hhHHHHhccC
Confidence 6999999999999999999999876666778888888888888888 678899999964432 1222346889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++... +.+.. ++..+
T Consensus 83 d~~i~v~d~~~~~s~-~~~~~--------------------------------------------~~~~~---------- 107 (181)
T 3tw8_B 83 HGVIVVYDVTSAESF-VNVKR--------------------------------------------WLHEI---------- 107 (181)
T ss_dssp SEEEEEEETTCHHHH-HHHHH--------------------------------------------HHHHH----------
T ss_pred CEEEEEEECCCHHHH-HHHHH--------------------------------------------HHHHH----------
Confidence 999999999875321 11111 11111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.......|+++|+||+|+... ++...+. ...+++.+||+++.|++++++.+.+.+
T Consensus 108 ------------~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 108 ------------NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp ------------HHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------HHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 000112699999999998632 2222221 234789999999999999999987754
No 31
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=7.3e-18 Score=166.60 Aligned_cols=157 Identities=21% Similarity=0.247 Sum_probs=103.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccC--CCcch--hhhhc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD--GKGRG--RQVIS 138 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~--~~~~~--~~~~~ 138 (381)
+..+|+++|.||||||||+|+|+|... .++++++||++.....+.++|..+.++||||+.+.... ..... ...+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 347999999999999999999999875 47899999999999999999999999999999764431 11111 12233
Q ss_pred ccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCC
Q 016864 139 TARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNA 218 (381)
Q Consensus 139 ~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~ 218 (381)
.++.+|++++|+|++++....+. .++..
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~----------------------------------------------~~~~~------ 281 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK----------------------------------------------RIAGY------ 281 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH----------------------------------------------HHHHH------
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH----------------------------------------------HHHHH------
Confidence 56789999999999876322110 01110
Q ss_pred ccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHH-----HH-HHH----h--cCCCeeeecccccccHHHHHHHH
Q 016864 219 DITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-----EL-EIL----D--KLPHYCPVSAHLEWNLDGLLEKI 286 (381)
Q Consensus 219 ~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-----~l-~~l----~--~~~~~v~vSa~~~~gl~~L~~~i 286 (381)
+.. ..+|+|+|+||+|+.... ++ +.+ . .+.+++++||++|.|++++++.+
T Consensus 282 ----------------~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i 343 (436)
T 2hjg_A 282 ----------------AHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAI 343 (436)
T ss_dssp ----------------HHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHH
T ss_pred ----------------HHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHH
Confidence 000 126999999999997421 12 111 1 24579999999999999988776
Q ss_pred HHHc
Q 016864 287 WEYL 290 (381)
Q Consensus 287 ~~~l 290 (381)
.+.+
T Consensus 344 ~~~~ 347 (436)
T 2hjg_A 344 IKAS 347 (436)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 32
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=7.1e-19 Score=173.85 Aligned_cols=155 Identities=21% Similarity=0.272 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccC-CCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD-GKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~ 143 (381)
.+|+|||.||||||||+|+|+|... .+++.|++|+|...+.+.+++..+.++||||+...... ......+....++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999764 46899999999999999999999999999998632211 001123344467889
Q ss_pred chhHHHHhcCCChHHHH-HHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 144 NCILIVLDAIKPITHKR-LIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~-~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
|++++|+|+..+....+ .+. .+
T Consensus 84 d~il~vvD~~~~~~~~d~~~~--------------------------------------------~~------------- 106 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVA--------------------------------------------KI------------- 106 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHH--------------------------------------------HH-------------
T ss_pred CEEEEEEeCCCCCCHHHHHHH--------------------------------------------HH-------------
Confidence 99999999987632211 111 11
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH-HHHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-LEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+.. ..+|+++|+||+|+..... ...+. .+..++++||.+|.|+++|++.+.+.++
T Consensus 107 ------------l~~--~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 107 ------------LYR--TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp ------------HTT--CCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred ------------HHH--cCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 111 1379999999999875321 11111 2346899999999999999999998774
No 33
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=8.6e-18 Score=167.04 Aligned_cols=156 Identities=22% Similarity=0.251 Sum_probs=107.2
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhccc-ccccccccceeeeecEEEEEcCEEeeecCcccccccccCC--Ccc--hhhhhc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTF-SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG--KGR--GRQVIS 138 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~-~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~--~~~--~~~~~~ 138 (381)
...+|+++|.+|+|||||+|+|++.. ..++++++||+++....+.+++..+.++||||+.+..... ... ....+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 273 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 273 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHH
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHH
Confidence 34799999999999999999999876 4678999999999999999999999999999987643211 111 122334
Q ss_pred ccCCcchhHHHHhcCCChHHH-HHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccC
Q 016864 139 TARTCNCILIVLDAIKPITHK-RLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHN 217 (381)
Q Consensus 139 ~~~~~d~il~vvd~~~~~~~~-~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~ 217 (381)
.++.+|++++|+|+..+..+. ..+..+ +..
T Consensus 274 ~~~~ad~~llviD~~~~~~~~~~~~~~~--------------------------------------------~~~----- 304 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGIIEQDKRIAGY--------------------------------------------AHE----- 304 (456)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHH--------------------------------------------HHH-----
T ss_pred HHhhCCEEEEEEeCCCCcCHHHHHHHHH--------------------------------------------HHH-----
Confidence 567899999999998763221 111111 110
Q ss_pred CccccccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHH-HHHh------cCCCeeeecccccccHHHHHHH
Q 016864 218 ADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EEL-EILD------KLPHYCPVSAHLEWNLDGLLEK 285 (381)
Q Consensus 218 ~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l-~~l~------~~~~~v~vSa~~~~gl~~L~~~ 285 (381)
..+|+|+|+||+|+... ++. +.+. .+.+++++||+++.|++++++.
T Consensus 305 ----------------------~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 362 (456)
T 4dcu_A 305 ----------------------AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPA 362 (456)
T ss_dssp ----------------------TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHH
T ss_pred ----------------------cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHH
Confidence 12699999999999742 222 1111 2468999999999999999887
Q ss_pred HHHHc
Q 016864 286 IWEYL 290 (381)
Q Consensus 286 i~~~l 290 (381)
+.+.+
T Consensus 363 i~~~~ 367 (456)
T 4dcu_A 363 IIKAS 367 (456)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 34
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=1.8e-17 Score=144.08 Aligned_cols=153 Identities=23% Similarity=0.315 Sum_probs=108.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCC--cchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK--GRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~--~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++....++.+|++|.++..+.+.+++..+.++||||......... ......+ ....+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ 86 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYI-INEKP 86 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHH-HHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHH-hccCC
Confidence 69999999999999999999998777788999999999999999999999999999865421100 0011111 11357
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|........ .++..+
T Consensus 87 ~~~i~v~d~~~~~~~~------------------------------------------------~~~~~~---------- 108 (188)
T 2wjg_A 87 DLVVNIVDATALERNL------------------------------------------------YLTLQL---------- 108 (188)
T ss_dssp SEEEEEEEGGGHHHHH------------------------------------------------HHHHHH----------
T ss_pred CEEEEEecchhHHHHH------------------------------------------------HHHHHH----------
Confidence 8888888876422111 111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH----HHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE----ELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~----~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.. ...|+++|+||+|+.... ..+.+.. ..+++++||+++.|++++++.+.+.+.
T Consensus 109 ------------~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~ 168 (188)
T 2wjg_A 109 ------------ME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVK 168 (188)
T ss_dssp ------------HT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHT
T ss_pred ------------Hh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 00 126999999999986321 2222221 247899999999999999999998775
No 35
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.71 E-value=2.6e-17 Score=148.23 Aligned_cols=161 Identities=20% Similarity=0.270 Sum_probs=105.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcc--hhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGR--GRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~--~~~~~~~~~~ 142 (381)
..+|+++|.+|||||||+|+|++.....++++++|.+...+.+.+++..+.++||||+.+........ ..........
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHI 108 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhcc
Confidence 47999999999999999999999876677889999999999888889999999999986532111100 1111123477
Q ss_pred cchhHHHHhcCCChH-HHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccc
Q 016864 143 CNCILIVLDAIKPIT-HKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADIT 221 (381)
Q Consensus 143 ~d~il~vvd~~~~~~-~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 221 (381)
+|++++|+|++++.. +... ...++..+
T Consensus 109 ~d~~i~v~d~~~~~s~~~~~--------------------------------------------~~~~~~~l-------- 136 (228)
T 2qu8_A 109 NGVILFIIDISEQCGLTIKE--------------------------------------------QINLFYSI-------- 136 (228)
T ss_dssp SEEEEEEEETTCTTSSCHHH--------------------------------------------HHHHHHHH--------
T ss_pred ccEEEEEEecccccCcchHH--------------------------------------------HHHHHHHH--------
Confidence 899999999987531 0000 00111111
Q ss_pred cccCCChhHHHHHHhcccccccEEEEEecCCcCCHH--------HHHHHhc-C---CCeeeecccccccHHHHHHHHHHH
Q 016864 222 LRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE--------ELEILDK-L---PHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 222 ~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~--------~l~~l~~-~---~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
.......|+++|+||+|+.... .+..+.. . .+++.+||+++.|++++++.+.+.
T Consensus 137 --------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 137 --------------KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACEL 202 (228)
T ss_dssp --------------HTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred --------------HHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHH
Confidence 1100126999999999997432 1222222 2 468999999999999999999876
Q ss_pred cC
Q 016864 290 LN 291 (381)
Q Consensus 290 l~ 291 (381)
+.
T Consensus 203 i~ 204 (228)
T 2qu8_A 203 LK 204 (228)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 36
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.71 E-value=1.9e-17 Score=151.33 Aligned_cols=91 Identities=20% Similarity=0.226 Sum_probs=66.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccc--cceeeeecEEEEEcCEEeeecCcccccccccCC-Ccchhhhhc---
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYE--FTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG-KGRGRQVIS--- 138 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~--~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~-~~~~~~~~~--- 138 (381)
..+|+|+|.+|||||||+|+|+|....++.++ ++|.++..+.+.+++..+.++||||+.+..... .........
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~ 100 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYL 100 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHH
Confidence 37999999999999999999999887665544 489999999999999999999999997543211 112222222
Q ss_pred -ccCCcchhHHHHhcCCC
Q 016864 139 -TARTCNCILIVLDAIKP 155 (381)
Q Consensus 139 -~~~~~d~il~vvd~~~~ 155 (381)
..+.+|++++|+|+...
T Consensus 101 ~~~~~~d~il~V~d~~~~ 118 (247)
T 3lxw_A 101 LSAPGPHALLLVTQLGRF 118 (247)
T ss_dssp HHTTCCSEEEEEEETTBC
T ss_pred hcCCCCCEEEEEEeCCCC
Confidence 23899999999998753
No 37
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.70 E-value=1e-16 Score=140.16 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=101.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|++|||||||++++++.... . ...|..+..+.+.+++..+.++||||...... .....++.+|+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 93 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--T-LQPTWHPTSEELAIGNIKFTTFDLGGHIQARR-------LWKDYFPEVNG 93 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCCSCEEEEEEETTEEEEEEECCCSGGGTT-------SGGGGCTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--c-cccCCCCCeEEEEECCEEEEEEECCCCHHHHH-------HHHHHHhcCCE
Confidence 69999999999999999999976532 2 23466667788999999999999999755321 12234578999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|++++..- +.+.. .+..+
T Consensus 94 ~i~v~d~~~~~s~-~~~~~--------------------------------------------~~~~~------------ 116 (190)
T 1m2o_B 94 IVFLVDAADPERF-DEARV--------------------------------------------ELDAL------------ 116 (190)
T ss_dssp EEEEEETTCGGGH-HHHHH--------------------------------------------HHHHH------------
T ss_pred EEEEEECCChHHH-HHHHH--------------------------------------------HHHHH------------
Confidence 9999999876321 11111 11110
Q ss_pred CChhHHHHHHhc-ccccccEEEEEecCCcCC---HHHHHHHhc--------------CCCeeeecccccccHHHHHHHHH
Q 016864 226 ATADDLIDVIEG-SRIYMPCIYVINKIDQIT---LEELEILDK--------------LPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 226 ~t~~~~~~~l~~-~~~~~p~i~v~NK~Dl~~---~~~l~~l~~--------------~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
+.. .....|+++|+||+|+.. .+++..... ..+++.+||+++.|++++++.+.
T Consensus 117 ---------~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 117 ---------FNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp ---------HTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred ---------HcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence 000 011269999999999974 344433221 12478999999999999999887
Q ss_pred HH
Q 016864 288 EY 289 (381)
Q Consensus 288 ~~ 289 (381)
+.
T Consensus 188 ~~ 189 (190)
T 1m2o_B 188 QY 189 (190)
T ss_dssp TT
T ss_pred hh
Confidence 53
No 38
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=139.82 Aligned_cols=153 Identities=18% Similarity=0.108 Sum_probs=108.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++........|.+|.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 89 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 89 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC-------TTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHHhhC
Confidence 6999999999999999999998776666778888888888888887 568899999964432 1222345889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+. .++..+.
T Consensus 90 d~~i~v~d~~~~~s-~~~~~--------------------------------------------~~~~~i~--------- 115 (196)
T 3tkl_A 90 HGIIVVYDVTDQES-FNNVK--------------------------------------------QWLQEID--------- 115 (196)
T ss_dssp SEEEEEEETTCHHH-HHTHH--------------------------------------------HHHHHHH---------
T ss_pred CEEEEEEECcCHHH-HHHHH--------------------------------------------HHHHHHH---------
Confidence 99999999987532 11111 1111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
. . .....|+++|+||+|+... +....+. ...+++.+||+++.|++++++.+.+.+.
T Consensus 116 ---------~-~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 116 ---------R-Y--ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp ---------H-H--SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 0 0112699999999998743 2233332 2347899999999999999998877653
No 39
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=9.5e-17 Score=139.60 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=100.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|.+|||||||+|+|++.... . ...|++.....+.+++..+.++||||..... ......++.+|+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~ 86 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVV-H--TSPTIGSNVEEIVINNTRFLMWDIGGQESLR-------SSWNTYYTNTEF 86 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCE-E--EECCSCSSCEEEEETTEEEEEEECCC----C-------GGGHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-c--CcCCCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCCE
Confidence 79999999999999999999975433 1 1235555667788899999999999985432 112234588999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|++++.. .+.+. .++..+.-.
T Consensus 87 ii~v~d~~~~~s-~~~~~--------------------------------------------~~~~~~~~~--------- 112 (187)
T 1zj6_A 87 VIVVVDSTDRER-ISVTR--------------------------------------------EELYKMLAH--------- 112 (187)
T ss_dssp EEEEEETTCTTT-HHHHH--------------------------------------------HHHHHHHTS---------
T ss_pred EEEEEeCCCHHH-HHHHH--------------------------------------------HHHHHHHhc---------
Confidence 999999987631 11111 111111000
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcCC---HHHHHHHhc---C----CCeeeecccccccHHHHHHHHHHHcCC
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQIT---LEELEILDK---L----PHYCPVSAHLEWNLDGLLEKIWEYLNL 292 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~---~~~l~~l~~---~----~~~v~vSa~~~~gl~~L~~~i~~~l~~ 292 (381)
......|+++|+||+|+.. .+++..... . .+++.+||+++.|++++++.+.+.+..
T Consensus 113 -----------~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 113 -----------EDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp -----------GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred -----------hhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 0011369999999999975 333322111 1 257899999999999999999987753
No 40
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.69 E-value=1.2e-17 Score=168.07 Aligned_cols=83 Identities=25% Similarity=0.295 Sum_probs=66.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc----------------cc------cccccceeeeecEEEEEcCEEeeecCccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS----------------EV------ASYEFTTLTCIPGVITYRGAKIQLLDLPGII 123 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~----------------~~------~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~ 123 (381)
.+|+|+|++|||||||+|+|++... .. ...+++|++.....+.+++..+.++||||+.
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 6999999999999999999962211 01 1246889988889999999999999999986
Q ss_pred ccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 124 EGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
+.. ......++.+|++++|+|+.++
T Consensus 94 df~-------~~~~~~l~~aD~allVvDa~~g 118 (528)
T 3tr5_A 94 DFT-------EDTYRTLTAVDSALMVIDAAKG 118 (528)
T ss_dssp TCC-------HHHHHGGGGCSEEEEEEETTTC
T ss_pred hHH-------HHHHHHHHhCCEEEEEEeCCCC
Confidence 643 3455567899999999999876
No 41
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=5e-18 Score=168.72 Aligned_cols=156 Identities=21% Similarity=0.264 Sum_probs=97.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCc-chhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG-RGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~-~~~~~~~~~~~ 142 (381)
..+|+|+|.||||||||+|+|+|... .+.+.|++|++...+.+.+.+..+.++||||+......... ...+....++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 47999999999999999999999764 47889999999999999989999999999998632211111 12234445688
Q ss_pred cchhHHHHhcCCChHH-HHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccc
Q 016864 143 CNCILIVLDAIKPITH-KRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADIT 221 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~-~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 221 (381)
+|++++|+|+..+... ..++...
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~-------------------------------------------------------- 126 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKI-------------------------------------------------------- 126 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHH--------------------------------------------------------
T ss_pred CCEEEEEEeCCCCCChHHHHHHHH--------------------------------------------------------
Confidence 9999999998765321 1111111
Q ss_pred cccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH-HHHH--hcCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 222 LRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-LEIL--DKLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 222 ~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-l~~l--~~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+.. ..+|+++|+||+|+..... .... ..+...+++||.++.|+++|++.+.+.+.
T Consensus 127 -------------l~~--~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 127 -------------LYR--TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp -------------HTT--CCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred -------------HHH--cCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhcc
Confidence 111 1279999999999874322 1111 12456789999999999999999987664
No 42
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.69 E-value=1e-17 Score=164.03 Aligned_cols=156 Identities=22% Similarity=0.238 Sum_probs=107.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCE-EeeecCcccccccccCCCcchhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGA-KIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~-~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..+|+++|++|+|||||+|+|++... .++++++||+++....+.+.+. ++.++||||+.+....+..........+..
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~ 113 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYR 113 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhc
Confidence 37999999999999999999999875 5688999999999999999875 999999999987554433344455566789
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|+..... ...+..+ +..
T Consensus 114 aD~vllVvD~~~~~~-~~~~l~~--------------------------------------------l~~---------- 138 (423)
T 3qq5_A 114 ADCGILVTDSAPTPY-EDDVVNL--------------------------------------------FKE---------- 138 (423)
T ss_dssp CSEEEEECSSSCCHH-HHHHHHH--------------------------------------------HHH----------
T ss_pred CCEEEEEEeCCChHH-HHHHHHH--------------------------------------------HHh----------
Confidence 999999999832222 1111111 111
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCHH---HHHHHhc--CCCeeeecccccccHHHHHHHHHHHcCC
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE---ELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLNL 292 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~---~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~~ 292 (381)
. .+|+|+|+||+|+.... ..+.+.+ ..+++.+||+++.|++++++.+.+.+..
T Consensus 139 ---------------~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 139 ---------------M--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp ---------------T--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred ---------------c--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 0 26999999999998543 2333332 2468999999999999999999998854
No 43
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.69 E-value=1.1e-16 Score=138.79 Aligned_cols=151 Identities=16% Similarity=0.114 Sum_probs=102.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
..+|+++|++|||||||+|++++.. ...+. .|+......+.+++..+.++||||..... ......++.+|
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d 87 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHRGFKLNIWDVGGQKSLR-------SYWRNYFESTD 87 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEETTEEEEEEEECCSHHHH-------TTGGGGCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCC
Confidence 3899999999999999999999876 22222 24445566778889999999999975432 12233468899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|++++..- +.+.. ++..+
T Consensus 88 ~ii~v~d~~~~~s~-~~~~~--------------------------------------------~~~~~----------- 111 (186)
T 1ksh_A 88 GLIWVVDSADRQRM-QDCQR--------------------------------------------ELQSL----------- 111 (186)
T ss_dssp EEEEEEETTCGGGH-HHHHH--------------------------------------------HHHHH-----------
T ss_pred EEEEEEECcCHHHH-HHHHH--------------------------------------------HHHHH-----------
Confidence 99999999876421 11111 11110
Q ss_pred CCChhHHHHHHhc-ccccccEEEEEecCCcCCH---HHHHHHhc-------CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 225 DATADDLIDVIEG-SRIYMPCIYVINKIDQITL---EELEILDK-------LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 225 e~t~~~~~~~l~~-~~~~~p~i~v~NK~Dl~~~---~~l~~l~~-------~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+.. .....|+++|+||+|+... +++..... ..+++.+||+++.|++++++.+.+.+.
T Consensus 112 ----------~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 112 ----------LVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp ----------HTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------HhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 000 0112699999999999753 23322111 125789999999999999999988764
No 44
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.69 E-value=4.2e-17 Score=142.54 Aligned_cols=155 Identities=18% Similarity=0.201 Sum_probs=94.5
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhccc--ccccccccceeeeecEEEEEcCEEeeecCcccccccccCC--C----cchhh
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTF--SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG--K----GRGRQ 135 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~--~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~--~----~~~~~ 135 (381)
...+|+++|.+|||||||+|+|++.. ...++.+++|.+..... + +..+.++||||+....... . .....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 44899999999999999999999875 34577788888765443 3 3479999999975432110 0 01122
Q ss_pred hhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcc
Q 016864 136 VISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRI 215 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~ 215 (381)
.+.....+|++++|+|+.++...... .+..++..
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~-------------------------------------------~~~~~~~~--- 132 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDV-------------------------------------------QMYEFLKY--- 132 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH-------------------------------------------HHHHHHHH---
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHH-------------------------------------------HHHHHHHH---
Confidence 22233455899999998775321110 00011111
Q ss_pred cCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----HH----Hhc--CCCeeeecccccccHHHHHHH
Q 016864 216 HNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----EI----LDK--LPHYCPVSAHLEWNLDGLLEK 285 (381)
Q Consensus 216 ~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~----l~~--~~~~v~vSa~~~~gl~~L~~~ 285 (381)
...|+++|+||+|+....++ +. +.. ..+++.+||+++.|++++++.
T Consensus 133 ------------------------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 188 (195)
T 1svi_A 133 ------------------------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGA 188 (195)
T ss_dssp ------------------------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHH
T ss_pred ------------------------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHH
Confidence 12699999999999865432 12 221 346889999999999999999
Q ss_pred HHHHcC
Q 016864 286 IWEYLN 291 (381)
Q Consensus 286 i~~~l~ 291 (381)
+.+.+.
T Consensus 189 l~~~l~ 194 (195)
T 1svi_A 189 IKKMIN 194 (195)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 987653
No 45
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.68 E-value=6.2e-17 Score=140.13 Aligned_cols=147 Identities=15% Similarity=0.089 Sum_probs=98.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|.+|||||||+|+|++... .....|.......+.+++..+.++||||..... ......++.+|+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~ 91 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMNEV---VHTSPTIGSNVEEIVINNTRFLMWDIGGQESLR-------SSWNTYYTNTEF 91 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTTSC---EEEECCSSSSCEEEEETTEEEEEEEESSSGGGT-------CGGGGGGTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC---CccCCcCceeeEEEEECCEEEEEEECCCCHhHH-------HHHHHHhccCCE
Confidence 7999999999999999999998654 112223334456778889999999999975432 122334688999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|+.++..- +.+. ..+..+
T Consensus 92 ii~v~D~~~~~s~-~~~~--------------------------------------------~~~~~~------------ 114 (181)
T 2h17_A 92 VIVVVDSTDRERI-SVTR--------------------------------------------EELYKM------------ 114 (181)
T ss_dssp EEEEEETTCTTTH-HHHH--------------------------------------------HHHHHH------------
T ss_pred EEEEEECCCHHHH-HHHH--------------------------------------------HHHHHH------------
Confidence 9999999876321 1111 111110
Q ss_pred CChhHHHHHHhc-ccccccEEEEEecCCcCC---HHHHHHHh---cC----CCeeeecccccccHHHHHHHHHH
Q 016864 226 ATADDLIDVIEG-SRIYMPCIYVINKIDQIT---LEELEILD---KL----PHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 226 ~t~~~~~~~l~~-~~~~~p~i~v~NK~Dl~~---~~~l~~l~---~~----~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
+.. .....|+++|+||+|+.. .+++.... .. ..++.+||+++.|++++++.+.+
T Consensus 115 ---------~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 115 ---------LAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp ---------HTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred ---------HhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence 000 011369999999999975 33333221 11 15789999999999999998865
No 46
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=7.2e-17 Score=139.44 Aligned_cols=150 Identities=16% Similarity=0.074 Sum_probs=97.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|++|||||||+|+|++.... ....|.......+.+++..+.++||||..... ......++.+|+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~ 88 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQIGEVV---TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIR-------PYWRCYYADTAA 88 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCSEEE---EECSSTTCCEEEEEETTEEEEEEEEC----CC-------TTGGGTTTTEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCcC---ccCCcCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhccCCE
Confidence 79999999999999999999865431 11223334556778889999999999986532 122334688999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|+.++.. .+.+. ..+..+.-..
T Consensus 89 ii~v~d~~~~~s-~~~~~--------------------------------------------~~~~~~~~~~-------- 115 (183)
T 1moz_A 89 VIFVVDSTDKDR-MSTAS--------------------------------------------KELHLMLQEE-------- 115 (183)
T ss_dssp EEEEEETTCTTT-HHHHH--------------------------------------------HHHHHHTTSS--------
T ss_pred EEEEEECCCHHH-HHHHH--------------------------------------------HHHHHHHcCh--------
Confidence 999999987632 11111 1111110000
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcCCH---HHHHHHhcC-------CCeeeecccccccHHHHHHHHHHHc
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQITL---EELEILDKL-------PHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~~l~~~-------~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+++|+||+|+... +++...... .+++.+||+++.|++++++.+.+.+
T Consensus 116 ------------~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 116 ------------ELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp ------------TTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred ------------hhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 0113699999999998743 334322111 1478999999999999999988754
No 47
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.68 E-value=1.3e-16 Score=136.00 Aligned_cols=149 Identities=20% Similarity=0.168 Sum_probs=101.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|.+|||||||+|+|++.... .. ..|.+.....+.+++..+.++||||..... ......++.+|+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d~ 77 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGEVV-TT--IPTIGFNVETVTYKNLKFQVWDLGGLTSIR-------PYWRCYYSNTDA 77 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-CC--CCCSSEEEEEEEETTEEEEEEEECCCGGGG-------GGGGGGCTTCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCcCccceEEEEECCEEEEEEECCCChhhh-------HHHHHHhccCCE
Confidence 79999999999999999999875432 11 224455666788889999999999975432 122335689999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|+.++..- ..+.. .+..+
T Consensus 78 ii~v~d~~~~~s~-~~~~~--------------------------------------------~~~~~------------ 100 (171)
T 1upt_A 78 VIYVVDSCDRDRI-GISKS--------------------------------------------ELVAM------------ 100 (171)
T ss_dssp EEEEEETTCCTTH-HHHHH--------------------------------------------HHHHH------------
T ss_pred EEEEEECCCHHHH-HHHHH--------------------------------------------HHHHH------------
Confidence 9999999876321 11111 11110
Q ss_pred CChhHHHHHHhc-ccccccEEEEEecCCcCCH---HHHHH-Hh-c-----CCCeeeecccccccHHHHHHHHHHHc
Q 016864 226 ATADDLIDVIEG-SRIYMPCIYVINKIDQITL---EELEI-LD-K-----LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 226 ~t~~~~~~~l~~-~~~~~p~i~v~NK~Dl~~~---~~l~~-l~-~-----~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
+.. .....|+++|+||+|+... +++.. +. . ..+++.+||+++.|++++++.+.+.+
T Consensus 101 ---------~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 101 ---------LEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp ---------HTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------HhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 000 0013699999999999753 33321 11 1 11578999999999999999998765
No 48
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.68 E-value=7.3e-17 Score=140.71 Aligned_cols=155 Identities=17% Similarity=0.201 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|.+|||||||+|+|++....... ...|++.....+.+++..+.++||||..... ......++.+|+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~ 93 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSNAQSQN-ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR-------NLWEHYYKEGQA 93 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGGGCCSS-CCCCSSEEEEEEECSSCEEEEEEECCSTTTG-------GGGGGGGGGCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC-cCCccceeEEEEEECCEEEEEEECCCCHHHH-------HHHHHHHhcCCE
Confidence 79999999999999999999987633333 2356666777888889999999999965432 122234688999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|+.++..- +.+...+ ..++.....
T Consensus 94 ii~v~d~~~~~s~-~~~~~~~----------------------------------------~~~~~~~~~---------- 122 (190)
T 2h57_A 94 IIFVIDSSDRLRM-VVAKEEL----------------------------------------DTLLNHPDI---------- 122 (190)
T ss_dssp EEEEEETTCHHHH-HHHHHHH----------------------------------------HHHHHSTTT----------
T ss_pred EEEEEECCCHHHH-HHHHHHH----------------------------------------HHHHhChhh----------
Confidence 9999999875321 1111111 011110000
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcCCH---HHHHHHh---c----CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQITL---EELEILD---K----LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~~l~---~----~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.....|+++|+||+|+... +++.... . ..+++.+||+++.|++++++.+.+.+.
T Consensus 123 ------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 123 ------------KHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp ------------TTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ------------ccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 0013699999999999743 3333221 1 125789999999999999999988764
No 49
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.68 E-value=6e-17 Score=141.14 Aligned_cols=154 Identities=21% Similarity=0.212 Sum_probs=102.4
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhccc-ccccccccceeeeecEEEEEcCEEeeecCcccccccccCC------Ccchhhh
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTF-SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG------KGRGRQV 136 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~-~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~------~~~~~~~ 136 (381)
...+|+++|.+|||||||+|+|++.. ...++.+++|.+..... .+.++.++||||+....... .......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 34799999999999999999999876 45577788887765432 24578899999964321110 0011223
Q ss_pred hcccCCcchhHHHHhcCCChHH-HHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcc
Q 016864 137 ISTARTCNCILIVLDAIKPITH-KRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRI 215 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~-~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~ 215 (381)
+.....+|++++|+|+..+... ...+. ..+...
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~--------------------------------------------~~~~~~-- 132 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMMV--------------------------------------------EWMKSL-- 132 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHH--------------------------------------------HHHHHT--
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHHH--------------------------------------------HHHHHc--
Confidence 3334566999999998765221 11111 111110
Q ss_pred cCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH-------HHHh-c--CCCeeeecccccccHHHHHHH
Q 016864 216 HNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL-------EILD-K--LPHYCPVSAHLEWNLDGLLEK 285 (381)
Q Consensus 216 ~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l-------~~l~-~--~~~~v~vSa~~~~gl~~L~~~ 285 (381)
..|+++|+||+|+...++. .... . ..+++.+||+++.|++++++.
T Consensus 133 -------------------------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 187 (195)
T 3pqc_A 133 -------------------------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDL 187 (195)
T ss_dssp -------------------------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHH
T ss_pred -------------------------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHH
Confidence 2699999999999754322 1222 2 247899999999999999999
Q ss_pred HHHHcC
Q 016864 286 IWEYLN 291 (381)
Q Consensus 286 i~~~l~ 291 (381)
+.+.+.
T Consensus 188 l~~~l~ 193 (195)
T 3pqc_A 188 ISTLLK 193 (195)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988764
No 50
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.68 E-value=1.4e-16 Score=139.52 Aligned_cols=161 Identities=16% Similarity=0.164 Sum_probs=101.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
..+|+++|.+|||||||+|+|++......++.. |.......+...+..+.++||||..... ......++.+|
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 88 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGRVAFTVFDMGGAKKFR-------GLWETYYDNID 88 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETTEEEEEEEECCSGGGG-------GGGGGGCTTCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCCEEEEEEECCCCHhHH-------HHHHHHHhcCC
Confidence 379999999999999999999987644312222 3344555667788999999999975532 22223468999
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|+.++.. .+.+..++. .++....+..
T Consensus 89 ~ii~v~D~~~~~s-~~~~~~~~~----------------------------------------~~~~~~~~~~------- 120 (199)
T 4bas_A 89 AVIFVVDSSDHLR-LCVVKSEIQ----------------------------------------AMLKHEDIRR------- 120 (199)
T ss_dssp EEEEEEETTCGGG-HHHHHHHHH----------------------------------------HHHTSHHHHS-------
T ss_pred EEEEEEECCcHHH-HHHHHHHHH----------------------------------------HHHhChhhhh-------
Confidence 9999999987632 111111111 0100000000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH---HHHH-HHh-------cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL---EELE-ILD-------KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~-~l~-------~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.. ......|+|+|+||+|+... +++. .+. ...+++.+||+++.|++++++.+.+.+.
T Consensus 121 ---------~~-~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 121 ---------EL-PGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp ---------BC-TTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred ---------cc-cccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 00 00013699999999999854 3332 111 1225789999999999999999987653
No 51
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.68 E-value=1.7e-16 Score=139.82 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=97.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|++|||||||+++|++.... .+ ..|..+..+.+.+++..+.++||||...... .....++.+|+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~d~ 95 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QH-VPTLHPTSEELTIAGMTFTTFDLGGHIQARR-------VWKNYLPAING 95 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CC-------GGGGGGGGCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-CCCCCceeEEEEECCEEEEEEECCCcHhhHH-------HHHHHHhcCCE
Confidence 68999999999999999999876532 22 2355666788999999999999999754321 11224578999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|+.++.. .+.+..+ +..+
T Consensus 96 ~i~v~D~~~~~s-~~~~~~~--------------------------------------------~~~~------------ 118 (198)
T 1f6b_A 96 IVFLVDCADHER-LLESKEE--------------------------------------------LDSL------------ 118 (198)
T ss_dssp EEEEEETTCGGG-HHHHHHH--------------------------------------------HHHH------------
T ss_pred EEEEEECCCHHH-HHHHHHH--------------------------------------------HHHH------------
Confidence 999999987632 1111111 1110
Q ss_pred CChhHHHHHHhc-ccccccEEEEEecCCcCC---HHHHHHHhc-------------------CCCeeeecccccccHHHH
Q 016864 226 ATADDLIDVIEG-SRIYMPCIYVINKIDQIT---LEELEILDK-------------------LPHYCPVSAHLEWNLDGL 282 (381)
Q Consensus 226 ~t~~~~~~~l~~-~~~~~p~i~v~NK~Dl~~---~~~l~~l~~-------------------~~~~v~vSa~~~~gl~~L 282 (381)
+.. ....+|+++|+||+|+.. .+++..... ..+++.+||+++.|++++
T Consensus 119 ---------~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 189 (198)
T 1f6b_A 119 ---------MTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 189 (198)
T ss_dssp ---------HTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHH
T ss_pred ---------HhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHH
Confidence 000 011369999999999973 344433211 124788999999999999
Q ss_pred HHHHHHHc
Q 016864 283 LEKIWEYL 290 (381)
Q Consensus 283 ~~~i~~~l 290 (381)
++.+.+.+
T Consensus 190 ~~~l~~~l 197 (198)
T 1f6b_A 190 FRWMAQYI 197 (198)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhc
Confidence 99987643
No 52
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.68 E-value=4.1e-16 Score=133.78 Aligned_cols=156 Identities=18% Similarity=0.157 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++........|.++.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 80 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR-------SLRTPFYRGS 80 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH-------HHHGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhHHHHHhcC
Confidence 6999999999999999999998765545556666666677778877 478999999964432 2223356889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++... +.+..++. .+.......
T Consensus 81 ~~~i~v~d~~~~~s~-~~~~~~~~----------------------------------------~~~~~~~~~------- 112 (177)
T 1wms_A 81 DCCLLTFSVDDSQSF-QNLSNWKK----------------------------------------EFIYYADVK------- 112 (177)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHH----------------------------------------HHHHHHTCS-------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHH----------------------------------------HHHHHcccc-------
Confidence 999999999875321 11111110 000000000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC----HHHHHHHh---cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT----LEELEILD---KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~----~~~l~~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+++|+||+|+.. .++...+. ...+++.+||+++.|++++++.+.+.+
T Consensus 113 --------------~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 113 --------------EPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp --------------CTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------ccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 011369999999999862 23343332 235789999999999999999988754
No 53
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.68 E-value=2.5e-16 Score=139.11 Aligned_cols=152 Identities=18% Similarity=0.103 Sum_probs=105.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++........|.++.+.....+.+++. .+.++||||...... .....++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 81 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT-------ITSSYYRGS 81 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC-------CCGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH-------HHHHhccCC
Confidence 69999999999999999999987655555667777777777888764 789999999654321 122346889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+.. ++..+.
T Consensus 82 d~vilv~d~~~~~s-~~~~~~--------------------------------------------~~~~i~--------- 107 (206)
T 2bcg_Y 82 HGIIIVYDVTDQES-FNGVKM--------------------------------------------WLQEID--------- 107 (206)
T ss_dssp SEEEEEEETTCHHH-HHHHHH--------------------------------------------HHHHHH---------
T ss_pred CEEEEEEECcCHHH-HHHHHH--------------------------------------------HHHHHH---------
Confidence 99999999987532 111111 111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. .....|+++|+||+|+... ++...+. ...+++.+||+++.|++++++.+.+.+
T Consensus 108 ---------~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 108 ---------RY---ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp ---------HH---SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------Hh---cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0012699999999999742 2333332 224689999999999999999887755
No 54
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.68 E-value=1.6e-16 Score=137.66 Aligned_cols=152 Identities=18% Similarity=0.101 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++........+.++.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 83 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR-------SVTRSYYRGA 83 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHHhcC
Confidence 6999999999999999999998766555666777777777788877 578999999965432 2233456889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++... +.+. .++..+.
T Consensus 84 d~~i~v~d~~~~~s~-~~~~--------------------------------------------~~~~~~~--------- 109 (186)
T 2bme_A 84 AGALLVYDITSRETY-NALT--------------------------------------------NWLTDAR--------- 109 (186)
T ss_dssp SEEEEEEETTCHHHH-HTHH--------------------------------------------HHHHHHH---------
T ss_pred CEEEEEEECcCHHHH-HHHH--------------------------------------------HHHHHHH---------
Confidence 999999999875321 1111 1111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. .....|+++|+||+|+... ++...+. ...+++.+||+++.|++++++.+.+.+
T Consensus 110 ----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 110 ----------ML--ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp ----------HH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 00 0112699999999998632 2233222 124578999999999999999887654
No 55
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.68 E-value=2.8e-16 Score=139.20 Aligned_cols=153 Identities=20% Similarity=0.132 Sum_probs=106.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..+|+++|++|||||||+|+|++........|.++.+.....+.+++ ..+.++||||...... .....++.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 92 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT-------ITTAYYRG 92 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC-------CCHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHhcc
Confidence 37999999999999999999998766556667777777778888887 5789999999754321 12234588
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|+.++.. .+.+. .++..+.
T Consensus 93 ~d~ii~v~d~~~~~s-~~~~~--------------------------------------------~~~~~i~-------- 119 (213)
T 3cph_A 93 AMGIILVYDVTDERT-FTNIK--------------------------------------------QWFKTVN-------- 119 (213)
T ss_dssp CSEEEEEEETTCHHH-HHTHH--------------------------------------------HHHHHHH--------
T ss_pred CCEEEEEEECCCHHH-HHHHH--------------------------------------------HHHHHHH--------
Confidence 999999999987532 11111 1111100
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCC----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQIT----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. .....|+++|+||+|+.. .++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 120 ----------~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 120 ----------EH---ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp ----------HH---TTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ----------Hh---cCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 001269999999999852 233333321 23689999999999999999887755
No 56
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.68 E-value=1.2e-16 Score=135.37 Aligned_cols=150 Identities=17% Similarity=0.061 Sum_probs=99.7
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchh
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCI 146 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 146 (381)
+|+++|.+|||||||+|++++.... ...| |++.....+.+++..+.++||||..... ......++.+|++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~ 71 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 71 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSSCEEEEEECCCCGGGH-------HHHHHHTTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECCEEEEEEEcCCChhhH-------HHHHHHhccCCEE
Confidence 7999999999999999999876532 2223 5555566777788999999999975431 1222346899999
Q ss_pred HHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCC
Q 016864 147 LIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDA 226 (381)
Q Consensus 147 l~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~ 226 (381)
++|+|+.++.. .+.+..++. .++...
T Consensus 72 i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~------------- 97 (164)
T 1r8s_A 72 IFVVDSNDRER-VNEAREELM----------------------------------------RMLAED------------- 97 (164)
T ss_dssp EEEEETTCGGG-HHHHHHHHH----------------------------------------HHHTCG-------------
T ss_pred EEEEECCCHHH-HHHHHHHHH----------------------------------------HHHhch-------------
Confidence 99999987632 111111110 010000
Q ss_pred ChhHHHHHHhcccccccEEEEEecCCcCCH---HHHHHHhc-------CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 227 TADDLIDVIEGSRIYMPCIYVINKIDQITL---EELEILDK-------LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 227 t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~~l~~-------~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.....|+++|+||+|+... +++..... ..+++.+||+++.|++++++.+.+.+.
T Consensus 98 -----------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 98 -----------ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp -----------GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred -----------hhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 0112699999999999753 33322111 114789999999999999999988664
No 57
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.67 E-value=1e-16 Score=147.23 Aligned_cols=90 Identities=20% Similarity=0.182 Sum_probs=69.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccc-ccccc-ceeeeecEEEEEcCEEeeecCcccccccccCCCcc----hhhhhc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEV-ASYEF-TTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGR----GRQVIS 138 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~-~~~~~-tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~----~~~~~~ 138 (381)
..+|+|+|++|||||||+|+|+|..... +..|. +|+++..+.+.+++..+.++||||+.+........ ......
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 101 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLL 101 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHh
Confidence 4799999999999999999999987444 33454 78999999999999999999999997654221110 112223
Q ss_pred ccCCcchhHHHHhcCC
Q 016864 139 TARTCNCILIVLDAIK 154 (381)
Q Consensus 139 ~~~~~d~il~vvd~~~ 154 (381)
.++.+|++++|+|+..
T Consensus 102 ~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HTTCCSEEEEEEETTC
T ss_pred cCCCCcEEEEEEeCCC
Confidence 5688999999999876
No 58
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.67 E-value=2.5e-16 Score=133.92 Aligned_cols=152 Identities=19% Similarity=0.125 Sum_probs=99.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++........|.++.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~ 76 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT-------ITTAYYRGA 76 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC-------CCHHHHTTE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh-------hHHHHhccC
Confidence 6899999999999999999998765555566667677667777765 4788999999654321 122345789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+. .++..+.
T Consensus 77 d~~i~v~d~~~~~s-~~~~~--------------------------------------------~~~~~i~--------- 102 (170)
T 1g16_A 77 MGIILVYDITDERT-FTNIK--------------------------------------------QWFKTVN--------- 102 (170)
T ss_dssp EEEEEEEETTCHHH-HHTHH--------------------------------------------HHHHHHH---------
T ss_pred CEEEEEEECCCHHH-HHHHH--------------------------------------------HHHHHHH---------
Confidence 99999999987532 11111 1111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC----HHHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT----LEELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~----~~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. .....|+++|+||+|+.. .++.+.+. ...+++.+||+++.|++++++.+.+.+
T Consensus 103 ---------~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 103 ---------EH---ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp ---------HH---SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------Hh---cCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00 001269999999999853 23333332 124689999999999999999988765
No 59
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.67 E-value=2.8e-16 Score=138.52 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+.++.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 81 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS-------LGVAFYRGA 81 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC-------SCCGGGTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-------hHHHHHhCC
Confidence 7999999999999999999998765544455666677777777665 5789999999654321 122345789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++... +.+..++. .++.....
T Consensus 82 d~~i~v~d~~~~~s~-~~~~~~~~----------------------------------------~~~~~~~~-------- 112 (207)
T 1vg8_A 82 DCCVLVFDVTAPNTF-KTLDSWRD----------------------------------------EFLIQASP-------- 112 (207)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHH----------------------------------------HHHHHHCC--------
T ss_pred cEEEEEEECCCHHHH-HHHHHHHH----------------------------------------HHHHhccc--------
Confidence 999999999875321 11111110 01100000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH----HHHHHHh---cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL----EELEILD---KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~----~~l~~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
......|+++|+||+|+... ++...+. ...+++.+||+++.|++++++.+.+.+
T Consensus 113 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 113 -------------RDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp -------------SSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------ccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00113699999999999732 2333332 234689999999999999999887755
No 60
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.67 E-value=3.1e-16 Score=137.88 Aligned_cols=84 Identities=24% Similarity=0.252 Sum_probs=60.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..+|+++|.+|||||||++++++.. ....+++||.+.....+.+++. .+.++||||....... ....+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~ 91 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL-------RPLCYTN 91 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS-------GGGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH-------hHhhcCC
Confidence 3799999999999999999999865 4466778887777777888875 5669999997543211 1124578
Q ss_pred cchhHHHHhcCCCh
Q 016864 143 CNCILIVLDAIKPI 156 (381)
Q Consensus 143 ~d~il~vvd~~~~~ 156 (381)
+|++++|+|++++.
T Consensus 92 ~~~~i~v~d~~~~~ 105 (201)
T 2q3h_A 92 TDIFLLCFSVVSPS 105 (201)
T ss_dssp CSEEEEEEETTCHH
T ss_pred CcEEEEEEECCCHH
Confidence 99999999998753
No 61
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.67 E-value=5.9e-16 Score=135.37 Aligned_cols=152 Identities=20% Similarity=0.175 Sum_probs=102.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEE--eeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAK--IQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~--i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++... ...+..|+.+.....+.+++.. +.++||||..... ......++.+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 95 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD-------RLRPLSYADS 95 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-------TTGGGGCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-------HHhHhhccCC
Confidence 7999999999999999999998653 3455566665555667777654 5899999964432 1222356889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++......... ++..
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~--------------------------------------------~~~~----------- 120 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTK--------------------------------------------WEPE----------- 120 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHT--------------------------------------------HHHH-----------
T ss_pred cEEEEEEECCCHHHHHHHHHH--------------------------------------------HHHH-----------
Confidence 999999999876321110010 1100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-------HHHHHHHh---cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-------LEELEILD---KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-------~~~l~~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+.......|+++|+||+|+.. .++...+. ....++.+||+++.|++++++.+.+.+.
T Consensus 121 -----------~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 121 -----------IKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp -----------HHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----------HHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 000011269999999999863 22333322 3344899999999999999999988653
No 62
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.67 E-value=3.4e-16 Score=134.29 Aligned_cols=153 Identities=18% Similarity=0.135 Sum_probs=105.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++........+.++.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 87 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDS 87 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGSHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHH-------HHHHHHhcCC
Confidence 6899999999999999999998765555567777788778888877 478999999964432 1222345789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+.. ++..+
T Consensus 88 d~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~i---------- 112 (179)
T 2y8e_A 88 TVAVVVYDITNTNS-FHQTSK--------------------------------------------WIDDV---------- 112 (179)
T ss_dssp SEEEEEEETTCHHH-HHTHHH--------------------------------------------HHHHH----------
T ss_pred CEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHH----------
Confidence 99999999987532 111111 11110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
... .....|+++|+||+|+... ++...+. ...+++.+||+++.|++++++.+.+.+.
