Query 016868
Match_columns 381
No_of_seqs 262 out of 1747
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:32:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016868.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016868hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02323 probable fructokinase 100.0 1.3E-52 2.8E-57 395.9 36.9 322 58-380 8-329 (330)
2 PLN02543 pfkB-type carbohydrat 100.0 9.3E-51 2E-55 393.5 34.8 319 60-379 125-490 (496)
3 PLN02967 kinase 100.0 4.2E-50 9.2E-55 392.0 35.3 314 61-375 197-544 (581)
4 PLN02341 pfkB-type carbohydrat 100.0 2.3E-49 4.9E-54 387.3 36.4 311 58-379 70-410 (470)
5 KOG2855 Ribokinase [Carbohydra 100.0 4E-49 8.7E-54 353.9 28.3 315 59-379 8-327 (330)
6 PRK09434 aminoimidazole ribosi 100.0 8.5E-48 1.8E-52 359.1 33.6 302 60-373 2-304 (304)
7 PRK11142 ribokinase; Provision 100.0 2.4E-47 5.1E-52 356.5 33.0 293 61-377 3-304 (306)
8 PTZ00292 ribokinase; Provision 100.0 7.6E-47 1.6E-51 356.0 34.1 301 58-377 13-325 (326)
9 PLN02813 pfkB-type carbohydrat 100.0 1.2E-46 2.5E-51 363.2 34.1 306 58-378 67-407 (426)
10 cd01167 bac_FRK Fructokinases 100.0 1.7E-46 3.7E-51 348.9 32.1 294 62-362 1-294 (295)
11 COG0524 RbsK Sugar kinases, ri 100.0 1.2E-45 2.5E-50 345.8 33.8 302 62-379 1-310 (311)
12 cd01168 adenosine_kinase Adeno 100.0 4.2E-46 9E-51 348.9 29.7 288 61-364 2-311 (312)
13 PRK15074 inosine/guanosine kin 100.0 1.2E-45 2.6E-50 353.8 31.9 330 27-372 3-426 (434)
14 cd01166 KdgK 2-keto-3-deoxyglu 100.0 4E-45 8.6E-50 339.5 32.9 291 62-362 1-293 (294)
15 cd01944 YegV_kinase_like YegV- 100.0 3.6E-45 7.9E-50 339.0 31.9 283 62-361 1-289 (289)
16 cd01174 ribokinase Ribokinase 100.0 4.3E-45 9.2E-50 339.0 32.0 283 62-368 1-292 (292)
17 PRK09850 pseudouridine kinase; 100.0 8E-45 1.7E-49 340.2 31.5 298 58-378 2-308 (313)
18 PRK09954 putative kinase; Prov 100.0 5.1E-45 1.1E-49 348.0 29.3 314 33-378 39-361 (362)
19 PTZ00247 adenosine kinase; Pro 100.0 4.1E-44 8.8E-49 339.7 28.3 290 58-364 3-336 (345)
20 cd01945 ribokinase_group_B Rib 100.0 8.7E-44 1.9E-48 328.9 29.8 279 62-368 1-284 (284)
21 PF00294 PfkB: pfkB family car 100.0 2.8E-44 6.1E-49 334.8 23.8 290 61-368 2-300 (301)
22 PLN02379 pfkB-type carbohydrat 100.0 5.1E-43 1.1E-47 332.8 32.5 297 60-375 19-354 (367)
23 cd01942 ribokinase_group_A Rib 100.0 3.8E-43 8.2E-48 323.8 29.3 270 62-362 1-278 (279)
24 TIGR02152 D_ribokin_bact ribok 100.0 3.5E-42 7.6E-47 319.6 29.4 284 67-373 1-293 (293)
25 cd01947 Guanosine_kinase_like 100.0 8E-42 1.7E-46 312.6 29.3 261 62-363 1-265 (265)
26 TIGR02198 rfaE_dom_I rfaE bifu 100.0 1.3E-41 2.8E-46 319.1 28.7 292 59-377 6-315 (315)
27 cd01940 Fructoselysine_kinase_ 100.0 2.9E-41 6.2E-46 308.8 30.0 263 62-362 1-263 (264)
28 TIGR03828 pfkB 1-phosphofructo 100.0 6.7E-41 1.5E-45 312.6 32.1 287 65-379 4-302 (304)
29 cd01939 Ketohexokinase Ketohex 100.0 3.4E-41 7.3E-46 312.5 28.3 273 62-362 1-289 (290)
30 cd01172 RfaE_like RfaE encodes 100.0 4.7E-41 1E-45 313.7 26.9 278 62-365 1-297 (304)
31 PRK09513 fruK 1-phosphofructok 100.0 7.3E-40 1.6E-44 306.6 32.6 289 63-379 5-306 (312)
32 PRK09813 fructoselysine 6-kina 100.0 2E-40 4.3E-45 302.5 27.1 258 61-362 1-259 (260)
33 cd01943 MAK32 MAK32 kinase. M 100.0 7E-41 1.5E-45 314.5 23.7 277 62-362 1-304 (328)
34 PRK13508 tagatose-6-phosphate 100.0 7.5E-40 1.6E-44 306.1 29.9 289 63-379 3-304 (309)
35 TIGR01231 lacC tagatose-6-phos 100.0 6.9E-40 1.5E-44 306.3 27.9 293 64-379 3-304 (309)
36 cd01941 YeiC_kinase_like YeiC- 100.0 8.3E-40 1.8E-44 302.9 27.5 275 62-358 1-287 (288)
37 TIGR03168 1-PFK hexose kinase, 100.0 1.6E-39 3.5E-44 303.2 29.4 284 68-379 7-302 (303)
38 PRK10294 6-phosphofructokinase 100.0 2.5E-39 5.5E-44 302.5 30.8 291 63-379 5-307 (309)
39 cd01164 FruK_PfkB_like 1-phosp 100.0 1.1E-38 2.4E-43 295.5 29.1 274 62-362 2-288 (289)
40 PLN02630 pfkB-type carbohydrat 100.0 7E-38 1.5E-42 292.8 30.8 274 57-379 8-292 (335)
41 PRK11316 bifunctional heptose 100.0 3E-38 6.4E-43 311.8 29.1 288 61-377 11-313 (473)
42 PLN02548 adenosine kinase 100.0 3.7E-38 7.9E-43 297.6 28.0 263 85-364 44-325 (332)
43 COG1105 FruK Fructose-1-phosph 100.0 9.4E-38 2E-42 280.8 27.9 285 67-379 7-304 (310)
44 cd01937 ribokinase_group_D Rib 100.0 1.1E-36 2.4E-41 276.9 26.6 254 62-358 1-254 (254)
45 cd01946 ribokinase_group_C Rib 100.0 1E-36 2.2E-41 280.6 25.8 273 62-363 1-276 (277)
46 KOG2854 Possible pfkB family c 100.0 3E-32 6.4E-37 241.9 22.3 285 62-363 8-335 (343)
47 COG2870 RfaE ADP-heptose synth 100.0 1E-30 2.2E-35 236.9 24.3 288 59-375 9-310 (467)
48 cd00287 ribokinase_pfkB_like r 100.0 8.1E-29 1.8E-33 216.1 21.3 188 62-330 1-196 (196)
49 KOG2947 Carbohydrate kinase [C 100.0 2.3E-28 4.9E-33 206.8 21.9 276 60-363 4-299 (308)
50 PRK12413 phosphomethylpyrimidi 99.8 2.3E-19 5E-24 162.9 19.0 226 110-360 4-243 (253)
51 cd01173 pyridoxal_pyridoxamine 99.8 2.2E-19 4.8E-24 163.1 18.8 166 185-359 71-251 (254)
52 PRK05756 pyridoxamine kinase; 99.8 6.3E-19 1.4E-23 162.8 18.5 167 184-359 72-255 (286)
53 TIGR00687 pyridox_kin pyridoxa 99.8 1.9E-18 4E-23 159.7 18.4 161 184-354 72-251 (286)
54 PRK12412 pyridoxal kinase; Rev 99.8 4.5E-18 9.8E-23 155.4 20.6 165 183-359 67-246 (268)
55 PRK07105 pyridoxamine kinase; 99.8 1.5E-18 3.2E-23 160.2 17.3 165 186-360 75-256 (284)
56 TIGR00097 HMP-P_kinase phospho 99.8 4.5E-18 9.8E-23 154.4 19.9 160 187-359 68-240 (254)
57 cd01169 HMPP_kinase 4-amino-5- 99.8 9.4E-18 2E-22 151.3 20.3 161 186-358 68-240 (242)
58 PRK06427 bifunctional hydroxy- 99.8 7.6E-18 1.6E-22 154.1 19.4 161 186-359 73-248 (266)
59 PRK08176 pdxK pyridoxal-pyrido 99.8 9.8E-18 2.1E-22 154.1 19.2 165 184-359 86-266 (281)
60 PRK08573 phosphomethylpyrimidi 99.8 1.5E-17 3.2E-22 162.3 19.2 149 202-358 82-243 (448)
61 PRK12616 pyridoxal kinase; Rev 99.7 1.4E-16 3.1E-21 145.6 19.8 161 187-359 75-249 (270)
62 PTZ00344 pyridoxal kinase; Pro 99.7 1.9E-15 4E-20 140.2 19.8 162 186-359 77-258 (296)
63 KOG3009 Predicted carbohydrate 99.6 2.7E-15 5.9E-20 138.4 12.9 230 64-358 344-599 (614)
64 PLN02978 pyridoxal kinase 99.6 9.5E-14 2.1E-18 129.1 21.0 162 187-359 87-267 (308)
65 PLN02898 HMP-P kinase/thiamin- 99.6 2.9E-14 6.3E-19 141.5 18.6 161 187-360 79-254 (502)
66 PTZ00347 phosphomethylpyrimidi 99.6 2.1E-14 4.6E-19 142.6 17.3 148 203-359 311-478 (504)
67 PF08543 Phos_pyr_kin: Phospho 99.5 3.8E-13 8.2E-18 121.3 17.6 161 186-358 60-233 (246)
68 PRK14713 multifunctional hydro 99.5 1.6E-13 3.6E-18 136.8 16.1 158 187-357 99-270 (530)
69 COG0351 ThiD Hydroxymethylpyri 99.5 1.1E-12 2.4E-17 116.1 18.0 149 203-358 84-244 (263)
70 cd01171 YXKO-related B.subtili 99.5 8.1E-13 1.8E-17 120.0 16.4 157 183-360 74-236 (254)
71 PRK09517 multifunctional thiam 99.5 4.4E-13 9.6E-18 138.6 15.5 159 187-359 311-484 (755)
72 cd01170 THZ_kinase 4-methyl-5- 99.5 2.2E-12 4.9E-17 115.7 17.3 164 181-358 44-221 (242)
73 COG2240 PdxK Pyridoxal/pyridox 99.4 1.6E-11 3.5E-16 109.2 17.0 165 183-358 70-249 (281)
74 TIGR00196 yjeF_cterm yjeF C-te 99.4 1.5E-11 3.3E-16 112.7 16.0 175 182-379 88-269 (272)
75 PTZ00493 phosphomethylpyrimidi 99.3 1.5E-10 3.2E-15 106.8 16.5 134 219-359 107-285 (321)
76 PRK09355 hydroxyethylthiazole 99.2 2.3E-09 4.9E-14 97.6 18.0 173 170-357 39-224 (263)
77 TIGR00694 thiM hydroxyethylthi 99.1 4.7E-09 1E-13 94.7 16.7 170 172-356 36-218 (249)
78 KOG2599 Pyridoxal/pyridoxine/p 98.8 3.1E-07 6.6E-12 80.4 15.6 160 183-350 78-254 (308)
79 KOG2598 Phosphomethylpyrimidin 98.6 2.7E-06 5.9E-11 79.2 15.3 161 187-358 93-282 (523)
80 PRK03979 ADP-specific phosphof 98.2 0.00011 2.3E-09 71.0 16.6 163 90-262 99-305 (463)
81 TIGR02045 P_fruct_ADP ADP-spec 98.1 0.00018 3.9E-09 69.1 16.1 163 90-262 86-291 (446)
82 PRK14039 ADP-dependent glucoki 98.1 0.00041 9E-09 66.8 18.5 236 89-373 87-376 (453)
83 PF02110 HK: Hydroxyethylthiaz 98.0 0.0013 2.8E-08 58.6 18.8 146 182-334 45-203 (246)
84 PRK10565 putative carbohydrate 97.9 0.00063 1.4E-08 67.7 16.4 145 184-352 318-468 (508)
85 PRK14038 ADP-dependent glucoki 97.8 0.0017 3.7E-08 62.6 17.4 236 89-377 106-388 (453)
86 PF04587 ADP_PFK_GK: ADP-speci 97.6 0.0012 2.6E-08 64.5 14.2 163 91-263 93-292 (444)
87 PF01256 Carb_kinase: Carbohyd 97.6 0.0039 8.4E-08 55.9 15.6 167 182-376 63-240 (242)
88 COG2145 ThiM Hydroxyethylthiaz 97.4 0.056 1.2E-06 48.0 19.5 158 169-334 39-209 (265)
89 KOG3974 Predicted sugar kinase 97.3 0.0036 7.9E-08 55.1 11.3 143 181-329 96-240 (306)
90 cd01938 ADPGK_ADPPFK ADP-depen 97.2 0.0034 7.3E-08 61.0 10.5 165 89-263 102-286 (445)
91 COG0063 Predicted sugar kinase 97.0 0.038 8.2E-07 50.6 15.3 174 183-379 98-280 (284)
92 COG4809 Archaeal ADP-dependent 92.8 8.5 0.00019 36.5 15.7 81 182-266 221-311 (466)
93 KOG4184 Predicted sugar kinase 91.4 0.46 1E-05 43.9 5.8 162 87-263 137-317 (478)
94 PRK10076 pyruvate formate lyas 89.1 3.5 7.5E-05 36.2 9.3 75 203-285 53-132 (213)
95 COG1180 PflA Pyruvate-formate 77.9 21 0.00045 32.4 9.6 90 186-285 83-177 (260)
96 TIGR00334 5S_RNA_mat_M5 ribonu 75.5 28 0.00061 29.3 8.8 83 186-278 22-107 (174)
97 COG2248 Predicted hydrolase (m 54.3 1.4E+02 0.003 27.0 9.3 97 145-248 162-265 (304)
98 PF00070 Pyr_redox: Pyridine n 54.1 31 0.00066 24.6 4.6 42 96-137 11-58 (80)
99 PF13986 DUF4224: Domain of un 52.5 19 0.00042 23.1 2.9 32 252-285 2-33 (47)
100 TIGR02494 PFLE_PFLC glycyl-rad 50.9 1.3E+02 0.0028 27.6 9.4 73 203-283 140-217 (295)
101 COG1922 WecG Teichoic acid bio 48.9 69 0.0015 28.9 6.8 99 181-290 59-171 (253)
102 PRK15452 putative protease; Pr 44.7 1.8E+02 0.0039 28.7 9.6 84 176-260 13-103 (443)
103 PRK11145 pflA pyruvate formate 43.5 1.8E+02 0.004 25.7 8.9 75 203-283 85-164 (246)
104 cd00562 NifX_NifB This CD repr 42.6 45 0.00097 24.8 4.2 39 93-136 47-85 (102)
105 TIGR00696 wecB_tagA_cpsF bacte 42.3 1.5E+02 0.0033 25.1 7.7 77 203-290 34-110 (177)
106 PHA00438 hypothetical protein 41.4 23 0.00049 25.2 2.0 18 313-330 45-62 (81)
107 PRK06702 O-acetylhomoserine am 37.7 3.3E+02 0.0072 26.7 10.2 22 206-227 166-187 (432)
108 PF11469 Ribonucleas_3_2: Ribo 37.7 48 0.001 25.1 3.4 32 311-348 52-83 (120)
109 PF10911 DUF2717: Protein of u 36.8 29 0.00062 24.7 2.0 20 312-331 44-63 (77)
110 COG1433 Uncharacterized conser 36.0 57 0.0012 25.8 3.8 42 90-136 48-89 (121)
111 COG0144 Sun tRNA and rRNA cyto 35.2 3.3E+02 0.0072 25.9 9.6 47 87-136 162-209 (355)
112 COG0136 Asd Aspartate-semialde 34.8 4E+02 0.0086 25.2 13.7 96 108-225 2-97 (334)
113 COG0206 FtsZ Cell division GTP 34.3 2.2E+02 0.0048 26.9 8.0 150 91-261 18-173 (338)
114 PF02579 Nitro_FeMo-Co: Dinitr 34.2 30 0.00065 25.3 2.0 42 90-136 36-77 (94)
115 PF01118 Semialdhyde_dh: Semia 33.0 1.3E+02 0.0028 23.3 5.5 42 180-229 60-101 (121)
116 PRK13397 3-deoxy-7-phosphohept 32.5 2.6E+02 0.0056 25.2 7.8 78 203-291 65-161 (250)
117 COG1058 CinA Predicted nucleot 32.2 1.1E+02 0.0025 27.5 5.5 47 94-142 21-67 (255)
118 cd00851 MTH1175 This uncharact 31.9 78 0.0017 23.5 4.0 39 93-136 49-87 (103)
119 COG0826 Collagenase and relate 31.8 4.2E+02 0.0091 25.2 9.6 103 184-287 24-144 (347)
120 TIGR02826 RNR_activ_nrdG3 anae 31.6 2.2E+02 0.0047 23.3 6.7 58 188-258 63-120 (147)
121 PRK12399 tagatose 1,6-diphosph 31.6 1.4E+02 0.0031 27.9 6.1 52 202-253 140-204 (324)
122 PRK08133 O-succinylhomoserine 30.5 2.9E+02 0.0062 26.6 8.5 20 207-226 166-185 (390)
123 TIGR01093 aroD 3-dehydroquinat 29.6 3.9E+02 0.0084 23.4 11.2 95 187-295 93-194 (228)
124 TIGR00065 ftsZ cell division p 28.8 5.1E+02 0.011 24.6 9.6 30 90-119 23-52 (349)
125 PRK14039 ADP-dependent glucoki 28.7 37 0.0008 33.4 2.0 31 300-330 416-447 (453)
126 TIGR01826 CofD_related conserv 27.7 4.9E+02 0.011 24.3 9.0 74 182-258 168-251 (310)
127 PF03808 Glyco_tran_WecB: Glyc 27.6 2.2E+02 0.0047 23.8 6.3 21 270-290 91-111 (172)
128 PRK09330 cell division protein 27.2 5.2E+02 0.011 25.0 9.4 141 90-252 19-164 (384)
129 PRK13018 cell division protein 26.9 4.9E+02 0.011 25.1 9.2 142 90-253 34-180 (378)
130 KOG0053 Cystathionine beta-lya 26.6 2.3E+02 0.005 27.5 6.8 23 207-229 182-204 (409)
131 PF04016 DUF364: Domain of unk 26.6 1.4E+02 0.003 24.3 4.8 41 181-225 57-97 (147)
132 PF10678 DUF2492: Protein of u 26.1 1.5E+02 0.0032 21.4 4.1 35 99-133 26-60 (78)
133 PF02659 DUF204: Domain of unk 25.7 1.8E+02 0.0039 19.9 4.6 14 319-332 4-17 (67)
134 TIGR00177 molyb_syn molybdenum 24.9 2.2E+02 0.0048 22.9 5.7 48 93-142 26-73 (144)
135 PRK03673 hypothetical protein; 24.8 2E+02 0.0043 27.9 6.1 49 94-144 21-69 (396)
136 cd05014 SIS_Kpsf KpsF-like pro 24.6 2.3E+02 0.005 21.8 5.7 39 270-308 64-102 (128)
137 KOG0174 20S proteasome, regula 24.6 45 0.00097 28.5 1.5 44 315-365 147-191 (224)
138 PRK13575 3-dehydroquinate dehy 24.6 5E+02 0.011 23.1 10.9 97 187-295 98-201 (238)
139 PF10087 DUF2325: Uncharacteri 24.5 1.5E+02 0.0031 22.1 4.3 39 182-224 44-82 (97)
140 PRK07535 methyltetrahydrofolat 24.3 5.3E+02 0.012 23.3 9.0 90 185-292 37-128 (261)
141 COG2117 Predicted subunit of t 24.2 1.9E+02 0.0041 24.2 4.9 51 91-141 7-59 (198)
142 TIGR02493 PFLA pyruvate format 23.6 4.9E+02 0.011 22.6 9.3 75 203-283 80-159 (235)
143 cd00885 cinA Competence-damage 23.5 2.4E+02 0.0053 23.6 5.8 37 94-132 19-55 (170)
144 TIGR03609 S_layer_CsaB polysac 23.2 5.7E+02 0.012 23.2 8.9 70 182-253 60-133 (298)
145 PRK06901 aspartate-semialdehyd 23.1 6.3E+02 0.014 23.7 9.4 91 109-225 5-95 (322)
146 PRK06249 2-dehydropantoate 2-r 22.9 1.3E+02 0.0029 27.8 4.6 24 92-115 13-36 (313)
147 PF00289 CPSase_L_chain: Carba 22.8 98 0.0021 23.9 3.1 94 116-220 8-102 (110)
148 PTZ00058 glutathione reductase 22.5 94 0.002 31.7 3.7 62 8-113 16-77 (561)
149 COG1618 Predicted nucleotide k 22.5 4.8E+02 0.01 22.0 9.6 47 118-165 18-68 (179)
150 PRK06728 aspartate-semialdehyd 22.4 5.4E+02 0.012 24.5 8.5 94 107-226 5-100 (347)
151 PTZ00300 pyruvate kinase; Prov 22.2 7.8E+02 0.017 24.4 11.3 77 182-258 206-290 (454)
152 PRK05973 replicative DNA helic 21.9 5.7E+02 0.012 22.8 9.2 104 96-225 81-191 (237)
153 PRK14106 murD UDP-N-acetylmura 21.7 3.6E+02 0.0077 26.4 7.6 44 91-135 12-55 (450)
154 PRK05968 hypothetical protein; 21.5 7.2E+02 0.016 23.8 9.5 23 204-226 164-186 (389)
155 TIGR03853 matur_matur probable 21.4 2E+02 0.0044 20.7 4.1 36 98-133 23-58 (77)
