BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016868
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 154 bits (388), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 104/324 (32%), Positives = 146/324 (45%), Gaps = 12/324 (3%)
Query: 63 VVCFGEMLIDFV--PTVSGLSLAESXXXXXXXXXXXXXXXXXXXRLGGSSAFIGKVGADE 120
++CFGE LID + P V RLGG+ F+G +G+D
Sbjct: 7 ILCFGEALIDXLAQPLVKK---GXPRAFLQCAGGAPANVAVAVARLGGAVQFVGXLGSDX 63
Query: 121 FGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELD 180
FG L D E V G+ A+TALAFV L + GER F FYR P+AD+L +
Sbjct: 64 FGDFLFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPAADLLFRVEHFQ 123
Query: 181 LSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNLRLPLWPSADKAREG 240
+ + A IFH S S G ++S+D N R LWP+ +
Sbjct: 124 DASFSDALIFHACSNSXTDADIAEVTFEGXRRAQAAGAIVSFDLNFRPXLWPNGENPASR 183
Query: 241 ILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDF 300
+ AD++K+S EE+ +L +AV+ +L+ +LLLVT+ +YT+
Sbjct: 184 LWKGLSLADVVKLSSEELDYLANTLAADANAVIQQLWQGRAQLLLVTDAAGPVHWYTRTA 243
Query: 301 SGRVQGLKVEAVDATGAGDAFVAGILSQLSTDF-------SLLQKEDQLRDALRFANACG 353
G V +V+ D+ AGDAFV G L + F + + LRFA A G
Sbjct: 244 GGEVPTFRVQVQDSNAAGDAFVGGXLYTFAQQFDDAAALIDFCHDPESIVSTLRFAAAVG 303
Query: 354 ALTVMERGAIPALPTREAVLNAIH 377
AL V +GA A P VL+ I
Sbjct: 304 ALAVTRQGAFTAXPXLSEVLSLIQ 327
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 126/263 (47%), Gaps = 6/263 (2%)
Query: 105 RLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMF 164
RLGG FIG +G D+ G L + ++N V+ +R D +A+ V L +DGER F +
Sbjct: 62 RLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTY 121
Query: 165 YRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDP 224
+P AD + DL + + F++ SI L P G + +D
Sbjct: 122 LVHPGADTYVSPQ--DLPPFRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLFDV 179
Query: 225 NLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLL 284
NLR +W + D+ E I A I K+S +E+ L+ G + DA Y L
Sbjct: 180 NLRSKMWGNTDEIPELIARSAALASICKVSADELCQLS-GASHWQDARYY-LRDLGCDTT 237
Query: 285 LVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRD 344
+++ G DG T + +V+ VD TGAGDAFV G+L LS + L +
Sbjct: 238 IISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLSR--ANCWDHALLAE 295
Query: 345 ALRFANACGALTVMERGAIPALP 367
A+ ANACGA+ V +GA+ ALP
Sbjct: 296 AISNANACGAMAVTAKGAMTALP 318
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 124/263 (47%), Gaps = 6/263 (2%)
Query: 105 RLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMF 164
RLGG FIG +G D+ G L + ++N V+ +R D +A+ V L +DGER F +
Sbjct: 62 RLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTY 121
Query: 165 YRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDP 224
+P AD + DL + + F++ SI L P G + +D
Sbjct: 122 LVHPGADTYVSPQ--DLPPFRQYEWFYFSSIGLTDRPAREACLEGARRXREAGGYVLFDV 179
Query: 225 NLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLL 284
NLR W + D+ E I A I K+S +E+ L+ G + DA Y L
Sbjct: 180 NLRSKXWGNTDEIPELIARSAALASICKVSADELCQLS-GASHWQDARYY-LRDLGCDTT 237
Query: 285 LVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRD 344
+++ G DG T + +V+ VD TGAGDAFV G+L LS + L +
Sbjct: 238 IISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLSR--ANCWDHALLAE 295
Query: 345 ALRFANACGALTVMERGAIPALP 367
A+ ANACGA V +GA ALP
Sbjct: 296 AISNANACGAXAVTAKGAXTALP 318
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 142/312 (45%), Gaps = 12/312 (3%)
Query: 63 VVCFGEMLIDFVPTVSGLSLAESXXXXXXXXXXXXXXXXXXXRLGGSSAFIGKVGADEFG 122
VV GE+L+D + T SL++S RLG A I ++GAD FG
Sbjct: 24 VVSLGEILVDXISTEEVNSLSQSREYTRHFGGSPANIAVNLSRLGKKVALISRLGADAFG 83
Query: 123 YMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLS 182
L D+LK + G++ D RT + +V+ +S +++ YR AD LQE ++
Sbjct: 84 NYLLDVLKGEQIITDGIQQDKERRTTIVYVS-KSTRTPDWLPYRE--ADXYLQEDDIIFE 140
Query: 183 LITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNLRLPLWPSADKAREGIL 242
LI ++K+FH + L +P G ++ +DP R LWP D +
Sbjct: 141 LIKRSKVFHLSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVE 200
Query: 243 SIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSG 302
I AD +K S ++ L + P + V + +K +++T G +G +
Sbjct: 201 EIISRADFVKPSLDDARHLFGPDSP--ENYVKRYLELGVKAVILTLGEEGVIASDGEEII 258
Query: 303 RVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGA 362
R+ +AVD TGAGDAF +G + L ++ ++ +++ N A + GA
Sbjct: 259 RIPAFSEDAVDVTGAGDAFWSGFICGLLDGYT-------VKRSIKLGNGVAAFKIRGVGA 311
Query: 363 IPALPTREAVLN 374
+ +P++E ++
Sbjct: 312 LSPVPSKEDIIK 323
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 112/257 (43%), Gaps = 10/257 (3%)
Query: 105 RLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMF 164
RLG I VG D FG + L + V+ G+ P T AFVT + G+R+F+F
Sbjct: 49 RLGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDFIF 108
