Query 016866
Match_columns 381
No_of_seqs 369 out of 3418
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:31:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016866.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016866hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 6.5E-37 1.4E-41 293.1 26.1 303 42-379 55-359 (381)
2 COG2524 Predicted transcriptio 99.8 1E-18 2.3E-23 152.7 12.9 122 239-381 172-293 (294)
3 COG2524 Predicted transcriptio 99.7 1.5E-16 3.3E-21 139.3 11.8 118 151-296 174-291 (294)
4 cd04641 CBS_pair_28 The CBS do 99.7 1E-15 2.2E-20 124.0 15.1 119 248-377 2-120 (120)
5 COG3448 CBS-domain-containing 99.7 6.6E-16 1.4E-20 137.7 11.2 127 240-380 246-373 (382)
6 COG3448 CBS-domain-containing 99.7 2.4E-15 5.3E-20 134.1 14.3 173 98-296 199-372 (382)
7 COG3620 Predicted transcriptio 99.7 1.2E-15 2.6E-20 124.1 11.1 120 240-380 66-185 (187)
8 cd04603 CBS_pair_KefB_assoc Th 99.6 9.3E-15 2E-19 116.7 13.1 110 248-377 2-111 (111)
9 cd04619 CBS_pair_6 The CBS dom 99.6 1.7E-14 3.6E-19 115.8 14.1 111 249-376 3-113 (114)
10 cd04618 CBS_pair_5 The CBS dom 99.6 9E-15 2E-19 114.3 11.8 95 248-377 2-98 (98)
11 cd04630 CBS_pair_17 The CBS do 99.6 5.5E-14 1.2E-18 112.6 14.4 112 248-377 2-114 (114)
12 PRK10892 D-arabinose 5-phospha 99.6 3.1E-14 6.8E-19 135.8 14.6 120 239-377 202-323 (326)
13 cd04617 CBS_pair_4 The CBS dom 99.6 6.2E-14 1.4E-18 113.1 14.2 112 248-376 2-117 (118)
14 cd04618 CBS_pair_5 The CBS dom 99.6 2.4E-14 5.3E-19 111.9 11.3 97 63-209 1-97 (98)
15 cd04593 CBS_pair_EriC_assoc_ba 99.6 8.9E-14 1.9E-18 111.5 14.5 112 248-377 2-115 (115)
16 cd04608 CBS_pair_PALP_assoc Th 99.6 2.1E-14 4.6E-19 117.2 11.0 113 248-378 3-124 (124)
17 cd04600 CBS_pair_HPP_assoc Thi 99.6 7E-14 1.5E-18 113.6 13.9 117 247-377 2-124 (124)
18 cd04623 CBS_pair_10 The CBS do 99.6 1.5E-13 3.3E-18 109.4 15.0 112 248-377 2-113 (113)
19 PRK11543 gutQ D-arabinose 5-ph 99.6 6.2E-14 1.3E-18 133.5 14.3 120 239-377 197-318 (321)
20 cd04627 CBS_pair_14 The CBS do 99.5 1.6E-13 3.4E-18 111.6 13.5 119 248-375 2-121 (123)
21 cd04642 CBS_pair_29 The CBS do 99.5 1.1E-13 2.5E-18 112.9 12.6 121 248-376 2-125 (126)
22 cd04614 CBS_pair_1 The CBS dom 99.5 1.1E-13 2.4E-18 107.6 12.0 95 248-377 2-96 (96)
23 cd04803 CBS_pair_15 The CBS do 99.5 2.1E-13 4.6E-18 110.4 13.9 116 248-377 2-122 (122)
24 cd04605 CBS_pair_MET2_assoc Th 99.5 3.9E-13 8.4E-18 106.7 15.1 108 247-376 2-109 (110)
25 cd04629 CBS_pair_16 The CBS do 99.5 1.6E-13 3.5E-18 109.6 12.9 113 248-377 2-114 (114)
26 cd04607 CBS_pair_NTP_transfera 99.5 2.7E-13 5.8E-18 108.3 14.2 110 248-376 3-112 (113)
27 cd04582 CBS_pair_ABC_OpuCA_ass 99.5 2.5E-13 5.5E-18 107.0 13.7 104 248-376 2-105 (106)
28 cd04643 CBS_pair_30 The CBS do 99.5 2.5E-13 5.4E-18 108.9 13.7 114 248-377 2-116 (116)
29 cd04801 CBS_pair_M50_like This 99.5 1.7E-13 3.6E-18 109.7 12.6 111 248-376 2-113 (114)
30 cd04624 CBS_pair_11 The CBS do 99.5 3.9E-13 8.4E-18 107.1 14.6 110 248-376 2-111 (112)
31 cd04639 CBS_pair_26 The CBS do 99.5 2.6E-13 5.5E-18 108.0 13.2 109 248-376 2-110 (111)
32 cd04631 CBS_pair_18 The CBS do 99.5 2.4E-13 5.3E-18 110.5 13.2 116 248-377 2-125 (125)
33 cd04626 CBS_pair_13 The CBS do 99.5 3.8E-13 8.2E-18 107.0 14.0 109 248-376 2-110 (111)
34 cd04615 CBS_pair_2 The CBS dom 99.5 4.7E-13 1E-17 106.8 14.4 111 248-376 2-112 (113)
35 cd04632 CBS_pair_19 The CBS do 99.5 4.1E-13 8.8E-18 109.9 14.3 117 248-377 2-128 (128)
36 cd04641 CBS_pair_28 The CBS do 99.5 3.2E-13 7E-18 109.2 13.5 119 157-293 1-119 (120)
37 cd04621 CBS_pair_8 The CBS dom 99.5 4.2E-13 9.2E-18 111.2 14.4 115 248-377 2-135 (135)
38 cd04596 CBS_pair_DRTGG_assoc T 99.5 2.8E-13 6E-18 107.4 12.7 105 248-376 3-107 (108)
39 PRK14869 putative manganese-de 99.5 9.5E-14 2.1E-18 141.4 12.4 289 49-377 62-391 (546)
40 COG2905 Predicted signal-trans 99.5 1.1E-13 2.5E-18 133.7 11.9 121 239-379 149-270 (610)
41 cd04613 CBS_pair_SpoIVFB_EriC_ 99.5 5.4E-13 1.2E-17 106.4 13.9 113 248-377 2-114 (114)
42 cd04635 CBS_pair_22 The CBS do 99.5 3.5E-13 7.7E-18 109.1 12.7 116 248-377 2-122 (122)
43 PRK07807 inosine 5-monophospha 99.5 3E-13 6.5E-18 133.8 14.3 115 241-379 91-205 (479)
44 cd04636 CBS_pair_23 The CBS do 99.5 5.5E-13 1.2E-17 109.8 13.8 126 248-377 2-132 (132)
45 PRK14869 putative manganese-de 99.5 9.3E-13 2E-17 134.2 18.2 194 154-378 73-303 (546)
46 cd04586 CBS_pair_BON_assoc Thi 99.5 4E-13 8.6E-18 111.1 12.7 115 248-377 3-135 (135)
47 cd04590 CBS_pair_CorC_HlyC_ass 99.5 8.3E-13 1.8E-17 105.0 14.1 108 248-376 2-110 (111)
48 cd04583 CBS_pair_ABC_OpuCA_ass 99.5 1E-12 2.2E-17 104.0 14.3 106 248-376 3-108 (109)
49 cd04588 CBS_pair_CAP-ED_DUF294 99.5 1E-12 2.2E-17 104.4 14.3 108 248-376 2-109 (110)
50 PRK05567 inosine 5'-monophosph 99.5 1.4E-12 3E-17 130.5 18.7 173 154-377 92-265 (486)
51 cd04604 CBS_pair_KpsF_GutQ_ass 99.5 7.7E-13 1.7E-17 105.5 13.5 111 248-376 3-113 (114)
52 cd04587 CBS_pair_CAP-ED_DUF294 99.5 7.2E-13 1.6E-17 105.7 13.3 111 248-376 2-112 (113)
53 cd04640 CBS_pair_27 The CBS do 99.5 5.7E-13 1.2E-17 108.8 12.9 112 248-376 2-125 (126)
54 COG3620 Predicted transcriptio 99.5 2.2E-13 4.8E-18 111.0 10.1 117 152-296 68-184 (187)
55 PRK15094 magnesium/cobalt effl 99.5 5.1E-13 1.1E-17 124.8 14.1 120 240-380 68-190 (292)
56 cd04595 CBS_pair_DHH_polyA_Pol 99.5 1.3E-12 2.8E-17 103.8 14.5 107 248-376 3-109 (110)
57 cd04603 CBS_pair_KefB_assoc Th 99.5 6.1E-13 1.3E-17 106.1 12.6 109 158-293 2-110 (111)
58 cd04633 CBS_pair_20 The CBS do 99.5 7.1E-13 1.5E-17 107.1 13.0 114 248-377 2-121 (121)
59 cd04612 CBS_pair_SpoIVFB_EriC_ 99.5 1E-12 2.2E-17 104.3 13.7 110 248-377 2-111 (111)
60 cd04800 CBS_pair_CAP-ED_DUF294 99.5 1.4E-12 3E-17 103.7 14.2 109 248-376 2-110 (111)
61 TIGR00400 mgtE Mg2+ transporte 99.5 3.6E-13 7.9E-18 133.5 13.1 172 146-377 128-304 (449)
62 cd04627 CBS_pair_14 The CBS do 99.5 9.4E-13 2E-17 107.0 13.3 121 158-293 2-122 (123)
63 cd04585 CBS_pair_ACT_assoc2 Th 99.5 1.1E-12 2.4E-17 105.8 13.5 115 248-377 2-122 (122)
64 cd04620 CBS_pair_7 The CBS dom 99.5 1.3E-12 2.9E-17 104.6 13.8 111 248-377 2-115 (115)
65 cd04589 CBS_pair_CAP-ED_DUF294 99.5 1.8E-12 3.8E-17 103.2 14.4 110 248-377 2-111 (111)
66 KOG1764 5'-AMP-activated prote 99.5 3.2E-12 6.9E-17 123.1 18.7 195 65-296 164-359 (381)
67 cd04611 CBS_pair_PAS_GGDEF_DUF 99.5 1.9E-12 4.1E-17 102.8 14.3 109 248-376 2-110 (111)
68 PRK01862 putative voltage-gate 99.5 7.4E-13 1.6E-17 135.6 14.6 123 240-379 448-571 (574)
69 cd04619 CBS_pair_6 The CBS dom 99.5 1.4E-12 3E-17 104.6 13.0 111 159-293 3-113 (114)
70 cd04625 CBS_pair_12 The CBS do 99.5 2.5E-12 5.5E-17 102.4 14.4 111 248-377 2-112 (112)
71 cd04606 CBS_pair_Mg_transporte 99.4 1E-12 2.3E-17 104.3 11.6 103 252-378 2-109 (109)
72 cd04600 CBS_pair_HPP_assoc Thi 99.4 1.7E-12 3.7E-17 105.3 12.8 122 157-293 2-123 (124)
73 cd04637 CBS_pair_24 The CBS do 99.4 1.8E-12 3.9E-17 105.0 12.8 115 248-377 2-122 (122)
74 cd04622 CBS_pair_9 The CBS dom 99.4 3.2E-12 6.8E-17 101.9 13.8 110 248-376 2-112 (113)
75 cd04617 CBS_pair_4 The CBS dom 99.4 1.8E-12 3.8E-17 104.6 12.0 111 158-293 2-117 (118)
76 PRK07807 inosine 5-monophospha 99.4 8.8E-12 1.9E-16 123.4 19.3 206 87-364 43-251 (479)
77 cd04602 CBS_pair_IMPDH_2 This 99.4 3.4E-12 7.3E-17 102.2 13.5 106 248-376 3-113 (114)
78 cd04802 CBS_pair_3 The CBS dom 99.4 5.6E-12 1.2E-16 100.4 14.7 110 248-376 2-111 (112)
79 cd04601 CBS_pair_IMPDH This cd 99.4 2.2E-12 4.7E-17 102.2 12.0 106 248-376 3-109 (110)
80 cd04609 CBS_pair_PALP_assoc2 T 99.4 3.7E-12 7.9E-17 100.8 13.1 109 248-377 2-110 (110)
81 TIGR03520 GldE gliding motilit 99.4 2.7E-12 5.9E-17 125.5 14.7 118 240-380 192-312 (408)
82 cd04630 CBS_pair_17 The CBS do 99.4 4.7E-12 1E-16 101.3 13.6 111 158-293 2-113 (114)
83 cd04599 CBS_pair_GGDEF_assoc2 99.4 4.4E-12 9.6E-17 99.6 13.2 103 248-376 2-104 (105)
84 cd04584 CBS_pair_ACT_assoc Thi 99.4 4.8E-12 1E-16 102.2 13.6 114 248-376 2-120 (121)
85 cd04610 CBS_pair_ParBc_assoc T 99.4 4.2E-12 9E-17 100.1 12.7 105 248-377 3-107 (107)
86 cd04594 CBS_pair_EriC_assoc_ar 99.4 4.6E-12 9.9E-17 99.8 12.7 100 250-376 4-103 (104)
87 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 1.7E-11 3.7E-16 121.2 19.6 205 88-365 43-250 (475)
88 cd04614 CBS_pair_1 The CBS dom 99.4 4E-12 8.6E-17 98.8 12.1 94 158-293 2-95 (96)
89 COG4109 Predicted transcriptio 99.4 1.3E-12 2.7E-17 119.6 10.5 115 240-378 189-305 (432)
90 cd02205 CBS_pair The CBS domai 99.4 9.1E-12 2E-16 98.2 13.9 112 248-377 2-113 (113)
91 cd04642 CBS_pair_29 The CBS do 99.4 5.2E-12 1.1E-16 103.1 12.9 124 158-293 2-125 (126)
92 COG0517 FOG: CBS domain [Gener 99.4 1.2E-11 2.6E-16 99.1 14.3 111 245-375 5-117 (117)
93 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 8.7E-12 1.9E-16 98.2 13.1 104 158-293 2-105 (106)
94 cd04639 CBS_pair_26 The CBS do 99.4 6.6E-12 1.4E-16 99.7 12.5 109 158-293 2-110 (111)
95 cd04623 CBS_pair_10 The CBS do 99.4 1E-11 2.2E-16 98.8 13.5 111 158-293 2-112 (113)
96 cd04605 CBS_pair_MET2_assoc Th 99.4 1.1E-11 2.3E-16 98.4 13.4 108 157-293 2-109 (110)
97 cd04607 CBS_pair_NTP_transfera 99.4 9.7E-12 2.1E-16 99.3 13.2 109 159-293 4-112 (113)
98 PRK07107 inosine 5-monophospha 99.4 3.6E-12 7.7E-17 126.9 12.9 107 249-377 107-218 (502)
99 TIGR00393 kpsF KpsF/GutQ famil 99.4 4.5E-12 9.8E-17 117.6 12.7 113 239-370 155-268 (268)
100 TIGR01303 IMP_DH_rel_1 IMP deh 99.4 5.5E-12 1.2E-16 124.7 13.6 113 242-379 91-203 (475)
101 cd04643 CBS_pair_30 The CBS do 99.4 7.9E-12 1.7E-16 100.0 12.1 114 158-293 2-115 (116)
102 cd04624 CBS_pair_11 The CBS do 99.4 1.4E-11 3E-16 98.0 13.5 110 158-293 2-111 (112)
103 cd04634 CBS_pair_21 The CBS do 99.4 1.6E-11 3.4E-16 102.8 14.1 126 248-376 2-142 (143)
104 cd04608 CBS_pair_PALP_assoc Th 99.4 3E-12 6.5E-17 104.5 9.5 113 157-294 2-123 (124)
105 TIGR01302 IMP_dehydrog inosine 99.4 7.7E-12 1.7E-16 123.8 14.2 112 244-378 85-200 (450)
106 cd04801 CBS_pair_M50_like This 99.4 8.1E-12 1.8E-16 99.9 11.6 109 158-293 2-113 (114)
107 PLN02274 inosine-5'-monophosph 99.4 9.6E-12 2.1E-16 124.0 14.6 111 245-378 106-221 (505)
108 TIGR00400 mgtE Mg2+ transporte 99.4 6.6E-12 1.4E-16 124.5 13.2 117 239-379 131-252 (449)
109 cd04803 CBS_pair_15 The CBS do 99.4 1.3E-11 2.8E-16 99.8 12.7 120 158-293 2-121 (122)
110 PRK05567 inosine 5'-monophosph 99.4 9.5E-12 2.1E-16 124.4 14.1 115 241-378 89-204 (486)
111 cd04631 CBS_pair_18 The CBS do 99.4 1.2E-11 2.6E-16 100.5 12.2 123 158-293 2-124 (125)
112 cd04593 CBS_pair_EriC_assoc_ba 99.4 1.9E-11 4.1E-16 97.9 13.2 111 158-293 2-114 (115)
113 cd04596 CBS_pair_DRTGG_assoc T 99.4 1.5E-11 3.2E-16 97.4 12.3 105 158-293 3-107 (108)
114 PRK11543 gutQ D-arabinose 5-ph 99.3 6.9E-12 1.5E-16 119.4 12.2 116 153-294 201-318 (321)
115 cd04598 CBS_pair_GGDEF_assoc T 99.3 2.5E-11 5.3E-16 97.7 13.3 113 248-376 2-118 (119)
116 cd04604 CBS_pair_KpsF_GutQ_ass 99.3 2.3E-11 5E-16 97.0 12.9 111 158-293 3-113 (114)
117 cd04591 CBS_pair_EriC_assoc_eu 99.3 2.2E-11 4.7E-16 96.3 12.5 100 248-377 3-105 (105)
118 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 2.3E-11 5E-16 96.1 12.7 106 158-293 3-108 (109)
119 cd04615 CBS_pair_2 The CBS dom 99.3 2.5E-11 5.3E-16 96.8 12.9 111 158-293 2-112 (113)
120 cd04585 CBS_pair_ACT_assoc2 Th 99.3 2.6E-11 5.6E-16 97.7 13.1 120 158-293 2-121 (122)
121 cd04629 CBS_pair_16 The CBS do 99.3 1.3E-11 2.7E-16 98.5 11.0 112 158-293 2-113 (114)
122 PRK10892 D-arabinose 5-phospha 99.3 9.7E-12 2.1E-16 118.7 12.1 116 152-294 205-323 (326)
123 cd04590 CBS_pair_CorC_HlyC_ass 99.3 2.5E-11 5.5E-16 96.4 12.7 109 158-293 2-110 (111)
124 cd04638 CBS_pair_25 The CBS do 99.3 4E-11 8.7E-16 94.5 13.4 104 248-376 2-105 (106)
125 cd04626 CBS_pair_13 The CBS do 99.3 2.4E-11 5.2E-16 96.5 12.2 109 158-293 2-110 (111)
126 cd04620 CBS_pair_7 The CBS dom 99.3 3E-11 6.5E-16 96.6 12.8 110 158-293 2-114 (115)
127 cd04636 CBS_pair_23 The CBS do 99.3 2.2E-11 4.8E-16 100.2 12.3 127 158-293 2-131 (132)
128 cd04586 CBS_pair_BON_assoc Thi 99.3 1.3E-11 2.7E-16 102.1 10.8 130 157-293 2-134 (135)
129 cd04800 CBS_pair_CAP-ED_DUF294 99.3 3.1E-11 6.7E-16 95.9 12.5 109 158-293 2-110 (111)
130 cd04611 CBS_pair_PAS_GGDEF_DUF 99.3 4.8E-11 1E-15 94.6 13.4 109 158-293 2-110 (111)
131 cd04621 CBS_pair_8 The CBS dom 99.3 3.2E-11 7E-16 99.9 12.8 129 158-293 2-134 (135)
132 cd04588 CBS_pair_CAP-ED_DUF294 99.3 5.3E-11 1.2E-15 94.3 13.4 108 158-293 2-109 (110)
133 PRK15094 magnesium/cobalt effl 99.3 8E-11 1.7E-15 110.0 16.4 164 50-265 64-227 (292)
134 COG0517 FOG: CBS domain [Gener 99.3 5.8E-11 1.2E-15 95.1 13.4 112 154-292 4-117 (117)
135 cd04587 CBS_pair_CAP-ED_DUF294 99.3 5.2E-11 1.1E-15 94.8 12.8 111 158-293 2-112 (113)
136 cd04633 CBS_pair_20 The CBS do 99.3 3.2E-11 7E-16 97.3 11.7 119 158-293 2-120 (121)
137 TIGR01137 cysta_beta cystathio 99.3 3.9E-11 8.4E-16 119.7 14.7 118 240-378 336-453 (454)
138 TIGR03520 GldE gliding motilit 99.3 9.3E-11 2E-15 114.7 16.8 161 51-266 189-349 (408)
139 PTZ00314 inosine-5'-monophosph 99.3 2.9E-11 6.3E-16 120.6 13.4 112 244-378 101-217 (495)
140 cd04613 CBS_pair_SpoIVFB_EriC_ 99.3 4.9E-11 1.1E-15 95.0 12.2 111 158-293 2-113 (114)
141 cd04602 CBS_pair_IMPDH_2 This 99.3 5.8E-11 1.3E-15 95.0 12.5 109 158-293 3-113 (114)
142 cd04635 CBS_pair_22 The CBS do 99.3 5.4E-11 1.2E-15 96.1 12.2 120 158-293 2-121 (122)
143 cd04595 CBS_pair_DHH_polyA_Pol 99.3 8.3E-11 1.8E-15 93.3 13.0 108 157-293 2-109 (110)
144 PRK07107 inosine 5-monophospha 99.3 6.5E-11 1.4E-15 117.9 14.8 110 159-294 107-218 (502)
145 cd04637 CBS_pair_24 The CBS do 99.3 7.3E-11 1.6E-15 95.4 12.5 120 158-293 2-121 (122)
146 cd04632 CBS_pair_19 The CBS do 99.3 6.9E-11 1.5E-15 96.6 12.5 124 158-293 2-127 (128)
147 COG2905 Predicted signal-trans 99.3 2.5E-11 5.4E-16 117.8 11.0 119 152-296 152-270 (610)
148 cd04601 CBS_pair_IMPDH This cd 99.3 6.6E-11 1.4E-15 93.6 11.7 107 157-293 2-109 (110)
149 cd04625 CBS_pair_12 The CBS do 99.3 1.3E-10 2.8E-15 92.4 13.1 110 158-293 2-111 (112)
150 cd04622 CBS_pair_9 The CBS dom 99.3 1.2E-10 2.7E-15 92.6 12.9 110 158-293 2-112 (113)
151 TIGR01302 IMP_dehydrog inosine 99.3 2.7E-10 6E-15 112.8 18.1 116 154-296 85-201 (450)
152 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 1.5E-10 3.3E-15 91.7 13.1 109 158-293 2-110 (111)
153 PLN02274 inosine-5'-monophosph 99.3 8.6E-11 1.9E-15 117.3 14.3 115 155-296 106-222 (505)
154 cd04640 CBS_pair_27 The CBS do 99.2 5.8E-11 1.3E-15 96.9 10.7 115 158-293 2-125 (126)
155 cd02205 CBS_pair The CBS domai 99.2 2E-10 4.3E-15 90.5 13.5 111 158-293 2-112 (113)
156 cd04592 CBS_pair_EriC_assoc_eu 99.2 9.9E-11 2.1E-15 96.8 12.0 110 248-361 2-118 (133)
157 cd04802 CBS_pair_3 The CBS dom 99.2 1.9E-10 4.1E-15 91.4 13.3 110 158-293 2-111 (112)
158 cd04599 CBS_pair_GGDEF_assoc2 99.2 1.5E-10 3.2E-15 90.9 12.4 102 158-292 2-103 (105)
159 cd04589 CBS_pair_CAP-ED_DUF294 99.2 1.7E-10 3.6E-15 91.7 12.7 109 158-293 2-110 (111)
160 cd04606 CBS_pair_Mg_transporte 99.2 1E-10 2.2E-15 92.7 11.3 102 162-294 2-108 (109)
161 cd04610 CBS_pair_ParBc_assoc T 99.2 2E-10 4.4E-15 90.4 12.8 105 157-293 2-106 (107)
162 PTZ00314 inosine-5'-monophosph 99.2 2.1E-10 4.4E-15 114.5 15.0 115 154-295 101-217 (495)
163 cd04609 CBS_pair_PALP_assoc2 T 99.2 1.8E-10 3.9E-15 91.0 11.9 108 158-293 2-109 (110)
164 cd04584 CBS_pair_ACT_assoc Thi 99.2 2.9E-10 6.3E-15 91.6 12.1 119 158-293 2-120 (121)
165 cd04594 CBS_pair_EriC_assoc_ar 99.2 3.2E-10 6.9E-15 89.2 11.8 100 160-293 4-103 (104)
166 PRK11573 hypothetical protein; 99.2 4.8E-10 1E-14 109.8 15.5 122 240-380 188-312 (413)
167 COG2239 MgtE Mg/Co/Ni transpor 99.2 2.6E-10 5.6E-15 111.3 13.4 122 145-297 128-254 (451)
168 PRK01862 putative voltage-gate 99.2 1.8E-10 4E-15 118.0 12.4 119 153-296 451-571 (574)
169 cd04634 CBS_pair_21 The CBS do 99.2 6.1E-10 1.3E-14 93.1 13.0 126 158-293 2-142 (143)
170 TIGR00393 kpsF KpsF/GutQ famil 99.1 2.7E-10 6E-15 105.6 11.2 109 153-287 159-268 (268)
171 cd04591 CBS_pair_EriC_assoc_eu 99.1 7.9E-10 1.7E-14 87.3 11.7 102 158-293 3-104 (105)
172 cd04598 CBS_pair_GGDEF_assoc T 99.1 1.4E-09 3E-14 87.4 11.0 113 158-293 2-118 (119)
173 cd04638 CBS_pair_25 The CBS do 99.1 3.3E-09 7.2E-14 83.4 12.4 104 158-293 2-105 (106)
174 COG4109 Predicted transcriptio 99.1 1.1E-09 2.3E-14 100.7 10.7 112 154-296 193-306 (432)
175 COG1253 TlyC Hemolysins and re 99.1 2.1E-09 4.5E-14 106.2 13.6 120 240-380 207-329 (429)
176 PRK11573 hypothetical protein; 99.0 9.2E-09 2E-13 100.8 17.3 165 51-265 185-349 (413)
177 COG2239 MgtE Mg/Co/Ni transpor 99.0 1.6E-09 3.4E-14 105.9 11.2 117 238-378 131-252 (451)
178 TIGR01137 cysta_beta cystathio 99.0 2.7E-09 5.8E-14 106.5 12.3 116 152-295 338-453 (454)
179 cd04592 CBS_pair_EriC_assoc_eu 99.0 4.8E-09 1E-13 86.7 10.9 113 158-279 2-118 (133)
180 PF00571 CBS: CBS domain CBS d 99.0 1.5E-09 3.4E-14 75.5 6.7 55 242-296 2-56 (57)
181 PF00571 CBS: CBS domain CBS d 99.0 1.8E-09 3.9E-14 75.2 6.6 54 326-380 4-57 (57)
182 TIGR01186 proV glycine betaine 98.8 2.6E-07 5.5E-12 89.0 17.6 110 247-380 250-359 (363)
183 COG1253 TlyC Hemolysins and re 98.8 3.2E-07 7E-12 90.7 16.7 129 51-216 204-332 (429)
184 PRK10070 glycine betaine trans 98.7 3.6E-07 7.7E-12 89.1 13.5 105 252-380 290-394 (400)
185 COG4536 CorB Putative Mg2+ and 98.7 2.1E-07 4.4E-12 86.7 10.9 121 240-380 201-325 (423)
186 KOG0474 Cl- channel CLC-7 and 98.6 8.7E-08 1.9E-12 94.2 7.4 137 240-377 583-745 (762)
187 COG4535 CorC Putative Mg2+ and 98.6 1.9E-07 4.1E-12 81.6 8.3 112 248-380 78-190 (293)
188 KOG2550 IMP dehydrogenase/GMP 98.5 1.7E-07 3.6E-12 88.0 7.2 107 248-377 117-226 (503)
189 COG4536 CorB Putative Mg2+ and 98.5 2.3E-06 4.9E-11 79.9 13.1 130 52-216 199-328 (423)
190 KOG2550 IMP dehydrogenase/GMP 98.5 1.9E-06 4.1E-11 81.1 11.6 166 83-293 57-225 (503)
191 TIGR01186 proV glycine betaine 98.4 3.8E-06 8.2E-11 81.0 14.0 109 158-297 251-359 (363)
192 PRK10070 glycine betaine trans 98.3 9.4E-06 2E-10 79.2 12.6 105 162-297 290-394 (400)
193 COG4535 CorC Putative Mg2+ and 98.1 2.8E-05 6.1E-10 68.2 9.7 146 53-237 67-212 (293)
194 cd04597 CBS_pair_DRTGG_assoc2 98.1 9.7E-06 2.1E-10 64.7 6.2 54 240-293 59-112 (113)
195 KOG0474 Cl- channel CLC-7 and 98.0 2.3E-05 5E-10 77.6 7.8 143 151-294 584-745 (762)
196 smart00116 CBS Domain in cysta 98.0 2.8E-05 6E-10 50.8 6.0 47 331-378 2-48 (49)
197 cd04597 CBS_pair_DRTGG_assoc2 97.9 3.9E-05 8.6E-10 61.2 6.5 50 326-376 63-112 (113)
198 smart00116 CBS Domain in cysta 97.8 7.7E-05 1.7E-09 48.6 6.2 47 249-295 2-48 (49)
199 KOG0475 Cl- channel CLC-3 and 97.6 0.00049 1.1E-08 68.6 11.1 127 249-378 558-694 (696)
200 COG4175 ProV ABC-type proline/ 97.3 0.0016 3.5E-08 60.3 9.7 169 155-380 214-384 (386)
201 KOG0475 Cl- channel CLC-3 and 96.9 0.015 3.3E-07 58.2 12.4 133 158-295 557-694 (696)
202 TIGR03415 ABC_choXWV_ATP choli 96.8 0.0053 1.1E-07 59.7 8.6 107 240-380 275-381 (382)
203 KOG0476 Cl- channel CLC-2 and 96.1 0.036 7.9E-07 56.8 9.9 59 153-215 592-650 (931)
204 COG1125 OpuBA ABC-type proline 95.4 0.14 3.1E-06 46.3 9.6 118 156-293 186-307 (309)
205 COG4175 ProV ABC-type proline/ 94.4 0.083 1.8E-06 49.3 5.6 91 166-296 293-383 (386)
206 COG1125 OpuBA ABC-type proline 93.9 0.56 1.2E-05 42.7 9.6 113 247-377 187-308 (309)
207 TIGR03415 ABC_choXWV_ATP choli 91.6 0.42 9E-06 46.6 6.2 48 247-296 333-380 (382)
208 KOG0476 Cl- channel CLC-2 and 86.4 1 2.2E-05 46.7 4.7 63 235-297 584-648 (931)
209 PRK11388 DNA-binding transcrip 72.8 11 0.00024 39.4 7.3 97 259-372 62-164 (638)
210 KOG2118 Predicted membrane pro 71.3 6.6 0.00014 39.7 5.0 113 242-374 207-324 (498)
211 PRK11388 DNA-binding transcrip 55.8 33 0.00073 35.9 7.0 101 169-287 62-162 (638)
212 KOG2118 Predicted membrane pro 54.6 33 0.00071 34.8 6.4 130 46-211 197-327 (498)
213 PF05198 IF3_N: Translation in 53.9 31 0.00066 25.2 4.5 30 270-299 12-41 (76)
214 PF05198 IF3_N: Translation in 35.2 77 0.0017 23.1 4.2 25 352-377 12-36 (76)
215 COG1559 Aminodeoxychorismate l 34.0 4.4E+02 0.0094 25.4 11.0 144 158-352 46-192 (342)
216 PF14827 Cache_3: Sensory doma 27.1 66 0.0014 25.2 2.9 18 271-288 92-109 (116)
217 COG2216 KdpB High-affinity K+ 26.8 93 0.002 31.6 4.3 37 338-376 413-449 (681)
218 COG0290 InfC Translation initi 23.4 1.3E+02 0.0029 25.7 4.1 31 269-299 17-47 (176)
219 PF14044 NETI: NETI protein 22.7 99 0.0021 21.1 2.6 21 333-353 3-23 (57)
220 PRK00028 infC translation init 20.8 1E+02 0.0022 26.5 3.1 31 269-299 18-48 (177)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=6.5e-37 Score=293.10 Aligned_cols=303 Identities=30% Similarity=0.543 Sum_probs=259.9
Q ss_pred HHHHHHHHhhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCC
Q 016866 42 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 121 (381)
Q Consensus 42 ~~~~~~~~l~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~ 121 (381)
+...++.|+..++||+.+|.+++++.+|..+++.+||++|..++.+++|+||....+++|+++..||+.++..++..+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~ 134 (381)
T KOG1764|consen 55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS 134 (381)
T ss_pred hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence 66899999999999999999999999999999999999999999999999999999999999999999998877764221
Q ss_pred C-ChhHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEE
Q 016866 122 L-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY 200 (381)
Q Consensus 122 ~-~~~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~g 200 (381)
. ..+.++...+..|++.....+ ....++++.+.|..++.++...+.+++++++||.| .+.+ .+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~ 200 (381)
T KOG1764|consen 135 LDNIEVLEDSQLSKRREVECLLK---------ETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLY 200 (381)
T ss_pred HHHHhhhhhhhccccchhhhhhc---------cccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceee
Confidence 1 223444444555554422221 12344559999999999999999999999999996 4567 8999
Q ss_pred EeehhhHHHHHhhhcccCCCCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCC
Q 016866 201 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND 280 (381)
Q Consensus 201 ils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g 280 (381)
++|++.|++++..+.+..+ ...++..++.++.+|+|. .+..+..++++.+|+++|.+.+++++||||+.|
T Consensus 201 ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g 270 (381)
T KOG1764|consen 201 ILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENG 270 (381)
T ss_pred ehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCC
Confidence 9999999999999887766 567889999999999997 688999999999999999999999999999999
Q ss_pred cEEEEEeHHHHHHHHhhhhhccccccccc-HHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEe
Q 016866 281 SLLDIYSRSDITALAKDKAYAQIHLDEMN-IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVE 359 (381)
Q Consensus 281 ~lvGiis~~Di~~l~~~~~~~~~~~~~~~-v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd 359 (381)
..+|+++..|+..+...+.|.... .+ +.+++..+. .-..++++|++++||.+++++|..+++||+||||
T Consensus 271 ~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd 340 (381)
T KOG1764|consen 271 KKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVD 340 (381)
T ss_pred ceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEEEEc
Confidence 999999999999999888776654 45 777776543 2234589999999999999999999999999999
Q ss_pred CCCCeEEEEEehHHHHHHhh
Q 016866 360 AGSKRVEGIISLSDVFRFLL 379 (381)
Q Consensus 360 ~~~~~liGiIs~~DIl~~l~ 379 (381)
+ +|+++|+||++||+.++.