156 COG0626 MetC Cystathionine bet 21.3 4.7E+02 0.01 25.4 7.9 50 88-139 81-133 (396)
157 COG3845 ABC-type uncharacteriz 21.3 1.6E+02 0.0034 29.3 4.6 83 204-288 116-198 (501)
158 cd00614 CGS_like CGS_like: Cys 21.2 4.2E+02 0.009 25.1 7.7 21 206-226 144-164 (369)
159 PRK06598 aspartate-semialdehyd 21.1 7E+02 0.015 24.0 9.0 94 109-226 3-99 (369)
160 PRK08401 L-aspartate oxidase; 21.1 1.2E+02 0.0025 30.1 4.0 24 92-115 9-32 (466)
161 TIGR01745 asd_gamma aspartate- 20.9 7.5E+02 0.016 23.7 12.0 93 109-225 2-97 (366)
162 PRK00278 trpC indole-3-glycero 20.9 6.2E+02 0.013 22.8 10.3 68 176-257 123-190 (260)
163 PF00919 UPF0004: Uncharacteri 20.4 3.7E+02 0.008 20.1 5.7 60 185-252 35-97 (98)
164 TIGR01328 met_gam_lyase methio 20.4 4.1E+02 0.0089 25.5 7.5 21 206-226 163-183 (391)
165 KOG0257 Kynurenine aminotransf 20.3 2E+02 0.0043 27.9 5.0 56 170-225 156-213 (420)
166 COG1646 Predicted phosphate-bi 20.1 3.9E+02 0.0084 23.8 6.4 40 184-226 39-79 (240)
167 PRK01215 competence damage-ind 20.1 2.8E+02 0.006 25.2 5.9 46 95-142 24-69 (264)
No 1
>PLN02323 probable fructokinase
Probab=100.00 E-value=1.3e-52 Score=395.88 Aligned_cols=322 Identities=80% Similarity=1.267 Sum_probs=282.6
Q ss_pred CCCCcEEEEccceeecccCCCCCCccCCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCC
Q 016868 58 RESPLVVCFGEMLIDFVPTVSGLSLAESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGA 137 (381)
Q Consensus 58 ~~~~~vlviG~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~ 137 (381)
.++++|+++|++++|++..+++.+......+...+||++.|+|.+|++||.++.++|.+|+|.+|+++++.|++.||+++
T Consensus 8 ~~~~~i~~iG~~~vD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~~~GI~~~ 87 (330)
T PLN02323 8 AESSLVVCFGEMLIDFVPTVSGVSLAEAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLADILKKNGVNNE 87 (330)
T ss_pred CCCCcEEEechhhhhhccCCCCCCcccccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHHHHHHHHcCCCCc
Confidence 45578999999999999887776665556678899999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCC
Q 016868 138 GMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAG 217 (381)
Q Consensus 138 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 217 (381)
++.+.++.+|+++++.++++|+|++.+++..+++..+++++++.+.++.++++|++++.+..+........+++.+++.|
T Consensus 88 ~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g 167 (330)
T PLN02323 88 GVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLDLIRKAKIFHYGSISLITEPCRSAHLAAMKIAKEAG 167 (330)
T ss_pred ceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCChHHHccCCEEEEechhccCchHHHHHHHHHHHHHHcC
Confidence 99999999999999999889999998876566666778888877788899999998876655555566778899999999
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEEEEecCCceEEEe
Q 016868 218 VVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYT 297 (381)
Q Consensus 218 ~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~ 297 (381)
+++++||+.+...|.+.+..++.+.++++++|++++|++|++.+++....+.+++. +++..|++.||||+|++|+++++
T Consensus 168 ~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~-~~~~~g~~~vvvt~G~~G~~~~~ 246 (330)
T PLN02323 168 ALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDDDTVV-KLWHPNLKLLLVTEGEEGCRYYT 246 (330)
T ss_pred CEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCccHHHHH-HHHhcCCCEEEEecCCCceEEEe
Confidence 99999999988888777777788889999999999999999999987655444444 45567999999999999999999
Q ss_pred CCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHh
Q 016868 298 KDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAVLNAIH 377 (381)
Q Consensus 298 ~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~~~v~~~l~ 377 (381)
+++.+++|+++++++||+||||+|+|||++++++|+++..++.++++|+++|+++|++++++.|+...+|++++++++++
T Consensus 247 ~~~~~~~~~~~v~vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~l~~al~~a~a~Aa~~v~~~g~~~~~~~~~~v~~~l~ 326 (330)
T PLN02323 247 KDFKGRVEGFKVKAVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLREALRFANACGAITTTERGAIPALPTKEAVLKLLK 326 (330)
T ss_pred CCCceEeCCccCCCCCCCCcHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHHhccCCccCCCCHHHHHHHHH
Confidence 88778899999999999999999999999999999864334456899999999999999999999888899999999998
Q ss_pred CCC
Q 016868 378 APV 380 (381)
Q Consensus 378 ~~~ 380 (381)
+.+
T Consensus 327 ~~~ 329 (330)
T PLN02323 327 KAV 329 (330)
T ss_pred Hhc
Confidence 765
No 2
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=9.3e-51 Score=393.48 Aligned_cols=319 Identities=38% Similarity=0.621 Sum_probs=263.4
Q ss_pred CCcEEEEccceeecccCCCCCCc--c------------CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHH
Q 016868 60 SPLVVCFGEMLIDFVPTVSGLSL--A------------ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYML 125 (381)
Q Consensus 60 ~~~vlviG~~~iD~~~~~~~~~~--~------------~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i 125 (381)
++.|+|||++.+|++........ . ....+...+||++.|+|++|+|||.++.|+|.||+|.+|+++
T Consensus 125 ~~~v~~~Ge~liDf~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l 204 (496)
T PLN02543 125 PPLVCCFGAVQKEFVPTVRVHDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEEL 204 (496)
T ss_pred CCeEEEeChhhhhhcCCCcccccccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 35699999999999986432111 0 355688899999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCCeeecCCCCceEEEEEec--CCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhH
Q 016868 126 ADILKENNVNGAGMRFDPGARTALAFVTLR--SDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCK 203 (381)
Q Consensus 126 ~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~ 203 (381)
++.|+++||+++++.+.++.+|+.+++.++ .+| +.+.++...+++..+.+++++...+++++++|++++.+..+...
T Consensus 205 ~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~g-r~~~~~~~~gA~~~L~~~di~~~~l~~a~ilh~~~~~l~~~~~~ 283 (496)
T PLN02543 205 VLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGG-KMVAETVKEAAEDSLLASELNLAVLKEARMFHFNSEVLTSPSMQ 283 (496)
T ss_pred HHHHHHcCCcccceEecCCCCCceEEEEEEeCCCC-CEEEEecCCCHHHhCChhhcCHhHhCCCceEEECChhhcCchHH
Confidence 999999999999999999999999999874 445 55654445667777888888878899999999999877666667
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCC--------CC-------
Q 016868 204 SAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGED--------PY------- 268 (381)
Q Consensus 204 ~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~--------~~------- 268 (381)
+...++++.+++.|++|+||++.|+.+|.+.+..++.+.++++++|++++|++|++.|+|... +.
T Consensus 284 ~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~~~~~~~~~~~~~ 363 (496)
T PLN02543 284 STLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKRNYPPQYYAESFE 363 (496)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccccccchhhhhhhh
Confidence 888999999999999999999999999988777888899999999999999999999998641 00
Q ss_pred -----------hHHHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEccc-----cccccCCCCccHHHHHHHHHHHHcC
Q 016868 269 -----------DDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGL-----KVEAVDATGAGDAFVAGILSQLSTD 332 (381)
Q Consensus 269 -----------~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~-----~v~vvdttGAGDaF~ag~l~~l~~g 332 (381)
..+.+..+.+.|++.||||+|++|+++++++....++.. +..+||||||||+|.|||+++|+++
T Consensus 364 ~~~~~~~~~~~~~~~~~~l~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~~~~VDTTGAGDAF~AGfL~~Ll~~ 443 (496)
T PLN02543 364 QTKNWRDYYHYTPEEIAPLWHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLITPFTCDRTGSGDAVVAAIMRKLTTC 443 (496)
T ss_pred hhhcccccccCCHHHHHHHHHCCCCEEEEEcCCCcEEEEECCCcccccccccccCCCCCcCCCchHHHHHHHHHHHHHhc
Confidence 113345677789999999999999999986422222111 1125899999999999999999963
Q ss_pred CccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHhCC
Q 016868 333 FSLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAVLNAIHAP 379 (381)
Q Consensus 333 ~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~~~v~~~l~~~ 379 (381)
.....++.++++|+++|+++||+++++.|+.+++|++++|+++++++
T Consensus 444 ~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~~~~~~ 490 (496)
T PLN02543 444 PEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQV 490 (496)
T ss_pred cccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhh
Confidence 21111122399999999999999999999999999999999999885
No 3
>PLN02967 kinase
Probab=100.00 E-value=4.2e-50 Score=392.01 Aligned_cols=314 Identities=31% Similarity=0.558 Sum_probs=264.6
Q ss_pred CcEEEEccceeecccCCCCCC--------------ccCCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHH
Q 016868 61 PLVVCFGEMLIDFVPTVSGLS--------------LAESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLA 126 (381)
Q Consensus 61 ~~vlviG~~~iD~~~~~~~~~--------------~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~ 126 (381)
+.|+|||++++|+++...... ..++..+...+||++.|+|++|+|||.++.|+|.||+|.+|++++
T Consensus 197 ~~V~~iGe~l~D~~p~g~~~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~ll 276 (581)
T PLN02967 197 PLVCCFGAAQHAFVPSGRPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAML 276 (581)
T ss_pred CeEEEECchhheecccCccchhhhhccccccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHH
Confidence 569999999999977421110 114567888999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHH
Q 016868 127 DILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAH 206 (381)
Q Consensus 127 ~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~ 206 (381)
+.|+++||+++++++.++.+|+++++.++++|++.+.+ +.++++..+..+++....+.+++++|++++.+..+...+.+
T Consensus 277 ~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~-~~~gAd~~L~~~di~~~~l~~A~i~hfgg~~ll~e~~~~al 355 (581)
T PLN02967 277 YYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTC-VKPCAEDSLSKSEINIDVLKEAKMFYFNTHSLLDPTMRSTT 355 (581)
T ss_pred HHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEE-ecCChhhhCChhhcCHhHhcCCCEEEEeCchhcccchHHHH
Confidence 99999999999999988889999999999999987753 35777778888888877889999999999876667778889
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCC---------------hHH
Q 016868 207 IAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPY---------------DDA 271 (381)
Q Consensus 207 ~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~---------------~~~ 271 (381)
..+++.+++.|++|+||++.++++|.+.+..++.+.++++++|+|++|++|+..|+|..... ..+
T Consensus 356 l~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~~~~~~~~~~~~~e 435 (581)
T PLN02967 356 LRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTKDNDKSKFVHYSPE 435 (581)
T ss_pred HHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCccccccccccchhccccchHH
Confidence 99999999999999999999999998777777888999999999999999999999864311 123
Q ss_pred HHHHHHhcCCCEEEEEecCCceEEEeCCc---eEEEcccccc--ccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHH
Q 016868 272 VVYKLFHANLKLLLVTEGPDGCRYYTKDF---SGRVQGLKVE--AVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDAL 346 (381)
Q Consensus 272 ~~~~l~~~g~~~vvvt~G~~G~~~~~~~~---~~~~~~~~v~--vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al 346 (381)
.+..+...|++.||||+|++|++++.+++ ...+++++++ +||||||||+|+|||+++|+++.....+..++++|+
T Consensus 436 ~a~~l~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~V~V~vVDTTGAGDAF~AGfL~~Ll~g~~~~~g~~~LeeaL 515 (581)
T PLN02967 436 VVAPLWHENLKVLFVTNGTSKIHYYTKEHNGAVHGMEDAPITPFTSDMSASGDGIVAGLMRMLTVQPHLITDKGYLEKTI 515 (581)
T ss_pred HHHHHHhCCCCEEEEEECccceEEEECCCceeEeeccCCCCCCCCCCCCchhHHHHHHHHHHHHhccCcccccccHHHHH
Confidence 45566677999999999999999998754 3334555666 599999999999999999998521111112399999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCHHHHHHH
Q 016868 347 RFANACGALTVMERGAIPALPTREAVLNA 375 (381)
Q Consensus 347 ~~A~~~Aa~~~~~~G~~~~~~~~~~v~~~ 375 (381)
++|+++||++++..|+.+++|++++|++.
T Consensus 516 rfAnAaAAL~vt~~GA~~glPt~~eV~~~ 544 (581)
T PLN02967 516 KYAIDCGVIDQWLLARTRGFPPKEDMEDE 544 (581)
T ss_pred HHHHHHHHHHhccCCCccCCCCHHHHhhh
Confidence 99999999999999999999999999754
No 4
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=2.3e-49 Score=387.33 Aligned_cols=311 Identities=26% Similarity=0.328 Sum_probs=256.8
Q ss_pred CCCCcEEEEccceeecccCCCCCCccCC---------------CCccccCCChHHHHHHHHHHcCCceEEEeecCCChHH
Q 016868 58 RESPLVVCFGEMLIDFVPTVSGLSLAES---------------PAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFG 122 (381)
Q Consensus 58 ~~~~~vlviG~~~iD~~~~~~~~~~~~~---------------~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g 122 (381)
.++++|+++|++++|++..++..|.... ......+|| +.|+|++|++||.++.++|.||+|.+|
T Consensus 70 ~~~~~vl~lG~~~vD~i~~V~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~lig~VG~D~~G 148 (470)
T PLN02341 70 GKEIDVATLGNLCVDIVLPVPELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCSTIGHVGDEIYG 148 (470)
T ss_pred cccccEEEECCcceeEEEecCCCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEEEEEecCcHHH
Confidence 4567999999999999999888876532 223445688 689999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCeeecC--------CCCceEEEEEecCCCCceEEEecCCCccccCC-hhcc---chhhcCCccEE
Q 016868 123 YMLADILKENNVNGAGMRFDP--------GARTALAFVTLRSDGEREFMFYRNPSADMLLQ-EAEL---DLSLITKAKIF 190 (381)
Q Consensus 123 ~~i~~~l~~~gi~~~~v~~~~--------~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~l---~~~~i~~~~~~ 190 (381)
+++++.|++.||+++++...+ ...|+.++++++++|++.+....+........ ...+ ..+.+++++++
T Consensus 149 ~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~adiv 228 (470)
T PLN02341 149 KFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAKMAIRQSKAL 228 (470)
T ss_pred HHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccHHHHhhhhcCCEE
Confidence 999999999999999887665 35799999999999998765321111110000 0011 12567899999
Q ss_pred EEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCC-CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCCh
Q 016868 191 HYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRL-PLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYD 269 (381)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~-~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~ 269 (381)
|++++.. .+.+.+.+.++++.+++.|+++++|++++. .+|.+.+..++.+.++++++|++++|++|++.+++... .