Query: 165 YRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDP 224
+A L +D +++ FH SL + G V+S+DP
Sbjct: 109 NIKNAACGKLSAQHVDENILKDCTHFHIXGSSLFSFHXVDAVKKAVTIVKANGGVISFDP 168
Query: 225 NLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLL 284
N+R + R+ + + E DI SE E+ L+ P + + +K +
Sbjct: 169 NIRKEXL-DIPEXRDALHFVLELTDIYXPSEGEVLLLSPHSTP--ERAIAGFLEEGVKEV 225
Query: 285 LVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRD 344
+V G G YY+ + V+ VE VD TGAGD F ++ F D R
Sbjct: 226 IVKRGNQGASYYSANEQFHVESYPVEEVDPTGAGDCFGGAWIACRQLGF------DAHR- 278
Query: 345 ALRFANACGALTVMERG 361
AL++ANACGAL V RG
Sbjct: 279 ALQYANACGALAVTRRG 295
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 133/305 (43%), Gaps = 26/305 (8%)
Query: 62 LVVCFGEMLIDFVPTVSGLSLAESXXXXXXXXXXXXXXXXXXXRLGGSSAFIGKVGADEF 121
L+ GE+LID + G L + RLG S+ I KVG D F
Sbjct: 3 LIASIGELLIDLISVEEG-DLKDVRLFEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPF 61
Query: 122 GYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSA-DMLLQEAELD 180
G L + L + NV+ G+ D T + FV L+ F+ Y + + + L + D
Sbjct: 62 GEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSFLLYDDVAYFNXTLNDINWD 120
Query: 181 LSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNLRLPLWPSADKAREG 240
++ +AKI ++GS+ L P ++ ++D NLRL LW ++
Sbjct: 121 --IVEEAKIVNFGSVILARNPSRETVXKVIKKIKGSSLI-AFDVNLRLDLWRGQEEEXIK 177
Query: 241 IL--SIWETADIIKISEEEISFL-TQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYT 297
+L SI + ADI+K SEEE+ +L QG + L +T GP GCR
Sbjct: 178 VLEESI-KLADIVKASEEEVLYLENQGVEVKGSX-----------LTAITLGPKGCRLIK 225
Query: 298 KDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTV 357
+ V V +D TGAGDAF A +L + L + +FAN AL+
Sbjct: 226 NETVVDVPSYNVNPLDTTGAGDAFXAALLVGILKLKGLDLLK-----LGKFANLVAALST 280
Query: 358 MERGA 362
+RGA
Sbjct: 281 QKRGA 285
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 132/305 (43%), Gaps = 26/305 (8%)
Query: 62 LVVCFGEMLIDFVPTVSGLSLAESXXXXXXXXXXXXXXXXXXXRLGGSSAFIGKVGADEF 121
L+ GE+LID + G L + RLG S+ I KVG D F
Sbjct: 3 LIASIGELLIDLISVEEG-DLKDVRLFEKHPGGAPANVAVGVSRLGVKSSLISKVGNDPF 61
Query: 122 GYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSA-DMLLQEAELD 180
G L + L + NV+ G+ D T + FV L+ F+ Y + + + L + D
Sbjct: 62 GEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLKG-ASPSFLLYDDVAYFNXTLNDINWD 120
Query: 181 LSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNLRLPLWPSADKAREG 240
++ +AKI ++GS+ L P ++ ++D NLRL LW ++
Sbjct: 121 --IVEEAKIVNFGSVILARNPSRETVXKVIKKIKGSSLI-AFDVNLRLDLWRGQEEEXIK 177
Query: 241 IL--SIWETADIIKISEEEISFL-TQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYT 297
+L SI + ADI+K SEEE+ +L QG + L +T GP G R
Sbjct: 178 VLEESI-KLADIVKASEEEVLYLENQGVEVKGSX-----------LTAITLGPKGFRLIK 225
Query: 298 KDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTV 357
+ V V +D TGAGDAF A +L + L + +FAN AL+
Sbjct: 226 NETVVDVPSYNVNPLDTTGAGDAFXAALLVGILKLKGLDLLK-----LGKFANLVAALST 280
Query: 358 MERGA 362
+RGA
Sbjct: 281 QKRGA 285
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 117/275 (42%), Gaps = 24/275 (8%)
Query: 105 RLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVT------LRSDG 158
+ G I KVG DEFGY + L+ V+ + M+ DP A T + F+ L+S
Sbjct: 45 KQGNECGIIAKVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKS-- 102
Query: 159 EREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGV 218
E ++YR SA L ++D + A + H I+L
Sbjct: 103 --ESIYYRKGSAGSKLSPEDVDEEYVKSADLVHSSGITLAISSTAKEAVYKAFEIASN-- 158
Query: 219 VLSYDPNLRLPLWPSADKAREGILSIWETADI-IKISEEEISFLTQGEDPYDDAVVYKLF 277
S+D N+RL LW SA++A+ IL + + I++ + S + GE D A K F
Sbjct: 159 -RSFDTNIRLKLW-SAEEAKREILKLLSKFHLKFLITDTDDSKIILGESDPDKAA--KAF 214
Query: 278 HANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQ 337
+++++ GP G Y G +V D TGAGDA L SL
Sbjct: 215 SDYAEIIVMKLGPKGAIVYYDGKKYYSSGYQVPVEDVTGAGDALGGTFL-------SLYY 267
Query: 338 KEDQLRDALRFANACGALTVMERGAIPALPTREAV 372
K ++ AL +A L VM RG LPT + +
Sbjct: 268 KGFEMEKALDYAIVASTLNVMIRGDQENLPTTKDI 302
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 131/320 (40%), Gaps = 13/320 (4%)
Query: 63 VVCFGEMLIDFVPTVSGLSLAESXXXXXXXXXXXXXXXXXXXRLGGSSAFIGKVGADEFG 122
V+ G + +D P SG+ LA+ R G +SA + +VG D FG
Sbjct: 11 VLAIGRLGVDIYPLQSGVGLADVQSFGKYLGGSAANVSVAAARHGHNSALLSRVGNDPFG 70
Query: 123 -YMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSA-DMLLQEAELD 180
Y+LA+ L+ V+ + D +T + F + + FYR P A D+ ++ A++
Sbjct: 71 EYLLAE-LERLGVDNQYVATDQTFKTPVTFCEIFPPDDFPLYFYREPKAPDLNIESADVS 129
Query: 181 LSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNLRLPLWPSADKAREG 240
L + +A I + EP + +D + R W S ++A +
Sbjct: 130 LDDVREADILWFTLTGFSEEPSRGTHREILTTRANRRHTI-FDLDYRPXFWESPEEATKQ 188
Query: 241 ILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDF 300