T Consensus 341 ~-~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 341 E-DGVLVGVISLSDILSYLV 359 (381)
T ss_pred C-CCcEEEEeeHHHHHHHHH
Confidence 4 799999999999999985
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.79 E-value=1e-18 Score=152.74 Aligned_cols=122 Identities=18% Similarity=0.383 Sum_probs=111.9
Q ss_pred cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCC
Q 016866 239 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ 318 (381)
Q Consensus 239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~ 318 (381)
.+++++|.++++++.+++|+.+|.++|.++++++.||+|+ ++++|++|.+|+..+++++.+ +..|++
T Consensus 172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~------~~kV~~------ 238 (294)
T COG2524 172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNL------DAKVSD------ 238 (294)
T ss_pred chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCc------cccHHH------
Confidence 3567899999999999999999999999999999999995 599999999999998887654 367777
Q ss_pred CCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhcC
Q 016866 319 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLGV 381 (381)
Q Consensus 319 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~~ 381 (381)
+|.++++++..++.+.+|++.|..+++.||.|+|. +|+++|+||++||++.++++
T Consensus 239 -------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia~~ 293 (294)
T COG2524 239 -------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIAGL 293 (294)
T ss_pred -------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhhcc
Confidence 78889999999999999999999999999999994 79999999999999999864
No 3
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.70 E-value=1.5e-16 Score=139.27 Aligned_cols=118 Identities=19% Similarity=0.329 Sum_probs=106.2
Q ss_pred CCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccc
Q 016866 151 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 230 (381)
Q Consensus 151 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~ 230 (381)
++..|+++++++.+++|+.+|++++.+++++..||+|+ + +++|++|.+||...+...
T Consensus 174 V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g---------------- 230 (294)
T COG2524 174 VKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANG---------------- 230 (294)
T ss_pred hhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcC----------------
Confidence 45589999999999999999999999999999999975 4 799999999999977642
Q ss_pred cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866 231 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 296 (381)
Q Consensus 231 ~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~ 296 (381)
....+|+++|+++++++..++.+.||+++|..+++.++.|+|.+|+++|++|+.|++..++
T Consensus 231 -----~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 231 -----NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred -----CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 2334677789999999999999999999999999999999999999999999999998554
No 4
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.69 E-value=1e-15 Score=123.98 Aligned_cols=119 Identities=39% Similarity=0.661 Sum_probs=96.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+..+...+..... ..++.+.+.... .|
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~~~~~-------~~ 71 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNL---DLTVGEALERRS-------QD 71 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccc---cCCHHHHHhhcc-------cC
Confidence 57789999999999999999999999999989999999999999986543322111 123443222111 45
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+|++++
T Consensus 72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~~ 120 (120)
T cd04641 72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQF 120 (120)
T ss_pred CCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhcC
Confidence 557889999999999999999999999999994 6899999999999864
No 5
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.66 E-value=6.6e-16 Score=137.67 Aligned_cols=127 Identities=19% Similarity=0.371 Sum_probs=108.6
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 319 (381)
Q Consensus 240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~ 319 (381)
+..++|+++++++++++++.+|.++|.++++..+||+|++.+++|+++++|+.+-..-..+.++. .-
T Consensus 246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr-----------~~-- 312 (382)
T COG3448 246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLR-----------FL-- 312 (382)
T ss_pred cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhh-----------cc--
Confidence 45788999999999999999999999999999999999999999999999999854433332221 11
Q ss_pred CCCCcc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866 320 ANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380 (381)
Q Consensus 320 ~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~ 380 (381)
.....+ +|+.++.|+.++++..+.+-++.+.+.|.+||+|+ .|+++||||.+|++.+++.
T Consensus 313 ~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 313 RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred CCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHHH
Confidence 111232 99999999999999999999999999999999994 7999999999999998753
No 6
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.65 E-value=2.4e-15 Score=134.05 Aligned_cols=173 Identities=17% Similarity=0.258 Sum_probs=129.4
Q ss_pred cEEEEeehHHHHHHHHHhccCCCCCChhHHhhccHHH-HHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHH
Q 016866 98 RFVGVLSALDFILILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL 176 (381)
Q Consensus 98 ~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~ 176 (381)
+-+|+ +..|+-..++.++.-- ++..++++...-+. +....+..+.-.| .++|+++++++.+++++.+|.++|.
T Consensus 199 ~rvgf-s~~Dld~aL~~~~E~l-DIdrddLe~llr~~elqa~~R~~~~Ltc----adIMSrdVvtv~~~ts~dhA~~ll~ 272 (382)
T COG3448 199 QRVGF-SSEDLDAALQRLGETL-DIDRDDLERLLRETELQALRRRMGELTC----ADIMSRDVVTVSTDTSIDHARKLLQ 272 (382)
T ss_pred hccCC-CHHHHHHHHHhcCcee-cCCHHHHHHHHHHHHHHHHHHHhccccH----HHhcCccceecCCcCChHHHHHHHH
Confidence 44565 7789999998876532 34566666542211 1111111111122 2389999999999999999999999
Q ss_pred hCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccccccccccCCCceEecCCC
Q 016866 177 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA 256 (381)
Q Consensus 177 ~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~ 256 (381)
++++..+||+|+ .. +++|+++++|+++.... ...+.++.+ -.++++.+|+.++.++.+++
T Consensus 273 ~H~ikaLPV~d~---~~---rl~GiVt~~dl~~~a~~----------~p~qrlr~~----~~~~vk~imt~~v~tv~pdt 332 (382)
T COG3448 273 EHRIKALPVLDE---HR---RLVGIVTQRDLLKHARP----------SPFQRLRFL----RPPTVKGIMTTPVVTVRPDT 332 (382)
T ss_pred HcCccccccccc---cc---ceeeeeeHHHHhhccCc----------chHHHhhcc----CCCcccccccCcceeecCCC
Confidence 999999999976 44 79999999999883211 111222222 23577888999999999999
Q ss_pred CHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866 257 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 296 (381)
Q Consensus 257 ~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~ 296 (381)
+..+.+-.+.+.+.+++||+|++|+++|++|+.|++..+.
T Consensus 333 pa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 333 PAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred cHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence 9999999999999999999999999999999999998554
No 7
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.65 E-value=1.2e-15 Score=124.09 Aligned_cols=120 Identities=18% Similarity=0.385 Sum_probs=102.2
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 319 (381)
Q Consensus 240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~ 319 (381)
++..+|..+++++.+++++.++.++|.++++|.+||+++ |+++|-||..++.++.-++. ..+.+..+.+
T Consensus 66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~---e~i~~~~vr~------- 134 (187)
T COG3620 66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM---ESIRSLRVRE------- 134 (187)
T ss_pred eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---cchhhhhHHH-------
Confidence 344569999999999999999999999999999999985 99999999999999765432 1222456666
Q ss_pred CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866 320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380 (381)
Q Consensus 320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~ 380 (381)
+|+.++++++++.++..+-+++..++. +.|++ +|+++||||+.||++.+.+
T Consensus 135 ------vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 135 ------VMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE--NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred ------HhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe--CCceEEEEeHHHHHHHHhc
Confidence 889999999999999999988887764 77886 5999999999999999865
No 8
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.62 E-value=9.3e-15 Score=116.72 Aligned_cols=110 Identities=12% Similarity=0.271 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+...+ .. .+.++.+ +|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-~~-----~~~~v~~-------------~~ 62 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN-DY-----ETLKVCE-------------VY 62 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc-cc-----cccChhh-------------ee
Confidence 35688999999999999999999999999989999999999999874221 11 1234554 56
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
..++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||.+|++++
T Consensus 63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~~ 111 (111)
T cd04603 63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLRF 111 (111)
T ss_pred ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhcC
Confidence 667889999999999999999999999999994 6899999999999863
No 9
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.61 E-value=1.7e-14 Score=115.76 Aligned_cols=111 Identities=16% Similarity=0.293 Sum_probs=94.0
Q ss_pred ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccCC
Q 016866 249 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG 328 (381)
Q Consensus 249 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m~ 328 (381)
+.++.+++++.++++.|.+.+...+||+|++|+++|+++.+|+.+........ ..+.++.+ +|.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~---~~~~~v~~-------------~~~ 66 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGP---GCTAPVEN-------------VMT 66 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCC---cccCCHHH-------------Hhc
Confidence 56889999999999999999999999999999999999999998754321101 11345666 555
Q ss_pred CcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 329 QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 329 ~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
.++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+|+++
T Consensus 67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK 113 (114)
T ss_pred CCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence 67889999999999999999999999999994 689999999999975
No 10
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.61 E-value=9e-15 Score=114.34 Aligned_cols=95 Identities=15% Similarity=0.262 Sum_probs=85.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 326 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 326 (381)
.++++++++++.+|++.|.+++++++||+|++ |+++|++|..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 46789999999999999999999999999974 89999999999976211
Q ss_pred CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC-CeEEEEEehHHHHHH
Q 016866 327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRF 377 (381)
Q Consensus 327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~-~~liGiIs~~DIl~~ 377 (381)
+.++.+++++.+|++.|.+++++++||+|+ + |+++|+||.+|++++
T Consensus 52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~~ 98 (98)
T cd04618 52 ----LVSIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILKF 98 (98)
T ss_pred ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhcC
Confidence 458999999999999999999999999994 5 899999999999863
No 11
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.58 E-value=5.5e-14 Score=112.62 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=94.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 326 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 326 (381)
++.++.+++++.++++.|.+++.+.+||+|++ |+++|+++.+|+++.+...... ..+.++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~---~~~~~v~~-------------~ 65 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRD---PDRVNVYE-------------I 65 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCC---CCccCHHH-------------H
Confidence 56789999999999999999999999999987 8999999999998854322111 11245665 5
Q ss_pred CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
|..++.++++++++.++++.|.+.+.+.+||+| + |+++|+||..|++++
T Consensus 66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA 114 (114)
T ss_pred hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence 556789999999999999999999999999999 4 899999999999863
No 12
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.58 E-value=3.1e-14 Score=135.81 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=103.8
Q ss_pred cccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866 239 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 316 (381)
Q Consensus 239 ~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~ 316 (381)
.+++++|.+ ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+.+....+. .+.+.++.+
T Consensus 202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~---- 273 (326)
T PRK10892 202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIAD---- 273 (326)
T ss_pred CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHH----
Confidence 467888987 8999999999999999999999988899998999999999999987544221 122356666
Q ss_pred CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+|..++.++.+++++.+|++.|.+++++++||+| +++++|+||.+||+++
T Consensus 274 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 274 ---------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ---------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 7777899999999999999999999999999998 3799999999999975
No 13
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.58 E-value=6.2e-14 Score=113.14 Aligned_cols=112 Identities=21% Similarity=0.311 Sum_probs=93.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.+++++.++++.|..++.+++||+|++|+++|+++..|+.+....+. .+.+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~-------------~~ 64 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGV-------------IM 64 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHH-------------Hh
Confidence 5678999999999999999999999999998899999999999988654221 111345555 44
Q ss_pred CC--cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC--CeEEEEEehHHHHH
Q 016866 328 GQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~--~~liGiIs~~DIl~ 376 (381)
.. ++.++++++++.++++.|.+++++++||+|+++ |+++|+||.+|+++
T Consensus 65 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 65 TRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 32 578999999999999999999999999999532 69999999999875
No 14
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.57 E-value=2.4e-14 Score=111.89 Aligned_cols=97 Identities=44% Similarity=0.732 Sum_probs=85.6
Q ss_pred ccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhccHHHHHHHHHhh
Q 016866 63 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL 142 (381)
Q Consensus 63 ~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 142 (381)
+++++++++.|+.+|++.|.++++.++||+|+++++++|++|..|+.+.+
T Consensus 1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------ 50 (98)
T cd04618 1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------ 50 (98)
T ss_pred CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe------------------------------
Confidence 36899999999999999999999999999997657799999999986421
Q ss_pred hccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHH
Q 016866 143 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 209 (381)
Q Consensus 143 ~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~ 209 (381)
. ++++.+++++.+|+++|.+++++++||++++ +| +++|++|.+|+++
T Consensus 51 -------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--~~---~~~giit~~d~~~ 97 (98)
T cd04618 51 -------------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDPS--TG---TGLYILTSRRILK 97 (98)
T ss_pred -------------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC--CC---CceEEeehhhhhc
Confidence 1 5689999999999999999999999999762 36 8999999999976
No 15
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.57 E-value=8.9e-14 Score=111.51 Aligned_cols=112 Identities=20% Similarity=0.346 Sum_probs=94.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+...+.... ...++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~----~~~~~~~-------------~~ 64 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAG----EPSAVDE-------------VA 64 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccccc----ccccHHH-------------hc
Confidence 466889999999999999999999999999899999999999999865432110 0233444 55
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC--CeEEEEEehHHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS--KRVEGIISLSDVFRF 377 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~--~~liGiIs~~DIl~~ 377 (381)
..++.++.+++++.++++.|.+++.+++||+|+ + |+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA 115 (115)
T ss_pred cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence 567899999999999999999999999999994 5 799999999999864
No 16
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.57 E-value=2.1e-14 Score=117.21 Aligned_cols=113 Identities=14% Similarity=0.232 Sum_probs=94.4
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.+++++.++++.|.+++++++||+|++|+++|+++..|+++....+.... +.++.+ +|
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~----~~~v~~-------------im 65 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQP----SDPVSK-------------AL 65 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCC----CCcHHH-------------Hh
Confidence 5778999999999999999999999999998899999999999987544322111 356776 67
Q ss_pred CCcceEEcCCCCHHHHHHHHH---------hCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866 328 GQRCQMCLRSDPLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIISLSDVFRFL 378 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~---------~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l 378 (381)
..++.++.+++++.++.+.|. ..+.+++||+| ++|+++|+||..||++++
T Consensus 66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhhC
Confidence 778999999999999999653 33678888998 468999999999999875
No 17
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.57 E-value=7e-14 Score=113.57 Aligned_cols=117 Identities=21% Similarity=0.372 Sum_probs=95.5
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhccc------ccccccHHHHHhcCCCC
Q 016866 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI------HLDEMNIHQALQLGQDA 320 (381)
Q Consensus 247 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~------~~~~~~v~~~l~~~~~~ 320 (381)
+++.++.+++++.++++.|.+.+++++||+|++|+++|+++..|++........... .....++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-------- 73 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD-------- 73 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH--------
Confidence 367889999999999999999999999999988999999999999876543221000 000123333
Q ss_pred CCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 321 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 321 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+|..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||..|++++
T Consensus 74 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~~ 124 (124)
T cd04600 74 -----IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIAA 124 (124)
T ss_pred -----hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhcC
Confidence 66678999999999999999999999999999994 7999999999999864
No 18
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.56 E-value=1.5e-13 Score=109.41 Aligned_cols=112 Identities=21% Similarity=0.404 Sum_probs=94.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.++.++.++++.|.+.+++.+||+|++++++|+++..|+.+.+....... ...++.+ +|
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~---~~~~~~~-------------~~ 65 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASA---LDTPVSE-------------IM 65 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCc---cccCHHH-------------hc
Confidence 4667899999999999999999999999998899999999999998554321110 0235555 56
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||..|++++
T Consensus 66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 113 (113)
T cd04623 66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA 113 (113)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence 66789999999999999999999999999999 4 899999999999864
No 19
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.55 E-value=6.2e-14 Score=133.51 Aligned_cols=120 Identities=13% Similarity=0.184 Sum_probs=104.1
Q ss_pred cccccccCCC--ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866 239 PRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 316 (381)
Q Consensus 239 ~~v~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~ 316 (381)
.+|+++|.++ +.++++++++.+|++.|.+.+...+||+|++|+++|+++..|+.+....+... +.++.+
T Consensus 197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~-----~~~v~~---- 267 (321)
T PRK11543 197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGAL-----TTPVNE---- 267 (321)
T ss_pred hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCc-----CCcHHH----
Confidence 4678889988 99999999999999999999999999999999999999999998855422110 234555
Q ss_pred CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+|..++.++.+++++.+|++.|.++++.++||||+ +|+++|+||..|++++
T Consensus 268 ---------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 268 ---------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA 318 (321)
T ss_pred ---------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence 67778999999999999999999999999999994 6899999999999975
No 20
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.6e-13 Score=111.56 Aligned_cols=119 Identities=20% Similarity=0.291 Sum_probs=91.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 326 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 326 (381)
++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|++++...+....... +......+.. ..+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~ 73 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGL-DPLYPIPLRD-------LTI 73 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccch-hhhhhhhhhh-------ccc
Confidence 56789999999999999999999999999987 99999999999988654221110000 0000000000 014
Q ss_pred CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHH
Q 016866 327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVF 375 (381)
Q Consensus 327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl 375 (381)
|..++.++.+++++.+|++.|.+++.+++||+|+ +++++|+||.+|+-
T Consensus 74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~ 121 (123)
T cd04627 74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVR 121 (123)
T ss_pred CcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhh
Confidence 6678899999999999999999999999999994 68999999999973
No 21
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.54 E-value=1.1e-13 Score=112.94 Aligned_cols=121 Identities=21% Similarity=0.309 Sum_probs=93.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHH---HHhcCCCCCCCc
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ---ALQLGQDANPSL 324 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~---~l~~~~~~~~~~ 324 (381)
.+.++.+++++.++++.|.+++++++||+|++|+++|+++..|+++....+.... ..+... ...... ...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~ 74 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLL----LYRTITFKELSEKFT---DSD 74 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhhhcc---ccc
Confidence 4678999999999999999999999999998999999999999988654221110 001000 000000 001
Q ss_pred ccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 325 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 325 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..|..++.++.+++++.+|++.|.+++.+++||+|+ +++++|+||.+||++
T Consensus 75 ~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS 125 (126)
T ss_pred ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence 145668899999999999999999999999999994 689999999999986
No 22
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=1.1e-13 Score=107.64 Aligned_cols=95 Identities=15% Similarity=0.347 Sum_probs=85.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.++.++.+|++.|.+.+++.+||+|++|+++|+++.+|+.+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~-------------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS-------------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence 567899999999999999999999999999899999999999998721
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
.+.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+|++++
T Consensus 50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~~ 96 (96)
T cd04614 50 --EVVTATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLKP 96 (96)
T ss_pred --CcEEecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhcC
Confidence 1568999999999999999999999999994 5899999999999864
No 23
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=2.1e-13 Score=110.38 Aligned_cols=116 Identities=19% Similarity=0.322 Sum_probs=94.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhccc-----ccccccHHHHHhcCCCCCC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-----HLDEMNIHQALQLGQDANP 322 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~-----~~~~~~v~~~l~~~~~~~~ 322 (381)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+.......... .....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---------- 71 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE---------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHH----------
Confidence 56789999999999999999999999999988999999999999886543221100 001234444
Q ss_pred CcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 323 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 323 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+|..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||..|++++
T Consensus 72 ---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 72 ---VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLRL 122 (122)
T ss_pred ---hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhcC
Confidence 55567899999999999999999999999999994 6899999999999864
No 24
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=3.9e-13 Score=106.74 Aligned_cols=108 Identities=21% Similarity=0.436 Sum_probs=93.0
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 326 (381)
Q Consensus 247 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 326 (381)
+++.++.++.++.++++.|.+++.+.+||+|++|+++|+++..|+++....+. .++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~-------------~ 60 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVED-------------I 60 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHH-------------h
Confidence 36778999999999999999999999999998899999999999987544221 23444 4
Q ss_pred CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
|..++.++.+++++.++++.|.+++.+.+||+++ +|+++|+||..|+++
T Consensus 61 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~ 109 (110)
T cd04605 61 MTRNVITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDISK 109 (110)
T ss_pred cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence 5567889999999999999999999999999994 689999999999975
No 25
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=1.6e-13 Score=109.60 Aligned_cols=113 Identities=20% Similarity=0.293 Sum_probs=94.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++..|+.+.+....+... .+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~--~~~~v~~-------------~~ 66 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCD--GVATVRD-------------IM 66 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccC--CCccHHH-------------Hh
Confidence 46788999999999999999999999999989999999999999875543222110 1245555 55
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..||+++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA 114 (114)
T ss_pred ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence 55788999999999999999999999999999 4 899999999999864
No 26
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=2.7e-13 Score=108.35 Aligned_cols=110 Identities=18% Similarity=0.271 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
.+.++.++.++.++++.|.+.+.+.+||+|++|+++|+++.+|+.+....+... +.++.+ +|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~-----~~~v~~-------------~~ 64 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSL-----DDPVSE-------------VM 64 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCCc-----CCCHHH-------------hh
Confidence 356789999999999999999999999999899999999999998754422110 235665 45
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+||+.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 112 (113)
T cd04607 65 NRNPITAKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLLS 112 (113)
T ss_pred cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence 557889999999999999999999999999994 689999999999974
No 27
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.53 E-value=2.5e-13 Score=107.05 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=90.0
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.+++++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+... .++.+ +|
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~-------------~~ 57 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGD-------------HA 57 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhh-------------hc
Confidence 4678899999999999999999999999998899999999999986421 12333 45
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
...+.++.+++++.++++.|.+++...+||+| ++++++|+||..|+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVD-EDGRYVGEVTQRSIAD 105 (106)
T ss_pred ccCCEEECCCCCHHHHHHHHHHCCCCeeeEEC-CCCcEEEEEEHHHhhc
Confidence 55678899999999999999999999999999 4689999999999975
No 28
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=2.5e-13 Score=108.88 Aligned_cols=114 Identities=18% Similarity=0.292 Sum_probs=91.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhccc-ccccccHHHHHhcCCCCCCCccc
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-HLDEMNIHQALQLGQDANPSLGF 326 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~-~~~~~~v~~~l~~~~~~~~~~~~ 326 (381)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+.+.......... .+.+.++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~-------------~ 68 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVID-------------V 68 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHH-------------H
Confidence 46789999999999999999999999999988999999999999886543211110 000234554 5
Q ss_pred CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
|..++.++.+++++.++++.|.+.+ .+||+| ++|+++|+||..|++++
T Consensus 69 ~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 69 MNTDVPVIIDDADIEEILHLLIDQP--FLPVVD-DDGIFIGIITRREILKA 116 (116)
T ss_pred hcCCCceecCCCCHHHHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhcC
Confidence 5567889999999999999998865 599999 47899999999999864
No 29
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.53 E-value=1.7e-13 Score=109.74 Aligned_cols=111 Identities=22% Similarity=0.346 Sum_probs=90.3
Q ss_pred CceEecCCCCHHHHHHHHHhCC-CcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866 248 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 326 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 326 (381)
++.++++++++.++++.|.+++ .+.+||+|++|+++|+++..|+......... +.++.+++..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~------~~~v~~~~~~---------- 65 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQWA------QTTVIQVMTP---------- 65 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhcc------ccchhhhhcc----------
Confidence 5678999999999999997775 8999999988999999999999886542211 2345553211
Q ss_pred CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+++.+++||+|+ +++++|++|..||++
T Consensus 66 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 66 -AAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred -cccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 013668999999999999999999999999994 689999999999875
No 30
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.53 E-value=3.9e-13 Score=107.10 Aligned_cols=110 Identities=18% Similarity=0.357 Sum_probs=94.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.++.++.++++.|.+.+.+++||+|++|+++|+++..|+++.+..+... +.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~-----~~~v~~-------------~~ 63 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGIDL-----DTPVSE-------------IM 63 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCCC-----ccCHHH-------------hc
Confidence 466889999999999999999999999999889999999999998865533211 234554 55
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+++...+||+|+ +|++.|++|..|+++
T Consensus 64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~ 111 (112)
T cd04624 64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR 111 (112)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence 567889999999999999999999999999994 689999999999975
No 31
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=2.6e-13 Score=107.97 Aligned_cols=109 Identities=20% Similarity=0.357 Sum_probs=93.0
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....... +.++.+ +|
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~ 62 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP------DAPVRG-------------VM 62 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC------CCcHHH-------------Hh
Confidence 46678999999999999998999999999988999999999999886543211 234555 45
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+++.+++||+|+ +|+++|++|..|+.+
T Consensus 63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~ 110 (111)
T cd04639 63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE 110 (111)
T ss_pred cCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence 557889999999999999999999999999994 589999999999975
No 32
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=2.4e-13 Score=110.52 Aligned_cols=116 Identities=17% Similarity=0.288 Sum_probs=94.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcc-c------ccccccHHHHHhcCCC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQ-I------HLDEMNIHQALQLGQD 319 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~-~------~~~~~~v~~~l~~~~~ 319 (381)
++.++.++.++.+++++|.+.+.+.+||+|++ |+++|+++..|+...+.+..... . ...+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 74 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRS------- 74 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHH-------
Confidence 46788999999999999999999999999987 99999999999998655322100 0 000123333
Q ss_pred CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+|..++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||..||+++
T Consensus 75 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~~ 125 (125)
T cd04631 75 ------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLKA 125 (125)
T ss_pred ------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhcC
Confidence 55567899999999999999999999999999994 5899999999999874
No 33
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=3.8e-13 Score=107.05 Aligned_cols=109 Identities=17% Similarity=0.332 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.+++++.++.++++.|.+.+.+++||+|++|+++|+++..|+..+...... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~-------------~~ 63 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFN-------------IV 63 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHH-------------Hh
Confidence 46789999999999999999999999999988999999999999875442211 1235555 45
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|++.