T Consensus 229 ~lsg~~~-~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~~~--~ 305 (470)
T PLN02341 229 FCNGYVF-DELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGIRN--P 305 (470)
T ss_pred EEeceeC-CcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCCCC--H
Confidence 9998753 345667888999999999999999998764 34444444556688899999999999999999998743 3
Q ss_pred HHHHHHHHhcC--CCEEEEEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHH
Q 016868 270 DAVVYKLFHAN--LKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALR 347 (381)
Q Consensus 270 ~~~~~~l~~~g--~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~ 347 (381)
+++++.+++.+ .+.||||+|++|++++++++.+++|+++++++|||||||+|+|||++++++|++ +++|++
T Consensus 306 ~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~~v~vVDTtGAGDaF~Agfl~gll~G~~-------l~eal~ 378 (470)
T PLN02341 306 ILAGQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKVNVVDTVGCGDSFAAAIALGYIHNLP-------LVNTLT 378 (470)
T ss_pred HHHHHHHHhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCCCcCCCCCcCccHHHHHHHHHHHHcCCC-------HHHHHH
Confidence 66777887776 589999999999999999988999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCHHHHHHHHhCC
Q 016868 348 FANACGALTVMERGAIPALPTREAVLNAIHAP 379 (381)
Q Consensus 348 ~A~~~Aa~~~~~~G~~~~~~~~~~v~~~l~~~ 379 (381)
+|+++|++++++.|+..++|++++|++++++.
T Consensus 379 ~A~a~aA~~v~~~Ga~~~~p~~~ev~~~l~~~ 410 (470)
T PLN02341 379 LANAVGAATAMGCGAGRNVATLEKVLELLRAS 410 (470)
T ss_pred HHHHHHHHHHcCcCCCCCCCCHHHHHHHHHhc
Confidence 99999999999999999999999999988753
No 5
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-49 Score=353.92 Aligned_cols=315 Identities=56% Similarity=0.901 Sum_probs=285.7
Q ss_pred CCCcEEEEccceeecccCCCCCCcc----CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCC
Q 016868 59 ESPLVVCFGEMLIDFVPTVSGLSLA----ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNV 134 (381)
Q Consensus 59 ~~~~vlviG~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi 134 (381)
.++.|+|+|++++|+++.....|.. .+..+...+||++.|+|++++|||.++.+||+||+|.||..+.+.|+++||
T Consensus 8 ~~~~vv~fGs~~~D~V~~~~~~p~~ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l~~~L~~~~V 87 (330)
T KOG2855|consen 8 EPPLVVVFGSMLIDFVPSTRRLPNAGETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDLLDILKQNGV 87 (330)
T ss_pred CCceEEEeccceeeeeeccccCCCccccccCCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHHHHHHHhhCCc
Confidence 4578999999999999999999887 788899999999999999999999999999999999999999999999999
Q ss_pred CCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHH
Q 016868 135 NGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAK 214 (381)
Q Consensus 135 ~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 214 (381)
+++++..+++.+|+..++.+..+|++.+.+++++...+...+.++..+.++.+.++|+.+..+............++.++
T Consensus 88 ~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~ak~~~~q~ei~~~~~~~s~~~~~~~~~~ 167 (330)
T KOG2855|consen 88 DTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKEAKVFHCQSEILIEEPMRSLHIAAVKVAK 167 (330)
T ss_pred ccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhhccEEEEeeecCCcchhHHHHHhhhhhhh
Confidence 99999999999999999999999999999998888877777778888999999999999887777777666666677888
Q ss_pred HCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEEEEecCCceE
Q 016868 215 DAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCR 294 (381)
Q Consensus 215 ~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~ 294 (381)
+.+..+++||+.+.++|+.....+..+..++..+|++.+..+|++.++|... +++. .|++.+.+.||||+|++||+
T Consensus 168 ~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~~---~~~~-~L~~~~~k~viVTlG~kG~~ 243 (330)
T KOG2855|consen 168 NAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGIED---DKIL-KLWHMKLKLVIVTLGEKGCR 243 (330)
T ss_pred cccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccCcc---chHH-HHhccCCCEEEEEeCCCceE
Confidence 9998899999999999998877777788999999999999999999998833 3334 77788889999999999999
Q ss_pred EEeCCceE-EEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHH
Q 016868 295 YYTKDFSG-RVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAVL 373 (381)
Q Consensus 295 ~~~~~~~~-~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~~~v~ 373 (381)
+|+++..- ++|++.|++||||||||+|+|||+.+|.+| ++.. ...+++++++|+++++.+++++|+.+++|++++++
T Consensus 244 y~tk~~~~~~v~~~~V~~VDtTGAGDsFvgal~~~L~~~-~~~~-~~~L~~~l~~A~a~~ai~v~~~Ga~~s~p~~~~~~ 321 (330)
T KOG2855|consen 244 YYTKDFKGSHVPAFKVKAVDTTGAGDSFVGALAVQLVRG-SLLP-ELSLEEALRFANACGAITVQRKGAIPSMPTEKEVQ 321 (330)
T ss_pred EEecCCCCCCCCCcccccccCCCchHHHHHHHHHHHhhc-cccc-hHHHHHHHHHHHHhhhHHhhccCCCccCccHHHHH
Confidence 99988555 999999999999999999999999999999 4433 67799999999999999999999999999999999
Q ss_pred HHHhCC
Q 016868 374 NAIHAP 379 (381)
Q Consensus 374 ~~l~~~ 379 (381)
+.+...
T Consensus 322 ~~~~~~ 327 (330)
T KOG2855|consen 322 SLLKSS 327 (330)
T ss_pred HHhhhc
Confidence 887653
No 6
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=8.5e-48 Score=359.11 Aligned_cols=302 Identities=40% Similarity=0.655 Sum_probs=259.7
Q ss_pred CCcEEEEccceeecccCCCCCCccCCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCe
Q 016868 60 SPLVVCFGEMLIDFVPTVSGLSLAESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGM 139 (381)
Q Consensus 60 ~~~vlviG~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v 139 (381)
+.+|+++|++++|+++... ......+||++.|+|.+|++||.++.++|.+|+|.+|+++++.|+++||+++++
T Consensus 2 ~~~il~iG~~~iD~~~~~~-------~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~~~l~~~gI~~~~~ 74 (304)
T PRK09434 2 MNKVWVLGDAVVDLIPEGE-------NRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQQTLQDEGVDTTYL 74 (304)
T ss_pred CCcEEEecchheeeecCCC-------CceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHHHHHHHcCCCCcce
Confidence 4589999999999985421 234668999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCe
Q 016868 140 RFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVV 219 (381)
Q Consensus 140 ~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~ 219 (381)
...++.+|+.+++.++++|+|++.+...++++..++.++++ .+++++++|++++.+..+..++...++++.+++.+.+
T Consensus 75 ~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (304)
T PRK09434 75 RLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP--PFRQGEWLHLCSIALSAEPSRSTTFEAMRRIKAAGGF 152 (304)
T ss_pred EEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh--hhcCCCEEEEccccccCchHHHHHHHHHHHHHHcCCE
Confidence 98888999999999988899988766555555555555553 3678999999987665555567777899999999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHh-cCCCEEEEEecCCceEEEeC
Q 016868 220 LSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFH-ANLKLLLVTEGPDGCRYYTK 298 (381)
Q Consensus 220 v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~ 298 (381)
+++|++.+...|...+..++.+.++++++|++++|++|++.+++... .+++++.+.+ .+++.||||+|++|++++++
T Consensus 153 v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~~~--~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~ 230 (304)
T PRK09434 153 VSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGTSQ--LEDAIYALADRYPIALLLVTLGAEGVLVHTR 230 (304)
T ss_pred EEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCCCC--HHHHHHHHHhhcCCcEEEEEecCCceEEEeC
Confidence 99999988878877777788888999999999999999999998653 3667788876 78999999999999999998
Q ss_pred CceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHH
Q 016868 299 DFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAVL 373 (381)
Q Consensus 299 ~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~~~v~ 373 (381)
++.+++|+++++++|||||||+|+|||+++|++|++. .++.++++|+++|+++|++++++.|+...+|++++++
T Consensus 231 ~~~~~~~~~~~~~vDttGAGD~f~ag~~~~l~~g~~~-~~~~~~~~a~~~a~~~Aa~~v~~~g~~~~~~~~~~~~ 304 (304)
T PRK09434 231 GQVQHFPAPSVDPVDTTGAGDAFVAGLLAGLSQAGLW-TDEAELAEIIAQAQACGALATTAKGAMTALPNRQELE 304 (304)
T ss_pred CceeEeCCCCCCCCcCCCchHHHHHHHHHHHHcCCCc-cchHHHHHHHHHHHHHHHHHHcccCCcCCCCChHHcC
Confidence 8888999999999999999999999999999999731 1223499999999999999999999988888887763
No 7
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=2.4e-47 Score=356.49 Aligned_cols=293 Identities=28% Similarity=0.374 Sum_probs=252.6
Q ss_pred CcEEEEccceeecccCCCCCCcc----CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCC
Q 016868 61 PLVVCFGEMLIDFVPTVSGLSLA----ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNG 136 (381)
Q Consensus 61 ~~vlviG~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~ 136 (381)
.+|+|+|++++|++..+++.|.. ....+...+||++.|+|++|++||.++.++|.+|+|.+|+++++.|++.||++
T Consensus 3 ~~i~~iG~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~~ 82 (306)
T PRK11142 3 GKLVVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAKDGIDT 82 (306)
T ss_pred CcEEEECCceeeEEEEeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHHcCCCh
Confidence 47999999999999888776554 23456788999999999999999999999999999999999999999999999
Q ss_pred CCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccch--hhcCCccEEEEccccccCchhHHHHHHHHHHHH
Q 016868 137 AGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDL--SLITKAKIFHYGSISLITEPCKSAHIAAAKAAK 214 (381)
Q Consensus 137 ~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 214 (381)
+++...++.+|+++++.++.+|+|++..+ .++...+++++++. +.+.+++++|+++. .+.+.+.++++.++
T Consensus 83 ~~i~~~~~~~t~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~-----~~~~~~~~~~~~a~ 155 (306)
T PRK11142 83 APVSVIKGESTGVALIFVNDEGENSIGIH--AGANAALTPALVEAHRELIANADALLMQLE-----TPLETVLAAAKIAK 155 (306)
T ss_pred hhEEEcCCCCCCEEEEEECCCCCEEEEEe--CCccccCCHHHHHHHHhhhccCCEEEEeCC-----CCHHHHHHHHHHHH
Confidence 99998888899999999998999998876 34555577766652 55889999987642 24567778899999
Q ss_pred HCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCCh---HHHHHHHHhcCCCEEEEEecCC
Q 016868 215 DAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYD---DAVVYKLFHANLKLLLVTEGPD 291 (381)
Q Consensus 215 ~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~---~~~~~~l~~~g~~~vvvt~G~~ 291 (381)
+.|+++++|++....+ ...+++++|++++|++|++.+++....+. .++++.+.+.|++.||||+|++
T Consensus 156 ~~g~~v~~d~~~~~~~----------~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~ 225 (306)
T PRK11142 156 QHGTKVILNPAPAREL----------PDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQKGIETVLITLGSR 225 (306)
T ss_pred HcCCEEEEECCCCccc----------CHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 9999999999743221 23578899999999999999998654332 3456777788999999999999
Q ss_pred ceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHH
Q 016868 292 GCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTREA 371 (381)
Q Consensus 292 G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~~~ 371 (381)
|++++.+++.+++|+++++++||+||||+|+|||++++++|++ +++|+++|+++|++++++.|+.+.+|+.++
T Consensus 226 G~~~~~~~~~~~~~~~~v~vvDt~GAGDaF~Agfi~~l~~g~~-------~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~ 298 (306)
T PRK11142 226 GVWLSENGEGQRVPGFRVQAVDTIAAGDTFNGALVTALLEGKP-------LPEAIRFAHAAAAIAVTRKGAQPSIPWREE 298 (306)
T ss_pred cEEEEeCCcceeccCCCcccccCCCchhHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcCCCcccccCCCHHH
Confidence 9999988888899999999999999999999999999999999 999999999999999999999877899999
Q ss_pred HHHHHh
Q 016868 372 VLNAIH 377 (381)
Q Consensus 372 v~~~l~ 377 (381)
++++++
T Consensus 299 ~~~~~~ 304 (306)
T PRK11142 299 IDAFLQ 304 (306)
T ss_pred HHHHHh
Confidence 988765
No 8
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=7.6e-47 Score=356.04 Aligned_cols=301 Identities=26% Similarity=0.349 Sum_probs=255.1
Q ss_pred CCCCcEEEEccceeecccCCCCCCcc----CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCC
Q 016868 58 RESPLVVCFGEMLIDFVPTVSGLSLA----ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENN 133 (381)
Q Consensus 58 ~~~~~vlviG~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~g 133 (381)
..+++|+|+|.+++|++..+++.+.. ....+...+||.+.|+|++|++||.++.++|.||+|.+|+.+++.|++.|
T Consensus 13 ~~~~~vlviG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~i~~~l~~~G 92 (326)
T PTZ00292 13 EAEPDVVVVGSSNTDLIGYVDRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKNFKRNG 92 (326)
T ss_pred CCCCCEEEEccceeeEEEecCCCCCCCCceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHHHHHHHHHcC
Confidence 44578999999999999988876554 23345788999999999999999999999999999999999999999999
Q ss_pred CCCCCeeecCCCCceEEEEEec-CCCCceEEEecCCCccccCChhccch--hhcCC-ccEEEEccccccCchhHHHHHHH
Q 016868 134 VNGAGMRFDPGARTALAFVTLR-SDGEREFMFYRNPSADMLLQEAELDL--SLITK-AKIFHYGSISLITEPCKSAHIAA 209 (381)
Q Consensus 134 i~~~~v~~~~~~~t~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~l~~--~~i~~-~~~~~~~~~~~~~~~~~~~~~~~ 209 (381)
|+++++...++.+|++++++++ .+|++++.++ ++++..++++.++. ..+.. ++++++.+ ..+.+...++
T Consensus 93 I~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~ 165 (326)
T PTZ00292 93 VNTSFVSRTENSSTGLAMIFVDTKTGNNEIVII--PGANNALTPQMVDAQTDNIQNICKYLICQN-----EIPLETTLDA 165 (326)
T ss_pred CChhhEEEcCCCCCcEEEEEEeCCCCceEEEEe--CCccccCCHHHHHHHHHHhhhhCCEEEECC-----CCCHHHHHHH
Confidence 9999998888889999999998 7899988876 44555677766653 34566 88887653 2345677788
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCCh---HHHHHHHHhcCCCEEEE
Q 016868 210 AKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYD---DAVVYKLFHANLKLLLV 286 (381)
Q Consensus 210 l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~---~~~~~~l~~~g~~~vvv 286 (381)
++.++++|+++++|++.+...|. .+.+.++++++|++++|++|++.+++....+. .++.+.+.+.+++.|||
T Consensus 166 ~~~a~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvv 240 (326)
T PTZ00292 166 LKEAKERGCYTVFNPAPAPKLAE-----VEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQLGVENVII 240 (326)
T ss_pred HHHHHHcCCEEEEECCCCccccc-----cccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHHHHcCCCeEEE
Confidence 99999999999999986554332 24677888999999999999999998654332 24556777889999999
Q ss_pred EecCCceEEEeCCc-eEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 016868 287 TEGPDGCRYYTKDF-SGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPA 365 (381)
Q Consensus 287 t~G~~G~~~~~~~~-~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~ 365 (381)
|+|++|++++.+++ .+++|+++++++||+||||+|+|||++++++|++ +++|+++|+++|++++++.|+...