+ + + ++EE +P + L ++L +V +GP G TKD
Sbjct: 189 AEWALQHSTVAVGNKEECEIAVGETEP--ERAGRALLERGVELAIVKQGPKGVXAXTKDE 246
Query: 301 SGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMER 360
+ V V+ ++ GAGDAF + L +++ L LRFAN GAL
Sbjct: 247 TVEVPPFFVDVINGLGAGDAFGGALCHGLLSEWP-------LEKVLRFANTAGALVASRL 299
Query: 361 GAIPALPTREAVLNAIHAPV 380
A PT + V +++ V
Sbjct: 300 ECSTAXPTTDEVEASLNQKV 319
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 120/277 (43%), Gaps = 19/277 (6%)
Query: 105 RLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDG-EREFM 163
RLG + ++G D G L ++ + + D +T F +DG +
Sbjct: 70 RLGLKVGWASRLGTDSXGRYLLAAXAAEGIDCSHVVCDATQKTGFQFKGKVTDGSDPPVE 129
Query: 164 FYRNPSADMLLQEAELDLSLITKAKIFH----YGSISLITEPCXXXXXXXXXXXXXXGVV 219
++R SA A++D + + A+ H + +IS T P G
Sbjct: 130 YHRKGSAASHXGVADIDEAWLLSARHLHATGVFPAISATTLPAARKTXDLXRAA---GRS 186
Query: 220 LSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHA 279
+S+DPNLR LW + + R+ I + AD + EE FLT P A Y+ A
Sbjct: 187 VSFDPNLRPTLWATPELXRDAINDLATRADWVLPGXEEGRFLTGETTPEGVARFYRQLGA 246
Query: 280 NLKLLLVTEGPDGCRYYTKDFSGRVQGLKV-EAVDATGAGDAFVAGILSQLSTDFSLLQK 338
KL++V G +G + + SGRV G V E VD GAGD F G++S L + +
Sbjct: 247 --KLVVVKLGAEGAYFDGEAGSGRVAGFPVAEVVDTVGAGDGFAVGVISALLDGLGVPE- 303
Query: 339 EDQLRDALRFANACGALTVMERGAIPALPTREAVLNA 375
A++ GA V G LPTR A LNA
Sbjct: 304 ------AVKRGAWIGARAVQVLGDSEGLPTR-AELNA 333
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 115/311 (36%), Gaps = 22/311 (7%)
Query: 63 VVCFGEMLIDFVPTVSGLSLAESXXXXXXXXXXXXXXXXXXXRLGGSSAFIGKVGADEFG 122
VV GE L+ VP G L RLG F+G+VG DE G
Sbjct: 4 VVTAGEPLVALVPQEPG-HLRGKRLLEVYVGGAEVNVAVALARLGVKVGFVGRVGEDELG 62
Query: 123 YMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLS 182
M+ + L+ V+ R PG T L G+ +YR SA L D
Sbjct: 63 AMVEERLRAEGVDLTHFRRAPGF-TGLYLREYLPLGQGRVFYYRKGSAGSALAPGAFDPD 121
Query: 183 LITKAKIFHYGSISLITEP-CXXXXXXXXXXXXXXGVVLSYDPNLRLPLWPSADKAREGI 241
+ + H I+ P GV +S D N R LW S ++AR +
Sbjct: 122 YLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQTLW-SPEEARGFL 180
Query: 242 LSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFS 301
D++ +SEEE L V L + +++ G G +
Sbjct: 181 ERALPGVDLLFLSEEEAELLF-------GRVEEALRALSAPEVVLKRGAKGAWAFVD--G 231
Query: 302 GRVQG--LKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVME 359
RV+G VEAVD GAGDAF AG L+ + ++ LR AN GA
Sbjct: 232 RRVEGSAFAVEAVDPVGAGDAFAAGYLAGAVWGLPVEER-------LRLANLLGASVAAS 284
Query: 360 RGAIPALPTRE 370
RG P RE
Sbjct: 285 RGDHEGAPYRE 295
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 121/271 (44%), Gaps = 10/271 (3%)
Query: 105 RLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDP-GARTALAFVTLRSDGEREFM 163
+LG + FIGK+ D+ G + + V+ + + D G +T LAF ++S E +
Sbjct: 56 KLGLKAGFIGKIADDQHGRFIESYXRGVGVDTSNLVVDQEGHKTGLAFTEIKSPEECSIL 115
Query: 164 FYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYD 223
YR AD+ L E++ + I ++K+ +L P V + ++
Sbjct: 116 XYRQDVADLYLSPEEVNEAYIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFE 175
Query: 224 PNLRLPLWPSADKAREGILSIWETADIIKISEEEISFL-TQGEDPYDDAVVYKLFHANLK 282
+ R W + ++ + E +DI+ + EE L + E +D + LF + +
Sbjct: 176 LDYRPYSWETPEETAVYYSLVAEQSDIVIGTREEFDVLENRTEKGDNDETIRYLFKHSPE 235
Query: 283 LLLVTEGPDGCRYYTKDFSG-RVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQ 341
L+++ G +G YTK R K + + GAGD++ + L ++L+ +
Sbjct: 236 LIVIKHGVEGSFAYTKAGEAYRGYAYKTKVLKTFGAGDSYASAFL------YALISGKG- 288
Query: 342 LRDALRFANACGALTVMERGAIPALPTREAV 372
+ AL++ +A ++ V + + A P+ E +
Sbjct: 289 IETALKYGSASASIVVSKHSSSDAXPSVEEI 319
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 115/274 (41%), Gaps = 30/274 (10%)
Query: 105 RLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMF 164
R+ + FI K+G D + + K +++ + + A+T AF+T+ ++G+
Sbjct: 52 RMQADTTFITKIGTDGVADFILEDFKVAHIDTSYIIKTAEAKTGQAFITVNAEGQNTIYV 111
Query: 165 YRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGV--VLSY 222
Y + M ++ + K I + + E GV VL+
Sbjct: 112 YGGANMTMTPEDV-----INAKDAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLNP 166
Query: 223 DPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLT----QGEDPYDDAVVYKLFH 278
P LP +LS+ DII +E E L+ E D Y
Sbjct: 167 APAKALP---------NELLSLI---DIIVPNETEAELLSGIKVTNEQSMKDNANY-FLS 213
Query: 279 ANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQK 338
+K +L+T G G + TK+ S ++ KV A+D T AGD F+ +S+L+ +
Sbjct: 214 IGIKTVLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLN------KS 267
Query: 339 EDQLRDALRFANACGALTVMERGAIPALPTREAV 372
+D L DA+ F N +LTV + GA ++P E V
Sbjct: 268 QDNLADAIDFGNKASSLTVQKHGAQASIPLLEEV 301
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 118/271 (43%), Gaps = 26/271 (9%)
Query: 109 SSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVT------LRSDGEREF 162