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~ 110 (111)
T cd04626 64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD 110 (111)
T ss_pred cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence 56788999999999999999999999999999 4 89999999999874
No 34
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=4.7e-13 Score=106.80 Aligned_cols=111 Identities=20% Similarity=0.346 Sum_probs=93.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....... +.+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~~ 64 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVRE-------------VM 64 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHH-------------hc
Confidence 35678999999999999999999999999988999999999999874332211 11245555 55
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+++.+++||+|+ +|+++|++|..|+++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 65 NSPVITIDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR 112 (113)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence 567899999999999999999999999999994 689999999999975
No 35
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.52 E-value=4.1e-13 Score=109.88 Aligned_cols=117 Identities=23% Similarity=0.385 Sum_probs=93.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhh-ccc--------ccccccHHHHHhcCC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI--------HLDEMNIHQALQLGQ 318 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~-~~~--------~~~~~~v~~~l~~~~ 318 (381)
++.++.++.++.+++++|.+.+.+.+||+|++|+++|+++..|+..++....+ ... ...+.++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD------ 75 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH------
Confidence 46688999999999999999999999999988999999999999875432111 000 000122333
Q ss_pred CCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeC-CCCeEEEEEehHHHHHH
Q 016866 319 DANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEA-GSKRVEGIISLSDVFRF 377 (381)
Q Consensus 319 ~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~-~~~~liGiIs~~DIl~~ 377 (381)
+|..+++++.+++++.++++.|.+++.+.+||++. ++++++|+||.+|++++
T Consensus 76 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 76 -------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred -------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 66678899999999999999999999999999852 46899999999999863
No 36
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=3.2e-13 Score=109.23 Aligned_cols=119 Identities=22% Similarity=0.295 Sum_probs=92.9
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 236 (381)
Q Consensus 157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~ 236 (381)
++++++.+++++.+|++.|.+++.+++||+++ +| +++|+++..|++.+....... ....++...
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~---- 64 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEA---- 64 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHH----
Confidence 36789999999999999999999999999975 56 899999999999865322110 001111110
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
......|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|+++
T Consensus 65 --~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 65 --LERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred --HhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 0011234557789999999999999999999999999998899999999999875
No 37
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.51 E-value=4.2e-13 Score=111.24 Aligned_cols=115 Identities=15% Similarity=0.221 Sum_probs=93.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhccc-------------------ccccc
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI-------------------HLDEM 308 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~-------------------~~~~~ 308 (381)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++.......... ...+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 46688999999999999999999999999999999999999999986542211000 00012
Q ss_pred cHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 309 NIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 309 ~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
++.+ +|..++.++.+++++.++++.|.+++.+++||++ + |+++|+||.+|++++
T Consensus 82 ~v~~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~-~~~~Gvit~~di~~~ 135 (135)
T cd04621 82 VAED-------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD-N-DNIVGVITKTDICRE 135 (135)
T ss_pred cHHH-------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe-C-CEEEEEEEHHHHhhC
Confidence 3333 6777888999999999999999999999999999 4 899999999999863
No 38
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.51 E-value=2.8e-13 Score=107.42 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=91.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+..... +.++.+ +|
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~----------~~~v~~-------------~~ 59 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKDP----------DTTIEK-------------VM 59 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcccc----------cccHHH-------------Hh
Confidence 5778999999999999999999999999999999999999999975311 245666 45
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+++.+.+||+| ++|+++|++|..|+++
T Consensus 60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~di~~ 107 (108)
T cd04596 60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVD-DNKKLLGIISRQDVLK 107 (108)
T ss_pred cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc-CCCCEEEEEEHHHhhc
Confidence 55788999999999999999999999999999 4689999999999986
No 39
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.51 E-value=9.5e-14 Score=141.41 Aligned_cols=289 Identities=13% Similarity=0.169 Sum_probs=179.5
Q ss_pred Hhhh--CcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhH
Q 016866 49 FLST--HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE 126 (381)
Q Consensus 49 ~l~~--~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~ 126 (381)
++.+ .++.|++- .+++++++++++.+|++.|.+++++.+||+|++ ++++|++|..|+.+.+...... +.
T Consensus 62 ll~~~~~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~------~~ 132 (546)
T PRK14869 62 LIEDVKPQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP------EI 132 (546)
T ss_pred hhhccCCcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch------hh
Confidence 4444 56778773 479999999999999999999999999999965 5699999999999866532210 00
Q ss_pred Hhh--ccHHHHHHHHHhhhcccc------CCCCC-------------CCCC-CCceEeCCCCCHHHHHHHHHhCCcceEE
Q 016866 127 LET--HTISAWKVGKLQLNLKRQ------MDGNG-------------RPCP-RPLVQAGPYDSLKEVALKILQNKVATVP 184 (381)
Q Consensus 127 l~~--~~i~~~~~~~~~~~~~~~------~~~~g-------------~~~~-~~~i~v~~~~sl~~a~~~m~~~~i~~lp 184 (381)
+.. .++..+.+ .++.+.. ....+ ..+. ..++.+.... +....+.+.+++.++
T Consensus 133 ~~~~~~t~~~i~~---~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lI 206 (546)
T PRK14869 133 LSKSPTSLENIIR---TLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLI 206 (546)
T ss_pred hhhcCCCHHHHHH---hcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEE
Confidence 100 01111111 0000000 00000 0112 2355554443 334457888999999
Q ss_pred EEecCCCCCC------ccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccccccccccC-CCceEecCCCC
Q 016866 185 IIHSTGPAGS------CQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG-RPFAMLRPTAS 257 (381)
Q Consensus 185 Vvd~d~~~g~------~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~-~~~~~v~~~~~ 257 (381)
|+.+...... -..+..+.|..|.......-. ... .++++|. +++.+++++++
T Consensus 207 lt~g~~~~~~v~~la~~~~i~ii~t~~dt~~t~~~l~---------~~~------------~V~~iM~~~~~~~~~~~~~ 265 (546)
T PRK14869 207 ITGGAPVSEDVLELAKENGVTVISTPYDTFTTARLIN---------QSI------------PVSYIMTTEDLVTFSKDDY 265 (546)
T ss_pred ECCCCCCCHHHHHHHHhCCCeEEEecccHHHHHHHhh---------cCC------------CHHHhccCCCcEEECCCCc
Confidence 9865321100 003778888888877543211 122 3456698 88999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhc--ccccccccHHHHHhcCC----CCCCCcc-cCCCc
Q 016866 258 LGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--QIHLDEMNIHQALQLGQ----DANPSLG-FNGQR 330 (381)
Q Consensus 258 l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~--~~~~~~~~v~~~l~~~~----~~~~~~~-~m~~~ 330 (381)
+.++.+.|.+++++.+||+|++|+++|++|.+|++........- .... ...... +.... ....+.+ +++..
T Consensus 266 ~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~-~q~~~~-~~~~~i~~iiDHH~~~~~~~~~ 343 (546)
T PRK14869 266 LEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEK-SQAVEG-IEEAEILEIIDHHRLGDIQTSN 343 (546)
T ss_pred HHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccc-cccccc-hhhceEEEEecCCccCCCCCCC
Confidence 99999999999999999999999999999999999854421100 0000 000000 00000 0011122 55555
Q ss_pred ceEE---cCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 331 CQMC---LRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 331 ~~~v---~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
++.+ +...+..-+.+.|.+.++...|++. +.-+.||+|-++.+++
T Consensus 344 pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia--~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 344 PIFFRNEPVGSTSTIVARMYRENGIEPSPEIA--GLLLAAILSDTLLFKS 391 (546)
T ss_pred CcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCccC
Confidence 5444 4456777888999999998888776 3568899888887653
No 40
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.51 E-value=1.1e-13 Score=133.73 Aligned_cols=121 Identities=25% Similarity=0.377 Sum_probs=106.6
Q ss_pred cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh-hhhhcccccccccHHHHHhcC
Q 016866 239 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK-DKAYAQIHLDEMNIHQALQLG 317 (381)
Q Consensus 239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~-~~~~~~~~~~~~~v~~~l~~~ 317 (381)
.++++++..+++++++.+++.+|.+.|.+.|++++.++++++...||+|++|+....- ++... ..+|++
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~-----~~~V~e----- 218 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSK-----TQKVSE----- 218 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCc-----ccchhh-----
Confidence 4677888999999999999999999999999999999999999999999999998543 22111 245555
Q ss_pred CCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866 318 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379 (381)
Q Consensus 318 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~ 379 (381)
+|+.|++++..++-+.+|+-+|..+++++|||++ +|+++|+||.+||++.+-
T Consensus 219 --------vmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 219 --------VMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLFS 270 (610)
T ss_pred --------hhccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhhC
Confidence 8999999999999999999999999999999998 499999999999998764
No 41
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.50 E-value=5.4e-13 Score=106.39 Aligned_cols=113 Identities=19% Similarity=0.339 Sum_probs=94.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+...+... ....++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~v~~-------------~~ 64 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASD-------------IM 64 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc----cccEEHHH-------------hc
Confidence 46789999999999999999999999999988999999999999886543211 11245665 56
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
..++.++.+++++.++++.|...+.+++||+|++.++++|+++..|++++
T Consensus 65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~~ 114 (114)
T cd04613 65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLSA 114 (114)
T ss_pred cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhcC
Confidence 66789999999999999999999999999998315899999999999863
No 42
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=3.5e-13 Score=109.05 Aligned_cols=116 Identities=16% Similarity=0.296 Sum_probs=93.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhh-hccc----ccccccHHHHHhcCCCCCC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA-YAQI----HLDEMNIHQALQLGQDANP 322 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~-~~~~----~~~~~~v~~~l~~~~~~~~ 322 (381)
++.++.++.++.++++.|.+.+.+++||+|++|+++|+++..|+++...... .... .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 71 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEK---------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHH----------
Confidence 5678999999999999999999999999998899999999999987421110 0000 001233333
Q ss_pred CcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 323 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 323 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+|..++.++.+++++.++++.|.+++.+++||+|+ +|+++|++|..|++++
T Consensus 72 ---~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 72 ---IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLKA 122 (122)
T ss_pred ---HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhcC
Confidence 55667899999999999999999999999999994 6899999999999864
No 43
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.50 E-value=3e-13 Score=133.78 Aligned_cols=115 Identities=16% Similarity=0.242 Sum_probs=100.7
Q ss_pred cccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCC
Q 016866 241 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 320 (381)
Q Consensus 241 v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~ 320 (381)
+.++|.++++++.+++++.++++.|.+++++++||+|++++++|+++.+|+.... . ..++.+
T Consensus 91 v~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~------~----~~~V~d-------- 152 (479)
T PRK07807 91 SRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD------R----FTQVRD-------- 152 (479)
T ss_pred cccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc------c----CCCHHH--------
Confidence 3456888999999999999999999999999999999999999999999985421 0 134665
Q ss_pred CCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866 321 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379 (381)
Q Consensus 321 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~ 379 (381)
+|..++.++++++++.+|++.|.+++++++||+|+ +++++|+||.+||++...
T Consensus 153 -----iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 153 -----VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRATI 205 (479)
T ss_pred -----hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHhh
Confidence 67778999999999999999999999999999994 689999999999998653
No 44
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.50 E-value=5.5e-13 Score=109.82 Aligned_cols=126 Identities=16% Similarity=0.281 Sum_probs=93.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccc--cccccH--HHHHhcCCCCCCC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH--LDEMNI--HQALQLGQDANPS 323 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~--~~~~~v--~~~l~~~~~~~~~ 323 (381)
++.++.+++++.++++.|.+.+++++||+|++|+++|+++..|+.+........... ...... ++..+ +....+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 79 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIK--KLLGKK 79 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHH--HHcCCC
Confidence 467899999999999999999999999999889999999999998865422110000 000000 00000 000001
Q ss_pred cc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 324 LG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 324 ~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+. +|.+++..+.+++++.++++.|.+.+.+++||+| + |+++|++|..|++++
T Consensus 80 v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 80 VEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS 132 (132)
T ss_pred HHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence 21 5667889999999999999999999999999999 4 899999999999874
No 45
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.49 E-value=9.3e-13 Score=134.16 Aligned_cols=194 Identities=18% Similarity=0.177 Sum_probs=136.4
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCc-----
Q 016866 154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP----- 228 (381)
Q Consensus 154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~----- 228 (381)
+|.++++++.+++++.+|++.|.+++++.+||+|+ +| +++|++|..|+.+++....... .......+
T Consensus 73 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g---~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i~ 144 (546)
T PRK14869 73 LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDE---EG---KLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENII 144 (546)
T ss_pred hcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHHH
Confidence 67889999999999999999999999999999976 57 8999999999999776433110 00000011
Q ss_pred -----------------cccccccccc-cccccccCCC-ceEecCCCCHHHHHHHHHhCCCcEEEEEcCC----------
Q 016866 229 -----------------VSSIQLGTWV-PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDN---------- 279 (381)
Q Consensus 229 -----------------i~~l~ig~~~-~~v~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------- 279 (381)
.+.+.+|.-. ..+.+.+.+. ++.+ .+. .++...+.+.++++++|+...
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~-gdr--~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la 221 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIV-GDR--EDIQLAAIEAGVRLLIITGGAPVSEDVLELA 221 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEE-cCc--HHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 1111111100 1112233443 4444 333 344446788999999988643
Q ss_pred --CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccCC-CcceEEcCCCCHHHHHHHHHhCCCCEEE
Q 016866 280 --DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLV 356 (381)
Q Consensus 280 --g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~ 356 (381)
+.+.++.|..|.......-.. ..++.+ +|+ +++.++++++++.++.+.|.+++.+++|
T Consensus 222 ~~~~i~ii~t~~dt~~t~~~l~~------~~~V~~-------------iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~P 282 (546)
T PRK14869 222 KENGVTVISTPYDTFTTARLINQ------SIPVSY-------------IMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYP 282 (546)
T ss_pred HhCCCeEEEecccHHHHHHHhhc------CCCHHH-------------hccCCCcEEECCCCcHHHHHHHHHhcCCCceE
Confidence 247778888887765432110 356666 787 7899999999999999999999999999
Q ss_pred EEeCCCCeEEEEEehHHHHHHh
Q 016866 357 IVEAGSKRVEGIISLSDVFRFL 378 (381)
Q Consensus 357 Vvd~~~~~liGiIs~~DIl~~l 378 (381)
||| ++|+++|+||..|+++..
T Consensus 283 Vvd-~~g~lvGiit~~dl~~~~ 303 (546)
T PRK14869 283 VVD-EDGKVVGVISRYHLLSPV 303 (546)
T ss_pred EEc-CCCCEEEEEEHHHhhccc
Confidence 999 479999999999998753
No 46
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=4e-13 Score=111.13 Aligned_cols=115 Identities=23% Similarity=0.376 Sum_probs=93.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhc------cc------------cccccc
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA------QI------------HLDEMN 309 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~------~~------------~~~~~~ 309 (381)
++.++.++.++.++++.|.+.+.+++||+|++|+++|+++..|+.+....+... .. .....+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK 82 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence 677899999999999999999999999999889999999999998754322100 00 000122
Q ss_pred HHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 310 IHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 310 v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+.+ +|..++.++.+++++.++++.|.+.+.+++||+| +|+++|+||..|++++
T Consensus 83 v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~ 135 (135)
T cd04586 83 VAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA 135 (135)
T ss_pred HHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence 222 5666789999999999999999999999999999 4899999999999864
No 47
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.49 E-value=8.3e-13 Score=105.01 Aligned_cols=108 Identities=16% Similarity=0.361 Sum_probs=91.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 326 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 326 (381)
++.++.+++++.++++.|.+.+.+++||+|++ |+++|+++..|+.+....+.. ..++.. +
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~-------------~ 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRD-------------L 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHH-------------H
Confidence 46789999999999999999999999999987 999999999999986653221 123333 2
Q ss_pred CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
| .++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||..|+++
T Consensus 63 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 110 (111)
T cd04590 63 L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE 110 (111)
T ss_pred h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence 3 35789999999999999999999999999994 789999999999975
No 48
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.49 E-value=1e-12 Score=103.99 Aligned_cols=106 Identities=19% Similarity=0.309 Sum_probs=91.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++..+.++.++.++++.|.+.+..++||+|++|+++|+++..|+...... ..++.+ +|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---------~~~v~~-------------~~ 60 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---------AKSLED-------------IM 60 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---------CCcHhH-------------hh
Confidence 56788999999999999999999999999988999999999999875421 124444 45
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
...+.++++++++.++++.|.+.+.+++||+|+ +|+++|++|..|+++
T Consensus 61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~ 108 (109)
T cd04583 61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD 108 (109)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence 557889999999999999999999999999994 689999999999975
No 49
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.49 E-value=1e-12 Score=104.36 Aligned_cols=108 Identities=24% Similarity=0.372 Sum_probs=92.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.+++++.++++.|.+.+++++||+|+ |+++|+++..|+++....+.. ..++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~-------------~~ 61 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKD-------------VM 61 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHH-------------Hh
Confidence 5678999999999999999999999999997 999999999999986543211 134555 44
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||..|+++
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 109 (110)
T cd04588 62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR 109 (110)
T ss_pred cCCceEECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence 557899999999999999999999999999994 689999999999975
No 50
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.49 E-value=1.4e-12 Score=130.47 Aligned_cols=173 Identities=18% Similarity=0.231 Sum_probs=127.7
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866 154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 233 (381)
Q Consensus 154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ 233 (381)
.|..+++++.+++++.+|++.|.+++++++||+|+ .+ +++|+++.+|+.... ....
T Consensus 92 im~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~---~g---~lvGiVt~~DL~~~~------------~~~~------ 147 (486)
T PRK05567 92 GVVTDPVTVTPDTTLAEALALMARYGISGVPVVDE---NG---KLVGIITNRDVRFET------------DLSQ------ 147 (486)
T ss_pred cccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc---CC---EEEEEEEHHHhhhcc------------cCCC------
Confidence 67889999999999999999999999999999975 56 899999999996410 0111
Q ss_pred ccccccccccccC-CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHH
Q 016866 234 LGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ 312 (381)
Q Consensus 234 ig~~~~~v~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~ 312 (381)
.+.++|. .+++++.+++++.++++.|.+++++.+||+|++|+++|++|.+|+++...........-..+.+..
T Consensus 148 ------~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a 221 (486)
T PRK05567 148 ------PVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA 221 (486)
T ss_pred ------cHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe
Confidence 2344476 688999999999999999999999999999999999999999999986431100000000011111
Q ss_pred HHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 313 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 313 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
.| ...+ .-.+.++.|.+.+++. +++|..+++..|+++..+.++.
T Consensus 222 -------------ai-----~~~~--~~~e~a~~L~~agvdv-ivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 222 -------------AV-----GVGA--DNEERAEALVEAGVDV-LVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred -------------ec-----ccCc--chHHHHHHHHHhCCCE-EEEECCCCcchhHHHHHHHHHh
Confidence 12 2222 2278888999999994 5777546888888777666654
No 51
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.49 E-value=7.7e-13 Score=105.54 Aligned_cols=111 Identities=15% Similarity=0.301 Sum_probs=93.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.+++..... ....++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~-------------~~ 65 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVAD-------------VM 65 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHH-------------hh
Confidence 46678999999999999998889999999988999999999999987653221 11234555 45
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|..++.+.+||+|+ +++++|+|+..||++
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~ 113 (114)
T cd04604 66 TRNPKTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR 113 (114)
T ss_pred ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence 557889999999999999999999999999994 689999999999986
No 52
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.49 E-value=7.2e-13 Score=105.65 Aligned_cols=111 Identities=17% Similarity=0.308 Sum_probs=91.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.++.++.++++.|.+++.+.+||+|+ |+++|+++..|++.......... ...++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~v~~-------------i~ 64 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDP---ESTLVER-------------VM 64 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCc---CcCCHHH-------------hc
Confidence 5678899999999999999999999999997 99999999999985332111110 0135555 56
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|..++.+++||+|+ +++++|+||..|++.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence 667889999999999999999999999999994 689999999999975
No 53
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=5.7e-13 Score=108.83 Aligned_cols=112 Identities=21% Similarity=0.402 Sum_probs=88.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH-----hhhhhcccccccccHHHHHhcCCCCCC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA-----KDKAYAQIHLDEMNIHQALQLGQDANP 322 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~-----~~~~~~~~~~~~~~v~~~l~~~~~~~~ 322 (381)
++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+.+.. ..+. ..+.+.++.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v~~---------- 68 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGG---ISRSELTVAD---------- 68 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcC---CCchheEHHH----------
Confidence 467899999999999999999999999999889999999999998621 1110 0111345655
Q ss_pred CcccCCCcceEE------cCCCCHHHHHHHHHhCCCCEEEEEeCCC-CeEEEEEehHHHHH
Q 016866 323 SLGFNGQRCQMC------LRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFR 376 (381)
Q Consensus 323 ~~~~m~~~~~~v------~~~~tl~~~~~~m~~~~~~~l~Vvd~~~-~~liGiIs~~DIl~ 376 (381)
+|..+...+ .+++++.++++.|.+++.+++||+|+ + |+++|+||++||++
T Consensus 69 ---im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~ 125 (126)
T cd04640 69 ---VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR 125 (126)
T ss_pred ---hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence 454444333 36899999999999999999999994 5 79999999999985
No 54
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.48 E-value=2.2e-13 Score=110.99 Aligned_cols=117 Identities=23% Similarity=0.445 Sum_probs=99.7
Q ss_pred CCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866 152 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 231 (381)
Q Consensus 152 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~ 231 (381)
..+|..|++++.|++++.+|+++|.++|++.+||+++ + +++|-+|..+|.+.+.+.. ..+.+
T Consensus 68 ~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~---k~VGsItE~~iv~~~le~~-----------e~i~~ 129 (187)
T COG3620 68 KTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----D---KVVGSITENDIVRALLEGM-----------ESIRS 129 (187)
T ss_pred hhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----C---eeeeeecHHHHHHHHhccc-----------cchhh
Confidence 3489999999999999999999999999999999975 4 7999999999999775432 22233
Q ss_pred ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866 232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 296 (381)
Q Consensus 232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~ 296 (381)
+ ++.++|..+++++++++++..+.+++..+ .++.|+ ++|+++|+||+.|++++..
T Consensus 130 ~-------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 130 L-------RVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred h-------hHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHh
Confidence 3 56778999999999999999998888765 577788 5899999999999999765
No 55
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.48 E-value=5.1e-13 Score=124.76 Aligned_cols=120 Identities=13% Similarity=0.361 Sum_probs=100.9
Q ss_pred ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866 240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 316 (381)
Q Consensus 240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~ 316 (381)
+++++|.+ ++.++.+++++.++++.+.+++++++||++++ ++++|+++.+|++........ ..++.+
T Consensus 68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~------~~~l~~---- 137 (292)
T PRK15094 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE------AFSMDK---- 137 (292)
T ss_pred EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC------cCCHHH----
Confidence 55667887 68999999999999999999999999999875 799999999999864431110 123444
Q ss_pred CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866 317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380 (381)
Q Consensus 317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~ 380 (381)
+|. ++.++++++++.++++.|.+++.+.++|+| +.|.++|+||+.||+..++|
T Consensus 138 ---------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-e~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 138 ---------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG 190 (292)
T ss_pred ---------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-CCCCEEEEeEHHHHHHHHhC
Confidence 443 456899999999999999999999999999 47889999999999999986
No 56
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=1.3e-12 Score=103.76 Aligned_cols=107 Identities=23% Similarity=0.454 Sum_probs=92.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++..+.++.++.+.|.+.+.+++||+|+ |+++|+++..|+.+....+. ...++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~------~~~~~~~-------------~~ 62 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL------GHAPVKD-------------YM 62 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc------ccCcHHH-------------Hh
Confidence 6778999999999999999999999999997 99999999999987553221 1356666 55
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+++.+++||+| +|+++|+||..|+++
T Consensus 63 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 63 STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 56788999999999999999999999999999 489999999999975
No 57
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=6.1e-13 Score=106.15 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=90.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+++.+.+||+++ +| +++|+++..|+.+.... . ....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~---~------~~~~---------- 56 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDE---EN---KVLGQVTLSDLLEIGPN---D------YETL---------- 56 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHhhccc---c------cccc----------
Confidence 3578899999999999999999999999975 56 89999999999872110 0 0111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 57 --~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 57 --KVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred --ChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 234457778889999999999999999999999999998899999999999975
No 58
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=7.1e-13 Score=107.12 Aligned_cols=114 Identities=16% Similarity=0.346 Sum_probs=92.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcc------cccccccHHHHHhcCCCCC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ------IHLDEMNIHQALQLGQDAN 321 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~------~~~~~~~v~~~l~~~~~~~ 321 (381)
++.++.+++++.++++.|.+.+.+++||+|+ |+++|+++..|+.+......... ..+...++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD--------- 71 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH---------
Confidence 5678999999999999999999999999996 99999999999987544211100 0011223333
Q ss_pred CCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 322 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 322 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+|..++.++.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 72 ----IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY 121 (121)
T ss_pred ----HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence 5666889999999999999999999999999999 4 899999999999864
No 59
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.48 E-value=1e-12 Score=104.28 Aligned_cols=110 Identities=24% Similarity=0.356 Sum_probs=92.7
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+....+... ..++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~-----~~~~~~-------------~~ 62 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREA-----TVLVGD-------------VM 62 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCccc-----ccCHHH-------------hc
Confidence 5678999999999999999999999999997 9999999999998755432110 123333 55
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
..++.++.+++++.++++.|.+++.+++||+|+ +++++|+||..|++++
T Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~~ 111 (111)
T cd04612 63 TRDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLRA 111 (111)
T ss_pred cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhhC
Confidence 668899999999999999999999999999994 6899999999999863
No 60
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.48 E-value=1.4e-12 Score=103.72 Aligned_cols=109 Identities=20% Similarity=0.333 Sum_probs=91.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.++.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+.+........ .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~ 63 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGLD----PDTPVSE-------------VM 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCCC----ccCCHHH-------------Hh
Confidence 5678999999999999999999999999997 9999999999998743322111 1245555 45
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+++.+++||++ + |+++|++|..|+++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~ 110 (111)
T cd04800 64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR 110 (111)
T ss_pred CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence 56788999999999999999999999999999 4 89999999999985
No 61
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.47 E-value=3.6e-13 Score=133.48 Aligned_cols=172 Identities=13% Similarity=0.151 Sum_probs=133.4
Q ss_pred ccCCCCCCCCCCCceEeCCCCCHHHHHHHHHh-----CCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCC
Q 016866 146 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS 220 (381)
Q Consensus 146 ~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~-----~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~ 220 (381)
+..+.+|++|..+++++++++++.+|++.|.+ ++...++|+|+ ++ +++|+++.+|++.. .