T Consensus 113 --------~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 113 --------RTE---RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp --------HHH---HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred --------HHh---cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 000 0012699999999998632 2222221 2346899999999999999999988653
No 63
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.67 E-value=2.3e-16 Score=133.95 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=101.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++........|.++.+.....+.+++ ..+.++||||..+... .....++.+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 78 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA-------ITKAYYRGA 78 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC-------CCHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH-------HHHHHhcCC
Confidence 6899999999999999999998754433445555566667777765 4788999999654321 122245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++... +.+.. ++..+
T Consensus 79 d~~i~v~d~~~~~s~-~~~~~--------------------------------------------~~~~i---------- 103 (168)
T 1z2a_A 79 QACVLVFSTTDRESF-EAISS--------------------------------------------WREKV---------- 103 (168)
T ss_dssp CEEEEEEETTCHHHH-HTHHH--------------------------------------------HHHHH----------
T ss_pred CEEEEEEECcCHHHH-HHHHH--------------------------------------------HHHHH----------
Confidence 999999999875321 11111 11110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.... ...|+++|+||+|+.. .++.+.+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 104 --------~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 104 --------VAEV----GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp --------HHHH----CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred --------HHhC----CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 0000 1269999999999864 233333321 23689999999999999999987754
No 64
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.67 E-value=1.7e-16 Score=136.27 Aligned_cols=155 Identities=20% Similarity=0.100 Sum_probs=103.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC---EEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG---AKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g---~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.+|+++|.+|||||||+|+|++........|.++.+.....+.+++ ..+.++||||..... ......++.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 79 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG-------KMLDKYIYG 79 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC-------TTHHHHHTT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc-------chhhHHHhh
Confidence 6899999999999999999998754423334455677777888876 789999999964432 112224588
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|++++.. .+.+..++. .+....
T Consensus 80 ~d~~i~v~d~~~~~s-~~~~~~~~~-------------------------------------~i~~~~------------ 109 (178)
T 2hxs_A 80 AQGVLLVYDITNYQS-FENLEDWYT-------------------------------------VVKKVS------------ 109 (178)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHH-------------------------------------HHHHHH------------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHH-------------------------------------HHHHHh------------
Confidence 999999999987632 111111110 000000
Q ss_pred ccCCChhHHHHHHhccccccc-EEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 223 RYDATADDLIDVIEGSRIYMP-CIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p-~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
... ...| +++|+||+|+.. .++...+.. ..+++.+||+++.|++++++.+.+.+.
T Consensus 110 -------------~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 110 -------------EES-ETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp -------------HHH-TCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred -------------ccc-CCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 000 0135 789999999863 233333321 246799999999999999999988764
No 65
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=3.3e-16 Score=138.46 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 99 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR-------SITQSYYRSA 99 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHGGGSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHHHHhcC
Confidence 6999999999999999999998765545556666677777788877 478899999964321 2233456899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++.. .+.+.. ++..+.
T Consensus 100 d~~i~v~D~~~~~s-~~~~~~--------------------------------------------~~~~i~--------- 125 (201)
T 2ew1_A 100 NALILTYDITCEES-FRCLPE--------------------------------------------WLREIE--------- 125 (201)
T ss_dssp SEEEEEEETTCHHH-HHTHHH--------------------------------------------HHHHHH---------
T ss_pred CEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHHH---------
Confidence 99999999987532 111111 111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. . .....|+++|+||+|+.. .++.+.+. ...+++.+||+++.|++++++.+.+.+
T Consensus 126 ---------~-~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 126 ---------Q-Y--ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp ---------H-H--SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0 001269999999999863 22333322 234689999999999999999887655
No 66
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.67 E-value=4.2e-16 Score=134.07 Aligned_cols=157 Identities=18% Similarity=0.138 Sum_probs=98.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc---CEEeeecCcccccccccCCCcchhhhhcccC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR---GAKIQLLDLPGIIEGAKDGKGRGRQVISTAR 141 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~---g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 141 (381)
..+|+++|++|||||||+|+|++........|.++.+.....+.++ ...+.++||||..... ......++
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~ 80 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFYR 80 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCST
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHHhh
Confidence 3799999999999999999999876544444555566666667665 2578999999964422 12223568
Q ss_pred CcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccc
Q 016864 142 TCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADIT 221 (381)
Q Consensus 142 ~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 221 (381)
.+|++++|+|+.++.. .+.+..++. .+.......
T Consensus 81 ~~d~~i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~~~~~----- 114 (182)
T 1ky3_A 81 GADCCVLVYDVTNASS-FENIKSWRD----------------------------------------EFLVHANVN----- 114 (182)
T ss_dssp TCCEEEEEEETTCHHH-HHTHHHHHH----------------------------------------HHHHHHCCS-----
T ss_pred cCCEEEEEEECCChHH-HHHHHHHHH----------------------------------------HHHHHhccc-----
Confidence 8999999999987632 111111110 111100000
Q ss_pred cccCCChhHHHHHHhcccccccEEEEEecCCcCC------HHHHHHHh---cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 222 LRYDATADDLIDVIEGSRIYMPCIYVINKIDQIT------LEELEILD---KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 222 ~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~------~~~l~~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+++|+||+|+.. .++...+. ...+++.+||+++.|++++++.+.+.+
T Consensus 115 ----------------~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 115 ----------------SPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp ----------------CTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ----------------CcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 011369999999999852 23333333 235689999999999999999987654
No 67
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.67 E-value=8.5e-17 Score=145.98 Aligned_cols=92 Identities=21% Similarity=0.245 Sum_probs=66.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccc--cceeeeecEEEEEcCEEeeecCcccccccccCCCc----chhhhh
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYE--FTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG----RGRQVI 137 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~--~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~----~~~~~~ 137 (381)
...+|+|+|++|||||||+|+|+|.....+..+ ++|.++..+.+.+++..+.++||||+.+....+.. ......
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~ 107 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCIL 107 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence 347999999999999999999999887767766 88999999999999999999999999865432211 112222
Q ss_pred cccCCcchhHHHHhcCCC
Q 016864 138 STARTCNCILIVLDAIKP 155 (381)
Q Consensus 138 ~~~~~~d~il~vvd~~~~ 155 (381)
...+.+|++++|+|+...
T Consensus 108 ~~~~~~~~~l~v~d~~~~ 125 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRY 125 (239)
T ss_dssp HTTTCCSEEEEEEETTCC
T ss_pred hcCCCCcEEEEEeeCCCC
Confidence 244678999999998654
No 68
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.67 E-value=1.5e-16 Score=137.45 Aligned_cols=152 Identities=17% Similarity=0.110 Sum_probs=82.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........|.++.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 81 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGA 81 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh-------hHHHHHhcC
Confidence 6899999999999999999997655545566677777777788877 6789999999754321 122346889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++.. .+.+.. ++..+.
T Consensus 82 d~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~i~--------- 107 (183)
T 2fu5_C 82 MGIMLVYDITNEKS-FDNIRN--------------------------------------------WIRNIE--------- 107 (183)
T ss_dssp SEEEEEEETTCHHH-HHHHHH--------------------------------------------HHHHHH---------
T ss_pred CEEEEEEECcCHHH-HHHHHH--------------------------------------------HHHHHH---------
Confidence 99999999987532 111111 111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. .....|+++|+||+|+.. .++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 108 ---------~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 108 ---------EH---ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp ---------HH---SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred ---------Hh---cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 001269999999999863 233333321 23689999999999999999887654
No 69
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.67 E-value=4.3e-16 Score=135.00 Aligned_cols=153 Identities=22% Similarity=0.166 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEE--eeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAK--IQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~--i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++.. ....+++|+.+.....+.+++.. +.++||||...... .....++.+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 76 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRTG 76 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS-CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT-------THHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH-------HHHHHHhcC
Confidence 689999999999999999999765 34667788888777788888765 66799999654321 111234678
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++... +.+..++. .+..
T Consensus 77 ~~~i~v~d~~~~~s~-~~~~~~~~----------------------------------------~~~~------------ 103 (189)
T 4dsu_A 77 EGFLCVFAINNTKSF-EDIHHYRE----------------------------------------QIKR------------ 103 (189)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHH----------------------------------------HHHH------------
T ss_pred CEEEEEEECCCHHHH-HHHHHHHH----------------------------------------HHHH------------
Confidence 999999999875321 11111110 0000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
... ....|+++|+||+|+... +....+. ...+++.+||+++.|++++++.+.+.+.
T Consensus 104 ----------~~~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 104 ----------VKD--SEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp ----------HTT--CSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------hcC--CCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 000 112699999999998732 2333332 1246899999999999999999877653
No 70
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.66 E-value=5.6e-16 Score=133.64 Aligned_cols=153 Identities=22% Similarity=0.213 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++.. ....++.|+.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 78 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI-------FPQTYSIDI 78 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC-------CCGGGTTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH-------HHHHHHhcC
Confidence 699999999999999999999654 446667777776677778877 4668999999754321 112245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+..++. .++..
T Consensus 79 ~~~i~v~d~~~~~s-~~~~~~~~~----------------------------------------~~~~~----------- 106 (181)
T 3t5g_A 79 NGYILVYSVTSIKS-FEVIKVIHG----------------------------------------KLLDM----------- 106 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHH----------------------------------------HHHHH-----------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHH----------------------------------------HHHHh-----------
Confidence 99999999987532 111111110 11111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+. ....|+++|+||+|+.. .++...+.. ..+++.+||+++.|++++++.+.+.+.
T Consensus 107 -----------~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 168 (181)
T 3t5g_A 107 -----------VG--KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 168 (181)
T ss_dssp -----------C------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred -----------cC--CCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 00 11269999999999863 233333322 235789999999999999999988664
No 71
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.66 E-value=4.4e-16 Score=136.32 Aligned_cols=151 Identities=21% Similarity=0.190 Sum_probs=98.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC---------------------------------
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--------------------------------- 111 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--------------------------------- 111 (381)
..+|+++|++|||||||+|+|++........|.++.+.....+.+++
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 37999999999999999999998764433333333444444455444
Q ss_pred ------EEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceee
Q 016864 112 ------AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKK 185 (381)
Q Consensus 112 ------~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~ 185 (381)
..+.++||||..... ......++.+|++++|+|+.++... +.+.
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~s~-~~~~---------------------- 136 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYA-------SIVPLYYRGATCAIVVFDISNSNTL-DRAK---------------------- 136 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCT-------TTHHHHHTTCSEEEEEEETTCHHHH-HHHH----------------------
T ss_pred cCccceeEEEEEECCCcHHHH-------HHHHHHhcCCCEEEEEEECCCHHHH-HHHH----------------------
Confidence 688999999965432 1222345889999999999876321 1111
Q ss_pred ccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcC----CHHHHHH
Q 016864 186 DKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQI----TLEELEI 261 (381)
Q Consensus 186 ~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~----~~~~l~~ 261 (381)
.++..+ .... ..|+++|+||+|+. ..+++..
T Consensus 137 ----------------------~~~~~i----------------------~~~~-~~piilv~NK~D~~~~~~~~~~~~~ 171 (208)
T 3clv_A 137 ----------------------TWVNQL----------------------KISS-NYIIILVANKIDKNKFQVDILEVQK 171 (208)
T ss_dssp ----------------------HHHHHH----------------------HHHS-CCEEEEEEECTTCC-CCSCHHHHHH
T ss_pred ----------------------HHHHHH----------------------HhhC-CCcEEEEEECCCcccccCCHHHHHH
Confidence 111111 0000 15999999999943 1233333
Q ss_pred Hhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 262 LDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 262 l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
+.. ..+++++||+++.|++++++.+.+.+
T Consensus 172 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 172 YAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 321 23688999999999999999887654
No 72
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=137.28 Aligned_cols=152 Identities=22% Similarity=0.248 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 99 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN-------SITSAYYRSA 99 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH-------HHHHHHhcCC
Confidence 6899999999999999999998765444556666677777778876 478999999965432 1223345789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++... +.+..++ ..+..+
T Consensus 100 d~iilV~D~~~~~s~-~~~~~~~-----------------------------------------~~i~~~---------- 127 (192)
T 2il1_A 100 KGIILVYDITKKETF-DDLPKWM-----------------------------------------KMIDKY---------- 127 (192)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHH-----------------------------------------HHHHHH----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHH-----------------------------------------HHHHHh----------
Confidence 999999999875321 1111110 111111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc---CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK---LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~---~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+++|+||+|+... ++.+.+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 128 --------------~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 128 --------------ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp --------------SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0112699999999998632 33333332 34578999999999999999987654
No 73
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=4.4e-16 Score=132.26 Aligned_cols=152 Identities=22% Similarity=0.177 Sum_probs=101.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++........|.++.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 76 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-------SLAPXYYRNA 76 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh-------hhhhhhhccC
Confidence 5899999999999999999998764434445555555566667765 478999999965432 1222345889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++... +.+.. ++..+.
T Consensus 77 d~~i~v~d~~~~~s~-~~~~~--------------------------------------------~~~~~~--------- 102 (170)
T 1ek0_A 77 QAALVVYDVTKPQSF-IKARH--------------------------------------------WVKELH--------- 102 (170)
T ss_dssp SEEEEEEETTCHHHH-HHHHH--------------------------------------------HHHHHH---------
T ss_pred cEEEEEEecCChHHH-HHHHH--------------------------------------------HHHHHH---------
Confidence 999999999876321 11111 111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH--------HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL--------EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~--------~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. .....|+++|+||+|+... ++.+.+. ...+++.+||+++.|++++++.+.+.+
T Consensus 103 ---------~~---~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 103 ---------EQ---ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp ---------HH---SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred ---------Hh---cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0012699999999998632 2222222 124689999999999999999988754
No 74
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.66 E-value=1.1e-15 Score=130.04 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=98.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc--cccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV--ASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTAR 141 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~--~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 141 (381)
.+|+++|++|||||||+|+|++..... .+.++++. ....+.+++ ..+.++||||..... ......++
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~ 77 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF--MTKTVQYQNELHKFLIWDTAGLERFR-------ALAPMYYR 77 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEETTEEEEEEEEEECCSGGGG-------GGTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEE--EEEEEEECCeEEEEEEEcCCCchhhh-------cccHhhCc
Confidence 699999999999999999999876432 22233333 333445554 678899999974432 12223458
Q ss_pred CcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccc
Q 016864 142 TCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADIT 221 (381)
Q Consensus 142 ~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 221 (381)
.+|++++|+|+.++... +.+..++ ..+...
T Consensus 78 ~~~~~i~v~d~~~~~s~-~~~~~~~-----------------------------------------~~l~~~-------- 107 (170)
T 1z0j_A 78 GSAAAIIVYDITKEETF-STLKNWV-----------------------------------------RELRQH-------- 107 (170)
T ss_dssp TCSEEEEEEETTCHHHH-HHHHHHH-----------------------------------------HHHHHH--------
T ss_pred CCCEEEEEEECcCHHHH-HHHHHHH-----------------------------------------HHHHHh--------
Confidence 89999999999876321 1111111 001110
Q ss_pred cccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 222 LRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 222 ~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.....|+++|+||+|+... ++...+. ...+++.+||+++.|++++++.+.+.+.
T Consensus 108 ----------------~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 108 ----------------GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp ----------------SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ----------------CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 0112699999999998642 2333332 1246889999999999999999988653
No 75
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.66 E-value=2.7e-16 Score=133.91 Aligned_cols=152 Identities=16% Similarity=0.095 Sum_probs=99.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........|.++.+.....+.+++. .+.++||||...... .....++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 79 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-------LGPIYYRDS 79 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh-------hHHHHhccC
Confidence 69999999999999999999987654444555555555566666654 677889999644321 122345789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+..+ +..+
T Consensus 80 d~~i~v~d~~~~~s-~~~~~~~--------------------------------------------~~~~---------- 104 (170)
T 1z08_A 80 NGAILVYDITDEDS-FQKVKNW--------------------------------------------VKEL---------- 104 (170)
T ss_dssp SEEEEEEETTCHHH-HHHHHHH--------------------------------------------HHHH----------
T ss_pred CEEEEEEECcCHHH-HHHHHHH--------------------------------------------HHHH----------
Confidence 99999999987532 1111111 1110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.... ....|+++|+||+|+... ++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 105 --------~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 105 --------RKML---GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp --------HHHH---GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred --------HHhc---CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 0000 012699999999998642 33333322 24578999999999999999988754
No 76
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=8.2e-16 Score=132.24 Aligned_cols=153 Identities=22% Similarity=0.186 Sum_probs=101.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc-cccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV-ASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~-~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.+|+++|.+|||||||+|+|++..... ...|.++.+.....+.+++. .+.++||||..... ......++.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 83 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYYRD 83 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHccC
Confidence 699999999999999999999876543 34455666666666677764 78899999965432 122334678
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|+.++.. .+.+. .++..+.
T Consensus 84 ~d~ii~v~d~~~~~s-~~~~~--------------------------------------------~~~~~i~-------- 110 (180)
T 2g6b_A 84 AHALLLLYDVTNKAS-FDNIQ--------------------------------------------AWLTEIH-------- 110 (180)
T ss_dssp CSEEEEEEETTCHHH-HHTHH--------------------------------------------HHHHHHH--------
T ss_pred CCEEEEEEECCCHHH-HHHHH--------------------------------------------HHHHHHH--------
Confidence 999999999987532 11111 1111100
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.. .....|+++|+||+|+.. .++...+. ...+++.+||+++.|++++++.+.+.+.
T Consensus 111 ----------~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 111 ----------EY---AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp ----------HH---SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------Hh---CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 001269999999999974 22333332 1247899999999999999999987653
No 77
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.66 E-value=2.6e-16 Score=137.10 Aligned_cols=151 Identities=19% Similarity=0.136 Sum_probs=100.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+++|.+|||||||+|+|++....... ..|.......+.+.+..+.++||||...... .....++.+|+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~d~ 93 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQFNEDM--IPTVGFNMRKITKGNVTIKLWDIGGQPRFRS-------MWERYCRGVSA 93 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEETTEEEEEEEECCSHHHHT-------THHHHHTTCSE
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCCCCcc--CCCCceeEEEEEeCCEEEEEEECCCCHhHHH-------HHHHHHccCCE
Confidence 79999999999999999999976543221 2244444556777889999999999754321 12224588999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|+.++..- +.+.. .+..+
T Consensus 94 ii~v~D~~~~~s~-~~~~~--------------------------------------------~~~~~------------ 116 (188)
T 1zd9_A 94 IVYMVDAADQEKI-EASKN--------------------------------------------ELHNL------------ 116 (188)
T ss_dssp EEEEEETTCGGGH-HHHHH--------------------------------------------HHHHH------------
T ss_pred EEEEEECCCHHHH-HHHHH--------------------------------------------HHHHH------------
Confidence 9999999875321 11111 11110
Q ss_pred CChhHHHHHHhc-ccccccEEEEEecCCcCCH---HHHH-HHh------cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 226 ATADDLIDVIEG-SRIYMPCIYVINKIDQITL---EELE-ILD------KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 226 ~t~~~~~~~l~~-~~~~~p~i~v~NK~Dl~~~---~~l~-~l~------~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+.. .....|+++|+||+|+... +++. .+. ...+++.+||+++.|++++++.+.+.+.
T Consensus 117 ---------~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 117 ---------LDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp ---------HTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred ---------HhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 000 0013699999999999743 2332 211 1124789999999999999999988664
No 78
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.66 E-value=2.5e-16 Score=157.19 Aligned_cols=148 Identities=28% Similarity=0.295 Sum_probs=101.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc-------ccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF-------SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVIS 138 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~-------~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~ 138 (381)
.+|+++|++|+|||||+++|++.. .+.+..+++|++.....+.+++..+.++||||..+. ...+..
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~-------~~~~~~ 92 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL-------IRAVVS 92 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH-------HHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH-------HHHHHH
Confidence 699999999999999999999876 234556789999988889999999999999998553 245556
Q ss_pred ccCCcchhHHHHhcCCChH-HHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccC
Q 016864 139 TARTCNCILIVLDAIKPIT-HKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHN 217 (381)
Q Consensus 139 ~~~~~d~il~vvd~~~~~~-~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~ 217 (381)
.+..+|++++|+|+.++.. +..... .++..+
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l--------------------------------------------~~~~~~---- 124 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHM--------------------------------------------LILDHF---- 124 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHH--------------------------------------------HHHHHT----
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHH--------------------------------------------HHHHHc----
Confidence 6789999999999987521 111100 011111
Q ss_pred CccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH-------H-Hhc-----CCCeeeecccccccHHHHHH
Q 016864 218 ADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE-------I-LDK-----LPHYCPVSAHLEWNLDGLLE 284 (381)
Q Consensus 218 ~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~-------~-l~~-----~~~~v~vSa~~~~gl~~L~~ 284 (381)
..|.|+|+||+|+...+.++ . +.. ..+++++||+++.|+++|++
T Consensus 125 -----------------------~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~ 181 (482)
T 1wb1_A 125 -----------------------NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKN 181 (482)
T ss_dssp -----------------------TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHH
T ss_pred -----------------------CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHH
Confidence 25889999999998654321 1 111 35789999999999999999
Q ss_pred HHHHHcC
Q 016864 285 KIWEYLN 291 (381)
Q Consensus 285 ~i~~~l~ 291 (381)
.+.+.++
T Consensus 182 ~L~~~i~ 188 (482)
T 1wb1_A 182 LIITTLN 188 (482)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9988654
No 79
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.65 E-value=2.3e-16 Score=138.19 Aligned_cols=152 Identities=18% Similarity=0.074 Sum_probs=98.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
..+|+++|++|||||||+|+|++.... .. ..|++.....+.+++..+.++||||..... ......++.+|
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 98 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNICFTVWDVGGQDKIR-------PLWRHYFQNTQ 98 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEETTEEEEEEECC-----C-------TTHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEECCEEEEEEECCCCHhHH-------HHHHHHhccCC
Confidence 379999999999999999999875432 22 225556667788889999999999975432 11122457899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|+.++.. .+.+..++. .++...
T Consensus 99 ~iilv~D~~~~~s-~~~~~~~l~----------------------------------------~~~~~~----------- 126 (192)
T 2b6h_A 99 GLIFVVDSNDRER-VQESADELQ----------------------------------------KMLQED----------- 126 (192)
T ss_dssp EEEEEEETTCGGG-HHHHHHHHH----------------------------------------HHHTCG-----------
T ss_pred EEEEEEECCCHHH-HHHHHHHHH----------------------------------------HHhccc-----------
Confidence 9999999987632 111111110 110000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH---HHHHHHhc-------CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL---EELEILDK-------LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~~l~~-------~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.....|+++|+||+|+... +++..... ..+++.+||+++.|++++++.+.+.+.
T Consensus 127 -------------~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 127 -------------ELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp -------------GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred -------------ccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 0012699999999999753 33322111 124789999999999999999987653
No 80
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.65 E-value=8.5e-16 Score=132.28 Aligned_cols=153 Identities=16% Similarity=0.118 Sum_probs=102.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 85 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYYRGA 85 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG-------GGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh-------hhhHHHhccC
Confidence 6899999999999999999998765444444444455555666664 478999999965432 1222345789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++.. .+.+.. ++..+.
T Consensus 86 d~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~~~--------- 111 (181)
T 2efe_B 86 AAAIIVFDVTNQAS-FERAKK--------------------------------------------WVQELQ--------- 111 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHH--------------------------------------------HHHHHH---------
T ss_pred CEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHHH---------
Confidence 99999999987532 111111 111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.......|+++|+||+|+.. .++...+.. ..+++.+||+++.|++++++.+.+.+.
T Consensus 112 ------------~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 112 ------------AQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp ------------HHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred ------------HhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00001269999999999963 233333321 235889999999999999999998764
No 81
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.65 E-value=2.2e-16 Score=139.10 Aligned_cols=152 Identities=20% Similarity=0.108 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........|.++.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~~~~ 98 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS-------VTRSYYRGA 98 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC-------CCHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH-------HHHHHhccC
Confidence 6999999999999999999998765545556666677677777777 6889999999754321 122245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++... +.+. .++..+.
T Consensus 99 d~~i~v~d~~~~~s~-~~~~--------------------------------------------~~~~~~~--------- 124 (200)
T 2o52_A 99 AGALLVYDITSRETY-NSLA--------------------------------------------AWLTDAR--------- 124 (200)
T ss_dssp SEEEEEEETTCHHHH-HTHH--------------------------------------------HHHHHHH---------
T ss_pred CEEEEEEECcCHHHH-HHHH--------------------------------------------HHHHHHH---------
Confidence 999999999875321 1111 1111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. .....|+++|+||+|+... .+...+. ...+++.+||+++.|++++++.+.+.+
T Consensus 125 ---------~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 125 ---------TL---ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp ---------HH---TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---------Hh---cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0012699999999998632 2233222 123578999999999999999887754
No 82
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.65 E-value=4.1e-16 Score=137.87 Aligned_cols=84 Identities=21% Similarity=0.230 Sum_probs=62.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEE--eeecCcccccccccCCCcchhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAK--IQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~--i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..+|+++|.+|||||||++++++.. ..+.++.|+.+.....+.+++.. +.++||||..... ......++.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 101 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSYPQ 101 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC-CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT-------TTGGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC-CCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHhcc
Confidence 3899999999999999999998653 34566777777766677777655 4599999975432 122235689
Q ss_pred cchhHHHHhcCCCh
Q 016864 143 CNCILIVLDAIKPI 156 (381)
Q Consensus 143 ~d~il~vvd~~~~~ 156 (381)
+|++++|+|+.++.
T Consensus 102 ~d~~i~v~d~~~~~ 115 (204)
T 4gzl_A 102 TDVFLICFSLVSPA 115 (204)
T ss_dssp CSEEEEEEETTCHH
T ss_pred CCEEEEEEECCCHH
Confidence 99999999998764
No 83
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=9.1e-16 Score=134.04 Aligned_cols=151 Identities=18% Similarity=0.169 Sum_probs=101.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+++|++.. ....+..|+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~ 90 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDA-FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD-------RLRPLSYPMT 90 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSST-------TTGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchh-------HHHHHhcCCC
Confidence 699999999999999999999864 335566777666666667666 678899999975432 1122346889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++..- +.+.. .++..
T Consensus 91 d~~i~v~d~~~~~s~-~~~~~-------------------------------------------~~~~~----------- 115 (194)
T 2atx_A 91 DVFLICFSVVNPASF-QNVKE-------------------------------------------EWVPE----------- 115 (194)
T ss_dssp SEEEEEEETTCHHHH-HHHHH-------------------------------------------THHHH-----------
T ss_pred CEEEEEEECCCHHHH-HHHHH-------------------------------------------HHHHH-----------
Confidence 999999999876321 11110 01110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH-----------------HHHHHh---cCCCeeeecccccccHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-----------------ELEILD---KLPHYCPVSAHLEWNLDGLL 283 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-----------------~l~~l~---~~~~~v~vSa~~~~gl~~L~ 283 (381)
+.......|+++|+||+|+.... +...+. ...+++.+||+++.|+++++
T Consensus 116 -----------~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 184 (194)
T 2atx_A 116 -----------LKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184 (194)
T ss_dssp -----------HHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHH
T ss_pred -----------HHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHH
Confidence 00000126999999999997431 122221 22378999999999999999
Q ss_pred HHHHHHc
Q 016864 284 EKIWEYL 290 (381)
Q Consensus 284 ~~i~~~l 290 (381)
+.+.+.+
T Consensus 185 ~~l~~~i 191 (194)
T 2atx_A 185 DEAIIAI 191 (194)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 84
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.65 E-value=6.2e-16 Score=133.61 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=100.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+++|++... ...+..|+.+.....+.+++. .+.++||||..... ......++.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 77 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQT 77 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGT-------TTGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHH-------HHHHHhccCC
Confidence 6899999999999999999997543 345556666655556677765 45699999985432 1122246889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++..... +.. .++..
T Consensus 78 d~~i~v~d~~~~~s~~~-~~~-------------------------------------------~~~~~----------- 102 (186)
T 1mh1_A 78 DVSLICFSLVSPASFEN-VRA-------------------------------------------KWYPE----------- 102 (186)
T ss_dssp SEEEEEEETTCHHHHHH-HHH-------------------------------------------THHHH-----------
T ss_pred cEEEEEEECCChhhHHH-HHH-------------------------------------------HHHHH-----------
Confidence 99999999987532111 100 00000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH-----------------HHHHHh---cCCCeeeecccccccHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-----------------ELEILD---KLPHYCPVSAHLEWNLDGLL 283 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-----------------~l~~l~---~~~~~v~vSa~~~~gl~~L~ 283 (381)
+.......|+++|+||+|+.... +...+. ...+++.+||+++.|+++++
T Consensus 103 -----------~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 103 -----------VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171 (186)
T ss_dssp -----------HHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred -----------HHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHH
Confidence 00000126999999999986432 111121 12368999999999999999
Q ss_pred HHHHHHcC
Q 016864 284 EKIWEYLN 291 (381)
Q Consensus 284 ~~i~~~l~ 291 (381)
+.+.+.+.
T Consensus 172 ~~l~~~~~ 179 (186)
T 1mh1_A 172 DEAIRAVL 179 (186)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 99988764
No 85
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.65 E-value=4.5e-16 Score=131.85 Aligned_cols=152 Identities=24% Similarity=0.168 Sum_probs=100.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++.. ....+++|+.+.....+.+++. .+.++||||..+.. ......++.+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 76 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 76 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc-cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH-------HHHHHHhhcC
Confidence 689999999999999999999865 3355666776666666777764 78899999965422 1122245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+..++. .+..
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~----------------------------------------~i~~------------ 103 (168)
T 1u8z_A 77 EGFLCVFSITEMES-FAATADFRE----------------------------------------QILR------------ 103 (168)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHH----------------------------------------HHHH------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHH----------------------------------------HHHH------------
Confidence 99999999987532 111111110 1111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
... ...+|+++|+||+|+... ++...+. ...+++.+||+++.|++++++.+.+.+
T Consensus 104 ----------~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 104 ----------VKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ----------HHC--CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------hcC--CCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 000 012699999999998642 2333222 124689999999999999999987754
No 86
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.65 E-value=6.7e-16 Score=132.66 Aligned_cols=152 Identities=22% Similarity=0.246 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++.. ...+++.||.+.....+.+++. .+.++||||..+... .....++.+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~ 81 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY-FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA-------MREQYMRAG 81 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC-------CHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHHhhC
Confidence 699999999999999999999863 4466777777776677778764 678899999654321 111234678
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+..++ ..++..
T Consensus 82 d~~i~v~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~----------- 109 (181)
T 2fn4_A 82 HGFLLVFAINDRQS-FNEVGKLF----------------------------------------TQILRV----------- 109 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH----------------------------------------HHHHHH-----------
T ss_pred CEEEEEEeCCCHHH-HHHHHHHH----------------------------------------HHHHHh-----------
Confidence 99999999987532 11111111 011111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. ....|+++|+||+|+... ++...+. ...+++.+||+++.|++++++.+.+.+
T Consensus 110 -----------~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 110 -----------KD--RDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp -----------HT--SSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------cC--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 10 112699999999998742 2333332 234578999999999999999988765
No 87
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.65 E-value=3.4e-16 Score=157.14 Aligned_cols=152 Identities=18% Similarity=0.089 Sum_probs=107.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
.+|+|+|.+|||||||+|+|++.. .+. .+.|++...+.+.+++..+.++||||..... ......++.+|+
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~-~~~--~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ad~ 392 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQ-SVT--TIPTVGFNVETVTYKNVKFNVWDVGGQDKIR-------PLWRHYYTGTQG 392 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS-CCC--CCCCSSEEEEEEESSSCEEEEEEECCCGGGS-------GGGGGGGTTCCE
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCC-CCC--cCCccceeEEEEEeCCEEEEEEECCCcHHHH-------HHHHHHhccCCE
Confidence 799999999999999999999876 222 3458888888899899999999999965432 223345689999
Q ss_pred hHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccccC
Q 016864 146 ILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRYD 225 (381)
Q Consensus 146 il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e 225 (381)
+++|+|++++..- +.+..++ ..++...
T Consensus 393 ~i~V~D~~~~~s~-~~~~~~~----------------------------------------~~~~~~~------------ 419 (497)
T 3lvq_E 393 LIFVVDCADRDRI-DEARQEL----------------------------------------HRIINDR------------ 419 (497)
T ss_dssp EEEEEETTCGGGH-HHHHHHH----------------------------------------HHHHTSG------------
T ss_pred EEEEEECcchhHH-HHHHHHH----------------------------------------HHHhhhh------------
Confidence 9999999876321 1111111 0111100
Q ss_pred CChhHHHHHHhcccccccEEEEEecCCcCCH---HHHHHHhc-------CCCeeeecccccccHHHHHHHHHHHcCC
Q 016864 226 ATADDLIDVIEGSRIYMPCIYVINKIDQITL---EELEILDK-------LPHYCPVSAHLEWNLDGLLEKIWEYLNL 292 (381)
Q Consensus 226 ~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~~l~~-------~~~~v~vSa~~~~gl~~L~~~i~~~l~~ 292 (381)
....+|+|+|+||+|+... +++..... ..+++.+||+++.|++++++.|.+.+..
T Consensus 420 ------------~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 420 ------------EMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp ------------GGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred ------------hcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 0113799999999999743 33332211 1148899999999999999999998763
No 88
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.65 E-value=4.7e-16 Score=132.39 Aligned_cols=154 Identities=23% Similarity=0.132 Sum_probs=93.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+.+|.+.....+.+++. .+.++||||....... .....++.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~~~~ 76 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW------LQDHCLQTG 76 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------CHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh------hhhhhhccC
Confidence 68999999999999999999987665555666777878888888874 5678999997543210 011124668
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++.. .+.+..++ ..+....
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~~---------- 105 (169)
T 3q85_A 77 DAFLIVFSVTDRRS-FSKVPETL----------------------------------------LRLRAGR---------- 105 (169)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHH----------------------------------------HHHHHHS----------
T ss_pred CEEEEEEECCChHH-HHHHHHHH----------------------------------------HHHHhcc----------
Confidence 99999999987532 11111111 0111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+++|+||+|+.. .++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 106 --------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 106 --------------PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp --------------TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------cCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 001269999999999863 223333321 23679999999999999999998764
No 89
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.65 E-value=8e-16 Score=130.13 Aligned_cols=152 Identities=20% Similarity=0.141 Sum_probs=99.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|++++.... ..+..|+.+.....+.+++. .+.++||||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 75 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-------SMRDLYIKNG 75 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc-ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHhccC
Confidence 68999999999999999999876432 34555555555666677765 48899999964422 1112235778
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++... +.+...+ ..++..
T Consensus 76 ~~~i~v~d~~~~~s~-~~~~~~~----------------------------------------~~i~~~----------- 103 (167)
T 1kao_A 76 QGFILVYSLVNQQSF-QDIKPMR----------------------------------------DQIIRV----------- 103 (167)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHH----------------------------------------HHHHHH-----------
T ss_pred CEEEEEEeCCCHHHH-HHHHHHH----------------------------------------HHHHHh-----------
Confidence 999999999875321 1111111 011110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. ....|+++|+||+|+... ++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 104 -----------~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 104 -----------KR--YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp -----------TT--TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred -----------cC--CCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 00 012699999999998632 22222221 24689999999999999999987754
No 90
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.65 E-value=4.1e-16 Score=135.15 Aligned_cols=151 Identities=19% Similarity=0.162 Sum_probs=98.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
..+|+++|++|||||||+++|++.... .+ ..|.......+.+++..+.++||||..... ......++.+|
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~--~~-~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~~ 85 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDIS--HI-TPTQGFNIKSVQSQGFKLNVWDIGGQRKIR-------PYWRSYFENTD 85 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCE--EE-EEETTEEEEEEEETTEEEEEEECSSCGGGH-------HHHHHHHTTCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cc-cCcCCeEEEEEEECCEEEEEEECCCCHHHH-------HHHHHHhCCCC
Confidence 379999999999999999999986421 11 112222334677789999999999975421 12223458899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|++++..- +.+.. .+..+
T Consensus 86 ~~i~v~d~~~~~s~-~~~~~--------------------------------------------~~~~~----------- 109 (181)
T 1fzq_A 86 ILIYVIDSADRKRF-EETGQ--------------------------------------------ELTEL----------- 109 (181)
T ss_dssp EEEEEEETTCGGGH-HHHHH--------------------------------------------HHHHH-----------
T ss_pred EEEEEEECcCHHHH-HHHHH--------------------------------------------HHHHH-----------
Confidence 99999999876321 11111 11111
Q ss_pred CCChhHHHHHHhc-ccccccEEEEEecCCcCCH---HHHHHHhc-------CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 225 DATADDLIDVIEG-SRIYMPCIYVINKIDQITL---EELEILDK-------LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 225 e~t~~~~~~~l~~-~~~~~p~i~v~NK~Dl~~~---~~l~~l~~-------~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+.. .....|+++|+||+|+... +++..... ..+++.+||+++.|++++++.+.+.+.
T Consensus 110 ----------~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 110 ----------LEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp ----------TTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred ----------HhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 000 0112699999999999743 23322111 124788999999999999999987653
No 91
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.65 E-value=1e-15 Score=133.30 Aligned_cols=152 Identities=18% Similarity=0.135 Sum_probs=99.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 95 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYR-------TITTAYYRGA 95 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSC-------CSGGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHh-------hhHHHhccCC
Confidence 6999999999999999999998764433333334444444555554 578999999964432 1223356889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+. .++..+.
T Consensus 96 d~ii~v~d~~~~~s-~~~~~--------------------------------------------~~~~~i~--------- 121 (189)
T 2gf9_A 96 MGFLLMYDIANQES-FAAVQ--------------------------------------------DWATQIK--------- 121 (189)
T ss_dssp SEEEEEEETTCHHH-HHTHH--------------------------------------------HHHHHHH---------
T ss_pred CEEEEEEECCCHHH-HHHHH--------------------------------------------HHHHHHH---------
Confidence 99999999987532 11111 1111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. . .....|+++|+||+|+... ++.+.+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 122 ---------~-~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 122 ---------T-Y--SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp ---------H-H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 0 0012699999999998642 23333321 23689999999999999999987754
No 92
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=138.26 Aligned_cols=152 Identities=18% Similarity=0.135 Sum_probs=97.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 102 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR-------TITQSYYRSA 102 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGH-------HHHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHHhhC
Confidence 6999999999999999999987654322233334556666777777 588999999975432 1222346889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+. .++..+.
T Consensus 103 d~iilv~D~~~~~s-~~~~~--------------------------------------------~~~~~i~--------- 128 (201)
T 2hup_A 103 NGAILAYDITKRSS-FLSVP--------------------------------------------HWIEDVR--------- 128 (201)
T ss_dssp SEEEEEEETTBHHH-HHTHH--------------------------------------------HHHHHHH---------
T ss_pred CEEEEEEECCCHHH-HHHHH--------------------------------------------HHHHHHH---------
Confidence 99999999876532 11111 1111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHh---cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILD---KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. .....|+++|+||+|+.. .++...+. ...+++.+||+++.|++++++.+.+.+
T Consensus 129 ---------~~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 129 ---------KY---AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp ---------HH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------Hh---cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 001269999999999864 23343332 222678999999999999999988765
No 93
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.65 E-value=6.2e-16 Score=131.37 Aligned_cols=153 Identities=15% Similarity=0.100 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc--CEEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR--GAKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~--g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+..+.+.....+.++ +..+.++||||..... ......++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH-------SLAPMYYRGA 79 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh-------hhhHHhccCC
Confidence 699999999999999999999765332222222223333344554 4578999999965432 1222345889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+.. ++..+.
T Consensus 80 d~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~~~--------- 105 (170)
T 1r2q_A 80 QAAIVVYDITNEES-FARAKN--------------------------------------------WVKELQ--------- 105 (170)
T ss_dssp SEEEEEEETTCHHH-HHHHHH--------------------------------------------HHHHHH---------
T ss_pred CEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHHH---------
Confidence 99999999987532 111111 111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.......|+++|+||+|+... ++...+. ...+++.+||+++.|++++++.+.+.+.
T Consensus 106 ------------~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 106 ------------RQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp ------------HHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred ------------HhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 000112699999999998632 3333332 1235788999999999999999988653
No 94
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.64 E-value=9.4e-16 Score=133.22 Aligned_cols=153 Identities=17% Similarity=0.083 Sum_probs=98.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeee-cEEEEEcC-----------EEeeecCcccccccccCCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCI-PGVITYRG-----------AKIQLLDLPGIIEGAKDGKGRG 133 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~-~g~i~~~g-----------~~i~l~DtpG~~~~~~~~~~~~ 133 (381)
.+|+++|.+|||||||+|+|++........+..+.+.. ...+.+++ ..+.++||||.....
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------- 84 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR------- 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH-------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH-------
Confidence 69999999999999999999986543232333333333 33444443 488999999975432
Q ss_pred hhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHh
Q 016864 134 RQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEY 213 (381)
Q Consensus 134 ~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~ 213 (381)
......++.+|++++|+|+.++... +.+. .++..+
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~--------------------------------------------~~~~~i 119 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSF-LNVR--------------------------------------------NWISQL 119 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHH-HTHH--------------------------------------------HHHHHH
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHH-HHHH--------------------------------------------HHHHHH
Confidence 2233456899999999999875321 1111 111110
Q ss_pred cccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHh--cCCCeeeecccccccHHHHHHHH
Q 016864 214 RIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILD--KLPHYCPVSAHLEWNLDGLLEKI 286 (381)
Q Consensus 214 ~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i 286 (381)
. ... .....|+++|+||+|+.. .++...+. ...+++.+||+++.|++++++.+
T Consensus 120 ~------------------~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 179 (195)
T 3bc1_A 120 Q------------------MHA--YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEML 179 (195)
T ss_dssp H------------------HHS--SSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred H------------------Hhc--CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 0 000 001269999999999864 23333332 12478999999999999999988
Q ss_pred HHHc
Q 016864 287 WEYL 290 (381)
Q Consensus 287 ~~~l 290 (381)
.+.+
T Consensus 180 ~~~~ 183 (195)
T 3bc1_A 180 LDLI 183 (195)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 95
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.64 E-value=9.3e-16 Score=137.44 Aligned_cols=153 Identities=22% Similarity=0.171 Sum_probs=99.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........|..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 86 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYR-------AITSAYYRGA 86 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTT-------CCCGGGTTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchh-------hhHHHHhccC
Confidence 6999999999999999999998765545556666666677778877 588999999965432 1122346889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++... +.+.. ++..+.
T Consensus 87 d~vilV~D~~~~~s~-~~~~~--------------------------------------------~l~~i~--------- 112 (223)
T 3cpj_B 87 VGALIVYDISKSSSY-ENCNH--------------------------------------------WLSELR--------- 112 (223)
T ss_dssp CEEEEEEC-CCHHHH-HHHHH--------------------------------------------HHHHHH---------
T ss_pred CEEEEEEeCCCHHHH-HHHHH--------------------------------------------HHHHHH---------
Confidence 999999999876321 11111 111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.. .....|+++|+||+|+.. .++...+.. ..+++.+||+++.|++++++.+.+.+.
T Consensus 113 ---------~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 113 ---------EN---ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp ---------HH---CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred ---------Hh---CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 001269999999999863 233333321 236788999999999999999988764
No 96
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.64 E-value=9e-16 Score=133.91 Aligned_cols=152 Identities=20% Similarity=0.118 Sum_probs=100.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+.++.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 94 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS-------ITRSYYRGA 94 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC-------CCHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh-------hHHHHhccC
Confidence 6999999999999999999998765544455556666667777776 4789999999654321 122245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++.. .+.+. .++..+..
T Consensus 95 d~ii~v~d~~~~~s-~~~~~--------------------------------------------~~l~~i~~-------- 121 (191)
T 2a5j_A 95 AGALLVYDITRRET-FNHLT--------------------------------------------SWLEDARQ-------- 121 (191)
T ss_dssp SEEEEEEETTCHHH-HHTHH--------------------------------------------HHHHHHHH--------
T ss_pred CEEEEEEECCCHHH-HHHHH--------------------------------------------HHHHHHHH--------
Confidence 99999999987532 11111 11111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
......|+++|+||+|+.. .++.+.+. ...+++.+||+++.|++++++.+.+.+
T Consensus 122 -------------~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 122 -------------HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp -------------HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------hcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0011269999999999863 23333332 124678999999999999999887654
No 97
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.64 E-value=4.9e-16 Score=138.33 Aligned_cols=153 Identities=16% Similarity=0.111 Sum_probs=100.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc------------CEEeeecCcccccccccCCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR------------GAKIQLLDLPGIIEGAKDGKGRG 133 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~------------g~~i~l~DtpG~~~~~~~~~~~~ 133 (381)
.+|+++|.+|||||||+|+|++........+.++.+.....+.++ ...+.++||||.....
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~------- 98 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR------- 98 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH-------
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH-------
Confidence 699999999999999999999865433333333444444555555 3578999999965432
Q ss_pred hhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHh
Q 016864 134 RQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEY 213 (381)
Q Consensus 134 ~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~ 213 (381)
......++.+|++++|+|+.++.. .+.+. .++..+
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s-~~~~~--------------------------------------------~~l~~i 133 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQS-FLNVR--------------------------------------------NWMSQL 133 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHH-HHHHH--------------------------------------------HHHHTC
T ss_pred hHHHHHhcCCCEEEEEEECcCHHH-HHHHH--------------------------------------------HHHHHH
Confidence 222335688999999999987532 11111 222211
Q ss_pred cccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHH
Q 016864 214 RIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKI 286 (381)
Q Consensus 214 ~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i 286 (381)
.... .....|+++|+||+|+.. .++.+.+.. ..+++.+||+++.|++++++.+
T Consensus 134 ~~~~--------------------~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 193 (217)
T 2f7s_A 134 QANA--------------------YCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193 (217)
T ss_dssp CCCC--------------------TTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHH
T ss_pred HHhc--------------------CcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHH
Confidence 1000 001269999999999864 233333321 2468999999999999999988
Q ss_pred HHHc
Q 016864 287 WEYL 290 (381)
Q Consensus 287 ~~~l 290 (381)
.+.+
T Consensus 194 ~~~i 197 (217)
T 2f7s_A 194 LDLI 197 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.64 E-value=4.4e-16 Score=135.49 Aligned_cols=152 Identities=18% Similarity=0.125 Sum_probs=100.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
..+|+++|.+|||||||+|+|++.... ...| |+......+.+++..+.++||||...... .....++.+|
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~d 91 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKNISFEVWDLGGQTGVRP-------YWRCYFSDTD 91 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETTEEEEEEEECCSSSSCC-------CCSSSSTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECCEEEEEEECCCCHhHHH-------HHHHHhhcCC
Confidence 379999999999999999999865432 2222 44455667788899999999999754321 1223457899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|+.++..- +.+...+ ..++...
T Consensus 92 ~ii~v~d~~~~~s~-~~~~~~~----------------------------------------~~~~~~~----------- 119 (189)
T 2x77_A 92 AVIYVVDSTDRDRM-GVAKHEL----------------------------------------YALLDED----------- 119 (189)
T ss_dssp EEEEEEETTCCTTH-HHHHHHH----------------------------------------HHHHTCS-----------
T ss_pred EEEEEEeCCCHHHH-HHHHHHH----------------------------------------HHHHhhh-----------
Confidence 99999999876321 1111111 0111000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH---HHHHH-Hh--c----CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL---EELEI-LD--K----LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~~-l~--~----~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.....|+++|+||+|+... +++.. +. . ..+++.+||+++.|++++++.+.+.+.