S + I +VG DEFG + + + ++ + ++ D + T + F+ ++S E
Sbjct: 49 SCSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKS----EL 104
Query: 163 MFYRNPSADMLLQEAELDLSLITKAKIFHYGSISL-ITEPCXXXXXXXXXXXXXXGVVLS 221
++YR SA L +++ + + +++ H I+L I++ S
Sbjct: 105 VYYRKGSAGSRLSPEDINENYVRNSRLVHSTGITLAISDNAKEAVIKAFELAKSR----S 160
Query: 222 YDPNLRLPLWPSADKAREGILSIWETADI-IKISE-EEISFLTQGEDPYDDAVVYKLFHA 279
D N+R LW S +KA+E ILSI + DI + I++ ++ L DP D K
Sbjct: 161 LDTNIRPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKILLDVTDP--DEAYRKYKEL 218
Query: 280 NLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKE 339
+K+LL G G Y + KV D TGAGDA +AG L LQ +
Sbjct: 219 GVKVLLYKLGSKGAIAYKDNVKAFKDAYKVPVEDPTGAGDA-MAGTFVSL-----YLQGK 272
Query: 340 DQLRDALRFANACGALTVMERGAIPALPTRE 370
D + +L A L + RG PT E
Sbjct: 273 D-IEYSLAHGIAASTLVITVRGDNELTPTLE 302
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 119/271 (43%), Gaps = 20/271 (7%)
Query: 105 RLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMF 164
RLG +A ++G D G + D ++ N++ ++ D T++ + DGER F+
Sbjct: 55 RLGHRTALXSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVT 114
Query: 165 YRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXG--VVLSY 222
RN S L ++D + ++AK+ SI P ++
Sbjct: 115 NRNGSL-WKLNIDDVDFARFSQAKLLSLASI--FNSPLLDGKALTEIFTQAKARQXIICA 171
Query: 223 DPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLK 282
D + P ++ + I D + + E LT G++ D+ + +K
Sbjct: 172 DX-----IKPRLNETLDDICEALSYVDYLFPNFAEAKLLT-GKETLDE-IADCFLACGVK 224
Query: 283 LLLVTEGPDGCRYYTKDFSGRVQGLK-VEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQ 341
+++ G DGC D + +V + + A+D GAGD F +G ++ +LL+ ++
Sbjct: 225 TVVIKTGKDGCFIKRGDXTXKVPAVAGITAIDTIGAGDNFASGFIA------ALLEGKN- 277
Query: 342 LRDALRFANACGALTVMERGAIPALPTREAV 372
LR+ RFANA A++V+ GA + R+ V
Sbjct: 278 LRECARFANATAAISVLSVGATTGVKNRKLV 308
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 9/224 (4%)
Query: 111 AFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSA 170
++ +G D + + ++G G+R PG L +TL GER F ++R SA
Sbjct: 70 SYFSAIGDDALSQQMRAAMSAAGIDGGGLRVIPGRTVGLYLITL-EQGERSFAYWRGQSA 128
Query: 171 DM-LLQEAELDLSLITKAKIFHYGSISL-ITEPCXXXX-XXXXXXXXXXGVVLSYDPNLR 227
L +A+ + + +A + ++ I+L I + C G +++DPNLR
Sbjct: 129 ARELAGDADALAAAMARADVVYFSGITLAILDQCGRATLLRALAQARATGRTIAFDPNLR 188
Query: 228 LPLWPSADKAREGILSIWETADIIKIS-EEEISFLTQGEDPYDDAVVYKLFHANLKLLLV 286
LW + E I+ +DI S E+E ++ D DA + A ++ ++V
Sbjct: 189 PRLWAGTGEMTETIMQGAAVSDIALPSFEDEAAWFG---DAGPDATADRYARAGVRSVVV 245
Query: 287 TEGPDGCRYYTKDFSGR-VQGLKVEAVDATGAGDAFVAGILSQL 329
GP + GR + VD T AGD+F AG+L +
Sbjct: 246 KNGPHAVHFLQDGRRGRVPVPPVAQVVDTTAAGDSFNAGLLDSV 289
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 17/228 (7%)
Query: 112 FIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSAD 171
++ +G D F D NV+ + + L ++ S GER F ++RN +A
Sbjct: 52 YVTALGTDSFSQQXLDAWHGENVDTSLTQRXENRLPGLYYIETDSTGERTFYYWRNEAAA 111
Query: 172 MLLQEAELDLSLITKAKIFHY-----GSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNL 226
+E ++ + F Y S+++++ G + +D N
Sbjct: 112 KFWLASEQSAAICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNY 171
Query: 227 RLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLV 286
R LW S ++ ++ E DI ++ ++ L G+ P +D V+ + +A +K ++V
Sbjct: 172 RPRLWASKEETQQVYQQXLECTDIAFLTLDDEDAL-WGQQPVED-VIARTHNAGVKEVVV 229
Query: 287 TEGPDGCRYYTKDFSGR-------VQGLKVEAVDATGAGDAFVAGILS 327
G D C +G V+ K + +D T AGD+F AG L+
Sbjct: 230 KRGADSCLV---SIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYLA 274
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 111/271 (40%), Gaps = 24/271 (8%)
Query: 105 RLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMF 164
+ G S + VG DE G + ++ KE + R D T VTL +G +
Sbjct: 36 QFGFDSRVVSAVGNDELGDEIXEVFKEKQLKNQIERVD--YPTGTVQVTLDDEGVPCYEI 93
Query: 165 YRNPSADMLLQEAELD-LSLITKAKIFHYGSISLITEPCXXXXXXXXXXX-XXXGVVLSY 222
+ D + EL L+L T+A F GS++ E G + +
Sbjct: 94 KEGVAWDNIPFTDELKRLALNTRAVCF--GSLAQRNEVSRATINRFLDTXPDIDGQLKIF 151
Query: 223 DPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQ-----GEDPYDDAVVYKLF 277
D NLR + +E + ++ +I+KI++EE+ +++ G D D + L
Sbjct: 152 DINLRQDFY-----TKEVLRESFKRCNILKINDEELVTISRXFGYPGIDLQDKCWIL-LA 205
Query: 278 HANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQ 337
NLK L++T G +G +T + KV D GAGD+F A + + S
Sbjct: 206 KYNLKXLILTCGINGSYVFTPGVVSFQETPKVPVADTVGAGDSFTAAFCASILNGKS--- 262
Query: 338 KEDQLRDALRFANACGALTVMERGAIPALPT 368
+ +A + A A + GA P LP
Sbjct: 263 ----VPEAHKLAVEVSAYVCTQSGAXPELPV 289
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 115/275 (41%), Gaps = 32/275 (11%)
Query: 105 RLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMF 164