T Consensus 241 T~G~~Ga~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------~~~al~~a~a~Aa~~v~~~G~~~~ 313 (326)
T PTZ00292 241 TLGANGCLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGSMAYFMSRGKD-------LKESCKRANRIAAISVTRHGTQSS 313 (326)
T ss_pred EeCCCcEEEEeCCCceEEccCCccccCCCcchHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcCCCCcccc
Confidence 99999999998764 4889999999999999999999999999999999 999999999999999999999988
Q ss_pred CCCHHHHHHHHh
Q 016868 366 LPTREAVLNAIH 377 (381)
Q Consensus 366 ~~~~~~v~~~l~ 377 (381)
+|+.+++++.++
T Consensus 314 ~~~~~~~~~~~~ 325 (326)
T PTZ00292 314 YPHPSELPADVK 325 (326)
T ss_pred CCCHHHHHHHhc
Confidence 899999988775
No 9
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.2e-46 Score=363.19 Aligned_cols=306 Identities=23% Similarity=0.243 Sum_probs=254.2
Q ss_pred CCCCcEEEEccceeecccCCCC-------CCccC-----------------CCCccccCCChHHHHHHHHHHcC------
Q 016868 58 RESPLVVCFGEMLIDFVPTVSG-------LSLAE-----------------SPAFKKAPGGAPANVAVGIARLG------ 107 (381)
Q Consensus 58 ~~~~~vlviG~~~iD~~~~~~~-------~~~~~-----------------~~~~~~~~GG~~~NvA~~la~LG------ 107 (381)
.+.++|+++|++++|++..++. .|... ...+...+||++.|+|++|+|||
T Consensus 67 ~~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~~~N~AvalarLG~~~~~~ 146 (426)
T PLN02813 67 PERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGSLSNTLVALARLGSQSAAG 146 (426)
T ss_pred CCcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcHHHHHHHHHHHhccccccC
Confidence 3558999999999999988877 55432 23467889999999999999999
Q ss_pred --CceEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcC
Q 016868 108 --GSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLIT 185 (381)
Q Consensus 108 --~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~ 185 (381)
.+|.++|.||+|.+|+++++.|++.||++.++.+. +.+|+.++++++++|+|+++.++ +++..++.+++..+.++
T Consensus 147 ~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~-~~~Tg~~~ilv~~~gertii~~~--Ga~~~l~~~~~~~~~i~ 223 (426)
T PLN02813 147 PALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVK-DGTTGTVIVLTTPDAQRTMLSYQ--GTSSTVNYDSCLASAIS 223 (426)
T ss_pred CCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecC-CCCceEEEEEEcCCCCceeeecc--CchhhCCccccCHHHHh
Confidence 79999999999999999999999999999987654 55899999999999999998874 44445666566567789
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHH-HHHHHHhhhCCEEecCHHHHhhccCC
Q 016868 186 KAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAR-EGILSIWETADIIKISEEEISFLTQG 264 (381)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~-~~~~~~l~~~dvl~~N~~E~~~l~~~ 264 (381)
+++++|+.++.+..+...+.+.++++.++++|+++++|+..... ....+ .....+++++|++++|++|++.|++.
T Consensus 224 ~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~----~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~ 299 (426)
T PLN02813 224 KSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSC----IERHRDDFWDVMGNYADILFANSDEARALCGL 299 (426)
T ss_pred cCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcch----hhhhHHHHHHHHHhcCCEEEeCHHHHHHHhCC
Confidence 99999998865433334567888999999999999999863211 01112 23345568999999999999999986
Q ss_pred CCC-ChHHHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCC-ccccchHHH
Q 016868 265 EDP-YDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDF-SLLQKEDQL 342 (381)
Q Consensus 265 ~~~-~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~-~~~~~~~~l 342 (381)
... +.+++.+.+ ..+++.||||+|++|++++.+++.+++|++++++||||||||+|+|||++++++|+ + +
T Consensus 300 ~~~~~~~~a~~~L-~~~~~~VVVT~G~~Ga~~~~~~~~~~~pa~~v~vVDTtGAGDAF~Agfl~~l~~G~~~-------l 371 (426)
T PLN02813 300 GSEESPESATRYL-SHFCPLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGILYGLLRGVSD-------L 371 (426)
T ss_pred CCCCCHHHHHHHH-HcCCCEEEEEeCCCCeEEEECCEEEEeCCCCCCcccCCChHHHHHHHHHHHHHcCCCC-------H
Confidence 432 234555555 46899999999999999999888999999999999999999999999999999999 8 9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHhC
Q 016868 343 RDALRFANACGALTVMERGAIPALPTREAVLNAIHA 378 (381)
Q Consensus 343 ~~al~~A~~~Aa~~~~~~G~~~~~~~~~~v~~~l~~ 378 (381)
++|+++|+++|++++++.|+..++|+.+++.+.++.
T Consensus 372 ~~al~~A~a~Aa~~v~~~Ga~~~~~~~~e~~~~~~~ 407 (426)
T PLN02813 372 RGMGELAARVAATVVGQQGTRLRVEDAVELAESFAL 407 (426)
T ss_pred HHHHHHHHHHHHHHHcccCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887754
No 10
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=1.7e-46 Score=348.91 Aligned_cols=294 Identities=56% Similarity=0.897 Sum_probs=248.6
Q ss_pred cEEEEccceeecccCCCCCCccCCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeee
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLAESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRF 141 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~ 141 (381)
+|+|+|++++|++...++. .......+||++.|+|.++++||.++.++|.+|+|.+|+++++.|++.||+++++.+
T Consensus 1 ~ilviG~~~~D~~~~~~~~----~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~ 76 (295)
T cd01167 1 KVVCFGEALIDFIPEGSGA----PETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLETLKEAGVDTRGIQF 76 (295)
T ss_pred CEEEEcceeEEEecCCCCC----CccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHHHHHHcCCCchheee
Confidence 5999999999999876543 445678899999999999999999999999999999999999999999999999987
Q ss_pred cCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEE
Q 016868 142 DPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLS 221 (381)
Q Consensus 142 ~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~ 221 (381)
.++.+|+.++++++++|+|++.+++..........+ +..+.++++++++++++.+.++...+...++++.+++.+++++
T Consensus 77 ~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ 155 (295)
T cd01167 77 DPAAPTTLAFVTLDADGERSFEFYRGPAADLLLDTE-LNPDLLSEADILHFGSIALASEPSRSALLELLEAAKKAGVLIS 155 (295)
T ss_pred cCCCCceEEEEEECCCCCEeEEeecCCcHhhhcCcc-CChhHhccCCEEEEechhhccchHHHHHHHHHHHHHHcCCEEE
Confidence 888899999999988899998886443322212221 3446788999999988755555556778889999999999999
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEEEEecCCceEEEeCCce
Q 016868 222 YDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFS 301 (381)
Q Consensus 222 ~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~ 301 (381)
+|++.+..+|.......+.+.++++++|++++|++|++.+++.... +++.+.+.+.+++.+|||+|++|++++++++.
T Consensus 156 ~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~--~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~ 233 (295)
T cd01167 156 FDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGEEDP--EEIAALLLLFGLKLVLVTRGADGALLYTKGGV 233 (295)
T ss_pred EcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCCH--HHHHHHHhhcCCCEEEEecCCcceEEEECCcc
Confidence 9998777677665556777888999999999999999999987543 45667788899999999999999999998888
Q ss_pred EEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCC
Q 016868 302 GRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGA 362 (381)
Q Consensus 302 ~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~ 362 (381)
+++|+++++++|||||||+|+|||+++|++|+...-+++++++|+++|+++|++++++.|+
T Consensus 234 ~~~~a~~~~vvDttGAGD~f~a~~~~~l~~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~G~ 294 (295)
T cd01167 234 GEVPGIPVEVVDTTGAGDAFVAGLLAQLLSRGLLALDEDELAEALRFANAVGALTCTKAGA 294 (295)
T ss_pred eeeCCCCcceeeCCCccHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHhhHHHhcccCC
Confidence 9999999999999999999999999999999800000112999999999999999999986
No 11
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-45 Score=345.78 Aligned_cols=302 Identities=41% Similarity=0.571 Sum_probs=261.4
Q ss_pred cEEEEccceeecccC-CCCCCcc----CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCC
Q 016868 62 LVVCFGEMLIDFVPT-VSGLSLA----ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNG 136 (381)
Q Consensus 62 ~vlviG~~~iD~~~~-~~~~~~~----~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~ 136 (381)
+|+++|++++|++.. .+..|.. .....++.+||++.|+|+++++||.++.++|.||+|.+|+++++.|++.||++
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~~l~~~GVd~ 80 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLPEPGETVLGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLEELRKEGVDT 80 (311)
T ss_pred CEEEECchhhheehhhccCCCCCcccccccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHHHHHHcCCcc
Confidence 489999999999986 3333332 12236788999999999999999999999999999999999999999999999
Q ss_pred CCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHC
Q 016868 137 AGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDA 216 (381)
Q Consensus 137 ~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 216 (381)
+++....+.+|+.+++.++++|+|.+.+++.. +...++++.+++..+..++++|++++.+.... +...++++.+++.
T Consensus 81 ~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~a~~~ 157 (311)
T COG0524 81 SHVVTDEGATTGLALILVDEDGERTFVFYRGA-AALLLTPEDLDEDELAGADVLHISGIQLEIPP--EALLAALELAKAA 157 (311)
T ss_pred ceEEEcCCCcceEEEEEEcCCCceeEEEECCc-ccccCChHHcChHHHhhcCeeeEEEeecCCCh--HHHHHHHHHHHHc
Confidence 99999988899999999999999999998654 56668888887677889999999987653332 7888999999999
Q ss_pred CCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEEEEecCCceEEE
Q 016868 217 GVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYY 296 (381)
Q Consensus 217 g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~ 296 (381)
|.++++|+++++..|. ++.+.++++++|++++|++|++.+++. ..+..+....++..+++.+|||+|++|++++
T Consensus 158 g~~v~~d~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~-~~~~~~~~~~~~~~~~~~vvvt~G~~Ga~~~ 231 (311)
T COG0524 158 GVTVSFDLNPRPALWD-----RELLEELLALADILFPNEEEAELLTGL-EEDAEAAAALLLAKGVKTVVVTLGAEGAVVF 231 (311)
T ss_pred CCeEEEecCCCccccc-----hhhHHHHHhhCCEEeCCHHHHHHHhCC-CccHHHHHHHHhhcCCCEEEEEeCCCcEEEE
Confidence 9999999999988775 567778899999999999999999987 2223344466778999999999999999999
Q ss_pred eCCc---eEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHH
Q 016868 297 TKDF---SGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAVL 373 (381)
Q Consensus 297 ~~~~---~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~~~v~ 373 (381)
+.+. ....+++++++||||||||+|.|||+++|++|++ +++|+++|+++|++++++.|+...+|+.++++
T Consensus 232 ~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~-------~~~a~~~a~a~aa~~~~~~g~~~~~p~~~~~~ 304 (311)
T COG0524 232 TGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKS-------LEEALRFANAAAALAVTRPGARPSLPTREEVE 304 (311)
T ss_pred eCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHhhhhhccCCCCCCCCCHHHHH
Confidence 9864 3333477789999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHhCC
Q 016868 374 NAIHAP 379 (381)
Q Consensus 374 ~~l~~~ 379 (381)
.++++.
T Consensus 305 ~~~~~~ 310 (311)
T COG0524 305 AFLEEL 310 (311)
T ss_pred HHHhcc
Confidence 988753
No 12
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=4.2e-46 Score=348.94 Aligned_cols=288 Identities=28% Similarity=0.372 Sum_probs=246.5
Q ss_pred CcEEEEccceeecccCCCCCCcc----C------C-----------CCccccCCChHHHHHHHHHHcCCceEEEeecCCC
Q 016868 61 PLVVCFGEMLIDFVPTVSGLSLA----E------S-----------PAFKKAPGGAPANVAVGIARLGGSSAFIGKVGAD 119 (381)
Q Consensus 61 ~~vlviG~~~iD~~~~~~~~~~~----~------~-----------~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D 119 (381)
.+|+|+|++++|++..++..|.. + . ......+||++.|+|.+|++||.++.++|.+|+|
T Consensus 2 ~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~D 81 (312)
T cd01168 2 YDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAALGGSAAFIGRVGDD 81 (312)
T ss_pred ceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHHhcCCeEEEEEeccC
Confidence 46999999999999988877632 0 1 1357889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccC
Q 016868 120 EFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLIT 199 (381)
Q Consensus 120 ~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~ 199 (381)
.+|+++++.|+++||+++++... +.+|+.++++++++|+|++..+ .+++..++.+++..+.+++++++|++++.+..
T Consensus 82 ~~g~~i~~~l~~~GV~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~ 158 (312)
T cd01168 82 KLGDFLLKDLRAAGVDTRYQVQP-DGPTGTCAVLVTPDAERTMCTY--LGAANELSPDDLDWSLLAKAKYLYLEGYLLTV 158 (312)
T ss_pred hhHHHHHHHHHHCCCccccccCC-CCCceEEEEEEcCCCceeeecc--cchhhcCChhHCCHHHHccCCEEEEEEEecCC
Confidence 99999999999999999988764 5789999999999999988765 45666688888877788999999998864322
Q ss_pred chhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhc
Q 016868 200 EPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHA 279 (381)
Q Consensus 200 ~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~ 279 (381)
+.+....+++.+++.|+++++|++... .....++.+.++++++|++++|++|++.+++....+..++++.+++.
T Consensus 159 --~~~~~~~~~~~a~~~g~~v~~d~~~~~----~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~~~~~a~~l~~~ 232 (312)
T cd01168 159 --PPEAILLAAEHAKENGVKIALNLSAPF----IVQRFKEALLELLPYVDILFGNEEEAEALAEAETTDDLEAALKLLAL 232 (312)
T ss_pred --CHHHHHHHHHHHHHcCCEEEEeCCcHH----HHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCCCCChHHHHHHHHhc
Confidence 237788889999999999999996311 11234556778899999999999999999986333345678888899
Q ss_pred CCCEEEEEecCCceEEEeCCceEEEcccc-ccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhh
Q 016868 280 NLKLLLVTEGPDGCRYYTKDFSGRVQGLK-VEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVM 358 (381)
Q Consensus 280 g~~~vvvt~G~~G~~~~~~~~~~~~~~~~-v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~ 358 (381)
+++.||||+|++|++++++++.+++|+++ +++||||||||+|+|||++++++|++ +++|+++|+++|+++++
T Consensus 233 g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~~g~~-------~~~a~~~a~~~Aa~~v~ 305 (312)
T cd01168 233 RCRIVVITQGAKGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQGEP-------LEECIRLGSYAAAEVIQ 305 (312)
T ss_pred CCCEEEEecCCCCeEEEECCEEEeCCCCCCCCcccCCchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHh
Confidence 99999999999999999988888999998 89999999999999999999999999 99999999999999999
Q ss_pred hcCCCC
Q 016868 359 ERGAIP 364 (381)
Q Consensus 359 ~~G~~~ 364 (381)
+.|+.+
T Consensus 306 ~~G~~~ 311 (312)
T cd01168 306 QLGPRL 311 (312)
T ss_pred ccCCCC
Confidence 999763
No 13
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=1.2e-45 Score=353.76 Aligned_cols=330 Identities=19% Similarity=0.220 Sum_probs=259.1
Q ss_pred CCCccccC----CCCcccccccccCCCCCCCCccCCCCCcEEEEccceeecccCCCCCCc-------cC-----------
Q 016868 27 HPTIKASS----PLPRLNVRVKALPGDGLSETKETRESPLVVCFGEMLIDFVPTVSGLSL-------AE----------- 84 (381)
Q Consensus 27 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviG~~~iD~~~~~~~~~~-------~~----------- 84 (381)
+|+.+.|. .+.+++++.+-.| -+++ +..+|+++|+.++|+...++...+ ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~ 75 (434)
T PRK15074 3 FPGQRKSKHYFPVNARDPLLQQIQP---ENET----SRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEA 75 (434)
T ss_pred CCcccccccccccCCCCcccccccc---ccCC----CCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHH
Confidence 45555432 5678899998888 3343 335899999999999977653211 10
Q ss_pred ------CCC--ccccCCChHHHHHHHHHHcC-CceEEEeecCCC-hHHHHHHHHHH--HCCCCCCCeeecCCCCceEEEE
Q 016868 85 ------SPA--FKKAPGGAPANVAVGIARLG-GSSAFIGKVGAD-EFGYMLADILK--ENNVNGAGMRFDPGARTALAFV 152 (381)
Q Consensus 85 ------~~~--~~~~~GG~~~NvA~~la~LG-~~v~li~~vG~D-~~g~~i~~~l~--~~gi~~~~v~~~~~~~t~~~~~ 152 (381)
... ....+||++.|+|++|++|| .++.++|.||+| .+|+++++.|+ +.||+++++...+ .+|+.+++
T Consensus 76 l~~~l~~~~~~~~~~~GGsaaNtA~~lArLGG~~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~-~~TG~~~V 154 (434)
T PRK15074 76 LYQELKQNNLITHEFAGGTIGNTLHNYSVLADDRSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVD-GPIGRCFT 154 (434)
T ss_pred HHHHHhhccccccccCCCHHHHHHHHHHHcCCCCeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcC-CCCEEEEE
Confidence 001 35569999999999999996 999999999999 79999999997 6899999987654 48999999
Q ss_pred EecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEcccccc---CchhHHHHHHHHHHHHHCCCeEEEeCCCCCC
Q 016868 153 TLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLI---TEPCKSAHIAAAKAAKDAGVVLSYDPNLRLP 229 (381)
Q Consensus 153 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~ 229 (381)
+++++|+|++..+ .+++..+++++++.+.+++++++|++++.+. .+...+...++++.+++.|++|++|++.+..
T Consensus 155 lV~~dGeRt~~t~--~GA~~~Lt~edld~~~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~ 232 (434)
T PRK15074 155 LISEDGERTFAIS--PGHMNQLRPESIPEDVIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFV 232 (434)
T ss_pred EECCCCCEEEEEe--cChhhcCChhHCCHhHhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhh
Confidence 9999999999987 4677788998888888999999999998654 2344678889999999999999999987654
Q ss_pred CCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEEEEecCCceEEEeCC-------ce-
Q 016868 230 LWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKD-------FS- 301 (381)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~-------~~- 301 (381)
++...+.+. ..+++++|++++|++|++.|++..+ .+++++.+.+ +++.||||+|++|++++..+ ..