T Consensus 120 -------------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 120 -------------ELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp -------------TTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -------------hcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence 0012699999999999754 33322 11 0 114789999999999999999987653
No 99
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.64 E-value=7.7e-17 Score=141.78 Aligned_cols=153 Identities=18% Similarity=0.110 Sum_probs=100.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+.+|.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 106 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 106 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC-------CCSCC--CCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH-------HHHHHHhhcC
Confidence 6999999999999999999998766666677888888888888887 568899999964432 1122346889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++... +.+. .++..+...
T Consensus 107 d~~i~v~d~~~~~s~-~~~~--------------------------------------------~~~~~i~~~------- 134 (199)
T 3l0i_B 107 HGIIVVYDVTDQESF-NNVK--------------------------------------------QWLQEIDRY------- 134 (199)
T ss_dssp SEEEECC-CCCSHHH-HHHH--------------------------------------------HHHHHHHSC-------
T ss_pred CEEEEEEECCCHHHH-HHHH--------------------------------------------HHHHHHHHh-------
Confidence 999999999886421 1111 111111000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH-----HHHHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-----ELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-----~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.....|+++|+||+|+.... +.+.+. ...+++.+||+++.|++++++.+.+.+.
T Consensus 135 --------------~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 135 --------------ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp --------------C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred --------------ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 01126999999999987432 222221 1246889999999999999999877553
No 100
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.64 E-value=7.8e-16 Score=135.45 Aligned_cols=152 Identities=23% Similarity=0.174 Sum_probs=103.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++.. ....+++|+.+.....+.+++. .+.++||||..... ......++.+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 86 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 86 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-------HHHHHHHhhC
Confidence 799999999999999999999865 3456777877777777788774 78899999964432 1122235678
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+..+ +..+
T Consensus 87 ~~~i~v~d~~~~~s-~~~~~~~--------------------------------------------~~~i---------- 111 (206)
T 2bov_A 87 EGFLCVFSITEMES-FAATADF--------------------------------------------REQI---------- 111 (206)
T ss_dssp SEEEEEEETTCHHH-HHHHHHH--------------------------------------------HHHH----------
T ss_pred CEEEEEEECCCHHH-HHHHHHH--------------------------------------------HHHH----------
Confidence 99999999987532 1111111 1110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
..... ....|+++|+||+|+... ++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 112 --------~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 112 --------LRVKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp --------HHHTT--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred --------HHhcC--CCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00000 012699999999998642 23332221 23689999999999999999887755
No 101
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.64 E-value=6.7e-16 Score=132.42 Aligned_cols=152 Identities=20% Similarity=0.136 Sum_probs=98.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+.++.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 88 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR-------AVTRSYYRGA 88 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC-------HHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh-------hhHHHHhccC
Confidence 6999999999999999999998754322223333344445556655 478899999964422 2223345789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++... +.+. .++..+.
T Consensus 89 d~~i~v~d~~~~~s~-~~~~--------------------------------------------~~~~~~~--------- 114 (179)
T 1z0f_A 89 AGALMVYDITRRSTY-NHLS--------------------------------------------SWLTDAR--------- 114 (179)
T ss_dssp SEEEEEEETTCHHHH-HTHH--------------------------------------------HHHHHHH---------
T ss_pred CEEEEEEeCcCHHHH-HHHH--------------------------------------------HHHHHHH---------
Confidence 999999999876321 1111 1111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. . .....|+++|+||+|+... ++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 115 ---------~-~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 115 ---------N-L--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp ---------H-H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0 0012699999999998632 33333321 23678999999999999999988765
No 102
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.64 E-value=7.1e-16 Score=130.72 Aligned_cols=152 Identities=17% Similarity=0.117 Sum_probs=98.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++... ...+..|+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 75 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT-------AMRDLYMKNG 75 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST-------THHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhccC
Confidence 6899999999999999999998543 23444555544444455553 478899999965432 1112234678
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+..++ ..++..
T Consensus 76 d~~i~v~d~~~~~s-~~~~~~~~----------------------------------------~~i~~~----------- 103 (167)
T 1c1y_A 76 QGFALVYSITAQST-FNDLQDLR----------------------------------------EQILRV----------- 103 (167)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHH----------------------------------------HHHHHH-----------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH----------------------------------------HHHHHh-----------
Confidence 99999999887532 11111110 011110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHh-c--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILD-K--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~-~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. ....|+++|+||+|+.. .++...+. . ..+++.+||+++.|++++++.+.+.+
T Consensus 104 -----------~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 104 -----------KD--TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp -----------HC--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------hC--cCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 00 11369999999999863 23333332 2 34689999999999999999998764
No 103
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1.4e-15 Score=132.48 Aligned_cols=154 Identities=21% Similarity=0.148 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++........|..+.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 88 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-------LTPSYYRGA 88 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-------SHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh-------hhHHHhccC
Confidence 6999999999999999999998764434444445555556666665 5788999999654321 122345889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++... +.+ ..++..+....
T Consensus 89 d~ii~v~d~~~~~s~-~~~--------------------------------------------~~~~~~i~~~~------ 117 (195)
T 1x3s_A 89 QGVILVYDVTRRDTF-VKL--------------------------------------------DNWLNELETYC------ 117 (195)
T ss_dssp CEEEEEEETTCHHHH-HTH--------------------------------------------HHHHHHHTTCC------
T ss_pred CEEEEEEECcCHHHH-HHH--------------------------------------------HHHHHHHHHhc------
Confidence 999999999875321 111 11111111000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC----HHHHHHHh-c-CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT----LEELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~----~~~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
....+|+++|+||+|+.. .++...+. . ...++.+||+++.|++++++.+.+.+.
T Consensus 118 --------------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 118 --------------TRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 177 (195)
T ss_dssp --------------SCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred --------------CcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 011269999999999853 23333322 1 235788999999999999999988653
No 104
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.63 E-value=2.1e-15 Score=128.96 Aligned_cols=153 Identities=21% Similarity=0.124 Sum_probs=92.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc-ccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE-VASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~-~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.+|+++|++|||||||+|+|++.... ..+.+++| .....+.+++. .+.++||||....... ......++.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----~~~~~~~~~ 77 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGEDTTLVVVDTWEAEKLDKS-----WSQESCLQG 77 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEEEEEEEECCC-------C-----HHHHHTTTS
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEEEEEEEEecCCCCccchh-----hhHHhhccc
Confidence 68999999999999999999987643 23333443 34456677764 6789999997542100 111224578
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|..++.. .+.+..++. .+....
T Consensus 78 ~~~~i~v~d~~~~~s-~~~~~~~~~-----------------------------------------~l~~~~-------- 107 (175)
T 2nzj_A 78 GSAYVIVYSIADRGS-FESASELRI-----------------------------------------QLRRTH-------- 107 (175)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHH-----------------------------------------HHHHCC--------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHH-----------------------------------------HHHHhh--------
Confidence 899999999887532 111111110 000000
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
....+|+++|+||+|+... ++...+. ...+++.+||+++.|++++++.+.+.+
T Consensus 108 ---------------~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 108 ---------------QADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp -------------------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------ccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 0012699999999999742 2222221 123689999999999999999988765
No 105
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.63 E-value=9.9e-16 Score=133.70 Aligned_cols=152 Identities=21% Similarity=0.157 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc--CEEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR--GAKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~--g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+..+.+.....+.++ +..+.++||||..... ......++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 98 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR-------AITSAYYRGA 98 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC-------TTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHhccC
Confidence 699999999999999999999876443323322333333444444 3578899999975432 1122345789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++... +.+. .++..+..
T Consensus 99 d~vi~v~D~~~~~s~-~~~~--------------------------------------------~~l~~i~~-------- 125 (193)
T 2oil_A 99 VGALLVFDLTKHQTY-AVVE--------------------------------------------RWLKELYD-------- 125 (193)
T ss_dssp CEEEEEEETTCHHHH-HTHH--------------------------------------------HHHHHHHT--------
T ss_pred CEEEEEEECCCHHHH-HHHH--------------------------------------------HHHHHHHH--------
Confidence 999999999875321 1111 11111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
......|+++|+||+|+... ++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 126 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 126 -------------HAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp -------------TSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------hcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00112699999999998642 23333321 23588999999999999999887654
No 106
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1.2e-15 Score=134.99 Aligned_cols=82 Identities=21% Similarity=0.206 Sum_probs=56.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++.... ..+..|+.+.....+.+++ ..+.++||||..... ......+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 97 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYD-------RLRPLSYPDT 97 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCT-------TTGGGGCTTC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHH-------HHHHhhcCCC
Confidence 69999999999999999999986543 3344455544445567776 468899999975432 1122346889
Q ss_pred chhHHHHhcCCC
Q 016864 144 NCILIVLDAIKP 155 (381)
Q Consensus 144 d~il~vvd~~~~ 155 (381)
|++++|+|+.++
T Consensus 98 d~~i~v~d~~~~ 109 (207)
T 2fv8_A 98 DVILMCFSVDSP 109 (207)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998875
No 107
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.63 E-value=1.4e-15 Score=131.40 Aligned_cols=152 Identities=24% Similarity=0.179 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++.. ....+++|+.+.....+.+++. .+.++||||..... ......++.+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 90 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 90 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC-CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH-------HHHHHHhccC
Confidence 799999999999999999999865 3456677777777677777764 78899999965422 1222245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+..++. .++.
T Consensus 91 d~~i~v~d~~~~~s-~~~~~~~~~----------------------------------------~i~~------------ 117 (187)
T 2a9k_A 91 EGFLCVFSITEMES-FAATADFRE----------------------------------------QILR------------ 117 (187)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHH----------------------------------------HHHH------------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHH----------------------------------------HHHH------------
Confidence 99999999987532 111111110 1111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh-c-CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
... ....|+++|+||+|+... ++...+. . ..+++.+||+++.|++++++.+.+.+
T Consensus 118 ----------~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 118 ----------VKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp ----------HHC--CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------hcC--CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 110 012699999999998642 2333322 2 23678999999999999999987754
No 108
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=1.2e-15 Score=133.37 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc--ccccccceeeeecEEEEE--cCEEeeecCcccccccccCCCcchhhhhcccC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE--VASYEFTTLTCIPGVITY--RGAKIQLLDLPGIIEGAKDGKGRGRQVISTAR 141 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~--~~~~~~tT~~~~~g~i~~--~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 141 (381)
.+|+++|.+|||||||+|+|++.... ..+.+++|.... .+.+ .+..+.++||||..... ......++
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 94 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTK--TVPCGNELHKFLIWDTAGQERFH-------SLAPMYYR 94 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEE--EEECSSSEEEEEEEEECCSGGGG-------GGTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEE--EEEeCCEEEEEEEEcCCCchhhH-------hhhHHhhc
Confidence 69999999999999999999987532 233444444332 3333 34688999999965432 12223457
Q ss_pred CcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccc
Q 016864 142 TCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADIT 221 (381)
Q Consensus 142 ~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 221 (381)
.+|++++|+|+.++... +.+.. ++..+.
T Consensus 95 ~~d~iilV~d~~~~~s~-~~~~~--------------------------------------------~~~~i~------- 122 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSF-YTLKK--------------------------------------------WVKELK------- 122 (192)
T ss_dssp TCSEEEEEEETTCTHHH-HHHHH--------------------------------------------HHHHHH-------
T ss_pred cCCEEEEEEeCCCHHHH-HHHHH--------------------------------------------HHHHHH-------
Confidence 89999999999876421 11111 111110
Q ss_pred cccCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 222 LRYDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 222 ~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
. . .....|+++|+||+|+.. .++...+.. ..+++.+||+++.|++++++.+.+.+.
T Consensus 123 -----------~-~--~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 123 -----------E-H--GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp -----------H-H--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred -----------H-h--CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 0 0 001269999999999863 233433322 235789999999999999999998664
No 109
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.63 E-value=2.8e-15 Score=131.84 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=99.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 81 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR-------TITTAYYRGA 81 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc-------chHHHhhcCC
Confidence 6899999999999999999998764333333333344444555554 578999999975432 2233456889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+.. ++..+.
T Consensus 82 d~ii~v~d~~~~~s-~~~~~~--------------------------------------------~~~~i~--------- 107 (203)
T 1zbd_A 82 MGFILMYDITNEES-FNAVQD--------------------------------------------WSTQIK--------- 107 (203)
T ss_dssp SEEEEEEETTCHHH-HHHHHH--------------------------------------------HHHHHH---------
T ss_pred CEEEEEEECcCHHH-HHHHHH--------------------------------------------HHHHHH---------
Confidence 99999999987532 111111 111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. . .....|+++|+||+|+... ++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 108 ---------~-~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 108 ---------T-Y--SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp ---------H-H--SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 0 0012699999999998642 23333321 23689999999999999988887654
No 110
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.63 E-value=1.2e-15 Score=135.96 Aligned_cols=151 Identities=20% Similarity=0.152 Sum_probs=90.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++... ...+..|+.+.....+.+++. .+.++||||...... .....++.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~~~~ 106 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAF-PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR-------LRPLFYPDA 106 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------CE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhH-------HHHHHhccC
Confidence 6999999999999999999998653 244556666665666777664 688999999654321 112245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++..- +.+.. .++..
T Consensus 107 d~~i~v~d~~~~~s~-~~~~~-------------------------------------------~~~~~----------- 131 (214)
T 2j1l_A 107 SVLLLCFDVTSPNSF-DNIFN-------------------------------------------RWYPE----------- 131 (214)
T ss_dssp EEEEEEEETTCHHHH-HHHHH-------------------------------------------THHHH-----------
T ss_pred CEEEEEEECcCHHHH-HHHHH-------------------------------------------HHHHH-----------
Confidence 999999999875321 11110 01111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHHH-----------------HHHHh---cCCCeeeecccccccHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE-----------------LEILD---KLPHYCPVSAHLEWNLDGLL 283 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~-----------------l~~l~---~~~~~v~vSa~~~~gl~~L~ 283 (381)
+.......|+++|+||+|+..... ...+. ...+++.+||+++.|+++++
T Consensus 132 -----------~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~ 200 (214)
T 2j1l_A 132 -----------VNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200 (214)
T ss_dssp -----------HHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred -----------HHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 000001269999999999975321 12221 12368999999999999999
Q ss_pred HHHHHHc
Q 016864 284 EKIWEYL 290 (381)
Q Consensus 284 ~~i~~~l 290 (381)
+.+.+.+
T Consensus 201 ~~l~~~~ 207 (214)
T 2j1l_A 201 QEAAEVA 207 (214)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 111
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.63 E-value=3.2e-15 Score=130.02 Aligned_cols=153 Identities=22% Similarity=0.147 Sum_probs=99.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++.. ....+++|+.+.....+.+++. .+.++||||..... ......++.+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 93 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 93 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC-CccccCCccceEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHhhCcC
Confidence 699999999999999999999764 3345666777666677777764 58899999965432 1122346789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+..++. .+..
T Consensus 94 d~~i~v~d~~~~~s-~~~~~~~~~-----------------------------------------~i~~----------- 120 (190)
T 3con_A 94 EGFLCVFAINNSKS-FADINLYRE-----------------------------------------QIKR----------- 120 (190)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHH-----------------------------------------HHHH-----------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHH-----------------------------------------HHHH-----------
Confidence 99999999987532 111111110 0000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
... ....|+++|+||+|+.. .++...+.. ..+++.+||+++.|++++++.+.+.+.
T Consensus 121 ----------~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 121 ----------VKD--SDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp ----------HHT--CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------HhC--CCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 000 01269999999999874 233333321 237899999999999999999887653
No 112
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.62 E-value=2.7e-15 Score=132.17 Aligned_cols=82 Identities=21% Similarity=0.207 Sum_probs=58.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|++++.... ..+..|+.+.....+.+++. .+.++||||..... ......++.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 97 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYD-------RLRPLSYPDT 97 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGT-------TTGGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEEEEEEEECCCchhHH-------HHHHHhcCCC
Confidence 69999999999999999999986543 23333443333355677764 78899999965432 1122246889
Q ss_pred chhHHHHhcCCC
Q 016864 144 NCILIVLDAIKP 155 (381)
Q Consensus 144 d~il~vvd~~~~ 155 (381)
|++++|+|+.++
T Consensus 98 d~~i~v~d~~~~ 109 (201)
T 2gco_A 98 DVILMCFSIDSP 109 (201)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998875
No 113
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.62 E-value=4.5e-16 Score=134.16 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=90.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..+|+++|.+|||||||++++++.. ....+++|+.+.....+.+++ ..+.++||||..... ......++.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 79 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT-FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-------RLRPLSYRG 79 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC-CC----------CBCCCC-------CEEECCCC-CTTT-------TTGGGGGTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-------hhHHhhccC
Confidence 3799999999999999999999764 234555565544444444444 456699999975432 112234588
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|+.++..- +.+.. .++..
T Consensus 80 ~d~~i~v~d~~~~~s~-~~~~~-------------------------------------------~~~~~---------- 105 (182)
T 3bwd_D 80 ADVFILAFSLISKASY-ENVSK-------------------------------------------KWIPE---------- 105 (182)
T ss_dssp CSEEEEEEETTCHHHH-HHHHH-------------------------------------------THHHH----------
T ss_pred CCEEEEEEECCCHHHH-HHHHH-------------------------------------------HHHHH----------
Confidence 9999999999875321 11110 01110
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH---------------HHHHh---cCCCeeeecccccccHHHHHH
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE---------------LEILD---KLPHYCPVSAHLEWNLDGLLE 284 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~---------------l~~l~---~~~~~v~vSa~~~~gl~~L~~ 284 (381)
+.......|+++|+||+|+..... ...+. ...+++.+||+++.|++++++
T Consensus 106 ------------~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (182)
T 3bwd_D 106 ------------LKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFD 173 (182)
T ss_dssp ------------HHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHH
T ss_pred ------------HHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHH
Confidence 000001269999999999864322 22222 223689999999999999999
Q ss_pred HHHHHc
Q 016864 285 KIWEYL 290 (381)
Q Consensus 285 ~i~~~l 290 (381)
.+.+.+
T Consensus 174 ~l~~~i 179 (182)
T 3bwd_D 174 AAIRVV 179 (182)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 114
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.62 E-value=1e-15 Score=129.91 Aligned_cols=150 Identities=22% Similarity=0.145 Sum_probs=86.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.+|+++|.+|||||||+|+|++... ..++.+++|.+ ..+.+++ ..+.++||||...... .....++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRW-------LPGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchh-------hhhhhhhh
Confidence 6899999999999999999998764 44556677664 2345554 4678899999754321 11124578
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|..++.. .+.+..+ +..+...
T Consensus 73 ~~~~i~v~d~~~~~s-~~~~~~~--------------------------------------------~~~~~~~------ 101 (166)
T 3q72_A 73 GDAYVIVYSVTDKGS-FEKASEL--------------------------------------------RVQLRRA------ 101 (166)
T ss_dssp CCEEEEEEETTCHHH-HHHHHHH--------------------------------------------HHHHHHC------
T ss_pred CCEEEEEEECCCHHH-HHHHHHH--------------------------------------------HHHHHHh------
Confidence 999999999987632 1111111 1110000
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
......|+++|+||+|+... ++.+.+. ...+++.+||+++.|++++++.+.+.+
T Consensus 102 --------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 102 --------------RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp --------------C---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred --------------cCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 00112699999999998732 2222222 234678999999999999999988754
No 115
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=133.09 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=99.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc--CEEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR--GAKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~--g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..+|+++|.+|||||||+|+|++.... ..++.|+.+.....+.++ +..+.++||||...... .....++.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 95 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI-------LPYSFIIG 95 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC-------CCGGGTTT
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH-------HHHHHHhc
Confidence 379999999999999999999987544 444555555444555444 46789999999654321 12234688
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|+.++.. .+.+.. ++..+...
T Consensus 96 ~d~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~i~~~------ 124 (201)
T 3oes_A 96 VHGYVLVYSVTSLHS-FQVIES--------------------------------------------LYQKLHEG------ 124 (201)
T ss_dssp CCEEEEEEETTCHHH-HHHHHH--------------------------------------------HHHHHHC-------
T ss_pred CCEEEEEEeCCCHHH-HHHHHH--------------------------------------------HHHHHHHh------
Confidence 999999999987532 111111 11111000
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
. ....+|+++|+||+|+... .+...+. ...+++.+||+++.|++++++.+.+.+.
T Consensus 125 ------------~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 125 ------------H--GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp ------------------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred ------------c--CCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 0112699999999998632 2222221 2246889999999999999999988664
No 116
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=132.56 Aligned_cols=156 Identities=23% Similarity=0.135 Sum_probs=105.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..+|+++|.+|||||||+|+|++........|++|.+.....+.+++. .+.++||||...... .... ..++.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----~~~~--~~~~~ 96 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGG----WLRD--HCLQT 96 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGH----HHHH--HHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchh----hhHH--Hhhcc
Confidence 379999999999999999999987665566788888888888888875 556789999744210 0111 13467
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|..++.. .+.+. .++..+..
T Consensus 97 ~d~~ilv~d~~~~~s-~~~~~--------------------------------------------~~~~~i~~------- 124 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRS-FSKVP--------------------------------------------ETLLRLRA------- 124 (195)
T ss_dssp CSEEEEEEETTCHHH-HHTHH--------------------------------------------HHHHHHHH-------
T ss_pred CCEEEEEEECCCHHH-HHHHH--------------------------------------------HHHHHHHH-------
Confidence 899999999987532 11111 11111100
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.. .....|+|+|+||+|+.. .++...+.. ..+++.+||+++.|++++++.+.+.+.
T Consensus 125 -----------~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 125 -----------GR--PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp -----------HS--TTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -----------hc--CCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 00 001369999999999963 233333322 236789999999999999999988663
No 117
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.61 E-value=2.9e-15 Score=151.53 Aligned_cols=112 Identities=22% Similarity=0.290 Sum_probs=83.7
Q ss_pred cEEEEEcCCCCchHHHHHHHh---cccc-------------cccc------cccceeeeecEEEEEcCEEeeecCccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLT---GTFS-------------EVAS------YEFTTLTCIPGVITYRGAKIQLLDLPGII 123 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~---g~~~-------------~~~~------~~~tT~~~~~g~i~~~g~~i~l~DtpG~~ 123 (381)
++|||+|+.++|||||..+|+ |... .+.+ ..+.|+.+....+.|++..+.++||||..
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 699999999999999999993 3211 1222 35888888888999999999999999998
Q ss_pred ccccCCCcchhhhhcccCCcchhHHHHhcCCC-hHHHHHHHHHHHhcccccccCcCcccceeecccc
Q 016864 124 EGAKDGKGRGRQVISTARTCNCILIVLDAIKP-ITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGG 189 (381)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~-~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~ 189 (381)
++. .+....++-+|..++|||+..+ ..+.+.+...+...++ |..+++++.+|.+
T Consensus 112 DF~-------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~l-----p~i~fINK~Dr~~ 166 (548)
T 3vqt_A 112 DFS-------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRAT-----PVMTFVNKMDREA 166 (548)
T ss_dssp GCS-------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTC-----CEEEEEECTTSCC
T ss_pred HHH-------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCC-----ceEEEEecccchh
Confidence 865 5667778999999999999987 5667777777776666 5556666666644
No 118
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.61 E-value=3.8e-15 Score=125.63 Aligned_cols=152 Identities=20% Similarity=0.135 Sum_probs=99.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++... ...++.|+.+.....+.+++. .+.++||||..+.. ......+..+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 75 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF-VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 75 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHhhccC
Confidence 5899999999999999999997643 344556666655666677664 57889999964422 1112245678
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+..+ +..+
T Consensus 76 ~~~i~v~d~~~~~~-~~~~~~~--------------------------------------------~~~i---------- 100 (166)
T 2ce2_X 76 EGFLCVFAINNTKS-FEDIHQY--------------------------------------------REQI---------- 100 (166)
T ss_dssp SEEEEEEETTCHHH-HHHHHHH--------------------------------------------HHHH----------
T ss_pred CEEEEEEECCCHHH-HHHHHHH--------------------------------------------HHHH----------
Confidence 99999999876532 1111111 1110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
..... ....|+++|+||+|+.. .++...+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 101 --------~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 101 --------KRVKD--SDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp --------HHHHT--CSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred --------HHhcC--CCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 00000 01269999999999874 233333321 24789999999999999999988754
No 119
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.61 E-value=4.3e-15 Score=128.28 Aligned_cols=152 Identities=22% Similarity=0.194 Sum_probs=100.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEE--eeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAK--IQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~--i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++.. ....+..|+.+.....+.+++.. +.++||||...... .....++.+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 90 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI-FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA-------MREQYMRTG 90 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-------SHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH-------HHHHHHhcC
Confidence 699999999999999999999763 33455556655556677777765 45699999654321 112235779
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+..++ ..++.
T Consensus 91 d~~i~v~d~~~~~s-~~~~~~~~----------------------------------------~~~~~------------ 117 (183)
T 3kkq_A 91 DGFLIVYSVTDKAS-FEHVDRFH----------------------------------------QLILR------------ 117 (183)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHH----------------------------------------HHHHH------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH----------------------------------------HHHHH------------
Confidence 99999999987532 11111111 01111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHh--cCCCeeeeccc-ccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILD--KLPHYCPVSAH-LEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~--~~~~~v~vSa~-~~~gl~~L~~~i~~~l 290 (381)
... ....|+++|+||+|+.. .++...+. ...+++.+||+ ++.|++++++.+.+.+
T Consensus 118 ----------~~~--~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 118 ----------VKD--RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp ----------HHT--SSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred ----------hcC--CCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 000 11369999999999864 23333322 12568999999 9999999999988754
No 120
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.61 E-value=1.7e-15 Score=132.10 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=98.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc--CEEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR--GAKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~--g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+..+.+.....+.++ +..+.++||||..... ......++.+
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 96 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR-------TITTAYYRGA 96 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH-------HHHHHHHTTC
T ss_pred eEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH-------HHHHHHHccC
Confidence 799999999999999999999866433222333333344444443 5789999999964432 2223356889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+. .++..+..
T Consensus 97 d~~i~v~d~~~~~s-~~~~~--------------------------------------------~~~~~i~~-------- 123 (191)
T 3dz8_A 97 MGFILMYDITNEES-FNAVQ--------------------------------------------DWATQIKT-------- 123 (191)
T ss_dssp CEEEEEEETTCHHH-HHTHH--------------------------------------------HHHHHHHH--------
T ss_pred CEEEEEEECcCHHH-HHHHH--------------------------------------------HHHHHHHH--------
Confidence 99999999987532 11111 11111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. .....|+++|+||+|+... ++.+.+. ...+++.+||+++.|++++++.+.+.+
T Consensus 124 -----------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 124 -----------Y--SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp -----------H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------h--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 0012699999999998632 2333222 123689999999999999999987754
No 121
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=133.27 Aligned_cols=155 Identities=19% Similarity=0.117 Sum_probs=95.0
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccC
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTAR 141 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 141 (381)
...+|+++|.+|||||||+|+|++........+..+.+.....+.+++ ..+.++||||..... ......++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~ 99 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR-------SIAKSYFR 99 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCH-------HHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchh-------hhHHHHHh
Confidence 348999999999999999999998653322223333334445566665 568999999964421 22223457
Q ss_pred CcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccc
Q 016864 142 TCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADIT 221 (381)
Q Consensus 142 ~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 221 (381)
.+|++++|+|+.++... +.+..++ ..+...
T Consensus 100 ~~d~iilv~d~~~~~s~-~~~~~~~-----------------------------------------~~i~~~-------- 129 (199)
T 2p5s_A 100 KADGVLLLYDVTCEKSF-LNIREWV-----------------------------------------DMIEDA-------- 129 (199)
T ss_dssp HCSEEEEEEETTCHHHH-HTHHHHH-----------------------------------------HHHHHH--------
T ss_pred hCCEEEEEEECCChHHH-HHHHHHH-----------------------------------------HHHHHh--------
Confidence 89999999999875321 1111111 001100
Q ss_pred cccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----------HHHHHHh--cCCCeeeecccccccHHHHHHHHHH
Q 016864 222 LRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----------EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 222 ~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----------~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
.....|+++|+||+|+... ++.+.+. ...+++.+||+++.|++++++.+.+
T Consensus 130 ----------------~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~ 193 (199)
T 2p5s_A 130 ----------------AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193 (199)
T ss_dssp ----------------C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred ----------------cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 0012699999999998621 1222221 1236789999999999999999987
Q ss_pred HcC
Q 016864 289 YLN 291 (381)
Q Consensus 289 ~l~ 291 (381)
.+.
T Consensus 194 ~i~ 196 (199)
T 2p5s_A 194 EVK 196 (199)
T ss_dssp HHT
T ss_pred HHH
Confidence 653
No 122
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.61 E-value=1.6e-15 Score=130.33 Aligned_cols=148 Identities=15% Similarity=0.134 Sum_probs=96.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|++++..... +..|+.+.....+.+++ ..+.++||||... ...++.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~~~~~~~ 73 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD------------AKFSGWA 73 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC------------HHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch------------hHHHHhC
Confidence 689999999999999999999865432 33444444455666776 4578899999643 1234779
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++.. .+.+..++ ..+..+.
T Consensus 74 d~~ilv~D~~~~~s-~~~~~~~~-----------------------------------------~~i~~~~--------- 102 (178)
T 2iwr_A 74 DAVIFVFSLEDENS-FQAVSRLH-----------------------------------------GQLSSLR--------- 102 (178)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH-----------------------------------------HHHHHHH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHH-----------------------------------------HHHHHHH---------
Confidence 99999999987642 11111110 0111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcC-------CHHHHHHHh-c--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQI-------TLEELEILD-K--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~-------~~~~l~~l~-~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.......|+++|+||+|+. ..++...+. . ..+++.+||+++.|++++++.+.+.+
T Consensus 103 ------------~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 103 ------------GEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp ------------CSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ------------hcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 0001136999999999983 233443332 1 24678999999999999999887654
No 123
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.61 E-value=2.6e-15 Score=130.67 Aligned_cols=154 Identities=17% Similarity=0.124 Sum_probs=100.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++........+..+.+.....+.+++ ..+.++||||...... ......++.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~~~~~ 94 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------SMVQHYYRNV 94 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT------TTHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh------hhhHHHhcCC
Confidence 7999999999999999999998665444455556666667777776 5789999999654320 1112235789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++... +.+..++ ..+...
T Consensus 95 d~iilv~D~~~~~s~-~~~~~~~----------------------------------------~~i~~~----------- 122 (189)
T 1z06_A 95 HAVVFVYDMTNMASF-HSLPAWI----------------------------------------EECKQH----------- 122 (189)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHH----------------------------------------HHHHHH-----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHH----------------------------------------HHHHHh-----------
Confidence 999999999875321 1111111 011110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeeccccc---ccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLE---WNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~---~gl~~L~~~i~~~l 290 (381)
+. ....|+++|+||+|+... ++.+.+.. ..+++.+||+++ .|++++++.+.+.+
T Consensus 123 -----------~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 123 -----------LL--ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp -----------CC--CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred -----------cC--CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 00 112699999999998632 33333322 236899999999 99999998886644
No 124
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.61 E-value=1.8e-15 Score=134.17 Aligned_cols=152 Identities=17% Similarity=0.163 Sum_probs=102.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++++++... ...++.|+.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 81 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR-------LRPLSYRGA 81 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---------CGGGTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHhhccCC
Confidence 6999999999999999999997643 35566666666666666665 4789999999754321 111246889
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++..-. .+.. .++..
T Consensus 82 d~~ilv~d~~~~~s~~-~~~~-------------------------------------------~~~~~----------- 106 (212)
T 2j0v_A 82 DIFVLAFSLISKASYE-NVLK-------------------------------------------KWMPE----------- 106 (212)
T ss_dssp SEEEEEEETTCHHHHH-HHHH-------------------------------------------THHHH-----------
T ss_pred CEEEEEEECCCHHHHH-HHHH-------------------------------------------HHHHH-----------
Confidence 9999999998763211 1110 01111
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH-------------HHHHHh---cCCCeeeecccccccHHHHHHHHH
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-------------ELEILD---KLPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-------------~l~~l~---~~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
+.......|+++|+||+|+.... +...+. ...+++.+||+++.|++++++.+.
T Consensus 107 -----------~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 175 (212)
T 2j0v_A 107 -----------LRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175 (212)
T ss_dssp -----------HHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred -----------HHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHH
Confidence 00000126999999999986432 222222 223689999999999999999998
Q ss_pred HHcC
Q 016864 288 EYLN 291 (381)
Q Consensus 288 ~~l~ 291 (381)
+.+.
T Consensus 176 ~~~~ 179 (212)
T 2j0v_A 176 KVVL 179 (212)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8653
No 125
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.60 E-value=1.8e-15 Score=131.90 Aligned_cols=154 Identities=15% Similarity=0.032 Sum_probs=95.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccce------eeeecEE------E-EE--cCEEeeecCcccccccccCCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTT------LTCIPGV------I-TY--RGAKIQLLDLPGIIEGAKDGK 130 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT------~~~~~g~------i-~~--~g~~i~l~DtpG~~~~~~~~~ 130 (381)
.+|+++|.+|||||||++.|.|..... +..++ ..++.|. + .+ .+..+.++||||.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~~--~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPEG--RKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCGG--GBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcccc--ccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 699999999999999999998865432 11110 1112221 1 11 23578999999965432
Q ss_pred cchhhhhcccCCcchhHHHHhcCCChHHH-HHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHH
Q 016864 131 GRGRQVISTARTCNCILIVLDAIKPITHK-RLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAI 209 (381)
Q Consensus 131 ~~~~~~~~~~~~~d~il~vvd~~~~~~~~-~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~ 209 (381)
......++.+|++++|+|++++.... .... +.+..+
T Consensus 89 ---~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~----------------------------------------~~l~~~ 125 (198)
T 3t1o_A 89 ---ASRKLILRGVDGIVFVADSAPNRLRANAESM----------------------------------------RNMREN 125 (198)
T ss_dssp ---HHHHHHTTTCCEEEEEEECCGGGHHHHHHHH----------------------------------------HHHHHH
T ss_pred ---HHHHHHHhcCCEEEEEEECCcchhhHhHHHH----------------------------------------HHHHHH
Confidence 12223568999999999998652111 0000 112222
Q ss_pred HHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCC---HHHHHHHhc---CCCeeeecccccccHHHHH
Q 016864 210 CSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQIT---LEELEILDK---LPHYCPVSAHLEWNLDGLL 283 (381)
Q Consensus 210 l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~---~~~l~~l~~---~~~~v~vSa~~~~gl~~L~ 283 (381)
+..+. ......|+++|+||+|+.. .+++..+.. ..+++.+||+++.|+++++
T Consensus 126 l~~~~----------------------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 183 (198)
T 3t1o_A 126 LAEYG----------------------LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETL 183 (198)
T ss_dssp HHHTT----------------------CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHH
T ss_pred HHhhc----------------------cccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHH
Confidence 22221 0111379999999999864 344444332 2268999999999999999
Q ss_pred HHHHHHc
Q 016864 284 EKIWEYL 290 (381)
Q Consensus 284 ~~i~~~l 290 (381)
+.+.+.+
T Consensus 184 ~~l~~~i 190 (198)
T 3t1o_A 184 KEVSRLV 190 (198)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987754
No 126
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.9e-15 Score=142.47 Aligned_cols=152 Identities=18% Similarity=0.090 Sum_probs=100.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
..+|+++|.+|||||||+++|++... +..+| |++.....+.+.+..+.++||||..... ......++.+|
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ad 234 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQ 234 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETTEEEEEEECC-----C-------CSHHHHHTTEE
T ss_pred cceEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCcEEEEEEECCCCHhHH-------HHHHHHhccCC
Confidence 36999999999999999999987653 23333 7777777888889999999999954322 11222457899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|+.++..- +.+...+ ..++...
T Consensus 235 ~vilV~D~~~~~s~-~~~~~~~----------------------------------------~~~~~~~----------- 262 (329)
T 3o47_A 235 GLIFVVDSNDRERV-NEAREEL----------------------------------------MRMLAED----------- 262 (329)
T ss_dssp EEEEEEETTCSSSH-HHHHHHH----------------------------------------HHHHTCG-----------
T ss_pred EEEEEEECCchHHH-HHHHHHH----------------------------------------HHHHhhh-----------
Confidence 99999999775321 1111110 0111000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH---HHHHHHhcC-------CCeeeecccccccHHHHHHHHHHHcC
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL---EELEILDKL-------PHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~---~~l~~l~~~-------~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
....+|+|+|+||+|+... +++...... .+++.+||+++.|+++|++.+.+.+.
T Consensus 263 -------------~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 263 -------------ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp -------------GGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred -------------ccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 0113699999999999753 233221111 24789999999999999999988764
No 127
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.59 E-value=5.6e-15 Score=128.05 Aligned_cols=83 Identities=18% Similarity=0.214 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++.... ..+..|+.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 79 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-------VRPLSYPDS 79 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT-------TGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh-------hHHhhcCCC
Confidence 69999999999999999999986533 3333444333334455554 5788999999754321 112245889
Q ss_pred chhHHHHhcCCCh
Q 016864 144 NCILIVLDAIKPI 156 (381)
Q Consensus 144 d~il~vvd~~~~~ 156 (381)
|++++|+|++++.
T Consensus 80 ~~~i~v~d~~~~~ 92 (184)
T 1m7b_A 80 DAVLICFDISRPE 92 (184)
T ss_dssp SEEEEEEETTCHH
T ss_pred cEEEEEEECCCHH
Confidence 9999999998753
No 128
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.59 E-value=2.7e-16 Score=157.88 Aligned_cols=151 Identities=23% Similarity=0.242 Sum_probs=108.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEE-cCEEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITY-RGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~-~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.++|+++|++|+|||||+++|++........+++|.+.....+.+ ++..+.++||||..... ......+..+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~-------~~~~~~~~~a 76 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS-------AMRARGTQVT 76 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT-------TSBBSSSBSB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH-------HHHHHHHccC
Confidence 378999999999999999999988766667889999988877776 57789999999965432 2233356789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++..... . ..+..
T Consensus 77 D~vILVVDa~dg~~~qt-~---------------------------------------------e~l~~----------- 99 (537)
T 3izy_P 77 DIVILVVAADDGVMKQT-V---------------------------------------------ESIQH----------- 99 (537)
T ss_dssp SSCEEECBSSSCCCHHH-H---------------------------------------------HHHHH-----------
T ss_pred CEEEEEEECCCCccHHH-H---------------------------------------------HHHHH-----------
Confidence 99999999987532110 0 00000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHH------HHHHHh----cC---CCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLE------ELEILD----KL---PHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~------~l~~l~----~~---~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
+.. ...|+|+|+||+|+.... ++.... .+ .+++++||++|.|+++|++.+...+
T Consensus 100 -----------~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 100 -----------AKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp -----------HHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred -----------HHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 000 126999999999997421 222221 11 2578999999999999999998876
Q ss_pred CC
Q 016864 291 NL 292 (381)
Q Consensus 291 ~~ 292 (381)
..
T Consensus 167 ~~ 168 (537)
T 3izy_P 167 EM 168 (537)
T ss_dssp TT
T ss_pred hc
Confidence 53
No 129
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.59 E-value=6e-15 Score=139.01 Aligned_cols=89 Identities=15% Similarity=0.099 Sum_probs=68.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc-ccccccccceeeeecEEEEE-cCEEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF-SEVASYEFTTLTCIPGVITY-RGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~-~~~~~~~~tT~~~~~g~i~~-~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|++++.. ...++++++|++...+.+.+ ++..+.++||||.......- ........++.+
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~~a 81 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENY--FTKQKDHIFQMV 81 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHH--HTTTHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhh--hhhHHHHHhccC
Confidence 699999999999999999988764 45678999999999998887 56899999999975431000 001112234789
Q ss_pred chhHHHHhcCCCh
Q 016864 144 NCILIVLDAIKPI 156 (381)
Q Consensus 144 d~il~vvd~~~~~ 156 (381)
|++++|+|+.++.
T Consensus 82 d~vi~V~D~t~~~ 94 (307)
T 3r7w_A 82 QVLIHVFDVESTE 94 (307)
T ss_dssp SEEEEEEETTCSC
T ss_pred CEEEEEEECCChh
Confidence 9999999998863
No 130
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.59 E-value=7.2e-16 Score=135.77 Aligned_cols=155 Identities=19% Similarity=0.151 Sum_probs=70.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccce-eeeecEEEEEcC----EEeeecCcccccccccCCCcchhhhhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTT-LTCIPGVITYRG----AKIQLLDLPGIIEGAKDGKGRGRQVIST 139 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT-~~~~~g~i~~~g----~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 139 (381)
.+|+++|.+|||||||+|+|++... ....++.|+ .+.....+.+++ ..+.++||||..... ......
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~ 93 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK-------EQISQY 93 (208)
T ss_dssp EEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH-------HHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH-------HHHHHH
Confidence 6999999999999999999998732 234555555 367777788874 578999999985432 223335
Q ss_pred cCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCc
Q 016864 140 ARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNAD 219 (381)
Q Consensus 140 ~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~ 219 (381)
++.+|++++|+|++++.. .+.+.. ++..+..
T Consensus 94 ~~~~d~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~i~~---- 124 (208)
T 2yc2_C 94 WNGVYYAILVFDVSSMES-FESCKA--------------------------------------------WFELLKS---- 124 (208)
T ss_dssp CCCCCEEEEEEETTCHHH-HHHHHH--------------------------------------------HHHHHHH----
T ss_pred HhhCcEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHHHH----
Confidence 688999999999987642 111111 1111100
Q ss_pred cccccCCChhHHHHHHhcccccccEEEEEecCCcCC-H-----HHHHHHh-c-CCCeeeecccc-cccHHHHHHHHHHHc
Q 016864 220 ITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQIT-L-----EELEILD-K-LPHYCPVSAHL-EWNLDGLLEKIWEYL 290 (381)
Q Consensus 220 ~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-~-----~~l~~l~-~-~~~~v~vSa~~-~~gl~~L~~~i~~~l 290 (381)
.........|+++|+||+|+.. . ++...+. . ..+++.+||++ +.|++++++.+.+.+
T Consensus 125 --------------~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 125 --------------ARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp --------------HCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHH
T ss_pred --------------hhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 0000001369999999999975 2 3333332 2 23678999999 999999999887754
No 131
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.59 E-value=9.9e-15 Score=130.02 Aligned_cols=153 Identities=16% Similarity=0.109 Sum_probs=99.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..+|+++|.+|||||||+++|++.... ..+..|+.+.....+.+++ ..+.++||||...... .....++.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 98 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN-------VRPLCYSD 98 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT-------TGGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH-------HHHHHcCC
Confidence 379999999999999999999886533 4444454444444444444 5788999999754321 12224688
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|+.++..-...+.. ++..+
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~--------------------------------------------~~~~i--------- 125 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKK--------------------------------------------WRTEI--------- 125 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTH--------------------------------------------HHHHH---------
T ss_pred CeEEEEEEECcCHHHHHHHHHH--------------------------------------------HHHHH---------
Confidence 9999999999886432111111 11110
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCC-----------------HHHHHHHh---cCCCeeeeccccccc-HHH
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----------------LEELEILD---KLPHYCPVSAHLEWN-LDG 281 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----------------~~~l~~l~---~~~~~v~vSa~~~~g-l~~ 281 (381)
.......|+++|+||+|+.. .++...+. ...+++.+||+++.| +++
T Consensus 126 -------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~ 192 (214)
T 3q3j_B 126 -------------LDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHS 192 (214)
T ss_dssp -------------HHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHH
T ss_pred -------------HHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHH
Confidence 00011269999999999863 22222221 223678999999998 999
Q ss_pred HHHHHHHHcC
Q 016864 282 LLEKIWEYLN 291 (381)
Q Consensus 282 L~~~i~~~l~ 291 (381)
+++.+.+.+.
T Consensus 193 lf~~l~~~~~ 202 (214)
T 3q3j_B 193 IFRTASMLCL 202 (214)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 132
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.58 E-value=2.9e-15 Score=132.98 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEc---CEEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYR---GAKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~---g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.+|+++|.+|||||||+++|++.. ....++.++.+ ...+.++ +..+.++||||...... ......++.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~~~~~~~~ 78 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ-YRDTQTSITDS--SAIYKVNNNRGNSLTLIDLPGHESLRF------QLLDRFKSS 78 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC-CCCBCCCCSCE--EEEEECSSTTCCEEEEEECCCCHHHHH------HHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-cccccCCccee--eEEEEecCCCccEEEEEECCCChhHHH------HHHHHHHhh
Confidence 799999999999999999999865 33455544433 3346666 57899999999764321 011123688
Q ss_pred cchhHHHHhcCCC
Q 016864 143 CNCILIVLDAIKP 155 (381)
Q Consensus 143 ~d~il~vvd~~~~ 155 (381)
+|++++|+|+.+.
T Consensus 79 ~~~~i~v~d~~~~ 91 (214)
T 2fh5_B 79 ARAVVFVVDSAAF 91 (214)
T ss_dssp EEEEEEEEETTTH
T ss_pred CCEEEEEEECCCc
Confidence 9999999999763
No 133
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.1e-15 Score=156.53 Aligned_cols=84 Identities=18% Similarity=0.211 Sum_probs=69.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccc-------------------------------cccceeeeecEEEEEcCEE
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVAS-------------------------------YEFTTLTCIPGVITYRGAK 113 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~-------------------------------~~~tT~~~~~g~i~~~g~~ 113 (381)
..+|+++|++|+|||||+|+|++....+.. .+|+|++.....+.+.+..
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 246 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 246 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCE
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCce
Confidence 479999999999999999999876433322 3689999999999999999
Q ss_pred eeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 114 IQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 114 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
+.++||||+... ...+...+..+|++++|+|+..+
T Consensus 247 ~~iiDTPG~e~f-------~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 247 FTIVDAPGHRDF-------VPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp EEEEECCSSSCH-------HHHHTTTSSCCSEEEEEEECSHH
T ss_pred EEEEECCCCccc-------HHHHHHHHhhcCceEEEEECCCC
Confidence 999999998553 35566677899999999999764
No 134
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=7e-15 Score=125.01 Aligned_cols=154 Identities=20% Similarity=0.195 Sum_probs=94.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+|+|++...... +..|+-......+..++ ..+.++||||..+.. ......++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 75 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRES-YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP-------AMQRLSISKG 75 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSS-CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCccccEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHhcccC
Confidence 6899999999999999999998653322 22222222223344444 468999999965432 1122235678
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++... +.+...+ ..+..+
T Consensus 76 ~~~i~v~d~~~~~~~-~~~~~~~-----------------------------------------~~i~~~---------- 103 (172)
T 2erx_A 76 HAFILVYSITSRQSL-EELKPIY-----------------------------------------EQICEI---------- 103 (172)
T ss_dssp SEEEEEEETTCHHHH-HTTHHHH-----------------------------------------HHHHHH----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHH-----------------------------------------HHHHHH----------
Confidence 999999999875321 1111100 001100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.......|+++|+||+|+... .+...+. ...+++.+||+++.|++++++.+.+.+.