RLG ++ + KVG D FG + LK+N+++ A T A + + ++G+ +
Sbjct: 73 RLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVI 132
Query: 165 YRNPSADMLLQEAELDLS--LITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSY 222
A++LL +L + +I++AK+ + E GV +
Sbjct: 133 V--AGANLLLNTEDLRAAANVISRAKV-----MVCQLEITPATSLEALTMARRSGVKTLF 185
Query: 223 DPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLT-----QGEDPYDDAVVYKLF 277
+P P D + +D+ +E E LT D + A+V L
Sbjct: 186 NP---APAIADLDP------QFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALV--LL 234
Query: 278 HANLKLLLVTEGPDGCRYY--TKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSL 335
+++++T G +GC T+ + KV+AVD TGAGD+FV + L+ +L
Sbjct: 235 KRGCQVVIITLGAEGCVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYPNL 294
Query: 336 LQKEDQLRDALRFANACGALTVMERGAIPALPTRE 370
L D L +N A++V G + P ++
Sbjct: 295 -----SLEDMLNRSNFIAAVSVQAAGTQSSYPYKK 324
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 108/281 (38%), Gaps = 53/281 (18%)
Query: 105 RLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMF 164
R GG ++ G VG DE G + L E+ ++ +G PGAR+AL+ + + + GER +
Sbjct: 78 RXGGRASLWGAVGDDETGTRILRDLSESGIDTSGXTVAPGARSALSTIIIDNRGERLIV- 136
Query: 165 YRNPSADMLLQEAEL-----DLSLITKAKI-FHYGSISLITEPCXXXXXXXXXXXXXXGV 218
P D L E + D++L + + ++L
Sbjct: 137 ---PFYDHRLHEKKRACTPEDIALFDAVLVDVRWPELALD-------------------- 173
Query: 219 VLSYDPNLRLPLWPSADKAR-EGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLF 277
VL+ L P D A E + + A I SE + LT E D +
Sbjct: 174 VLTVARALGKPAILDGDVAPVETLEGLAPAATHIVFSEPAATRLTGLETVKD---XLPVL 230
Query: 278 HANL--KLLLVTEGPDGCRYYTKD-----FSGRVQGLKVEAVDATGAGDAFVAGILSQLS 330
HA + VT GP GC + D F Q VEAVD AGD F
Sbjct: 231 HARYPQTFIAVTAGPAGCWWTEADDPTVHFQTTXQ---VEAVDTLAAGDIF--------H 279
Query: 331 TDFSLLQKED-QLRDALRFANACGALTVMERGAIPALPTRE 370
F+L E Q R A+R ++ AL G PTRE
Sbjct: 280 GTFALAXAEGXQSRAAVRLSSVAAALKCTVFGGRIGAPTRE 320
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 115/273 (42%), Gaps = 29/273 (10%)
Query: 105 RLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMF 164
R G + AFI G D G + L +N++ + G T +A + + +GE
Sbjct: 53 RSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGI 112
Query: 165 YRNPSADM--LLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSY 222
+ +A + L EA+ + +I + ++ + E +++
Sbjct: 113 HAGANAALSPALVEAQ-------RERIANASALLMQLESPLESVMAAAKIAHQNKTIVAL 165
Query: 223 DPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLT--QGEDPYDDAVVYKLFHAN 280
+P ARE + DII +E E LT + E+ D A ++ H
Sbjct: 166 NP----------APARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEK 215
Query: 281 -LKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKE 339
++ +L+T G G RV G +V+AVD AGD F +++ L +E
Sbjct: 216 GIRTVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITAL-------LEE 268
Query: 340 DQLRDALRFANACGALTVMERGAIPALPTREAV 372
L +A+RFA+A A+ V +GA P++P RE +
Sbjct: 269 KPLPEAIRFAHAAAAIAVTRKGAQPSVPWREEI 301
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 217 GVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKL 276
GV +DP LPL+ A R SI E A I +++ E + +D + ++
Sbjct: 168 GVPFIFDPGQGLPLFDGATLRR----SI-ELATYIAVNDYEAKLVCDKTGWSEDEIASRV 222
Query: 277 FHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAV-DATGAGDAFVAGILSQLSTDFSL 335
+ L++T G G +D + ++ ++ E V D TG GDAF G+L + F
Sbjct: 223 -----QALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDW 277
Query: 336 LQKEDQLRDALRFANACGALTVMERGAIPALPTREAV 372
A R A+ GAL + +G PTR +
Sbjct: 278 AT-------AGRLASLMGALKIAHQGPQTYAPTRAEI 307
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 18/157 (11%)
Query: 217 GVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKL 276
GV +DP LPL+ A R E A I +++ E + +D + ++
Sbjct: 160 GVPFIFDPGQGLPLFDGATLRRS-----IELATYIAVNDYEAKLVCDKTGWSEDEIASRV 214
Query: 277 FHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAV-DATGAGDAFVAGILSQLSTDFSL 335
+ L++T G G +D + ++ ++ E V D TG GDAF G+L + F
Sbjct: 215 -----QALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDW 269
Query: 336 LQKEDQLRDALRFANACGALTVMERGAIPALPTREAV 372
A R A+ GAL + +G PTR +
Sbjct: 270 AT-------AGRLASLMGALKIAHQGPQTYAPTRAEI 299
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 108/264 (40%), Gaps = 33/264 (12%)
Query: 112 FIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSAD 171
F+ +G D++ +L + ++ + G P R AF+ + G+ + + P A+
Sbjct: 71 FVTCIGNDDYSDLLIENYEKLGITGYIRVSLPTGR---AFIEVDKTGQNRIIIF--PGAN 125
Query: 172 MLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDPNLRLPLW 231
L++ +D + ++++ I L+ + G+V+ +DP
Sbjct: 126 AELKKELIDWNTLSESDI-------LLLQNEIPFETTLECAKRFNGIVI-FDP------A 171
Query: 232 PSADKAREGILSIWETADIIKISEEEISFLTQ---GEDPYDDAVVYKLFHANLKLLLVTE 288
P+ E I++ D + +E+EI L++ GE + K +K ++V