T Consensus 233 v~~~~~~~~---e~l~~~vDILf~NeeEa~~LtG~~d--~eea~~~L~~-~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~ 306 (434)
T PRK15074 233 IEDNPQWWQ---EFLKEHVSILAMNEDEAEALTGESD--PLLASDKALD-WVDLVLCTAGPIGLYMAGYTEDEAKRETQH 306 (434)
T ss_pred ccccHHHHH---HHHHhcCCEEEcCHHHHHHHhCCCC--HHHHHHHHHc-CCCEEEEEECCCCEEEEecccccccCceee
Confidence 443332222 3456799999999999999998643 4567777764 58999999999999997522 11
Q ss_pred -------------------------------EEEccc---cccccCCCCccHHHHHHHHHHHHcCC-cc-----------
Q 016868 302 -------------------------------GRVQGL---KVEAVDATGAGDAFVAGILSQLSTDF-SL----------- 335 (381)
Q Consensus 302 -------------------------------~~~~~~---~v~vvdttGAGDaF~ag~l~~l~~g~-~~----------- 335 (381)
.++|++ ++++||||||||+|+|||+|+|++|+ +.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDttGAGD~f~~gfl~~l~~g~~~~~~~~~~~~~~~ 386 (434)
T PRK15074 307 PLLPGAIAEFNRYEFSRAMRKKDCQNPLRVYSHIAPYMGGPEKIMNTNGAGDGALSALLHDITANSYHRSNVPNSSKHKR 386 (434)
T ss_pred eccccccccccchhcccchhccccccccccccccCcccCCCCcceeCCCcHHHHHHHHHHHHHCCCcccccccccccccc
Confidence 278888 78999999999999999999999997 00
Q ss_pred -ccchHHHHHHHHHHHHHHHHHhhhcCC--CCCCCCHHHH
Q 016868 336 -LQKEDQLRDALRFANACGALTVMERGA--IPALPTREAV 372 (381)
Q Consensus 336 -~~~~~~l~~al~~A~~~Aa~~~~~~G~--~~~~~~~~~v 372 (381)
.....++.+|+++|+++|+..+++.|+ .+++|+.++-
T Consensus 387 ~~~~~~~l~~~~~~~~~~a~~vi~~~G~~~~~~~p~~~~~ 426 (434)
T PRK15074 387 TYLTYSSLAQVCKYANRVSYEVLNQHSPRLSRGLPEREDS 426 (434)
T ss_pred cccccCCHHHHHHHHHHHHHHHHhhcCCCCCCCCCCccch
Confidence 001113999999999999999999999 5567776654
No 14
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=4e-45 Score=339.52 Aligned_cols=291 Identities=39% Similarity=0.582 Sum_probs=246.5
Q ss_pred cEEEEccceeecccCCCCCCccCCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeee
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLAESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRF 141 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~ 141 (381)
+|+|+|++++|++...++.. ..+......+||++.|+|.+|++||.++.++|.+|+|.+|+++++.|++.||+++++.+
T Consensus 1 ~i~~iG~~~iD~~~~~~~~~-~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~~l~~~gi~~~~~~~ 79 (294)
T cd01166 1 DVVTIGEVMVDLSPPGGGRL-EQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILAELRREGVDTSHVRV 79 (294)
T ss_pred CeEEechhheeeecCCCCcc-chhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHcCCCCceEEE
Confidence 58999999999998765433 34556778899999999999999999999999999999999999999999999999988
Q ss_pred cCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEcccccc-CchhHHHHHHHHHHHHHCCCeE
Q 016868 142 DPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLI-TEPCKSAHIAAAKAAKDAGVVL 220 (381)
Q Consensus 142 ~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~l~~a~~~g~~v 220 (381)
.++.+|+.+++.++.+|+|++.+++...+...++.++++...+++++++|++++.+. .+.+.+.+.++++.+++.++++
T Consensus 80 ~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (294)
T cd01166 80 DPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADHLHLSGITLALSESAREALLEALEAAKARGVTV 159 (294)
T ss_pred eCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCEEEEcCcchhhCHHHHHHHHHHHHHHHHcCCEE
Confidence 888899999999988899998887655555566777766667889999999986532 2222477888999999999999
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCC-ChHHHHHHHHhcCCCEEEEEecCCceEEEeCC
Q 016868 221 SYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDP-YDDAVVYKLFHANLKLLLVTEGPDGCRYYTKD 299 (381)
Q Consensus 221 ~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~-~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 299 (381)
++||+.+..+|. .+...+.+..+++++|++++|+.|++.+++.... +..+.++.+ +.|++.|+||+|++|+++++++
T Consensus 160 ~~D~~~~~~~~~-~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~l-~~g~~~viit~G~~G~~~~~~~ 237 (294)
T cd01166 160 SFDLNYRPKLWS-AEEAREALEELLPYVDIVLPSEEEAEALLGDEDPTDAAERALAL-ALGVKAVVVKLGAEGALVYTGG 237 (294)
T ss_pred EECCCCcchhcC-hHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCchhHHHHHHhh-cCCccEEEEEEcCCceEEEECC
Confidence 999986654442 2344566778899999999999999999987542 112333444 5899999999999999999988
Q ss_pred ceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCC
Q 016868 300 FSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGA 362 (381)
Q Consensus 300 ~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~ 362 (381)
+.+++|+++++++||+||||+|+|||++++++|++ +++|+++|+++|+.++++.|+
T Consensus 238 ~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~i~~~G~ 293 (294)
T cd01166 238 GRVFVPAYPVEVVDTTGAGDAFAAGFLAGLLEGWD-------LEEALRFANAAAALVVTRPGD 293 (294)
T ss_pred ceEEeCCCCcccccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhcCCC
Confidence 88899999999999999999999999999999999 999999999999999999985
No 15
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=3.6e-45 Score=338.97 Aligned_cols=283 Identities=24% Similarity=0.339 Sum_probs=236.5
Q ss_pred cEEEEccceeecccCCCCCCcc----CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCC
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLA----ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGA 137 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~ 137 (381)
+|+|||++++|++..++..|.. ....+...+|| +.|+|++|++||.++.++|.+|+|.+|+++++.|++.||+++
T Consensus 1 ~i~~iG~~~~D~i~~~~~~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 79 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDKLPASGGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQAMRDEGIEIL 79 (289)
T ss_pred CeEEEcceeEEEEeecccCCCCCCccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHHHHHHcCCccc
Confidence 5899999999999888866543 24567899999 999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCch-hHHHHHHHHHHHHHC
Q 016868 138 GMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEP-CKSAHIAAAKAAKDA 216 (381)
Q Consensus 138 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~ 216 (381)
++... +..|+.++++++++|+|++..++. .+..++++.++...+.+++++|++++.+.... ....+.++++.++ .
T Consensus 80 ~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 155 (289)
T cd01944 80 LPPRG-GDDGGCLVALVEPDGERSFISISG--AEQDWSTEWFATLTVAPYDYVYLSGYTLASENASKVILLEWLEALP-A 155 (289)
T ss_pred ccccc-CCCCeEEEEEEcCCCceEEEEeCC--ccCCCCHHHhccccCCCCCEEEEeCccccCcchhHHHHHHHHHhcc-C
Confidence 88775 568888888888899999887643 44445666655445778999999987553332 4556666666644 5
Q ss_pred CCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEEEEecCCceEEE
Q 016868 217 GVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYY 296 (381)
Q Consensus 217 g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~ 296 (381)
+.++++|++++...|. .+.+.++++++|++++|++|++.|++...++....++.+.+.+++.|+||+|++|++++
T Consensus 156 ~~~v~~D~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~vvvt~G~~Ga~~~ 230 (289)
T cd01944 156 GTTLVFDPGPRISDIP-----DTILQALMAKRPIWSCNREEAAIFAERGDPAAEASALRIYAKTAAPVVVRLGSNGAWIR 230 (289)
T ss_pred CCEEEEcCcccccccC-----HHHHHHHHhcCCEEccCHHHHHHHhCCCCcchHHHHHHHHhccCCeEEEEECCCcEEEE
Confidence 7899999987765543 34577888999999999999999999765544444677888899999999999999999
Q ss_pred eC-CceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcC
Q 016868 297 TK-DFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERG 361 (381)
Q Consensus 297 ~~-~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G 361 (381)
.+ ++.+++|+++++++||+||||+|+|||++++++|++ +++|+++|+++|++++++.|
T Consensus 231 ~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~~~~g~~-------~~~a~~~a~a~aa~~~~~~G 289 (289)
T cd01944 231 LPDGNTHIIPGFKVKAVDTIGAGDTHAGGMLAGLAKGMS-------LADAVLLANAAAAIVVTRSG 289 (289)
T ss_pred ecCCCeEEecCCCCCCccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhhhccCC
Confidence 84 566788989999999999999999999999999999 99999999999999999876
No 16
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=4.3e-45 Score=339.00 Aligned_cols=283 Identities=34% Similarity=0.469 Sum_probs=243.3
Q ss_pred cEEEEccceeecccCCCCCCcc----CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCC
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLA----ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGA 137 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~ 137 (381)
+|+|+|++++|++...++.|.. ....+..++||++.|+|.+|++||.++.++|.+|+|.+|+++++.|+++||+++
T Consensus 1 ~il~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 80 (292)
T cd01174 1 KVVVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLENLREEGIDVS 80 (292)
T ss_pred CEEEEeeceeEEEEEecCCCCCCCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHHHHHHcCCCce
Confidence 5999999999999887765544 234567899999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccch--hhcCCccEEEEccccccCchhHHHHHHHHHHHHH
Q 016868 138 GMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDL--SLITKAKIFHYGSISLITEPCKSAHIAAAKAAKD 215 (381)
Q Consensus 138 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 215 (381)
++...++.+|+.++++++.+|+|++..+. ++...++++.++. +.+++++++++++ +.+.+.+..+++.+++
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~~~~~a~~ 153 (292)
T cd01174 81 YVEVVVGAPTGTAVITVDESGENRIVVVP--GANGELTPADVDAALELIAAADVLLLQL-----EIPLETVLAALRAARR 153 (292)
T ss_pred EEEEcCCCCceeEEEEEcCCCceEEEEeC--CCCCCCCHHHHHHHHHhcccCCEEEEeC-----CCCHHHHHHHHHHHHh
Confidence 99888888999999999988999988763 4444556655543 5678999998864 2345677888999999
Q ss_pred CCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCCh---HHHHHHHHhcCCCEEEEEecCCc
Q 016868 216 AGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYD---DAVVYKLFHANLKLLLVTEGPDG 292 (381)
Q Consensus 216 ~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~---~~~~~~l~~~g~~~vvvt~G~~G 292 (381)
+|+++++|+..... ...++++++|++++|++|++.+++....+. .++++.+.+.|++.|+||+|++|
T Consensus 154 ~g~~v~~D~~~~~~----------~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G 223 (292)
T cd01174 154 AGVTVILNPAPARP----------LPAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLAKGVKNVIVTLGAKG 223 (292)
T ss_pred cCCEEEEeCCCcCc----------CcHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 99999999974322 124678899999999999999998765543 34567888899999999999999
Q ss_pred eEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 016868 293 CRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPT 368 (381)
Q Consensus 293 ~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~ 368 (381)
++++++++.+++|+++++++||+||||+|+|||++++++|++ +++|+++|+++|++++++.|+..++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~vdt~GaGD~F~ag~l~~l~~g~~-------~~~al~~a~~~Aa~~~~~~G~~~~~~~ 292 (292)
T cd01174 224 ALLASGGEVEHVPAFKVKAVDTTGAGDTFIGALAAALARGLS-------LEEAIRFANAAAALSVTRPGAQPSIPT 292 (292)
T ss_pred eEEEeCCceEEecCCCcccCCCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcCCCCCCCC
Confidence 999998888899999999999999999999999999999999 999999999999999999999988774
No 17
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=8e-45 Score=340.21 Aligned_cols=298 Identities=22% Similarity=0.249 Sum_probs=243.3
Q ss_pred CCCCcEEEEccceeecccCCCCCCcc---CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCC
Q 016868 58 RESPLVVCFGEMLIDFVPTVSGLSLA---ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNV 134 (381)
Q Consensus 58 ~~~~~vlviG~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi 134 (381)
.++++|+|+|++++|++...+..+.. .+......+||++.|+|.+|++||.++.++|.||+|.+|+++++.|++.||
T Consensus 2 ~~~~~i~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i~~~l~~~gV 81 (313)
T PRK09850 2 REKDYVVIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSGV 81 (313)
T ss_pred CCCCcEEEECcEEEeeeccCCCcCcCCCCCceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHHcCC
Confidence 45579999999999999765432221 234467889999999999999999999999999999999999999999999
Q ss_pred CCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccc--hhhcCCccEEEEccccccCchhHHHHHHHHHH
Q 016868 135 NGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELD--LSLITKAKIFHYGSISLITEPCKSAHIAAAKA 212 (381)
Q Consensus 135 ~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (381)
+++++...++.+|++++++++++|++.+.+. .+++...++.+.+. .+.+++++++++++. .+.+....+++.
T Consensus 82 d~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~ 155 (313)
T PRK09850 82 YVDKCLIVPGENTSSYLSLLDNTGEMLVAIN-DMNISNAITAEYLAQHREFIQRAKVIVADCN-----ISEEALAWILDN 155 (313)
T ss_pred CchheeecCCCCceEEEEEecCCCCEEEEec-CchHhhhCCHHHHHHHHHHHhcCCEEEEeCC-----CCHHHHHHHHHh
Confidence 9999888888889999999999999988764 23444445554443 245788999987642 234555555554
Q ss_pred HHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCC---hHHHHHHHHhcCCCEEEEEec
Q 016868 213 AKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPY---DDAVVYKLFHANLKLLLVTEG 289 (381)
Q Consensus 213 a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~---~~~~~~~l~~~g~~~vvvt~G 289 (381)
+ .++++++||+.. |. ...+.++++++|++++|++|++.|++....+ .+++++.+.+.|++.||||+|
T Consensus 156 ~--~g~~v~~D~~~~---~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G 225 (313)
T PRK09850 156 A--ANVPVFVDPVSA---WK-----CVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLNRLVLSMG 225 (313)
T ss_pred c--cCCCEEEEcCCH---HH-----HHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 3 588999999631 21 1345677889999999999999999864332 245667787899999999999
Q ss_pred CCceEEEeCC-ceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 016868 290 PDGCRYYTKD-FSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPT 368 (381)
Q Consensus 290 ~~G~~~~~~~-~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~ 368 (381)
++|++++.++ +..++|++++++||||||||+|+|||++++++|++ +++|+++|+++|++++++.+.....|+
T Consensus 226 ~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~~g~~-------~~eal~~a~a~aa~~~~~~~~~~~~~~ 298 (313)
T PRK09850 226 GDGVYYSDISGESGWSAPIKTNVINVTGAGDAMMAGLASCWVDGMP-------FAESVRFAQGCSSMALSCEYTNNPDLS 298 (313)
T ss_pred CceEEEEcCCCCeEecCCCCcccccCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCCCCcccC
Confidence 9999999854 55678888899999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 016868 369 REAVLNAIHA 378 (381)
Q Consensus 369 ~~~v~~~l~~ 378 (381)
+++|++++++
T Consensus 299 ~~~~~~~~~~ 308 (313)
T PRK09850 299 IANVISLVEN 308 (313)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 18
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=5.1e-45 Score=347.96 Aligned_cols=314 Identities=19% Similarity=0.192 Sum_probs=250.0
Q ss_pred cCCCCcccccccccCCCCCCCCccCCCCCcEEEEccceeecccCCC-CCCcc--CCCCccccCCChHHHHHHHHHHcCCc
Q 016868 33 SSPLPRLNVRVKALPGDGLSETKETRESPLVVCFGEMLIDFVPTVS-GLSLA--ESPAFKKAPGGAPANVAVGIARLGGS 109 (381)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviG~~~iD~~~~~~-~~~~~--~~~~~~~~~GG~~~NvA~~la~LG~~ 109 (381)
.++.+++.|++++|. +.+. ..|+|+|++++|++..++ ..|.. .+..+...+||++.|+|++++|||.+
T Consensus 39 ~~L~~~g~i~~~~~~---l~~~------~~v~viG~~~vD~~~~~~~~~p~~~~~~~~~~~~~GG~~~NvA~~larLG~~ 109 (362)
T PRK09954 39 MDLMRKGRIKGKGYI---LTEQ------EYCVVVGAINMDIRGMADIRYPQAASHPGTIHCSAGGVGRNIAHNLALLGRD 109 (362)
T ss_pred HHHHHCCCcCCcEEE---EcCC------ccEEEEEEEEEEEEEeeCCcCcCCCCCCceEEEecCcHHHHHHHHHHHcCCC
Confidence 346788999999998 5444 489999999999987765 33332 34567888999999999999999999
Q ss_pred eEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccch--hhcCCc
Q 016868 110 SAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDL--SLITKA 187 (381)
Q Consensus 110 v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~i~~~ 187 (381)
+.++|.||+|.+|+++++.|++.||+++++...++.+|+.++++.++++++.+ ...++.....++++.+.. +.+..+
T Consensus 110 v~~ig~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (362)
T PRK09954 110 VHLLSAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQDETVL-AINDTHILQQLTPQLLNGSRDLIRHA 188 (362)
T ss_pred eEEEEEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCCCEEE-EEcCchhhhcCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998888889999888876655544 433444444566654442 446778
Q ss_pred cEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCC
Q 016868 188 KIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDP 267 (381)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~ 267 (381)
+++++++- .+.+....+++.+ +++++++|+... .....+.++++++|++++|++|++.+++....
T Consensus 189 ~~v~~~~~-----~~~~~~~~~~~~a--~~~~v~~D~~~~--------~~~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~ 253 (362)
T PRK09954 189 GVVLADCN-----LTAEALEWVFTLA--DEIPVFVDTVSE--------FKAGKIKHWLAHIHTLKPTQPELEILWGQAIT 253 (362)
T ss_pred CEEEEECC-----CCHHHHHHHHHhC--CCCcEEEECCCH--------HHhhhhhhhhccccEEecCHHHHHHHcCCCCC
Confidence 88877642 2344555555554 478999998631 11234567899999999999999999987543
Q ss_pred C---hHHHHHHHHhcCCCEEEEEecCCceEEEeCC-ceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHH
Q 016868 268 Y---DDAVVYKLFHANLKLLLVTEGPDGCRYYTKD-FSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLR 343 (381)
Q Consensus 268 ~---~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~-~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~ 343 (381)
+ .+++++.+.+.|++.||||+|++|++++..+ +.+++|++++++||||||||+|+|||++++++|++ ++
T Consensus 254 ~~~~~~~~~~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag~l~~l~~g~~-------~~ 326 (362)
T PRK09954 254 SDADRNAAVNALHQQGVQQIFVYLPDESVFCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLEGYS-------FR 326 (362)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCccEEEEeCCCceEeccCCCcccccccchHHHHHHHHHHHHHcCCC-------HH
Confidence 2 2356678888999999999999999988755 46678888999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHhC
Q 016868 344 DALRFANACGALTVMERGAIPALPTREAVLNAIHA 378 (381)
Q Consensus 344 ~al~~A~~~Aa~~~~~~G~~~~~~~~~~v~~~l~~ 378 (381)
+|+++|+++|++++.+..+..+-.+.+.++++++.