T Consensus 104 ------------~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 104 ------------KGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp ------------HC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ------------hCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 000012699999999998642 2222221 1236789999999999999999998664
No 135
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.58 E-value=9.9e-15 Score=127.06 Aligned_cols=153 Identities=14% Similarity=0.055 Sum_probs=98.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|++++.. ....+..|+.+.....+.+++ ..+.++||||...... ....++.+
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~ 92 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR-FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN--------CERYLNWA 92 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC--------THHHHTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC-CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh--------HHHHHhhC
Confidence 799999999999999999999865 335566666655555566665 4677899999754321 12245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|..++.. .+.+..++ ..+
T Consensus 93 ~~~ilv~d~~~~~s-~~~~~~~~--------------------------------------------~~i---------- 117 (187)
T 3c5c_A 93 HAFLVVYSVDSRQS-FDSSSSYL--------------------------------------------ELL---------- 117 (187)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHH--------------------------------------------HHH----------
T ss_pred CEEEEEEECCCHHH-HHHHHHHH--------------------------------------------HHH----------
Confidence 99999999986532 11111111 110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecc-cccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSA-HLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa-~~~~gl~~L~~~i~~~l 290 (381)
...........|+++|+||+|+.. .++...+.. ..+++.+|| +++.|++++++.+.+.+
T Consensus 118 --------~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 118 --------ALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp --------HHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred --------HHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 000000001369999999999863 233333221 236889999 89999999999988754
No 136
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.58 E-value=7e-15 Score=127.82 Aligned_cols=146 Identities=16% Similarity=0.102 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|.+++..... .+.. |.+.....+.+++. .+.++||||.... . .++.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~---~~~~~ 86 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQ-EESP-EGGRFKKEIVVDGQSYLLLIRDEGGPPEL---------Q---FAAWV 86 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCC-CCCT-TCEEEEEEEEETTEEEEEEEEECSSSCCH---------H---HHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CcCC-CcceEEEEEEECCEEEEEEEEECCCChhh---------h---eecCC
Confidence 799999999999999999998765332 2222 33334456778774 5667999996432 1 34678
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|++++.. .+.+. .++..+....
T Consensus 87 ~~~i~v~d~~~~~s-~~~~~--------------------------------------------~~~~~i~~~~------ 115 (184)
T 3ihw_A 87 DAVVFVFSLEDEIS-FQTVY--------------------------------------------NYFLRLCSFR------ 115 (184)
T ss_dssp SEEEEEEETTCHHH-HHHHH--------------------------------------------HHHHHHHTTS------
T ss_pred CEEEEEEECcCHHH-HHHHH--------------------------------------------HHHHHHHHhc------
Confidence 99999999987532 11111 1111110000
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcC-------CHHHHHHHh-c--CCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQI-------TLEELEILD-K--LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~-------~~~~l~~l~-~--~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.....|+++|.||+|+. ..++...+. . ..+++.+||+++.|++++++.+.+.+
T Consensus 116 --------------~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 116 --------------NASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp --------------CGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred --------------CCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 00136999999999983 233343332 2 24678999999999999999987754
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.57 E-value=4.3e-15 Score=145.26 Aligned_cols=150 Identities=26% Similarity=0.299 Sum_probs=98.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc-ccccccceeee--------------e-----cEEEEEcCEEeeecCcccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE-VASYEFTTLTC--------------I-----PGVITYRGAKIQLLDLPGIIE 124 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~-~~~~~~tT~~~--------------~-----~g~i~~~g~~i~l~DtpG~~~ 124 (381)
..+|+++|++|+|||||+|+|+|.... ...++.+|... . .+........+.++||||...
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~ 87 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV 87 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH
Confidence 479999999999999999999985421 12222222211 0 000011226889999999654
Q ss_pred cccCCCcchhhhhcccCCcchhHHHHhcCCCh--HHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCC
Q 016864 125 GAKDGKGRGRQVISTARTCNCILIVLDAIKPI--THKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLD 202 (381)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~--~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~ 202 (381)
. ...+...+..+|++++|+|+.++. .+......
T Consensus 88 ~-------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~-------------------------------------- 122 (403)
T 3sjy_A 88 L-------MATMLSGAALMDGAILVVAANEPFPQPQTREHFV-------------------------------------- 122 (403)
T ss_dssp G-------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHH--------------------------------------
T ss_pred H-------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHH--------------------------------------
Confidence 3 245555678999999999998763 11111111
Q ss_pred HHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH----HHh--------cCCCeee
Q 016864 203 LDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE----ILD--------KLPHYCP 270 (381)
Q Consensus 203 ~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~----~l~--------~~~~~v~ 270 (381)
++..++ .+|+|+|+||+|+.+.++.. .+. ...++++
T Consensus 123 ------~~~~~~--------------------------~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~ 170 (403)
T 3sjy_A 123 ------ALGIIG--------------------------VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIP 170 (403)
T ss_dssp ------HHHHHT--------------------------CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEE
T ss_pred ------HHHHcC--------------------------CCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 111111 14899999999998765431 221 1346999
Q ss_pred ecccccccHHHHHHHHHHHcC
Q 016864 271 VSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 271 vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+||+++.|+++|++.+.+.++
T Consensus 171 vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 171 VSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp CBTTTTBSHHHHHHHHHHHSC
T ss_pred EECCCCcChHHHHHHHHHhCC
Confidence 999999999999999988664
No 138
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.57 E-value=9.8e-15 Score=129.28 Aligned_cols=83 Identities=18% Similarity=0.214 Sum_probs=58.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|+|++.... ..+..|+.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 100 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-------VRPLSYPDS 100 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT-------TGGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH-------HHHhhccCC
Confidence 69999999999999999999986543 3333444333334455554 5789999999754321 112245889
Q ss_pred chhHHHHhcCCCh
Q 016864 144 NCILIVLDAIKPI 156 (381)
Q Consensus 144 d~il~vvd~~~~~ 156 (381)
|++++|+|+.++.
T Consensus 101 d~~ilv~D~~~~~ 113 (205)
T 1gwn_A 101 DAVLICFDISRPE 113 (205)
T ss_dssp SEEEEEEETTCHH
T ss_pred CEEEEEEECCCHH
Confidence 9999999998753
No 139
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.57 E-value=5.8e-15 Score=131.44 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=93.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccccccccccee-eeecEEEEEc-C--EEeeecCcccccccccCCCcchhhhhcccC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTL-TCIPGVITYR-G--AKIQLLDLPGIIEGAKDGKGRGRQVISTAR 141 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~-~~~~g~i~~~-g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 141 (381)
.+|+++|.+|||||||+|+|++.... ..+..|+. +.....+... + ..+.++||||...... .....+.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~ 83 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV-------LKDVYYI 83 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC-------CCHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch-------HHHHHhh
Confidence 79999999999999999999976533 22222211 1111222222 2 6789999999754321 1112357
Q ss_pred CcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccc
Q 016864 142 TCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADIT 221 (381)
Q Consensus 142 ~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~ 221 (381)
.+|++++|+|+.++... +.+. .++..+
T Consensus 84 ~~d~~i~v~d~~~~~s~-~~~~--------------------------------------------~~~~~~-------- 110 (218)
T 4djt_A 84 GASGAILFFDVTSRITC-QNLA--------------------------------------------RWVKEF-------- 110 (218)
T ss_dssp TCSEEEEEEETTCHHHH-HTHH--------------------------------------------HHHHHH--------
T ss_pred cCCEEEEEEeCCCHHHH-HHHH--------------------------------------------HHHHHH--------
Confidence 89999999999876321 1111 111110
Q ss_pred cccCCChhHHHHHHhcccccccEEEEEecCCcCCHH-----HHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 222 LRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-----ELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 222 ~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-----~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.... ....|+++|+||+|+.... ....+.. ..+++.+||+++.|++++++.+.+.+.
T Consensus 111 ----------~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 111 ----------QAVV---GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp ----------HHHH---CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred ----------HHhc---CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHh
Confidence 0000 0126999999999987542 2223322 235899999999999999999988653
No 140
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.57 E-value=3e-15 Score=147.82 Aligned_cols=85 Identities=20% Similarity=0.179 Sum_probs=67.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccc-------------------------------cccccceeeeecEEEEEcCEE
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEV-------------------------------ASYEFTTLTCIPGVITYRGAK 113 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~-------------------------------~~~~~tT~~~~~g~i~~~g~~ 113 (381)
..+|+++|++|+|||||+++|++....+ ...+++|++.....+.+++..
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~ 96 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKH 96 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeE
Confidence 3799999999999999999995542111 113688999988889999999
Q ss_pred eeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCCh
Q 016864 114 IQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPI 156 (381)
Q Consensus 114 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~ 156 (381)
+.++||||..+.. ..+...+..+|++++|+|+.++.
T Consensus 97 ~~iiDTPGh~~f~-------~~~~~~~~~aD~~ilVVDa~~g~ 132 (439)
T 3j2k_7 97 FTILDAPGHKSFV-------PNMIGGASQADLAVLVISARKGE 132 (439)
T ss_pred EEEEECCChHHHH-------HHHHhhHhhCCEEEEEEECCCCc
Confidence 9999999986542 45555678899999999998753
No 141
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.57 E-value=7.4e-16 Score=137.74 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=99.0
Q ss_pred cEEEEEcCCCCchHHHHHHH-hcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKL-TGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L-~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||+|++ .|... ...+.+++|.......+...+..+.++||||...... .....++.+
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 88 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG-------LRDGYYIQA 88 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC-------CCHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH-------HHHHHHhcC
Confidence 69999999999999999994 44433 3356667777666554443456889999999644321 112245789
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
|++++|+|+.++... +.+.. ++..+
T Consensus 89 ~~~i~v~d~~~~~s~-~~~~~--------------------------------------------~~~~~---------- 113 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTY-KNVPN--------------------------------------------WHRDL---------- 113 (221)
T ss_dssp CEEEEEEETTCHHHH-HTHHH--------------------------------------------HHHHH----------
T ss_pred CEEEEEEECCCHHHH-HHHHH--------------------------------------------HHHHH----------
Confidence 999999999875321 11111 11110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCCHHH---HHHH--hcCCCeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE---LEIL--DKLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~---l~~l--~~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.......|+++|+||+|+..... ...+ ....+++.+||+++.|++++++.+.+.+
T Consensus 114 ------------~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 114 ------------VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp ------------HHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred ------------HHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00001269999999999874321 1111 1234689999999999999999988765
No 142
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.57 E-value=9.8e-15 Score=143.02 Aligned_cols=149 Identities=21% Similarity=0.249 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc---cccccccceeeeecEEEEEc-----------------------CEEeeecCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS---EVASYEFTTLTCIPGVITYR-----------------------GAKIQLLDL 119 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~---~~~~~~~tT~~~~~g~i~~~-----------------------g~~i~l~Dt 119 (381)
.+|+++|++|+|||||+++|+|... .....+++|++.......+. ...+.++||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 6899999999999999999998642 22334678887655544431 167999999
Q ss_pred ccccccccCCCcchhhhhcccCCcchhHHHHhcCCCh--HHHHHHHHHHHhcccccccCcCcccceeeccccceeeeccc
Q 016864 120 PGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPI--THKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVT 197 (381)
Q Consensus 120 pG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~--~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~ 197 (381)
||..+.. ..+...+..+|++++|+|+.++. .+......
T Consensus 91 PGh~~f~-------~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~--------------------------------- 130 (410)
T 1kk1_A 91 PGHEALM-------TTMLAGASLMDGAILVIAANEPCPRPQTREHLM--------------------------------- 130 (410)
T ss_dssp SSHHHHH-------HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH---------------------------------
T ss_pred CChHHHH-------HHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH---------------------------------
Confidence 9986532 44555667889999999998652 11111111
Q ss_pred CCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH----HHH----h----cC
Q 016864 198 NTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL----EIL----D----KL 265 (381)
Q Consensus 198 ~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~l----~----~~ 265 (381)
++..++ ..|+|+|+||+|+...++. +.+ . ..
T Consensus 131 -----------~~~~~~--------------------------~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~ 173 (410)
T 1kk1_A 131 -----------ALQIIG--------------------------QKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAEN 173 (410)
T ss_dssp -----------HHHHHT--------------------------CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTT
T ss_pred -----------HHHHcC--------------------------CCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCC
Confidence 111111 1489999999999875431 221 1 23
Q ss_pred CCeeeecccccccHHHHHHHHHHHcC
Q 016864 266 PHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 266 ~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.+++++||+++.|+++|++.+.+.++
T Consensus 174 ~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 174 APIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 47899999999999999999988765
No 143
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.2e-14 Score=127.29 Aligned_cols=152 Identities=18% Similarity=0.124 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..+|+++|.+|||||||+|+|++.... ..+..|+.+.....+.+++ ..+.++||||... . ......++.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~-------~~~~~~~~~ 98 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFI-WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-T-------IQREGHMRW 98 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-C-------HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-c-------cchhhhhcc
Confidence 379999999999999999999986532 3344444444445566665 5688999999765 1 122234578
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|++++.. .+.+.. ++..+
T Consensus 99 ~d~iilv~D~~~~~s-~~~~~~--------------------------------------------~~~~i--------- 124 (196)
T 2atv_A 99 GEGFVLVYDITDRGS-FEEVLP--------------------------------------------LKNIL--------- 124 (196)
T ss_dssp CSEEEEEEETTCHHH-HHTHHH--------------------------------------------HHHHH---------
T ss_pred CCEEEEEEECcCHHH-HHHHHH--------------------------------------------HHHHH---------
Confidence 899999999987532 111111 11100
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccc-cHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEW-NLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~-gl~~L~~~i~~~l 290 (381)
..... ....|+++|+||+|+... ++...+. ...+++.+||+++. |++++++.+.+.+
T Consensus 125 ---------~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 125 ---------DEIKK--PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp ---------HHHHT--TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred ---------HHhhC--CCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 00000 112699999999998642 3333322 12468899999999 9999999987754
No 144
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.56 E-value=2.9e-15 Score=129.98 Aligned_cols=54 Identities=28% Similarity=0.381 Sum_probs=44.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGII 123 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~ 123 (381)
.+|+++|.+|||||||+|+|++.....+..|++|.++... .++ .+.++||||+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~ 55 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK--NHKIIDMPGFG 55 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET--TEEEEECCCBS
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ecC--CEEEEECCCcc
Confidence 5899999999999999999999877777788888766543 333 78899999964
No 145
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.56 E-value=3.3e-15 Score=138.45 Aligned_cols=60 Identities=28% Similarity=0.319 Sum_probs=38.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccc------cceeeeecE--EEEEcC--EEeeecCccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYE------FTTLTCIPG--VITYRG--AKIQLLDLPGIIEG 125 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~------~tT~~~~~g--~i~~~g--~~i~l~DtpG~~~~ 125 (381)
.+|+++|.+|+|||||+|+|++......++| ..|++.... .+.++| ..+.++||||+.+.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 6899999999999999999998876655542 444444333 344445 38999999998543
No 146
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=1.6e-14 Score=126.21 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=96.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..+|+++|.+|||||||+|+|++..... .+..|+-+.....+.+++ ..+.++||||..... ......++.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 79 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------AMQRLSISK 79 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-------HHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCC-cccCccccceeEEEEECCEEEEEEEEeCCChHHhH-------HHHHHhhcc
Confidence 4799999999999999999999864332 122222222223344444 478899999965432 112223577
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|++++... +.+..++ ..+..+
T Consensus 80 ~d~~i~v~d~~~~~s~-~~~~~~~-----------------------------------------~~i~~~--------- 108 (199)
T 2gf0_A 80 GHAFILVFSVTSKQSL-EELGPIY-----------------------------------------KLIVQI--------- 108 (199)
T ss_dssp CSEEEEEEETTCHHHH-HTTHHHH-----------------------------------------HHHHHH---------
T ss_pred CCEEEEEEECcCHHHH-HHHHHHH-----------------------------------------HHHHHH---------
Confidence 8999999999875321 1100000 001110
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH----HHHHHHh-c-CCCeeeecccccccHHHHHHHHHHHcCC
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL----EELEILD-K-LPHYCPVSAHLEWNLDGLLEKIWEYLNL 292 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~----~~l~~l~-~-~~~~v~vSa~~~~gl~~L~~~i~~~l~~ 292 (381)
.......|+++|+||+|+... ++...+. . ..+++.+||+++.|++++++.+.+.+..
T Consensus 109 -------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 109 -------------KGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp -------------HSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred -------------hcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 000113699999999998742 2222222 1 2368899999999999999999987753
No 147
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.55 E-value=3.8e-14 Score=135.32 Aligned_cols=142 Identities=18% Similarity=0.139 Sum_probs=103.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+||||||||||+++|+|...+ ..|.+.++|..+.-.++ ........+++..|.
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~G~~i~~~~~--~~~~~~r~ig~vfQ~ 88 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP-----------DSGEISLSGKTIFSKNT--NLPVRERRLGYLVQE 88 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEEEESSSC--BCCGGGSCCEEECTT
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC-----------CCcEEEECCEECccccc--ccchhhCCEEEEeCC
Confidence 34444444589999999999999999999999888 89999999988732111 111122345555665
Q ss_pred hcccCCcchhHHHHhcC-----CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIVLDAI-----KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~-----~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
...++..++.-.+.-.. ......+.+.+.++.+++ ..++++..||+|++||..++ +.+|||+++
T Consensus 89 ~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~ 168 (359)
T 3fvq_A 89 GVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSA 168 (359)
T ss_dssp CCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 55566666655443221 123445678888999998 67889999999999999887 888999999
Q ss_pred CCHHHHHHHHH
Q 016864 201 LDLDTVKAICS 211 (381)
Q Consensus 201 l~~~~v~~~l~ 211 (381)
+|......++.
T Consensus 169 LD~~~r~~l~~ 179 (359)
T 3fvq_A 169 LDEQLRRQIRE 179 (359)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99987766654
No 148
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.55 E-value=6.8e-15 Score=143.94 Aligned_cols=83 Identities=20% Similarity=0.197 Sum_probs=63.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc-----------------cccccceeeeecEEEEEcCEEeeecCcccccccccC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV-----------------ASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKD 128 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~-----------------~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~ 128 (381)
.+|+++|++|+|||||+++|++..... ...+++|++.....+.+++..+.++||||+.+..
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~-- 89 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI-- 89 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH--
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH--
Confidence 799999999999999999998841100 1145778877665666667899999999986532
Q ss_pred CCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 129 GKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 129 ~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
..+...+..+|++++|+|+.++
T Consensus 90 -----~~~~~~~~~aD~~ilVvda~~g 111 (405)
T 2c78_A 90 -----KNMITGAAQMDGAILVVSAADG 111 (405)
T ss_dssp -----HHHHHHHTTCSSEEEEEETTTC
T ss_pred -----HHHHHHHHHCCEEEEEEECCCC
Confidence 4455567899999999999876
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.55 E-value=3.7e-15 Score=149.05 Aligned_cols=83 Identities=17% Similarity=0.205 Sum_probs=65.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-------------------------------cccccccceeeeecEEEEEcCEEe
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-------------------------------EVASYEFTTLTCIPGVITYRGAKI 114 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-------------------------------~~~~~~~tT~~~~~g~i~~~g~~i 114 (381)
.+|+++|.+|+|||||+|+|++... .....+++|++.....+.+.+..+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~ 113 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 113 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceE
Confidence 7999999999999999999976521 112345889988888888888999
Q ss_pred eecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 115 QLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 115 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.++||||..+. ...+...+..+|++++|+|+.++
T Consensus 114 ~iiDTPG~~~f-------~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 114 TIVDAPGHRDF-------VPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEECCCCCGGG-------HHHHHHHHTTCSEEEEEEECCC-
T ss_pred EEEECCCcHHH-------HHHHHHhhhhCCEEEEEEECCCC
Confidence 99999998653 24555667899999999999875
No 150
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.55 E-value=1.4e-14 Score=127.27 Aligned_cols=152 Identities=24% Similarity=0.204 Sum_probs=99.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|++|||||||+++|+|........|..+.++..|.+.++|. .+.++||||....... .....+.+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~-------~~~~~~~~ 78 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI-------TSAYYRGA 78 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC-------CHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhh-------hHHHHhcC
Confidence 68999999999999999999998765555566667888899999885 5567999996543211 11123578
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
+++++|+|..++.. .+.+. .++..+.
T Consensus 79 ~~~i~v~d~~~~~s-~~~~~--------------------------------------------~~~~~~~--------- 104 (199)
T 2f9l_A 79 VGALLVYDIAKHLT-YENVE--------------------------------------------RWLKELR--------- 104 (199)
T ss_dssp SEEEEEEETTCHHH-HHTHH--------------------------------------------HHHHHHH---------
T ss_pred CEEEEEEECcCHHH-HHHHH--------------------------------------------HHHHHHH---------
Confidence 88889999876532 11111 1111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhcCC--CeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDKLP--HYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~~~--~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. . .....|+++|+||+|+.. .++...+...+ .++.+||+++.|++++++.+.+.+
T Consensus 105 ---------~-~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 105 ---------D-H--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp ---------H-H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0 001269999999999863 23333343322 356799999999999999887655
No 151
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.55 E-value=1.5e-14 Score=129.99 Aligned_cols=143 Identities=18% Similarity=0.191 Sum_probs=88.1
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||||||||+++|+|...| ..|.+.++|.++.-.+............++..|..
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 91 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP-----------TEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFH 91 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC-----------SEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCCCCHHHHHHHHhCcEEEEecCc
Confidence 3444444489999999999999999999999887 88999999987642211000000001111222222
Q ss_pred cccCCcch---hHHHHhcCC-C-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 138 STARTCNC---ILIVLDAIK-P-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 138 ~~~~~~d~---il~vvd~~~-~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
......++ +.+...... + ....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++
T Consensus 92 ~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 171 (224)
T 2pcj_A 92 YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNL 171 (224)
T ss_dssp CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTC
T ss_pred ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 22222233 222111111 1 2334567888899998 56788999999999997776 6667777777
Q ss_pred CHHHHHHHHH
Q 016864 202 DLDTVKAICS 211 (381)
Q Consensus 202 ~~~~v~~~l~ 211 (381)
|......+++
T Consensus 172 D~~~~~~~~~ 181 (224)
T 2pcj_A 172 DSANTKRVMD 181 (224)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7765554433
No 152
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.55 E-value=8.3e-15 Score=132.66 Aligned_cols=145 Identities=17% Similarity=0.101 Sum_probs=95.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+............++..|.
T Consensus 23 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~ 91 (235)
T 3tif_A 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-----------TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91 (235)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTT
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CceEEEECCEEcccCCHHHHHHHhhccEEEEecC
Confidence 34444445589999999999999999999999888 8999999998764322111000000112222232
Q ss_pred hcccCCcchhHHHH---hc-----CCChHHHHHHHHHHHhccc-c--cccCcCcccceeeccccce---------eeecc
Q 016864 137 ISTARTCNCILIVL---DA-----IKPITHKRLIEKELEGFGI-R--LNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 137 ~~~~~~~d~il~vv---d~-----~~~~~~~~~i~~~l~~~~~-~--~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
....+..++.-.+. .. .......+.+.+.++.+++ . .++++..||+|++||..++ +.+||
T Consensus 92 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDE 171 (235)
T 3tif_A 92 FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQ 171 (235)
T ss_dssp CCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred CccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 22333334432221 11 1123445667888888888 2 3788999999999999887 88899
Q ss_pred cCCCCCHHHHHHHHHH
Q 016864 197 TNTNLDLDTVKAICSE 212 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~~ 212 (381)
|++++|......++..
T Consensus 172 Pts~LD~~~~~~i~~~ 187 (235)
T 3tif_A 172 PTWALDSKTGEKIMQL 187 (235)
T ss_dssp TTTTSCHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHH
Confidence 9999999877766553
No 153
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.32 E-value=3.7e-16 Score=137.84 Aligned_cols=84 Identities=21% Similarity=0.222 Sum_probs=60.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE--EeeecCcccccccccCCCcchhhhhcccCC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA--KIQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
..+|+++|.+|||||||+++|++... ...+..|+.+.....+.+++. .+.++||||..... ......++.
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 101 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQ 101 (204)
Confidence 37999999999999999999986543 345566666666666666654 45599999975432 111224578
Q ss_pred cchhHHHHhcCCCh
Q 016864 143 CNCILIVLDAIKPI 156 (381)
Q Consensus 143 ~d~il~vvd~~~~~ 156 (381)
+|++++|+|++++.
T Consensus 102 ~d~iilv~D~~~~~ 115 (204)
T 3th5_A 102 TDVFLICFSLVSPA 115 (204)
Confidence 99999999987653
No 154
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.54 E-value=2.3e-14 Score=135.67 Aligned_cols=83 Identities=22% Similarity=0.242 Sum_probs=64.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEee--ecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQ--LLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~--l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+++|.+|||||||++.+++.. ....+++||.+.....+.+++..+. ++||||..... ......++.+
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 227 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNA-FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSYPQT 227 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC-CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-------TTGGGGCTTC
T ss_pred eEEEEECCCCCChHHHHHHHHhCC-CCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-------HHHHHhccCC
Confidence 799999999999999999998754 3456777888777777788776555 99999975532 1222346889
Q ss_pred chhHHHHhcCCCh
Q 016864 144 NCILIVLDAIKPI 156 (381)
Q Consensus 144 d~il~vvd~~~~~ 156 (381)
|++++|+|++++.
T Consensus 228 d~~i~v~d~~~~~ 240 (332)
T 2wkq_A 228 DVFLICFSLVSPA 240 (332)
T ss_dssp SEEEEEEETTCHH
T ss_pred CEEEEEEeCCCHH
Confidence 9999999998753
No 155
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.54 E-value=1.4e-15 Score=155.30 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=41.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccc-------------------------------cccccceeeeecEEEEEcCEE
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEV-------------------------------ASYEFTTLTCIPGVITYRGAK 113 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~-------------------------------~~~~~tT~~~~~g~i~~~g~~ 113 (381)
..+|+++|++|+|||||+|+|++....+ ...+++|++.....+.+++..
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~ 256 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKI 256 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeE
Confidence 3689999999999999999996532111 114688999998888888899
Q ss_pred eeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 114 IQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 114 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
+.++||||+.+.. ..+...+..+|++++|+|+..+
T Consensus 257 i~iiDTPGh~~f~-------~~~~~~~~~aD~alLVVDa~~g 291 (592)
T 3mca_A 257 YEIGDAPGHRDFI-------SGMIAGASSADFAVLVVDSSQN 291 (592)
T ss_dssp --CCEEESSSEEE-------EECCC-------CCSEEEEEEC
T ss_pred EEEEECCChHHHH-------HHHHHHHhhCCEEEEEEECCCC
Confidence 9999999987643 3344556889999999999754
No 156
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=3.1e-14 Score=126.78 Aligned_cols=154 Identities=23% Similarity=0.173 Sum_probs=97.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEE--eeecCcccccccccCCCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAK--IQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~--i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.+|+|+|.+|||||||+|+++|... ....++.++.+.....+.++|.. +.++||+|..... . .-.....+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~-----~-~l~~~~~~~ 111 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGEN-----E-WLHDHCMQV 111 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHH-----H-HHHHCCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchh-----h-hHHHHHHhh
Confidence 6899999999999999999998654 34556666667666777888764 5679999854311 0 011123567
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|..+... .+.+.. ++..+..
T Consensus 112 a~~~ilVydvt~~~s-f~~~~~--------------------------------------------~~~~l~~------- 139 (211)
T 2g3y_A 112 GDAYLIVYSITDRAS-FEKASE--------------------------------------------LRIQLRR------- 139 (211)
T ss_dssp CSEEEEEEETTCHHH-HHHHHH--------------------------------------------HHHHHHT-------
T ss_pred CCEEEEEEECCCHHH-HHHHHH--------------------------------------------HHHHHHH-------
Confidence 889999998876432 111111 1111000
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh--cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD--KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~--~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.. .....|+|+|.||+|+... ++...+. ...+++.+||+++.|++++++.+.+.+
T Consensus 140 ------------~~-~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 140 ------------AR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp ------------SG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------Hh-CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0012699999999998632 2222221 123578899999999999999988765
No 157
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.54 E-value=7.6e-15 Score=127.38 Aligned_cols=153 Identities=20% Similarity=0.092 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc-ccccccc-eeeeecEEEEE-----cCEEeeecCcccccccccCCCcchhhhhc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE-VASYEFT-TLTCIPGVITY-----RGAKIQLLDLPGIIEGAKDGKGRGRQVIS 138 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~-~~~~~~t-T~~~~~g~i~~-----~g~~i~l~DtpG~~~~~~~~~~~~~~~~~ 138 (381)
.+|+++|++|||||||+|+|++...+ .+.+..| +.+...-.+.+ ....+.++||||....... .. .
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----~~---~ 75 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST----HP---H 75 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT----SH---H
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh----hH---H
Confidence 58999999999999999999986432 2333222 23332222222 2457889999997543211 01 1
Q ss_pred ccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCC
Q 016864 139 TARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNA 218 (381)
Q Consensus 139 ~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~ 218 (381)
.++.+|++++|+|.+++....+.+..+ +..+
T Consensus 76 ~~~~~~~~i~v~d~~~~~~s~~~~~~~--------------------------------------------~~~~----- 106 (184)
T 2zej_A 76 FMTQRALYLAVYDLSKGQAEVDAMKPW--------------------------------------------LFNI----- 106 (184)
T ss_dssp HHHHSEEEEEEEEGGGCHHHHHTHHHH--------------------------------------------HHHH-----
T ss_pred HccCCcEEEEEEeCCcchhHHHHHHHH--------------------------------------------HHHH-----
Confidence 245678888888987763222222111 1111
Q ss_pred ccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHH--------HHHhc-C-CC----eeeecccccc-cHHHHH
Q 016864 219 DITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEEL--------EILDK-L-PH----YCPVSAHLEW-NLDGLL 283 (381)
Q Consensus 219 ~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l--------~~l~~-~-~~----~v~vSa~~~~-gl~~L~ 283 (381)
.......|+++|.||+|+.....+ +.+.. . .+ ++.+||+++. ++++|+
T Consensus 107 -----------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~ 169 (184)
T 2zej_A 107 -----------------KARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLR 169 (184)
T ss_dssp -----------------HHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHH
T ss_pred -----------------HhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHH
Confidence 000012699999999999865332 22221 1 12 7889999996 999999
Q ss_pred HHHHHHcC
Q 016864 284 EKIWEYLN 291 (381)
Q Consensus 284 ~~i~~~l~ 291 (381)
+.+.+.+.
T Consensus 170 ~~i~~~~~ 177 (184)
T 2zej_A 170 KTIINESL 177 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988664
No 158
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.54 E-value=2.9e-14 Score=139.63 Aligned_cols=151 Identities=22% Similarity=0.275 Sum_probs=94.8
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhccccc---ccccccceeeeecEEEEE---------------c--------CEEeeec
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSE---VASYEFTTLTCIPGVITY---------------R--------GAKIQLL 117 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~---~~~~~~tT~~~~~g~i~~---------------~--------g~~i~l~ 117 (381)
...+|+++|+.|+|||||+++|+|.... ....+++|++.......+ . ...+.++
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 3479999999999999999999986421 223467788765443332 1 1679999
Q ss_pred CcccccccccCCCcchhhhhcccCCcchhHHHHhcCCCh--HHHHHHHHHHHhcccccccCcCcccceeeccccceeeec
Q 016864 118 DLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPI--THKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTST 195 (381)
Q Consensus 118 DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~--~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~ 195 (381)
||||..+.. ..+...+..+|++++|+|+.++. .+......
T Consensus 87 DtPGh~~f~-------~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~------------------------------- 128 (408)
T 1s0u_A 87 DSPGHETLM-------ATMLSGASLMDGAILVIAANEPCPQPQTKEHLM------------------------------- 128 (408)
T ss_dssp ECSSHHHHH-------HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH-------------------------------
T ss_pred ECCCHHHHH-------HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH-------------------------------
Confidence 999975532 44555667899999999998753 11111000
Q ss_pred ccCCCCCHHHHHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHH-------HHHHH-h----
Q 016864 196 VTNTNLDLDTVKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLE-------ELEIL-D---- 263 (381)
Q Consensus 196 ~~~~~l~~~~v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~-------~l~~l-~---- 263 (381)
++..++ .+|+|+|+||+|+...+ ++..+ .
T Consensus 129 -------------~~~~l~--------------------------~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~ 169 (408)
T 1s0u_A 129 -------------ALEILG--------------------------IDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIA 169 (408)
T ss_dssp -------------HHHHTT--------------------------CCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTT
T ss_pred -------------HHHHcC--------------------------CCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 111110 14899999999997532 22222 2
Q ss_pred cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 264 KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 264 ~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
...+++++||+++.|+++|++.+.+.++
T Consensus 170 ~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 170 ENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TTCCEEEC------CHHHHHHHHHHHSC
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 2347899999999999999999988665
No 159
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.54 E-value=1.8e-15 Score=157.35 Aligned_cols=88 Identities=30% Similarity=0.411 Sum_probs=61.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc-cccccccc--------------eeeeecE------------------------
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFT--------------TLTCIPG------------------------ 105 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~t--------------T~~~~~g------------------------ 105 (381)
..+|+++|.+|||||||+|+|+|... ++++.|.| |++...|
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 48999999999999999999999874 56777777 4432111
Q ss_pred ---------------EEEEcC----EEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCCh
Q 016864 106 ---------------VITYRG----AKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPI 156 (381)
Q Consensus 106 ---------------~i~~~g----~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~ 156 (381)
.+.+.. ..+.++||||+..... ........++.+|++++|+|++.+.
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~~ 214 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQPC 214 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTSTT
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCcc
Confidence 111111 3588999999876432 1233444668899999999998763
No 160
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.54 E-value=8.9e-16 Score=143.60 Aligned_cols=49 Identities=14% Similarity=0.013 Sum_probs=35.9
Q ss_pred ccEEEEEecCCcCCHHH--HHHHhc--------CCCeeeecccccccHHHHHHHHHHHc
Q 016864 242 MPCIYVINKIDQITLEE--LEILDK--------LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~--l~~l~~--------~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
+|+++|+||+|+..... .+.+.. +.+++.+||+++.|+++|.+.+.+..
T Consensus 193 ~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 193 QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp SSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred CeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 69999999999975322 222211 23578899999999999999987743
No 161
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.54 E-value=7.6e-16 Score=147.62 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=37.4
Q ss_pred ccEEEEEecCCcCCHHH----HHHH----h--------cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 242 MPCIYVINKIDQITLEE----LEIL----D--------KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~----l~~l----~--------~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.|.++|+||+|+..... ...+ . ..++++++||.++.|+++|.+.+.+.+.
T Consensus 213 ~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 213 MADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp SCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 48899999999975432 1122 1 1356889999999999999999988664
No 162
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.54 E-value=1.6e-14 Score=132.77 Aligned_cols=142 Identities=19% Similarity=0.185 Sum_probs=89.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...| ..|.+.++|.++. .+...... .....++..|.
T Consensus 42 ~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~i~-~~~~~~~~-~~~~i~~v~Q~ 108 (263)
T 2olj_A 42 GINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-----------DEGEIIIDGINLK-AKDTNLNK-VREEVGMVFQR 108 (263)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEESS-STTCCHHH-HHHHEEEECSS
T ss_pred eeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCEECC-CccccHHH-HhCcEEEEeCC
Confidence 34444445589999999999999999999999887 8999999998764 21111000 00011122222
Q ss_pred hcccCCcch---hHHHH-hcCC-C-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 137 ISTARTCNC---ILIVL-DAIK-P-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 137 ~~~~~~~d~---il~vv-d~~~-~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
.......++ +.+.. .... + ....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++
T Consensus 109 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts 188 (263)
T 2olj_A 109 FNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTS 188 (263)
T ss_dssp CCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcc
Confidence 222223233 22211 1111 2 2234567788899998 56788999999999998776 66677777
Q ss_pred CCCHHHHHHHHH
Q 016864 200 NLDLDTVKAICS 211 (381)
Q Consensus 200 ~l~~~~v~~~l~ 211 (381)
++|......+++
T Consensus 189 ~LD~~~~~~~~~ 200 (263)
T 2olj_A 189 ALDPEMVGEVLS 200 (263)
T ss_dssp TSCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 777765554433
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.54 E-value=5.8e-15 Score=142.43 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=60.7
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchh
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCI 146 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 146 (381)
+|+++|++|+|||||+++|+ ..++|++.....+.+++..+.++||||..+.. ..+...+..+|++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~-------~~~~~~~~~aD~a 87 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL-------KSLITALNISDIA 87 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH-------HHHHHHHHTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH-------HHHHHHHHHCCEE
Confidence 89999999999999999998 45778887777777778899999999986532 4455566889999
Q ss_pred HHHHhcCCC
Q 016864 147 LIVLDAIKP 155 (381)
Q Consensus 147 l~vvd~~~~ 155 (381)
++|+| ...
T Consensus 88 ilVvd-~~g 95 (370)
T 2elf_A 88 VLCIP-PQG 95 (370)
T ss_dssp EEEEC-TTC
T ss_pred EEEEc-CCC
Confidence 99999 544
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.54 E-value=2.1e-14 Score=125.47 Aligned_cols=152 Identities=24% Similarity=0.215 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEe--eecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKI--QLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i--~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+|+|+||||||||+++|+|...+....|..+.+...|.+.++|..+ .++||+|...... ...+ ..+.+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~----~~~~---~~~~~ 102 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA----ITSA---YYRGA 102 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC----CCHH---HHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhh----hhHH---HhhcC
Confidence 6899999999999999999999877666677778888899999998755 4699999754321 1122 23567
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
+.+++|+|..+... .+.+. .++..+.
T Consensus 103 ~~~i~v~d~~~~~s-~~~~~--------------------------------------------~~~~~~~--------- 128 (191)
T 1oix_A 103 VGALLVYDIAKHLT-YENVE--------------------------------------------RWLKELR--------- 128 (191)
T ss_dssp CEEEEEEETTCHHH-HHTHH--------------------------------------------HHHHHHH---------
T ss_pred CEEEEEEECcCHHH-HHHHH--------------------------------------------HHHHHHH---------
Confidence 78888888765421 11111 1111100
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhcCC--CeeeecccccccHHHHHHHHHHHc
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDKLP--HYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~~~--~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. . .....|+++++||+|+.. .+....+...+ .++.+||+++.+++++++.+.+.+
T Consensus 129 ---------~-~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 129 ---------D-H--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp ---------H-H--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 0 0 001259999999999863 23333343322 356799999999999999987643
No 165
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.53 E-value=4.2e-14 Score=123.77 Aligned_cols=154 Identities=22% Similarity=0.187 Sum_probs=94.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEE--eeecCcccccccccCCCcchhhhhcccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAK--IQLLDLPGIIEGAKDGKGRGRQVISTART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~--i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 142 (381)
.+|+++|.+|||||||+|+++|... ..++++.++.+.....+.++|.. +.++||+|...... .... ...+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~----~~~~--~~~~~ 80 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENE----WLHD--HCMQV 80 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----C----TTGG--GHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhh----hHHH--hhccc
Confidence 6899999999999999999998543 34556667777666777888764 46789998543110 0111 12356
Q ss_pred cchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccc
Q 016864 143 CNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITL 222 (381)
Q Consensus 143 ~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~ 222 (381)
+|++++|+|..+... .+.+..++ ..+..+
T Consensus 81 ~~~~i~v~dv~~~~s-~~~~~~~~-----------------------------------------~~l~~~--------- 109 (192)
T 2cjw_A 81 GDAYLIVYSITDRAS-FEKASELR-----------------------------------------IQLRRA--------- 109 (192)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHH-----------------------------------------HHHHHH---------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHH-----------------------------------------HHHHHh---------
Confidence 788888888876432 11111110 001110
Q ss_pred ccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHh-cC-CCeeeecccccccHHHHHHHHHHHc
Q 016864 223 RYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILD-KL-PHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 223 ~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~-~~-~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
. .....|+|+|.||+|+... ++...+. .+ .+++.+||+++.|++++++.+.+.+
T Consensus 110 -------------~-~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 110 -------------R-QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp -------------T-TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------h-CCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHH
Confidence 0 0012699999999998632 2222221 22 3578899999999999999988765
No 166
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.52 E-value=1.9e-14 Score=127.19 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=89.8
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhccc--ccccccccceeeeecEEEEEcCEEeeecCcccccccccCCC--c----chhh
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTF--SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGK--G----RGRQ 135 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~--~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~--~----~~~~ 135 (381)
.+.+|+|+|+||||||||+|+|+|.. ..+++.+++|... +.+.+++ .+.++||||+........ . ....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEET-TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 34899999999999999999999976 3446677777753 4555555 678899999854210000 0 0011
Q ss_pred hhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcc
Q 016864 136 VISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRI 215 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~ 215 (381)
.+.....++.+++++|+..+....+ ..+..++..
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~-------------------------------------------~~~~~~~~~--- 135 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLD-------------------------------------------QQMIEWAVD--- 135 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHH-------------------------------------------HHHHHHHHH---
T ss_pred HHHhhhcccEEEEEEECCCCCchhH-------------------------------------------HHHHHHHHH---
Confidence 1222245677777777765421110 001111111
Q ss_pred cCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHH----H---HHH-hcC---CCeeeecccccccHHHHHH
Q 016864 216 HNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEE----L---EIL-DKL---PHYCPVSAHLEWNLDGLLE 284 (381)
Q Consensus 216 ~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~----l---~~l-~~~---~~~v~vSa~~~~gl~~L~~ 284 (381)
...|.++|.||+|+.+..+ + ..+ .+. ...+++||+++.|++++.+
T Consensus 136 ------------------------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~ 191 (210)
T 1pui_A 136 ------------------------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQ 191 (210)
T ss_dssp ------------------------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHH
T ss_pred ------------------------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHH
Confidence 1268999999999987532 1 122 222 2467899999999999999
Q ss_pred HHHHHcC
Q 016864 285 KIWEYLN 291 (381)
Q Consensus 285 ~i~~~l~ 291 (381)
.+.+.+.
T Consensus 192 ~l~~~~~ 198 (210)
T 1pui_A 192 KLDTWFS 198 (210)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9988765
No 167
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.52 E-value=3e-14 Score=144.88 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=98.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc---------------cccccceeeeecEEEEEcC-----EEeeecCccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV---------------ASYEFTTLTCIPGVITYRG-----AKIQLLDLPGIIEG 125 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~---------------~~~~~tT~~~~~g~i~~~g-----~~i~l~DtpG~~~~ 125 (381)
.+|+|+|++|+|||||+++|+.....+ ....+.|+......+.|.+ ..+.++||||..+.
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 689999999999999999996532111 1125677777777777752 68889999998775
Q ss_pred ccCCCcchhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHH
Q 016864 126 AKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDT 205 (381)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~ 205 (381)
. ......++.+|++++|+|+.++..... ...
T Consensus 87 ~-------~ev~r~l~~aD~aILVVDa~~gv~~qt-~~~----------------------------------------- 117 (600)
T 2ywe_A 87 S-------YEVSRALAACEGALLLIDASQGIEAQT-VAN----------------------------------------- 117 (600)
T ss_dssp H-------HHHHHHHHTCSEEEEEEETTTBCCHHH-HHH-----------------------------------------
T ss_pred H-------HHHHHHHHhCCEEEEEEECCCCccHHH-HHH-----------------------------------------
Confidence 3 334445688999999999987632111 000
Q ss_pred HHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCH--HH-HHHHhc---CC--Ceeeecccccc
Q 016864 206 VKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL--EE-LEILDK---LP--HYCPVSAHLEW 277 (381)
Q Consensus 206 v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~--~~-l~~l~~---~~--~~v~vSa~~~~ 277 (381)
....+ ....|.|+|+||+|+... +. .+.+.. .. .++++||+++.
T Consensus 118 ~~~a~----------------------------~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~ 169 (600)
T 2ywe_A 118 FWKAV----------------------------EQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGI 169 (600)
T ss_dssp HHHHH----------------------------HTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTB
T ss_pred HHHHH----------------------------HCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCC
Confidence 00000 012699999999999753 22 233322 21 47999999999
Q ss_pred cHHHHHHHHHHHcCC
Q 016864 278 NLDGLLEKIWEYLNL 292 (381)
Q Consensus 278 gl~~L~~~i~~~l~~ 292 (381)
|+++|++.+.+.++.
T Consensus 170 GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 170 GIEEILEAIVNRIPP 184 (600)
T ss_dssp SHHHHHHHHHHHSCC
T ss_pred CchHHHHHHHHhccc
Confidence 999999999998763
No 168
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.51 E-value=7.9e-14 Score=128.96 Aligned_cols=142 Identities=20% Similarity=0.251 Sum_probs=93.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++...+. ... .....+++..|.
T Consensus 26 ~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p-----------~~G~I~~~G~~i~~~~~-~~~-~~~~~ig~v~Q~ 92 (275)
T 3gfo_A 26 GINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-----------SSGRILFDNKPIDYSRK-GIM-KLRESIGIVFQD 92 (275)
T ss_dssp EEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCCSHH-HHH-HHHHSEEEECSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCeEEEECCEECCcccc-cHH-HHhCcEEEEEcC
Confidence 33444444489999999999999999999999888 89999999987742110 000 001112222221
Q ss_pred hc-ccCCcch---hHHHHhcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCC
Q 016864 137 IS-TARTCNC---ILIVLDAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNT 199 (381)
Q Consensus 137 ~~-~~~~~d~---il~vvd~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~ 199 (381)
.. .+...++ +.+..... ......+.+.+.++.+++ ..++++..||+|++||..++ +.+|||++
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts 172 (275)
T 3gfo_A 93 PDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTA 172 (275)
T ss_dssp GGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTT
T ss_pred cccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 10 1112233 22222111 123345678888999998 57788999999999999887 88899999
Q ss_pred CCCHHHHHHHHH
Q 016864 200 NLDLDTVKAICS 211 (381)
Q Consensus 200 ~l~~~~v~~~l~ 211 (381)
++|......+++
T Consensus 173 ~LD~~~~~~i~~ 184 (275)
T 3gfo_A 173 GLDPMGVSEIMK 184 (275)
T ss_dssp TCCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 999987766654
No 169
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.51 E-value=1.3e-15 Score=151.63 Aligned_cols=148 Identities=20% Similarity=0.246 Sum_probs=104.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCN 144 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 144 (381)
.++|+++|++|+|||||+++|++.....+..+++|.+.....+.+++..+.++||||..... ......+..+|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~-------~~~~~~~~~aD 76 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFT-------SMRARGAQATD 76 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCT-------TSBCSSSBSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHH-------HHHHHHHhhCC
Confidence 37999999999999999999988655556667888887766777788899999999975543 22233467899
Q ss_pred hhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCcccccc
Q 016864 145 CILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLRY 224 (381)
Q Consensus 145 ~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~~ 224 (381)
++++|+|+.++.... +.+.+. .+.