Sbjct: 172 PAQGINEE----IFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKL 227
Query: 289 GPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRF 348
G G K+ KV+AVD T AGD F LS + +A+ F
Sbjct: 228 GDKGVLLVNKNEKKHFPTFKVKAVDTTAAGDVFNGAFAVALS-------EGKNPEEAVIF 280
Query: 349 ANACGALTVMERGAIPALPTREAV 372
A A++V GA ++P RE V
Sbjct: 281 GTAAAAISVTRLGAQSSIPAREEV 304
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 26/160 (16%)
Query: 219 VLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEI----SFLTQGEDPYDDAVVY 274
++S+DP LP + ++E +L I E + + +++ E + L D Y + V
Sbjct: 156 LVSFDPGQDLPQY-----SKEMLLEIIEHTNFLFMNKHEFERASNLLNFEIDDYLERV-- 208
Query: 275 KLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKV-EAVDATGAGDAFVAGILSQLSTDF 333
L+VT+G G YTKD + +K + +D TGAGD++ AG LS +
Sbjct: 209 -------DALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGFLSAYVKGY 261
Query: 334 SLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAVL 373
L A + V +G LPT + V+
Sbjct: 262 -------DLEKCGLIGAATASFVVEAKGCQTNLPTWDKVV 294
>pdb|4E3A|A Chain A, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
pdb|4E3A|B Chain B, Crystal Structure Of Probable Sugar Kinase Protein From
Rhizobium Etli Cfn 42
Length = 352
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 42/248 (16%)
Query: 106 LGGSSAFIGKVGADEFGYMLADILKENNVN------GAGMRFDPGARTALAFVTLRSDGE 159
LGG +A+ G V AD+ G + ++ V+ GA F P AR+ + FVT DGE
Sbjct: 93 LGGKAAYFGNVAADQLGDIFTHDIRAQGVHYQTKPKGA---FPPTARSXI-FVT--EDGE 146
Query: 160 REFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVV 219
R Y ++ ++ E D ++ AK+ ++ + +P +
Sbjct: 147 RSXNTYLGACVELGPEDVEAD--VVADAKVTYFE--GYLWDPPRAKEAILDCAR----IA 198
Query: 220 LSYDPNLRLPLWPS--ADKAREGILSIWETA--DIIKISEEEISFLTQGEDPYDDAVVYK 275
+ L S D+ R L + + DI+ + +E L Q +D +++A+
Sbjct: 199 HQHGREXSXTLSDSFCVDRYRGEFLDLXRSGKVDIVFANRQEALSLYQTDD-FEEAL--N 255
Query: 276 LFHANLKLLLVTEGPDGC-------RYYTKDFSGRVQGLKV-EAVDATGAGDAFVAGILS 327
A+ K+ VT +G RYY V +++ E VD TGAGD F +G L
Sbjct: 256 RIAADCKIAAVTXSENGAVILKGRERYY-------VNAIRIREVVDTTGAGDLFASGFLY 308
Query: 328 QLSTDFSL 335
+ SL
Sbjct: 309 GYTQGRSL 316
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 96/242 (39%), Gaps = 29/242 (11%)
Query: 109 SSAFIGKVGADEFGYMLADILKENNVNGAGM-RFDPGARTALAFVTLRSDGEREFMFYRN 167
++ F G +G D+FG +L E +V+ + + T A +T G+ +
Sbjct: 83 AATFFGCIGIDKFGEILKRKAAEAHVDAHYYEQNEQPTGTCAACIT----GDNRSLIANL 138
Query: 168 PSADMLLQEAELDLS----LITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYD 223
+A+ +E LDL L+ KA++ + L P L
Sbjct: 139 AAANCYKKEKHLDLEKNWMLVEKARVCYIAGFFLTVSPESVLKVAHHASENNRIFTL--- 195
Query: 224 PNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLT--QGEDPYDDAVVYKLFHA-- 279
NL P K E ++ + DI+ +E E + QG + D + K A
Sbjct: 196 -NLSAPFISQFYK--ESLMKVMPYVDILFGNETEAATFAREQGFETKDIKEIAKKTQALP 252
Query: 280 -----NLKLLLVTEGPDGCRYYTKD----FSGRVQGLKVEAVDATGAGDAFVAGILSQLS 330
++++ T+G D T+ F+ Q K E +D GAGDAFV G LSQL
Sbjct: 253 KMNSKRQRIVIFTQGRDDTIMATESEVTAFAVLDQDQK-EIIDTNGAGDAFVGGFLSQLV 311
Query: 331 TD 332
+D
Sbjct: 312 SD 313
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 93/235 (39%), Gaps = 16/235 (6%)
Query: 106 LGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFY 165
LGG +A+ GKV D+ G + ++ V+ D TA + + + DGER Y
Sbjct: 73 LGGRAAYFGKVADDQLGEIFTHDIRAQGVHFQTKPLDGHPPTARSXIFVTEDGERSXNTY 132
Query: 166 RNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCXXXXXXXXXXXXXXGVVLSYDPN 225
++ ++ E D+ +K F + +P + ++
Sbjct: 133 LGACVELGPEDVEDDVVAQSKVTYFE----GYLWDPPRAKDAIREAAR----IAHAHGRE 184
Query: 226 LRLPLWPS--ADKAREGILSIWE--TADIIKISEEEISFLTQGEDPYDDAVVYKLFHANL 281
L S + R L + T DI+ + +E L + ED +D A+ +L +
Sbjct: 185 TAXTLSDSFCVHRYRSEFLELXRSGTVDIVFANRQEALALYETED-FDRAL--ELLARDC 241
Query: 282 KLLLVTEGPDGCRYYTKDFSGRVQGLKVE-AVDATGAGDAFVAGILSQLSTDFSL 335
KL VT +G RV +E VD TGAGD + AG L ++ SL
Sbjct: 242 KLAAVTLSEEGSVVVRGAERVRVGASVLEQVVDTTGAGDLYAAGFLFGYTSGRSL 296
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 284 LLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLR 343
++V+ G DG Y K+ S + + + V+ G+GD+ VAG+++ +++ S +
Sbjct: 214 VIVSLGGDGAIYIDKEISIKAVNPQGKVVNTVGSGDSTVAGMVAGIASGLS-------IE 266
Query: 344 DALRFANACGALTVMERGAIPALPTREAV 372
A + A ACG T + L TR+A+
Sbjct: 267 KAFQQAVACGTATAFDED----LATRDAI 291
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 22/75 (29%)
Query: 256 EEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEA-VDA 314
+ I +TQG DP +LL+ G D R + VQ L E VD
Sbjct: 274 KRIVIITQGSDP---------------VLLIEAGTDNVREFP------VQKLAPEQMVDT 312
Query: 315 TGAGDAFVAGILSQL 329
GAGDAFV G L+QL
Sbjct: 313 NGAGDAFVGGFLAQL 327
>pdb|2ABQ|A Chain A, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
pdb|2ABQ|B Chain B, Crystal Structure Of Fructose-1-Phosphate Kinase From