T Consensus 128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~---~~---~l~GvV~l~dLl~a------~--- 192 (449)
T TIGR00400 128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE---SK---HLKGVLSIRDLILA------K--- 192 (449)
T ss_pred CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC---CC---eEEEEEEHHHHhcC------C---
Confidence 66677888999999999999999999999975 45678899965 46 79999999998651 0
Q ss_pred CCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhh
Q 016866 221 SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 300 (381)
Q Consensus 221 ~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~ 300 (381)
... .++++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|.+|+++...+..
T Consensus 193 ----~~~------------~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~~- 255 (449)
T TIGR00400 193 ----PEE------------ILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSEA- 255 (449)
T ss_pred ----CCC------------cHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhhh-
Confidence 011 244558888999999999999999999999999999999999999999999999765322
Q ss_pred cccccccccHHHHHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 301 AQIHLDEMNIHQALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 301 ~~~~~~~~~v~~~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
.++++. ....+..+++.+.+++..|.+++..+++|. .+.|++| ..++..
T Consensus 256 ---------~ed~~~-------------~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~-----~~~~~~t-~~ii~~ 304 (449)
T TIGR00400 256 ---------TEDFYM-------------IAAVKPLDDSYFDTSILVMAKNRIIWLLVL-----LVSSTFT-ATIISN 304 (449)
T ss_pred ---------HHHHHH-------------hcCCCCCcchhhhchHHHHHHhccchHHHH-----HHHHHHH-HHHHHH
Confidence 133222 123344567888999999999999887765 2456665 555443
No 62
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=9.4e-13 Score=106.98 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=92.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
++.++.+++++.+|++.|.+++++++||+|+ .+| +++|+++..|+++++................++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~-------- 68 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPL-------- 68 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhh--------
Confidence 5678999999999999999999999999976 226 799999999999876543211100000000000
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
...+.|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|+..
T Consensus 69 --~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 69 --RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred --hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence 112236678889999999999999999999999999998899999999999853
No 63
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.47 E-value=1.1e-12 Score=105.84 Aligned_cols=115 Identities=23% Similarity=0.329 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccc------cccccHHHHHhcCCCCC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH------LDEMNIHQALQLGQDAN 321 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~------~~~~~v~~~l~~~~~~~ 321 (381)
++.++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|+............. ..+.++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD--------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence 4678999999999999999999999999997 9999999999998865422110000 00122333
Q ss_pred CCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 322 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 322 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+|..++.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||..||+++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~~ 122 (122)
T cd04585 72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFRA 122 (122)
T ss_pred ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhhC
Confidence 56678899999999999999999999999999994 6899999999999863
No 64
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.47 E-value=1.3e-12 Score=104.59 Aligned_cols=111 Identities=18% Similarity=0.312 Sum_probs=89.6
Q ss_pred CceEecCCCCHHHHHHHHHhCC-CcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866 248 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 326 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 326 (381)
++.++.++.++.++++.|.+.+ ...+||+| +|+++|+++..|+.+....+.. ..+.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-------------~ 63 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGE-------------V 63 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHH-------------h
Confidence 4567899999999999998888 66777777 6999999999999885543211 11245555 5
Q ss_pred CCCcceEEcCC--CCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 327 NGQRCQMCLRS--DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 327 m~~~~~~v~~~--~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
|..++.++.++ +++.++++.|.+++.+++||+|+ +|+++|+||..|++++
T Consensus 64 ~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~~ 115 (115)
T cd04620 64 MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQV 115 (115)
T ss_pred cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhcC
Confidence 55577888887 79999999999999999999994 6899999999999863
No 65
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.47 E-value=1.8e-12 Score=103.17 Aligned_cols=110 Identities=18% Similarity=0.288 Sum_probs=92.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
+++++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|+......+... .+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~----~~~~i~~-------------~~ 63 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLP----SSTPVGE-------------IA 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCC----CCCCHHH-------------Hh
Confidence 4567899999999999999999999999997 8999999999998755422111 1245555 45
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
..++.++++++++.++++.|.+++.+++||+| + ++++|+||..|++++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~dl~~~ 111 (111)
T cd04589 64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE-G-GEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCcEEECCCCcHHHHHHHHHHhCccEEEEee-C-CEEEEEEEhHHhhcC
Confidence 55788999999999999999999999999999 3 899999999999864
No 66
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.47 E-value=3.2e-12 Score=123.10 Aligned_cols=195 Identities=17% Similarity=0.177 Sum_probs=147.1
Q ss_pred EEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhccHHHHHHHHHhhhc
Q 016866 65 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL 144 (381)
Q Consensus 65 vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 144 (381)
.+.+.+..++.+|...|.++++.++||.|.+.+..++++|..-+++.+....... ....+...++..+
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~---~~~~~l~~s~~dl--------- 231 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLL---PLPSLLSKSLSDL--------- 231 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhccc---ccHHHhhCCHHHh---------
Confidence 4999999999999999999999999999977789999999999988876554321 1122222222221
Q ss_pred cccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCcc
Q 016866 145 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPI 224 (381)
Q Consensus 145 ~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~ 224 (381)
+. .....+..+..++++.+|++.|.+++++.+||++. .| ..+|..+..|+........- ..
T Consensus 232 -----~i--g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~~------~~ 292 (381)
T KOG1764|consen 232 -----GI--GTWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGTY------NN 292 (381)
T ss_pred -----Cc--chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCcc------Cc
Confidence 01 12347899999999999999999999999999976 56 67999999999775543221 11
Q ss_pred ccCc-cccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866 225 LQQP-VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 296 (381)
Q Consensus 225 ~~~~-i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~ 296 (381)
+... ++. +.. ....-..+++++.++.++.+++..|..++++++.|||++|.++|++|.+|++..+.
T Consensus 293 ~~~~~l~~-----~~~-~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 293 LDLSCLSE-----ALS-HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLV 359 (381)
T ss_pred cchhHHHH-----Hhh-hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHH
Confidence 1111 111 110 00111235899999999999999999999999999999999999999999999665
No 67
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.47 E-value=1.9e-12 Score=102.78 Aligned_cols=109 Identities=22% Similarity=0.306 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+....+.. .+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~-------------~~ 62 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGE-------------VM 62 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHH-------------hc
Confidence 4668899999999999999999999999986 999999999999986543221 1345665 55
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||.+|+++
T Consensus 63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 567889999999999999999999999999994 689999999999975
No 68
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.46 E-value=7.4e-13 Score=135.60 Aligned_cols=123 Identities=18% Similarity=0.232 Sum_probs=104.0
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 319 (381)
Q Consensus 240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~ 319 (381)
+++++|.+++.++++++++.++.+.|.+++.+.+||+|++|+++|+++.+|+.+....... ..+.++.+
T Consensus 448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~----~~~~~v~d------- 516 (574)
T PRK01862 448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD----TTDKTAAD------- 516 (574)
T ss_pred cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----cccchHHH-------
Confidence 5678899999999999999999999999999999999999999999999999874432111 01234555
Q ss_pred CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC-CeEEEEEehHHHHHHhh
Q 016866 320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGS-KRVEGIISLSDVFRFLL 379 (381)
Q Consensus 320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~-~~liGiIs~~DIl~~l~ 379 (381)
+|.+++.++++++++.++++.|.+++.+++||+|+++ ++++|+||++|+++++.
T Consensus 517 ------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 517 ------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred ------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 6667889999999999999999999999999999532 58999999999999875
No 69
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=1.4e-12 Score=104.57 Aligned_cols=111 Identities=17% Similarity=0.225 Sum_probs=92.2
Q ss_pred ceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccc
Q 016866 159 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 238 (381)
Q Consensus 159 ~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~ 238 (381)
+.++.+++++.+|++.|.+++...+||+|+ +| +++|+++..++.+++...... ...
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~~------~~~------------ 58 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGGP------GCT------------ 58 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccc------------
Confidence 567889999999999999999999999976 56 899999999998855321100 011
Q ss_pred cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 239 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
..+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++.+|+++
T Consensus 59 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 59 APVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred CCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 2334557778999999999999999999999999999998899999999999864
No 70
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=2.5e-12 Score=102.35 Aligned_cols=111 Identities=15% Similarity=0.292 Sum_probs=90.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
.+.++.+++++.++++.|.+++.+.++|.+ +|+++|+++.+|+.+....... .+.+.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~-------------~~ 64 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA---GVLDTTVRA-------------IM 64 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC---chhcCCHHH-------------Hh
Confidence 456789999999999999888888887776 5999999999999875542111 011245665 45
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
..++.++.+++++.++++.|.+++..++||+| + |+++|+||.+|++++
T Consensus 65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~-~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-G-GTLLGVISFHDVAKA 112 (112)
T ss_pred CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-C-CEEEEEEEHHHhhcC
Confidence 55788999999999999999999999999999 3 899999999999863
No 71
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1e-12 Score=104.26 Aligned_cols=103 Identities=21% Similarity=0.307 Sum_probs=87.2
Q ss_pred ecCCCCHHHHHHHHHhCC-----CcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866 252 LRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 326 (381)
Q Consensus 252 v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 326 (381)
+.+++++.++++.|.+++ +..+||+|++|+++|+++.+|+.+.. . +.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~-------~---~~~v~~-------------~ 58 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD-------P---DTPVSD-------------I 58 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC-------C---cchHHH-------------H
Confidence 578899999999998877 47899999889999999999987520 0 245555 4
Q ss_pred CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866 327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 378 (381)
Q Consensus 327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l 378 (381)
|..++.++.+++++.++++.|..++.+.+||+|+ +++++|+||..|+++++
T Consensus 59 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 59 MDTDVISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDVI 109 (109)
T ss_pred hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhhC
Confidence 4457889999999999999999999999999994 68999999999999864
No 72
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1.7e-12 Score=105.33 Aligned_cols=122 Identities=19% Similarity=0.358 Sum_probs=96.4
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 236 (381)
Q Consensus 157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~ 236 (381)
++++++.+++++.++++.|.+++++++||+++ +| +++|+++..++++++....... ....+. ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~~--~~~~~~-------~~~ 66 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRRP--LRGRLR-------GRD 66 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccch--hhhhhh-------ccc
Confidence 46789999999999999999999999999975 46 8999999999988654321100 000000 111
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
....++++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 122455668888999999999999999999999999999998999999999999875
No 73
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.8e-12 Score=104.97 Aligned_cols=115 Identities=14% Similarity=0.194 Sum_probs=92.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhc-cc-----ccccccHHHHHhcCCCCC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA-QI-----HLDEMNIHQALQLGQDAN 321 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~-~~-----~~~~~~v~~~l~~~~~~~ 321 (381)
++.++.+++++.++++.|.+.+++++||+|+ |+++|+++..|+.+........ .. .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ--------- 71 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH---------
Confidence 4678999999999999999999999999996 9999999999998754321100 00 000122333
Q ss_pred CCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 322 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 322 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+|..++.++.+++++.++++.|.+++..++||+|+ +++++|++|+.|++++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~~ 122 (122)
T cd04637 72 ----IMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLKY 122 (122)
T ss_pred ----hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhhC
Confidence 55667899999999999999999999999999994 6899999999999874
No 74
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=3.2e-12 Score=101.89 Aligned_cols=110 Identities=23% Similarity=0.389 Sum_probs=91.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH-HHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA-LAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 326 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~-l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 326 (381)
++.++.+++++.++++.|.+.+.+++||+|+ |+++|+++..|++. ....+.. ....++.+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~----~~~~~~~~-------------~ 63 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRD----PDTTTVGD-------------V 63 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCC----cccCCHHH-------------h
Confidence 4678999999999999999999999999997 99999999999873 3322111 11123554 5
Q ss_pred CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
|...+.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||..|+++
T Consensus 64 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 112 (113)
T cd04622 64 MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR 112 (113)
T ss_pred ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 6667889999999999999999999999999994 689999999999976
No 75
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=1.8e-12 Score=104.62 Aligned_cols=111 Identities=19% Similarity=0.309 Sum_probs=90.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+++...+||+|+ +| +++|+++..++++...... . ...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~-~------~~~----------- 57 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGA-D------LQK----------- 57 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCC-C------ccC-----------
Confidence 5788999999999999999999999999975 56 7999999999988653211 0 001
Q ss_pred ccccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC---CcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~ 293 (381)
..++++|.. ++.++.+++++.+++++|.+++++.+||+|++ |+++|++|.+|+.+
T Consensus 58 -~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 58 -VPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred -CCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 123334653 68899999999999999999999999999976 69999999999865
No 76
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.43 E-value=8.8e-12 Score=123.38 Aligned_cols=206 Identities=12% Similarity=0.135 Sum_probs=140.7
Q ss_pred CeeecccCCCCcEEEEeehHHHHHHHHHhccCC---CCCChhHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCceEeC
Q 016866 87 PMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG 163 (381)
Q Consensus 87 ~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~ 163 (381)
..+|++-+ -..-+|..++...+...+..+ .++. +..+.+...... +...|..+++++.
T Consensus 43 l~~Pi~sa----~Mdtvt~~~MAiaLAr~GGiGvih~nl~--------~~~q~~~l~~VK-------v~~iMi~~pvtv~ 103 (479)
T PRK07807 43 TTIPLVVA----NMTAVAGRRMAETVARRGGLVVLPQDIP--------IDVVAEVVAWVK-------SRDLVFDTPVTLS 103 (479)
T ss_pred cccceeec----CCcchhHHHHHHHHHHCCCceEeeCCCC--------HHHHHHHHhhcc-------cccccccCCeEEC
Confidence 34677754 335567777777666554211 1222 222222222221 1236888999999
Q ss_pred CCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccccccccc
Q 016866 164 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGE 243 (381)
Q Consensus 164 ~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~ 243 (381)
+++++.+|++.|.+++++.+||+|+ ++ +++|++|..|+... . ... .+.+
T Consensus 104 ~d~tv~eA~~~m~~~~~s~l~VVD~---~g---klvGIVT~rDL~~~--------~-----~~~------------~V~d 152 (479)
T PRK07807 104 PDDTVGDALALLPKRAHGAVVVVDE---EG---RPVGVVTEADCAGV--------D-----RFT------------QVRD 152 (479)
T ss_pred CCCCHHHHHHHHHhcCCceEEEECC---CC---eEEEEEeHHHHhcC--------c-----cCC------------CHHH
Confidence 9999999999999999999999975 56 89999999998431 0 011 2445
Q ss_pred ccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCC
Q 016866 244 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPS 323 (381)
Q Consensus 244 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~ 323 (381)
+|..+++++.+++++.+|+++|.++++..+||+|++|+++|+||.+||++........... ....+..
T Consensus 153 iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~~~~-g~l~V~a----------- 220 (479)
T PRK07807 153 VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAVDAA-GRLRVAA----------- 220 (479)
T ss_pred hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchhhhh-hccchHh-----------
Confidence 5888999999999999999999999999999999889999999999999965532110000 0112222
Q ss_pred cccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCe
Q 016866 324 LGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKR 364 (381)
Q Consensus 324 ~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~ 364 (381)
...+ .....+.++.|.+.+++. .++|..+|.
T Consensus 221 -------av~~--~~~~~~~a~~Lv~aGvd~-i~~D~a~~~ 251 (479)
T PRK07807 221 -------AVGI--NGDVAAKARALLEAGVDV-LVVDTAHGH 251 (479)
T ss_pred -------hhcc--ChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence 1112 234667888888899887 577754454
No 77
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.43 E-value=3.4e-12 Score=102.22 Aligned_cols=106 Identities=22% Similarity=0.324 Sum_probs=88.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCc
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 324 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 324 (381)
++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++..|+..... . ..++.+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~-~--------~~~v~~------------ 61 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD-S--------ETPLSE------------ 61 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc-c--------CCCHHH------------
Confidence 4678899999999999999999999999997 799999999999875321 0 134555
Q ss_pred ccCCCcceEEcC--CCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 325 GFNGQRCQMCLR--SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 325 ~~m~~~~~~v~~--~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
+|..++.++.. ++++.++++.|.+++.+++||+| ++|+++|+||..|+++
T Consensus 62 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~-~~~~~~Gvit~~di~~ 113 (114)
T cd04602 62 -VMTPREVLVVAPTGITLEEANEILRESKKGKLPIVN-DDGELVALVTRSDLKK 113 (114)
T ss_pred -hcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC-CCCeEEEEEEHHHhhc
Confidence 45455667755 99999999999999999999999 4689999999999975
No 78
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=5.6e-12 Score=100.36 Aligned_cols=110 Identities=15% Similarity=0.314 Sum_probs=90.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.++.++.++++.|.+.+.+.+||+|+ ++++|+++..|+.+....+.... .+.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~---~~~~~~~-------------~~ 64 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKP---REVPVGE-------------VM 64 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCc---ccCCHHH-------------hc
Confidence 4677899999999999999999999999995 59999999999998543221101 1245555 55
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+||..|+++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 567889999999999999999999999999994 48999999999975
No 79
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.43 E-value=2.2e-12 Score=102.24 Aligned_cols=106 Identities=20% Similarity=0.409 Sum_probs=89.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++.+++..... . +.++.+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~------~---~~~v~~-------------~~ 60 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD------L---DKPVSE-------------VM 60 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc------C---CCCHHH-------------hc
Confidence 5678899999999999999999999999998899999999999864211 0 245555 44
Q ss_pred CCcceEEcC-CCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLR-SDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~-~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+ ++++.++++.|.+.+.+++||+| ++|+++|+||.+|+++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD-DEGKLKGLITVKDIEK 109 (110)
T ss_pred ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc-CCCCEEEEEEhhhhhc
Confidence 445666666 99999999999999999999999 4789999999999985
No 80
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.42 E-value=3.7e-12 Score=100.84 Aligned_cols=109 Identities=19% Similarity=0.366 Sum_probs=88.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.+++++.++++.|.+++++.+||+|+ |+++|+++..|+.+........ . +.++.+ +|
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~-~---~~~~~~-------------~~ 63 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKAK-F---SLPVRE-------------VM 63 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhccccc-c---CcCHHH-------------Hh
Confidence 4678899999999999999999999999997 9999999999999865432111 0 234555 45
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
..++.++++++++.++++.|.+ .. .+||++ ++|+++|+||.+||++|
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~-~~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 64 GEPLPTVDPDAPIEELSELLDR-GN-VAVVVD-EGGKFVGIITRADLLKY 110 (110)
T ss_pred cCCCceeCCCCcHHHHHHHHHh-CC-ceeEEe-cCCeEEEEEeHHHhhcC
Confidence 5578899999999999999988 33 478888 46999999999999875
No 81
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.42 E-value=2.7e-12 Score=125.48 Aligned_cols=118 Identities=12% Similarity=0.244 Sum_probs=101.0
Q ss_pred ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866 240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 316 (381)
Q Consensus 240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~ 316 (381)
+++++|.+ ++.+++.++++.++++.+.+++++++||++++ ++++|+++.+|++.....+ ...+.+
T Consensus 192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~---- 259 (408)
T TIGR03520 192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQS---- 259 (408)
T ss_pred EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHH----
Confidence 56777986 78999999999999999999999999999864 6999999999998643321 123444
Q ss_pred CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866 317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380 (381)
Q Consensus 317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~ 380 (381)
+|. ++.++++++++.++++.|.+++.|..+|+| +.|.++|+||..||+..++|
T Consensus 260 ---------~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 260 ---------LLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred ---------HcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhC
Confidence 332 578999999999999999999999999999 57999999999999999976
No 82
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=4.7e-12 Score=101.34 Aligned_cols=111 Identities=16% Similarity=0.273 Sum_probs=92.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCC-CCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPA-GSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 236 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~-g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~ 236 (381)
+++++.+++++.+|++.|.+++.+.+||+++ + | +++|+++..|+++++...... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~--------- 60 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR---RES---DAYGIVTMRDILKKVVAEGRD------PDRV--------- 60 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC---CCC---cEEEEEehHHHHHHHHhCCCC------CCcc---------
Confidence 5688999999999999999999999999975 4 6 799999999999866432110 0011
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++|..++.++.+++++.++++.|.+.+...+||+|+ |+++|+++..|+++
T Consensus 61 ---~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 61 ---NVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred ---CHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 234457778999999999999999999999999999997 99999999999875
No 83
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=4.4e-12 Score=99.62 Aligned_cols=103 Identities=16% Similarity=0.276 Sum_probs=88.9
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.+++++.++++.|.+++.+.+||+| +|+++|+++..|+.+... +.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~-------------~~ 57 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVAD-------------AM 57 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHH-------------Hc
Confidence 466789999999999999999999999998 699999999999986321 134555 45
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+++..++||+| + |+++|+||..|++.
T Consensus 58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~ 104 (105)
T cd04599 58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL 104 (105)
T ss_pred cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence 55788999999999999999999999999999 4 89999999999873
No 84
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.42 E-value=4.8e-12 Score=102.15 Aligned_cols=114 Identities=20% Similarity=0.337 Sum_probs=92.6
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcc-----cccccccHHHHHhcCCCCCC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ-----IHLDEMNIHQALQLGQDANP 322 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~-----~~~~~~~v~~~l~~~~~~~~ 322 (381)
++.++.+++++.+|.+.|.+.+.+++||+|++|+++|+++..|+.+......... ......++.+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---------- 71 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE---------- 71 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH----------
Confidence 4678899999999999999999999999998899999999999987543211000 0011234444
Q ss_pred CcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 323 SLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 323 ~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
+|..++.++.+++++.++++.|.+.+.+.+||+| + ++++|++|..||++
T Consensus 72 ---~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 72 ---IMTKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLR 120 (121)
T ss_pred ---HhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhc
Confidence 4556788999999999999999999999999999 4 89999999999986
No 85
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=4.2e-12 Score=100.14 Aligned_cols=105 Identities=16% Similarity=0.344 Sum_probs=90.1
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++... . +.++.+ +|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~------~----~~~~~~-------------~~ 58 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD------P----DETVEE-------------IM 58 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC------c----cccHHH-------------hC
Confidence 5678999999999999999888889999996 9999999999997521 0 234555 55
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+|+..|++++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~~ 107 (107)
T cd04610 59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIRS 107 (107)
T ss_pred CCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhcC
Confidence 567889999999999999999999999999994 6899999999999863
No 86
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.41 E-value=4.6e-12 Score=99.76 Aligned_cols=100 Identities=15% Similarity=0.256 Sum_probs=86.4
Q ss_pred eEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccCCC
Q 016866 250 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQ 329 (381)
Q Consensus 250 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m~~ 329 (381)
+++.++.++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+... .++.+ +|..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~-----------~~~~~-------------~~~~ 58 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY-----------GDVVD-------------YIVR 58 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc-----------cchhh-------------hhhc
Confidence 46899999999999999999999999997 99999999999976311 12333 4445
Q ss_pred cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 330 RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 330 ~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|+++
T Consensus 59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~ 103 (104)
T cd04594 59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD 103 (104)
T ss_pred CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence 688999999999999999999999999998 3 89999999999975
No 87
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.41 E-value=1.7e-11 Score=121.24 Aligned_cols=205 Identities=15% Similarity=0.143 Sum_probs=137.7
Q ss_pred eeecccCCCCcEEEEeehHHHHHHHHHhccCC---CCCChhHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCceEeCC
Q 016866 88 MVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 164 (381)
Q Consensus 88 ~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~ 164 (381)
.+|++.+ ..--+|.....-.+...+..+ .++ ++..|.+...... +...|..+++++.+
T Consensus 43 ~~P~vsa----~mdtvTe~~MAi~~A~~GGigvIh~n~--------~i~~qae~v~~VK-------v~eim~~~pvtv~p 103 (475)
T TIGR01303 43 TIPLVVA----NMTAVAGRRMAETVARRGGIVILPQDL--------PIPAVKQTVAFVK-------SRDLVLDTPITLAP 103 (475)
T ss_pred ccceeec----cchhhHHHHHHHHHHHCCCEEEEeCCC--------CHHHHHHHHhhcc-------hhhccccCCeEECC
Confidence 4677754 233456666665555444311 122 4444544443322 11256788999999
Q ss_pred CCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccccccccc
Q 016866 165 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA 244 (381)
Q Consensus 165 ~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~ 244 (381)
++++.+|++.|.+++++.+||+|+ + +++|++|.+|+... . ... .+.++
T Consensus 104 ~~tI~eA~~lm~~~~~~~~vVvD~----g---klvGIVT~rDL~~~------------~-~~~------------~V~dI 151 (475)
T TIGR01303 104 HDTVSDAMALIHKRAHGAAVVILE----D---RPVGLVTDSDLLGV------------D-RFT------------QVRDI 151 (475)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEC----C---EEEEEEEHHHhhcC------------C-CCC------------CHHHH
Confidence 999999999999999999999863 5 79999999998420 0 011 24455
Q ss_pred cCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCc
Q 016866 245 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 324 (381)
Q Consensus 245 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 324 (381)
|..+++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++........... ....+..
T Consensus 152 Mt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~~~~d~~-grl~Vga------------ 218 (475)
T TIGR01303 152 MSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYTPATDAA-GRLRIGA------------ 218 (475)
T ss_pred ccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCCchhhhc-cCceehh------------
Confidence 888999999999999999999999999999999899999999999999865532110000 0111111
Q ss_pred ccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeE
Q 016866 325 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRV 365 (381)
Q Consensus 325 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~l 365 (381)
-+.......+-++.|.+.+++.+ ++|..+|+.
T Consensus 219 --------av~~~~~~~~ra~~Lv~aGVd~i-~~D~a~g~~ 250 (475)
T TIGR01303 219 --------AVGINGDVGGKAKALLDAGVDVL-VIDTAHGHQ 250 (475)
T ss_pred --------eeeeCccHHHHHHHHHHhCCCEE-EEeCCCCCc
Confidence 12233455677777888888764 666545554
No 88
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.41 E-value=4e-12 Score=98.85 Aligned_cols=94 Identities=13% Similarity=0.238 Sum_probs=84.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+++++.+||+|+ +| +++|+++..|+.+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DG---KLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEEHHHHhcCC--------------------------
Confidence 5678999999999999999999999999975 56 799999999997611
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1568899999999999999999999999998899999999999875
No 89
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.41 E-value=1.3e-12 Score=119.60 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=103.3
Q ss_pred ccccccC--CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcC
Q 016866 240 RIGEANG--RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 317 (381)
Q Consensus 240 ~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~ 317 (381)
.|.++|. .+...+.+++++.+..++-.+.+.+++||+|...+++|++|.+|+..... +.++..