T Consensus 327 eal~~a~a~Aal~~~s~~~~~~~~~~~~~~~~~~~ 361 (362)
T PRK09954 327 DSARFAMACAAISRASGSLNNPTLSADNALSLVPM 361 (362)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHhcc
Confidence 99999999999997766666566799999888753
No 19
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=4.1e-44 Score=339.70 Aligned_cols=290 Identities=21% Similarity=0.260 Sum_probs=237.6
Q ss_pred CCCCcEEEEccceeecccCCCC-----C-CccC------------------CCCccccCCChHHHHHHHHHHcC---C-c
Q 016868 58 RESPLVVCFGEMLIDFVPTVSG-----L-SLAE------------------SPAFKKAPGGAPANVAVGIARLG---G-S 109 (381)
Q Consensus 58 ~~~~~vlviG~~~iD~~~~~~~-----~-~~~~------------------~~~~~~~~GG~~~NvA~~la~LG---~-~ 109 (381)
+..++|+|+|++++|++..++. . |... ...+...+||++.|+|+++++|| . +
T Consensus 3 ~~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~~ 82 (345)
T PTZ00247 3 SAPKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKGF 82 (345)
T ss_pred CCCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCCc
Confidence 3457899999999999988774 1 2210 12347889999999999999885 5 9
Q ss_pred eEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccch----hhcC
Q 016868 110 SAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDL----SLIT 185 (381)
Q Consensus 110 v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~----~~i~ 185 (381)
|.++|.||+|.+|+++++.|+++||+++++. .++.+|+++++++++ |+|+++.+ .+++..+++++++. +.++
T Consensus 83 v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~-~~~~~Tg~~~i~v~~-~~r~~~~~--~ga~~~l~~~~i~~~~~~~~l~ 158 (345)
T PTZ00247 83 VCYVGCVGDDRFAEILKEAAEKDGVEMLFEY-TTKAPTGTCAVLVCG-KERSLVAN--LGAANHLSAEHMQSHAVQEAIK 158 (345)
T ss_pred EEEEEEeccchhHHHHHHHHHHcCCeeeccc-cCCCCcEEEEEEEcC-CCcccccC--cchhhcCChHHcCcHHHHHHHh
Confidence 9999999999999999999999999998875 567799999998874 78888765 45666788777764 3688
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCC
Q 016868 186 KAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGE 265 (381)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~ 265 (381)
+++++|++++.+. .+.+....+++.++++|+++++|++... + ....++.+.++++++|++++|++|++.|++..
T Consensus 159 ~~~~v~~~g~~~~--~~~~~~~~~~~~a~~~g~~v~~d~~~~~--~--~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~ 232 (345)
T PTZ00247 159 TAQLYYLEGFFLT--VSPNNVLQVAKHARESGKLFCLNLSAPF--I--SQFFFERLLQVLPYVDILFGNEEEAKTFAKAM 232 (345)
T ss_pred hCCEEEEEEEEec--ccHHHHHHHHHHHHHcCCEEEEECCcHH--H--HHHHHHHHHHHHhhCCEEEeCHHHHHHHhhcc
Confidence 9999999986432 2457888999999999999999985311 1 12234557789999999999999999999832
Q ss_pred ---CCChHHHHHHHHh------cCCCEEEEEecCCceEEEeCCceEEEccccc---cccCCCCccHHHHHHHHHHHHcCC
Q 016868 266 ---DPYDDAVVYKLFH------ANLKLLLVTEGPDGCRYYTKDFSGRVQGLKV---EAVDATGAGDAFVAGILSQLSTDF 333 (381)
Q Consensus 266 ---~~~~~~~~~~l~~------~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v---~vvdttGAGDaF~ag~l~~l~~g~ 333 (381)
..+.+++++.+.+ .+.+.||||+|++|++++++++.+++|++++ ++||||||||+|+|||+++|++|+
T Consensus 233 ~~~~~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~l~~g~ 312 (345)
T PTZ00247 233 KWDTEDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYANGK 312 (345)
T ss_pred CCCccCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHHHHHHHHHcCC
Confidence 1234566666653 2578999999999999999988888999887 599999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhcCCCC
Q 016868 334 SLLQKEDQLRDALRFANACGALTVMERGAIP 364 (381)
Q Consensus 334 ~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~ 364 (381)
+ +++|+++|+++|++++++.|+..
T Consensus 313 ~-------~~~al~~a~~aAa~~v~~~Ga~~ 336 (345)
T PTZ00247 313 D-------IDRCVEAGHYSAQVIIQHNGCTY 336 (345)
T ss_pred C-------HHHHHHHHHHHHHHHHhccCCCC
Confidence 9 99999999999999999999873
No 20
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=8.7e-44 Score=328.91 Aligned_cols=279 Identities=28% Similarity=0.369 Sum_probs=235.7
Q ss_pred cEEEEccceeecccCCCCCCcc----CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCC
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLA----ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGA 137 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~ 137 (381)
+|+|+|++++|++..++..|.. +...+...+||++.|+|.+|++||.++.++|.+|+|.+|+++++.|++.||+++
T Consensus 1 ~i~~iG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~ 80 (284)
T cd01945 1 RVLGVGLAVLDLIYLVASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGVDTS 80 (284)
T ss_pred CEEEECcceeEEEEEeccCCCCCCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCCCcc
Confidence 5899999999999887766553 345678899999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCC
Q 016868 138 GMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAG 217 (381)
Q Consensus 138 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 217 (381)
++...++.+|+++++ .+.+|++++..+.. ....+..++++...+++++++|+++.. ++...++++.+++.|
T Consensus 81 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~i~~~~------~~~~~~~~~~~~~~g 151 (284)
T cd01945 81 FIVVAPGARSPISSI-TDITGDRATISITA--IDTQAAPDSLPDAILGGADAVLVDGRQ------PEAALHLAQEARARG 151 (284)
T ss_pred ceeecCCCCCccEEE-EccCCCceEEEecC--CCCCCCcccCCHHHhCcCCEEEEcCCC------HHHHHHHHHHHHHcC
Confidence 999888888998876 44567776665532 333455666666668999999998752 245678899999999
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEEEEecCCceEEEe
Q 016868 218 VVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYT 297 (381)
Q Consensus 218 ~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~ 297 (381)
.++++|+..... .+ +.++++++|++++|++|++.+++... .++++.+.+.+++.||||+|++|+++++
T Consensus 152 ~~v~~~~~~~~~--------~~-~~~~~~~~dil~~n~~e~~~l~~~~~---~~~~~~l~~~~~~~vivt~G~~G~~~~~ 219 (284)
T cd01945 152 IPIPLDLDGGGL--------RV-LEELLPLADHAICSENFLRPNTGSAD---DEALELLASLGIPFVAVTLGEAGCLWLE 219 (284)
T ss_pred CCeeEeccCCcc--------cc-hHHHhccCCEEEeChhHHhhhcCCCH---HHHHHHHHhcCCcEEEEEECCCCeEEEc
Confidence 987777653221 12 56788999999999999999988643 2567778889999999999999999998
Q ss_pred -CCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 016868 298 -KDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPT 368 (381)
Q Consensus 298 -~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~ 368 (381)
+++.+++|+++++++||+||||+|+|||++++++|++ +++|+++|+++|++++++.|+..++|+
T Consensus 220 ~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~~g~~-------~~~al~~a~~~Aa~~~~~~G~~~~~~~ 284 (284)
T cd01945 220 RDGELFHVPAFPVEVVDTTGAGDVFHGAFAHALAEGMP-------LREALRFASAAAALKCRGLGGRAGLPT 284 (284)
T ss_pred CCCCEEecCCCccccccCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 6678899999999999999999999999999999999 999999999999999999999887774
No 21
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=2.8e-44 Score=334.79 Aligned_cols=290 Identities=40% Similarity=0.552 Sum_probs=245.9
Q ss_pred CcEEEEccceeecccCCCCC---CccCCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCC
Q 016868 61 PLVVCFGEMLIDFVPTVSGL---SLAESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGA 137 (381)
Q Consensus 61 ~~vlviG~~~iD~~~~~~~~---~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~ 137 (381)
.+|+|+|++++|++...+.. .. +.......+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++
T Consensus 2 ~~v~~iG~~~iD~~~~~~~~~~~~~-~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~~~ 80 (301)
T PF00294_consen 2 KKVLVIGEVNIDIIGYVDRFKGDLV-RVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEIILEELKERGVDTS 80 (301)
T ss_dssp EEEEEESEEEEEEEEESSSHTTSEE-EESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHHHHHHHHTTEEET
T ss_pred CcEEEECccceEEEeecCCcCCcce-ecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhhhhcccccccccc
Confidence 58999999999999887652 22 456778999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCC
Q 016868 138 GMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAG 217 (381)
Q Consensus 138 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 217 (381)
++.+.++.+|+.+++.++++|+|++..+ ......++.+++....+.+++++++++..+..+.+.+....+.+.+++.+
T Consensus 81 ~i~~~~~~~t~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (301)
T PF00294_consen 81 YIPRDGDEPTGRCLIIVDPDGERTFVFS--PGANSDLTPDELDEEAIDEADILHLSGVSLPEGIPEDLLEALAKAAKKNG 158 (301)
T ss_dssp TEEEESSSEEEEEEEEEETTSEEEEEEE--EGGGGGGGHHHHHHHHHHTESEEEEESGHCSTTSHHHHHHHHHHHHHHTT
T ss_pred ccccccccccceeEeeecccccceeeec--cccccccccccccccccccccceeecccccccccccceeeeccccccccc
Confidence 9998888899999999999999999876 34444456655566788899999999833444555667777777777777
Q ss_pred --CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHH---HHHhcCCCEEEEEecCCc
Q 016868 218 --VVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVY---KLFHANLKLLLVTEGPDG 292 (381)
Q Consensus 218 --~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~---~l~~~g~~~vvvt~G~~G 292 (381)
.+++.++. | ...++.+.++++++|++++|++|++.+++....+.+++.+ .++..+++.++||+|++|
T Consensus 159 ~~~~~~~~~~-----~---~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~G~~G 230 (301)
T PF00294_consen 159 PFDPVFRDPS-----W---DDLREDLKELLPYADILKPNEEEAEALTGSKIDDPEDALAALRELQARGVKIVIVTLGEDG 230 (301)
T ss_dssp EEEEEEEGGG-----S---HHHHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHHHHHHHHHHHHHTTSSEEEEEEGGGE
T ss_pred cccccccccc-----c---cccchhhhhhccccchhccccccccccccccccchhhhhccccccchhhhhhhhccccccC
Confidence 34555543 2 1257788888999999999999999999998655565554 445589999999999999
Q ss_pred eEEEeCCceEEEcc-ccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 016868 293 CRYYTKDFSGRVQG-LKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPT 368 (381)
Q Consensus 293 ~~~~~~~~~~~~~~-~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~ 368 (381)
++++++++.+++++ ++++++|||||||+|+|||++++++|++ +++|+++|+++|++++++.|+..++||
T Consensus 231 ~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~~~~-------~~~a~~~a~~~aa~~v~~~g~~~~~p~ 300 (301)
T PF00294_consen 231 ALYYTNDESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLSGMS-------LEEALKFANAAAALKVQQPGPRSPLPT 300 (301)
T ss_dssp EEEEETTEEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHTTHH-------HHHHHHHHHHHHHHHHTSSSSSGGTT-
T ss_pred cccccccccccccccccccccceeccchhhhHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhCCCCCcCCCCC
Confidence 99999888889988 5689999999999999999999999998 999999999999999999999988886
No 22
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=5.1e-43 Score=332.76 Aligned_cols=297 Identities=26% Similarity=0.301 Sum_probs=237.8
Q ss_pred CCcEEEEc-cceeecccCCCCCCc-------c--------------------------CCCCccccCCChHHHHHHHHHH
Q 016868 60 SPLVVCFG-EMLIDFVPTVSGLSL-------A--------------------------ESPAFKKAPGGAPANVAVGIAR 105 (381)
Q Consensus 60 ~~~vlviG-~~~iD~~~~~~~~~~-------~--------------------------~~~~~~~~~GG~~~NvA~~la~ 105 (381)
+++|++|| +.++|+...++..-+ . +....+..+||++.|++++|++
T Consensus 19 ~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~la~ 98 (367)
T PLN02379 19 PPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRGLSA 98 (367)
T ss_pred CCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHHHHH
Confidence 36899999 999999977652211 0 0112567799999999999996
Q ss_pred -cCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhc
Q 016868 106 -LGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLI 184 (381)
Q Consensus 106 -LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i 184 (381)
||.++.++|+||+|.+|+++++.|++.||++++++.. +.+|+.++++++++|+|++..+ .+....++.+++..+.+
T Consensus 99 ~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~-~~~Tg~~~v~v~~dgert~~~~--lg~~~~l~~~~~~~~~~ 175 (367)
T PLN02379 99 GFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAK-KGPTAQCVCLVDALGNRTMRPC--LSSAVKLQADELTKEDF 175 (367)
T ss_pred hcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccC-CCCCceEEEEECCCCCccccCC--ccccccCChhHCCHHHH
Confidence 9999999999999999999999999999999888654 4589999999999999987654 34455677777777788
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh--hCCEEecCHHHHhhcc
Q 016868 185 TKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWE--TADIIKISEEEISFLT 262 (381)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~dvl~~N~~E~~~l~ 262 (381)
++++++|++ +.. .+.+.+.++++.++++|+++++|++.... ....++.+.++++ ++|++++|++|++.++
T Consensus 176 ~~~~~v~v~-~~~---~~~~~~~~~~~~A~~~g~~v~lD~s~~~~----v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~ 247 (367)
T PLN02379 176 KGSKWLVLR-YGF---YNLEVIEAAIRLAKQEGLSVSLDLASFEM----VRNFRSPLLQLLESGKIDLCFANEDEARELL 247 (367)
T ss_pred hcCCEEEEE-ccc---CCHHHHHHHHHHHHHcCCEEEEeccchhh----hhhhhHHHHHHhhcCCccEEEcCHHHHHHHh
Confidence 999999998 432 23578889999999999999999963211 1233455556664 8999999999999999
Q ss_pred CCCC-CChHHHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEcccc-ccccCCCCccHHHHHHHHHHHHcCCccccchH
Q 016868 263 QGED-PYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLK-VEAVDATGAGDAFVAGILSQLSTDFSLLQKED 340 (381)
Q Consensus 263 ~~~~-~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~-v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~ 340 (381)
+... .+.+++. .+++.+++.++||+|++|++++.+++.+++|+++ +++||||||||+|+|||+|++++|++
T Consensus 248 ~~~~~~~~~~~~-~~l~~~~~~vvvT~G~~Ga~~~~~~~~~~v~a~~~~~vVDTtGAGDaFaagfl~gl~~G~~------ 320 (367)
T PLN02379 248 RGEQESDPEAAL-EFLAKYCNWAVVTLGSKGCIARHGKEVVRVPAIGETNAVDATGAGDLFASGFLYGLIKGLS------ 320 (367)
T ss_pred cCCCCCCHHHHH-HHHHhcCCEEEEEECCCCeEEEECCEEEEecCCCCCCcccCCChhHHHHHHHHHHHHCCCC------
Confidence 7532 2233444 4556789999999999999999988888999987 47999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHH
Q 016868 341 QLRDALRFANACGALTVMERGAIPALPTREAVLNA 375 (381)
Q Consensus 341 ~l~~al~~A~~~Aa~~~~~~G~~~~~~~~~~v~~~ 375 (381)
+++|+++|+++|+.+|++.|+.......+++.+.