Bacillus Halodurans
Length = 306
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 269 DDAV--VYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGIL 326
+DA+ V +L ++ +LV+ DG + + + V E ++ GAGD+ VAG L
Sbjct: 197 EDAIPHVQRLIGEGIESILVSFAGDGALFASAEGXFHVNVPSGEVRNSVGAGDSVVAGFL 256
Query: 327 SQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAV 372
+ LQ+ L DA+ FA A G+ T G TRE V
Sbjct: 257 -------AALQEGKSLEDAVPFAVAAGSATAFSDG----FCTREEV 291
>pdb|3KTN|A Chain A, Crystal Structure Of A Putative 2-Keto-3-Deoxygluconate
Kinase From Enterococcus Faecalis
Length = 346
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 296 YTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGAL 355
YT++ + + + +D GAGDA+ AGIL S ++S L A+ FA G L
Sbjct: 257 YTQNEYQQSEKRPLLNLDRIGAGDAYAAGILYGYSQNWS-------LEKAVTFATVNGVL 309
Query: 356 TVMERGAIPALPTREAVLNAIHAP 379
+G IP L T + V + + P
Sbjct: 310 AHTIQGDIP-LTTVKQVNHVLEHP 332
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 281 LKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKED 340
+K + ++ DG Y G+++ +V+ + TGAGD+FVAG+ + K
Sbjct: 219 IKKVFISLDADGIFYNDGVSCGKIKATEVDVKNVTGAGDSFVAGL------GYGYXNKX- 271
Query: 341 QLRDALRFANACGALTVMERGAI 363
+ D ++FA +T+ I
Sbjct: 272 PIEDIVKFAXTXSNITISHEETI 294
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 14/122 (11%)
Query: 242 LSIWETADIIKISEEE-ISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDG--CRYYTK 298
L++ D IK +E+E I+ L + + ++ + + + L+V+ G G C + K
Sbjct: 177 LAVEMGVDFIKPNEDEVIAILDEKTNSLEENI--RTLAEKIPYLVVSLGAKGSICAHNGK 234
Query: 299 DFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVM 358
+ +V KV+ + TGAGD FV ++ L+ + + + L+ A C A VM
Sbjct: 235 LY--QVIPPKVQERNDTGAGDVFVGAFIAGLAMNMPITE-------TLKVATGCSASAVM 285
Query: 359 ER 360
++
Sbjct: 286 QQ 287
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 284 LLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLR 343
++T G G RY D V V VD GAGD F AG+L+ + + ++LR
Sbjct: 213 FVITLGVRGARYVGADGVFEVPAPTVTPVDTAGAGDVF-AGVLAA-NWPRNPGSPAERLR 270
Query: 344 DALRFANACGALTVMERG 361
ALR A A GAL + G
Sbjct: 271 -ALRRACAAGALATLVSG 287
>pdb|2PKF|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKF|B Chain B, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKK|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With 2- Fluro Adenosine
pdb|2PKN|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Amp-Pcp (Non-Hydrolyzable Atp Analog)
pdb|2PKM|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Adenosine
Length = 334
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 94/244 (38%), Gaps = 31/244 (12%)
Query: 106 LGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFY 165
LGG A +G GAD Y D LK VN + A TA T D + FY
Sbjct: 70 LGGEVALVGAAGADFADYR--DWLKARGVNCDHVLISETAHTARFTCTTDVDMAQIASFY 127
Query: 166 RNPSADMLLQEAELDLSLITKAKIFHYGS-----ISLITEPCXXXXXXXXXXXXXXGVVL 220
++ + +S I K ++ G+ + L TE C G+
Sbjct: 128 PGAMSEARNIKLADVVSAIGKPELVIIGANDPEAMFLHTEECRKL-----------GLAF 176
Query: 221 SYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHAN 280
+ DP+ +L A + E I + A + ++ E L + + +A V A
Sbjct: 177 AADPSQQL-----ARLSGEEIRRLVNGAAYLFTNDYEWDLLLS-KTGWSEADVM----AQ 226
Query: 281 LKLLLVTEGPDGCRYYTKDFSGRVQGL--KVEAVDATGAGDAFVAGILSQLSTDFSLLQK 338
+ L + T GP G D + G+ + D TG GDAF AG L+ S L++
Sbjct: 227 IDLRVTTLGPKGVDLVEPDGTTIHVGVVPETSQTDPTGVGDAFRAGFLTGRSAGLG-LER 285
Query: 339 EDQL 342
QL
Sbjct: 286 SAQL 289
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 242 LSIWETADIIKISEEE-ISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDG--CRYYTK 298
L++ D IK +E+E I+ L + + ++ + + + L+V+ G G C + K
Sbjct: 177 LAVEXGVDFIKPNEDEVIAILDEKTNSLEENI--RTLAEKIPYLVVSLGAKGSICAHNGK 234
Query: 299 DFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVM 358
+ +V KV+ + TGAGD FV ++ L+ + + + L+ A C A V
Sbjct: 235 LY--QVIPPKVQERNDTGAGDVFVGAFIAGLAXNXPITE-------TLKVATGCSASKVX 285
Query: 359 ER 360
++
Sbjct: 286 QQ 287
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 244 IWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGR 303
+W DI ++E E L PY +K L++T+G G +
Sbjct: 174 LWPLIDIAVVNESEAELL----QPY-----------GVKTLVITQGAAGAWLVQEGQRQF 218
Query: 304 VQGLKVEAVDATGAGDAF 321
+ EA+D TGAGD F
Sbjct: 219 CPAVPAEALDTTGAGDTF 236
>pdb|4GM6|A Chain A, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|B Chain B, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|C Chain C, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|D Chain D, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|E Chain E, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|F Chain F, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
Length = 351