T Consensus 77 ~aILVVda~~g~~~q------------------------------------------T~e~l~-~~~------------- 100 (501)
T 1zo1_I 77 IVVLVVAADDGVMPQ------------------------------------------TIEAIQ-HAK------------- 100 (501)
T ss_dssp SEEEEEETTTBSCTT------------------------------------------THHHHH-HHH-------------
T ss_pred EEEEEeecccCccHH------------------------------------------HHHHHH-HHH-------------
Confidence 999999987742100 001110 000
Q ss_pred CCChhHHHHHHhcccccccEEEEEecCCcCCH--HHH-HHHh-------c---CCCeeeecccccccHHHHHHHHHHH
Q 016864 225 DATADDLIDVIEGSRIYMPCIYVINKIDQITL--EEL-EILD-------K---LPHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 225 e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~--~~l-~~l~-------~---~~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
. ...|+|+++||+|+... +.+ ..+. . ..+++++||+++.|+++|++.+...
T Consensus 101 ------------~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 101 ------------A--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp ------------H--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred ------------h--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 0 12699999999999742 111 1111 1 1368999999999999999998653
No 170
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.51 E-value=3e-14 Score=131.04 Aligned_cols=143 Identities=19% Similarity=0.191 Sum_probs=89.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeee----------cCcccccccc
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQL----------LDLPGIIEGA 126 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l----------~DtpG~~~~~ 126 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.. ...... ...
T Consensus 24 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~-~~~ 91 (262)
T 1b0u_A 24 GVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-----------SEGAIIVNGQNINLVRDKDGQLKVADKNQL-RLL 91 (262)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCEEECTTSSEEESCHHHH-HHH
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEccccccccccccccChhhH-HHH
Confidence 34444445589999999999999999999999887 89999999987631 100000 000
Q ss_pred cCCCcchhhhhcccCCcchhHHHH----hcCC-C-hHHHHHHHHHHHhccc--c-cccCcCcccceeeccccce------
Q 016864 127 KDGKGRGRQVISTARTCNCILIVL----DAIK-P-ITHKRLIEKELEGFGI--R-LNKQPPNLTFRKKDKGGIN------ 191 (381)
Q Consensus 127 ~~~~~~~~~~~~~~~~~d~il~vv----d~~~-~-~~~~~~i~~~l~~~~~--~-~~~~~~~ls~~~~~r~~~~------ 191 (381)
....++..|........++.-.+. .... + ....+.+.+.++.+++ . .++++..||+|+++|..++
T Consensus 92 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~ 171 (262)
T 1b0u_A 92 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 171 (262)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred hcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 011122222222223333322221 1111 2 2234567788999998 4 6889999999999998776
Q ss_pred ---eeecccCCCCCHHHHHHHHH
Q 016864 192 ---FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 192 ---i~~~~~~~~l~~~~v~~~l~ 211 (381)
+.+|||++++|......++.
T Consensus 172 p~lllLDEPts~LD~~~~~~~~~ 194 (262)
T 1b0u_A 172 PDVLLFDEPTSALDPELVGEVLR 194 (262)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHH
Confidence 66677777777766555443
No 171
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.51 E-value=5e-14 Score=127.94 Aligned_cols=140 Identities=18% Similarity=0.127 Sum_probs=87.6
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+.... .....++..|..
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~v~q~~ 90 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-----------QKGKIIFNGQDITNKPAHVI---NRMGIALVPEGR 90 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCHHHH---HHTTEEEECSSC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCCHHHH---HhCCEEEEecCC
Confidence 3344444489999999999999999999999888 89999999977632111000 011122222222
Q ss_pred cccCCcchhHHHHhc----CCChHHHHHHHHHHHhcc-c--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 138 STARTCNCILIVLDA----IKPITHKRLIEKELEGFG-I--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 138 ~~~~~~d~il~vvd~----~~~~~~~~~i~~~l~~~~-~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
......++.-.+.-. .......+.+.+.++.++ + ..++++..||+|+++|..++ +.+|||++++
T Consensus 91 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~L 170 (240)
T 1ji0_A 91 RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL 170 (240)
T ss_dssp CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTC
T ss_pred ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 222333332222111 112223445667777774 6 56788999999999998776 6667777777
Q ss_pred CHHHHHHHHH
Q 016864 202 DLDTVKAICS 211 (381)
Q Consensus 202 ~~~~v~~~l~ 211 (381)
|......+++
T Consensus 171 D~~~~~~l~~ 180 (240)
T 1ji0_A 171 APILVSEVFE 180 (240)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7766655444
No 172
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.51 E-value=3.6e-14 Score=135.62 Aligned_cols=144 Identities=20% Similarity=0.219 Sum_probs=100.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...| ..|.+.++|.++.-.+...+. .....+++..|.
T Consensus 46 ~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p-----------~~G~I~i~G~~i~~~~~~~~~-~~r~~Ig~v~Q~ 113 (366)
T 3tui_C 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-----------TEGSVLVDGQELTTLSESELT-KARRQIGMIFQH 113 (366)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECSSCCHHHHH-HHHTTEEEECSS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHHH-HHhCcEEEEeCC
Confidence 34444444589999999999999999999999888 899999999877533211111 011233444444
Q ss_pred hcccCCcchhHHH---HhcC-CC-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIV---LDAI-KP-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~~-~~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
...+...++.-.+ .... .+ ....+.+.+.|+.+++ ..++++..||+|++||..++ +.+|||+++
T Consensus 114 ~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~ 193 (366)
T 3tui_C 114 FNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193 (366)
T ss_dssp CCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTT
T ss_pred CccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 4444444443322 1211 12 3445678888999998 67889999999999999887 788999999
Q ss_pred CCHHHHHHHHHH
Q 016864 201 LDLDTVKAICSE 212 (381)
Q Consensus 201 l~~~~v~~~l~~ 212 (381)
+|......+++.
T Consensus 194 LD~~~~~~i~~l 205 (366)
T 3tui_C 194 LDPATTRSILEL 205 (366)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999877766553
No 173
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.51 E-value=6.8e-14 Score=128.37 Aligned_cols=142 Identities=18% Similarity=0.110 Sum_probs=93.4
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+.+|++.. +..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+... ......++..
T Consensus 25 ~vsl~i~~--Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~v~ 88 (257)
T 1g6h_A 25 GVSISVNK--GDVTLIIGPNGSGKSTLINVITGFLKA-----------DEGRVYFENKDITNKEPAE---LYHYGIVRTF 88 (257)
T ss_dssp EECCEEET--TCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCHHH---HHHHTEEECC
T ss_pred eeEEEEeC--CCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHHH---HHhCCEEEEc
Confidence 44555554 479999999999999999999999887 8999999997753211000 0001111222
Q ss_pred hhhcccCCcchhHHHH---hc---------------CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---
Q 016864 135 QVISTARTCNCILIVL---DA---------------IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN--- 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv---d~---------------~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~--- 191 (381)
|........++.-.+. .. .......+.+.+.++.+++ ..++++..||+|++||..++
T Consensus 89 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL 168 (257)
T 1g6h_A 89 QTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRAL 168 (257)
T ss_dssp CCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred cCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHH
Confidence 2111122222322211 11 1122334567788899998 56888999999999999887
Q ss_pred ------eeecccCCCCCHHHHHHHHHH
Q 016864 192 ------FTSTVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 192 ------i~~~~~~~~l~~~~v~~~l~~ 212 (381)
+.+|||++++|......+++.
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~ 195 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNH 195 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 788999999999877766553
No 174
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.51 E-value=4.2e-14 Score=126.37 Aligned_cols=153 Identities=18% Similarity=0.172 Sum_probs=93.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC--EEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG--AKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+|+|||.+|||||||++.++.........|....+...-.+.+++ ..+.++||+|...... -....++.+
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~-------l~~~~~~~a 86 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS-------LIPSYIRDS 86 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGG-------GHHHHHTTC
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh-------HHHHHhccc
Confidence 6899999999999999999986543222122222344444455555 4678999999654321 111245899
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcccCCccccc
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIHNADITLR 223 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~~~~~~~~ 223 (381)
+++++|.|..++.. .+.+. .++..+.
T Consensus 87 ~~~ilv~di~~~~S-f~~i~--------------------------------------------~~~~~i~--------- 112 (216)
T 4dkx_A 87 AAAVVVYDITNVNS-FQQTT--------------------------------------------KWIDDVR--------- 112 (216)
T ss_dssp SEEEEEEETTCHHH-HHTHH--------------------------------------------HHHHHHH---------
T ss_pred cEEEEEeecchhHH-HHHHH--------------------------------------------HHHHHHH---------
Confidence 99999999877532 11111 1111110
Q ss_pred cCCChhHHHHHHhcccccccEEEEEecCCcCC-----HHHHHHHhc--CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 224 YDATADDLIDVIEGSRIYMPCIYVINKIDQIT-----LEELEILDK--LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 224 ~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~-----~~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.. .....|+|+|.||+|+.. .++.+.+.. ....+.+||+++.|++++++.|.+.+.
T Consensus 113 ---------~~---~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 113 ---------TE---RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp ---------HH---HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred ---------Hh---cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 00 011269999999999863 333333322 234788999999999999999988764
No 175
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.50 E-value=7e-14 Score=122.48 Aligned_cols=84 Identities=20% Similarity=0.228 Sum_probs=55.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEE--E---cCEEeeecCcccccccccCCCcchhhhhcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVIT--Y---RGAKIQLLDLPGIIEGAKDGKGRGRQVIST 139 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~--~---~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 139 (381)
..+|+++|.+|||||||++.+++...+. +..+.+.....+. + ....+.++||||....... .......
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~~~~~~~ 92 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP----TFDYEMI 92 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT----TCCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh----hhhcccc
Confidence 3799999999999999999999864332 2222222222222 2 2368899999996442211 0000234
Q ss_pred cCCcchhHHHHhcCCC
Q 016864 140 ARTCNCILIVLDAIKP 155 (381)
Q Consensus 140 ~~~~d~il~vvd~~~~ 155 (381)
++.+|++++|+|+.++
T Consensus 93 ~~~~~~~i~v~d~~~~ 108 (196)
T 3llu_A 93 FRGTGALIYVIDAQDD 108 (196)
T ss_dssp HHTCSEEEEEEETTSC
T ss_pred cccCCEEEEEEECCCc
Confidence 5789999999999876
No 176
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.49 E-value=4.5e-14 Score=137.68 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=62.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc----------------ccccccceeeeecEEEEEcCEEeeecCcccccccccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE----------------VASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG 129 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~----------------~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~ 129 (381)
.+|+++|++|+|||||+++|++.... .....++|++.....+..++..+.++||||..+..
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~--- 80 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV--- 80 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH---
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH---
Confidence 68999999999999999999874211 01135677776554555567899999999986632
Q ss_pred CcchhhhhcccCCcchhHHHHhcCCC
Q 016864 130 KGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 130 ~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
..+...+..+|++++|+|+.++
T Consensus 81 ----~~~~~~~~~aD~~ilVvda~~g 102 (397)
T 1d2e_A 81 ----KNMITGTAPLDGCILVVAANDG 102 (397)
T ss_dssp ----HHHHHTSSCCSEEEEEEETTTC
T ss_pred ----HHHHhhHhhCCEEEEEEECCCC
Confidence 3445567899999999999875
No 177
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.49 E-value=4.2e-14 Score=143.96 Aligned_cols=150 Identities=19% Similarity=0.303 Sum_probs=93.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc---------------cccccceeeeecEEEEEcC-----EEeeecCccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV---------------ASYEFTTLTCIPGVITYRG-----AKIQLLDLPGIIEG 125 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~---------------~~~~~tT~~~~~g~i~~~g-----~~i~l~DtpG~~~~ 125 (381)
.+|+|+|++|+|||||+++|+.....+ ....+.|+......+.|.+ ..+.++||||..+.
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 689999999999999999997532111 1124677777777777752 68899999998764
Q ss_pred ccCCCcchhhhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHH
Q 016864 126 AKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDT 205 (381)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~ 205 (381)
. ......++.+|++++|+|+.++......
T Consensus 85 ~-------~ev~~~l~~aD~aILVVDa~~gv~~qt~-------------------------------------------- 113 (599)
T 3cb4_D 85 S-------YEVSRSLAACEGALLVVDAGQGVEAQTL-------------------------------------------- 113 (599)
T ss_dssp H-------HHHHHHHHHCSEEEEEEETTTCCCTHHH--------------------------------------------
T ss_pred H-------HHHHHHHHHCCEEEEEEECCCCCCHHHH--------------------------------------------
Confidence 3 3344456789999999999876321110
Q ss_pred HHHHHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCH--HH-HHHHh---cC--CCeeeecccccc
Q 016864 206 VKAICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL--EE-LEILD---KL--PHYCPVSAHLEW 277 (381)
Q Consensus 206 v~~~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~--~~-l~~l~---~~--~~~v~vSa~~~~ 277 (381)
..+.. .+. ..+|.|+|+||+|+... +. .+.+. .. ..++++||+++.
T Consensus 114 -~~~~~----------------------~~~---~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~ 167 (599)
T 3cb4_D 114 -ANCYT----------------------AME---MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGV 167 (599)
T ss_dssp -HHHHH----------------------HHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCT
T ss_pred -HHHHH----------------------HHH---CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCC
Confidence 00000 000 12699999999999852 21 22222 22 258999999999
Q ss_pred cHHHHHHHHHHHcCC
Q 016864 278 NLDGLLEKIWEYLNL 292 (381)
Q Consensus 278 gl~~L~~~i~~~l~~ 292 (381)
|+++|++.+.+.++.
T Consensus 168 GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 168 GVQDVLERLVRDIPP 182 (599)
T ss_dssp THHHHHHHHHHHSCC
T ss_pred CchhHHHHHhhcCCC
Confidence 999999999998763
No 178
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.49 E-value=1.5e-13 Score=124.68 Aligned_cols=138 Identities=20% Similarity=0.270 Sum_probs=94.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++.... ..++|+|+||||||||+++|+|...| ..|.+.++|.++.- .+. .....++..|.
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~--~~~----~~~~i~~v~q~ 78 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP-----------DRGEVRLNGADITP--LPP----ERRGIGFVPQD 78 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--SCT----TTSCCBCCCSS
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCc--Cch----hhCcEEEEcCC
Confidence 44555556 79999999999999999999999877 88999999977531 111 11122333333
Q ss_pred hcccCCcchhHHHHhcC--CC-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCC
Q 016864 137 ISTARTCNCILIVLDAI--KP-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLD 202 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~--~~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~ 202 (381)
.......++.-.+.-.. .. ....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++|
T Consensus 79 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD 158 (240)
T 2onk_A 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCC
T ss_pred CccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 22233334433322111 11 1234567888999998 46788999999999999887 77899999999
Q ss_pred HHHHHHHHHH
Q 016864 203 LDTVKAICSE 212 (381)
Q Consensus 203 ~~~v~~~l~~ 212 (381)
......+++.
T Consensus 159 ~~~~~~~~~~ 168 (240)
T 2onk_A 159 LKTKGVLMEE 168 (240)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9877666553
No 179
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.48 E-value=3.8e-14 Score=147.48 Aligned_cols=84 Identities=18% Similarity=0.244 Sum_probs=64.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHhc---cccc---------ccc------cccceeeeecEEEEEcC-------EEeeecCc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTG---TFSE---------VAS------YEFTTLTCIPGVITYRG-------AKIQLLDL 119 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g---~~~~---------~~~------~~~tT~~~~~g~i~~~g-------~~i~l~Dt 119 (381)
..+|+|+|+.|+|||||+++|+. .... ..+ ..+.|+......+.|++ ..+.++||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 37999999999999999999953 2211 111 34677777777788877 89999999
Q ss_pred ccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 120 PGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 120 pG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
||..+.. ......++.+|.+++|+|++.+
T Consensus 90 PG~~df~-------~~~~~~l~~aD~aIlVvDa~~g 118 (704)
T 2rdo_7 90 PGHVDFT-------IEVERSMRVLDGAVMVYCAVGG 118 (704)
T ss_pred CCccchH-------HHHHHHHHHCCEEEEEEeCCCC
Confidence 9987643 3444566889999999999876
No 180
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.48 E-value=1.9e-13 Score=125.10 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=90.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.- .+ .......++..|.
T Consensus 33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~~--~~---~~~~~~i~~v~q~ 96 (256)
T 1vpl_A 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-----------SSGIVTVFGKNVVE--EP---HEVRKLISYLPEE 96 (256)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEETTT--CH---HHHHTTEEEECTT
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCc--cH---HHHhhcEEEEcCC
Confidence 34444444589999999999999999999999887 89999999976531 10 0001112222222
Q ss_pred hcccCCcchhHHH---Hhc-CCC-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIV---LDA-IKP-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~-~~~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
.......++.-.+ ... ..+ ....+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||+++
T Consensus 97 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 176 (256)
T 1vpl_A 97 AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSG 176 (256)
T ss_dssp CCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 2222232332221 111 112 2224567788888888 46788999999999998886 677888888
Q ss_pred CCHHHHHHHHH
Q 016864 201 LDLDTVKAICS 211 (381)
Q Consensus 201 l~~~~v~~~l~ 211 (381)
+|......+++
T Consensus 177 LD~~~~~~l~~ 187 (256)
T 1vpl_A 177 LDVLNAREVRK 187 (256)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 88876665544
No 181
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.48 E-value=5e-14 Score=138.97 Aligned_cols=83 Identities=24% Similarity=0.221 Sum_probs=59.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc-----------ccccc----------------------cceeeeecEEEEEcCE
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE-----------VASYE----------------------FTTLTCIPGVITYRGA 112 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~-----------~~~~~----------------------~tT~~~~~g~i~~~g~ 112 (381)
.+|+++|++|+|||||+|+|++.... .+..+ +.|++.....+.+++.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 68999999999999999999865411 11122 4455554455566788
Q ss_pred EeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 113 KIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 113 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.+.++||||..+.. ..+...+..+|++++|+|+.++
T Consensus 105 ~~~iiDtpGh~~f~-------~~~~~~~~~aD~~ilVvDa~~g 140 (434)
T 1zun_B 105 KFIIADTPGHEQYT-------RNMATGASTCDLAIILVDARYG 140 (434)
T ss_dssp EEEEEECCCSGGGH-------HHHHHHHTTCSEEEEEEETTTC
T ss_pred eEEEEECCChHHHH-------HHHHHHHhhCCEEEEEEECCCC
Confidence 99999999976532 3444456899999999999876
No 182
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.48 E-value=1.2e-13 Score=132.88 Aligned_cols=139 Identities=19% Similarity=0.175 Sum_probs=101.4
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.- .+. ...++++..|.
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~G~~~~~--~~~----~~r~ig~VfQ~ 83 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-----------TSGDLFIGEKRMND--TPP----AERGVGMVFQS 83 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--CCG----GGSCEEEECTT
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC-----------CCeEEEECCEECCC--CCH----HHCCEEEEecC
Confidence 34444444589999999999999999999999888 89999999987642 221 12334555665
Q ss_pred hcccCCcchhHHHH---hcC--CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIVL---DAI--KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~vv---d~~--~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
....+..++.-.+. ... ......+.+.+.++.+++ ..++++..||+|++||..++ +.+|||+++
T Consensus 84 ~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~ 163 (381)
T 3rlf_A 84 YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163 (381)
T ss_dssp CCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 55556656543332 211 123345678888999998 67889999999999999887 888999999
Q ss_pred CCHHHHHHHHHH
Q 016864 201 LDLDTVKAICSE 212 (381)
Q Consensus 201 l~~~~v~~~l~~ 212 (381)
+|......++..
T Consensus 164 LD~~~~~~l~~~ 175 (381)
T 3rlf_A 164 LDAALRVQMRIE 175 (381)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 998766665543
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.47 E-value=1.2e-14 Score=136.94 Aligned_cols=50 Identities=20% Similarity=0.163 Sum_probs=34.5
Q ss_pred ccEEEEEecCCcCCHHH--HHHHhc--------CCCeeeecccc---cccHHHHHHHHHHHcC
Q 016864 242 MPCIYVINKIDQITLEE--LEILDK--------LPHYCPVSAHL---EWNLDGLLEKIWEYLN 291 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~--l~~l~~--------~~~~v~vSa~~---~~gl~~L~~~i~~~l~ 291 (381)
+|+++|+||+|+..... .+.+.. +.+++.+|+.+ +.|++++++.+.+.++
T Consensus 199 ~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~ 261 (315)
T 1jwy_B 199 KRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK 261 (315)
T ss_dssp SSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence 69999999999974332 332221 12345556666 7899999999988775
No 184
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.46 E-value=9.6e-14 Score=126.62 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=72.3
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||||||||+++|+|...+ . |.+.++|.++.-.+...+. ...++..|..
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----------~-G~i~~~g~~~~~~~~~~~~----~~i~~v~q~~ 82 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-----------K-GSIQFAGQPLEAWSATKLA----LHRAYLSQQQ 82 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----------E-EEEEETTEEGGGSCHHHHH----HHEEEECSCC
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------C-eEEEECCEECCcCCHHHHh----ceEEEECCCC
Confidence 3444444489999999999999999999999888 8 9999999775322111000 0011111211
Q ss_pred cccCCcchhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 138 STARTCNCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 138 ~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
......++.-.+.-........+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA 138 (249)
T 2qi9_C 83 TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 138 (249)
T ss_dssp CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 1122223322222111111114567788888888 56788999999999996554
No 185
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.46 E-value=4.2e-14 Score=130.32 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=75.0
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
+++|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...... ..+...
T Consensus 29 ~vsl~i~--~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~~----~i~~v~ 91 (266)
T 4g1u_C 29 DVSLHIA--SGEMVAIIGPNGAGKSTLLRLLTGYLSP-----------SHGECHLLGQNLNSWQPKALAR----TRAVMR 91 (266)
T ss_dssp EEEEEEE--TTCEEEEECCTTSCHHHHHHHHTSSSCC-----------SSCEEEETTEETTTSCHHHHHH----HEEEEC
T ss_pred eeEEEEc--CCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCCHHHHhh----eEEEEe
Confidence 3444444 4489999999999999999999999888 8899999998764221100000 011111
Q ss_pred hhhcccCCcchhHHHH---hcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce
Q 016864 135 QVISTARTCNCILIVL---DAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN 191 (381)
Q Consensus 135 ~~~~~~~~~d~il~vv---d~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~ 191 (381)
|........++.-.+. .........+.+.+.++.+++ ..++++..||+|++||..++
T Consensus 92 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iA 153 (266)
T 4g1u_C 92 QYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLA 153 (266)
T ss_dssp SCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHH
T ss_pred cCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 1111112223322221 111223345667788888888 56788999999999996654
No 186
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.46 E-value=4.9e-14 Score=139.07 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=58.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc-------------------------c------ccccceeeeecEEEEEcCEEe
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV-------------------------A------SYEFTTLTCIPGVITYRGAKI 114 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~-------------------------~------~~~~tT~~~~~g~i~~~g~~i 114 (381)
.+|+++|++|+|||||+++|++....+ . ..+++|++.....+.+.+..+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 699999999999999999997642111 0 146788888877888888999
Q ss_pred eecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 115 QLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 115 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.++||||..+.. ..+...+..+|++++|+|+.++
T Consensus 87 ~iiDtpG~~~f~-------~~~~~~~~~aD~~ilVvDa~~g 120 (435)
T 1jny_A 87 TIIDAPGHRDFV-------KNMITGASQADAAILVVSAKKG 120 (435)
T ss_dssp EECCCSSSTTHH-------HHHHHTSSCCSEEEEEEECSTT
T ss_pred EEEECCCcHHHH-------HHHHhhhhhcCEEEEEEECCCC
Confidence 999999986643 3455567899999999999875
No 187
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.46 E-value=2.4e-14 Score=145.03 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=87.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc------ccccccceeeeecEEEEEc----CEEeeecCcccccccccCCCcchhh
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE------VASYEFTTLTCIPGVITYR----GAKIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~------~~~~~~tT~~~~~g~i~~~----g~~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
.+|+++|.+|||||||+|+|++.... ++...+++..+..+.+.++ +..+.++||||...... ....
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~----~~~~ 117 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA----SHQF 117 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT----TCHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH----HHHH
Confidence 79999999999999999999987532 1111122211111122222 57899999999533221 1122
Q ss_pred hhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhcc
Q 016864 136 VISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRI 215 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~ 215 (381)
.++.+|++++|+|++..... ..+... +..+
T Consensus 118 ---~l~~~d~ii~V~D~s~~~~~-~~~~~~--------------------------------------------l~~~-- 147 (535)
T 3dpu_A 118 ---FMTRSSVYMLLLDSRTDSNK-HYWLRH--------------------------------------------IEKY-- 147 (535)
T ss_dssp ---HHHSSEEEEEEECGGGGGGH-HHHHHH--------------------------------------------HHHH--
T ss_pred ---HccCCcEEEEEEeCCCchhH-HHHHHH--------------------------------------------HHHh--
Confidence 34679999999998764221 111111 1111
Q ss_pred cCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCH-----HHHHHHhc--CCCeeeecccccccHHHHHHHHHH
Q 016864 216 HNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITL-----EELEILDK--LPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 216 ~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~-----~~l~~l~~--~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
....|+|+|+||+|+... +.++.... ..+++.+||+++.|+++|++.+.+
T Consensus 148 -----------------------~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 148 -----------------------GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp -----------------------SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHH
T ss_pred -----------------------CCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHH
Confidence 012699999999998742 22333222 235899999999999999999998
Q ss_pred HcC
Q 016864 289 YLN 291 (381)
Q Consensus 289 ~l~ 291 (381)
.+.
T Consensus 205 ~~~ 207 (535)
T 3dpu_A 205 AVL 207 (535)
T ss_dssp HHT
T ss_pred HHh
Confidence 765
No 188
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.46 E-value=1.4e-13 Score=138.52 Aligned_cols=83 Identities=23% Similarity=0.320 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc----------------cc------ccccceeeeecEEEEEcCEEeeecCccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE----------------VA------SYEFTTLTCIPGVITYRGAKIQLLDLPGII 123 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~----------------~~------~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~ 123 (381)
.+|+++|++|||||||+++|++.... +. ...++|++.....+.+++..+.++||||..
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE 93 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence 69999999999999999999863211 11 134666766667788899999999999986
Q ss_pred ccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 124 EGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
+.. ......++.+|++++|+|+.++
T Consensus 94 df~-------~~~~~~l~~aD~~IlVvDa~~g 118 (529)
T 2h5e_A 94 DFS-------EDTYRTLTAVDCCLMVIDAAKG 118 (529)
T ss_dssp TCC-------HHHHHGGGGCSEEEEEEETTTC
T ss_pred hHH-------HHHHHHHHHCCEEEEEEeCCcc
Confidence 542 3445567899999999999876
No 189
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.46 E-value=1.4e-13 Score=122.53 Aligned_cols=130 Identities=20% Similarity=0.219 Sum_probs=81.0
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++. + . ....++..|..
T Consensus 28 vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~--~---~----~~~i~~v~q~~ 87 (214)
T 1sgw_A 28 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-----------LKGEIIYNGVPIT--K---V----KGKIFFLPEEI 87 (214)
T ss_dssp EEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEGG--G---G----GGGEEEECSSC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEhh--h---h----cCcEEEEeCCC
Confidence 3344444489999999999999999999999887 8999999997753 1 0 01111122221
Q ss_pred cccCCcchh---HHHHhcCC-ChHHHHHHHHHHHhcccc-cccCcCcccceeeccccce---------eeecccCCCCCH
Q 016864 138 STARTCNCI---LIVLDAIK-PITHKRLIEKELEGFGIR-LNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDL 203 (381)
Q Consensus 138 ~~~~~~d~i---l~vvd~~~-~~~~~~~i~~~l~~~~~~-~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~ 203 (381)
......++. .+...... .. +.+.+.+.++.+++. ..+++..||+|+++|..++ +.+|||++++|.
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~ 166 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVASLYGVKV-NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166 (214)
T ss_dssp CCCTTSBHHHHHHHHHHHTTCCC-CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred cCCCCCCHHHHHHHHHHhcCCch-HHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCH
Confidence 122222332 22111111 11 245677788888882 2788999999999997765 555666666665
Q ss_pred HHHHH
Q 016864 204 DTVKA 208 (381)
Q Consensus 204 ~~v~~ 208 (381)
.....
T Consensus 167 ~~~~~ 171 (214)
T 1sgw_A 167 DSKHK 171 (214)
T ss_dssp TTHHH
T ss_pred HHHHH
Confidence 44433
No 190
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.46 E-value=2.7e-13 Score=129.46 Aligned_cols=139 Identities=19% Similarity=0.208 Sum_probs=99.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+. +.+. .....++..|.
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~--~~~~----~~r~ig~v~Q~ 95 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-----------TKGDVWIGGKRVT--DLPP----QKRNVGLVFQN 95 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TCCG----GGSSEEEECGG
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEECCEECC--cCCh----hhCcEEEEecC
Confidence 34444444489999999999999999999999888 8999999998763 2221 12234444555
Q ss_pred hcccCCcchhHHH---HhcCC-C-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIV---LDAIK-P-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~~~-~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
....+..++.-.+ ..... + ....+.+.+.++.+++ ..++++..||+|++||..++ +.+|||+++
T Consensus 96 ~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 175 (355)
T 1z47_A 96 YALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAA 175 (355)
T ss_dssp GCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCC
T ss_pred cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 4445555553332 22111 2 2335678888999998 57889999999999999887 788999999
Q ss_pred CCHHHHHHHHHH
Q 016864 201 LDLDTVKAICSE 212 (381)
Q Consensus 201 l~~~~v~~~l~~ 212 (381)
+|......++..
T Consensus 176 LD~~~r~~l~~~ 187 (355)
T 1z47_A 176 IDTQIRRELRTF 187 (355)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999876665544
No 191
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.45 E-value=1.3e-13 Score=140.40 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=54.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccc-cceeeeecEEEEE------------------cCEEeeecCccccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYE-FTTLTCIPGVITY------------------RGAKIQLLDLPGIIEG 125 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~-~tT~~~~~g~i~~------------------~g~~i~l~DtpG~~~~ 125 (381)
.++|+++|++|+|||||+++|++.... ...| ++|.+.....+.+ ....+.++||||....
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~-~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA-SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS-CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc-cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 379999999999999999999876432 1122 3443322222211 1125899999998654
Q ss_pred ccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 126 AKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.. .....++.+|++++|+|+.++
T Consensus 84 ~~-------~~~r~~~~aD~aILVvDa~~G 106 (594)
T 1g7s_A 84 TT-------LRKRGGALADLAILIVDINEG 106 (594)
T ss_dssp TT-------SBCSSSBSCSEEEEEEETTTC
T ss_pred HH-------HHHHHHhhCCEEEEEEECCCC
Confidence 32 122345789999999999885
No 192
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.45 E-value=5.3e-14 Score=139.63 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=65.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc-------------------------cc------cccceeeeecEEEEEcCEEe
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV-------------------------AS------YEFTTLTCIPGVITYRGAKI 114 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~-------------------------~~------~~~tT~~~~~g~i~~~g~~i 114 (381)
.+|+++|++|+|||||+|+|++....+ .+ .+++|++.....+.+.+..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceE
Confidence 689999999999999999998642110 11 26789988888888888999
Q ss_pred eecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 115 QLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 115 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.++||||..+. ...+...+..+|++++|+|+.++
T Consensus 88 ~iiDtPGh~~f-------~~~~~~~~~~aD~~ilVvda~~g 121 (458)
T 1f60_A 88 TVIDAPGHRDF-------IKNMITGTSQADCAILIIAGGVG 121 (458)
T ss_dssp EEEECCCCTTH-------HHHHHHSSSCCSEEEEEEECSHH
T ss_pred EEEECCCcHHH-------HHHHHhhhhhCCEEEEEEeCCcC
Confidence 99999997543 24455667899999999999764
No 193
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.45 E-value=4.4e-13 Score=124.29 Aligned_cols=141 Identities=16% Similarity=0.125 Sum_probs=92.4
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEee--ecCcccccccccCCCcc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQ--LLDLPGIIEGAKDGKGR 132 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~--l~DtpG~~~~~~~~~~~ 132 (381)
+.+|++. .+..++|+|+||||||||+++|+|...+ ..|.+.++|.++. -.+... .....++
T Consensus 39 ~isl~i~--~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~----~~~~i~~ 101 (279)
T 2ihy_A 39 KISWQIA--KGDKWILYGLNGAGKTTLLNILNAYEPA-----------TSGTVNLFGKMPGKVGYSAET----VRQHIGF 101 (279)
T ss_dssp EEEEEEE--TTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTBCCC---CCHHH----HHTTEEE
T ss_pred eeeEEEc--CCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCeEEEECCEEcccccCCHHH----HcCcEEE
Confidence 3444444 4489999999999999999999999888 8899999987653 111100 0111222
Q ss_pred hhhhhccc--CCcchhHHHHhcC---------CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce--------
Q 016864 133 GRQVISTA--RTCNCILIVLDAI---------KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN-------- 191 (381)
Q Consensus 133 ~~~~~~~~--~~~d~il~vvd~~---------~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~-------- 191 (381)
..|..... ...++.-.+.-+. ......+.+.+.++.+++ ..++++..||+|+++|..++
T Consensus 102 v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 181 (279)
T 2ihy_A 102 VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQ 181 (279)
T ss_dssp ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 22221111 1113322221110 112334567788899998 56788999999999999887
Q ss_pred -eeecccCCCCCHHHHHHHHHH
Q 016864 192 -FTSTVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 192 -i~~~~~~~~l~~~~v~~~l~~ 212 (381)
+.+|||++++|......+++.
T Consensus 182 lLlLDEPts~LD~~~~~~l~~~ 203 (279)
T 2ihy_A 182 VLILDEPAAGLDFIARESLLSI 203 (279)
T ss_dssp EEEEESTTTTCCHHHHHHHHHH
T ss_pred EEEEeCCccccCHHHHHHHHHH
Confidence 788999999999877766543
No 194
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.45 E-value=2e-13 Score=125.51 Aligned_cols=89 Identities=25% Similarity=0.282 Sum_probs=66.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhc--ccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVIS--TART 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~--~~~~ 142 (381)
.+|+++|.+|||||||+|+|+|... .+++++++|.++....+.+++..+.++||||+.+.............. ....
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~ 116 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRT 116 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCC
Confidence 6999999999999999999999775 578899999999999999999999999999997654222111111111 1137
Q ss_pred cchhHHHHhcCC
Q 016864 143 CNCILIVLDAIK 154 (381)
Q Consensus 143 ~d~il~vvd~~~ 154 (381)
+|++++|++...
T Consensus 117 ~~~il~V~~~d~ 128 (262)
T 3def_A 117 IDVLLYVDRLDV 128 (262)
T ss_dssp ECEEEEEEESSC
T ss_pred CCEEEEEEcCCC
Confidence 888999866543
No 195
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.44 E-value=2.3e-13 Score=125.45 Aligned_cols=135 Identities=19% Similarity=0.134 Sum_probs=88.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeec---CcccccccccCCCcch
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLL---DLPGIIEGAKDGKGRG 133 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~---DtpG~~~~~~~~~~~~ 133 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-. ...|++.+.+
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~i~~v~q~~------ 87 (266)
T 2yz2_A 25 NVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-----------TSGDVLYDGERKKGYEIRRNIGIAFQYP------ 87 (266)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCHHHHGGGEEEECSSG------
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEECCEECchHHhhhhEEEEeccc------
Confidence 34444445589999999999999999999999877 899999999765310 0112222110
Q ss_pred hhhhcccCCcchhHHHHhc----CCChHHHHHHHHHHHhcccc----cccCcCcccceeeccccce---------eeecc
Q 016864 134 RQVISTARTCNCILIVLDA----IKPITHKRLIEKELEGFGIR----LNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 134 ~~~~~~~~~~d~il~vvd~----~~~~~~~~~i~~~l~~~~~~----~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
...+...++.-.+.-. .......+.+.+.++.+++. .++++..||+|+++|..++ +.+||
T Consensus 88 ---~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 164 (266)
T 2yz2_A 88 ---EDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDE 164 (266)
T ss_dssp ---GGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred ---hhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 0011122222111111 01112235567788888875 5788999999999998886 77789
Q ss_pred cCCCCCHHHHHHHHH
Q 016864 197 TNTNLDLDTVKAICS 211 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~ 211 (381)
|++++|......++.
T Consensus 165 Pts~LD~~~~~~l~~ 179 (266)
T 2yz2_A 165 PLVGLDREGKTDLLR 179 (266)
T ss_dssp TTTTCCHHHHHHHHH
T ss_pred ccccCCHHHHHHHHH
Confidence 999999877666554
No 196
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.44 E-value=1.5e-13 Score=131.44 Aligned_cols=140 Identities=15% Similarity=0.179 Sum_probs=98.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecC---cccccccccCCCcch
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLD---LPGIIEGAKDGKGRG 133 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~D---tpG~~~~~~~~~~~~ 133 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.. .+. .....++.
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~~~~~~~~----~~r~ig~v 87 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-----------STGELYFDDRLVASNGKLIVPP----EDRKIGMV 87 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC-----------SEEEEEETTEEEEETTEESSCG----GGSCEEEE
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECcccccccCCh----hhCCEEEE
Confidence 34444444589999999999999999999999888 8999999998764311 111 12234444
Q ss_pred hhhhcccCCcchhHHHHh---cCC-C-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 134 RQVISTARTCNCILIVLD---AIK-P-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 134 ~~~~~~~~~~d~il~vvd---~~~-~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
.|.....+..++.-.+.- ... + ....+.+.+.++.+++ ..++++..||+|++||..++ +.+|||
T Consensus 88 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP 167 (353)
T 1oxx_K 88 FQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEP 167 (353)
T ss_dssp ETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 554444555555443322 111 2 2335678888999998 57889999999999998887 778999
Q ss_pred CCCCCHHHHHHHHH
Q 016864 198 NTNLDLDTVKAICS 211 (381)
Q Consensus 198 ~~~l~~~~v~~~l~ 211 (381)
++++|......++.
T Consensus 168 ~s~LD~~~r~~l~~ 181 (353)
T 1oxx_K 168 FSNLDARMRDSARA 181 (353)
T ss_dssp TTTSCGGGHHHHHH
T ss_pred cccCCHHHHHHHHH
Confidence 99999876655544
No 197
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.44 E-value=3.8e-13 Score=129.41 Aligned_cols=140 Identities=17% Similarity=0.163 Sum_probs=98.5
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecC----cccccccccCCCcch
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLD----LPGIIEGAKDGKGRG 133 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~D----tpG~~~~~~~~~~~~ 133 (381)
+++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.-.. .+. .....++.
T Consensus 22 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~~~~~~~~~~~~~----~~r~ig~v 86 (372)
T 1g29_1 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-----------SRGQIYIGDKLVADPEKGIFVPP----KDRDIAMV 86 (372)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEEEEEGGGTEECCG----GGSSEEEE
T ss_pred eEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC-----------CccEEEECCEECccccccccCCH----hHCCEEEE
Confidence 3444444489999999999999999999999888 8999999998764310 111 12234444
Q ss_pred hhhhcccCCcchhHHH---HhcC-CC-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 134 RQVISTARTCNCILIV---LDAI-KP-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 134 ~~~~~~~~~~d~il~v---vd~~-~~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
.|.....+..++.-.+ .... .+ ....+.+.+.++.+++ ..++++..||+|++||..++ +.+|||
T Consensus 87 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP 166 (372)
T 1g29_1 87 FQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEP 166 (372)
T ss_dssp CSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECT
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 5544444555553332 2211 12 2334567888898988 57889999999999999887 788999
Q ss_pred CCCCCHHHHHHHHHH
Q 016864 198 NTNLDLDTVKAICSE 212 (381)
Q Consensus 198 ~~~l~~~~v~~~l~~ 212 (381)
++++|......++..
T Consensus 167 ~s~LD~~~r~~l~~~ 181 (372)
T 1g29_1 167 LSNLDAKLRVRMRAE 181 (372)
T ss_dssp TTTSCHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHH
Confidence 999999876666544
No 198
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.44 E-value=4.2e-13 Score=129.01 Aligned_cols=139 Identities=18% Similarity=0.157 Sum_probs=96.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+. +.+.. ....++..|.
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~--~~~~~----~r~ig~v~Q~ 91 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-----------TEGRIYFGDRDVT--YLPPK----DRNISMVFQS 91 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TSCGG----GGTEEEEEC-
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----------CceEEEECCEECC--CCChh----hCcEEEEecC
Confidence 34444444589999999999999999999999888 8999999998763 22211 1233444454
Q ss_pred hcccCCcchhHHHHhcC----CC-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIVLDAI----KP-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~----~~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
....+..++.-.+.-.. .+ ....+.+.+.++.+++ ..++++..||+|++||..++ +.+|||+++
T Consensus 92 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 171 (372)
T 1v43_A 92 YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171 (372)
T ss_dssp -----CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 44445555544443211 12 2234568888999998 57889999999999999887 788999999
Q ss_pred CCHHHHHHHHHH
Q 016864 201 LDLDTVKAICSE 212 (381)
Q Consensus 201 l~~~~v~~~l~~ 212 (381)
+|......++..
T Consensus 172 LD~~~r~~l~~~ 183 (372)
T 1v43_A 172 LDAKLRVAMRAE 183 (372)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999877666554
No 199
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.44 E-value=2.4e-14 Score=147.56 Aligned_cols=113 Identities=21% Similarity=0.386 Sum_probs=88.4
Q ss_pred cEEEEEcCCCCchHHHHHHH---hcccccc---------cc------cccceeeeecEEEEEcCEEeeecCccccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKL---TGTFSEV---------AS------YEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAK 127 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L---~g~~~~~---------~~------~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~ 127 (381)
++|||+|+.++|||||..+| +|..... .+ ..+.|+......+.|++..+.++||||..++.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~- 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL- 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH-
Confidence 57999999999999999998 4543221 22 23788888888899999999999999998864
Q ss_pred CCCcchhhhhcccCCcchhHHHHhcCCC-hHHHHHHHHHHHhcccccccCcCcccceeeccccc
Q 016864 128 DGKGRGRQVISTARTCNCILIVLDAIKP-ITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGI 190 (381)
Q Consensus 128 ~~~~~~~~~~~~~~~~d~il~vvd~~~~-~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~ 190 (381)
.+....++.+|..++|||+..+ ..+.+.+...+...++ +..+.+++.+|.+.
T Consensus 82 ------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~l-----p~i~~INKmDr~~a 134 (638)
T 3j25_A 82 ------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGI-----PTIFFINKIDQNGI 134 (638)
T ss_dssp ------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTC-----SCEECCEECCSSSC
T ss_pred ------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCC-----CeEEEEeccccccC
Confidence 5677778999999999999987 4566777777776666 55667777777543
No 200
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.44 E-value=1.6e-13 Score=142.59 Aligned_cols=83 Identities=19% Similarity=0.312 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhc---cccc---------ccc------cccceeeeecEEEEEcCEEeeecCccccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTG---TFSE---------VAS------YEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAK 127 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g---~~~~---------~~~------~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~ 127 (381)
.+|+|+|++|+|||||+|+|++ .... +.+ .+++|+......+.+++..+.++||||+.+..
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~- 89 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT- 89 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH-
Confidence 6999999999999999999984 3211 122 36788888888899999999999999986532
Q ss_pred CCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 128 DGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 128 ~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
......++.+|++++|+|+..+
T Consensus 90 ------~~~~~~l~~aD~~llVvDa~~g 111 (693)
T 2xex_A 90 ------VEVERSLRVLDGAVTVLDAQSG 111 (693)
T ss_dssp ------HHHHHHHHHCSEEEEEEETTTB
T ss_pred ------HHHHHHHHHCCEEEEEECCCCC
Confidence 3445566889999999999876
No 201
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.43 E-value=3.8e-13 Score=124.21 Aligned_cols=88 Identities=19% Similarity=0.229 Sum_probs=66.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh--cccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI--START 142 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~--~~~~~ 142 (381)
.+|+++|.+|+|||||+|+|+|... .+++++++|.++....+..++..+.++||||+.+............. ...+.
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~ 119 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKT 119 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCC
Confidence 6999999999999999999998774 56888999998888888888999999999998764321111101111 12347
Q ss_pred cchhHHHHhcC
Q 016864 143 CNCILIVLDAI 153 (381)
Q Consensus 143 ~d~il~vvd~~ 153 (381)
+|++++|+|..
T Consensus 120 ~d~il~v~~~d 130 (270)
T 1h65_A 120 IDVLLYVDRLD 130 (270)
T ss_dssp ECEEEEEEESS
T ss_pred CCEEEEEEeCC
Confidence 89999996654
No 202
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.43 E-value=4.6e-13 Score=128.09 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=98.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+.- .+. .....++..|.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~--~~~----~~r~ig~v~Q~ 83 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP-----------TSGEIYFDDVLVND--IPP----KYREVGMVFQN 83 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--SCG----GGTTEEEECSS
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC-----------CccEEEECCEECCC--CCh----hhCcEEEEecC
Confidence 34444444589999999999999999999999888 89999999987632 221 11233444454
Q ss_pred hcccCCcchhHHHHhc---CCC--hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIVLDA---IKP--ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~---~~~--~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
....+..++.-.+.-. ... ....+.+.+.++.+++ ..++++..||+|++||..++ +.+|||+++
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 84 YALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp CCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 4444555554333221 111 1223567888999998 57889999999999999887 788999999
Q ss_pred CCHHHHHHHHHH
Q 016864 201 LDLDTVKAICSE 212 (381)
Q Consensus 201 l~~~~v~~~l~~ 212 (381)
+|......+...
T Consensus 164 LD~~~r~~l~~~ 175 (359)
T 2yyz_A 164 LDANLRMIMRAE 175 (359)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999876665554
No 203
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.43 E-value=3.5e-13 Score=129.10 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=98.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+. +.+. .....++..|.
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~--~~~~----~~r~ig~v~Q~ 83 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP-----------TSGKIYFDEKDVT--ELPP----KDRNVGLVFQN 83 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TSCG----GGTTEEEECTT
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-----------CceEEEECCEECC--cCCH----hHCcEEEEecC
Confidence 34444444589999999999999999999999888 8999999998763 2221 11233444454
Q ss_pred hcccCCcchhHHH---HhcC-CC-hHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCC
Q 016864 137 ISTARTCNCILIV---LDAI-KP-ITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~~-~~-~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
....+..++.-.+ .... .+ ....+.+.+.++.+++ ..++++..||+|++||..++ +.+|||+++
T Consensus 84 ~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (362)
T 2it1_A 84 WALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSN 163 (362)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGG
T ss_pred cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 4444555553332 2211 12 2334668888999998 57889999999999999887 788999999
Q ss_pred CCHHHHHHHHHH
Q 016864 201 LDLDTVKAICSE 212 (381)
Q Consensus 201 l~~~~v~~~l~~ 212 (381)
+|......++..