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~----------~t~ieK----- 253 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP----------STTIEK----- 253 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC----------CccHHH-----
Confidence 5567777 57788999999999999999999999999999999999999999987322 345555
Q ss_pred CCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866 318 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 378 (381)
Q Consensus 318 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l 378 (381)
+|+++|+++.+.+|+..+.++|.-.++.-+||+| ++.+++|+||++|+++.+
T Consensus 254 --------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~-~n~~llGiitR~dvlk~l 305 (432)
T COG4109 254 --------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVD-SNNTLLGIITRQDVLKSL 305 (432)
T ss_pred --------HhccCCeeecccchHHHHHHHHHhccceeeeEEc-CCceEEEEEEHHHHHHHH
Confidence 8899999999999999999999999999999999 589999999999999986
No 90
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.40 E-value=9.1e-12 Score=98.24 Aligned_cols=112 Identities=22% Similarity=0.437 Sum_probs=92.8
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.++.++.++.+.|.+.+.+.+||+|++++++|+++..|+............ ..+.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~----~~~~~-------------~~ 64 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPL----VTVGD-------------VM 64 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCcc----ccHHH-------------Hh
Confidence 46678999999999999999999999999988999999999999986653221110 11333 44
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
..++.++.+++++.++++.|...+.+.+||+|+ +++++|+++..|++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~~ 113 (113)
T cd02205 65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILRA 113 (113)
T ss_pred cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhcC
Confidence 557889999999999999999999999999994 6999999999999863
No 91
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=5.2e-12 Score=103.06 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=92.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
.++++++++++.+|++.|.++++..+||+|+ .| +++|+++..|++++......... ....+...+. ..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~----~~~~~~~~~~--~~ 69 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLLL----YRTITFKELS--EK 69 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhhc----ccchhhhhhh--hh
Confidence 4678999999999999999999999999976 46 89999999999886532111000 0000000000 00
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.....+.+..++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 70 FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred cccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 01122346678899999999999999999999999999998899999999999875
No 92
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.39 E-value=1.2e-11 Score=99.09 Aligned_cols=111 Identities=24% Similarity=0.427 Sum_probs=94.1
Q ss_pred cCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCc
Q 016866 245 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 324 (381)
Q Consensus 245 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 324 (381)
+.+.+.++.++.++.+|...|.++++..+||++ .++++|++|.+|+.+....+.... .++.+
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~-~~~l~Giit~~di~~~~~~~~~~~-----~~v~~------------ 66 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD-DGKLVGIITERDILRALAAGGKRL-----LPVKE------------ 66 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHhccCCcc-----ccHHH------------
Confidence 446789999999999999999999999999997 458999999999999766433211 13444
Q ss_pred ccCCCcceEEcCCCCHHHHHHHHHh-CCCCEEEEEeCCCC-eEEEEEehHHHH
Q 016866 325 GFNGQRCQMCLRSDPLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIISLSDVF 375 (381)
Q Consensus 325 ~~m~~~~~~v~~~~tl~~~~~~m~~-~~~~~l~Vvd~~~~-~liGiIs~~DIl 375 (381)
+|..++.++.+++++.++++.|.. ++++++||+|+ ++ +++|++|.+|++
T Consensus 67 -v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di~ 117 (117)
T COG0517 67 -VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDIL 117 (117)
T ss_pred -hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHcC
Confidence 676789999999999999999999 79999999994 55 999999999974
No 93
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.39 E-value=8.7e-12 Score=98.19 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=88.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+++.+.+||+++ +| +++|+++..|+++... .+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~---~g---~~~Giv~~~dl~~~~~--------------~~--------- 52 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA---DG---QPLGFVTRREAARASG--------------GC--------- 52 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEeHHHHHHhcc--------------cc---------
Confidence 4678899999999999999999999999975 57 8999999999987311 11
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
++++|.+.+..+.+++++.++++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus 53 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 53 ---CGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred ---hhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 22336667788999999999999999999999999998899999999999875
No 94
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=6.6e-12 Score=99.75 Aligned_cols=109 Identities=20% Similarity=0.422 Sum_probs=91.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
++.++.+++++.+|++.|.+.+...+||+++ +| +++|+++..++.+++.... ...+
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~---------~~~~--------- 57 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGG---------PDAP--------- 57 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcC---------CCCc---------
Confidence 4678899999999999998889999999975 56 8999999999998664321 0112
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|++|.+|+..
T Consensus 58 ---v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 58 ---VRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred ---HHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 23446678889999999999999999999999999998899999999999864
No 95
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=1e-11 Score=98.77 Aligned_cols=111 Identities=20% Similarity=0.364 Sum_probs=92.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++.+.+++++.+|++.|.+++++.+||+++ ++ +++|+++..++++++....... ..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~~------~~----------- 58 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGASA------LD----------- 58 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCCc------cc-----------
Confidence 5678899999999999999999999999975 46 7999999999998664321100 01
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
..+.++|..++.++.++.++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus 59 -~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 59 -TPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred -cCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 1244557778899999999999999999999999999986 99999999999875
No 96
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=1.1e-11 Score=98.40 Aligned_cols=108 Identities=21% Similarity=0.430 Sum_probs=91.7
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 236 (381)
Q Consensus 157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~ 236 (381)
++++++.+++++.+|++.|.+++...+||+++ +| +++|+++..++++.+.... .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~~-------- 56 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------KS-------- 56 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------cC--------
Confidence 46788999999999999999999999999975 57 8999999999987543210 11
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
+.++|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|+.+
T Consensus 57 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 57 ----VEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred ----HHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 23346668889999999999999999999999999998899999999999865
No 97
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=9.7e-12 Score=99.26 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=90.7
Q ss_pred ceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccc
Q 016866 159 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 238 (381)
Q Consensus 159 ~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~ 238 (381)
.+++.+++++.+|++.|.+++.+.+||+++ +| +++|+++..|+++.+..... ...
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~----------- 58 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDD----------- 58 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCC-----------
Confidence 467899999999999999999999999975 56 89999999999875532110 011
Q ss_pred cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 239 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus 59 -~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 59 -PVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred -CHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 233447778889999999999999999999999999998899999999999863
No 98
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.38 E-value=3.6e-12 Score=126.87 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=92.7
Q ss_pred ceEecCCCCHHHHHHHHHhCCCcEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcc
Q 016866 249 FAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLG 325 (381)
Q Consensus 249 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~ 325 (381)
++++.+++++.+|+++|.+++++.+||+|+ +|+++|++|..|+.... . ..+.++.+
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~------~~~~~V~d------------- 165 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--M------SLDTKVKD------------- 165 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--c------CCCCCHHH-------------
Confidence 458999999999999999999999999996 58999999999996421 0 11456777
Q ss_pred cCCC--cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 326 FNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 326 ~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+|+. +++++.+++++.+|++.|.+++++++|||| ++++++|+||..|+++.
T Consensus 166 IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 166 FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSH 218 (502)
T ss_pred HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhc
Confidence 5654 688999999999999999999999999999 47899999999999885
No 99
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.38 E-value=4.5e-12 Score=117.56 Aligned_cols=113 Identities=17% Similarity=0.291 Sum_probs=96.8
Q ss_pred cccccccCCC-ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcC
Q 016866 239 PRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 317 (381)
Q Consensus 239 ~~v~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~ 317 (381)
.+++++|.++ +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....+.. .+.++.+
T Consensus 155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~-----~~~~v~~----- 224 (268)
T TIGR00393 155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGS-----LKSEVRD----- 224 (268)
T ss_pred hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCc-----ccCcHHH-----
Confidence 3677888888 9999999999999999999999999999989999999999999885432111 1345666
Q ss_pred CCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEe
Q 016866 318 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIIS 370 (381)
Q Consensus 318 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs 370 (381)
+|..++.++.+++++.+|++.|.+.+.+++||+|+ +|+++|+|+
T Consensus 225 --------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~GvI~ 268 (268)
T TIGR00393 225 --------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD-HNKVLGVLH 268 (268)
T ss_pred --------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC-CCeEEEEEC
Confidence 66678899999999999999999999999999994 689999985
No 100
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.38 E-value=5.5e-12 Score=124.70 Aligned_cols=113 Identities=13% Similarity=0.172 Sum_probs=97.4
Q ss_pred ccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCC
Q 016866 242 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN 321 (381)
Q Consensus 242 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~ 321 (381)
.+.|.++++++.+++++.+++++|.+++++.+||+| +++++|++|.+|+.... . ..++.+
T Consensus 91 ~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~-------~---~~~V~d--------- 150 (475)
T TIGR01303 91 RDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVD-------R---FTQVRD--------- 150 (475)
T ss_pred hhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCC-------C---CCCHHH---------
Confidence 344777889999999999999999999999999998 57999999999984321 0 235666
Q ss_pred CCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866 322 PSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379 (381)
Q Consensus 322 ~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~ 379 (381)
+|..+++++.+++++.+|++.|.+++++++||||+ +++++|+||.+||+++..
T Consensus 151 ----IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~~ 203 (475)
T TIGR01303 151 ----IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRATI 203 (475)
T ss_pred ----HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHh
Confidence 67778999999999999999999999999999994 689999999999998653
No 101
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=7.9e-12 Score=100.04 Aligned_cols=114 Identities=18% Similarity=0.289 Sum_probs=90.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+++++.+||+|+ +| +++|+++..++++++....... .. .+ +
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~-----~~-----~~----~ 61 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EG---KYVGTISLTDILWKLKGLENLD-----LE-----RL----V 61 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CC---cEEEEEeHHHHHHHhhccCchh-----HH-----HH----h
Confidence 4678999999999999999999999999975 56 7999999999998774322110 00 00 0
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
...+.++|.+++.++.+++++.++++.|.+.+ .+||+|++|+++|++|.+|+++
T Consensus 62 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 62 DLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred CCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 12344557778999999999999999998765 5999998899999999999875
No 102
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.4e-11 Score=98.04 Aligned_cols=110 Identities=19% Similarity=0.361 Sum_probs=92.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
++.++.+++++.+|++.|.+.+.+.+||+++ +| +++|+++..++++++..... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~---------- 57 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDT---------- 57 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------Ccc----------
Confidence 4678899999999999999999999999976 46 89999999999886643211 111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++|..++.++.+++++.++++.|.+++...+||++++|+++|+++.+|+++
T Consensus 58 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 58 --PVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred --CHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 233447778899999999999999999999999999998899999999999864
No 103
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=1.6e-11 Score=102.76 Aligned_cols=126 Identities=19% Similarity=0.301 Sum_probs=92.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhh-ccc------ccccccHHHHHhc----
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY-AQI------HLDEMNIHQALQL---- 316 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~-~~~------~~~~~~v~~~l~~---- 316 (381)
+++++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+.+..... ... .....++.++++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 5678999999999999999999999999997 999999999999886543221 000 0000111111000
Q ss_pred ---CCCCCCCcc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 317 ---GQDANPSLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 317 ---~~~~~~~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
......+.. +|..++.++.+++++.+++..|.+.+.+++||++ + ++++|+||..|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence 000011121 5667899999999999999999999999999999 4 89999999999974
No 104
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.37 E-value=3e-12 Score=104.48 Aligned_cols=113 Identities=15% Similarity=0.225 Sum_probs=92.0
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 236 (381)
Q Consensus 157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~ 236 (381)
.+++++.+++++.+|++.|.+++++.+||+|+ +| +++|+++..++++.+...... ..
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~---------- 58 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PS---------- 58 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CC----------
Confidence 36788999999999999999999999999976 46 799999999998765432110 11
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHH---------hCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866 237 WVPRIGEANGRPFAMLRPTASLGSALALLV---------QADVSSIPIVDDNDSLLDIYSRSDITAL 294 (381)
Q Consensus 237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~---------~~~~~~lpVvd~~g~lvGiis~~Di~~l 294 (381)
..++++|.+++.++.+++++.++.+++. +.+...+||+|++|+++|++|.+|++++
T Consensus 59 --~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 59 --DPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred --CcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 2355669999999999999999999653 3367888999988999999999999874
No 105
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.37 E-value=7.7e-12 Score=123.84 Aligned_cols=112 Identities=17% Similarity=0.323 Sum_probs=97.5
Q ss_pred ccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC---CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCC
Q 016866 244 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 320 (381)
Q Consensus 244 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~ 320 (381)
.|.+++.++.+++++.+++++|.+++++++||+|++ ++++|+++.+|+..... .+.++.+
T Consensus 85 ~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~d-------- 147 (450)
T TIGR01302 85 GIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSE-------- 147 (450)
T ss_pred ceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHH--------
Confidence 356688999999999999999999999999999987 79999999999975321 0245666
Q ss_pred CCCcccCC-CcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866 321 NPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 378 (381)
Q Consensus 321 ~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l 378 (381)
+|. .++.++++++++.++++.|.+++.+.+||+| ++|+++|+||..||++.+
T Consensus 148 -----vm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 148 -----VMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR 200 (450)
T ss_pred -----hhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence 555 3789999999999999999999999999999 479999999999999875
No 106
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.36 E-value=8.1e-12 Score=99.88 Aligned_cols=109 Identities=15% Similarity=0.242 Sum_probs=87.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCC-cceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 236 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~-i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~ 236 (381)
++.++.+++++.+|++.|.+++ .+.+||+|+ +| +++|+++..|+++...... ...++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~v------- 59 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTTV------- 59 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccch-------
Confidence 5678899999999999987775 889999975 56 7999999999988553210 01122
Q ss_pred cccccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 237 WVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 237 ~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.++|.. ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus 60 -----~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 60 -----IQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred -----hhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 233442 3568999999999999999999999999998899999999999864
No 107
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.36 E-value=9.6e-12 Score=124.02 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=96.6
Q ss_pred cCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCC
Q 016866 245 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDAN 321 (381)
Q Consensus 245 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~ 321 (381)
|.++++++.+++++.+++++|.+++++.+||+|+ +|+++|++|.+|+..... .+.++.+
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~---------~~~~V~e--------- 167 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVND---------RETKLSE--------- 167 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccc---------cCCcHHH---------
Confidence 5568899999999999999999999999999997 489999999999965321 1356777
Q ss_pred CCcccCCCc--ceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866 322 PSLGFNGQR--CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 378 (381)
Q Consensus 322 ~~~~~m~~~--~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l 378 (381)
+|..+ +.++.+++++.+|++.|.+++++++||||+ +++++|+||.+||++++
T Consensus 168 ----IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 168 ----VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVK 221 (505)
T ss_pred ----HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHh
Confidence 55544 789999999999999999999999999994 68999999999999886
No 108
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.36 E-value=6.6e-12 Score=124.52 Aligned_cols=117 Identities=14% Similarity=0.239 Sum_probs=100.5
Q ss_pred cccccccCCCceEecCCCCHHHHHHHHHh-----CCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHH
Q 016866 239 PRIGEANGRPFAMLRPTASLGSALALLVQ-----ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQA 313 (381)
Q Consensus 239 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~ 313 (381)
.+++++|.+++.+++++.++.++++.|.+ ++...++|+|++++++|+++.+|++... .+.++++
T Consensus 131 ~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~----------~~~~v~~- 199 (449)
T TIGR00400 131 DSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK----------PEEILSS- 199 (449)
T ss_pred chHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC----------CCCcHHH-
Confidence 35677799999999999999999999975 4567899999899999999999987521 0245666
Q ss_pred HhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 016866 314 LQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLL 379 (381)
Q Consensus 314 l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~ 379 (381)
+|.++++++++++++.+|++.|.+++...+|||| ++|+++|+||..|+++.+.
T Consensus 200 ------------im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 200 ------------IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred ------------HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHH
Confidence 5666788999999999999999999999999999 4799999999999998874
No 109
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.3e-11 Score=99.78 Aligned_cols=120 Identities=20% Similarity=0.370 Sum_probs=94.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+.+++.+||+++ +| +++|+++..++++++........ ....... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~~~-------~ 65 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNG---EESLTKE-------R 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhcccccccc---ccccccc-------c
Confidence 5678999999999999999999999999975 46 89999999999987653321100 0000000 1
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
...+.+++..++..+.+++++.++++.|.+.+.+.+||+|++|+++|++|..|++.
T Consensus 66 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 66 DVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 11344557778999999999999999999999999999998899999999999875
No 110
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.36 E-value=9.5e-12 Score=124.44 Aligned_cols=115 Identities=21% Similarity=0.368 Sum_probs=99.8
Q ss_pred cccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCC
Q 016866 241 IGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 320 (381)
Q Consensus 241 v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~ 320 (381)
+++.|..++.++.+++++.+++++|.+++++++||+|++++++|+++.+|+..... . ..++.+
T Consensus 89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~------~---~~~V~d-------- 151 (486)
T PRK05567 89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD------L---SQPVSE-------- 151 (486)
T ss_pred hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc------C---CCcHHH--------
Confidence 34557789999999999999999999999999999999999999999999964211 0 245665
Q ss_pred CCCcccCC-CcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866 321 NPSLGFNG-QRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 378 (381)
Q Consensus 321 ~~~~~~m~-~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l 378 (381)
+|. .+++++.+++++.++++.|.+++++.+||+| ++|+++|+||..||++.+
T Consensus 152 -----im~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD-e~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 152 -----VMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD-DNGRLKGLITVKDIEKAE 204 (486)
T ss_pred -----HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHhhhhh
Confidence 555 5789999999999999999999999999999 479999999999999875
No 111
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.2e-11 Score=100.48 Aligned_cols=123 Identities=21% Similarity=0.343 Sum_probs=94.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|+++|.+.+.+.+||+++ .+| +++|+++..++++++......... ..... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~----~~~~~----~~~~ 68 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKI----KTGNG----LEAI 68 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccc----ccccc----chhh
Confidence 5678899999999999999999999999975 237 899999999999877532211000 00000 0001
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
...+.+++..++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 12344557778999999999999999999999999999998799999999999875
No 112
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.35 E-value=1.9e-11 Score=97.90 Aligned_cols=111 Identities=18% Similarity=0.367 Sum_probs=91.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
++..+.+++++.+|++.|.+.+.+.+||+|+ .| +++|+++..|+++.+...... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~---------- 58 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPS---------- 58 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccc----------
Confidence 4567889999999999999999999999975 56 899999999998865421100 001
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC--CcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiis~~Di~~ 293 (381)
.+.++|..++.++.+++++.+++++|.+++...+||+|++ |+++|++|.+|+++
T Consensus 59 --~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 59 --AVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred --cHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 1334467788999999999999999999999999999977 89999999999875
No 113
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=1.5e-11 Score=97.44 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=89.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
++.++.+++++.+|++.|.+++.+.+||+|+ +| +++|+++..+++... ...+
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-------------~~~~--------- 54 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE---KN---KVVGIVTSKDVAGKD-------------PDTT--------- 54 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECC---CC---eEEEEecHHHHhccc-------------cccc---------
Confidence 5788999999999999999999999999975 57 899999999997521 0112
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
+.++|..++.++.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 55 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 55 ---IEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred ---HHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 33446677889999999999999999999999999998999999999999875
No 114
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.35 E-value=6.9e-12 Score=119.42 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=98.6
Q ss_pred CCCCCC--ceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccc
Q 016866 153 RPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS 230 (381)
Q Consensus 153 ~~~~~~--~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~ 230 (381)
.+|.++ ++++++++++.+|++.|.+++...+||+|+ +| +++|+++..|+.+++.... ..
T Consensus 201 ~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~---~g---~~iG~vt~~dl~~~~~~~~--------~~----- 261 (321)
T PRK11543 201 HLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA---QQ---QVQGVFTDGDLRRWLVGGG--------AL----- 261 (321)
T ss_pred HHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEecHHHHHHHHhCCC--------Cc-----
Confidence 367777 999999999999999999999999999976 57 8999999999987553210 01
Q ss_pred cccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866 231 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 294 (381)
Q Consensus 231 ~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l 294 (381)
...+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|++|++|++++
T Consensus 262 -------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 -------TTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred -------CCcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 123456688899999999999999999999999999999988999999999999863
No 115
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=2.5e-11 Score=97.71 Aligned_cols=113 Identities=17% Similarity=0.240 Sum_probs=89.1
Q ss_pred CceEecCCCCHHHHHHHHHhCC-CcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866 248 PFAMLRPTASLGSALALLVQAD-VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 326 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 326 (381)
++.++.+++++.++++.|.+.+ .+.+||+|+ |+++|+++..|+..+........ ...+.++.+ +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~-~~~~~~v~~-------------~ 66 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRA-LYGKKPVSE-------------V 66 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHH-HHcCCcHHH-------------h
Confidence 4567899999999999998877 899999998 99999999999987544211000 001234555 6
Q ss_pred CCCcceEEcCCCCHHHHHHHHHhCCCCE---EEEEeCCCCeEEEEEehHHHHH
Q 016866 327 NGQRCQMCLRSDPLHKVMERLANPGVRR---LVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~---l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
|..++.++.+++++.++++.|.+.+..+ .+||++ +|+++|+||..|+++
T Consensus 67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 6678899999999999999999998643 468884 699999999999975
No 116
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.34 E-value=2.3e-11 Score=96.96 Aligned_cols=111 Identities=19% Similarity=0.349 Sum_probs=92.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
++.++.+++++.++++.|.+.+.+.+||+++ +| +++|+++..++.+++...... ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~----------- 58 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LT----------- 58 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------cc-----------
Confidence 4667899999999999998888999999976 46 899999999999876532211 00
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
..++++|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 59 -~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 -LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred -CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 1244557778889999999999999999999999999998899999999999875
No 117
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.34 E-value=2.2e-11 Score=96.30 Aligned_cols=100 Identities=22% Similarity=0.344 Sum_probs=87.0
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCc
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 324 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 324 (381)
....+.+++++.++.+.|.+.+...+||+|+ +|+++|+++..|+.+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~--------------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN--------------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence 4567899999999999999998999999997 6999999999999875431
Q ss_pred ccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 325 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 325 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+|..++.++.+++++.++++.|.+++.+++||++ +|+++|+||..|++++
T Consensus 56 -~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 56 -YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA 105 (105)
T ss_pred -hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence 1223578999999999999999999999999997 4899999999999864
No 118
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.34 E-value=2.3e-11 Score=96.10 Aligned_cols=106 Identities=20% Similarity=0.336 Sum_probs=89.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
++..+.+++++.+|++.|.+++...+||+++ +| +++|+++..|+++.... ..+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~------------~~~--------- 55 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKE------------AKS--------- 55 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhc------------CCc---------
Confidence 5678899999999999999999999999976 46 79999999999874321 012
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
+.++|...+.++.+++++.++++.|.+.+.+.+||++++|+++|++|.+|+++
T Consensus 56 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 56 ---LEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred ---HhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 22346667889999999999999999999999999998899999999999864
No 119
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=2.5e-11 Score=96.77 Aligned_cols=111 Identities=14% Similarity=0.242 Sum_probs=90.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+...+.+++++.+|++.|.+.+.+.+||+|+ +| +++|+++..++.+...... .....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~-------~~~~~---------- 58 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESE-------ELKDA---------- 58 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhh-------hhcCC----------
Confidence 3567899999999999999999999999976 46 7999999999987432210 00111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus 59 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 59 --KVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred --cHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 233447778899999999999999999999999999998899999999999864
No 120
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.34 E-value=2.6e-11 Score=97.73 Aligned_cols=120 Identities=19% Similarity=0.288 Sum_probs=94.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
++.++++++++.+|++.|.+.+...+||+++ | +++|+++..+++++......... ..+...+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~ 65 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR----G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC----C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence 4678899999999999999999999999964 5 79999999999986643221110 000000011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
...+.++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 12345667788999999999999999999999999999998899999999999875
No 121
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=1.3e-11 Score=98.53 Aligned_cols=112 Identities=23% Similarity=0.300 Sum_probs=91.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+++.+.+||+++ ++ +++|+++..++++.+....... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~----------- 59 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NG---NLVGFLSEQDCLKQLLESSYHC-----DGV----------- 59 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CC---eEEEEeehHHHHHHhhhhhhcc-----CCC-----------
Confidence 4678899999999999999999999999975 56 7999999999998664321000 001
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
..+.++|..++.++.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus 60 -~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 60 -ATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred -ccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 1234557778889999999999999999999999999996 99999999999875
No 122
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.33 E-value=9.7e-12 Score=118.66 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=97.0
Q ss_pred CCCCCC--CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcc
Q 016866 152 GRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV 229 (381)
Q Consensus 152 g~~~~~--~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i 229 (381)
+.+|.+ +++++.+++++.+|++.|.+++.+.+||+|+ +| +++|++|..|+.+.+....
T Consensus 205 ~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~---~g---~lvGivt~~Dl~~~~~~~~-------------- 264 (326)
T PRK10892 205 SDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD---NM---KIEGIFTDGDLRRVFDMGI-------------- 264 (326)
T ss_pred HHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC---CC---cEEEEEecHHHHHHHhcCC--------------
Confidence 346776 8999999999999999999999888888875 57 8999999999987432110
Q ss_pred cccccccc-ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866 230 SSIQLGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 294 (381)
Q Consensus 230 ~~l~ig~~-~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l 294 (381)
.| ...++++|.+++.++.+++++.+|++.|.+++++.+||++ +|+++|++|++|+++.
T Consensus 265 ------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 265 ------DLRQASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ------CcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 11 1235566999999999999999999999999999999997 6899999999999873
No 123
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.33 E-value=2.5e-11 Score=96.38 Aligned_cols=109 Identities=16% Similarity=0.242 Sum_probs=89.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+++...+||++++ +| +++|+++..+++++...... ..++.
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~--~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~------- 60 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGD--LD---NIIGVVHVKDLLRALAEGEE---------DLDLR------- 60 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC--Cc---eEEEEEEHHHHHHHHHcCCC---------cCCHH-------
Confidence 46789999999999999999999999999761 26 89999999999986642110 01111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
+.+ .++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|++.
T Consensus 61 -----~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 61 -----DLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred -----HHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 223 35788999999999999999999999999998899999999999864
No 124
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=4e-11 Score=94.51 Aligned_cols=104 Identities=19% Similarity=0.366 Sum_probs=88.2
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFN 327 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m 327 (381)
++.++.++.++.+++..|.+.+.+.+||++++|+++|+++..++..... +.++.+ +|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~-------------~~ 58 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLAL-------------LM 58 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHH-------------Hh
Confidence 4567889999999999999999999999998899999999999975211 123333 44
Q ss_pred CCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 328 GQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 328 ~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..++.++.+++++.++++.|.+++.+.+||+| + |+++|+||..|+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~G~it~~d~~~ 105 (106)
T cd04638 59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-D-GKLVGIVTVADIVR 105 (106)
T ss_pred cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence 45788999999999999999999999999999 3 79999999999975
No 125
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=2.4e-11 Score=96.55 Aligned_cols=109 Identities=15% Similarity=0.277 Sum_probs=90.3
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
++..+.+++++.+|++.|.+++.+.+||+++ +| +++|+++..|+..+..... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~---------- 57 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEK---------- 57 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccC----------
Confidence 5678899999999999999999999999975 56 7999999999987542110 0111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++|.+++.++.+++++.++++.|.+++...+||+|+ |+++|++|..|++.
T Consensus 58 --~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 58 --KVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred --cHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 233447778899999999999999999999999999997 99999999999864
No 126
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=3e-11 Score=96.65 Aligned_cols=110 Identities=19% Similarity=0.328 Sum_probs=87.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCC-cceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 236 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~-i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~ 236 (381)
+.+.+.+++++.+|++.|.+++ ...+||.++ | +++|+++..|+++++..... ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~-------~~~~--------- 58 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK----G---RLLGIFTERDIVRLTAIGKD-------LSDL--------- 58 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC----C---cEEEEEeHHHHHHHHhcCCC-------cccc---------
Confidence 4567899999999999998888 566777742 6 79999999999986542110 0011
Q ss_pred cccccccccCCCceEecCC--CCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 237 WVPRIGEANGRPFAMLRPT--ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 237 ~~~~v~~~~~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++|..++.++.++ +++.++++.|.+++...+||+|++|+++|++|++|+++
T Consensus 59 ---~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 59 ---PIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred ---CHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 2334477778888887 78999999999999999999998899999999999875
No 127
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2.2e-11 Score=100.17 Aligned_cols=127 Identities=19% Similarity=0.314 Sum_probs=94.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCC---CCccccCccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPILQQPVSSIQL 234 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~---~~~~~~~~i~~l~i 234 (381)
+++++.+++++.+|++.|.+++++++||+|+ ++ +++|+++..++++++......... ....... .....