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 66/319 (20%), Positives = 117/319 (36%), Gaps = 49/319 (15%)
Query: 63 VVCFGEMLIDFVPTVSGLSLAESXXXXXXXXXXXXXXXXXXXRLGGSSAFIGKVGADEFG 122
VV GE+L+ + T G+ +++ +LG + V A+ G
Sbjct: 27 VVTIGELLMR-LSTQQGIPFSQTTALDIHIGGAEANVAVNLSKLGHPTRIATVVPANPIG 85
Query: 123 YMLADILKENNVNGAGMRFDPGAR---------TALAFVTLRSDGEREFMFYRNPSADML 173
M + L + V+ A + + G R TAL ++ D + F R+ S D
Sbjct: 86 KMAVEHLWRHQVDTAFV-VEAGDRLGTYYLESGTALKAPSVVYDRQHS-SFARHKSMDWD 143
Query: 174 LQEAELDLSLITKAKIFHYGSISL-ITEPCXXXXXXXXXXXXXXGVVLSYDPNLRLPLWP 232
L E L+ ++ H I++ ++ G+ +S+D N R LW
Sbjct: 144 LSE------LLKGIRVLHVSGITIALSTFWLEMVVKIIREAKRNGIKISFDMNYRAKLWE 197
Query: 233 --SADKAREGILSI--------WETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLK 282
+A +A + +L + + +IS E + D Y + +LF+A +
Sbjct: 198 LEAAKRAYQQLLPLVDYCSAGQMDAVAFFEISSETTDYYQAMHDKYPNI---ELFYATKR 254
Query: 283 LLLVTEGP--DGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVA----GILSQLSTDFSLL 336
++ G + + + VD G GDA+ A GILS+ D
Sbjct: 255 TVISASHHLLQGHLWTQGECWESEEYAIYPIVDRVGGGDAYTAAVLHGILSEWRPD---- 310
Query: 337 QKEDQLRDALRFANACGAL 355
+ ++FA A L
Sbjct: 311 -------ETVKFATAAAGL 322
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 312 VDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERG 361
VD GAGDAFV G L LS + ++ + NAC + G
Sbjct: 311 VDTNGAGDAFVGGFLYALS-------QGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|2AWD|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis
pdb|2AWD|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis
pdb|2F02|A Chain A, Crystal Structure Of Lacc From Enterococcus Faecalis In
Complex With Atp
pdb|2F02|B Chain B, Crystal Structure Of Lacc From Enterococcus Faecalis In
Complex With Atp
Length = 323
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 233 SADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAV------VYKLFHANLKLLLV 286
S D R+ + W+ +IK + EE+ L G+D ++ + + K A ++ +++
Sbjct: 167 SGDSLRQVLQGPWKPY-LIKPNLEELEGLL-GQDFSENPLAAVQTALTKPXFAGIEWIVI 224
Query: 287 TEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTD 332
+ G DG D RV+ ++A + G+GDA +AG+ L+ D
Sbjct: 225 SLGKDGAIAKHHDQFYRVKIPTIQAKNPVGSGDATIAGLAYGLAKD 270
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 312 VDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERG 361
VD GAGDAFV G L LS + ++ + NAC + G
Sbjct: 331 VDTNGAGDAFVGGFLYALS-------QGKTVKQCIMCGNACAQDVIQHVG 373
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
Length = 330
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 271 AVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLS 330
AV LF ++ ++V+ G G RV + ++ G+GD+ VAGI S
Sbjct: 227 AVSQPLFEG-IEWIIVSLGAQGAFAKHNHTFYRVNIPTISVLNPVGSGDSTVAGITS--- 282
Query: 331 TDFSLLQKEDQLRDALRFANACGALTVME 359
++L E+ D L+ AN G L E
Sbjct: 283 ---AILNHEND-HDLLKKANTLGXLNAQE 307
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 312 VDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERG 361
VD GAGDAFV G L LS + ++ + NAC + G
Sbjct: 311 VDTNGAGDAFVGGFLYGLS-------QGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2Q5R|A Chain A, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|B Chain B, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|C Chain C, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|D Chain D, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
Length = 330
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 271 AVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLS 330
AV LF ++ ++V+ G G RV + ++ G+GD+ VAGI S
Sbjct: 227 AVSQPLFEG-IEWIIVSLGAQGAFAKHNHTFYRVNIPTISVLNPVGSGDSTVAGITS--- 282
Query: 331 TDFSLLQKEDQLRDALRFANACGALTVME 359
++L E+ D L+ AN G L E
Sbjct: 283 ---AILNHEND-HDLLKKANTLGXLNAQE 307
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 312 VDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERG 361
VD GAGDAFV G L LS + ++ + NAC + G
Sbjct: 311 VDTNGAGDAFVGGFLYGLS-------QGKTVKQCIMCGNACAQDVIQHVG 353
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 282 KLLLVTEGPDGCRYYTKDFSGRVQGLKVEAV-DATGAGDAFVAGILSQLSTDFSLLQKED 340
K L++ +G G +T + +E++ D TGAGD F G + L+ + E
Sbjct: 201 KTLIIKKGEHGALLFTDNGIFAAPAFPLESIYDPTGAGDTFAGGFIGHLARCGN--TSEA 258
Query: 341 QLRDALRFANACGALTVMERG 361
+ R A+ + +A + V + G
Sbjct: 259 EXRKAVLYGSAXASFCVEQFG 279
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 246 ETADIIKISEEEISFLTQGEDPYDD 270
+T+ K EE+I++ QGEDPY D
Sbjct: 289 DTSQFDKYPEEDINYGVQGEDPYAD 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,637,020
Number of Sequences: 62578
Number of extensions: 357572
Number of successful extensions: 796
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 707
Number of HSP's gapped (non-prelim): 65
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)