T Consensus 164 LD~~~r~~l~~~ 175 (362)
T 2it1_A 164 LDALLRLEVRAE 175 (362)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999876666554
No 204
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.43 E-value=6.5e-13 Score=121.47 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=79.7
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVI 137 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~ 137 (381)
+++....+..++|+|+||||||||+++|+|...+ ..|.+.+.. .+.+ +.+.+
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~~-~i~~------v~q~~---------- 75 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-----------IQGKIEVYQ-SIGF------VPQFF---------- 75 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC-----------SEEEEEECS-CEEE------ECSCC----------
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEEec-cEEE------EcCCC----------
Confidence 3444444489999999999999999999999877 778876421 2222 21110
Q ss_pred cccCCcch---hHHHHhc------CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeeccc
Q 016864 138 STARTCNC---ILIVLDA------IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVT 197 (381)
Q Consensus 138 ~~~~~~d~---il~vvd~------~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~ 197 (381)
......++ +.+.... .......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||
T Consensus 76 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 155 (253)
T 2nq2_C 76 SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEP 155 (253)
T ss_dssp CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSS
T ss_pred ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 00011111 1111110 0123334567788888888 46788999999999998776 666777
Q ss_pred CCCCCHHHHHHHHH
Q 016864 198 NTNLDLDTVKAICS 211 (381)
Q Consensus 198 ~~~l~~~~v~~~l~ 211 (381)
++++|......+++
T Consensus 156 ts~LD~~~~~~l~~ 169 (253)
T 2nq2_C 156 TSALDLANQDIVLS 169 (253)
T ss_dssp STTSCHHHHHHHHH
T ss_pred cccCCHHHHHHHHH
Confidence 77777766555443
No 205
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.42 E-value=3.9e-13 Score=139.62 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=59.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhc---cccc---------ccc------cccceeeeecEEEEEcCEEeeecCccccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTG---TFSE---------VAS------YEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAK 127 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g---~~~~---------~~~------~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~ 127 (381)
.+|+|+|++|+|||||+++|+. .... +.+ ..++|+......+.+++..+.++||||..+..
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~- 91 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFT- 91 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCH-
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchH-
Confidence 6999999999999999999973 2211 111 45778888888889999999999999986532
Q ss_pred CCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 128 DGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 128 ~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
......++.+|++++|+|+.++
T Consensus 92 ------~~~~~~l~~aD~~ilVvDa~~g 113 (691)
T 1dar_A 92 ------IEVERSMRVLDGAIVVFDSSQG 113 (691)
T ss_dssp ------HHHHHHHHHCSEEEEEEETTTC
T ss_pred ------HHHHHHHHHCCEEEEEEECCCC
Confidence 3444566889999999999876
No 206
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.42 E-value=2.1e-13 Score=130.01 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=97.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|..+. +.+.. ....++..|.
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~~~g~~i~--~~~~~----~r~ig~v~Q~ 80 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-----------DSGRILLDGKDVT--DLSPE----KHDIAFVYQN 80 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TSCHH----HHTCEEECTT
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC-----------CCcEEEECCEECC--CCchh----hCcEEEEecC
Confidence 44455555589999999999999999999999888 8999999997753 22211 1223444444
Q ss_pred hcccCCcchhHHH---HhcC-CChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCC
Q 016864 137 ISTARTCNCILIV---LDAI-KPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNL 201 (381)
Q Consensus 137 ~~~~~~~d~il~v---vd~~-~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l 201 (381)
....+..++.-.+ .... .+. . +.+.+.++.+++ ..++++..||+|++||..++ +.+|||++++
T Consensus 81 ~~l~~~ltv~enl~~~~~~~~~~~-~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~L 158 (348)
T 3d31_A 81 YSLFPHMNVKKNLEFGMRMKKIKD-P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL 158 (348)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCCCC-H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred cccCCCCCHHHHHHHHHHHcCCCH-H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 4444554443222 1111 111 2 677888999998 57889999999999999887 7889999999
Q ss_pred CHHHHHHHHHH
Q 016864 202 DLDTVKAICSE 212 (381)
Q Consensus 202 ~~~~v~~~l~~ 212 (381)
|......++..
T Consensus 159 D~~~~~~l~~~ 169 (348)
T 3d31_A 159 DPRTQENAREM 169 (348)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99877666554
No 207
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.41 E-value=8.7e-13 Score=120.45 Aligned_cols=141 Identities=21% Similarity=0.188 Sum_probs=85.0
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcc--cccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGT--FSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~--~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
+++....+..++|+|+||||||||+++|+|. ..+ ..|.+.++|.++.-.+.... ...+.++..|
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p-----------~~G~I~~~g~~~~~~~~~~~---~~~~i~~v~q 87 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-----------ERGEILLDGENILELSPDER---ARKGLFLAFQ 87 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE-----------EEEEEEETTEECTTSCHHHH---HHTTBCCCCC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CceEEEECCEECCCCCHHHH---HhCcEEEecc
Confidence 3444444489999999999999999999997 445 88999999977532211000 0111112222
Q ss_pred hhcccCCcch---hHHHHh---cC-CC-hHHHHHHHHHHHhccc---ccccCcCc-ccceeeccccce---------eee
Q 016864 136 VISTARTCNC---ILIVLD---AI-KP-ITHKRLIEKELEGFGI---RLNKQPPN-LTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 136 ~~~~~~~~d~---il~vvd---~~-~~-~~~~~~i~~~l~~~~~---~~~~~~~~-ls~~~~~r~~~~---------i~~ 194 (381)
........++ +.+... .. .+ ....+.+.+.++.+++ ..++++.. ||+|++||..++ +.+
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllL 167 (250)
T 2d2e_A 88 YPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVL 167 (250)
T ss_dssp CCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEE
T ss_pred CCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2222222222 222111 11 11 2234567778888887 25677888 999999999887 888
Q ss_pred cccCCCCCHHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~~ 212 (381)
|||++++|......+++.
T Consensus 168 DEPts~LD~~~~~~l~~~ 185 (250)
T 2d2e_A 168 DETDSGLDIDALKVVARG 185 (250)
T ss_dssp ECGGGTTCHHHHHHHHHH
T ss_pred eCCCcCCCHHHHHHHHHH
Confidence 999999999877666543
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.41 E-value=7.2e-14 Score=133.20 Aligned_cols=50 Identities=18% Similarity=0.154 Sum_probs=36.3
Q ss_pred ccEEEEEecCCcCC-HHH----HHHHh------c------CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 242 MPCIYVINKIDQIT-LEE----LEILD------K------LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~-~~~----l~~l~------~------~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.|.++++||+|+.. .+. .+.+. . .++++++||.++.|+++|.+.+.+.+.
T Consensus 194 ~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 194 LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 47788899999753 221 12221 1 467899999999999999999988654
No 209
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.40 E-value=1.1e-13 Score=137.64 Aligned_cols=84 Identities=19% Similarity=0.158 Sum_probs=52.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc-------------------------cc------ccccceeeeecEEEEEcCEEe
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE-------------------------VA------SYEFTTLTCIPGVITYRGAKI 114 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~-------------------------~~------~~~~tT~~~~~g~i~~~g~~i 114 (381)
.+|+++|++|+|||||+++|++.... +. ...++|++.....+.+++..+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~ 123 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 123 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEE
Confidence 68999999999999999999642110 01 135778888777788889999
Q ss_pred eecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCCh
Q 016864 115 QLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPI 156 (381)
Q Consensus 115 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~ 156 (381)
.++||||..+.. ..+...+..+|++++|+|+.++.
T Consensus 124 ~iiDtPGh~~f~-------~~~~~~~~~aD~~ilVvDa~~g~ 158 (467)
T 1r5b_A 124 SLLDAPGHKGYV-------TNMINGASQADIGVLVISARRGE 158 (467)
T ss_dssp EECCCCC------------------TTSCSEEEEEEECSTTH
T ss_pred EEEECCCcHHHH-------HHHHhhcccCCEEEEEEeCCcCc
Confidence 999999986543 34445568899999999998763
No 210
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.39 E-value=9.9e-14 Score=132.52 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=37.8
Q ss_pred ccEEEEEecCCcCCHHHH----HHHh------c------CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 242 MPCIYVINKIDQITLEEL----EILD------K------LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~l----~~l~------~------~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+|.++|+||+|+...... +.+. . .++++++||+++.|+++|.+.+.+.+.
T Consensus 195 ~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 195 VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 589999999999865322 1221 1 346789999999999999999987653
No 211
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.4e-12 Score=119.48 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=37.9
Q ss_pred ccEEEEEecCCcCCHHHH---HHHhc---CCCeeeecccccccHHHHHHHHHHHc
Q 016864 242 MPCIYVINKIDQITLEEL---EILDK---LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~l---~~l~~---~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
.|+++|+||+|+.....+ +.+.. ..+++.+||+++.|++++++.+.+.+
T Consensus 199 ~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 199 KPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 699999999999764333 23321 34688999999999999999988754
No 212
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.38 E-value=5.6e-13 Score=122.47 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=85.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCc-chhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKG-RGRQ 135 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~-~~~~ 135 (381)
++++... +..++|+|+||||||||+++|+|.. | ..|.+.++|.++.-. .. ....+ +..|
T Consensus 23 ~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-----------~~G~I~~~g~~~~~~------~~-~~~i~~~v~Q 82 (263)
T 2pjz_A 23 NINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P-----------YSGNIFINGMEVRKI------RN-YIRYSTNLPE 82 (263)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-----------CEEEEEETTEEGGGC------SC-CTTEEECCGG
T ss_pred eeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-----------CCcEEEECCEECcch------HH-hhheEEEeCC
Confidence 3444455 5899999999999999999999998 8 899999999765311 00 11122 2222
Q ss_pred hhcccCCcchhHHH---HhcCCChHHHHHHHHHHHhcccc---cccCcCcccceeeccccce---------eeecccCCC
Q 016864 136 VISTARTCNCILIV---LDAIKPITHKRLIEKELEGFGIR---LNKQPPNLTFRKKDKGGIN---------FTSTVTNTN 200 (381)
Q Consensus 136 ~~~~~~~~d~il~v---vd~~~~~~~~~~i~~~l~~~~~~---~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~ 200 (381)
.... ..++.-.+ ..... ...+.+.+.++.+++. .++++..||+|+++|..++ +.+|||+++
T Consensus 83 ~~~l--~~tv~enl~~~~~~~~--~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~ 158 (263)
T 2pjz_A 83 AYEI--GVTVNDIVYLYEELKG--LDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158 (263)
T ss_dssp GSCT--TSBHHHHHHHHHHHTC--CCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred CCcc--CCcHHHHHHHhhhhcc--hHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 2211 22332221 11111 1234567778888875 6788999999999998876 667788888
Q ss_pred CCHHHHHHHHH
Q 016864 201 LDLDTVKAICS 211 (381)
Q Consensus 201 l~~~~v~~~l~ 211 (381)
+|......+++
T Consensus 159 LD~~~~~~l~~ 169 (263)
T 2pjz_A 159 VDAARRHVISR 169 (263)
T ss_dssp CCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 88776655444
No 213
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.37 E-value=1.5e-12 Score=119.92 Aligned_cols=142 Identities=18% Similarity=0.236 Sum_probs=88.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhccc--ccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTF--SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~--~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
++++....+..++|+|+||||||||+++|+|.. .+ ..|.+.++|.++.-.+.... ...+.++..
T Consensus 38 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p-----------~~G~I~~~g~~i~~~~~~~~---~~~~i~~v~ 103 (267)
T 2zu0_C 38 GLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-----------TGGTVEFKGKDLLALSPEDR---AGEGIFMAF 103 (267)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE-----------EEEEEEETTEEGGGSCHHHH---HHHTEEEEC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CCeEEEECCEECCcCCHHHH---hhCCEEEEc
Confidence 344444455899999999999999999999973 34 78999999976532211000 000111112
Q ss_pred hhhcccCCcchhH---HHHh------cC--CC-hHHHHHHHHHHHhcccc---cccCcC-cccceeeccccce-------
Q 016864 135 QVISTARTCNCIL---IVLD------AI--KP-ITHKRLIEKELEGFGIR---LNKQPP-NLTFRKKDKGGIN------- 191 (381)
Q Consensus 135 ~~~~~~~~~d~il---~vvd------~~--~~-~~~~~~i~~~l~~~~~~---~~~~~~-~ls~~~~~r~~~~------- 191 (381)
|........++.. +..+ .. .. ....+.+.+.++.+++. .++++. .||+|+++|..++
T Consensus 104 Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p 183 (267)
T 2zu0_C 104 QYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEP 183 (267)
T ss_dssp SSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCC
T ss_pred cCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCC
Confidence 2111222222211 1111 00 01 12235677888888882 355665 4999999999887
Q ss_pred --eeecccCCCCCHHHHHHHHHH
Q 016864 192 --FTSTVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 192 --i~~~~~~~~l~~~~v~~~l~~ 212 (381)
+.+|||++++|......+++.
T Consensus 184 ~lLlLDEPts~LD~~~~~~l~~~ 206 (267)
T 2zu0_C 184 ELCILDESDSGLDIDALKVVADG 206 (267)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHH
Confidence 788999999999877766554
No 214
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.37 E-value=7e-13 Score=141.48 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=58.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc----------------cccccccceeeeecEEEEEcCEEeeecCcccccccccCC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS----------------EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDG 129 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~----------------~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~ 129 (381)
.+|+++|++|+|||||+++|++... +.....++|++.....+...+..+.++||||..+..
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~--- 373 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV--- 373 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH---
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH---
Confidence 6899999999999999999987421 011245677776555556567899999999987642
Q ss_pred CcchhhhhcccCCcchhHHHHhcCCC
Q 016864 130 KGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 130 ~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
..+...+..+|++++|+|+.++
T Consensus 374 ----~~mi~gas~AD~aILVVDAtdG 395 (1289)
T 3avx_A 374 ----KNMITGAAQMDGAILVVAATDG 395 (1289)
T ss_dssp ----HHHHHTSCCCSEEEEEEETTTC
T ss_pred ----HHHHHHHhhCCEEEEEEcCCcc
Confidence 4455567899999999999875
No 215
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.37 E-value=1.8e-13 Score=131.30 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=34.6
Q ss_pred ccEEEEEecCCcCCHHH--HHHHh--------cCCCeeeecccccccHHHHHHHHHH
Q 016864 242 MPCIYVINKIDQITLEE--LEILD--------KLPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~--l~~l~--------~~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
.|+++|+||+|+..... .+.+. .+.+++.+||+++.|+++|.+.+.+
T Consensus 198 ~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 198 QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp TTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 69999999999975322 12111 1235788999999999999988876
No 216
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.36 E-value=1.5e-13 Score=143.29 Aligned_cols=113 Identities=16% Similarity=0.294 Sum_probs=80.0
Q ss_pred cEEEEEcCCCCchHHHHHHHh---ccccc---------cc------ccccceeeeecEEEEEc-------CEEeeecCcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLT---GTFSE---------VA------SYEFTTLTCIPGVITYR-------GAKIQLLDLP 120 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~---g~~~~---------~~------~~~~tT~~~~~g~i~~~-------g~~i~l~Dtp 120 (381)
++|||+|+..+|||||..+|. |.... .. -..+.|+....-.+.|. +..+.++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 689999999999999999984 43211 11 13477887777778775 4789999999
Q ss_pred cccccccCCCcchhhhhcccCCcchhHHHHhcCCC-hHHHHHHHHHHHhcccccccCcCcccceeeccccc
Q 016864 121 GIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP-ITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGI 190 (381)
Q Consensus 121 G~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~-~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~ 190 (381)
|..++. .+....++-+|..++|||+..+ ..+.+.+...+...++ +..+.+++.+|.+.
T Consensus 94 GHvDF~-------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~l-----p~i~~iNKiDr~~a 152 (709)
T 4fn5_A 94 GHVDFT-------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGV-----PRIVYVNKMDRQGA 152 (709)
T ss_dssp SCTTCH-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTC-----CEEEEEECSSSTTC
T ss_pred CCcccH-------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCC-----CeEEEEccccccCc
Confidence 998865 5667778999999999999987 5567777777766666 55666777777443
No 217
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.36 E-value=3.6e-13 Score=139.61 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=35.5
Q ss_pred ccEEEEEecCCcCCHHH--HHHHh--------cCCCeeeecccccccHHHHHHHHHH
Q 016864 242 MPCIYVINKIDQITLEE--LEILD--------KLPHYCPVSAHLEWNLDGLLEKIWE 288 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~--l~~l~--------~~~~~v~vSa~~~~gl~~L~~~i~~ 288 (381)
+|+|+|+||+|+..... ...+. .+.+++++||.++.|+++|.+.+.+
T Consensus 218 ~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 218 QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp SSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred CCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 69999999999985432 11111 2346889999999999999998876
No 218
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.35 E-value=1.5e-12 Score=118.71 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=84.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+...+. ...++..|.
T Consensus 27 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~i~g~~~~~~~~~~~~----~~i~~v~Q~ 91 (247)
T 2ff7_A 27 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-----------ENGQVLIDGHDLALADPNWLR----RQVGVVLQD 91 (247)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEETTTSCHHHHH----HHEEEECSS
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCHHHHH----hcEEEEeCC
Confidence 33444444589999999999999999999999887 899999999775322111100 001111121
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc-------------ccccCcCcccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI-------------RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
..... .++.-.+.-. .+....+.+...++.+++ ...+++..||+|+++|..++ +.+
T Consensus 92 ~~l~~-~tv~enl~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllL 169 (247)
T 2ff7_A 92 NVLLN-RSIIDNISLA-NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIF 169 (247)
T ss_dssp CCCTT-SBHHHHHTTT-CTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred Ccccc-ccHHHHHhcc-CCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11111 1222222111 111112334444555554 23345689999999999887 788
Q ss_pred cccCCCCCHHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~~ 212 (381)
|||++++|......+++.
T Consensus 170 DEPts~LD~~~~~~i~~~ 187 (247)
T 2ff7_A 170 DEATSALDYESEHVIMRN 187 (247)
T ss_dssp CCCCSCCCHHHHHHHHHH
T ss_pred eCCcccCCHHHHHHHHHH
Confidence 999999999877766553
No 219
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.34 E-value=1.9e-13 Score=131.35 Aligned_cols=50 Identities=24% Similarity=0.160 Sum_probs=38.4
Q ss_pred ccEEEEEecCCcCCHHHH----HHHh-----------c-CCCeeeecccccccHHHHHHHHHHHcC
Q 016864 242 MPCIYVINKIDQITLEEL----EILD-----------K-LPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~l----~~l~-----------~-~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+|.++|+||+|+...... ..+. . ..+++++||+++.|+++|.+.+.+.+.
T Consensus 218 ~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 218 LADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 599999999999754321 1111 1 257999999999999999999988764
No 220
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.34 E-value=1.8e-12 Score=134.26 Aligned_cols=84 Identities=24% Similarity=0.290 Sum_probs=64.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccc------------cc------cccceeeeecEEEEEcCEEeeecCcccccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEV------------AS------YEFTTLTCIPGVITYRGAKIQLLDLPGIIEGA 126 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~------------~~------~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~ 126 (381)
..+|+|+|++|+|||||+++|++....+ .+ ..+.|..+....+.+.+..+.++||||..+..
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 3799999999999999999998543221 11 23567777777788888999999999986542
Q ss_pred cCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 127 KDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 127 ~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
......++.+|.+++|+|+..+
T Consensus 89 -------~~~~~~l~~ad~~ilVvD~~~g 110 (665)
T 2dy1_A 89 -------GEIRGALEAADAALVAVSAEAG 110 (665)
T ss_dssp -------HHHHHHHHHCSEEEEEEETTTC
T ss_pred -------HHHHHHHhhcCcEEEEEcCCcc
Confidence 3445566789999999998765
No 221
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.30 E-value=3.5e-12 Score=117.76 Aligned_cols=140 Identities=15% Similarity=0.116 Sum_probs=86.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.-.+..-+. ..+++..|.
T Consensus 37 ~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~~----~~i~~v~Q~ 101 (271)
T 2ixe_A 37 GLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP-----------TGGKVLLDGEPLVQYDHHYLH----TQVAAVGQE 101 (271)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEGGGBCHHHHH----HHEEEECSS
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCCEEEECCEEcccCCHHHHh----ccEEEEecC
Confidence 44555555589999999999999999999999887 889999999776322111000 001111111
Q ss_pred hcccCCcchhHHHHhcC--CCh-HH------HHHHHHHHHhc--cc--ccccCcCcccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVLDAI--KPI-TH------KRLIEKELEGF--GI--RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~--~~~-~~------~~~i~~~l~~~--~~--~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
..... .++.-.+.-.. ... .. ...+.+.++.+ ++ ...+++..||+|+++|..++ +.+
T Consensus 102 ~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllL 180 (271)
T 2ixe_A 102 PLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLIL 180 (271)
T ss_dssp CCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred Ccccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11111 13322221110 011 11 11233445555 44 45678899999999999887 788
Q ss_pred cccCCCCCHHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~~ 212 (381)
|||++++|......++..
T Consensus 181 DEPts~LD~~~~~~i~~~ 198 (271)
T 2ixe_A 181 DNATSALDAGNQLRVQRL 198 (271)
T ss_dssp ESTTTTCCHHHHHHHHHH
T ss_pred ECCccCCCHHHHHHHHHH
Confidence 999999999877665553
No 222
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.30 E-value=5.9e-12 Score=114.44 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=40.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEee
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQ 115 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~ 115 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|.++.
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 20 DISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-----------TAGEITIDGQPID 67 (243)
T ss_dssp EEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC-----------SBSCEEETTEEST
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhh
Confidence 44555555589999999999999999999999877 8899999997753
No 223
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.6e-12 Score=113.09 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=51.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccc---cccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccC
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEV---ASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTAR 141 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~---~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 141 (381)
..+|+++|++|||||||+|+|++..... +..|.+|.+. .+..+.++||||........ .......+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~~---~~~~~~~~~ 117 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRYKL---SDYLKTRAK 117 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------CCTTCSEEEETTCCBSSCCH---HHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cCCeEEEEECCCCchHHHHH---HHHHHhhcc
Confidence 3799999999999999999999876322 2233333322 56788999999986543211 111111234
Q ss_pred CcchhHHHHhcC
Q 016864 142 TCNCILIVLDAI 153 (381)
Q Consensus 142 ~~d~il~vvd~~ 153 (381)
.+|++++|+|+.
T Consensus 118 ~~~~~i~v~d~~ 129 (193)
T 2ged_A 118 FVKGLIFMVDST 129 (193)
T ss_dssp GEEEEEEEEETT
T ss_pred cCCEEEEEEECC
Confidence 589999999998
No 224
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.28 E-value=3.1e-12 Score=119.91 Aligned_cols=139 Identities=19% Similarity=0.153 Sum_probs=85.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.|.++|.++.-++...+.. .+++..|.
T Consensus 72 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~G~~i~~~~~~~~r~----~i~~v~Q~ 136 (306)
T 3nh6_A 72 DVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI-----------SSGCIRIDGQDISQVTQASLRS----HIGVVPQD 136 (306)
T ss_dssp EEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC-----------SEEEEEETTEETTSBCHHHHHH----TEEEECSS
T ss_pred eeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-----------CCcEEEECCEEcccCCHHHHhc----ceEEEecC
Confidence 34444555589999999999999999999999888 8999999998775443221111 11122222
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc-------------ccccCcCcccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI-------------RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
...+ ..++.-.+.-+. +....+.+...++..++ .+.+....||+|++||.+++ +++
T Consensus 137 ~~lf-~~Tv~eNi~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlL 214 (306)
T 3nh6_A 137 TVLF-NDTIADNIRYGR-VTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILL 214 (306)
T ss_dssp CCCC-SEEHHHHHHTTS-TTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CccC-cccHHHHHHhhc-ccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 1111 123322222111 11111223333333322 34455678999999999887 888
Q ss_pred cccCCCCCHHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~~ 212 (381)
|||++++|......++..
T Consensus 215 DEPts~LD~~~~~~i~~~ 232 (306)
T 3nh6_A 215 DEATSALDTSNERAIQAS 232 (306)
T ss_dssp ECCSSCCCHHHHHHHHHH
T ss_pred ECCcccCCHHHHHHHHHH
Confidence 999999999876665543
No 225
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.25 E-value=3.3e-12 Score=129.25 Aligned_cols=92 Identities=24% Similarity=0.251 Sum_probs=59.6
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccc---cccccccceeeee--c---EEE----------------------------
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFS---EVASYEFTTLTCI--P---GVI---------------------------- 107 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~---~~~~~~~tT~~~~--~---g~i---------------------------- 107 (381)
+..+|+++|.+|||||||+|+|+|... .+++.|.||+... . +.+
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 447999999999999999999999875 4678887765210 0 000
Q ss_pred ---EEcC---EEeeecCcccccccccCCCc----chhhhhcccCCcchhHHHHhcCCC
Q 016864 108 ---TYRG---AKIQLLDLPGIIEGAKDGKG----RGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 108 ---~~~g---~~i~l~DtpG~~~~~~~~~~----~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.+.+ ..+.++||||+......... +.......+..+|++++|+|+...
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~ 201 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL 201 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC
Confidence 0000 36889999999763322111 112223346789999999999763
No 226
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.25 E-value=1.8e-11 Score=117.68 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
++|++||.+|||||||+|+|+|...
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc
Confidence 6999999999999999999999653
No 227
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.25 E-value=1.3e-11 Score=111.67 Aligned_cols=128 Identities=17% Similarity=0.216 Sum_probs=79.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|. + |++.+.+.
T Consensus 23 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~-i------~~v~Q~~~-------- 76 (237)
T 2cbz_A 23 GITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-----------VEGHVAIKGS-V------AYVPQQAW-------- 76 (237)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE-----------EEEEEEECSC-E------EEECSSCC--------
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCE-E------EEEcCCCc--------
Confidence 44444445589999999999999999999999877 8899999872 2 22221110
Q ss_pred hcccCCcchhHHHHhcCC-ChHHHHHHHHH---HHhccc-------ccccCcCcccceeeccccce---------eeecc
Q 016864 137 ISTARTCNCILIVLDAIK-PITHKRLIEKE---LEGFGI-------RLNKQPPNLTFRKKDKGGIN---------FTSTV 196 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~-~~~~~~~i~~~---l~~~~~-------~~~~~~~~ls~~~~~r~~~~---------i~~~~ 196 (381)
+...++.-.+.-... .....+.+.+. ++.++. ...+++..||+|+++|..++ +.+||
T Consensus 77 ---~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 153 (237)
T 2cbz_A 77 ---IQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153 (237)
T ss_dssp ---CCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred ---CCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 011111111110000 01111122221 111221 24677899999999999886 78899
Q ss_pred cCCCCCHHHHHHHHHHh
Q 016864 197 TNTNLDLDTVKAICSEY 213 (381)
Q Consensus 197 ~~~~l~~~~v~~~l~~~ 213 (381)
|++++|......+++.+
T Consensus 154 Pts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 154 PLSAVDAHVGKHIFENV 170 (237)
T ss_dssp TTTTSCHHHHHHHHHHT
T ss_pred cccccCHHHHHHHHHHH
Confidence 99999998877776654
No 228
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.24 E-value=6.2e-12 Score=111.97 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=37.7
Q ss_pred ccEEEEEecCCcCCH-----HHH-HHHh---cCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 242 MPCIYVINKIDQITL-----EEL-EILD---KLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~-----~~l-~~l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.|.++|+||+|+... +.+ +.+. ...+++++||+++.|++++++.+.+.+.
T Consensus 155 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 155 VADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred cCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 599999999998632 222 1222 2346899999999999999999988764
No 229
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.22 E-value=3.9e-12 Score=128.29 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=79.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+..++|+|+||||||||+++|+|...+ ..|.+.+++..+.++..- ... .......+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~~~i~~~~q~-~~~---~~~~tv~~~------- 350 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITA-----------DEGSVTPEKQILSYKPQR-IFP---NYDGTVQQY------- 350 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SBCCEESSCCCEEEECSS-CCC---CCSSBHHHH-------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCeeeEeechh-ccc---ccCCCHHHH-------
Confidence 3489999999999999999999999887 778877666554433110 000 000001111
Q ss_pred chhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHHHHHHHHH
Q 016864 144 NCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 144 d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~v~~~l~ 211 (381)
+... ...........+.+.++.+++ ..++++..||+|++||..++ +.+|||++++|......+++
T Consensus 351 --l~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ 426 (538)
T 3ozx_A 351 --LENA-SKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAK 426 (538)
T ss_dssp --HHHH-CSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred --HHHh-hhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 1111 000000112345566777777 57788999999999998887 77899999999877665544
No 230
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.22 E-value=3.1e-11 Score=110.77 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=82.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ .|.+.++|.++.-.+...+ ....++..|.
T Consensus 38 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------------~G~I~i~g~~i~~~~~~~~----~~~i~~v~Q~ 101 (260)
T 2ghi_A 38 SINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA------------EGDIKIGGKNVNKYNRNSI----RSIIGIVPQD 101 (260)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC------------EEEEEETTEEGGGBCHHHH----HTTEEEECSS
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC------------CeEEEECCEEhhhcCHHHH----hccEEEEcCC
Confidence 44555555589999999999999999999997533 5999999877532211100 1111122222
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc-------------ccccCcCcccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI-------------RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
..... .++.-.+.-.... ...+.+.+.++.+++ ...+++..||+|+++|..++ +.+
T Consensus 102 ~~l~~-~tv~enl~~~~~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 179 (260)
T 2ghi_A 102 TILFN-ETIKYNILYGKLD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179 (260)
T ss_dssp CCCCS-EEHHHHHHTTCTT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred Ccccc-cCHHHHHhccCCC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 11121 2332222111111 112234444444443 12456789999999999887 788
Q ss_pred cccCCCCCHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICS 211 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~ 211 (381)
|||++++|......+++
T Consensus 180 DEPts~LD~~~~~~i~~ 196 (260)
T 2ghi_A 180 DEATSSLDSKTEYLFQK 196 (260)
T ss_dssp ECCCCTTCHHHHHHHHH
T ss_pred ECccccCCHHHHHHHHH
Confidence 99999999987666544
No 231
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.22 E-value=4.2e-11 Score=107.79 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=76.0
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|. +. +..+.+.
T Consensus 26 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~-i~------~v~q~~~-------- 79 (229)
T 2pze_A 26 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----------SEGKIKHSGR-IS------FCSQFSW-------- 79 (229)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEECSC-EE------EECSSCC--------
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-----------CccEEEECCE-EE------EEecCCc--------
Confidence 33444444489999999999999999999999887 8899999872 22 2221110
Q ss_pred hcccCCcchhHHHHhcC-CChHHHHHHHHHHHhccc-------------ccccCcCcccceeeccccce---------ee
Q 016864 137 ISTARTCNCILIVLDAI-KPITHKRLIEKELEGFGI-------------RLNKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~-~~~~~~~~i~~~l~~~~~-------------~~~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
... .++.-.+.-.. .... .....++.+++ ...++...||+|+++|..++ +.
T Consensus 80 --~~~-~tv~enl~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lll 153 (229)
T 2pze_A 80 --IMP-GTIKENIIFGVSYDEY---RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL 153 (229)
T ss_dssp --CCS-BCHHHHHHTTSCCCHH---HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEE
T ss_pred --ccC-CCHHHHhhccCCcChH---HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 001 11111111110 0111 11112222222 12334679999999999886 78
Q ss_pred ecccCCCCCHHHHHHHHHH
Q 016864 194 STVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~~l~~ 212 (381)
+|||++++|......+++.
T Consensus 154 LDEPts~LD~~~~~~i~~~ 172 (229)
T 2pze_A 154 LDSPFGYLDVLTEKEIFES 172 (229)
T ss_dssp EESTTTTSCHHHHHHHHHH
T ss_pred EECcccCCCHHHHHHHHHH
Confidence 8999999999887776654
No 232
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=118.05 Aligned_cols=59 Identities=27% Similarity=0.283 Sum_probs=31.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccccccc---------ccceeeeecEEEEEcCE--EeeecCcccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASY---------EFTTLTCIPGVITYRGA--KIQLLDLPGIIE 124 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~---------~~tT~~~~~g~i~~~g~--~i~l~DtpG~~~ 124 (381)
.+|+++|++|+|||||+|+|.+.......+ +..+.+.....+.+++. .+.++||||+.+
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 578999999999999999998865433222 22222322223344454 688999999854
No 233
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.20 E-value=3e-12 Score=129.35 Aligned_cols=119 Identities=15% Similarity=0.216 Sum_probs=71.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+.+++|+|+||||||||+++|+|...+ ..|.+.+ ...+ |++.+... .....
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~i~~-~~~i------~~v~Q~~~----------~~~~~ 362 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEP-----------TEGKIEW-DLTV------AYKPQYIK----------ADYEG 362 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SBCCCCC-CCCE------EEECSSCC----------CCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEE-CceE------EEEecCCc----------CCCCC
Confidence 3489999999999999999999998877 4555543 1122 22222110 00111
Q ss_pred chhHHHHhc-CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHHHHHHHH
Q 016864 144 NCILIVLDA-IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDTVKAIC 210 (381)
Q Consensus 144 d~il~vvd~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~v~~~l 210 (381)
++...+... .......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++|......++
T Consensus 363 tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~ 441 (538)
T 1yqt_A 363 TVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 441 (538)
T ss_dssp BHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred cHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 221111110 0001123456677888888 56788999999999997765 5556666666665544443
No 234
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.19 E-value=5.5e-12 Score=128.86 Aligned_cols=120 Identities=14% Similarity=0.210 Sum_probs=72.6
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTC 143 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 143 (381)
.+..++|+|+||||||||+++|+|...+ ..|.+.+. ..+ |++.+... .....
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~-~~i------~~v~Q~~~----------~~~~~ 432 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEP-----------TEGKVEWD-LTV------AYKPQYIK----------AEYEG 432 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SBSCCCCC-CCE------EEECSSCC----------CCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEEe-eEE------EEEecCcc----------CCCCC
Confidence 3489999999999999999999998776 44554431 122 22221110 00111
Q ss_pred chhHHHHhc-CCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHHHHHHHHH
Q 016864 144 NCILIVLDA-IKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 144 d~il~vvd~-~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~v~~~l~ 211 (381)
++..++... .......+.+.+.++.+++ ..++++..||+|+++|..++ +.+|||++++|......+++
T Consensus 433 tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~ 512 (607)
T 3bk7_A 433 TVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 512 (607)
T ss_dssp BHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred cHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHH
Confidence 221111100 0001123456677888888 56788999999999997776 66677777777765554433
No 235
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.17 E-value=4.3e-11 Score=122.26 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=85.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||++.|+|...| ..|.+.++|.++.-.+...+. ...+...|.
T Consensus 361 ~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~~~~----~~i~~v~Q~ 425 (582)
T 3b5x_A 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV-----------DSGSICLDGHDVRDYKLTNLR----RHFALVSQN 425 (582)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCCEEEECCEEhhhCCHHHHh----cCeEEEcCC
Confidence 34444444589999999999999999999999887 889999999876433221111 111122222
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc-------------ccccCcCcccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI-------------RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
..... .++.-.+.-...+....+.+.+.++..++ ...++...||+|++||.+++ +.+
T Consensus 426 ~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illl 504 (582)
T 3b5x_A 426 VHLFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLIL 504 (582)
T ss_pred Ccccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 11111 12222221111011123345555555555 12334578999999999887 788
Q ss_pred cccCCCCCHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICS 211 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~ 211 (381)
|||++++|.+....+.+
T Consensus 505 DEpts~LD~~~~~~i~~ 521 (582)
T 3b5x_A 505 DEATSALDTESERAIQA 521 (582)
T ss_pred ECccccCCHHHHHHHHH
Confidence 99999999987666544
No 236
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.16 E-value=3.1e-11 Score=113.13 Aligned_cols=168 Identities=21% Similarity=0.144 Sum_probs=80.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc-ccccccccc------ceeee-ecEE-EEEcC--EEeeecCcccccccccCCCcchh
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT-FSEVASYEF------TTLTC-IPGV-ITYRG--AKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~-~~~~~~~~~------tT~~~-~~g~-i~~~g--~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
.+|+|+|+||||||||+|+|.|. ..+.+..++ .|... ..+. +..++ ..+.++||+|+...... .
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~ 93 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINC-----R 93 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--------------
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCc-----H
Confidence 57799999999999999999986 333221111 12211 1111 11122 46789999997432100 0
Q ss_pred hhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccc-----eeeecccCCC-CCHHHHHH
Q 016864 135 QVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGI-----NFTSTVTNTN-LDLDTVKA 208 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~-----~i~~~~~~~~-l~~~~v~~ 208 (381)
+ ....++-. +... ...++..+|++++++..+ .+.+++|+.+ ++...+ .
T Consensus 94 e-----~~~~l~~~-------------l~~~-------~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~-~ 147 (301)
T 2qnr_A 94 D-----CFKTIISY-------------IDEQ-------FERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-A 147 (301)
T ss_dssp -------CTTHHHH-------------HHHH-------HHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH-H
T ss_pred H-----HHHHHHHH-------------HHHH-------HHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH-H
Confidence 0 00000000 1010 122345678888888666 3566788764 887653 3
Q ss_pred HHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH-------HH-hc-CCCeeeecccccccH
Q 016864 209 ICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE-------IL-DK-LPHYCPVSAHLEWNL 279 (381)
Q Consensus 209 ~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~-------~l-~~-~~~~v~vSa~~~~gl 279 (381)
++..+ .. ..|+++|+||.|+.+..++. .. .. ...++.+||.++ ++
T Consensus 148 ~l~~l----------------------~~---~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v 201 (301)
T 2qnr_A 148 FMKAI----------------------HN---KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DE 201 (301)
T ss_dssp HHHHH----------------------TT---TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC-------
T ss_pred HHHHH----------------------Hh---cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cc
Confidence 33332 11 25899999999998754431 11 11 246788999999 99
Q ss_pred HHHHHHHHHHc
Q 016864 280 DGLLEKIWEYL 290 (381)
Q Consensus 280 ~~L~~~i~~~l 290 (381)
++++..+.+.+
T Consensus 202 ~e~f~~l~~~i 212 (301)
T 2qnr_A 202 DEDFKEQTRLL 212 (301)
T ss_dssp ---CHHHHHHH
T ss_pred cHHHHHHHHHh
Confidence 98877766544
No 237
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.16 E-value=4.4e-11 Score=122.14 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=86.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||++.|+|...| ..|.+.++|.++.-.+...+.. ..+...|.
T Consensus 361 ~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~~~~~----~i~~v~Q~ 425 (582)
T 3b60_A 361 NINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI-----------DEGHILMDGHDLREYTLASLRN----QVALVSQN 425 (582)
T ss_dssp EEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC-----------SEEEEEETTEETTTBCHHHHHH----TEEEECSS
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC-----------CCCeEEECCEEccccCHHHHHh----hCeEEccC
Confidence 44555555589999999999999999999999887 8999999998764332111111 11111221
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc-------------ccccCcCcccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI-------------RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
..... .++.-.+.-...+....+.+.+.++..++ ...++...||+|++||.+++ +.+
T Consensus 426 ~~l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illl 504 (582)
T 3b60_A 426 VHLFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILIL 504 (582)
T ss_dssp CCCCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CcCCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 11111 13322221111011123345555555554 23345678999999999887 788
Q ss_pred cccCCCCCHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICS 211 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~ 211 (381)
|||++++|.+....+.+
T Consensus 505 DEpts~LD~~~~~~i~~ 521 (582)
T 3b60_A 505 DEATSALDTESERAIQA 521 (582)
T ss_dssp ETTTSSCCHHHHHHHHH
T ss_pred ECccccCCHHHHHHHHH
Confidence 99999999987666544
No 238
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.16 E-value=1.6e-10 Score=106.59 Aligned_cols=140 Identities=21% Similarity=0.218 Sum_probs=74.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccccc--------ccccceeeeecEEEE-EcC--EEeeecCcccccccccCCCcchh
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVA--------SYEFTTLTCIPGVIT-YRG--AKIQLLDLPGIIEGAKDGKGRGR 134 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~--------~~~~tT~~~~~g~i~-~~g--~~i~l~DtpG~~~~~~~~~~~~~ 134 (381)
.+++|+|+||||||||+|+|+|...+.+ +.+.++.....|.+. -.+ ..+.++|++|+......
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~------ 76 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN------ 76 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc------
Confidence 5799999999999999999999876521 111111111111110 011 24566777776432110
Q ss_pred hhhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccce------eeecccCCCCCHHHHHH
Q 016864 135 QVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGIN------FTSTVTNTNLDLDTVKA 208 (381)
Q Consensus 135 ~~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~------i~~~~~~~~l~~~~v~~ 208 (381)
. .....+..+++ ..+ ....+..||+|+++|..++ +..++|..+++...+.
T Consensus 77 ~-----~~~~~i~~~~~------------~~~------~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~- 132 (270)
T 3sop_A 77 E-----NCWEPIEKYIN------------EQY------EKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLE- 132 (270)
T ss_dssp T-----TCSHHHHHHHH------------HHH------HHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHH-
T ss_pred H-----HHHHHHHHHHH------------HHH------HhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHH-
Confidence 0 00001111111 000 1123467999999997776 4456677777765532
Q ss_pred HHHHhcccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHH
Q 016864 209 ICSEYRIHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELE 260 (381)
Q Consensus 209 ~l~~~~~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~ 260 (381)
++.. +... .++|+|+||+|..+.+++.
T Consensus 133 ~l~~----------------------L~~~---~~vI~Vi~K~D~lt~~e~~ 159 (270)
T 3sop_A 133 FMKH----------------------LSKV---VNIIPVIAKADTMTLEEKS 159 (270)
T ss_dssp HHHH----------------------HHTT---SEEEEEETTGGGSCHHHHH
T ss_pred HHHH----------------------HHhc---CcEEEEEeccccCCHHHHH
Confidence 2222 2221 5899999999999876653
No 239
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.16 E-value=6.9e-11 Score=109.99 Aligned_cols=123 Identities=14% Similarity=0.138 Sum_probs=75.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|...+ ..|.+.++|. +. ++.+.+
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~-i~------~v~Q~~--------- 108 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----------SEGKIKHSGR-IS------FCSQNS--------- 108 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE-----------EEEEEECCSC-EE------EECSSC---------
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCE-EE------EEeCCC---------
Confidence 44444445589999999999999999999999877 8899998872 22 222110
Q ss_pred hcccCCcchhHHHHhcCC-ChHHHHHHHHHHHhccc-------------ccccCcCcccceeeccccce---------ee
Q 016864 137 ISTARTCNCILIVLDAIK-PITHKRLIEKELEGFGI-------------RLNKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~-~~~~~~~i~~~l~~~~~-------------~~~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
.... .++.-.+. ... ... .+...++.+++ .+..++..||+|+++|..++ +.
T Consensus 109 -~l~~-~tv~enl~-~~~~~~~---~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll 182 (290)
T 2bbs_A 109 -WIMP-GTIKENII-GVSYDEY---RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL 182 (290)
T ss_dssp -CCCS-SBHHHHHH-TTCCCHH---HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred -ccCc-ccHHHHhh-CcccchH---HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEE
Confidence 0011 12222222 111 111 11122222222 12234579999999999886 78
Q ss_pred ecccCCCCCHHHHHHHHHH
Q 016864 194 STVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~~l~~ 212 (381)
+|||++++|......+++.
T Consensus 183 LDEPts~LD~~~~~~i~~~ 201 (290)
T 2bbs_A 183 LDSPFGYLDVLTEKEIFES 201 (290)
T ss_dssp EESTTTTCCHHHHHHHHHH
T ss_pred EECCcccCCHHHHHHHHHH
Confidence 8999999999888777664
No 240
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.16 E-value=1.9e-11 Score=129.61 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=62.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc----------------cccccceeeeecEEEEEc----------------CEE
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV----------------ASYEFTTLTCIPGVITYR----------------GAK 113 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~----------------~~~~~tT~~~~~g~i~~~----------------g~~ 113 (381)
.+|+|+|++|+|||||+++|++....+ ...++.|+......+.|. +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 689999999999999999997642111 113456777666777775 678
Q ss_pred eeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCCh
Q 016864 114 IQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPI 156 (381)
Q Consensus 114 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~~ 156 (381)
+.++||||..+.. ......++.+|++++|+|+.++.
T Consensus 100 i~liDTPG~~df~-------~~~~~~l~~aD~ailVvDa~~g~ 135 (842)
T 1n0u_A 100 INLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIEGV 135 (842)
T ss_dssp EEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTTBS
T ss_pred EEEEECcCchhhH-------HHHHHHHHhCCEEEEEEeCCCCC
Confidence 9999999987643 34455668999999999998763
No 241
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.15 E-value=3.5e-11 Score=116.34 Aligned_cols=138 Identities=21% Similarity=0.202 Sum_probs=88.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||+++|+|.. + ..|.+.++|..+.-++...+ ....++..|.
T Consensus 39 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~-----------~~G~I~i~G~~i~~~~~~~~----rr~ig~v~Q~ 102 (390)
T 3gd7_A 39 NISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-N-----------TEGEIQIDGVSWDSITLEQW----RKAFGVIPQK 102 (390)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS-E-----------EEEEEEESSCBTTSSCHHHH----HHTEEEESCC
T ss_pred ceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC-C-----------CCeEEEECCEECCcCChHHH----hCCEEEEcCC
Confidence 444555555899999999999999999999974 2 46999999876532211110 1112233333
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc--ccccCcCc-----------ccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI--RLNKQPPN-----------LTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~--~~~~~~~~-----------ls~~~~~r~~~~---------i~~ 194 (381)
...+. .++.-.+ .... ....+.+.+.++.+++ ..++++.. ||+|++||..++ +.+
T Consensus 103 ~~lf~-~tv~enl-~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLL 179 (390)
T 3gd7_A 103 VFIFS-GTFRKNL-DPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 179 (390)
T ss_dssp CCCCS-EEHHHHH-CTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cccCc-cCHHHHh-hhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22222 2332222 1111 1123456677888888 46667776 999999999887 788
Q ss_pred cccCCCCCHHHHHHHHHHh
Q 016864 195 TVTNTNLDLDTVKAICSEY 213 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~~~ 213 (381)
|||++++|......+...+
T Consensus 180 DEPts~LD~~~~~~l~~~l 198 (390)
T 3gd7_A 180 DEPSAHLDPVTYQIIRRTL 198 (390)
T ss_dssp ESHHHHSCHHHHHHHHHHH
T ss_pred eCCccCCCHHHHHHHHHHH
Confidence 9999999997766665543
No 242
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.15 E-value=2e-11 Score=108.34 Aligned_cols=78 Identities=18% Similarity=0.307 Sum_probs=52.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccc---cccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhc-cc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEV---ASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVIS-TA 140 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~---~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~-~~ 140 (381)
..+|+++|++|||||||+++|++..... +..|.++.+. .+..+.++||||....... ....+. ..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~ 80 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRYK----LSDYLKTRA 80 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGTHH----HHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHHHH----HHHHHHhcc
Confidence 4799999999999999999999876332 2223333222 4678899999998553211 111111 12
Q ss_pred CCcchhHHHHhcC
Q 016864 141 RTCNCILIVLDAI 153 (381)
Q Consensus 141 ~~~d~il~vvd~~ 153 (381)
..+|++++|+|+.
T Consensus 81 ~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 81 KFVKGLIFMVDST 93 (218)
T ss_dssp GGEEEEEEEEETT
T ss_pred ccCCEEEEEEECC
Confidence 3389999999998
No 243
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.13 E-value=8e-11 Score=120.10 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=84.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||++.|+|...| ..|.+.++|.++.-++...+.. ..+...|.