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 73 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLD--ESKIK 73 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccc--hHHHH
Confidence 5678999999999999999999999999975 56 799999999999877532211000 0000000 00000
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 235 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 235 g~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
......+.++|.+++..+.+++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 74 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 74 KLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 00011345667778899999999999999999999999999997 99999999999875
No 128
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=1.3e-11 Score=102.08 Aligned_cols=130 Identities=18% Similarity=0.325 Sum_probs=94.9
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc--c-
Q 016866 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI--Q- 233 (381)
Q Consensus 157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l--~- 233 (381)
+++.++.+++++.+|++.|.+++.+++||+|+ ++ +++|+++..++.++....+................. .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~---~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD---DG---RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAF 75 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC---CC---CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHH
Confidence 46788999999999999999999999999975 56 799999999998865432210000000000000000 0
Q ss_pred ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.......+.++|.+++.++.+++++.++++.|.+.+.+.+||+| +|+++|++|..|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 76 VRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 00011235566778899999999999999999999999999999 899999999999875
No 129
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.32 E-value=3.1e-11 Score=95.87 Aligned_cols=109 Identities=20% Similarity=0.370 Sum_probs=90.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
++.++.++.++.+|++.|.+++.+.+||+++ + +++|+++..++.+.+..... ....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~-------~~~~---------- 57 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD----G---RLVGIVTDRDLRNRVVAEGL-------DPDT---------- 57 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHhccCC-------CccC----------
Confidence 5678899999999999999999999999964 5 79999999999875432100 0011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++|..++.++.+++++.++++.|.+++.+.+||+++ |+++|+++.+|+++
T Consensus 58 --~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 58 --PVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred --CHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 233447778899999999999999999999999999986 99999999999975
No 130
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.32 E-value=4.8e-11 Score=94.59 Aligned_cols=109 Identities=24% Similarity=0.421 Sum_probs=91.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
++..+.+++++.+|++.|.+++.+.+||+++ + +++|+++..++.++...... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~~l~~~~~~~~~--------~~----------- 55 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD----G---RPLGIVTERDILRLLASGPD--------LQ----------- 55 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEeHHHHHHHHhcCCC--------CC-----------
Confidence 4678999999999999999989999999964 6 89999999999886642110 11
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
..++++|..++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus 56 -~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 56 -TPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred -cCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 1234457778899999999999999999999999999998899999999999874
No 131
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=3.2e-11 Score=99.88 Aligned_cols=129 Identities=16% Similarity=0.228 Sum_probs=94.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccC-CCCCccc---cCcccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-SSSLPIL---QQPVSSIQ 233 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~-~~~~~~~---~~~i~~l~ 233 (381)
+++++.+++++.+|++.|.+++.+.+||+|+ +| +++|+++..++++++....... +.....+ ..+-....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD---NG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY 75 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECC---CC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence 4577899999999999999999999999976 57 8999999999998764221110 0000000 00000000
Q ss_pred ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.......+.++|.+++..+.+++++.++++.|.+++.+.+||+++ |+++|+++.+|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 011122466778888999999999999999999999999999986 99999999999875
No 132
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.31 E-value=5.3e-11 Score=94.31 Aligned_cols=108 Identities=22% Similarity=0.423 Sum_probs=90.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+++++.+||+++ + +++|+++..+++++...... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~~l~~~~~~~~~---------~~---------- 55 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD----G---KLVGIVTLSDIAHAIARGLE---------LA---------- 55 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhcccc---------cc----------
Confidence 5678999999999999999999999999963 5 79999999999985432110 01
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++|..++.++.+++++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus 56 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 56 --KVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred --CHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 223346678899999999999999999999999999998899999999999874
No 133
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.31 E-value=8e-11 Score=110.04 Aligned_cols=164 Identities=14% Similarity=0.201 Sum_probs=121.9
Q ss_pred hhhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhh
Q 016866 50 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET 129 (381)
Q Consensus 50 l~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~ 129 (381)
|...++.++|-+-.++++++.+.|+.++++.+.+++.+.+||++.+.++++|+++..|++..+.. .....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~~------- 133 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEAF------- 133 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCcC-------
Confidence 44679999997767899999999999999999999999999998765679999999999864421 00000
Q ss_pred ccHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHH
Q 016866 130 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK 209 (381)
Q Consensus 130 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~ 209 (381)
.+. + +|. +.+++.+++++.++++.|.+++.+.+||+|+ .| .++|++|..||+.
T Consensus 134 -~l~---~----------------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe---~G---~viGiVTleDIle 186 (292)
T PRK15094 134 -SMD---K----------------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FG---GVSGLVTIEDILE 186 (292)
T ss_pred -CHH---H----------------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC---CC---CEEEEeEHHHHHH
Confidence 111 1 233 4558999999999999999999999999976 56 7999999999999
Q ss_pred HHhhhcccCCCCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHH
Q 016866 210 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 265 (381)
Q Consensus 210 ~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m 265 (381)
.+.......... .....+..++-| -+.+....++.+..+.+
T Consensus 187 ~ivGei~de~d~--~~~~~i~~~~~~-------------~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 187 LIVGEIEDEYDE--EDDIDFRQLSRH-------------TWTVRALASIEDFNEAF 227 (292)
T ss_pred HHhCCCcccccc--ccccccEEeCCC-------------eEEEEeccCHHHHHHHh
Confidence 988654332110 001123333222 34678888888887776
No 134
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.31 E-value=5.8e-11 Score=95.08 Aligned_cols=112 Identities=26% Similarity=0.472 Sum_probs=95.4
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866 154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 233 (381)
Q Consensus 154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ 233 (381)
.|.+.++++.++.++.+|+..|.++++..+||++. + +++|++|.+|+++++........
T Consensus 4 ~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~~-------------- 62 (117)
T COG0517 4 IMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRLL-------------- 62 (117)
T ss_pred cccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCccc--------------
Confidence 34578899999999999999999999999999965 2 59999999999997764432210
Q ss_pred ccccccccccccCCCceEecCCCCHHHHHHHHHh-CCCcEEEEEcCCC-cEEEEEeHHHHH
Q 016866 234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ-ADVSSIPIVDDND-SLLDIYSRSDIT 292 (381)
Q Consensus 234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~g-~lvGiis~~Di~ 292 (381)
.+.++|..++.++.++.++.++.+.|.+ ++++++||+++++ +++|++|.+|++
T Consensus 63 ------~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 ------PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred ------cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 2445577789999999999999999999 7999999999886 999999999973
No 135
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.30 E-value=5.2e-11 Score=94.79 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=90.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++.+.+++++.++++.|.+++.+.+||+++ | +++|+++..+++..+...... ....+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~~--------- 59 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG----N---KLVGIFTSKDIALRVVAQGLD------PESTL--------- 59 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC----C---EEEEEEEhHHHHHHHHhcCCC------cCcCC---------
Confidence 5678899999999999999999999999963 5 799999999998644321100 00112
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
+.++|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|++.
T Consensus 60 ---v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 60 ---VERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred ---HHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 33447778889999999999999999999999999998899999999999864
No 136
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=3.2e-11 Score=97.33 Aligned_cols=119 Identities=19% Similarity=0.426 Sum_probs=92.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+++.+.+||+++ | +++|+++..++.+++........ ......+...
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~----~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~~~~~~~------ 66 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG----G---KLVGIVTEKDIADALRSFRPLVR--DRHQERRIRN------ 66 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC----C---EEEEEEchHHHHHhhhhhhhccc--chhhhhhhhc------
Confidence 5778999999999999999999999999963 6 89999999999986653221100 0000111111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
..+.++|..++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus 67 -~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 67 -LPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred -cCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 1344557778999999999999999999999999999997 99999999999875
No 137
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.30 E-value=3.9e-11 Score=119.74 Aligned_cols=118 Identities=14% Similarity=0.240 Sum_probs=97.3
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 319 (381)
Q Consensus 240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~ 319 (381)
+++++|.+++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+.+......... +.++.+
T Consensus 336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~----~~~v~~------- 404 (454)
T TIGR01137 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKANP----DDAVSK------- 404 (454)
T ss_pred CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCCCc----CCCHHH-------
Confidence 567889999999999999999999999999999999998899999999999988544221100 235666
Q ss_pred CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866 320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 378 (381)
Q Consensus 320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l 378 (381)
+|..++.++++++++.++++.|.+++ .+||++ +++++|+||.+||+++|
T Consensus 405 ------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 405 ------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred ------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence 56667889999999999999998864 355553 58999999999999986
No 138
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.29 E-value=9.3e-11 Score=114.73 Aligned_cols=161 Identities=16% Similarity=0.183 Sum_probs=122.4
Q ss_pred hhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhc
Q 016866 51 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 130 (381)
Q Consensus 51 ~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~ 130 (381)
++.++.|+|-+-.++++++.+.|+.++++.+.+++.+.+||++++..+++|+++.+|++..+. . ...
T Consensus 189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~~-------- 255 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KNF-------- 255 (408)
T ss_pred CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CCC--------
Confidence 368899999887899999999999999999999999999999977678999999999975331 1 000
Q ss_pred cHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHH
Q 016866 131 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 210 (381)
Q Consensus 131 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~ 210 (381)
.+. + .+ +++..|++++++.++++.|.+++.|.++|+|+ .| ...|++|..||+..
T Consensus 256 ~l~---~----------------~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE---~G---~~~GiVT~eDilee 309 (408)
T TIGR03520 256 DWQ---S----------------LL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE---YG---GTSGLVTLEDIIEE 309 (408)
T ss_pred CHH---H----------------Hc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC---CC---CEEEEEEHHHHHHH
Confidence 111 1 22 46789999999999999999999999999976 56 79999999999998
Q ss_pred HhhhcccCCCCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHH
Q 016866 211 ICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLV 266 (381)
Q Consensus 211 l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~ 266 (381)
+......... .....+..++ .....++...++.++.+.|.
T Consensus 310 ivgei~de~d---~~~~~i~~~~-------------~~~~~v~G~~~l~~l~~~l~ 349 (408)
T TIGR03520 310 IVGDISDEFD---DEDLIYSKID-------------DNNYVFEGKTSLKDFYKILK 349 (408)
T ss_pred HhCCCCCcCC---cCccceEEeC-------------CCeEEEEeccCHHHHHHHhC
Confidence 8754332110 0111222222 23456778889998888873
No 139
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.29 E-value=2.9e-11 Score=120.58 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=96.3
Q ss_pred ccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC---CcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCC
Q 016866 244 ANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDA 320 (381)
Q Consensus 244 ~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~ 320 (381)
.+..+++++.+++++.+++++|.+++++.+||+|++ ++++|+++.+|+..... .+.++.+
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~~---------~~~~V~d-------- 163 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKD---------KSTPVSE-------- 163 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhccc---------CCCCHHH--------
Confidence 355678899999999999999999999999999963 89999999999874211 1356776
Q ss_pred CCCcccCCC--cceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866 321 NPSLGFNGQ--RCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 378 (381)
Q Consensus 321 ~~~~~~m~~--~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l 378 (381)
+|.. ++.++.+++++.++++.|.+++++.+||+|+ +++++|+||.+||++..
T Consensus 164 -----iMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 164 -----VMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNR 217 (495)
T ss_pred -----hhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhcc
Confidence 5654 7899999999999999999999999999994 78999999999999764
No 140
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.29 E-value=4.9e-11 Score=94.95 Aligned_cols=111 Identities=25% Similarity=0.366 Sum_probs=92.3
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.++++.|.+++...+||+++ .| +++|+++..++.+++..... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~--------~~----------- 56 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPSL--------YD----------- 56 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhcccc--------cc-----------
Confidence 4678999999999999999999999999976 46 79999999999886532100 00
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~ 293 (381)
...+.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++..|++.
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 01344557788999999999999999999999999999997 799999999999874
No 141
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.29 E-value=5.8e-11 Score=94.98 Aligned_cols=109 Identities=18% Similarity=0.277 Sum_probs=87.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+++...+||+|++..+| +++|+++..|++... . ...+
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-~-----------~~~~--------- 58 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-D-----------SETP--------- 58 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-c-----------cCCC---------
Confidence 467888999999999999999999999997422246 899999999986411 0 0111
Q ss_pred ccccccccCCCceEecC--CCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRP--TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
+.++|...+..+.. ++++.++++.|.+++...+||+|++|+++|++|.+|+++
T Consensus 59 ---v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 59 ---LSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred ---HHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 23446666667755 999999999999999999999998899999999999874
No 142
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=5.4e-11 Score=96.13 Aligned_cols=120 Identities=22% Similarity=0.396 Sum_probs=93.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+++.+.+||+|+ +| +++|+++..++++.......... ..... ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~-------~~~ 65 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK---AG---ELIGIITRRDIIRAGSVRTSVED---QQRTQ-------TKA 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEcHHHHhhccccccccc---hhhhh-------hhc
Confidence 5678999999999999999999999999975 57 89999999999874311100000 00000 011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
...+.++|..++.++.+++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 22345567778899999999999999999999999999998899999999999875
No 143
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=8.3e-11 Score=93.28 Aligned_cols=108 Identities=19% Similarity=0.421 Sum_probs=90.3
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 236 (381)
Q Consensus 157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~ 236 (381)
++++++.+++++.+|++.|.+++...+||+++ | +++|+++..++.+.+.... ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~dl~~~~~~~~---------~~~~-------- 57 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG----G---RVVGIISRRDVEKALRHGL---------GHAP-------- 57 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC----C---EEEEEEEHHHHHHHHhccc---------ccCc--------
Confidence 36788999999999999999889999999964 5 7999999999987542210 1112
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
+.++|..++.++.+++++.++++.|.+++.+.+||++ +|+++|++|..|+++
T Consensus 58 ----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 58 ----VKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ----HHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 3344777889999999999999999999999999999 899999999999874
No 144
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.28 E-value=6.5e-11 Score=117.93 Aligned_cols=110 Identities=17% Similarity=0.202 Sum_probs=92.1
Q ss_pred ceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccc
Q 016866 159 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV 238 (381)
Q Consensus 159 ~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~ 238 (381)
.+++.+++++.+|++.|.+++.+.+||+|+..+++ +++|++|..|+.... ...+.
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~~-----------~~~~~----------- 161 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRISR-----------MSLDT----------- 161 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhccc-----------cCCCC-----------
Confidence 36899999999999999999999999997522346 899999999995310 01122
Q ss_pred cccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866 239 PRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 294 (381)
Q Consensus 239 ~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l 294 (381)
.+.++|.+ +++++.+++++.+|+++|.++++..+||+|++|+++|+||.+|+++.
T Consensus 162 -~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 162 -KVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred -CHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 34455875 78899999999999999999999999999988999999999999984
No 145
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=7.3e-11 Score=95.45 Aligned_cols=120 Identities=23% Similarity=0.324 Sum_probs=94.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+++++.+||+++ | +++|+++..++.+.+........ ....+ .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~--~~~~ 65 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED----N---ELVGVISDRDYLKAISPFLGTAG-------ETEKD--LATL 65 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC----C---eEEEEEEHHHHHHHHHHHhcccc-------chHHH--HHHH
Confidence 5678999999999999999999999999963 5 79999999999987654322100 00000 0111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
...+.++|..+++.+.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 22345667788999999999999999999999999999998899999999999875
No 146
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=6.9e-11 Score=96.56 Aligned_cols=124 Identities=15% Similarity=0.269 Sum_probs=92.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++.+.+++++.+|++.|.+.+.+.+||+++ ++ +++|++|..++..++........ ........ ....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~-----~~~~~~~~-~~~~ 69 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKAR-----TGDRSGEK-ERML 69 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcc-----hhhhhhhh-hhhc
Confidence 4678899999999999999999999999976 46 89999999999876532110000 00000000 0001
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEc--CCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiis~~Di~~ 293 (381)
...+.++|..+++++.+++++.++++.|.+.+...+||++ ++|+++|+||.+|+++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 1234556888899999999999999999999999999984 4699999999999874
No 147
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.27 E-value=2.5e-11 Score=117.76 Aligned_cols=119 Identities=18% Similarity=0.314 Sum_probs=104.4
Q ss_pred CCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866 152 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 231 (381)
Q Consensus 152 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~ 231 (381)
+..+..+.++++|.+|+.+|+..|.++|++.+.+++. ++ ...||+|.+|+...+....+. ..
T Consensus 152 ~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------~~----- 213 (610)
T COG2905 152 GEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------KT----- 213 (610)
T ss_pred HHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------cc-----
Confidence 4477899999999999999999999999999999975 56 799999999999977653322 12
Q ss_pred ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866 232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 296 (381)
Q Consensus 232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~ 296 (381)
.+|+++|+.|++++...+.+.+|.-+|.++++.++||++ +|+++|++|..||+++..
T Consensus 214 -------~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 214 -------QKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred -------cchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 356667999999999999999999999999999999997 799999999999999776
No 148
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.27 E-value=6.6e-11 Score=93.64 Aligned_cols=107 Identities=21% Similarity=0.350 Sum_probs=87.0
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 236 (381)
Q Consensus 157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~ 236 (381)
++++.+.+++++.++++.|.+++...+||+++ .| +++|+++..+++... . ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~-----~-------~~~~-------- 55 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFET-----D-------LDKP-------- 55 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeecc-----c-------CCCC--------
Confidence 35678899999999999999999999999976 46 899999999986410 0 1112
Q ss_pred cccccccccCCCceEecC-CCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 237 WVPRIGEANGRPFAMLRP-TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 237 ~~~~v~~~~~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
+.++|...+..+.+ ++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus 56 ----v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 56 ----VSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred ----HHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 33446555666666 999999999999999999999998899999999999874
No 149
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.3e-10 Score=92.44 Aligned_cols=110 Identities=17% Similarity=0.364 Sum_probs=88.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
.+.++.+++++.+|++.|.+++.+.++|.+ +| +++|+++..++++++...... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~----------- 57 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLD----------- 57 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhc-----------
Confidence 467889999999999999888887777764 36 899999999999866431100 001
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
..+.++|..++.++.+++++.++++.|.+++...+||++ +|+++|++|.+|+++
T Consensus 58 -~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 -TTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred -CCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 124455777888999999999999999999999999998 699999999999875
No 150
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=1.2e-10 Score=92.59 Aligned_cols=110 Identities=20% Similarity=0.373 Sum_probs=89.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHH-HHhhhcccCCCCCccccCccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSIQLGT 236 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~-~l~~~~~~~~~~~~~~~~~i~~l~ig~ 236 (381)
+++++.+++++.+|++.|.+++.+.+||+++ | +++|+++..+++. .+.... . ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~i~~~~l~~~~~~~~~-------~-~~---------- 56 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN----D---RLVGIVTDRDIVVRAVAEGR-------D-PD---------- 56 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEhHHHHHHHhhccC-------C-cc----------
Confidence 4678999999999999999999999999963 6 8999999999873 221110 0 00
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
...+.++|...+.++.+++++.++++.|.+.+.+++||++++|+++|+++..|+++
T Consensus 57 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 57 -TTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred -cCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 01234457778889999999999999999999999999998899999999999875
No 151
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.26 E-value=2.7e-10 Score=112.84 Aligned_cols=116 Identities=18% Similarity=0.277 Sum_probs=97.0
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866 154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 233 (381)
Q Consensus 154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ 233 (381)
.|..+++++.+++++.+|++.|.+++++++||+|++...+ +++|+++.+|++... ....+
T Consensus 85 ~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~------------~~~~~----- 144 (450)
T TIGR01302 85 GIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK------------DKGKP----- 144 (450)
T ss_pred ceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh------------cCCCC-----
Confidence 5677899999999999999999999999999997621115 799999999996411 01122
Q ss_pred ccccccccccccC-CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866 234 LGTWVPRIGEANG-RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 296 (381)
Q Consensus 234 ig~~~~~v~~~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~ 296 (381)
+.++|. .+++++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++...
T Consensus 145 -------V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 145 -------VSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK 201 (450)
T ss_pred -------HHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence 344577 48999999999999999999999999999999999999999999998643
No 152
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.25 E-value=1.5e-10 Score=91.71 Aligned_cols=109 Identities=23% Similarity=0.369 Sum_probs=90.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++.+.+++++.+|++.|.+.+.+.+||+++ + +++|+++..|+.+....... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~--------~~----------- 55 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD----G---RLVGIVTLADIRRVPAEGRE--------AT----------- 55 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC----C---eEEEEEEHHHHHHHHhcCcc--------cc-----------
Confidence 5678999999999999999999999999964 5 79999999999875432110 00
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
..+.+.|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus 56 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 56 -VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred -cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 1233447778999999999999999999999999999998899999999999875
No 153
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.25 E-value=8.6e-11 Score=117.27 Aligned_cols=115 Identities=14% Similarity=0.179 Sum_probs=96.9
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccc
Q 016866 155 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 234 (381)
Q Consensus 155 ~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i 234 (381)
|..+++++.+++++.+|+++|.+++++.+||+|++...+ +++|++|..|+.... ....
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v~------------~~~~------- 163 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFVN------------DRET------- 163 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhcc------------ccCC-------
Confidence 678899999999999999999999999999997522236 899999999995410 1122
Q ss_pred cccccccccccCCC--ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866 235 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 296 (381)
Q Consensus 235 g~~~~~v~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~ 296 (381)
.+.++|+++ ++++.+++++.+|+++|.+++...+||+|++++++|+||++|+++...
T Consensus 164 -----~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~ 222 (505)
T PLN02274 164 -----KLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKG 222 (505)
T ss_pred -----cHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence 244557766 889999999999999999999999999999999999999999999665
No 154
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=5.8e-11 Score=96.88 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=86.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhh--hcccCCCCCccccCcccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR--HFKHSSSSLPILQQPVSSIQLG 235 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~--~~~~~~~~~~~~~~~i~~l~ig 235 (381)
+++++.+++++.+|++.|.+++.+.+||+++ .| +++|+++..|+.+.... ..... ......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~-------- 64 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSEL-------- 64 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcC---CCchhe--------
Confidence 4678899999999999999999999999975 56 79999999999862210 00000 000111
Q ss_pred ccccccccccCCCceEe------cCCCCHHHHHHHHHhCCCcEEEEEcCC-CcEEEEEeHHHHHH
Q 016866 236 TWVPRIGEANGRPFAML------RPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA 293 (381)
Q Consensus 236 ~~~~~v~~~~~~~~~~v------~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~ 293 (381)
.+.++|.+++..+ .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus 65 ----~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 65 ----TVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ----EHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 2344466554333 368899999999999999999999986 79999999999875
No 155
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.25 E-value=2e-10 Score=90.50 Aligned_cols=111 Identities=23% Similarity=0.457 Sum_probs=92.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++.+.+++++.++++.|.+++.+.+||+++ ++ +++|+++..++++++........ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~-------~---------- 58 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL-------V---------- 58 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc-------c----------
Confidence 4677899999999999999999999999976 46 89999999999987754322110 0
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++|..++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus 59 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 59 --TVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred --cHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 022346667888999999999999999999999999998899999999999875
No 156
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.25 E-value=9.9e-11 Score=96.76 Aligned_cols=110 Identities=22% Similarity=0.325 Sum_probs=80.5
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccc-------cccHHHHHhcCCCC
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD-------EMNIHQALQLGQDA 320 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~-------~~~v~~~l~~~~~~ 320 (381)
++.++.+++++.+|++.|.+++++++||+|++|+++|+++..|+++............. ...+.++.....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 79 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI-- 79 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh--
Confidence 56789999999999999999999999999999999999999999986543221110000 001112111000
Q ss_pred CCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCC
Q 016866 321 NPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAG 361 (381)
Q Consensus 321 ~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~ 361 (381)
-.+.|..+++++.+++++.+|++.|.+++++++||+|++
T Consensus 80 --~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 80 --SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred --hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 001245678999999999999999999999999999953
No 157
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25 E-value=1.9e-10 Score=91.43 Aligned_cols=110 Identities=21% Similarity=0.387 Sum_probs=89.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.++++.|.+.+.+.+||+++ + +++|+++..++++++...... ....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~---------- 58 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PREV---------- 58 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------cccC----------
Confidence 4677899999999999999999999999964 3 699999999999865421100 0111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++|.+++.++.+++++.++++.|.+++...+||+|++ +++|+++.+|+++
T Consensus 59 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 59 --PVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred --CHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 2334477788899999999999999999999999999865 9999999999864
No 158
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=1.5e-10 Score=90.88 Aligned_cols=102 Identities=19% Similarity=0.394 Sum_probs=86.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++.+.+++++.++++.|.+++.+.+||+++ + +++|+++..++++.. ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~Giv~~~~l~~~~-------------~~~~--------- 52 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED----G---KLVGIITSRDVRRAH-------------PNRL--------- 52 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC----C---EEEEEEehHHhhccc-------------ccCC---------
Confidence 4677899999999999999999999999953 5 799999999997621 0111
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT 292 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~ 292 (381)
+.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|..|++
T Consensus 53 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 53 ---VADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred ---HHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 23446778899999999999999999999999999996 9999999999986
No 159
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.24 E-value=1.7e-10 Score=91.66 Aligned_cols=109 Identities=14% Similarity=0.235 Sum_probs=88.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+.+.+.+++++.+|++.|.+++...+||+++ | +++|+++..++++.+..... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~~~~~-------~~~----------- 56 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG----D---PRLGIVTRTDLLDAVLLDGL-------PSS----------- 56 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC----C---eEEEEEEHHHHHHHHHcCCC-------CCC-----------
Confidence 3568899999999999999999999999953 5 69999999999885532100 011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
..+.++|.+++..+.+++++.++++.|.+++...+||+|+ |+++|++|..|+++
T Consensus 57 -~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 57 -TPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred -CCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 1233457778899999999999999999999999999984 89999999999875
No 160
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=1e-10 Score=92.70 Aligned_cols=102 Identities=16% Similarity=0.252 Sum_probs=84.5
Q ss_pred eCCCCCHHHHHHHHHhCC-----cceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866 162 AGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 236 (381)
Q Consensus 162 v~~~~sl~~a~~~m~~~~-----i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~ 236 (381)
+.+++++.++++.|.+++ +..+||+++ +| +++|+++..++++. . .+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~------------~-~~~--------- 53 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA------------D-PDT--------- 53 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC------------C-Ccc---------
Confidence 568899999999998777 478999975 46 79999999988651 0 011
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHH
Q 016866 237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL 294 (381)
Q Consensus 237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l 294 (381)
.+++++..++..+.+++++.++++.|.+++...+||+|++|+++|+++..|+++.
T Consensus 54 ---~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 54 ---PVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred ---hHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 2334467788999999999999999999999999999988999999999999864
No 161
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.23 E-value=2e-10 Score=90.38 Aligned_cols=105 Identities=20% Similarity=0.431 Sum_probs=88.3
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866 157 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 236 (381)
Q Consensus 157 ~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~ 236 (381)
++++++.++.++.++++.|.+++...+||+++ + +++|+++..+++.. . ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~----~---~~~g~v~~~~l~~~--------~-----~~~--------- 52 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN----G---KVVGIVSARDLLGK--------D-----PDE--------- 52 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC----C---EEEEEEEHHHhhcc--------C-----ccc---------
Confidence 45778999999999999998888889999953 5 79999999999751 0 011
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.++++|...+.++.+++++.++++.|.+++.+.+||++++|+++|+++..|+++
T Consensus 53 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 53 ---TVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred ---cHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 233447777889999999999999999999999999998899999999999874
No 162
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.22 E-value=2.1e-10 Score=114.52 Aligned_cols=115 Identities=19% Similarity=0.183 Sum_probs=96.4
Q ss_pred CCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccc
Q 016866 154 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ 233 (381)
Q Consensus 154 ~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ 233 (381)
.+..+++++.+++++.+|+++|.+++++.+||++++..++ +++|+++.+|+.. .. ....
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~~-----------~~~~------ 159 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-VK-----------DKST------ 159 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-cc-----------cCCC------
Confidence 4567889999999999999999999999999997532246 8999999999963 10 0112
Q ss_pred ccccccccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866 234 LGTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 295 (381)
Q Consensus 234 ig~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~ 295 (381)
.+.++|.+ +++++.+++++.+++++|.+++...+||+|++++++|+||++|+++..
T Consensus 160 ------~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 160 ------PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred ------CHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 24455876 789999999999999999999999999999999999999999999853
No 163
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.22 E-value=1.8e-10 Score=91.01 Aligned_cols=108 Identities=19% Similarity=0.383 Sum_probs=86.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
+++++.+++++.+|++.|.+++++.+||+++ + +++|+++..++.+++...... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----~---~~~G~v~~~dl~~~~~~~~~~-------~~~---------- 57 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD----G---RVVGSIDESDLLDALIEGKAK-------FSL---------- 57 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC----C---eeEEEEeHHHHHHHHhccccc-------cCc----------
Confidence 5678899999999999999999999999963 5 799999999999866432110 011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++|.+++.++.+++++.+++++|.+ . ..+||++++|+++|++|.+|+++
T Consensus 58 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 58 --PVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred --CHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 2334466778899999999999999988 3 34788988899999999999875
No 164
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.19 E-value=2.9e-10 Score=91.61 Aligned_cols=119 Identities=16% Similarity=0.292 Sum_probs=92.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
++.++.+++++.+|++.|.+.+...+||+|+ +| +++|+++..++.+.......... ..++ ...+
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~---------~~~~-~~~~ 65 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLS---------EHEL-YLLL 65 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccch---------hhhh-hhhc
Confidence 4678899999999999999999999999976 56 89999999999875432211100 0000 0011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
...+.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++..|+++
T Consensus 66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 12344557778899999999999999999999999999986 99999999999875
No 165
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.19 E-value=3.2e-10 Score=89.16 Aligned_cols=100 Identities=18% Similarity=0.293 Sum_probs=84.7
Q ss_pred eEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccccc
Q 016866 160 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 239 (381)
Q Consensus 160 i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~ 239 (381)
+++.+++++.+|++.|.+.+.+.+||+++ | +++|+++..++.+... .+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~----~---~~~G~v~~~~l~~~~~--------------~~----------- 51 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY----N---KFLGAVYLKDIENATY--------------GD----------- 51 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC----C---EEEEEEEHHHHhhhcc--------------cc-----------
Confidence 56789999999999999999999999963 5 7999999999976210 11
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
+.++|..++.++.++.++.++++.|.+++.+.+||+| +|+++|++|.+|++.