T Consensus 321 -l~~a~~~g~~aAa~vi~~~G~~~~~~~~~~~~~~ 354 (367)
T PLN02379 321 -LEECCKVGACSGGSVVRALGGEVTPENWQWMYKQ 354 (367)
T ss_pred -HHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHH
Confidence 9999999999999999999987433333334333
No 23
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=3.8e-43 Score=323.81 Aligned_cols=270 Identities=29% Similarity=0.432 Sum_probs=228.3
Q ss_pred cEEEEccceeecccCCCCCCcc----CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCC
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLA----ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGA 137 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~ 137 (381)
+|+|+|++++|++..++..|.. ........+||++.|+|.+|++||.++.++|.+|+|.+|+++++.|++.||+++
T Consensus 1 ~v~~iG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 80 (279)
T cd01942 1 DVAVVGHLNYDIILKVESFPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELREEGVDTS 80 (279)
T ss_pred CEEEEecceeeeEeecccCCCCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHHcCCCcc
Confidence 5899999999999888877653 345678999999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCC
Q 016868 138 GMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAG 217 (381)
Q Consensus 138 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 217 (381)
++...++.+|+.++++++++|++++... .+....+.+++ ....+++++++|+++.. ...++++.+++.|
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g 149 (279)
T cd01942 81 HVRVVDEDSTGVAFILTDGDDNQIAYFY--PGAMDELEPND-EADPDGLADIVHLSSGP--------GLIELARELAAGG 149 (279)
T ss_pred ceEEcCCCCcceEEEEEcCCCCEEEEec--CCcccccccCC-chhhhcccCEEEeCCch--------HHHHHHHHHHHcC
Confidence 9987777889999999988888887754 34444455544 44667899999998752 3557777888889
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHH---hhccCCCCCChHHHHHHHHhcCCCEEEEEecCCceE
Q 016868 218 VVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEI---SFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCR 294 (381)
Q Consensus 218 ~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~---~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~ 294 (381)
+++++|++.+...|. .+.+..+++++|++++|++|+ ..+++.... . ...+++.||||+|++|++
T Consensus 150 ~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~---~-----~~~~~~~vvvt~G~~G~~ 216 (279)
T cd01942 150 ITVSFDPGQELPRLS-----GEELEEILERADILFVNDYEAELLKERTGLSEA---E-----LASGVRVVVVTLGPKGAI 216 (279)
T ss_pred CeEEEcchhhhhhcc-----HHHHHHHHhhCCEEecCHHHHHHHHhhcCCChH---H-----HhcCCCEEEEEECCCceE
Confidence 999999986554332 245677889999999999999 555554321 1 127899999999999999
Q ss_pred EEeCCceEEEccc-cccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCC
Q 016868 295 YYTKDFSGRVQGL-KVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGA 362 (381)
Q Consensus 295 ~~~~~~~~~~~~~-~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~ 362 (381)
++.+++.+++|++ +++++||+||||+|+|||++++++|++ +++|+++|+++|++++++.|+
T Consensus 217 ~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~-------l~~al~~a~~~Aa~~~~~~G~ 278 (279)
T cd01942 217 VFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGFLYGLLRGYD-------LEESLRLGNLAASLKVERRGA 278 (279)
T ss_pred EEECCceEEccCcCcCCCcCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHcccCC
Confidence 9998888899987 889999999999999999999999999 999999999999999999986
No 24
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=3.5e-42 Score=319.61 Aligned_cols=284 Identities=33% Similarity=0.429 Sum_probs=241.6
Q ss_pred ccceeecccCCCCCCcc----CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeeec
Q 016868 67 GEMLIDFVPTVSGLSLA----ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFD 142 (381)
Q Consensus 67 G~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~ 142 (381)
|++++|++..+++.|.. ....+..++||++.|+|++|++||.++.+++.+|+|.+|+++++.|++.||+++++...
T Consensus 1 G~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~ 80 (293)
T TIGR02152 1 GSINMDLVLRTDRLPKPGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSNGIDTEYVGTV 80 (293)
T ss_pred CCceEeEEEEeCCCCCCCCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHcCCCeeEEEEc
Confidence 78999999888876654 34456899999999999999999999999999999999999999999999999999888
Q ss_pred CCCCceEEEEEecCCCCceEEEecCCCccccCChhccc--hhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeE
Q 016868 143 PGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELD--LSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVL 220 (381)
Q Consensus 143 ~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v 220 (381)
++.+|++++++++++|++++..+ .+.+..+.++++. .+.+..++++++.+ +.+.+.+.++++.++++++++
T Consensus 81 ~~~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v 153 (293)
T TIGR02152 81 KDTPTGTAFITVDDTGENRIVVV--AGANAELTPEDIDAAEALIAESDIVLLQL-----EIPLETVLEAAKIAKKHGVKV 153 (293)
T ss_pred CCCCCceEEEEEcCCCCEEEEEE--CCcCCcCCHHHHHHHHhhhccCCEEEEec-----CCCHHHHHHHHHHHHHcCCEE
Confidence 88899999999998899988776 3444556666665 34678899987653 334567788999999999999
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCC---ChHHHHHHHHhcCCCEEEEEecCCceEEEe
Q 016868 221 SYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDP---YDDAVVYKLFHANLKLLLVTEGPDGCRYYT 297 (381)
Q Consensus 221 ~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~---~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~ 297 (381)
++|++.... ....++++++|++++|++|++.+++.... +..++++.+.++|++.|+||+|++|+++++
T Consensus 154 ~~D~~~~~~---------~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~ 224 (293)
T TIGR02152 154 ILNPAPAIK---------DLDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLEKGVKNVIITLGSKGALLVS 224 (293)
T ss_pred EEECCcCcc---------cchHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHHcCCCeEEEEeCCCceEEEe
Confidence 999964311 11246788999999999999999987533 234566788888999999999999999999
Q ss_pred CCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHH
Q 016868 298 KDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAVL 373 (381)
Q Consensus 298 ~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~~~v~ 373 (381)
+++.+++|+++++++||+||||+|+|||++++++|++ +++|+++|+++|++++++.|+...+|+.++++
T Consensus 225 ~~~~~~~~~~~~~~vdt~GAGDaf~Ag~l~~l~~g~~-------~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~~ 293 (293)
T TIGR02152 225 KDESKLIPAFKVKAVDTTAAGDTFNGAFAVALAEGKS-------LEDAIRFANAAAAISVTRKGAQSSIPYLEEVE 293 (293)
T ss_pred CCceeEccCCCCceeCCCCcHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHcccCcccCCCChHHcC
Confidence 8888899999999999999999999999999999999 99999999999999999999987788888763
No 25
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=8e-42 Score=312.65 Aligned_cols=261 Identities=23% Similarity=0.334 Sum_probs=219.4
Q ss_pred cEEEEccceeecccCCCCCCccC----CCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCC
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLAE----SPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGA 137 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~~----~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~ 137 (381)
+|+|+|++++|++..+++.|... ...+...+||++.|+|.+|++||.++.++|.+|+|.+|+++++.|++ ++++.
T Consensus 1 ~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~~l~~-~~~~~ 79 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLEELES-GGDKH 79 (265)
T ss_pred CEEEEeeeeEEEEEEecCCCCCCceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHh-cCCcc
Confidence 58999999999998887765542 45678999999999999999999999999999999999999999999 99988
Q ss_pred CeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCC
Q 016868 138 GMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAG 217 (381)
Q Consensus 138 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 217 (381)
.++.. +..|+.++++++++|+|++....... .+++..+.+++++++|+++.. ...++++.+++.+
T Consensus 80 ~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~a~~~~ 144 (265)
T cd01947 80 TVAWR-DKPTRKTLSFIDPNGERTITVPGERL------EDDLKWPILDEGDGVFITAAA--------VDKEAIRKCRETK 144 (265)
T ss_pred eEEec-CCCCceEEEEECCCCcceEEecCCCC------cccCCHhHhccCCEEEEeccc--------ccHHHHHHHHHhC
Confidence 87754 45899999999989999887642211 234444567889999998753 1235566777765
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEEEEecCCceEEEe
Q 016868 218 VVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYT 297 (381)
Q Consensus 218 ~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~ 297 (381)
.+++|++.+.. .+.+.++++++|++++|++|+..+++ .+.+.+.+++.||||+|++|+++++
T Consensus 145 -~~~~d~~~~~~--------~~~~~~~~~~~d~~~~n~~e~~~l~~---------~~~~~~~~~~~viit~G~~Ga~~~~ 206 (265)
T cd01947 145 -LVILQVTPRVR--------VDELNQALIPLDILIGSRLDPGELVV---------AEKIAGPFPRYLIVTEGELGAILYP 206 (265)
T ss_pred -CeEeccCcccc--------chhHHHHhhhCCEEEeCHHHHHHhhh---------HHHHHhccCCEEEEEeCCCCeEEEE
Confidence 57788875433 12456788999999999999998864 4466678999999999999999999
Q ss_pred CCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCC
Q 016868 298 KDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAI 363 (381)
Q Consensus 298 ~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~ 363 (381)
+++.+++++++++++|||||||+|.|||++++++|++ +++|+++|+++|+.++++.|++
T Consensus 207 ~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------~~~al~~a~~~Aa~~v~~~G~~ 265 (265)
T cd01947 207 GGRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLKGWS-------IEEALELGAQCGAICVSHFGPY 265 (265)
T ss_pred CCeeEECCCCCCCCCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCCC
Confidence 8888899999999999999999999999999999999 9999999999999999999963
No 26
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=100.00 E-value=1.3e-41 Score=319.05 Aligned_cols=292 Identities=24% Similarity=0.257 Sum_probs=229.9
Q ss_pred CCCcEEEEccceeecccC--CCCCCcc------CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHH
Q 016868 59 ESPLVVCFGEMLIDFVPT--VSGLSLA------ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILK 130 (381)
Q Consensus 59 ~~~~vlviG~~~iD~~~~--~~~~~~~------~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~ 130 (381)
+.++|+++|++++|++.. ++..+.. ........+|| +.|+|.+|++||.++.++|.||+|.+|+++++.|+
T Consensus 6 ~~~~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~ 84 (315)
T TIGR02198 6 KGAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEREEDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKRLEALLA 84 (315)
T ss_pred CCCcEEEECceeEeeeeeecccccCCCCCCceEEEEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHHHHHHHH
Confidence 357899999999999865 3332111 12345677999 79999999999999999999999999999999999
Q ss_pred HCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCCh----hccc--hhhcCCccEEEEccccccCchhHH
Q 016868 131 ENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQE----AELD--LSLITKAKIFHYGSISLITEPCKS 204 (381)
Q Consensus 131 ~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~l~--~~~i~~~~~~~~~~~~~~~~~~~~ 204 (381)
++||+++++...++.+|+.+++++++++.... .. ......++. +.+. .+.++++|+++++++. ....+.+
T Consensus 85 ~~gI~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~-~~~~~~~ 160 (315)
T TIGR02198 85 EEGIDTSGLIRDKDRPTTTKTRVLARNQQLLR-VD--FEERDPINAELEARLLAAIREQLASADAVVLSDYA-KGVLTPR 160 (315)
T ss_pred HCCCCcceEEECCCCCcceEEEEEcCCeEEEE-ec--CCCCCCCCHHHHHHHHHHHHhhhhhCCEEEEecCC-CCccCHH
Confidence 99999999988888899999988876433222 21 111111221 1111 2457899999998753 2334567
Q ss_pred HHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCC--ChHHHHHHHH-hcCC
Q 016868 205 AHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDP--YDDAVVYKLF-HANL 281 (381)
Q Consensus 205 ~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~--~~~~~~~~l~-~~g~ 281 (381)
....+++.+++.|+++++||+.+. | ..++++|++++|++|++.+++.... +..++++.++ +.|+
T Consensus 161 ~~~~~~~~a~~~g~~v~~D~~~~~--~-----------~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~l~~~~g~ 227 (315)
T TIGR02198 161 VVQEVIAAARKHGKPVLVDPKGKD--F-----------SRYRGATLITPNRKEAEAAVGACDTEAELVQAAEKLLEELDL 227 (315)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCcc--h-----------hhcCCCcEECCCHHHHHHHhCCCCCHHHHHHHHHHHHHHcCC
Confidence 788899999999999999997431 1 2467899999999999999984221 1234445555 4789
Q ss_pred CEEEEEecCCceEEEeC-CceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhc
Q 016868 282 KLLLVTEGPDGCRYYTK-DFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMER 360 (381)
Q Consensus 282 ~~vvvt~G~~G~~~~~~-~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~ 360 (381)
+.||||+|++|++++++ ++.+++|+++++++||+||||+|.|||++++++|++ +++|+++|+++|++++++.
T Consensus 228 ~~vivT~G~~G~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~l~~g~~-------~~~al~~A~~~aa~~~~~~ 300 (315)
T TIGR02198 228 EALLVTRSEKGMTLFTREGEPIHIPAQAREVYDVTGAGDTVIATLALALAAGAS-------LEEACRLANAAAGVVVGKL 300 (315)
T ss_pred CEEEEEcCCCCeEEEecCCCeEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCC-------HHHHHHHHHHHhhhhhccC
Confidence 99999999999999884 567889999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHh
Q 016868 361 GAIPALPTREAVLNAIH 377 (381)
Q Consensus 361 G~~~~~~~~~~v~~~l~ 377 (381)
|+.. ++++++++.|+
T Consensus 301 G~~~--~~~~~~~~~~~ 315 (315)
T TIGR02198 301 GTAT--VSPAELANALQ 315 (315)
T ss_pred CCCC--CCHHHHHHHhC
Confidence 9874 79999988764
No 27
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=2.9e-41 Score=308.82 Aligned_cols=263 Identities=30% Similarity=0.364 Sum_probs=217.0
Q ss_pred cEEEEccceeecccCCCCCCccCCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeee
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLAESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRF 141 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~ 141 (381)
+|+|+|++++|++... ...++||++.|+|.+|++||.++.++|.+|+|.+|+++++.|++.||+++++..
T Consensus 1 ~v~~iG~~~~D~~~~~----------~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~~v~~ 70 (264)
T cd01940 1 RLAAIGDNVVDKYLHL----------GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRSTLKRLGVDISHCRV 70 (264)
T ss_pred CeEEEcceEEEEeccC----------ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHHHHHHcCCChhheEE
Confidence 5899999999999752 356899999999999999999999999999999999999999999999999987
Q ss_pred cCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEE
Q 016868 142 DPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLS 221 (381)
Q Consensus 142 ~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~ 221 (381)
.++ +|+.+++. .++|+|++..++. +......+.+.....+++++++|++++.. .+...++++.+++.+++|+
T Consensus 71 ~~~-~t~~~~~~-~~~g~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~a~~~g~~v~ 142 (264)
T cd01940 71 KEG-ENAVADVE-LVDGDRIFGLSNK-GGVAREHPFEADLEYLSQFDLVHTGIYSH-----EGHLEKALQALVGAGALIS 142 (264)
T ss_pred cCC-CCceEEEE-ecCCceEEEeecC-CcHHhcccCcccHhHHhcCCEEEEccccc-----HHHHHHHHHHHHHcCCEEE
Confidence 654 78887754 4678888876532 22222222223335678999999987532 4567788999999999999
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEEEEecCCceEEEeCCce
Q 016868 222 YDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFS 301 (381)
Q Consensus 222 ~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~ 301 (381)
+|++.+ |. .+.+..+++++|++++|++|... .+..++++.+++.+++.||||+|++|++++.+++.
T Consensus 143 ~D~~~~---~~-----~~~~~~~~~~~d~~~~~~~~~~~------~~~~~~~~~l~~~~~~~vvvT~G~~G~~~~~~~~~ 208 (264)
T cd01940 143 FDFSDR---WD-----DDYLQLVCPYVDFAFFSASDLSD------EEVKAKLKEAVSRGAKLVIVTRGEDGAIAYDGAVF 208 (264)
T ss_pred EcCccc---CC-----HHHHHhhcccCCEEEechhhcCc------chHHHHHHHHHHcCCCEEEEEECCCCeEEEeCCeE
Confidence 999864 21 12356778999999999887531 22345677788899999999999999999998888
Q ss_pred EEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCC
Q 016868 302 GRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGA 362 (381)
Q Consensus 302 ~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~ 362 (381)
+++|+++++++|||||||+|+|||++++++|++ ++++|+++|+++|++++++.|+
T Consensus 209 ~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~------~~~~al~~a~~~aa~~~~~~G~ 263 (264)
T cd01940 209 YSVAPRPVEVVDTLGAGDSFIAGFLLSLLAGGT------AIAEAMRQGAQFAAKTCGHEGA 263 (264)
T ss_pred EecCCcCCCCCCCCCchHHHHHHHHHHHHhCCc------hHHHHHHHHHHHHHHHhcccCC
Confidence 899999999999999999999999999999974 2899999999999999999986
No 28
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=100.00 E-value=6.7e-41 Score=312.64 Aligned_cols=287 Identities=22% Similarity=0.255 Sum_probs=234.2
Q ss_pred EEccceeecccCCCCCCcc---CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeee
Q 016868 65 CFGEMLIDFVPTVSGLSLA---ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRF 141 (381)
Q Consensus 65 viG~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~ 141 (381)
|.=++++|++..+++.|.. ...+...++||++.|+|.+|++||.++.++|.||+| +|+++++.|++.||+++++..