T Consensus 359 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~~~r~----~i~~v~Q~ 423 (578)
T 4a82_A 359 DINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-----------TSGQILIDGHNIKDFLTGSLRN----QIGLVQQD 423 (578)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC-----------SEEEEEETTEEGGGSCHHHHHH----TEEEECSS
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCHHHHhh----heEEEeCC
Confidence 44455555589999999999999999999999888 8999999998775443222111 11111221
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc-------------ccccCcCcccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI-------------RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
..... .++.-.+.-. .+....+.+.+.++..++ ...+....||+|++||.+++ +.+
T Consensus 424 ~~l~~-~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illl 501 (578)
T 4a82_A 424 NILFS-DTVKENILLG-RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILIL 501 (578)
T ss_dssp CCCCS-SBHHHHHGGG-CSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CccCc-ccHHHHHhcC-CCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 11111 1332222111 111112333344443333 23344568999999999887 788
Q ss_pred cccCCCCCHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICS 211 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~ 211 (381)
|||++++|.+....+.+
T Consensus 502 DEpts~LD~~~~~~i~~ 518 (578)
T 4a82_A 502 DEATSALDLESESIIQE 518 (578)
T ss_dssp ESTTTTCCHHHHHHHHH
T ss_pred ECccccCCHHHHHHHHH
Confidence 99999999976555443
No 244
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.11 E-value=6e-11 Score=115.42 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
..++|+|+||||||||+|+|+|...+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 49999999999999999999997654
No 245
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.10 E-value=7.6e-11 Score=120.74 Aligned_cols=138 Identities=18% Similarity=0.145 Sum_probs=83.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||++.|+|...| ..|.+.++|.++.-++...+... .+...|.
T Consensus 373 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~i~~~~~~~~r~~----i~~v~Q~ 437 (598)
T 3qf4_B 373 DITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV-----------DRGQILVDGIDIRKIKRSSLRSS----IGIVLQD 437 (598)
T ss_dssp SEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC-----------SEEEEEETTEEGGGSCHHHHHHH----EEEECTT
T ss_pred ceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC-----------CCeEEEECCEEhhhCCHHHHHhc----eEEEeCC
Confidence 45555555689999999999999999999999888 89999999988754432221110 1111111
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc-------------ccccCcCcccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI-------------RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
.... ..++.-.+.-. .+....+.+.+.++..++ ...+....||+|++||.+++ +.+
T Consensus 438 ~~lf-~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illl 515 (598)
T 3qf4_B 438 TILF-STTVKENLKYG-NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515 (598)
T ss_dssp CCCC-SSBHHHHHHSS-STTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred Cccc-cccHHHHHhcC-CCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1111 11222222111 111111223333333333 12223368999999999887 788
Q ss_pred cccCCCCCHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICS 211 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~ 211 (381)
|||++++|.+....+.+
T Consensus 516 DEpts~LD~~~~~~i~~ 532 (598)
T 3qf4_B 516 DEATSNVDTKTEKSIQA 532 (598)
T ss_dssp CCCCTTCCHHHHHHHHH
T ss_pred ECCccCCCHHHHHHHHH
Confidence 99999999977666544
No 246
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.09 E-value=7.5e-12 Score=120.66 Aligned_cols=84 Identities=25% Similarity=0.282 Sum_probs=57.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc------cccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT------FSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVIST 139 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~------~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 139 (381)
.+|+++|.+|+|||||+|+|++. ...++++|+||++.....+ +..+.++||||+............+.+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe---CCCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 68999999999999999999987 4567899999998765443 23489999999976532221122222222
Q ss_pred c---CCcchhHHHHhc
Q 016864 140 A---RTCNCILIVLDA 152 (381)
Q Consensus 140 ~---~~~d~il~vvd~ 152 (381)
+ ...+.+++++++
T Consensus 240 ~~~~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNE 255 (369)
T ss_dssp HSCSSCCCCEEEEECT
T ss_pred HhcccccCceEEEEcC
Confidence 2 445555555554
No 247
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.09 E-value=4.6e-12 Score=127.98 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=41.5
Q ss_pred HHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHHHHHHHHH
Q 016864 161 LIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 161 ~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~v~~~l~ 211 (381)
.+.+.|+.+++ ..++++..||+|+++|..++ +.+|||++++|......+++
T Consensus 138 ~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~ 199 (538)
T 1yqt_A 138 KLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAAR 199 (538)
T ss_dssp CHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 35667788888 57788999999999998886 78899999999987666544
No 248
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.07 E-value=2e-10 Score=117.60 Aligned_cols=139 Identities=19% Similarity=0.166 Sum_probs=85.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||++.|+|...| ..|.+.++|.++.-++...+.. ..+...|.
T Consensus 362 ~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-----------~~G~i~~~g~~i~~~~~~~~~~----~i~~v~Q~ 426 (595)
T 2yl4_A 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDP-----------ASGTISLDGHDIRQLNPVWLRS----KIGTVSQE 426 (595)
T ss_dssp EEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCC-----------SEEEEEETTEETTTBCHHHHHH----SEEEECSS
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCcEEEECCEEhhhCCHHHHHh----ceEEEccC
Confidence 34444555589999999999999999999999877 8999999998764332211110 11111221
Q ss_pred hcccCCcchhHHHHhcCCC--hHHHHHHHHHHHhccc-------------ccccCcCcccceeeccccce---------e
Q 016864 137 ISTARTCNCILIVLDAIKP--ITHKRLIEKELEGFGI-------------RLNKQPPNLTFRKKDKGGIN---------F 192 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~--~~~~~~i~~~l~~~~~-------------~~~~~~~~ls~~~~~r~~~~---------i 192 (381)
..... .++.-.+.-+... ....+.+.+.++.+++ ...++...||+|++||.+++ +
T Consensus 427 ~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~il 505 (595)
T 2yl4_A 427 PILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKIL 505 (595)
T ss_dssp CCCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred CcccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEE
Confidence 11111 2332222111110 1223445555665554 12234478999999999887 7
Q ss_pred eecccCCCCCHHHHHHHHH
Q 016864 193 TSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 193 ~~~~~~~~l~~~~v~~~l~ 211 (381)
.+|||++++|.+....+.+
T Consensus 506 llDEpts~LD~~~~~~i~~ 524 (595)
T 2yl4_A 506 LLDEATSALDAENEYLVQE 524 (595)
T ss_dssp EEECCCSSCCHHHHHHHHH
T ss_pred EEECcccCCCHHHHHHHHH
Confidence 8899999999987665544
No 249
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.07 E-value=7.8e-11 Score=107.67 Aligned_cols=50 Identities=22% Similarity=0.171 Sum_probs=37.7
Q ss_pred ccEEEEEecCCcCCHHHH---H-----------HH------------------hc---CCCeeeecccccccHHHHHHHH
Q 016864 242 MPCIYVINKIDQITLEEL---E-----------IL------------------DK---LPHYCPVSAHLEWNLDGLLEKI 286 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~l---~-----------~l------------------~~---~~~~v~vSa~~~~gl~~L~~~i 286 (381)
+|.++|+||+|+...... . .+ .. ..+++++||+++.|+++|++.+
T Consensus 172 ~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i 251 (262)
T 1yrb_A 172 ATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLA 251 (262)
T ss_dssp SCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHH
T ss_pred CCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHH
Confidence 699999999999864321 1 00 11 1268999999999999999999
Q ss_pred HHHcC
Q 016864 287 WEYLN 291 (381)
Q Consensus 287 ~~~l~ 291 (381)
.+.+.
T Consensus 252 ~~~~~ 256 (262)
T 1yrb_A 252 YEHYC 256 (262)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87664
No 250
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.06 E-value=1.8e-10 Score=117.59 Aligned_cols=139 Identities=17% Similarity=0.106 Sum_probs=84.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|+|+||||||||++.|+|...+ ..|.+.++|.++.-++...+... .+...|.
T Consensus 361 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~-----------~~G~i~i~g~~i~~~~~~~~r~~----i~~v~Q~ 425 (587)
T 3qf4_A 361 GVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP-----------ERGRVEVDELDVRTVKLKDLRGH----ISAVPQE 425 (587)
T ss_dssp EEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC-----------SEEEEEESSSBGGGBCHHHHHHH----EEEECSS
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-----------CCcEEEECCEEcccCCHHHHHhh----eEEECCC
Confidence 44455555589999999999999999999999887 89999999977654332221110 1111111
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhc-----------cc--ccccCcCcccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGF-----------GI--RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~-----------~~--~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
.... ..++.-.+ ....+....+.+.+.++.. |+ ...++...||+|++||.+++ +.+
T Consensus 426 ~~lf-~~tv~eni-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illl 503 (587)
T 3qf4_A 426 TVLF-SGTIKENL-KWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLIL 503 (587)
T ss_dssp CCCC-SEEHHHHH-TTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred CcCc-CccHHHHH-hccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1111 11222222 1111111112222222222 22 34567789999999999887 788
Q ss_pred cccCCCCCHHHHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~l~~ 212 (381)
|||++++|.+....+.+.
T Consensus 504 DEpts~LD~~~~~~i~~~ 521 (587)
T 3qf4_A 504 DDCTSSVDPITEKRILDG 521 (587)
T ss_dssp ESCCTTSCHHHHHHHHHH
T ss_pred ECCcccCCHHHHHHHHHH
Confidence 999999999776665543
No 251
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.00 E-value=1.8e-11 Score=123.42 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=40.4
Q ss_pred HHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHHHHHHHHH
Q 016864 162 IEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 162 i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~v~~~l~ 211 (381)
+.+.++.+++ ..++++..||+|++||..++ +.+|||++++|......++.
T Consensus 119 ~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~ 179 (538)
T 3ozx_A 119 KDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK 179 (538)
T ss_dssp HHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 4456677777 67888999999999998886 78899999999987665544
No 252
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.00 E-value=1.5e-11 Score=125.61 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=41.5
Q ss_pred HHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHHHHHHHHH
Q 016864 161 LIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 161 ~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~v~~~l~ 211 (381)
.+.+.|+.+++ ..++++..||+|+++|..++ +.+|||+++||......+++
T Consensus 208 ~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~ 269 (607)
T 3bk7_A 208 KFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVAR 269 (607)
T ss_dssp CHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 35567778888 57888999999999998887 78899999999987665544
No 253
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.00 E-value=2.4e-10 Score=116.57 Aligned_cols=117 Identities=12% Similarity=0.133 Sum_probs=68.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
..++|+|+||||||||+++|+|...+. .|.. +....+.++ .+. ........+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~-----------~G~~-~~~~~i~~~------~q~----------~~~~~~~tv 430 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPD-----------EGQD-IPKLNVSMK------PQK----------IAPKFPGTV 430 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCS-----------BCCC-CCSCCEEEE------CSS----------CCCCCCSBH
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCC-----------CCcC-ccCCcEEEe------ccc----------ccccCCccH
Confidence 689999999999999999999998772 2321 011111111 100 000000011
Q ss_pred hHHHH-hcCCChHHHHHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHHHHHHHH
Q 016864 146 ILIVL-DAIKPITHKRLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDTVKAIC 210 (381)
Q Consensus 146 il~vv-d~~~~~~~~~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~v~~~l 210 (381)
..++. .............+.++.+++ ..++++..||+|++||..++ +.+|||++++|......++
T Consensus 431 ~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~ 507 (608)
T 3j16_B 431 RQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICS 507 (608)
T ss_dssp HHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHH
Confidence 11111 111111122344566777777 57888999999999998776 6667888888876555443
No 254
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.99 E-value=7e-10 Score=108.21 Aligned_cols=175 Identities=18% Similarity=0.161 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccc-------cceeeeecEE-EEEcC--EEeeecCcccccccccCCCcchhh
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYE-------FTTLTCIPGV-ITYRG--AKIQLLDLPGIIEGAKDGKGRGRQ 135 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~-------~tT~~~~~g~-i~~~g--~~i~l~DtpG~~~~~~~~~~~~~~ 135 (381)
..|+|+|+||||||||+|+|+|...+...+. .|+.....+. +...+ ..+.++||+|+...... .
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------~ 105 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------S 105 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC---------------
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc------h
Confidence 4579999999999999999999865322221 1111011111 11122 36789999998543210 0
Q ss_pred hhcccCCcchhHHHHhcCCChHHHHHHHHHHHhcccccccCcCcccceeeccccceeeecccC-CCCCHHHHHHHHHHhc
Q 016864 136 VISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKQPPNLTFRKKDKGGINFTSTVTN-TNLDLDTVKAICSEYR 214 (381)
Q Consensus 136 ~~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~~~~~~~~~ls~~~~~r~~~~i~~~~~~-~~l~~~~v~~~l~~~~ 214 (381)
.....+.-. +...+..+...-..-...+. ...++.+.+.+++|+ .+++...+ .++..+
T Consensus 106 -----~~~~~i~~~------------i~~~~~~~l~qr~~IaRal~--~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L- 164 (418)
T 2qag_C 106 -----NCWQPVIDY------------IDSKFEDYLNAESRVNRRQM--PDNRVQCCLYFIAPSGHGLKPLDI-EFMKRL- 164 (418)
T ss_dssp -------CHHHHHH------------HHHHHHHHTTTSCC-CCCCC--CCC-CCEEEEECCC-CCSCCHHHH-HHHHHH-
T ss_pred -----hhHHHHHHH------------HHHHHHHHHHHHHHHHHHhc--cCCCeeEEEEEecCcccCCCHHHH-HHHHHH-
Confidence 000001100 11111111110000000010 122334456677776 46666543 333332
Q ss_pred ccCCccccccCCChhHHHHHHhcccccccEEEEEecCCcCCHHHHHHH---------hcCCCeeeecccccccHHHHHHH
Q 016864 215 IHNADITLRYDATADDLIDVIEGSRIYMPCIYVINKIDQITLEELEIL---------DKLPHYCPVSAHLEWNLDGLLEK 285 (381)
Q Consensus 215 ~~~~~~~~~~e~t~~~~~~~l~~~~~~~p~i~v~NK~Dl~~~~~l~~l---------~~~~~~v~vSa~~~~gl~~L~~~ 285 (381)
.. ..|+|+|+||+|+.+..++..+ ....+++.+|+.++.+++++...
T Consensus 165 ---------------------~~---~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~ 220 (418)
T 2qag_C 165 ---------------------HE---KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKK 220 (418)
T ss_dssp ---------------------TT---TSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-------------
T ss_pred ---------------------hc---cCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHH
Confidence 11 2699999999999876554321 12346788899999999988777
Q ss_pred HHHHcC
Q 016864 286 IWEYLN 291 (381)
Q Consensus 286 i~~~l~ 291 (381)
+...++
T Consensus 221 l~~~iP 226 (418)
T 2qag_C 221 IKDRLP 226 (418)
T ss_dssp ----CC
T ss_pred HHhhCC
Confidence 777655
No 255
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.98 E-value=6.2e-10 Score=104.60 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=55.5
Q ss_pred EEEEEcCCCCchHHHHHHHhcccccc-cccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcch
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFSEV-ASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNC 145 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~~~-~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 145 (381)
+|.++|..|||||||++.+.+...+. ......|+......+. ....++++||||..+.... .. ......+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~---~l-~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP---SY-DSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC---SH-HHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccch---hh-hhhhhccCCCE
Confidence 58899999999999999887654321 1123445544444432 2368899999997554210 00 11224589999
Q ss_pred hHHHHhcCCC
Q 016864 146 ILIVLDAIKP 155 (381)
Q Consensus 146 il~vvd~~~~ 155 (381)
+++|+|..+.
T Consensus 76 ~IlV~Ditd~ 85 (331)
T 3r7w_B 76 LVYVIDSQDE 85 (331)
T ss_dssp EEEECCCSSC
T ss_pred EEEEEECCch
Confidence 9999999875
No 256
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.97 E-value=6.8e-11 Score=113.88 Aligned_cols=57 Identities=35% Similarity=0.486 Sum_probs=42.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc-------ccccccccceeeeecEEEEEcCEEeeecCccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF-------SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEG 125 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~-------~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~ 125 (381)
.+|+++|.+|+|||||+|+|+|.. ..++++|+||++.....+ +..+.++||||+...
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~ 224 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL---DEESSLYDTPGIINH 224 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES---SSSCEEEECCCBCCT
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe---cCCeEEEeCCCcCcH
Confidence 689999999999999999999862 346899999998776443 223899999999764
No 257
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.96 E-value=1.2e-10 Score=118.80 Aligned_cols=52 Identities=10% Similarity=0.112 Sum_probs=42.9
Q ss_pred HHHHHHHHhccc--ccccCcCcccceeeccccce---------eeecccCCCCCHHHHHHHHH
Q 016864 160 RLIEKELEGFGI--RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 160 ~~i~~~l~~~~~--~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~v~~~l~ 211 (381)
+.+.+.++.+++ ..++++..||+|++||..++ +.+|||+++||......++.
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~ 262 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ 262 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHH
Confidence 456777888888 67889999999999998886 78899999999987665544
No 258
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.95 E-value=3.6e-10 Score=104.87 Aligned_cols=59 Identities=32% Similarity=0.457 Sum_probs=38.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccc-ccccccccceeeeecEEEEEcCEEeeecCcccccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTF-SEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGA 126 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~-~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~ 126 (381)
..+++++|.||+|||||+|+|+|.. ..+++.|+||++... +.+ +..+.++||||+....
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGILWPK 179 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCCCSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcCCCC
Confidence 3799999999999999999999987 578999999998853 333 4578999999997643
No 259
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.89 E-value=4.2e-10 Score=119.51 Aligned_cols=44 Identities=32% Similarity=0.426 Sum_probs=36.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG 111 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g 111 (381)
++++....+.+++|+|+||||||||+++|+|...+ ..|.+.+++
T Consensus 691 dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P-----------~sG~I~~~~ 734 (986)
T 2iw3_A 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP-----------TSGEVYTHE 734 (986)
T ss_dssp EEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCC-----------SEEEEEECT
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEEcC
Confidence 34444444589999999999999999999999887 788888864
No 260
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.87 E-value=2.8e-09 Score=113.19 Aligned_cols=54 Identities=20% Similarity=0.146 Sum_probs=43.7
Q ss_pred HHHHHHHHHhccc---ccccCcCcccceeeccccce---------eeecccCCCCCHHHHHHHHHH
Q 016864 159 KRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN---------FTSTVTNTNLDLDTVKAICSE 212 (381)
Q Consensus 159 ~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~---------i~~~~~~~~l~~~~v~~~l~~ 212 (381)
.+.+.+.|+.+++ ..++++..||+|+++|..++ +.+|||++++|......++..
T Consensus 525 ~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~ 590 (986)
T 2iw3_A 525 KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNY 590 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 4567788888888 36788999999999998886 778899999998877665543
No 261
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.84 E-value=2.8e-09 Score=117.79 Aligned_cols=136 Identities=17% Similarity=0.210 Sum_probs=82.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+.+++|||++|||||||++.|.|...+ ..|.+.++|.++.-++...+... .+...|.
T Consensus 408 ~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~-----------~~G~i~i~g~~i~~~~~~~~r~~----i~~v~Q~ 472 (1284)
T 3g5u_A 408 GLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP-----------LDGMVSIDGQDIRTINVRYLREI----IGVVSQE 472 (1284)
T ss_dssp EEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC-----------SEEEEEETTEEGGGSCHHHHHHH----EEEECSS
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEHHhCCHHHHHhh----eEEEcCC
Confidence 44555555689999999999999999999999887 89999999988765543222111 1111221
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHH---------hc--cc--ccccCcCcccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELE---------GF--GI--RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~---------~~--~~--~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
..... .++.-.+.-.... ...+.+.+.+. .+ |. ........||+|++||.+++ +.+
T Consensus 473 ~~l~~-~ti~eNi~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliL 550 (1284)
T 3g5u_A 473 PVLFA-TTIAENIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLL 550 (1284)
T ss_dssp CCCCS-SCHHHHHHHHCSS-CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CccCC-ccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11111 1222222111111 11112222222 22 11 24455678999999999887 888
Q ss_pred cccCCCCCHHHHHHH
Q 016864 195 TVTNTNLDLDTVKAI 209 (381)
Q Consensus 195 ~~~~~~l~~~~v~~~ 209 (381)
|||++++|.+.-..+
T Consensus 551 DEpts~LD~~~~~~i 565 (1284)
T 3g5u_A 551 DEATSALDTESEAVV 565 (1284)
T ss_dssp ESTTCSSCHHHHHHH
T ss_pred ECCCCCCCHHHHHHH
Confidence 999999998764443
No 262
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.79 E-value=5.5e-09 Score=93.03 Aligned_cols=49 Identities=24% Similarity=0.171 Sum_probs=36.6
Q ss_pred ccEEEEEecCCcCCH-----HHHHH-Hh---cCCCeeeecccccccHHHHHHHHHHHc
Q 016864 242 MPCIYVINKIDQITL-----EELEI-LD---KLPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~-----~~l~~-l~---~~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
+|.++|+||+|+... +++.. +. ...+++.+||+++.|++++++.+.+.+
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 589999999998642 22222 22 234688999999999999999987754
No 263
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.78 E-value=8.5e-09 Score=114.32 Aligned_cols=139 Identities=18% Similarity=0.216 Sum_probs=85.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+.+|||||++|||||||++.|.|...| ..|.|.++|.++.-++...++... +...|.
T Consensus 1097 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----------~~G~I~iDG~di~~i~~~~lR~~i----~~V~Qd 1161 (1321)
T 4f4c_A 1097 GLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT-----------LGGEIFIDGSEIKTLNPEHTRSQI----AIVSQE 1161 (1321)
T ss_dssp EEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC-----------SSSEEEETTEETTTBCHHHHHTTE----EEECSS
T ss_pred ceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC-----------CCCEEEECCEEhhhCCHHHHHhhe----EEECCC
Confidence 45555556689999999999999999999998877 899999999887666544443221 111111
Q ss_pred hcccCCcchhHHHHhcCC-ChHHHHHHHHHHHhccc-------------ccccCcCcccceeeccccce---------ee
Q 016864 137 ISTARTCNCILIVLDAIK-PITHKRLIEKELEGFGI-------------RLNKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~-~~~~~~~i~~~l~~~~~-------------~~~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
... -..++--.+.=+.+ +....+.+.+.++..++ .+...=..||+|++||.+++ +.
T Consensus 1162 p~L-F~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILi 1240 (1321)
T 4f4c_A 1162 PTL-FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILL 1240 (1321)
T ss_dssp CCC-CSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEE
T ss_pred CEe-eCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEE
Confidence 100 11112111110011 12233445555555554 11122246999999999887 77
Q ss_pred ecccCCCCCHHHHHHHHH
Q 016864 194 STVTNTNLDLDTVKAICS 211 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~~l~ 211 (381)
+||+++.+|.+.-..+.+
T Consensus 1241 LDEaTSaLD~~tE~~Iq~ 1258 (1321)
T 4f4c_A 1241 LDEATSALDTESEKVVQE 1258 (1321)
T ss_dssp EESCCCSTTSHHHHHHHH
T ss_pred EeCccccCCHHHHHHHHH
Confidence 889999888765444433
No 264
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.78 E-value=7.3e-09 Score=114.55 Aligned_cols=139 Identities=18% Similarity=0.223 Sum_probs=81.7
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+.++||+|++|||||||+++|.|...+ ..|.+.++|.++.-++...++ ...+...|.
T Consensus 1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p-----------~~G~I~i~g~~i~~~~~~~~r----~~i~~v~Q~ 1115 (1284)
T 3g5u_A 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-----------MAGSVFLDGKEIKQLNVQWLR----AQLGIVSQE 1115 (1284)
T ss_dssp SCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC-----------SEEEEESSSSCTTSSCHHHHT----TSCEEEESS
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEEcccCCHHHHH----hceEEECCC
Confidence 34444444589999999999999999999999888 899999999776533321111 112222221
Q ss_pred hcccCCcchhHHHHhcCC-ChHHHHHHHHHHHhccc-------------ccccCcCcccceeeccccce---------ee
Q 016864 137 ISTARTCNCILIVLDAIK-PITHKRLIEKELEGFGI-------------RLNKQPPNLTFRKKDKGGIN---------FT 193 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~-~~~~~~~i~~~l~~~~~-------------~~~~~~~~ls~~~~~r~~~~---------i~ 193 (381)
... -..++.-.+.-... .....+.+.+.++..++ .+......||+|++||.+++ +.
T Consensus 1116 ~~l-~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLi 1194 (1284)
T 3g5u_A 1116 PIL-FDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILL 1194 (1284)
T ss_dssp CCC-CSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEE
T ss_pred Ccc-ccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEE
Confidence 111 11222222211110 01112223333333332 22334468999999999887 88
Q ss_pred ecccCCCCCHHHHHHHHH
Q 016864 194 STVTNTNLDLDTVKAICS 211 (381)
Q Consensus 194 ~~~~~~~l~~~~v~~~l~ 211 (381)
+|||++++|.+....+.+
T Consensus 1195 LDEpTs~lD~~~~~~i~~ 1212 (1284)
T 3g5u_A 1195 LDEATSALDTESEKVVQE 1212 (1284)
T ss_dssp EESCSSSCCHHHHHHHHH
T ss_pred EeCCcccCCHHHHHHHHH
Confidence 899999999876554443
No 265
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.77 E-value=4.9e-09 Score=102.04 Aligned_cols=67 Identities=21% Similarity=0.159 Sum_probs=40.2
Q ss_pred CceeEEecCCcE--EEEEcCCCCchHHHHHHHhcccc---cccc-cccceeeeecEEEEEcC--EEeeecCcccccc
Q 016864 56 EGFDVTKSGDSR--VGLVGFPSVGKSTLLNKLTGTFS---EVAS-YEFTTLTCIPGVITYRG--AKIQLLDLPGIIE 124 (381)
Q Consensus 56 ~~~~~~~~~~~~--i~lvG~~naGKSTLln~L~g~~~---~~~~-~~~tT~~~~~g~i~~~g--~~i~l~DtpG~~~ 124 (381)
+++++.. | .. ++|+|+||||||||+|+|+|... ++.. .++.++....-.....+ ..+.++|++|+..
T Consensus 33 vsl~i~~-G-ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 33 VNKSVSQ-G-FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp HHHSCC--C-CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred CceEecC-C-CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 3455544 3 56 99999999999999999999752 2221 24445442211122122 2678899998743
No 266
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.76 E-value=4.5e-09 Score=106.42 Aligned_cols=60 Identities=32% Similarity=0.406 Sum_probs=51.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEE-------cCEEeeecCcccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITY-------RGAKIQLLDLPGIIEGA 126 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~-------~g~~i~l~DtpG~~~~~ 126 (381)
.+|+++|+||+|||||+|+|+|....+ +.++||.+++.|...| .+..+.++||||+....
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 689999999999999999999986544 7889999999998766 46789999999998643
No 267
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.68 E-value=2.5e-08 Score=103.44 Aligned_cols=47 Identities=11% Similarity=0.173 Sum_probs=35.6
Q ss_pred HHHhccc---ccccCcCcccceeeccccce-----------eeecccCCCCCHHHHHHHHH
Q 016864 165 ELEGFGI---RLNKQPPNLTFRKKDKGGIN-----------FTSTVTNTNLDLDTVKAICS 211 (381)
Q Consensus 165 ~l~~~~~---~~~~~~~~ls~~~~~r~~~~-----------i~~~~~~~~l~~~~v~~~l~ 211 (381)
.++.+++ ..++++..||+|+++|..++ +.+|||++++|......+++
T Consensus 185 ~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~ 245 (670)
T 3ux8_A 185 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIA 245 (670)
T ss_dssp HHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHH
T ss_pred HHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHH
Confidence 4667777 25789999999999997775 55688888888766655443
No 268
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.67 E-value=4.4e-08 Score=108.62 Aligned_cols=132 Identities=17% Similarity=0.195 Sum_probs=82.1
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecCcccccccccCCCcchhhh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQV 136 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~ 136 (381)
++++....+..++|||++|||||||++.|.|...+ ..|.+.++|.++.-+|...++... +...|.
T Consensus 436 ~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~-----------~~G~I~idG~~i~~~~~~~lr~~i----~~v~Q~ 500 (1321)
T 4f4c_A 436 GMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-----------LKGKITIDGVDVRDINLEFLRKNV----AVVSQE 500 (1321)
T ss_dssp EEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC-----------SEEEEEETTEETTTSCHHHHHHHE----EEECSS
T ss_pred ceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc-----------ccCcccCCCccchhccHHHHhhcc----cccCCc
Confidence 44555555589999999999999999999999888 899999999887665543332211 111111
Q ss_pred hcccCCcchhHHHHhcCCChHHHHHHHHHHHhccc-------------ccccCcCcccceeeccccce---------eee
Q 016864 137 ISTARTCNCILIVLDAIKPITHKRLIEKELEGFGI-------------RLNKQPPNLTFRKKDKGGIN---------FTS 194 (381)
Q Consensus 137 ~~~~~~~d~il~vvd~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~ls~~~~~r~~~~---------i~~ 194 (381)
. .+-+.++--.+.=+ .+....+++.+.++..++ .+...=..||+|++||.+++ +.+
T Consensus 501 ~-~Lf~~TI~eNI~~g-~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliL 578 (1321)
T 4f4c_A 501 P-ALFNCTIEENISLG-KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLL 578 (1321)
T ss_dssp C-CCCSEEHHHHHHTT-CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred c-eeeCCchhHHHhhh-cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Confidence 1 11222222222111 122223344444444433 23333457999999999887 778
Q ss_pred cccCCCCCHHH
Q 016864 195 TVTNTNLDLDT 205 (381)
Q Consensus 195 ~~~~~~l~~~~ 205 (381)
|+|++.+|.+.
T Consensus 579 DE~tSaLD~~t 589 (1321)
T 4f4c_A 579 DEATSALDAES 589 (1321)
T ss_dssp ESTTTTSCTTT
T ss_pred ecccccCCHHH
Confidence 89998888653
No 269
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.63 E-value=1e-07 Score=98.82 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=34.8
Q ss_pred HHHHHHHHhccc---ccccCcCcccceeeccccce------------eeecccCCCCCHHHHHHHH
Q 016864 160 RLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN------------FTSTVTNTNLDLDTVKAIC 210 (381)
Q Consensus 160 ~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~------------i~~~~~~~~l~~~~v~~~l 210 (381)
....+.+..+++ ..++++..||+|++||..++ +.+|||++++|......++
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~ 586 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL 586 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHH
Confidence 445566777777 35778999999999997665 3446666666665544443
No 270
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.62 E-value=6e-09 Score=103.78 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCCchHHHHHHHh
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLT 86 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~ 86 (381)
....|+++|++||||||+++.|+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34699999999999999999998
No 271
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.57 E-value=2.5e-08 Score=91.37 Aligned_cols=57 Identities=35% Similarity=0.499 Sum_probs=39.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cccccccceeeeecEEEEEcCEEeeecCccccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEG 125 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~~ 125 (381)
.+++++|.||+|||||+|+|+|... .+++.|++|+... .+.. +..+.++||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe-CCCEEEEECCCcccC
Confidence 5999999999999999999999875 6788999998764 2332 457899999999764
No 272
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.42 E-value=1.6e-07 Score=82.94 Aligned_cols=25 Identities=20% Similarity=0.007 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
..++|+|+||||||||+++|+|. .+
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CC
Confidence 79999999999999999999998 66
No 273
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.37 E-value=6.2e-07 Score=94.30 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=50.1
Q ss_pred HHHHHHHHHhccc---ccccCcCcccceeeccccceeeecccCCCCCHHHHHHHHHHhccc---CCccccccCCChhHHH
Q 016864 159 KRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLDTVKAICSEYRIH---NADITLRYDATADDLI 232 (381)
Q Consensus 159 ~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~i~~~~~~~~l~~~~v~~~l~~~~~~---~~~~~~~~e~t~~~~~ 232 (381)
...+.+.|+.+++ .+.+++..||+|++||..++ ..... ..+++++||||
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LA--------------------raL~~~p~~p~lLILDEPT----- 761 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLA--------------------TELRRSGRGGTVYVLDEPT----- 761 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHH--------------------HTTSSCCSSCEEEEEECTT-----
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHH--------------------HHHHhCCCCCCEEEEECCC-----
Confidence 3456788888888 35788999999999995443 22222 24666667776
Q ss_pred HHHhcccccccEEEEEecCCcCCHHHH----HHHhcCCCeeeecccccc
Q 016864 233 DVIEGSRIYMPCIYVINKIDQITLEEL----EILDKLPHYCPVSAHLEW 277 (381)
Q Consensus 233 ~~l~~~~~~~p~i~v~NK~Dl~~~~~l----~~l~~~~~~v~vSa~~~~ 277 (381)
+.+|......+ ..+.....+|++++|+-.
T Consensus 762 ----------------sGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~ 794 (842)
T 2vf7_A 762 ----------------TGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQ 794 (842)
T ss_dssp ----------------TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred ----------------CCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 56665544432 233445667778888743
No 274
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.36 E-value=1.7e-06 Score=91.72 Aligned_cols=52 Identities=12% Similarity=0.243 Sum_probs=35.8
Q ss_pred HHHHHHHHHhccc---ccccCcCcccceeeccccce------------eeecccCCCCCHHHHHHHH
Q 016864 159 KRLIEKELEGFGI---RLNKQPPNLTFRKKDKGGIN------------FTSTVTNTNLDLDTVKAIC 210 (381)
Q Consensus 159 ~~~i~~~l~~~~~---~~~~~~~~ls~~~~~r~~~~------------i~~~~~~~~l~~~~v~~~l 210 (381)
.....+.|..+|+ .+.+++..||+|++||..++ +++|||++++|......++
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~ 848 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLV 848 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHH
Confidence 4556678888888 46788999999999996654 3445555555555544443
No 275
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.35 E-value=8.7e-09 Score=100.99 Aligned_cols=88 Identities=24% Similarity=0.322 Sum_probs=51.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc------c-ccc------------------------cccceeeeec----EEEEE
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS------E-VAS------------------------YEFTTLTCIP----GVITY 109 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~------~-~~~------------------------~~~tT~~~~~----g~i~~ 109 (381)
...|+++|++||||||+.+.|++... . +.. .+++|.+|.. +.-.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999987421 0 110 1114444421 11112
Q ss_pred cCEEeeecCcccccccccCCCcchhh--hhcccCCcchhHHHHhcCCC
Q 016864 110 RGAKIQLLDLPGIIEGAKDGKGRGRQ--VISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 110 ~g~~i~l~DtpG~~~~~~~~~~~~~~--~~~~~~~~d~il~vvd~~~~ 155 (381)
.+..+.++||||...... ....+ .+..+..+|.+++|+|+..+
T Consensus 179 ~~~D~vIIDT~G~~~~~~---~l~~~l~~i~~~~~~d~vllVvda~~g 223 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEK---GLLEEMKQIKEITNPDEIILVIDGTIG 223 (432)
T ss_dssp SSCSEEEEECCCSCSSHH---HHHHHHHHTTSSSCCSEEEEEEEGGGG
T ss_pred hCCCEEEEcCCCCccccH---HHHHHHHHHHHHhcCcceeEEeecccc
Confidence 567889999999764210 01111 11223367888888887654
No 276
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.30 E-value=4.5e-08 Score=96.72 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecE-E-EEEcC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPG-V-ITYRG 111 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g-~-i~~~g 111 (381)
.+++|+|+||||||||+++|+|...+ ..| . +.+++
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p-----------~~G~~pI~vdg 175 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALK-----------FNAYQPLYINL 175 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHH-----------HHCCCCEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccc-----------cCCceeEEEcC
Confidence 89999999999999999999998776 667 5 66655
No 277
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.18 E-value=1.2e-06 Score=85.76 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=46.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc---------------cccccccccceeeeecEEEEEc-----------CEEeeecCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT---------------FSEVASYEFTTLTCIPGVITYR-----------GAKIQLLDL 119 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~---------------~~~~~~~~~tT~~~~~g~i~~~-----------g~~i~l~Dt 119 (381)
..|+|+|++++|||||+|.|.|. ...+-...+||..++.|...|. +..+.++||
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT 147 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence 47999999999999999999875 1122223347888889988774 257999999
Q ss_pred cccccc
Q 016864 120 PGIIEG 125 (381)
Q Consensus 120 pG~~~~ 125 (381)
||+...
T Consensus 148 eG~~~~ 153 (447)
T 3q5d_A 148 QGTFDS 153 (447)
T ss_dssp ECCCSS
T ss_pred Cccccc
Confidence 998654
No 278
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.17 E-value=5e-06 Score=85.05 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLD 118 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~D 118 (381)
+.|+|+|++|||||||+++|+|...| ...|.+.++|..+.+..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P----------~~sG~vt~~g~~i~~~~ 88 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALP----------RGSGIVTRCPLVLKLKK 88 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-----------------CCCSCEEEEEEE
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCC----------CCCCeEEEcCEEEEEec
Confidence 46999999999999999999998644 03677777787766544
No 279
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.15 E-value=4.8e-07 Score=78.96 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=48.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc--cccccccceeeeecEEEEEcCEEeeecCcccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS--EVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIE 124 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~--~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG~~~ 124 (381)
+..|+|+||+|||||||++.|.+... .....+.||+.|..|. .+|..+.++|...+..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~ 78 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTR 78 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhh
Confidence 37999999999999999999998764 3366789999999987 5788888888777644
No 280
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.13 E-value=4.9e-07 Score=86.09 Aligned_cols=56 Identities=29% Similarity=0.242 Sum_probs=35.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc-cc-cccc---c----ceeeeecEEEEEcCEEeeecCcccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS-EV-ASYE---F----TTLTCIPGVITYRGAKIQLLDLPGIIE 124 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~-~~-~~~~---~----tT~~~~~g~i~~~g~~i~l~DtpG~~~ 124 (381)
..++|+|+||||||||+|+|+|... +. +... + ||+....+.+ .....++||||+.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v---~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHF---PHGGDVIDSPGVRE 280 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEEC---TTSCEEEECHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEE---CCCCEecCcccHHH
Confidence 7999999999999999999999765 42 2222 1 3332222221 12235688888766
No 281
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.13 E-value=1e-06 Score=85.81 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=25.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhccc
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
++++....+ .++|+|+||||||||+++|.+..
T Consensus 53 ~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 53 QLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred eEEEecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 445556565 99999999999999999996543
No 282
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.10 E-value=1.2e-06 Score=82.27 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
+..|||+|+||||||||++.|+|...+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCchHHHHHHHHHhhccc
Confidence 489999999999999999999998755
No 283
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.10 E-value=8.4e-07 Score=82.88 Aligned_cols=55 Identities=27% Similarity=0.243 Sum_probs=35.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc-cccccc-------ceeeeecEEEEEcCEEeeecCcccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE-VASYEF-------TTLTCIPGVITYRGAKIQLLDLPGIIE 124 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~-~~~~~~-------tT~~~~~g~i~~~g~~i~l~DtpG~~~ 124 (381)
..++++|+||||||||+|+|+ ...+ .+.... ||..+ ..+...+ --.++|+||+..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~--~~~~~~~-~g~v~d~pg~~~ 228 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV--RLIPFGK-GSFVGDTPGFSK 228 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE--EEEEETT-TEEEESSCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE--EEEEcCC-CcEEEECcCcCc
Confidence 799999999999999999999 6543 233333 34322 1222211 124679999764
No 284
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.07 E-value=1.2e-05 Score=85.22 Aligned_cols=29 Identities=31% Similarity=0.397 Sum_probs=23.1
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHh
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLT 86 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~ 86 (381)
+++....+..++|+|+||||||||++.|+
T Consensus 643 Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 643 VSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred ceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 34444444899999999999999999964
No 285
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.05 E-value=1.1e-05 Score=85.66 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=23.6
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHh
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLT 86 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~ 86 (381)
++++....+..++|+|+||||||||++.|+
T Consensus 660 ~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 660 GIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred CceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 334444445899999999999999999964
No 286
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.04 E-value=8.8e-07 Score=82.71 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=33.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc-ccccc-------cceeeeecEEEEEcCEEeeecCcccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE-VASYE-------FTTLTCIPGVITYRGAKIQLLDLPGIIE 124 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~-~~~~~-------~tT~~~~~g~i~~~g~~i~l~DtpG~~~ 124 (381)
+..++|+|+||||||||+|+|+|...+ .+..+ .||.... .+... ...++||||+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHTS--GGLVADTPGFSS 236 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEET--TEEEESSCSCSS
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--HhhcC--CEEEecCCCccc
Confidence 379999999999999999999997654 23333 3444321 22332 235789999865
No 287
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.01 E-value=6.3e-07 Score=75.51 Aligned_cols=26 Identities=27% Similarity=0.169 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
+..++|+|+||||||||+++|+|.. +
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l-~ 58 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI-G 58 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT-T
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC-C
Confidence 3799999999999999999999987 5
No 288
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.97 E-value=3.6e-06 Score=78.51 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
..++++|+||||||||+|+|+|...+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 79999999999999999999998765
No 289
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.89 E-value=2.7e-06 Score=73.41 Aligned_cols=48 Identities=31% Similarity=0.356 Sum_probs=34.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc--cccccceeeeecEEEEEcCEEee
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV--ASYEFTTLTCIPGVITYRGAKIQ 115 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~--~~~~~tT~~~~~g~i~~~g~~i~ 115 (381)
..++|+|+||||||||+++|+|...+. .....||+.+..|.+ +|..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~ 51 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYN 51 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeee
Confidence 579999999999999999999976532 234466666766654 444333
No 290
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.87 E-value=4.5e-06 Score=71.62 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc--ccccccceeeeecEEEEEcCEEeeecC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE--VASYEFTTLTCIPGVITYRGAKIQLLD 118 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~--~~~~~~tT~~~~~g~i~~~g~~i~l~D 118 (381)
..++|+|++|||||||++.|++...+ ......||+.+..|. .+|..+.+++
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge--~~g~~~~~~~ 58 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE--ENGKNYYFVS 58 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C--CBTTTBEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc--cCCCeeEEeC
Confidence 69999999999999999999987542 244566777776664 3454444443
No 291
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.86 E-value=4.7e-06 Score=81.41 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g 87 (381)
+..|+++|++||||||++..|+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHH
Confidence 47999999999999999999974
No 292
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.84 E-value=2.2e-05 Score=74.80 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=34.3
Q ss_pred eecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCCC
Q 016864 102 CIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKP 155 (381)
Q Consensus 102 ~~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~~ 155 (381)
.....+.+++..+.++||+|..... .......++++++++|+|.++.
T Consensus 183 i~~~~~~~~~~~l~iwDt~GQe~~r-------~~w~~yf~~a~~iIfV~dls~~ 229 (353)
T 1cip_A 183 IVETHFTFKDLHFKMFDVGGQRSER-------KKWIHCFEGVTAIIFCVALSDY 229 (353)
T ss_dssp EEEEEEEETTEEEEEEEECCSGGGG-------GGGGGGCTTCSEEEEEEEGGGG
T ss_pred eEEEEEeeCCeeEEEEeCCCchhhh-------HHHHHHHhcCCEEEEEEECccc
Confidence 3344567788999999999976543 2223356899999999998863
No 293
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.84 E-value=3.5e-06 Score=73.51 Aligned_cols=50 Identities=36% Similarity=0.351 Sum_probs=34.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccc--cccccceeeeecEEEEEcCEEeeec
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEV--ASYEFTTLTCIPGVITYRGAKIQLL 117 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~--~~~~~tT~~~~~g~i~~~g~~i~l~ 117 (381)
..++|+||||||||||++.|+|..... .+...||+.+..|. .+|..+.++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~ 56 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFV 56 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEc
Confidence 689999999999999999999875321 23345566666665 345444443
No 294
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.80 E-value=4.9e-06 Score=74.26 Aligned_cols=49 Identities=24% Similarity=0.198 Sum_probs=25.7
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHh-cccccc-cccccceeeeecE
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLT-GTFSEV-ASYEFTTLTCIPG 105 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~-g~~~~~-~~~~~tT~~~~~g 105 (381)
+.+|++.. | ..++|+|+||||||||++.|+ |...++ .....+|+.+..|
T Consensus 19 ~~sl~v~~-G-~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g 69 (231)
T 3lnc_A 19 PGSMLKSV-G-VILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKG 69 (231)
T ss_dssp ---CCEEC-C-CEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTT
T ss_pred CCCcccCC-C-CEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcc
Confidence 55666655 4 799999999999999999999 875432 2223344444444
No 295
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.78 E-value=4.9e-05 Score=71.78 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=30.6
Q ss_pred EEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcC
Q 016864 105 GVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAI 153 (381)
Q Consensus 105 g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~ 153 (381)
..+.+++..++++||+|..... .......++++++++|+|.+
T Consensus 154 ~~~~~~~v~l~iwDtaGQe~~R-------~~w~~yy~~a~~iIfV~diS 195 (340)
T 4fid_A 154 YDFVVKDIPFHLIDVGGQRSER-------KXWVSFFSDVDCAIFVTSLA 195 (340)
T ss_dssp EEEESSSCEEEEEECCSCHHHH-------HHHHTTSCSCSEEEEEEEGG
T ss_pred EEEEeeeeeeccccCCCccccc-------ccHHHHhccCCEEEEEEECC
Confidence 3455567889999999975432 22233568999999999987
No 296
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.75 E-value=4.4e-05 Score=71.72 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=22.7
Q ss_pred eEEecCCcEEEEEcCCCCchHHHHHHHhc
Q 016864 59 DVTKSGDSRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 59 ~~~~~~~~~i~lvG~~naGKSTLln~L~g 87 (381)
++.... ...+|+|+||||||||+.+|..
T Consensus 19 ~l~~~~-g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 19 LIGFSD-RVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp EEECCS-SEEEEECCTTTCSTHHHHHHHH
T ss_pred EEecCC-CcEEEECCCCCcHHHHHHHHHH
Confidence 444434 3999999999999999999973
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.73 E-value=1.1e-05 Score=71.52 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
..++|+||||||||||+++|+|...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 8999999999999999999999865
No 298
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.73 E-value=6.7e-06 Score=75.96 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=37.9
Q ss_pred ccEEEEEecCCcCCHHHHHH----Hhc-CCCeeeecccccccHHHHHHHHHHHc
Q 016864 242 MPCIYVINKIDQITLEELEI----LDK-LPHYCPVSAHLEWNLDGLLEKIWEYL 290 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~l~~----l~~-~~~~v~vSa~~~~gl~~L~~~i~~~l 290 (381)
+|.++|+||+|+...+..+. +.+ ..+++++||.++.|+++|.+.+.+.+
T Consensus 51 kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 51 KPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp SCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred CCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHH
Confidence 79999999999997654333 222 24688999999999999988776654
No 299
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.73 E-value=4.6e-05 Score=72.81 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=30.2
Q ss_pred ecEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCC
Q 016864 103 IPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIK 154 (381)
Q Consensus 103 ~~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~ 154 (381)
....+.+++..+.++||+|...... .....+++++++++|+|.++
T Consensus 192 ~~~~~~~~~~~l~i~Dt~Gq~~~r~-------~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 192 HEYDFEIKNVPFKMVDVGGQRSERK-------RWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp EEEEEEETTEEEEEEEECC--------------CTTSCTTCCEEEEEEETTC
T ss_pred EEEEeeeCCeEEEEEeccchhhhhh-------hHHHHhCCCCEEEEEEECcc
Confidence 3345677889999999999855432 22334578999999999987
No 300
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.72 E-value=2.1e-05 Score=66.78 Aligned_cols=29 Identities=31% Similarity=0.280 Sum_probs=23.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhc
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g 87 (381)
+|++. .+..++|+|+||||||||++++.+
T Consensus 3 sl~i~--~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 3 KLTIP--ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEE--SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred cccCC--CCEEEEEECCCCCCHHHHHHHHcc
Confidence 44444 348999999999999999998654
No 301
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.70 E-value=3.5e-05 Score=71.76 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=32.3
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE
Q 016864 63 SGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA 112 (381)
Q Consensus 63 ~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~ 112 (381)
..+..++++|+|||||||+++.|+|...+ ..|.+.+.|.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~-----------~~g~V~l~g~ 136 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN-----------EGTKVLMAAG 136 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEECC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEee
Confidence 34489999999999999999999998766 5677776653
No 302
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.68 E-value=5.9e-05 Score=74.44 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=30.9
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC
Q 016864 63 SGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG 111 (381)
Q Consensus 63 ~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g 111 (381)
..+..++|+|+||||||||++.|+|...+ ..|.+.+.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~-----------~~G~V~l~g 328 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQ-----------QGKSVMLAA 328 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHH-----------TTCCEEEEC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhh-----------cCCeEEEec
Confidence 34489999999999999999999998766 556666643
No 303
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.67 E-value=1.6e-05 Score=70.40 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=23.7
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhccc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
+.+|++.. | ..++|+|+||||||||+++|+|..