T Consensus 52 -~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 52 -VVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred -hhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 2233666788999999999999999999999999998 699999999999875
No 166
>PRK11573 hypothetical protein; Provisional
Probab=99.19 E-value=4.8e-10 Score=109.78 Aligned_cols=122 Identities=13% Similarity=0.224 Sum_probs=99.8
Q ss_pred ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866 240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 316 (381)
Q Consensus 240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~ 316 (381)
+++++|.+ ++.+++.++++.++++.+.+++++++||.++ .+.++|++..+|++.....+. +.......+
T Consensus 188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-------~~~~~~l~~- 259 (413)
T PRK11573 188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-------EFTKENMLR- 259 (413)
T ss_pred ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------cCCHHHHHh-
Confidence 55667864 6899999999999999999999999999976 378999999999987543211 011221111
Q ss_pred CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866 317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380 (381)
Q Consensus 317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~ 380 (381)
++ +++..++++.++.++++.|.+++.|-..|+| +.|...|+||..||+..++|
T Consensus 260 ---------~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivG 312 (413)
T PRK11573 260 ---------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred ---------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhC
Confidence 22 3688999999999999999999999999999 58999999999999999986
No 167
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.19 E-value=2.6e-10 Score=111.30 Aligned_cols=122 Identities=17% Similarity=0.266 Sum_probs=106.2
Q ss_pred cccCCCCCCCCCCCceEeCCCCCHHHHHHHHHh-----CCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCC
Q 016866 145 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 219 (381)
Q Consensus 145 ~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~-----~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~ 219 (381)
+|..+.+|+.|...++++.++.|+.+|+..+.+ ..+..+.|+|. ++ ++.|+++.++++.
T Consensus 128 ~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~---~~---~L~Gvvsl~~Ll~---------- 191 (451)
T COG2239 128 SYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE---KG---KLLGVVSLRDLLT---------- 191 (451)
T ss_pred CCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECC---cc---ceEEEeeHHHHhc----------
Confidence 389999999999999999999999999999874 34788999976 56 8999999999985
Q ss_pred CCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866 220 SSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 297 (381)
Q Consensus 220 ~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~ 297 (381)
...+.+ +.++|.+.++++.+++...++.+.+.+++.-++||||++++++|++|..|++..+.+
T Consensus 192 ---a~~~~~------------i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e 254 (451)
T COG2239 192 ---AEPDEL------------LKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE 254 (451)
T ss_pred ---CCcHhH------------HHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence 112223 344588889999999999999999999999999999999999999999999997664
No 168
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.17 E-value=1.8e-10 Score=118.02 Aligned_cols=119 Identities=16% Similarity=0.259 Sum_probs=98.7
Q ss_pred CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccc
Q 016866 153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI 232 (381)
Q Consensus 153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l 232 (381)
+.|.++..++++++++.++++.|.+++.+.+||+|+ ++ +++|+++.+|+.+.+...... ..
T Consensus 451 dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~~-------~~------ 511 (574)
T PRK01862 451 ELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRDT-------TD------ 511 (574)
T ss_pred HHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhccccc-------cc------
Confidence 367888899999999999999999999999999976 56 899999999998854321100 01
Q ss_pred cccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC--CcEEEEEeHHHHHHHHh
Q 016866 233 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAK 296 (381)
Q Consensus 233 ~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~lvGiis~~Di~~l~~ 296 (381)
..+.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|++|++|+++...
T Consensus 512 ------~~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 512 ------KTAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred ------chHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 12345588889999999999999999999999999999876 58999999999998654
No 169
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=6.1e-10 Score=93.08 Aligned_cols=126 Identities=25% Similarity=0.466 Sum_probs=95.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcc-c---CCCCCccccCcccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK-H---SSSSLPILQQPVSSIQ 233 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~-~---~~~~~~~~~~~i~~l~ 233 (381)
+++++.+++++.+|++.|.+++++.+||+++ + +++|+++..++++++..... . .+........++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG----G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF- 73 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC----C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence 5678999999999999999999999999963 5 79999999999987753321 0 001111122222221
Q ss_pred cccc-----------ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 234 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 234 ig~~-----------~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
..| ...+.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|++.
T Consensus 74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 111 12355678888999999999999999999999999999987 99999999999864
No 170
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.15 E-value=2.7e-10 Score=105.58 Aligned_cols=109 Identities=16% Similarity=0.226 Sum_probs=91.6
Q ss_pred CCCCCC-ceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866 153 RPCPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 231 (381)
Q Consensus 153 ~~~~~~-~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~ 231 (381)
.+|.++ ++.+.+++++.+|++.|.+.+.+.+||+|+ +| +++|+++..|+.+++.... ....
T Consensus 159 ~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~---- 220 (268)
T TIGR00393 159 DLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKS---- 220 (268)
T ss_pred HHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccC----
Confidence 367777 899999999999999999999999999976 56 8999999999988543110 0112
Q ss_pred ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEe
Q 016866 232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 287 (381)
Q Consensus 232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis 287 (381)
.+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus 221 --------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 221 --------EVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred --------cHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 244558888999999999999999999999999999998899999985
No 171
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.13 E-value=7.9e-10 Score=87.30 Aligned_cols=102 Identities=15% Similarity=0.179 Sum_probs=86.3
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
....+.+++++.++.+.|.+.+...+||+++...+| +++|+++..++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~------------------------ 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN------------------------ 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH------------------------
Confidence 456789999999999999999889999996411136 79999999999875421
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
+|..++.++.+++++.++++.|.+++.+.+||++ +|+++|+++.+|+++
T Consensus 56 ------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 ------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred ------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 2555788999999999999999999999999995 799999999999875
No 172
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.08 E-value=1.4e-09 Score=87.42 Aligned_cols=113 Identities=12% Similarity=0.193 Sum_probs=87.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCC-cceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT 236 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~-i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~ 236 (381)
++.++.+++++.+|++.|.+++ .+.+||+++ | +++|+++..++++++...... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~----~---~~~G~v~~~~l~~~~~~~~~~-----~~~----------- 58 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD----G---RPVGLIMREALMELLSTPYGR-----ALY----------- 58 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC----C---eeEEEEEHHHHHHHHhchhhH-----HHH-----------
Confidence 4567889999999999998877 899999963 5 799999999998755421100 000
Q ss_pred cccccccccCCCceEecCCCCHHHHHHHHHhCCCc---EEEEEcCCCcEEEEEeHHHHHH
Q 016866 237 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVS---SIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 237 ~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVvd~~g~lvGiis~~Di~~ 293 (381)
....++++|..++.++.+++++.++++.|.+++.. ..||++++|+++|++|..|+++
T Consensus 59 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 59 GKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 01134556888899999999999999999988753 4578888899999999999864
No 173
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=3.3e-09 Score=83.41 Aligned_cols=104 Identities=21% Similarity=0.368 Sum_probs=86.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
++.++.+++++.+++..|.+.+.+.+||+++ .+ +++|+++..+++... . ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~~----~---------~~~--------- 53 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRNP----E---------EEQ--------- 53 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhcc----c---------cch---------
Confidence 4678889999999999999989999999975 46 799999999997510 0 011
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
+.++|..++.++.+++++.++++.|.+.+.+.+||+| +|+++|+++..|+++
T Consensus 54 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~ 105 (106)
T cd04638 54 ---LALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR 105 (106)
T ss_pred ---HHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence 2233666788899999999999999999999999998 479999999999875
No 174
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.06 E-value=1.1e-09 Score=100.66 Aligned_cols=112 Identities=14% Similarity=0.256 Sum_probs=96.8
Q ss_pred CCC--CCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866 154 PCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 231 (381)
Q Consensus 154 ~~~--~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~ 231 (381)
+|. .....+.+++++.+-.++-.+.|.+|+||+|. .. +++|++|.+|++.. .-+.++
T Consensus 193 i~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~~-------------~~~t~i-- 251 (432)
T COG4109 193 IMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLDK-------------KPSTTI-- 251 (432)
T ss_pred hccccccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhcC-------------CCCccH--
Confidence 444 66778899999999999999999999999987 45 89999999999761 112233
Q ss_pred ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866 232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 296 (381)
Q Consensus 232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~ 296 (381)
..+|+++++++.+.+++..+.++|.-.++.-+||+|++.+++|++|++|+++.+.
T Consensus 252 ----------eKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 252 ----------EKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred ----------HHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 3449999999999999999999999999999999999999999999999998665
No 175
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.06 E-value=2.1e-09 Score=106.17 Aligned_cols=120 Identities=18% Similarity=0.324 Sum_probs=99.2
Q ss_pred ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEc-CCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866 240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 316 (381)
Q Consensus 240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~ 316 (381)
.++++|.+ ++..++.+.++.++.+.+.+++++++||++ +.+.++|++..+|++.....+.. . .....
T Consensus 207 ~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~-----~~~~~---- 276 (429)
T COG1253 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D-----LDLRV---- 276 (429)
T ss_pred EeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c-----cchhh----
Confidence 34455754 688899999999999999999999999999 56799999999999996653321 0 11111
Q ss_pred CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866 317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380 (381)
Q Consensus 317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~ 380 (381)
.. .++..++++.++.++++.|.+.+.|-..|+| +.|.+.|+||..||+..++|
T Consensus 277 ---------~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 277 ---------LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred ---------cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhC
Confidence 11 2688999999999999999999999999999 58999999999999999987
No 176
>PRK11573 hypothetical protein; Provisional
Probab=99.04 E-value=9.2e-09 Score=100.80 Aligned_cols=165 Identities=18% Similarity=0.197 Sum_probs=122.4
Q ss_pred hhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhc
Q 016866 51 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 130 (381)
Q Consensus 51 ~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~ 130 (381)
++.++.|+|-+-.+++.++.+.|+.++++.+.+.+.+..||++.+..+++|++..+|++..+.. . ...
T Consensus 185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~---~-~~~-------- 252 (413)
T PRK11573 185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---K-KEF-------- 252 (413)
T ss_pred CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc---c-CcC--------
Confidence 4688999998889999999999999999999999999999998877789999999999864321 0 011
Q ss_pred cHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHH
Q 016866 131 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 210 (381)
Q Consensus 131 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~ 210 (381)
....+.+ ..+++..|+++.++.++++.|.+++.|-..|+|+ -| ...|++|..||+..
T Consensus 253 ~~~~l~~-----------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---yG---~~~GiVTleDilEe 309 (413)
T PRK11573 253 TKENMLR-----------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YG---DIQGLVTVEDILEE 309 (413)
T ss_pred CHHHHHh-----------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---CC---CeEEEeeHHHHHHH
Confidence 0111111 1357889999999999999999999999999987 67 79999999999998
Q ss_pred HhhhcccCCCCCccccCccccccccccccccccccCCCceEecCCCCHHHHHHHH
Q 016866 211 ICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 265 (381)
Q Consensus 211 l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m 265 (381)
+......... ......+...+- ..+.++...++.+..+.+
T Consensus 310 ivGei~de~d--~~~~~~i~~~~~-------------~~~~v~G~~~l~d~~~~l 349 (413)
T PRK11573 310 IVGDFTTSMS--PTLAEEVTPQND-------------GSVIIDGTANVREINKAF 349 (413)
T ss_pred HhCCCCcccC--cccccceEEecC-------------CEEEEEeeeEHHHHHHHh
Confidence 8765543210 000111222222 234567777777777766
No 177
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.6e-09 Score=105.86 Aligned_cols=117 Identities=17% Similarity=0.277 Sum_probs=101.7
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhC-----CCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHH
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQA-----DVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ 312 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~ 312 (381)
..++|..|...++++.++.|+.+++..+.+. .+..+.|+|++++++|+++.++++..-. +..+.+
T Consensus 131 e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~ 200 (451)
T COG2239 131 EDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKD 200 (451)
T ss_pred hhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHH
Confidence 3467788999999999999999999999843 5678999999999999999999886221 234555
Q ss_pred HHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866 313 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 378 (381)
Q Consensus 313 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l 378 (381)
+|.+.++++.+++..+++.+.+.+++.-.+|||| ++++++|+||..|++..+
T Consensus 201 -------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi 252 (451)
T COG2239 201 -------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVI 252 (451)
T ss_pred -------------HhcccceeecccCCHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHH
Confidence 6777899999999999999999999999999999 479999999999998765
No 178
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.01 E-value=2.7e-09 Score=106.53 Aligned_cols=116 Identities=12% Similarity=0.215 Sum_probs=92.7
Q ss_pred CCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccc
Q 016866 152 GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS 231 (381)
Q Consensus 152 g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~ 231 (381)
+.+|.+++.++.+++++.+|++.|.+++++.+||+|+ ++ +++|+++..|+++.+..... ....
T Consensus 338 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~---- 400 (454)
T TIGR01137 338 KDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKA-------NPDD---- 400 (454)
T ss_pred HHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCC-------CcCC----
Confidence 3478889999999999999999999999999999975 56 79999999999986542110 0111
Q ss_pred ccccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866 232 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 295 (381)
Q Consensus 232 l~ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~ 295 (381)
.+.++|.+++.++.+++++.++++.|.+++ .|+|+++|+++|+||.+|+++.+
T Consensus 401 --------~v~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 401 --------AVSKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --------CHHHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 234457778889999999999999998764 35555579999999999998853
No 179
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.99 E-value=4.8e-09 Score=86.66 Aligned_cols=113 Identities=19% Similarity=0.179 Sum_probs=79.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCC-cccc---Ccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL-PILQ---QPVSSIQ 233 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~-~~~~---~~i~~l~ 233 (381)
.++++.+++++.+|++.|.+++.+.+||+|+ +| +++|++|..|+++++........... .... ..+.++.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 75 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC 75 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence 4688999999999999999999999999976 56 89999999999997753221100000 0000 0000010
Q ss_pred ccccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC
Q 016866 234 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN 279 (381)
Q Consensus 234 ig~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 279 (381)
-...+.+.|..+++++.+++++.+|++.|.+++++++||+|++
T Consensus 76 ---~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 76 ---TKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred ---hhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 0001112245678999999999999999999999999999864
No 180
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.98 E-value=1.5e-09 Score=75.47 Aligned_cols=55 Identities=31% Similarity=0.509 Sum_probs=51.5
Q ss_pred ccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866 242 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 296 (381)
Q Consensus 242 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~ 296 (381)
+++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++++.
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 5678889999999999999999999999999999999999999999999998653
No 181
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.97 E-value=1.8e-09 Score=75.16 Aligned_cols=54 Identities=28% Similarity=0.413 Sum_probs=50.5
Q ss_pred cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866 326 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380 (381)
Q Consensus 326 ~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~ 380 (381)
+|.++++++++++++.++++.|.+++++++||+|+ +|+++|+||.+||++++++
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHHHHG
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhhhhC
Confidence 67778999999999999999999999999999994 7999999999999999864
No 182
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.81 E-value=2.6e-07 Score=89.02 Aligned_cols=110 Identities=16% Similarity=0.241 Sum_probs=91.1
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 326 (381)
Q Consensus 247 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 326 (381)
.......++.+..++++.|...+...+.|+|+++++.|.++..++....... .++.+ .
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~-------------~ 307 (363)
T TIGR01186 250 TGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQD-------------V 307 (363)
T ss_pred ccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhh-------------h
Confidence 3444566778899999999999999999999999999999999988755421 12333 2
Q ss_pred CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866 327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380 (381)
Q Consensus 327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~ 380 (381)
+.....++.++++|.+++..|.+++.. +||+|+ +|+++|+||..++++++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 308 LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred hccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHHh
Confidence 234567999999999999999999998 999994 7999999999999999864
No 183
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.76 E-value=3.2e-07 Score=90.67 Aligned_cols=129 Identities=19% Similarity=0.320 Sum_probs=106.9
Q ss_pred hhCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhc
Q 016866 51 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 130 (381)
Q Consensus 51 ~~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~ 130 (381)
.+.++.++|-+..+++.++.+.++.++...+.+.+.+..||++.....++|++..+|++.....-.. ...
T Consensus 204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~------- 273 (429)
T COG1253 204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLD------- 273 (429)
T ss_pred CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccc-------
Confidence 4688899998888999999999999999999999999999999667789999999999875532110 000
Q ss_pred cHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHH
Q 016866 131 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 210 (381)
Q Consensus 131 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~ 210 (381)
.. ..-.+++.|+++.++.++++.|.+.+.|-..|+|+ -| .+.|++|..||+..
T Consensus 274 -~~--------------------~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---yG---~~~GlVTleDIiEe 326 (429)
T COG1253 274 -LR--------------------VLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDE---YG---GVEGLVTLEDIIEE 326 (429)
T ss_pred -hh--------------------hcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---CC---CeEEEeEHHHHHHH
Confidence 00 01237899999999999999999999999999987 57 79999999999998
Q ss_pred Hhhhcc
Q 016866 211 ICRHFK 216 (381)
Q Consensus 211 l~~~~~ 216 (381)
+.....
T Consensus 327 IvGei~ 332 (429)
T COG1253 327 IVGEIP 332 (429)
T ss_pred HhCCCc
Confidence 876554
No 184
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.66 E-value=3.6e-07 Score=89.12 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=87.4
Q ss_pred ecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCcccCCCcc
Q 016866 252 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGFNGQRC 331 (381)
Q Consensus 252 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~m~~~~ 331 (381)
..++.+..+++..|...+.+.++|+|++++++|+++..++......+ .++.++ +....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~-------------~~~~~ 347 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDAA-------------LIDAP 347 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhhh-------------hccCC
Confidence 34667889999999999999999999999999999999997754421 123332 22356
Q ss_pred eEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866 332 QMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380 (381)
Q Consensus 332 ~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~ 380 (381)
.++.++++|.+++..|.+.... +||||+ +|+++|+||..++++++.+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALDR 394 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHHh
Confidence 7999999999999999998776 999994 7999999999999999864
No 185
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.65 E-value=2.1e-07 Score=86.74 Aligned_cols=121 Identities=14% Similarity=0.285 Sum_probs=101.1
Q ss_pred ccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHHHhhhh-hcccccccccHHHHHh
Q 016866 240 RIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKA-YAQIHLDEMNIHQALQ 315 (381)
Q Consensus 240 ~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~l~~~~~-~~~~~~~~~~v~~~l~ 315 (381)
+|.|+|.+ .+..+..+++..++.+.+....+.++|+..+ -+.++|++..+|+.+++.++. +.. ..+..+.
T Consensus 201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k-----~d~~~~a- 274 (423)
T COG4536 201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTK-----EDILRAA- 274 (423)
T ss_pred eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccH-----hHHHHHh-
Confidence 67777854 6888999999999999999999999999864 356999999999999877544 222 1222221
Q ss_pred cCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866 316 LGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380 (381)
Q Consensus 316 ~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~ 380 (381)
.+++++++++++.+-+..|..++-|--.||| |.|.+.|+||+.||+..++|
T Consensus 275 -------------~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 275 -------------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred -------------cCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence 2588999999999999999999999999999 58999999999999999886
No 186
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.61 E-value=8.7e-08 Score=94.23 Aligned_cols=137 Identities=20% Similarity=0.322 Sum_probs=106.0
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCC-----CcEEEEEeHHHHHHHHhhhhhccc--ccc------
Q 016866 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-----DSLLDIYSRSDITALAKDKAYAQI--HLD------ 306 (381)
Q Consensus 240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~lvGiis~~Di~~l~~~~~~~~~--~~~------ 306 (381)
+++++|+++++++..-+.+..+.+.+.....+.+||||+. +++.|+|-++.++.+++++.+... .-.
T Consensus 583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~ 662 (762)
T KOG0474|consen 583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR 662 (762)
T ss_pred hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence 5689999999999999999999999999999999999961 589999999999998876554311 000
Q ss_pred cccHHHHHhcCC---------CCCC---Ccc-cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHH
Q 016866 307 EMNIHQALQLGQ---------DANP---SLG-FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSD 373 (381)
Q Consensus 307 ~~~v~~~l~~~~---------~~~~---~~~-~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~D 373 (381)
..+..++..... .... ... +|+..++++.+++++..+...+.+-+.+++.||+. .++++|++|++|
T Consensus 663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-~~~~~gilTR~D 741 (762)
T KOG0474|consen 663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK-TNRVVGILTRKD 741 (762)
T ss_pred cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC-CCceeEEEehhh
Confidence 112222221100 0000 111 78899999999999999999999999999999994 678899999999
Q ss_pred HHHH
Q 016866 374 VFRF 377 (381)
Q Consensus 374 Il~~ 377 (381)
+.++
T Consensus 742 ~~~~ 745 (762)
T KOG0474|consen 742 LARY 745 (762)
T ss_pred hhhH
Confidence 9854
No 187
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.59 E-value=1.9e-07 Score=81.55 Aligned_cols=112 Identities=14% Similarity=0.383 Sum_probs=96.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcC-CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCccc
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSLGF 326 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 326 (381)
..+++..+.++.+++..+.+...|++||+.+ .+.+.|++-.+|+++++..... ...+.+.|
T Consensus 78 QM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL------------ 139 (293)
T COG4535 78 QMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL------------ 139 (293)
T ss_pred HheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc------------
Confidence 5678999999999999999999999999975 5689999999999997653321 13455533
Q ss_pred CCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866 327 NGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380 (381)
Q Consensus 327 m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~ 380 (381)
+|...++++-.+-..++-+...+.|...|+| +-|-+-|.||..||+..++|
T Consensus 140 --RPav~VPESKrvd~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 140 --RPAVVVPESKRVDRLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred --ccceecccchhHHHHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhc
Confidence 3688999999999999999999999999999 58999999999999999986
No 188
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.55 E-value=1.7e-07 Score=87.97 Aligned_cols=107 Identities=19% Similarity=0.280 Sum_probs=92.3
Q ss_pred CceEecCCCCHHHHHHHHHhCCCcEEEEEcC---CCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCCCCCCc
Q 016866 248 PFAMLRPTASLGSALALLVQADVSSIPIVDD---NDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQDANPSL 324 (381)
Q Consensus 248 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 324 (381)
+++.+.|+.++.++++....++++.+||.++ .++++|+||.+|+-.+ .+. ...+.+
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~------------ 175 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSD------------ 175 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhh------------
Confidence 5778999999999999999999999999964 4699999999999776 211 234444
Q ss_pred ccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 325 GFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 325 ~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
+|..++++.+.+.+|.++-+.|.+++...+||||+ +|.++.+|+++|+.+.
T Consensus 176 -vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 176 -VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKN 226 (503)
T ss_pred -hcccccccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhh
Confidence 77777889999999999999999999999999994 7999999999999874
No 189
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.49 E-value=2.3e-06 Score=79.91 Aligned_cols=130 Identities=22% Similarity=0.333 Sum_probs=107.4
Q ss_pred hCcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhcc
Q 016866 52 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 131 (381)
Q Consensus 52 ~~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~ 131 (381)
.-|+.|+|-....+..+|.++|.++..+.+...-...+|+|..+-.+++|++-++|+++.+.+..+ .+.+++
T Consensus 199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~d~---- 270 (423)
T COG4536 199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKEDI---- 270 (423)
T ss_pred cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHhHH----
Confidence 467889988788999999999999999999999999999998887789999999999887753211 222221
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHH
Q 016866 132 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 211 (381)
Q Consensus 132 i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l 211 (381)
.. ...+++.|+..+++.+-+..|.+++-|-..|+|+ -| .+.|++|..||+.-+
T Consensus 271 --------~~-------------~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE---YG---~i~GLVTLEDIlEEI 323 (423)
T COG4536 271 --------LR-------------AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE---YG---DIQGLVTLEDILEEI 323 (423)
T ss_pred --------HH-------------HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEec---cC---cEEeeeeHHHHHHHH
Confidence 11 1246789999999999999999999999999987 67 899999999999977
Q ss_pred hhhcc
Q 016866 212 CRHFK 216 (381)
Q Consensus 212 ~~~~~ 216 (381)
...+.
T Consensus 324 VGdft 328 (423)
T COG4536 324 VGDFT 328 (423)
T ss_pred hcccc
Confidence 75554
No 190
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.46 E-value=1.9e-06 Score=81.06 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=119.1
Q ss_pred HcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCC---CCCChhHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCc
Q 016866 83 EQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL 159 (381)
Q Consensus 83 ~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 159 (381)
.+.....|++.+ ...-+|..+....+..++..+ .+-+.++ ....+..|+..... ...++
T Consensus 57 r~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~-QA~~v~~vK~~~~g-------------~~~~p 118 (503)
T KOG2550|consen 57 RNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPED-QADMVRRVKNYENG-------------FINNP 118 (503)
T ss_pred hcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHH-HHHHHHHHHHhhcc-------------cccCC
Confidence 344455587754 445678888877766554321 1222221 12234445544332 23567
Q ss_pred eEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccccc
Q 016866 160 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP 239 (381)
Q Consensus 160 i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~ 239 (381)
+.+.|+.++.++++.-..+++..+||.....-.+ +++|++|-+|+ .|+.++ ..
T Consensus 119 ~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~---KLvG~vtsrdi-~f~~~~-----------~~------------ 171 (503)
T KOG2550|consen 119 IVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGS---KLVGIITSRDI-QFLEDN-----------SL------------ 171 (503)
T ss_pred cccCCcccchhhhhhcccccccccccccCCcccc---eeEEEEehhhh-hhhhcc-----------cc------------
Confidence 8899999999999999999999999997533334 89999999999 444211 11
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.++|.+..++.+...++.++-+++.+.+...+||||++|+++.++++.|+.+
T Consensus 172 ~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 172 LVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMK 225 (503)
T ss_pred hhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhh
Confidence 233457777789999999999999999999999999999999999999999987
No 191
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.45 E-value=3.8e-06 Score=80.96 Aligned_cols=109 Identities=10% Similarity=0.192 Sum_probs=88.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
..+...++.+..+++..|...+...+.|++. .+ ++.|.++..++..+..... .+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~~------------~~-------- 304 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKAQ------------GL-------- 304 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcCC------------ch--------
Confidence 3445667788999999999999999999976 55 7999999999987553210 11
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 297 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~ 297 (381)
.+.+...+.++.+++++.+++..|.+++.. +||+|++|+++|+|+..+++..+..
T Consensus 305 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 305 ----QDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD 359 (363)
T ss_pred ----hhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 122444677899999999999999999998 9999999999999999999987654
No 192
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.28 E-value=9.4e-06 Score=79.23 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=85.1
Q ss_pred eCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccccccc
Q 016866 162 AGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 241 (381)
Q Consensus 162 v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v 241 (381)
..++.+..+|+..|..++...+.|+|+ ++ +++|+++..++.+..... .++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~~----------- 340 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIER---GN---KFVGAVSIDSLKTALTQQ------------QGLD----------- 340 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcC---CC---cEEEEEeHHHHHhhhhcC------------Cchh-----------
Confidence 446678999999999999999999976 67 899999999997754211 1111
Q ss_pred ccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh
Q 016866 242 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD 297 (381)
Q Consensus 242 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~ 297 (381)
+.+.....++.+++++.+++..+.+.... +||+|++|+++|+|+..++++.+..