T Consensus 15 ~isl~i~~-G-~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 15 VPRGSMNN-I-YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -------C-C-CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCceecCC-C-CEEEEECCCCCCHHHHHHHHHhhC
Confidence 55666654 3 799999999999999999999975
No 304
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.66 E-value=7.5e-06 Score=80.89 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=27.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
++++.... ..++|+|+||||||||+++|+|...+
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 34444545 79999999999999999999997655
No 305
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=97.65 E-value=3.3e-05 Score=56.50 Aligned_cols=52 Identities=19% Similarity=0.166 Sum_probs=45.8
Q ss_pred cEEecCCCCCHHHHHHHHHHHHHhcccEEEEecCCCccCCeeeCCCcccccCCCCCCCCC
Q 016864 309 PVILSSKKRTVEDFCERIHKDMVKQFKYALVWGSSAKHKPQRVGKEHELEDEXXXXXXXX 368 (381)
Q Consensus 309 ~~~~~~~~~~~~~~~~~i~~~~~~~f~~a~~~~~~~~~~~~rvg~~~~l~~~d~~~i~~~ 368 (381)
++.++. ++|+.|+|+.||+++.+++..|++ .|++|+.+|.|++||+|+|++.
T Consensus 17 ~~~lp~-GaT~~D~A~~Ih~~lg~~~v~AkV-------NG~~v~L~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 17 VISLPI-GSTVIDFAYAIHSAVGNRMIGAKV-------DGRIVPIDYKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEET-TCBHHHHHHHHCHHHHHTEEEEEE-------TTEEECTTCBCCTTCBEEEEEC
T ss_pred EEEecC-CCCHHHHHHHhhhhhhcceEEEEE-------CCEEcCCCcccCCCCEEEEEcc
Confidence 355555 599999999999999999999998 5579999999999999999986
No 306
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.65 E-value=1.2e-05 Score=73.42 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=31.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeee-cEEEEEcCEEe
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCI-PGVITYRGAKI 114 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~-~g~i~~~g~~i 114 (381)
..++|+|+||||||||+++|+|...+ . .|.+.+.|.++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~-----------~~~G~I~~~g~~i 64 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQ-----------TKSYHIITIEDPI 64 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHH-----------HCCCEEEEEESSC
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCC-----------CCCCEEEEcCCcc
Confidence 79999999999999999999998665 4 67777665443
No 307
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.63 E-value=4.5e-05 Score=72.69 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=32.1
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE
Q 016864 63 SGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA 112 (381)
Q Consensus 63 ~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~ 112 (381)
..+..++|+|+||||||||++.|+|...+ ..|.+.+.+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~-----------~~G~V~l~g~ 193 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN-----------EGTKVLMAAG 193 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEECC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccc-----------cCCEEEEecc
Confidence 34489999999999999999999998766 5677766553
No 308
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.63 E-value=2.3e-05 Score=68.70 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
+..++|+|+||||||||+++|+|...
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 37999999999999999999999864
No 309
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.62 E-value=3.9e-05 Score=65.92 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..++|+|+||||||||+++|++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 79999999999999999999986
No 310
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.60 E-value=2.6e-05 Score=66.85 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=22.1
Q ss_pred EEEEEcCCCCchHHHHHHHhcccc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
+++|+|+||||||||++.|+|...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999763
No 311
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.59 E-value=1.6e-05 Score=77.58 Aligned_cols=24 Identities=33% Similarity=0.284 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
+..|+++|+|||||||++..|+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999999843
No 312
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.58 E-value=3.4e-05 Score=72.80 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=32.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA 112 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~ 112 (381)
..++|+|+||||||||+++|+|...+ ..|.+.++|.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-----------~~g~i~i~~~ 207 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-----------EERIISIEDT 207 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-----------TSCEEEEESS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-----------CCcEEEECCe
Confidence 69999999999999999999998777 7788888764
No 313
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.55 E-value=1.5e-05 Score=68.00 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=29.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEeeecC
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLD 118 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~l~D 118 (381)
..++|+|++|||||||++.|++...+.+ ...|.+.+++..+.-+|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g--------~~~G~I~~dg~~i~~~~ 47 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERG--------LRVAVVKRHAHGDFEID 47 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTT--------CCEEEEEC---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcC--------CceEEEEEcCcccccCC
Confidence 5899999999999999999999876510 02688888877654444
No 314
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.53 E-value=2.9e-05 Score=68.07 Aligned_cols=26 Identities=46% Similarity=0.586 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
..|+|+|+||||||||++.|+|...+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999999998654
No 315
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.52 E-value=2.3e-05 Score=68.75 Aligned_cols=55 Identities=20% Similarity=0.055 Sum_probs=39.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc--ccccccceeeeecEEEEEcCEEeeecCccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE--VASYEFTTLTCIPGVITYRGAKIQLLDLPG 121 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~--~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG 121 (381)
+..|+|+||||||||||++.|++...+ ......||+.+..|. .+|..+.+++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e--~~g~~y~~~~~~~ 64 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE--QDGVDYYFRSREV 64 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC--CBTTTBEECCHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc--cCCceeEEecHHH
Confidence 379999999999999999999987643 344566777776664 2355555554433
No 316
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.51 E-value=8.5e-05 Score=69.15 Aligned_cols=46 Identities=30% Similarity=0.264 Sum_probs=34.1
Q ss_pred ccEEEEEecCCcCCHHH---HHH---Hh-c-CCCeeeecccccccHHHHHHHHH
Q 016864 242 MPCIYVINKIDQITLEE---LEI---LD-K-LPHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~---l~~---l~-~-~~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
+|.++|+||+|+.+... .+. .. . ..+++++||+++.|+++|.+.+.
T Consensus 111 ~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 111 VEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp CEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 69999999999986542 221 11 1 23689999999999999887654
No 317
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.49 E-value=5e-05 Score=65.93 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..++|+|+||||||||+++|+|..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 799999999999999999999874
No 318
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.48 E-value=6.8e-05 Score=71.20 Aligned_cols=42 Identities=29% Similarity=0.311 Sum_probs=33.4
Q ss_pred eeEEecCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE
Q 016864 58 FDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA 112 (381)
Q Consensus 58 ~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~ 112 (381)
+.+.+ +.+++|+|+||||||||+++|+|...+ ..|.+.+.|.
T Consensus 66 l~i~~--Gq~~gIiG~nGaGKTTLl~~I~g~~~~-----------~~g~i~~~G~ 107 (347)
T 2obl_A 66 LTCGI--GQRIGIFAGSGVGKSTLLGMICNGASA-----------DIIVLALIGE 107 (347)
T ss_dssp SCEET--TCEEEEEECTTSSHHHHHHHHHHHSCC-----------SEEEEEEESC
T ss_pred eeecC--CCEEEEECCCCCCHHHHHHHHhcCCCC-----------CEEEEEEecc
Confidence 44444 479999999999999999999998766 5677766554
No 319
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.48 E-value=4e-05 Score=71.19 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
+..++++|++|+||||+++.|++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998543
No 320
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.47 E-value=5.7e-05 Score=72.16 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcC
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRG 111 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g 111 (381)
.+..++|+|++|||||||+++|+|...+ ..|.+.++|
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~-----------~~g~I~ie~ 210 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF-----------DQRLITIED 210 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT-----------TSCEEEEES
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC-----------CceEEEECC
Confidence 3479999999999999999999998777 678887765
No 321
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.45 E-value=4e-05 Score=71.44 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA 112 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~ 112 (381)
+..|+|+|+||||||||++.|+|...+ ..|.+.+.|.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~-----------~~g~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN-----------LGKKVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT-----------TTCCEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh-----------cCCEEEEEee
Confidence 489999999999999999999998877 6677776654
No 322
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.42 E-value=6.3e-05 Score=67.70 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=23.8
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhccc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
+.+|++. .+..|||+|+||||||||++.|+|..
T Consensus 17 ~isl~i~--~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 17 NLYFQSM--RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ------C--CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceeccCC--CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444 44899999999999999999999864
No 323
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.35 E-value=8.9e-05 Score=72.63 Aligned_cols=39 Identities=28% Similarity=0.282 Sum_probs=33.5
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE
Q 016864 63 SGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA 112 (381)
Q Consensus 63 ~~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~ 112 (381)
..+.+++|+|+||||||||++.|+|...+ ..|.+.+.|.
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~-----------~~G~i~~~G~ 193 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA-----------DVIVVGLIGE 193 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCC-----------SEEEEEEESC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CeEEEEEece
Confidence 34489999999999999999999998766 7788887775
No 324
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.34 E-value=4.6e-05 Score=70.95 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCchHHHHHHHhccc
Q 016864 63 SGDSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 63 ~~~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..+..++|+|+||||||||+++|+|..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 344899999999999999999999974
No 325
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.33 E-value=5.8e-05 Score=71.09 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCE
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGA 112 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~ 112 (381)
.+..++++|+|||||||+++.|+|...+ ..|.+.+.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~-----------~~g~V~l~g~ 165 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN-----------HGFSVVIAAS 165 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH-----------TTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-----------cCCEEEEEee
Confidence 3489999999999999999999998766 5666666543
No 326
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.32 E-value=8.8e-05 Score=64.18 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
.+++|+|+||||||||++.|+|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 5899999999999999999999754
No 327
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.28 E-value=0.00011 Score=64.20 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
+..|+|+|++|||||||++.|+|...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 37999999999999999999999743
No 328
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.28 E-value=0.0001 Score=68.75 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
+..|||+|+||||||||++.|+|...
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 37999999999999999999999755
No 329
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.20 E-value=0.00018 Score=71.85 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
+..++++|+||||||||+++|+|...+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 357999999999999999999998766
No 330
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.19 E-value=1.4e-05 Score=71.22 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEE
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAK 113 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~ 113 (381)
..++|+|+||||||||+++|+|...+ ..|.+.++|..
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~-----------~~G~i~~~g~~ 64 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIP-----------DLTLLHFRNTT 64 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSC-----------CTTTC------
T ss_pred cEEEEECCCCCCHHHHHHHHhccccc-----------CCCeEEECCEE
Confidence 47899999999999999999998766 45555555544
No 331
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.18 E-value=8.2e-05 Score=64.17 Aligned_cols=53 Identities=28% Similarity=0.297 Sum_probs=40.4
Q ss_pred EEEEEcCCCCchHHHHHHHhcccc--cccccccceeeeecEEEEEcCEEeeecCccc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFS--EVASYEFTTLTCIPGVITYRGAKIQLLDLPG 121 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~--~~~~~~~tT~~~~~g~i~~~g~~i~l~DtpG 121 (381)
-|+|+||+|||||||++.|....+ ..-..+.||+.|-.|.+ +|..+.+++..-
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~e 57 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDE 57 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHH
Confidence 478999999999999999976543 23467899999988865 577776665433
No 332
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.15 E-value=0.00018 Score=64.22 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g 87 (381)
..++|+|+||||||||+++|++
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 8999999999999999999994
No 333
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.13 E-value=9.5e-05 Score=67.37 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=35.4
Q ss_pred ccEEEEEecCCcCCHHHHHH----HhcC-CCeeeecccccccHHHHHHHHHHH
Q 016864 242 MPCIYVINKIDQITLEELEI----LDKL-PHYCPVSAHLEWNLDGLLEKIWEY 289 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~l~~----l~~~-~~~v~vSa~~~~gl~~L~~~i~~~ 289 (381)
+|.++|+||+|+...+..+. +.+. .++ ++||.++.|+++|.+.+.+.
T Consensus 47 k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 47 KETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp SEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred CCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 79999999999997654332 2222 356 99999999999988876553
No 334
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.13 E-value=0.00025 Score=63.72 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHh---ccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLT---GTFSE 91 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~---g~~~~ 91 (381)
+..|+|+|+||||||||+++|+ |...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4799999999999999999999 76544
No 335
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.11 E-value=0.00013 Score=68.36 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=31.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccccccccccceeeeecEEEEEcCEEee
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQ 115 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~~~~~~~tT~~~~~g~i~~~g~~i~ 115 (381)
+.++|+|++|||||||+|.|.|... ...-.-+.+..|.+.++|..+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~---~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQH---GYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCC---CCCEEEECSSCCSCCEEEEEEC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcC---CCcEEEEEecCcccCccHHHHh
Confidence 5899999999999999999998741 0111112235666666665543
No 336
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.11 E-value=0.00045 Score=64.18 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=34.6
Q ss_pred ccEEEEEecCCcCCHHH---HHHHh-cC---CCeeeecccccccHHHHHHHHH
Q 016864 242 MPCIYVINKIDQITLEE---LEILD-KL---PHYCPVSAHLEWNLDGLLEKIW 287 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~---l~~l~-~~---~~~v~vSa~~~~gl~~L~~~i~ 287 (381)
+|.++|+||+|+..... .+.+. .+ ..++.+||+++.|++++++.+.
T Consensus 116 ~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 116 LETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp CEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred CCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 69999999999986533 22221 11 4689999999999999987764
No 337
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.09 E-value=0.00019 Score=61.48 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g 87 (381)
..++|+|+||||||||++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999986
No 338
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.09 E-value=0.00013 Score=71.02 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
..++|+|+||||||||+++|+|...+
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 68999999999999999999998665
No 339
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.09 E-value=0.00022 Score=62.82 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
..++|+|+||||||||++.|+|...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999998543
No 340
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.09 E-value=0.00024 Score=61.63 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
+..|+|+|+||||||||++.|++..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3799999999999999999998753
No 341
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.06 E-value=0.0003 Score=60.96 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|+|+|+|||||||+++.|++..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 799999999999999999999876
No 342
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.04 E-value=0.00015 Score=63.26 Aligned_cols=52 Identities=25% Similarity=0.263 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc--ccccccceeeeecEEEEEcCEEeeecCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE--VASYEFTTLTCIPGVITYRGAKIQLLDL 119 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~--~~~~~~tT~~~~~g~i~~~g~~i~l~Dt 119 (381)
..|+|+|++|||||||.+.|...... ....+.||+.+..|.+ +|..+.++|.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~--~g~~~~~~~~ 66 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKET--NGVDYYFVDK 66 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC--BTTTEEECCH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCC--CCcceeeCCH
Confidence 78999999999999999999875421 1234567777765543 3444445543
No 343
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.02 E-value=0.00027 Score=59.49 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|+|+|+|||||||+.+.|++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998864
No 344
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.02 E-value=0.00047 Score=58.58 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=24.9
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhccc
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
++++.... -..+|+|+||||||||+++|.+..
T Consensus 19 ~~~~~~~~-g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 19 KVVIPFSK-GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp CEEEECCS-SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEecCC-CcEEEECCCCCCHHHHHHHHHHHH
Confidence 33444444 389999999999999999997754
No 345
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.00 E-value=0.00026 Score=67.58 Aligned_cols=27 Identities=41% Similarity=0.592 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
+.+++|+|+||||||||+++|+|...+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 479999999999999999999998765
No 346
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=96.98 E-value=0.00081 Score=64.86 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=31.8
Q ss_pred EEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcCC
Q 016864 106 VITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIK 154 (381)
Q Consensus 106 ~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~~ 154 (381)
.+.+++..+.++||+|...... ......++++++++|+|.++
T Consensus 211 ~~~~~~v~l~iwDtaGQe~~r~-------~w~~yf~~a~~iIfV~dis~ 252 (402)
T 1azs_C 211 KFQVDKVNFHMFDVGGQRDERR-------KWIQCFNDVTAIIFVVASSS 252 (402)
T ss_dssp EEEETTEEEEEEEECCSGGGGG-------GGGGGTTTCCEEEEEEETTG
T ss_pred EeecCCccceecccchhhhhhh-------hhHhhccCCCEEEEEEECcc
Confidence 4567889999999999765432 22335689999999999876
No 347
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.93 E-value=0.00021 Score=68.48 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
+..++|+|+||||||||+++|+|...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 368999999999999999999997655
No 348
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.90 E-value=0.00029 Score=67.46 Aligned_cols=50 Identities=26% Similarity=0.327 Sum_probs=37.5
Q ss_pred ccEEEEEecCCcCCH----H----HHHHH-hc--C--CCeeeecccccccHHHHHHHHHHHcC
Q 016864 242 MPCIYVINKIDQITL----E----ELEIL-DK--L--PHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~----~----~l~~l-~~--~--~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+|.++|+||+|+... + ++... .. + ..++++||+++.|+++|.+.+.+.+.
T Consensus 99 ~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 99 NPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp SCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred CCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 699999999999753 1 22221 21 2 25789999999999999999987664
No 349
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.86 E-value=0.00049 Score=58.06 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|+|+|||||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 78999999999999999999875
No 350
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.85 E-value=0.00051 Score=59.53 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
+..|+|+|++||||||+.++|++..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999999864
No 351
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.82 E-value=0.00059 Score=59.07 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=22.8
Q ss_pred CCceeEEecCCcEEEEEcCCCCchHHHHHHHhccc
Q 016864 55 GEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 55 ~~~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
+.+|++. .+..|+|+|++||||||+.+.|++..
T Consensus 17 ~~~~~~~--~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 17 NLYFQSN--AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeEecC--CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4455544 34799999999999999999998653
No 352
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.81 E-value=0.0022 Score=60.10 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=31.5
Q ss_pred cEEEEEcCEEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcC
Q 016864 104 PGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAI 153 (381)
Q Consensus 104 ~g~i~~~g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~ 153 (381)
.-.+.+++..++++||+|...... ......++++++++|+|.+
T Consensus 159 ~~~~~~~~v~l~iwDtgGQe~~R~-------~w~~yf~~~~~iIfV~dls 201 (327)
T 3ohm_A 159 EYPFDLQSVIFRMVDVGGQRSERR-------KWIHCFENVTSIMFLVALS 201 (327)
T ss_dssp EEEEEETTEEEEEEEECCSHHHHT-------TGGGGCSSCSEEEEEEEGG
T ss_pred EEEEEeeceeeEEEEcCCchhHHH-------HHHHHhCCCCEEEEEEECc
Confidence 345667889999999999765432 2233568999999999775
No 353
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.79 E-value=0.00039 Score=69.72 Aligned_cols=46 Identities=11% Similarity=0.033 Sum_probs=34.3
Q ss_pred CCce-eEEecCCcEEEEEcCCCCchHHHHHH--HhcccccccccccceeeeecEEEEEcCEE
Q 016864 55 GEGF-DVTKSGDSRVGLVGFPSVGKSTLLNK--LTGTFSEVASYEFTTLTCIPGVITYRGAK 113 (381)
Q Consensus 55 ~~~~-~~~~~~~~~i~lvG~~naGKSTLln~--L~g~~~~~~~~~~tT~~~~~g~i~~~g~~ 113 (381)
+.++ .+.. | ..++|+|+||||||||++. ++|...+ ..|.+.+.|..
T Consensus 30 ~i~~G~i~~-G-e~~~l~G~nGsGKSTL~~~~ll~Gl~~~-----------~~g~i~v~g~~ 78 (525)
T 1tf7_A 30 DISHGGLPI-G-RSTLVSGTSGTGKTLFSIQFLYNGIIEF-----------DEPGVFVTFEE 78 (525)
T ss_dssp HHTTSSEET-T-SEEEEEESTTSSHHHHHHHHHHHHHHHH-----------CCCEEEEESSS
T ss_pred HhcCCCCCC-C-eEEEEEcCCCCCHHHHHHHHHHHHHHhC-----------CCCEEEEEEeC
Confidence 3455 5544 4 7999999999999999999 6787655 55677766543
No 354
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.75 E-value=0.00057 Score=58.02 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
..++|+|+||+|||||+++|++...
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998754
No 355
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.75 E-value=0.00056 Score=61.77 Aligned_cols=27 Identities=22% Similarity=0.147 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHh---ccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLT---GTFSE 91 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~---g~~~~ 91 (381)
+..|+|+|++||||||+++.|+ |...+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3799999999999999999999 65433
No 356
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.71 E-value=0.00064 Score=56.24 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
..++|+|+||+|||||++++++...+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 79999999999999999999986543
No 357
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.70 E-value=0.00077 Score=59.32 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
.+|+|+|++||||||+.+.|++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998753
No 358
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.68 E-value=0.00088 Score=58.13 Aligned_cols=22 Identities=41% Similarity=0.450 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g 87 (381)
..|+|+|++||||||+.+.|++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 359
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.66 E-value=0.00078 Score=59.82 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
+..|+|+|++|||||||++.|++.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 389999999999999999999986
No 360
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=96.66 E-value=0.0015 Score=62.04 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=25.4
Q ss_pred CEEeeecCcccccccccCCCcchhhhhcccCCcchhHHHHhcC
Q 016864 111 GAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAI 153 (381)
Q Consensus 111 g~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~il~vvd~~ 153 (381)
...+.++||+|...... ......++++++++|+|.+
T Consensus 182 ~v~l~iwDtaGQe~~r~-------~~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERR-------KWIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp --EEEEEEECCSTTGGG-------GTGGGCTTEEEEEEEEEGG
T ss_pred ceeeEEEECCCchhhhH-------HHHHHhCCCCEEEEEEECc
Confidence 36789999999755432 2223468999999999986
No 361
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.65 E-value=0.00088 Score=57.97 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g 87 (381)
.+|+|+|+|||||||+.+.|++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 362
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.62 E-value=0.00085 Score=63.80 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=23.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
..++++|+||||||||+++|+|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccC
Confidence 58999999999999999999998655
No 363
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.54 E-value=0.0011 Score=57.43 Aligned_cols=26 Identities=38% Similarity=0.594 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
..|+|+|++|||||||++.|.+...+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 79999999999999999999986543
No 364
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.50 E-value=0.00089 Score=58.79 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
..++|+|+||||||||++.|++...+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 79999999999999999999976543
No 365
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.47 E-value=0.00093 Score=61.58 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
+..++|+|+||+|||||++.|++...+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 379999999999999999999997655
No 366
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.47 E-value=0.0015 Score=56.80 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
+..|+|+|++||||||+.+.|.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3799999999999999999999864
No 367
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.45 E-value=0.0015 Score=61.23 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
...|||+|++|||||||++.|.+...
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999988754
No 368
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.43 E-value=0.0012 Score=60.33 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.8
Q ss_pred EEEEcCCCCchHHHHHHHhccc
Q 016864 68 VGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 68 i~lvG~~naGKSTLln~L~g~~ 89 (381)
++|+|+||+|||||+++|+|..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 9999999999999999999864
No 369
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.42 E-value=0.0016 Score=62.09 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=21.9
Q ss_pred eEEecCCcEEEEEcCCCCchHHHHHHHhc
Q 016864 59 DVTKSGDSRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 59 ~~~~~~~~~i~lvG~~naGKSTLln~L~g 87 (381)
++.... ...+|+|+|||||||||++|+.
T Consensus 18 ~i~~~~-g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 18 DIEFQS-GITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 334434 3678999999999999999973
No 370
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.33 E-value=0.003 Score=52.10 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCchHHHHHHHh
Q 016864 66 SRVGLVGFPSVGKSTLLNKLT 86 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~ 86 (381)
...+|+|+||+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999985
No 371
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.27 E-value=0.0017 Score=56.10 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|+|++||||||+.+.|++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 372
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.26 E-value=0.0032 Score=58.54 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
.+..|+++|+|||||||++..|++...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 4479999999999999999999987654
No 373
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.20 E-value=0.0025 Score=54.14 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..++++|++|||||||++.|.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 689999999999999999998764
No 374
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.19 E-value=0.0024 Score=53.22 Aligned_cols=23 Identities=30% Similarity=0.186 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|.|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999764
No 375
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.15 E-value=0.0026 Score=66.82 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=26.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhccc
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
++++. ..+..++|+||||+|||||+++++|..
T Consensus 600 disl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 600 PLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 44455 344899999999999999999999863
No 376
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.14 E-value=0.0027 Score=52.88 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCchHHHHHHH
Q 016864 66 SRVGLVGFPSVGKSTLLNKL 85 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L 85 (381)
..|+|+|+|||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 377
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.13 E-value=0.003 Score=60.01 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=24.2
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhc
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g 87 (381)
++++....+ ..+|+|+||+|||||+++|.+
T Consensus 19 ~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 19 PGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 345555443 999999999999999999975
No 378
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.11 E-value=0.0029 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|+|+|++||||||+.+.|.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998764
No 379
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.11 E-value=0.0023 Score=57.37 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=20.6
Q ss_pred EEEEcCCCCchHHHHHHHhccc
Q 016864 68 VGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 68 i~lvG~~naGKSTLln~L~g~~ 89 (381)
+.|+|+||+|||||+++|++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999864
No 380
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.11 E-value=0.0054 Score=57.33 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=25.4
Q ss_pred ecCCcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 62 KSGDSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 62 ~~~~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
...+..|+++|++|+||||++..|++...+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 334579999999999999999999987654
No 381
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.11 E-value=0.0016 Score=62.33 Aligned_cols=25 Identities=24% Similarity=0.094 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
.+..++|+|+||+|||||+++|++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4479999999999999999999974
No 382
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.10 E-value=0.00096 Score=62.06 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=30.2
Q ss_pred ccEEEEEecCCcCCHHH----HHHH---h-c-CCCeeeecccccccHHHHHH
Q 016864 242 MPCIYVINKIDQITLEE----LEIL---D-K-LPHYCPVSAHLEWNLDGLLE 284 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~----l~~l---~-~-~~~~v~vSa~~~~gl~~L~~ 284 (381)
+|.++|+||+|+.+.++ ++.+ + . ..+++++||.++.|+++|++
T Consensus 118 ~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 118 IQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp CEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred CCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 68899999999986532 2222 1 1 24788999999988776543
No 383
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.02 E-value=0.0029 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|+|+|||||||+.+.|+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 384
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.02 E-value=0.0036 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g 87 (381)
..|.|+|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 385
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.00 E-value=0.0027 Score=59.70 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..++|+|+||+|||||+++|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999999999865
No 386
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.98 E-value=0.0029 Score=57.04 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
+..|+|+|++||||||+.+.|++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 379999999999999999999875
No 387
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.98 E-value=0.0034 Score=55.51 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..++|+|+||+|||||+..|++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 79999999999999999999984
No 388
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.97 E-value=0.005 Score=60.02 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=38.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc-------------ccccccc--cceeeeecEEEEEc---------C--EEeeecCc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF-------------SEVASYE--FTTLTCIPGVITYR---------G--AKIQLLDL 119 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~-------------~~~~~~~--~tT~~~~~g~i~~~---------g--~~i~l~Dt 119 (381)
..|+++|+.++|||+|+|.|.+.. .+...++ .++..++.|..-|. | ..+.++||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 588999999999999999775311 0011111 13334466665552 2 46899999
Q ss_pred cccccc
Q 016864 120 PGIIEG 125 (381)
Q Consensus 120 pG~~~~ 125 (381)
.|+...
T Consensus 148 EG~~d~ 153 (457)
T 4ido_A 148 QGTFDS 153 (457)
T ss_dssp CCBTCT
T ss_pred cCCCCc
Confidence 998654
No 389
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.95 E-value=0.0038 Score=53.15 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
+..|+|+|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 378999999999999999999764
No 390
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.95 E-value=0.0037 Score=57.60 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhccccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
..|+|+|++|||||||.+.|.+...+
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 79999999999999999999886543
No 391
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.93 E-value=0.0032 Score=57.43 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=20.7
Q ss_pred EEEEcCCCCchHHHHHHHhccc
Q 016864 68 VGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 68 i~lvG~~naGKSTLln~L~g~~ 89 (381)
++|+|+||+|||||+++|++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999999864
No 392
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.87 E-value=0.0045 Score=52.51 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|.|++||||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999764
No 393
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.87 E-value=0.004 Score=54.12 Aligned_cols=22 Identities=23% Similarity=0.072 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g 87 (381)
..++|+|+||+|||||++.|++
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 7999999999999999999998
No 394
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.87 E-value=0.0046 Score=51.95 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|.|+|++||||||+.+.|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998653
No 395
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.86 E-value=0.0043 Score=53.25 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEEcCCCCchHHHHHHHhcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~ 88 (381)
.|+|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999864
No 396
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.86 E-value=0.0043 Score=52.76 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
+..|+|+|++||||||+.+.|+....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 37899999999999999999987643
No 397
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.85 E-value=0.0038 Score=65.15 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
+..++|+||||+|||||+++++|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4899999999999999999999864
No 398
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.80 E-value=0.0032 Score=66.98 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=25.8
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhcc
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
++++....+..++|+||||+|||||++.+.+.
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 45555444589999999999999999998754
No 399
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.75 E-value=0.0058 Score=59.47 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=24.0
Q ss_pred ecCCcEEEEEcCCCCchHHHHHHHhcccc
Q 016864 62 KSGDSRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 62 ~~~~~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
...+..++|+|+||+|||||+++|++...
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 33347999999999999999999987543
No 400
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.74 E-value=0.0057 Score=65.17 Aligned_cols=29 Identities=21% Similarity=0.090 Sum_probs=24.3
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHH
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKL 85 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L 85 (381)
++++....+..++|+||||+|||||++.+
T Consensus 654 disl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 654 DVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 45555554589999999999999999999
No 401
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.73 E-value=0.0055 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|.|+|++||||||+.+.|+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999754
No 402
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.73 E-value=0.0043 Score=55.06 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
+..|++.|++||||||+.+.|.....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 38999999999999999999987643
No 403
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.73 E-value=0.0053 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|.|+|+|||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 404
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.72 E-value=0.0055 Score=51.99 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|+|.|++||||||+.+.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999997643
No 405
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.72 E-value=0.0047 Score=57.08 Aligned_cols=27 Identities=30% Similarity=0.298 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
+..++++|+|||||||+++.|++...+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 379999999999999999999987653
No 406
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.71 E-value=0.0089 Score=51.92 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCchHHHHHHHh
Q 016864 66 SRVGLVGFPSVGKSTLLNKLT 86 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~ 86 (381)
...+|+|+||+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 588999999999999999984
No 407
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.70 E-value=0.0034 Score=63.11 Aligned_cols=27 Identities=33% Similarity=0.410 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
+..|+|+|+||||||||+++|++...+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 389999999999999999999998655
No 408
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.68 E-value=0.0051 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..++|+|+||+|||||+..|++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998743
No 409
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.67 E-value=0.005 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
.+|+|+|+|||||||+.+.|+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999999864
No 410
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.61 E-value=0.007 Score=57.28 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..++|+|+||+|||||++.|++..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 799999999999999999999875
No 411
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.60 E-value=0.0067 Score=51.54 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|.|+|||||||+.+.|...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 412
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.59 E-value=0.0066 Score=52.39 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|+|.|++||||||+.+.|....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999997653
No 413
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.58 E-value=0.0068 Score=52.07 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|+|.|++||||||+.+.|....
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998653
No 414
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.58 E-value=0.01 Score=56.22 Aligned_cols=45 Identities=27% Similarity=0.217 Sum_probs=33.5
Q ss_pred ccEEEEEecCCcCCHHH---HHH----Hhc-CCCeeeecccccccHHHHHHHH
Q 016864 242 MPCIYVINKIDQITLEE---LEI----LDK-LPHYCPVSAHLEWNLDGLLEKI 286 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~~---l~~----l~~-~~~~v~vSa~~~~gl~~L~~~i 286 (381)
+|.|+|+||+|+.+.+. ++. +.. ..+++++||.++.|+++|...+
T Consensus 161 ~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 161 VEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp CEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHH
T ss_pred CCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhc
Confidence 68899999999987654 222 222 2368999999999999987653
No 415
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.55 E-value=0.0064 Score=52.91 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~ 88 (381)
+|+|.|+|||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999654
No 416
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.54 E-value=0.007 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|+|++||||||+.+.|+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999754
No 417
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.53 E-value=0.0082 Score=56.50 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=19.2
Q ss_pred cEEEEEcCCCCchHHHHHHHh
Q 016864 66 SRVGLVGFPSVGKSTLLNKLT 86 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~ 86 (381)
...+|+|+||+|||||+.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999984
No 418
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.50 E-value=0.0069 Score=52.76 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~ 88 (381)
+|+|.|+|||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
No 419
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.48 E-value=0.0081 Score=51.49 Aligned_cols=24 Identities=29% Similarity=0.298 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
...|+|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 368999999999999999999865
No 420
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.48 E-value=0.0072 Score=52.78 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g 87 (381)
..|+|.|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999975
No 421
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.45 E-value=0.0078 Score=51.41 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|.|++||||||+.+.|+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999754
No 422
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.44 E-value=0.0081 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..++++|++|||||||++.|....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 689999999999999999998754
No 423
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.41 E-value=0.0088 Score=52.31 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
+..|+|+|+|||||||+.+.|+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999999754
No 424
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.41 E-value=0.008 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|.|.+||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 78999999999999999999754
No 425
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.40 E-value=0.0073 Score=50.95 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|.|+|++||||||+.+.|...
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 67999999999999999999743
No 426
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.38 E-value=0.0085 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|+|++||||||+.+.|+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999754
No 427
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.38 E-value=0.008 Score=52.29 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
..|+|+|++||||||+.+.|.+...
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999987654
No 428
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.38 E-value=0.008 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
+.+|+|+|++||||||+.+.|++.
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 379999999999999999999863
No 429
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.33 E-value=0.0089 Score=51.74 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|.|++||||||+.+.|...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999754
No 430
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.33 E-value=0.0094 Score=51.29 Aligned_cols=24 Identities=42% Similarity=0.476 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
+..|+|+|+|||||||+.+.|...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999754
No 431
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.32 E-value=0.0085 Score=53.93 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|+|+||||||||.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 36899999999999999999764
No 432
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.32 E-value=0.0077 Score=50.98 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
.+|+|+|+|||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 433
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.30 E-value=0.0056 Score=57.59 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=20.4
Q ss_pred EEEEEcCCCCchHHHHHHHhcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~ 88 (381)
.+.|.|+||+||||++++|++.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999984
No 434
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.27 E-value=0.0096 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|.|++||||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999753
No 435
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.25 E-value=0.004 Score=53.98 Aligned_cols=23 Identities=39% Similarity=0.732 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchHHHHHHHhccc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~ 89 (381)
.|+|+|++||||||+.+.|....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 436
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.25 E-value=0.0063 Score=54.69 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|.|+|+|||||||+.+.|....
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 789999999999999999998653
No 437
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.24 E-value=0.01 Score=49.30 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.0
Q ss_pred EEEEEcCCCCchHHHHHHHhcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~ 88 (381)
+|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 438
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.23 E-value=0.0048 Score=56.98 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
+..++++|++|+||||+...|++...+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 389999999999999999999987655
No 439
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=95.22 E-value=0.0047 Score=53.92 Aligned_cols=50 Identities=14% Similarity=-0.059 Sum_probs=36.1
Q ss_pred ccEEEEEecC-CcC---CHHHHH-H-----HhcCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 242 MPCIYVINKI-DQI---TLEELE-I-----LDKLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 242 ~p~i~v~NK~-Dl~---~~~~l~-~-----l~~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.|.++++||. |++ +..++. . +...-.+..+||.+|.|+.+-++++.+.+.
T Consensus 163 apLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 163 RPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp SCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred CeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 6999999995 665 344442 2 112224788999999999999999987654
No 440
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.20 E-value=0.0094 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|.|+|++||||||+.+.|+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999754
No 441
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.17 E-value=0.0084 Score=50.51 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=16.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|.|.|.|||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999754
No 442
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.17 E-value=0.011 Score=52.57 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|.|++||||||+.+.|+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999754
No 443
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.16 E-value=0.01 Score=50.32 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.1
Q ss_pred EEEEEcCCCCchHHHHHHHhcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~ 88 (381)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 444
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.16 E-value=0.01 Score=49.55 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|.|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 445
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.15 E-value=0.011 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhccc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~ 89 (381)
.|+|.|++||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997653
No 446
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.14 E-value=0.044 Score=50.26 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..+.|+|+||+||||+.++|++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999998764
No 447
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.12 E-value=0.0098 Score=59.77 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
..++|+|+||+|||||.++|++...
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 7899999999999999999988653
No 448
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.06 E-value=0.011 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~ 88 (381)
+|+|.|+|||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 449
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.05 E-value=0.012 Score=50.51 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
....|+|.|++||||||+.+.|...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999754
No 450
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.02 E-value=0.012 Score=54.14 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|.|+|+|||||||+.+.|...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999754
No 451
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.01 E-value=0.013 Score=52.95 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|.|+|+|||||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999764
No 452
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.99 E-value=0.013 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
.+|+|.|+|||||||+.+.|+..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 453
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.97 E-value=0.011 Score=53.04 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..+.|+|+||+|||||.++|++..
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 469999999999999999998753
No 454
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.96 E-value=0.014 Score=48.61 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
...|+|.|.+||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999754
No 455
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.94 E-value=0.012 Score=63.35 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
+..++|+||||+|||||++.+ |...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 479999999999999999999 7653
No 456
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.92 E-value=0.019 Score=54.73 Aligned_cols=50 Identities=22% Similarity=0.146 Sum_probs=37.0
Q ss_pred ccEEEEEecCCcCCHH----HH----HHH-h--cC--CCeeeecccccccHHHHHHHHHHHcC
Q 016864 242 MPCIYVINKIDQITLE----EL----EIL-D--KL--PHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 242 ~p~i~v~NK~Dl~~~~----~l----~~l-~--~~--~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
+|.++|+||+|+...+ .+ ... . .+ ..++.+||+++.|+++|++.+.+...
T Consensus 97 ~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 97 NKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp SCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 7999999999997432 22 211 1 12 15789999999999999999987654
No 457
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.91 E-value=0.014 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|+|+|||||||+.+.|+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999754
No 458
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.83 E-value=0.015 Score=51.18 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~ 88 (381)
.|+|.|+|||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 459
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.81 E-value=0.015 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEEcCCCCchHHHHHHHhcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~ 88 (381)
+|.|+|+|||||+|.-+.|+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999864
No 460
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.70 E-value=0.015 Score=49.91 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.5
Q ss_pred EEEEEcCCCCchHHHHHHHhcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~ 88 (381)
.|+|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999764
No 461
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.69 E-value=0.017 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|+|.+||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999754
No 462
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.63 E-value=0.019 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|.|+|+|||||+|..+.|+..
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57888999999999999999854
No 463
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.54 E-value=0.02 Score=50.55 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|.|+|++||||||+.+.|+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999754
No 464
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.52 E-value=0.021 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCchHHHHHHHhcc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
...|+|.|++||||||+.+.|...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999764
No 465
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.44 E-value=0.018 Score=57.58 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
+..++|+|+||+|||||++.++|...+
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 379999999999999999999987544
No 466
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.42 E-value=0.022 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCchHHHHHHHh
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLT 86 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~ 86 (381)
....|+|.|++||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999997
No 467
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=94.35 E-value=0.024 Score=51.87 Aligned_cols=50 Identities=14% Similarity=-0.059 Sum_probs=36.6
Q ss_pred ccEEEEEec-CCcC---CHHHHH-HH-----hcCCCeeeecccccccHHHHHHHHHHHcC
Q 016864 242 MPCIYVINK-IDQI---TLEELE-IL-----DKLPHYCPVSAHLEWNLDGLLEKIWEYLN 291 (381)
Q Consensus 242 ~p~i~v~NK-~Dl~---~~~~l~-~l-----~~~~~~v~vSa~~~~gl~~L~~~i~~~l~ 291 (381)
.|.++++|| -|+. +..++. .+ ...-.+..+||.+|+|+.+-++++.+.+.
T Consensus 248 apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 248 RPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp CCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred CeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 699999997 5776 334442 21 11123788999999999999999998775
No 468
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.32 E-value=0.025 Score=47.33 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..+.|.|++|+|||||.+.++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999997653
No 469
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.22 E-value=0.025 Score=48.52 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..+.|.|+||+|||||.++|....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998754
No 470
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.20 E-value=0.03 Score=53.31 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCchHHHHHHHh
Q 016864 66 SRVGLVGFPSVGKSTLLNKLT 86 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~ 86 (381)
-..+|+|+|||||||++.+|.
T Consensus 26 gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 588999999999999999984
No 471
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.19 E-value=0.026 Score=49.80 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..++|+|+||+|||||...++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997766543
No 472
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.14 E-value=0.025 Score=49.40 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..+.|.|+||+|||||.+++....
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998654
No 473
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.00 E-value=0.029 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCchHHHHHHHhc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g 87 (381)
..|.|+|+|||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 474
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.85 E-value=0.029 Score=52.95 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|+|+|+||+||||+.++|++..
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999998754
No 475
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.84 E-value=0.033 Score=49.33 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
.++||+|+|||||||+.+.|+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 69999999999999999999754
No 476
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.78 E-value=0.03 Score=48.95 Aligned_cols=24 Identities=33% Similarity=0.236 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|++-|++||||||+.+.|....
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 789999999999999999997654
No 477
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.76 E-value=0.031 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|.|.|+||+|||||.++|++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh
Confidence 579999999999999999998753
No 478
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.73 E-value=0.032 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..+.|.|+||+|||||.+++++..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 689999999999999999998754
No 479
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.69 E-value=0.027 Score=55.80 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=21.0
Q ss_pred EEEEEcCCCCchHHHHHHHhccc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~ 89 (381)
-+.|+|+||+|||||+++|++..
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999999864
No 480
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.57 E-value=0.036 Score=53.34 Aligned_cols=21 Identities=38% Similarity=0.354 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCchHHHHHHHh
Q 016864 66 SRVGLVGFPSVGKSTLLNKLT 86 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~ 86 (381)
..++|+|+||+|||||+..|+
T Consensus 179 ei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHH
Confidence 799999999999999999664
No 481
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.55 E-value=0.061 Score=46.47 Aligned_cols=29 Identities=31% Similarity=0.202 Sum_probs=24.3
Q ss_pred eEEecCCcEEEEEcCCCCchHHHHHHHhcc
Q 016864 59 DVTKSGDSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 59 ~~~~~~~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
.+...+ ..|.|+|++|+|||||...|...
T Consensus 29 ~v~~~g-~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 29 LVDIYG-LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEETT-EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHHHh
Confidence 455545 88999999999999999999754
No 482
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.42 E-value=0.033 Score=46.46 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..+.|.|++|+|||||.+.+....
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999997653
No 483
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.36 E-value=0.037 Score=49.28 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
+..|++.|++||||||+.+.|....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3789999999999999999997654
No 484
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.30 E-value=0.036 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEEcCCCCchHHHHHHHhccc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~ 89 (381)
.+.+.|+||+||||+++++++..
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998864
No 485
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.29 E-value=0.065 Score=43.47 Aligned_cols=24 Identities=29% Similarity=0.148 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|.|.|+||+|||++.++|....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999997653
No 486
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.20 E-value=0.044 Score=51.76 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.7
Q ss_pred EEEEEcCCCCchHHHHHHHhcccc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGTFS 90 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~~~ 90 (381)
.+.|.|+||+|||||++.+.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999999987653
No 487
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.18 E-value=0.049 Score=57.35 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|.|+|+||+|||||.++|++..
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 689999999999999999999864
No 488
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=93.08 E-value=0.023 Score=56.62 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=23.5
Q ss_pred ceeEEecCCcEEEEEcCCCCchHHHHHHHhc
Q 016864 57 GFDVTKSGDSRVGLVGFPSVGKSTLLNKLTG 87 (381)
Q Consensus 57 ~~~~~~~~~~~i~lvG~~naGKSTLln~L~g 87 (381)
++++.... -..+|+|+||||||||+.+|..
T Consensus 53 ~~~l~f~~-g~n~i~G~NGaGKS~lleAl~~ 82 (517)
T 4ad8_A 53 QLELELGG-GFCAFTGETGAGKSIIVDALGL 82 (517)
T ss_dssp CEEEECCC-SEEEEEESHHHHHHHHTHHHHH
T ss_pred eEEEecCC-CeEEEEcCCCCCHHHHHHHHHH
Confidence 34455544 3899999999999999999943
No 489
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.07 E-value=0.048 Score=49.40 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..+.|.|+||+|||||.+++++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999999998753
No 490
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.05 E-value=0.044 Score=51.53 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..+.|.|++|+|||||++.+.+..
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998754
No 491
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.03 E-value=0.048 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|+|++||||||+.+.|+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999764
No 492
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.00 E-value=0.034 Score=51.11 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.0
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..|+|.|++||||||+.+.|...
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999753
No 493
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.00 E-value=0.034 Score=48.30 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=19.8
Q ss_pred EEEEEcCCCCchHHHHHHHhcc
Q 016864 67 RVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 67 ~i~lvG~~naGKSTLln~L~g~ 88 (381)
.+.+.||||+||||+..+|+..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 494
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.99 E-value=0.032 Score=49.38 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..|++-|++||||||+.+.|....
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999997654
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.98 E-value=0.043 Score=49.37 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
+..|+|.|.+||||||+.+.|....
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3799999999999999999998653
No 496
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.98 E-value=0.046 Score=47.43 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..+.|.|++|+|||||++.+....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999997643
No 497
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.96 E-value=0.043 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCchHHHHHHHhccc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGTF 89 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~~ 89 (381)
..+.|.|+||+|||||++++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 478899999999999999998754
No 498
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.92 E-value=0.28 Score=47.50 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCchHHHHHHHhccccc
Q 016864 65 DSRVGLVGFPSVGKSTLLNKLTGTFSE 91 (381)
Q Consensus 65 ~~~i~lvG~~naGKSTLln~L~g~~~~ 91 (381)
+..|+++|++|+||||++..|++...+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 379999999999999999999987654
No 499
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.88 E-value=0.056 Score=48.14 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCchHHHHHHHhcc
Q 016864 66 SRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 66 ~~i~lvG~~naGKSTLln~L~g~ 88 (381)
..+.|.|+||+|||||.++++..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999875
No 500
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.87 E-value=0.054 Score=52.39 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCchHHHHHHHhcc
Q 016864 64 GDSRVGLVGFPSVGKSTLLNKLTGT 88 (381)
Q Consensus 64 ~~~~i~lvG~~naGKSTLln~L~g~ 88 (381)
....|.|+|+|||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999754
Done!