T Consensus 341 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 341 -AALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred -hhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 12344577899999999999999987766 9999999999999999999997653
No 193
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.07 E-value=2.8e-05 Score=68.23 Aligned_cols=146 Identities=18% Similarity=0.291 Sum_probs=109.9
Q ss_pred CcccccCCCCccEEEEcCCCCHHHHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCChhHHhhccH
Q 016866 53 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI 132 (381)
Q Consensus 53 ~~~~d~~p~s~~vi~ld~~~~v~~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~~~l~~~~i 132 (381)
-.+-|+|-+.++++++..+.++.+.+..+.+...+.-||..+++..+.|++-++|++.+++ ++.... .+
T Consensus 67 l~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~---~~~~~F--------~i 135 (293)
T COG4535 67 LRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR---SDAEPF--------DI 135 (293)
T ss_pred hhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc---CCcccc--------cH
Confidence 3445566556789999999999999999999999999999888888999999999987654 211111 11
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHh
Q 016866 133 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 212 (381)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~ 212 (381)
++ +-+|.+.|+++-.+...++-+..++.|...|+|+ =| -+-|++|..||+.-++
T Consensus 136 ---~~-----------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDE---fG---gVsGLVTIEDiLEqIV 189 (293)
T COG4535 136 ---KE-----------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE---FG---GVSGLVTIEDILEQIV 189 (293)
T ss_pred ---HH-----------------hcccceecccchhHHHHHHHHHhhcCceEEEEec---cC---CeeeeEEHHHHHHHHh
Confidence 11 2468899999999999999999999999999987 56 5899999999999887
Q ss_pred hhcccCCCCCccccCcccccccccc
Q 016866 213 RHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 213 ~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
........... ...+..+.-++|
T Consensus 190 GdIEDE~Deee--~~dI~~ls~~~~ 212 (293)
T COG4535 190 GDIEDEYDEEE--DADIRQLSRHTW 212 (293)
T ss_pred cccccccchhh--hhhhHhhcCCce
Confidence 65543321111 222555554555
No 194
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.06 E-value=9.7e-06 Score=64.74 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=49.2
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
+++++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+
T Consensus 59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 456678888999999999999999999999999999998999999999999864
No 195
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.96 E-value=2.3e-05 Score=77.59 Aligned_cols=143 Identities=15% Similarity=0.218 Sum_probs=104.5
Q ss_pred CCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhc-c-cCCC--CCcc--
Q 016866 151 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF-K-HSSS--SLPI-- 224 (381)
Q Consensus 151 ~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~-~-~~~~--~~~~-- 224 (381)
++++|.++++++..-+.+....+.+.....+..||+|+...+. ...+.|++-.+.++..+.+.. . +.+. ..+.
T Consensus 584 a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~-~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~ 662 (762)
T KOG0474|consen 584 AGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE-AGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRR 662 (762)
T ss_pred HhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc-chhhhHHHHHHHHHHHHHhhhhhccCccccCcchhh
Confidence 3558999999999999999999999999999999998733221 126899999999988775432 1 1000 0000
Q ss_pred ---------ccCccccccccccc----cccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHH
Q 016866 225 ---------LQQPVSSIQLGTWV----PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 291 (381)
Q Consensus 225 ---------~~~~i~~l~ig~~~----~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di 291 (381)
-..+++++.+.... .....+|.+.+.++.+++++..++.++.+-+.+++.||++.++++|++|++|+
T Consensus 663 ~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~ 742 (762)
T KOG0474|consen 663 KFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDL 742 (762)
T ss_pred cCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhh
Confidence 01122232222111 12235678889999999999999999999999999999998999999999999
Q ss_pred HHH
Q 016866 292 TAL 294 (381)
Q Consensus 292 ~~l 294 (381)
...
T Consensus 743 ~~~ 745 (762)
T KOG0474|consen 743 ARY 745 (762)
T ss_pred hhH
Confidence 863
No 196
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.95 E-value=2.8e-05 Score=50.76 Aligned_cols=47 Identities=28% Similarity=0.489 Sum_probs=42.9
Q ss_pred ceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866 331 CQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 378 (381)
Q Consensus 331 ~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l 378 (381)
+.++.+++++.++++.|.+.+.+.+||+++ +++++|+++..|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence 567899999999999999999999999994 58999999999998865
No 197
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.86 E-value=3.9e-05 Score=61.18 Aligned_cols=50 Identities=22% Similarity=0.372 Sum_probs=45.6
Q ss_pred cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 326 FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 326 ~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
+|..++.++.+++++.++++.|...+.+.+||+|+ +|+++|+||..||.+
T Consensus 63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~~ 112 (113)
T cd04597 63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLAE 112 (113)
T ss_pred hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhhc
Confidence 66678889999999999999999999999999994 689999999999864
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.81 E-value=7.7e-05 Score=48.58 Aligned_cols=47 Identities=30% Similarity=0.537 Sum_probs=42.5
Q ss_pred ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866 249 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 295 (381)
Q Consensus 249 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~ 295 (381)
+.++.+++++.++++.|.+.+.+.+||++++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 45788999999999999999999999999889999999999998753
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.00049 Score=68.55 Aligned_cols=127 Identities=17% Similarity=0.235 Sum_probs=89.0
Q ss_pred ceEecCC-CCHHHHHHHHHhCCCcEEEEEc--CCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCC--CC--C
Q 016866 249 FAMLRPT-ASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQ--DA--N 321 (381)
Q Consensus 249 ~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~--~~--~ 321 (381)
..++..+ .++.+...+|.+..++.+||+= +..+++|.+.++|+...+.+.........+.+. -+.+... .+ .
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~~ 636 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGIP 636 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCCC
Confidence 5566555 8999999999999999999874 367899999999987644321110000000111 0000000 00 1
Q ss_pred CCcc---cCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 016866 322 PSLG---FNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFL 378 (381)
Q Consensus 322 ~~~~---~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l 378 (381)
.+.+ +|+..++++...++...+++++.+-+++.+.|.. +|++.|+||..|++++.
T Consensus 637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT 694 (696)
T ss_pred CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence 1222 7888899999999999999999999999887776 69999999999999864
No 200
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.32 E-value=0.0016 Score=60.29 Aligned_cols=169 Identities=18% Similarity=0.200 Sum_probs=113.3
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccc
Q 016866 155 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL 234 (381)
Q Consensus 155 ~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~i 234 (381)
+.+.++.++-+ +.||+++ -+++.+.. +| +++.+=|+.+|+.--... +...-+.....
T Consensus 214 l~KTIvFitHD--LdEAlri-----G~rIaimk----dG---~ivQ~Gtp~eIl~~PAnd---------YV~~Fv~~v~~ 270 (386)
T COG4175 214 LKKTIVFITHD--LDEALRI-----GDRIAIMK----DG---EIVQVGTPEEILLNPAND---------YVRDFVRNVDR 270 (386)
T ss_pred hCCeEEEEecC--HHHHHhc-----cceEEEec----CC---eEEEeCCHHHHHcCccHH---------HHHHHHhcCCh
Confidence 34566666654 8888875 25677774 47 899999999998722111 11111111111
Q ss_pred cccccccccccCC--CceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHH
Q 016866 235 GTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQ 312 (381)
Q Consensus 235 g~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~ 312 (381)
.. .-++.++|.. ....-.+...-..++..+.....+.+.+++..++.+|+++..++.....
T Consensus 271 ~~-VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~---------------- 333 (386)
T COG4175 271 SR-VLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAAL---------------- 333 (386)
T ss_pred hh-eeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcccc----------------
Confidence 00 1134455663 2222222333346778888888888888887888999999988776300
Q ss_pred HHhcCCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866 313 ALQLGQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380 (381)
Q Consensus 313 ~l~~~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~ 380 (381)
..++.++..++++.+.+....+.... ++||| ++++++|+|+...++.+|.+
T Consensus 334 ---------------~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvd-e~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 334 ---------------IDDVLTVDADTPLSEILARIRQAPCP-VAVVD-EDGRYVGIISRGELLEALAR 384 (386)
T ss_pred ---------------cccccccCccchHHHHHHHHhcCCCc-eeEEc-CCCcEEEEecHHHHHHHHhc
Confidence 12467889999999999999888874 78999 58999999999999999875
No 201
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.015 Score=58.24 Aligned_cols=133 Identities=13% Similarity=0.125 Sum_probs=94.2
Q ss_pred CceEeCCC-CCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCC---CCccccCcccccc
Q 016866 158 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPILQQPVSSIQ 233 (381)
Q Consensus 158 ~~i~v~~~-~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~---~~~~~~~~i~~l~ 233 (381)
+++.+..+ .++.|...+|.+...+..||+-+ .++. .++|++..+++.-.+......... .......+..+..
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~ 632 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV 632 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence 46666665 79999999999999998998864 2234 799999999998877532211100 0012223322221
Q ss_pred cccc-ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHH
Q 016866 234 LGTW-VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA 295 (381)
Q Consensus 234 ig~~-~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~ 295 (381)
-+.- .-...++|.-.+.++....+..-+++++.+-+++.+.|.. +|++.|+||.+|+++..
T Consensus 633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT 694 (696)
T ss_pred CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence 1111 1234567777889999999999999999999999988764 89999999999998864
No 202
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.81 E-value=0.0053 Score=59.71 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=72.5
Q ss_pred ccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcCCC
Q 016866 240 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLGQD 319 (381)
Q Consensus 240 ~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~~~ 319 (381)
+++++|.+.......+-+ .+++. ++.+.+.|+|+ |+++..+...+..... +.++.+ +
T Consensus 275 ~a~~~m~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~----- 331 (382)
T TIGR03415 275 TARSLMRPLTDLEHVDGG--WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L----- 331 (382)
T ss_pred eHHHHhcccccccccCcc--hhhhh---cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-----
Confidence 445667433333333322 44433 78899999985 8888777655443111 112222 1
Q ss_pred CCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHHhhc
Q 016866 320 ANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRFLLG 380 (381)
Q Consensus 320 ~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~l~~ 380 (381)
.....++++++++.+++..+.+.+.. ++|+| + |+++|+|+..+++.++.+
T Consensus 332 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 332 --------EAAPTVINPDTLMRDVLAARHRTGGA-ILLVE-N-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred --------cccCcccCCCCcHHHHHHHHhcCCCC-eEEee-C-CeEEEEEeHHHHHHHHhc
Confidence 12467899999999999999888764 88898 4 999999999999999875
No 203
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.14 E-value=0.036 Score=56.76 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=49.8
Q ss_pred CCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhc
Q 016866 153 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF 215 (381)
Q Consensus 153 ~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~ 215 (381)
.+|-+++..+..+++..|.-+.+....++.+|++++ .++- -++|.+..+.+...+..+.
T Consensus 592 ~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esm---iLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 592 HIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESM---ILLGSVARRYLTALLQRHI 650 (931)
T ss_pred eeccccceeeeccCcHHHHHHHHHhCccceeccccC-cccc---eeeehhHHHHHHHHHHhhc
Confidence 589999999999999999988777766999999975 3333 6899999999999997654
No 204
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.39 E-value=0.14 Score=46.34 Aligned_cols=118 Identities=18% Similarity=0.217 Sum_probs=69.5
Q ss_pred CCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccc
Q 016866 156 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG 235 (381)
Q Consensus 156 ~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig 235 (381)
.+-++.|.-+ +.||+++ ..++.|+++ | +++.+-++.+|++.-...|-... ...-....+.+...
T Consensus 186 ~kTivfVTHD--idEA~kL-----adri~vm~~----G---~i~Q~~~P~~il~~Pan~FV~~f--~g~~~~~~~~l~~~ 249 (309)
T COG1125 186 GKTIVFVTHD--IDEALKL-----ADRIAVMDA----G---EIVQYDTPDEILANPANDFVEDF--FGESERGLRLLSLV 249 (309)
T ss_pred CCEEEEEecC--HHHHHhh-----hceEEEecC----C---eEEEeCCHHHHHhCccHHHHHHH--hccccccccccchh
Confidence 3456666554 7888876 367888864 7 89999999888874333221100 00000011111110
Q ss_pred ccccccccccCCCc----eEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHH
Q 016866 236 TWVPRIGEANGRPF----AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA 293 (381)
Q Consensus 236 ~~~~~v~~~~~~~~----~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 293 (381)
.+.+.+.... -.+.......+++..+...+.+.+||+|++|+++|.++..+++.
T Consensus 250 ----~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 250 ----SVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred ----hHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 1111121111 11223334456788888899999999999999999999999875
No 205
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.40 E-value=0.083 Score=49.29 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccccccccccc
Q 016866 166 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEAN 245 (381)
Q Consensus 166 ~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~ 245 (381)
..-..++..+.+.+.+.+.+++. .+ +.+|+++..+.... .+
T Consensus 293 ~~~~~al~~~~~~~~~~~~~~~~---~~---~~~g~v~~~~~~~~---------------------------------~~ 333 (386)
T COG4175 293 DGPRVALKLLRDEGREYGYAVDR---GN---KFVGVVSIDSLVKA---------------------------------AL 333 (386)
T ss_pred cccchhhhhhhhccchhhHHHhc---cC---ceeeEEeccchhcc---------------------------------cc
Confidence 33455667776666666666643 44 68888888777652 12
Q ss_pred CCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866 246 GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 296 (381)
Q Consensus 246 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~ 296 (381)
..++.++..++++.+.+..+.+... .+||+|++|+++|++++..++.++.
T Consensus 334 ~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 334 IDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence 3357788999999999988887654 6899999999999999999998765
No 206
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.88 E-value=0.56 Score=42.67 Aligned_cols=113 Identities=15% Similarity=0.200 Sum_probs=69.9
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhc--------c-cccccccHHHHHhcC
Q 016866 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA--------Q-IHLDEMNIHQALQLG 317 (381)
Q Consensus 247 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~--------~-~~~~~~~v~~~l~~~ 317 (381)
+-++.+..+. .||+++- +++.|.+ +|+++-+-+..+++.--++..-. . ..+...++.++....
T Consensus 187 kTivfVTHDi--dEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~ 258 (309)
T COG1125 187 KTIVFVTHDI--DEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRG 258 (309)
T ss_pred CEEEEEecCH--HHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccc
Confidence 3456666654 7888664 5788888 79999999998887632211100 0 011122333322211
Q ss_pred CCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 318 QDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 318 ~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
.. . .---........+++..+...+...+||+| ++|+++|.||..+++..
T Consensus 259 ~~----~-----~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 259 EP----A-----DGEPLLEGFVDRDALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLDE 308 (309)
T ss_pred cc----c-----cCCccccchhhHHHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhhh
Confidence 10 0 001122334445588888889999999999 47999999999999875
No 207
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=91.60 E-value=0.42 Score=46.61 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=41.2
Q ss_pred CCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHh
Q 016866 247 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK 296 (381)
Q Consensus 247 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~ 296 (381)
....++++++++.+++..+.+.+.. +||+|+ |+++|+|++.+++..+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 333 AAPTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred ccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence 3567899999999999999887754 888985 99999999999998654
No 208
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=86.43 E-value=1 Score=46.67 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=54.3
Q ss_pred cccccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcC--CCcEEEEEeHHHHHHHHhh
Q 016866 235 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKD 297 (381)
Q Consensus 235 g~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~lvGiis~~Di~~l~~~ 297 (381)
+.+...+.++|.+++..+..+.|..|..+.+....++.+|+||+ +--++|.|.++.+..++..
T Consensus 584 ~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 584 SVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred ceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 34455788999999999999999999999988877999999985 4579999999999887763
No 209
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=72.83 E-value=11 Score=39.43 Aligned_cols=97 Identities=11% Similarity=0.133 Sum_probs=59.3
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhh-hhhcccccccc-----cHHHHHhcCCCCCCCcccCCCcce
Q 016866 259 GSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD-KAYAQIHLDEM-----NIHQALQLGQDANPSLGFNGQRCQ 332 (381)
Q Consensus 259 ~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~-~~~~~~~~~~~-----~v~~~l~~~~~~~~~~~~m~~~~~ 332 (381)
....+.+...+ ..++++|.+|.+++.....++...+.. +......|.+. .++-++. ...++
T Consensus 62 ~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~------------~~~pv 128 (638)
T PRK11388 62 EDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAI------------SGQPV 128 (638)
T ss_pred HHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHh------------cCCce
Confidence 34444555555 788999999999999999988775442 22111222221 1222222 23456
Q ss_pred EEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehH
Q 016866 333 MCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLS 372 (381)
Q Consensus 333 ~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~ 372 (381)
.|....-..+.+. .-.+...||.|+ +|+++|+|+.+
T Consensus 129 ~v~g~EH~~~~~~---~~~c~aaPI~d~-~G~liGvl~l~ 164 (638)
T PRK11388 129 KTMGDQHFKQALH---NWAFCATPVFDS-KGRLTGTIALA 164 (638)
T ss_pred EEecHHHHHHhcc---CceEEeeEEEcC-CCCEEEEEEEE
Confidence 6666665555444 345567899995 79999999743
No 210
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=71.34 E-value=6.6 Score=39.72 Aligned_cols=113 Identities=15% Similarity=0.217 Sum_probs=71.5
Q ss_pred ccccCC--CceEecCCCCHH-HHHHHHHhCCCcEEEEEcCCC--cEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhc
Q 016866 242 GEANGR--PFAMLRPTASLG-SALALLVQADVSSIPIVDDND--SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQL 316 (381)
Q Consensus 242 ~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~g--~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~ 316 (381)
+++|.+ .+..+..+..+. +......+.+++++||.+.+. .+.|.+....+ .+..... .+...++..
T Consensus 207 ~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~-~~~~~~~----~~~~~~v~~---- 277 (498)
T KOG2118|consen 207 GEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL-RLLQVEV----PLEPLPVSE---- 277 (498)
T ss_pred HHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh-hhhcccc----ccccccchh----
Confidence 444543 455566666666 555566789999999998532 22222222221 1111000 111233333
Q ss_pred CCCCCCCcccCCCcceEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHH
Q 016866 317 GQDANPSLGFNGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDV 374 (381)
Q Consensus 317 ~~~~~~~~~~m~~~~~~v~~~~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DI 374 (381)
.+..+...++.++++.+.++.+...+.|.+.|.. . ..-+|++++.|+
T Consensus 278 ---------~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~-~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 278 ---------SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-G-HVDIFVLTLEDL 324 (498)
T ss_pred ---------hhccccccCCCcccHHHHHHHHhhhhceeEEEec-C-CcceeeEeccch
Confidence 4556788999999999999999999998888877 3 567999999987
No 211
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=55.76 E-value=33 Score=35.89 Aligned_cols=101 Identities=10% Similarity=0.026 Sum_probs=57.9
Q ss_pred HHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCccccccccccccccccccCCC
Q 016866 169 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRP 248 (381)
Q Consensus 169 ~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~~~~v~~~~~~~ 248 (381)
.+..+.+...+ ..+++.|. +| .++++....+++..+....-. + ...+....++.-.+|+-. ....
T Consensus 62 ~~l~~~l~~~~-~~~~l~D~---~G---~vL~~~g~~~~~~~~~~~~~~-~-G~~w~E~~~GTnaig~al------~~~~ 126 (638)
T PRK11388 62 EDAWEYMADRE-CALLILDE---TG---CILSRNGDPQTLQQLSALGFN-D-GTYCAEGIIGTNALSLAA------ISGQ 126 (638)
T ss_pred HHHHHHhcCCC-cEEEEEcC---Cc---eEEEEeCCHHHHHHHHHcCCc-c-CCccchhccCcCHHHHHH------hcCC
Confidence 34444554445 77888876 78 899999888887765431110 0 011222223322232221 1234
Q ss_pred ceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEe
Q 016866 249 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 287 (381)
Q Consensus 249 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis 287 (381)
++.+...+...+ .+......+.||.|.+|+++|+++
T Consensus 127 pv~v~g~EH~~~---~~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 127 PVKTMGDQHFKQ---ALHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred ceEEecHHHHHH---hccCceEEeeEEEcCCCCEEEEEE
Confidence 455555543333 344556788999999999999996
No 212
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=54.64 E-value=33 Score=34.78 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=84.6
Q ss_pred HHHHhhhCcccccCCCCccEEEEcCCCCHH-HHHHHHHHcCCCeeecccCCCCcEEEEeehHHHHHHHHHhccCCCCCCh
Q 016866 46 ISSFLSTHTVYELLPDSGKVTALDVNLAVK-QAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 124 (381)
Q Consensus 46 ~~~~l~~~~~~d~~p~s~~vi~ld~~~~v~-~A~~~l~~~~i~~~pV~d~~~~~~vGilt~~D~~~il~~~~~~~~~~~~ 124 (381)
...-|...++.|+|-+...+..++.+..+. +......+.|.+.+||++.+-...+|.+=....+.++... .+.
T Consensus 197 g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~----~~~-- 270 (498)
T KOG2118|consen 197 GALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVE----VPL-- 270 (498)
T ss_pred hhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccc----ccc--
Confidence 334455567778888888999999999988 5556666999999999998765555542122222222100 011
Q ss_pred hHHhhccHHHHHHHHHhhhccccCCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeeh
Q 016866 125 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL 204 (381)
Q Consensus 125 ~~l~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~ 204 (381)
....|.+ .+...+..+++++++.+.++.+.+.+.|.+.|... . .-+++++.
T Consensus 271 ------~~~~v~~----------------~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~~---~----~~~~~~~l 321 (498)
T KOG2118|consen 271 ------EPLPVSE----------------SALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRNG---H----VDIFVLTL 321 (498)
T ss_pred ------ccccchh----------------hhccccccCCCcccHHHHHHHHhhhhceeEEEecC---C----cceeeEec
Confidence 1111111 34456777889999999999998877777777642 2 36788888
Q ss_pred hhHHHHH
Q 016866 205 SDILKCI 211 (381)
Q Consensus 205 ~dil~~l 211 (381)
.++ .-.
T Consensus 322 ~~~-~~~ 327 (498)
T KOG2118|consen 322 EDL-EEV 327 (498)
T ss_pred cch-hhh
Confidence 887 433
No 213
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=53.90 E-value=31 Score=25.23 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCcEEEEEeHHHHHHHHhhhh
Q 016866 270 VSSIPIVDDNDSLLDIYSRSDITALAKDKA 299 (381)
Q Consensus 270 ~~~lpVvd~~g~lvGiis~~Di~~l~~~~~ 299 (381)
...+-++|++|..+|+++.++.+.++....
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~ 41 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKG 41 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcC
Confidence 456788999999999999999999877543
No 214
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=35.19 E-value=77 Score=23.10 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=18.3
Q ss_pred CCEEEEEeCCCCeEEEEEehHHHHHH
Q 016866 352 VRRLVIVEAGSKRVEGIISLSDVFRF 377 (381)
Q Consensus 352 ~~~l~Vvd~~~~~liGiIs~~DIl~~ 377 (381)
...+-|||+ +|..+|+++..+-++.
T Consensus 12 ~~~VrlI~~-~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDE-DGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-T-TS-EEEEEEHHHHHHH
T ss_pred CCEEEEECC-CCcEeceEEHHHHHHH
Confidence 356788994 7999999999998764
No 215
>COG1559 Aminodeoxychorismate lyase [Coenzyme transport and metabolism]
Probab=33.98 E-value=4.4e+02 Score=25.37 Aligned_cols=144 Identities=16% Similarity=0.203 Sum_probs=84.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCcceEEEEecCCCCCCccceEEEeehhhHHHHHhhhcccCCCCCccccCcccccccccc
Q 016866 158 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW 237 (381)
Q Consensus 158 ~~i~v~~~~sl~~a~~~m~~~~i~~lpVvd~d~~~g~~~~~~gils~~dil~~l~~~~~~~~~~~~~~~~~i~~l~ig~~ 237 (381)
..+.|.+.+++.+....+.+++ ++....+.+++.+.... .+.+..|.|
T Consensus 46 ~~v~I~~Gs~~~~i~~~Le~~~---------------------vI~~~~~f~~~~~~~~~-----------~~~lkaG~Y 93 (342)
T COG1559 46 KTVTIPPGSSVSEIGSELEKQK---------------------VIKNARVFRLYLKYNPA-----------AGSLKAGEY 93 (342)
T ss_pred eEEEECCCCCHHHHHHHHHhcC---------------------ccccHHHHHHHHHhcCc-----------cCCcCCcee
Confidence 7889999999999999987754 34445677777654432 122444544
Q ss_pred ccccccccCCCceEecCCCCHHHHHHHHHhCCCcEEEEEcCCCcEEEEEeHHHHHHHHhhhhhcccccccccHHHHHhcC
Q 016866 238 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQALQLG 317 (381)
Q Consensus 238 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~~~~~~~~~~~v~~~l~~~ 317 (381)
.+.+..+..+++++|.+-+....+++ +..=.+.+|+...+................++...-
T Consensus 94 -------------~l~~~ms~~~il~~L~~Gk~~~~~~~-----ipEG~t~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~ 155 (342)
T COG1559 94 -------------RLRPGMSAADILKLLESGKSAQFKVT-----IPEGYTLKQIAKKLAEAPVLDGVLDGLAIAEIAARL 155 (342)
T ss_pred -------------ecCCCCCHHHHHHHHhcCccccceEe-----cCCCccHHHHHHHHhcchhhhhhhhhhhhHHHHHhc
Confidence 47889999999999987654444443 222246777777554332222211122233322211
Q ss_pred CCC-CCCc-c-cCCCcceEEcCCCCHHHHHHHHHhCCC
Q 016866 318 QDA-NPSL-G-FNGQRCQMCLRSDPLHKVMERLANPGV 352 (381)
Q Consensus 318 ~~~-~~~~-~-~m~~~~~~v~~~~tl~~~~~~m~~~~~ 352 (381)
... ..+. | ++ ..-+..+++++-.++++.|.+.-.
T Consensus 156 p~~~~~~~EG~l~-PdTY~~~~g~~~~~Ii~~mi~~~~ 192 (342)
T COG1559 156 PKLDKERLEGYLF-PDTYEFTRGTSAEDIIKRMIKAMD 192 (342)
T ss_pred CCCcCCCCceeec-CceeeeCCCCCHHHHHHHHHHHHH
Confidence 100 0111 2 33 345678899999999999977543
No 216
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=27.06 E-value=66 Score=25.24 Aligned_cols=18 Identities=17% Similarity=0.401 Sum_probs=13.3
Q ss_pred cEEEEEcCCCcEEEEEeH
Q 016866 271 SSIPIVDDNDSLLDIYSR 288 (381)
Q Consensus 271 ~~lpVvd~~g~lvGiis~ 288 (381)
-..||.|.+|+++|+++.
T Consensus 92 ~~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEEE-TTS-EEEEEEE
T ss_pred EEEeeECCCCcEEEEEEE
Confidence 368999889999999863
No 217
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=26.83 E-value=93 Score=31.55 Aligned_cols=37 Identities=30% Similarity=0.566 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 016866 338 DPLHKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFR 376 (381)
Q Consensus 338 ~tl~~~~~~m~~~~~~~l~Vvd~~~~~liGiIs~~DIl~ 376 (381)
..+..+.+.....|-.-++|++ ++++.|+|-+.|+++
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~--~~~~~GVI~LkDivK 449 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE--NGRILGVIYLKDIVK 449 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE--CCEEEEEEEehhhcc
Confidence 4577888888899988999998 489999999999976
No 218
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=23.42 E-value=1.3e+02 Score=25.66 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCcEEEEEeHHHHHHHHhhhh
Q 016866 269 DVSSIPIVDDNDSLLDIYSRSDITALAKDKA 299 (381)
Q Consensus 269 ~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~ 299 (381)
++..+-+++++|.-+|+++..+.+.++.+..
T Consensus 17 r~~evrlIg~~GeqlGiv~~~eAL~lA~e~~ 47 (176)
T COG0290 17 RAREVRLIGEDGEQLGIVSIEEALKLAEEAG 47 (176)
T ss_pred cccEEEEECCCCcEEcceeHHHHHHHHHHcC
Confidence 5667889999999999999999999887543
No 219
>PF14044 NETI: NETI protein
Probab=22.67 E-value=99 Score=21.14 Aligned_cols=21 Identities=10% Similarity=0.262 Sum_probs=18.7
Q ss_pred EEcCCCCHHHHHHHHHhCCCC
Q 016866 333 MCLRSDPLHKVMERLANPGVR 353 (381)
Q Consensus 333 ~v~~~~tl~~~~~~m~~~~~~ 353 (381)
.|.++.|+.+.+++|.+.|..
T Consensus 3 eV~enETI~~CL~RM~~eGY~ 23 (57)
T PF14044_consen 3 EVEENETISDCLARMKKEGYM 23 (57)
T ss_pred eccCCCcHHHHHHHHHHcCCC
Confidence 578899999999999999873
No 220
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=20.79 E-value=1e+02 Score=26.52 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCcEEEEEeHHHHHHHHhhhh
Q 016866 269 DVSSIPIVDDNDSLLDIYSRSDITALAKDKA 299 (381)
Q Consensus 269 ~~~~lpVvd~~g~lvGiis~~Di~~l~~~~~ 299 (381)
+...+-|+|++|..+|+++..+.++++....
T Consensus 18 ~~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~ 48 (177)
T PRK00028 18 RAREVRLIGDDGEQLGIVSTREALELAEEAG 48 (177)
T ss_pred CCCEEEEECCCCcCCCceeHHHHHHHHHHcC
Confidence 3566888999999999999999998776433
Done!