T Consensus 4 ~~~~~~~D~~~~~~~~~~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~~~gId~~~~~~ 82 (304)
T TIGR03828 4 VTLNPAIDLTIELDGLTLGEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLREEGIKTDFVRV 82 (304)
T ss_pred EEcchHHeEEEEccccccCceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHHHCCCcceEEEC
Confidence 3347889999888887732 345678999999999999999999999999999999 699999999999999998877
Q ss_pred cCCCCceEEEEEecCCCCceEEEecCCCccccCChhccch------hhcCCccEEEEccccccCchhHHHHHHHHHHHHH
Q 016868 142 DPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDL------SLITKAKIFHYGSISLITEPCKSAHIAAAKAAKD 215 (381)
Q Consensus 142 ~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 215 (381)
.+ .|++++++++.+|+++++.+. +. .+++++++. +.+++++++|++++.. ...+.+.+..+++.+++
T Consensus 83 ~~--~t~~~~~~~~~~g~~~~~~~~--~~--~~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~-~~~~~~~~~~~~~~~~~ 155 (304)
T TIGR03828 83 PG--ETRINVKIKEPSGTETKLNGP--GP--EISEEELEALLEKLRAQLAEGDWLVLSGSLP-PGVPPDFYAELIALARE 155 (304)
T ss_pred CC--CCeeeEEEEeCCCCEEEEECC--CC--CCCHHHHHHHHHHHHHhccCCCEEEEECCCC-CCCCHHHHHHHHHHHHH
Confidence 63 466777777778888776542 22 244443331 3578999999987632 23345677889999999
Q ss_pred CCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChH---HHHHHHHhcCCCEEEEEecCCc
Q 016868 216 AGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDD---AVVYKLFHANLKLLLVTEGPDG 292 (381)
Q Consensus 216 ~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~---~~~~~l~~~g~~~vvvt~G~~G 292 (381)
.+.++++|++. ...+ ..+...+|++++|+.|++.+++....+.+ ++++.+.+.|++.||||+|++|
T Consensus 156 ~~~~v~~D~~~--------~~~~---~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvT~G~~G 224 (304)
T TIGR03828 156 KGAKVILDTSG--------EALR---DGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARELLDLGAENVLISLGADG 224 (304)
T ss_pred cCCEEEEECCh--------HHHH---HHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCC
Confidence 99999999962 1111 12234579999999999999987544333 4556777899999999999999
Q ss_pred eEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHH
Q 016868 293 CRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAV 372 (381)
Q Consensus 293 ~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~~~v 372 (381)
++++++++.+++++++++++|||||||+|.|||+++|++|++ +++|+++|+++|++++++.|+. +|+++|+
T Consensus 225 ~~~~~~~~~~~~~~~~~~vvDttGAGDaF~a~~l~~l~~g~~-------~~~a~~~a~~~Aa~~~~~~G~~--~p~~~~~ 295 (304)
T TIGR03828 225 ALLVTKEGALFAQPPKGEVVSTVGAGDSMVAGFLAGLESGLS-------LEEALRLAVAAGSAAAFSEGTG--LPDPEDI 295 (304)
T ss_pred cEEEcCCceEEEeCCCccccCCcChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcCCC--CCCHHHH
Confidence 999998888889998899999999999999999999999999 9999999999999999999974 7999999
Q ss_pred HHHHhCC
Q 016868 373 LNAIHAP 379 (381)
Q Consensus 373 ~~~l~~~ 379 (381)
++++.+|
T Consensus 296 ~~~~~~~ 302 (304)
T TIGR03828 296 EELLPQV 302 (304)
T ss_pred HHHHhcc
Confidence 9998876
No 29
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=3.4e-41 Score=312.50 Aligned_cols=273 Identities=18% Similarity=0.211 Sum_probs=219.6
Q ss_pred cEEEEccceeecccCCCCCCccC----CCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCC
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLAE----SPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGA 137 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~~----~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~ 137 (381)
.|+|+|++++|++..+++.|... .......+||++.|+|.+|++||.++.++|.+|+|++|+++++.|++.||+++
T Consensus 1 ~v~~iG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~~l~~~gId~~ 80 (290)
T cd01939 1 AVLCVGLTVLDFITTVDKYPFEDSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLDDFQSRGIDIS 80 (290)
T ss_pred CEEEEeeeeeEEEeeecCCCCCCcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHHHHHHcCCcee
Confidence 38999999999999988877653 23457789999999999999999999999999999999999999999999999
Q ss_pred CeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCC
Q 016868 138 GMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAG 217 (381)
Q Consensus 138 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 217 (381)
++...++..+..++++.+++|+|++.++.. ....++.++++...+++++++|++++.+ +...++++.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~ 152 (290)
T cd01939 81 HCYRKDIDEPASSYIIRSRAGGRTTIVNDN--NLPEVTYDDFSKIDLTQYGWIHFEGRNP------DETLRMMQHIEEHN 152 (290)
T ss_pred eeeEcCCCCCeeEEEEEcCCCCeEEEEeCC--CCCCCCHHHHhhhhhccCCEEEEeccCH------HHHHHHHHHHHHhc
Confidence 987666656666677777788888877633 3445677776655568999999987632 23456666777665
Q ss_pred -------CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHH--HhcCCCEEEEEe
Q 016868 218 -------VVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKL--FHANLKLLLVTE 288 (381)
Q Consensus 218 -------~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l--~~~g~~~vvvt~ 288 (381)
+++++|+.... +.+.++++++|++++|++|++.+ +... .++.++.+ ...+++.||||+
T Consensus 153 ~~~~~~~~~v~~d~~~~~----------~~~~~~l~~~di~~~n~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~vvvt~ 219 (290)
T cd01939 153 NRRPEIRITISVEVEKPR----------EELLELAAYCDVVFVSKDWAQSR-GYKS--PEECLRGEGPRAKKAALLVCTW 219 (290)
T ss_pred CcCCCcceEEEEEeccCc----------hhhhhHHhhCCEEEEEhHHHHhc-CcCC--HHHHHHhhhhhccCCcEEEEEc
Confidence 68889986321 22347888999999999998865 5432 34444333 245789999999
Q ss_pred cCCceEEEeC-CceEEEccccc-cccCCCCccHHHHHHHHHHHHcCC-ccccchHHHHHHHHHHHHHHHHHhhhcCC
Q 016868 289 GPDGCRYYTK-DFSGRVQGLKV-EAVDATGAGDAFVAGILSQLSTDF-SLLQKEDQLRDALRFANACGALTVMERGA 362 (381)
Q Consensus 289 G~~G~~~~~~-~~~~~~~~~~v-~vvdttGAGDaF~ag~l~~l~~g~-~~~~~~~~l~~al~~A~~~Aa~~~~~~G~ 362 (381)
|++|++++.+ ++.+++|+++. ++|||+||||+|+|||++++++|+ + +++|+++|+++|++++++.|.
T Consensus 220 G~~G~~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agfl~~l~~g~~~-------~~~a~~~a~a~aa~~i~~~G~ 289 (290)
T cd01939 220 GDQGAGALGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAVIYALNKGPDD-------LSEALDFGNRVASQKCTGVGF 289 (290)
T ss_pred ccCCeEEEcCCCCEEEecCCCCCCcccCCCchHHHHHHHHHHHHcCCcc-------HHHHHHHHHHHHHHHHhhhcC
Confidence 9999999886 45678898774 699999999999999999999999 7 999999999999999999884
No 30
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=4.7e-41 Score=313.70 Aligned_cols=278 Identities=26% Similarity=0.311 Sum_probs=220.2
Q ss_pred cEEEEccceeecccCC--CCCCcc------CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCC
Q 016868 62 LVVCFGEMLIDFVPTV--SGLSLA------ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENN 133 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~--~~~~~~------~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~g 133 (381)
+|+|+|++++|++... +..+.. ........+|| +.|+|.+|++||.++.++|.+|+|.+|+++++.|+++|
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~g 79 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERISPEAPVPVVKVEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEG 79 (304)
T ss_pred CEEEEcceeEEeeEeeccccccCCCCcceEEeeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHHHHHhCC
Confidence 5899999999998753 333222 12345668999 58999999999999999999999999999999999999
Q ss_pred CCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhc------cchhhcCCccEEEEccccccCchhHHHHH
Q 016868 134 VNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAE------LDLSLITKAKIFHYGSISLITEPCKSAHI 207 (381)
Q Consensus 134 i~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------l~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 207 (381)
|+++++ ..++.+|+.+++++++ +++.+..+... ...++.+. ...+.++++++++++++. ....+.+...
T Consensus 80 I~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~-~~~~~~~~~~ 154 (304)
T cd01172 80 IDTDGI-VDEGRPTTTKTRVIAR-NQQLLRVDRED--DSPLSAEEEQRLIERIAERLPEADVVILSDYG-KGVLTPRVIE 154 (304)
T ss_pred CCcceE-ecCCCCceEEEEEecC-CcEEEEEecCC--CCCCCHHHHHHHHHHHHHhhccCCEEEEEcCC-CCccCHHHHH
Confidence 999984 5566679888888765 45555443221 22233221 112457899999987642 2233456778
Q ss_pred HHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCCh---HHHHHHHH-hcCCCE
Q 016868 208 AAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYD---DAVVYKLF-HANLKL 283 (381)
Q Consensus 208 ~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~---~~~~~~l~-~~g~~~ 283 (381)
.+++.+++.++++++|++.+.. ..++++|++++|++|++.+++....+. +++++.+. ..|++.
T Consensus 155 ~~~~~a~~~~~~v~~D~~~~~~-------------~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~ 221 (304)
T cd01172 155 ALIAAARELGIPVLVDPKGRDY-------------SKYRGATLLTPNEKEAREALGDEINDDDELEAAGEKLLELLNLEA 221 (304)
T ss_pred HHHHHHHhcCCCEEEeCCCcch-------------hhccCCcEeCCCHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCCe
Confidence 8899999999999999974311 356789999999999999998753322 34555565 478999
Q ss_pred EEEEecCCceEEEe-CCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCC
Q 016868 284 LLVTEGPDGCRYYT-KDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGA 362 (381)
Q Consensus 284 vvvt~G~~G~~~~~-~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~ 362 (381)
||||+|++|+++++ +++.+++|+++++++|||||||+|+|||+++|++|++ +++|+++|+++|++++++.|+
T Consensus 222 vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~ag~i~~l~~g~~-------~~~al~~a~a~Aa~~~~~~g~ 294 (304)
T cd01172 222 LLVTLGEEGMTLFERDGEVQHIPALAKEVYDVTGAGDTVIATLALALAAGAD-------LEEAAFLANAAAGVVVGKVGT 294 (304)
T ss_pred EEEEcCCCccEEEcCCCcEEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCC-------HHHHHHHHHHHhheeeecCCC
Confidence 99999999999998 6778899999999999999999999999999999999 999999999999999999998
Q ss_pred CCC
Q 016868 363 IPA 365 (381)
Q Consensus 363 ~~~ 365 (381)
.+.
T Consensus 295 ~~~ 297 (304)
T cd01172 295 APV 297 (304)
T ss_pred CCc
Confidence 754
No 31
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=100.00 E-value=7.3e-40 Score=306.60 Aligned_cols=289 Identities=16% Similarity=0.159 Sum_probs=235.0
Q ss_pred EE-EEccceeecccCCCCCCcc---CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCC
Q 016868 63 VV-CFGEMLIDFVPTVSGLSLA---ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAG 138 (381)
Q Consensus 63 vl-viG~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~ 138 (381)
|+ |.=+.++|++..+++.+.. +......++||++.|+|.+|++||.++.++|.+|+|.+|++ ++.|+++||++.+
T Consensus 5 ~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~-~~~l~~~gv~~~~ 83 (312)
T PRK09513 5 VATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF-QQLFSELGIANRF 83 (312)
T ss_pred EEEEecChHHeEEEEcCceecCCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-HHHHHHcCCCccE
Confidence 55 4459999999888887643 34567899999999999999999999999999999999986 6889999999876
Q ss_pred eeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccc------hhhcCCccEEEEccccccCchhHHHHHHHHHH
Q 016868 139 MRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELD------LSLITKAKIFHYGSISLITEPCKSAHIAAAKA 212 (381)
Q Consensus 139 v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (381)
+ ..++ +|+.++.+++.+|++++.... .. .+++.++. .+.++++|++|++++.. .+...+...++++.
T Consensus 84 ~-~~~~-~t~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~-~~~~~~~~~~~~~~ 156 (312)
T PRK09513 84 Q-VVQG-RTRINVKLTEKDGEVTDFNFS--GF--EVTPADWERFVTDSLSWLGQFDMVAVSGSLP-RGVSPEAFTDWMTR 156 (312)
T ss_pred E-ECCC-CCEEEEEEEeCCCcEEEEeCC--CC--CCCHHHHHHHHHHHHhhcCCCCEEEEECCCC-CCCCHHHHHHHHHH
Confidence 6 4444 788888888888888765542 21 23333322 24578999999988643 33455777888999
Q ss_pred HHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChH---HHHHHHHhcCCCEEEEEec
Q 016868 213 AKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDD---AVVYKLFHANLKLLLVTEG 289 (381)
Q Consensus 213 a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~---~~~~~l~~~g~~~vvvt~G 289 (381)
+++.|.++++|++. ...+ ..+....|++++|++|+..+++....+.+ ++++.+.+.|++.||||+|
T Consensus 157 a~~~g~~v~~D~~~--------~~~~---~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vvvt~G 225 (312)
T PRK09513 157 LRSQCPCIIFDSSR--------EALV---AGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHALREQGIAHVVISLG 225 (312)
T ss_pred HHhcCCEEEEECCh--------HHHH---HHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999962 1122 22345788999999999999987654433 3556777899999999999
Q ss_pred CCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCH
Q 016868 290 PDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTR 369 (381)
Q Consensus 290 ~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~ 369 (381)
++|++++.+++.+++++++++++||+||||+|+|||++++++|++ +++|+++|+++|++++++.|. +++++
T Consensus 226 ~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~-------~~~a~~~A~a~Aa~~~~~~~~--~~~~~ 296 (312)
T PRK09513 226 AEGALWVNASGEWIAKPPACDVVSTVGAGDSMVGGLIYGLLMRES-------SEHTLRLATAVSALAVSQSNV--GITDR 296 (312)
T ss_pred CCCcEEEeCCceEEecCCCccccCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhhCCCC--CCCCH
Confidence 999999888877788888899999999999999999999999999 999999999999999999974 77999
Q ss_pred HHHHHHHhCC
Q 016868 370 EAVLNAIHAP 379 (381)
Q Consensus 370 ~~v~~~l~~~ 379 (381)
+|+++++.+|
T Consensus 297 ~e~~~~l~~~ 306 (312)
T PRK09513 297 PQLAAMMARV 306 (312)
T ss_pred HHHHHHHhce
Confidence 9999998775
No 32
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=100.00 E-value=2e-40 Score=302.50 Aligned_cols=258 Identities=26% Similarity=0.310 Sum_probs=211.4
Q ss_pred CcEEEEccceeecccCCCCCCccCCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCee
Q 016868 61 PLVVCFGEMLIDFVPTVSGLSLAESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMR 140 (381)
Q Consensus 61 ~~vlviG~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~ 140 (381)
++|+++|++++|++.... +.++||.+.|+|.+|++||.++.++|.+|+|.+|+++++.|++.||+++++.
T Consensus 1 ~~v~~iG~~~~D~~~~~~----------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~~~l~~~gI~~~~~~ 70 (260)
T PRK09813 1 KKLATIGDNCVDIYPQLG----------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLARMGVDISHVH 70 (260)
T ss_pred CeEEEeccceeeecccCC----------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHHHHHHHcCCcchhee
Confidence 479999999999997642 2589999999999999999999999999999999999999999999999998
Q ss_pred ecCCCCceEEEEEecCCCCceEEEecCC-CccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCe
Q 016868 141 FDPGARTALAFVTLRSDGEREFMFYRNP-SADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVV 219 (381)
Q Consensus 141 ~~~~~~t~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~ 219 (381)
+.++ +|+.+++.++ +|+|++..+... .....+++. +.+.+.+++++|++.+. ...++++.+++++++
T Consensus 71 ~~~~-~t~~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~--~~~~l~~~~~v~~~~~~--------~~~~~~~~~~~~~~~ 138 (260)
T PRK09813 71 TKHG-VTAQTQVELH-DNDRVFGDYTEGVMADFALSEE--DYAWLAQYDIVHAAIWG--------HAEDAFPQLHAAGKL 138 (260)
T ss_pred eecC-CCceEEEEEe-CCcEEeeccCCCcccccccCHH--HHHHHHhCCEEEEeccc--------hHHHHHHHHHHcCCe
Confidence 8665 7888877775 688887654321 222223332 23567889999986431 123567778899999
Q ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEEEEecCCceEEEeCC
Q 016868 220 LSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKD 299 (381)
Q Consensus 220 v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 299 (381)
+++|++.+.. .+.+.++++++|+++.|+++. ..+.+++++.+.+.|++.||||+|++|+++++++
T Consensus 139 v~~D~~~~~~--------~~~~~~~~~~~d~~~~~~~~~-------~~~~~~~~~~~~~~g~~~viit~G~~Ga~~~~~~ 203 (260)
T PRK09813 139 TAFDFSDKWD--------SPLWQTLVPHLDYAFASAPQE-------DEFLRLKMKAIVARGAGVVIVTLGENGSIAWDGA 203 (260)
T ss_pred EEEEcCCCcc--------HHHHHHhCCceeEEEecCCcc-------hHHHHHHHHHHHHcCCCEEEEEECCCceEEEECC
Confidence 9999975321 123567889999999886531 1122566777888999999999999999999988
Q ss_pred ceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCC
Q 016868 300 FSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGA 362 (381)
Q Consensus 300 ~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~ 362 (381)
+.+++|+++++++|||||||+|+|||++++++|++ +++|+++|+++|++++++.|+
T Consensus 204 ~~~~~~~~~~~~vDttGAGDaF~ag~i~~~~~g~~-------~~~al~~a~~~aa~~~~~~G~ 259 (260)
T PRK09813 204 QFWRQAPEPVTVVDTMGAGDSFIAGFLCGWLAGMT-------LPQAMAQGTACAAKTIQYHGA 259 (260)
T ss_pred EEEecCCcccCCCCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCC
Confidence 88899999999999999999999999999999999 999999999999999999986
No 33
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=7e-41 Score=314.51 Aligned_cols=277 Identities=17% Similarity=0.200 Sum_probs=226.9
Q ss_pred cEEEEccceeecccCCCCCCccCCCCccccCCChHHHHHHHHHHc-CC--ce--EEEeecCCChHHHHHHHHHHHCCCCC
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLAESPAFKKAPGGAPANVAVGIARL-GG--SS--AFIGKVGADEFGYMLADILKENNVNG 136 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~L-G~--~v--~li~~vG~D~~g~~i~~~l~~~gi~~ 136 (381)
+++++|++++|++...++ ..+...+||++.|+|+++++| |. ++ .+++.+|+| +|+++++.|++.||++
T Consensus 1 ~~~~~G~~~~d~i~~~~~------~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~~~GVd~ 73 (328)
T cd01943 1 DFTTLGMFIIDEIEYPDS------EPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELESWGTGM 73 (328)
T ss_pred CccccCcEEeeccccCCC------CccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHHhcCCce
Confidence 478999999999987653 345678999999999999999 54 67 889999999 9999999999999999
Q ss_pred CCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHH-
Q 016868 137 AGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKD- 215 (381)
Q Consensus 137 ~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~- 215 (381)
++ ...++.+|+.++++++++|+|.+.++ .+.+..+++++++...+..++++|+.+... ...+...++++.+++
T Consensus 74 ~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~--~~~~~~~~~~~l~~~~~~~a~~~hl~~~~~---~~~~~~~~~~~~a~~~ 147 (328)
T cd01943 74 VF-RRDPGRLTTRGLNIYDGNDRRFFKYL--TPKKRIDVSDDLNSTPLIRSSCIHLICSPE---RCASIVDDIINLFKLL 147 (328)
T ss_pred EE-EeCCCCcchhhhhhcCCCCcceeeec--CcccccccccccccccccCCCeEEEECCHH---HHHHHHHHHHHHHHhh
Confidence 98 77778899999988888889887765 334466777777766788899999976431 134677788888888
Q ss_pred -----CCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCCh---HHHH-----H---HHHhc
Q 016868 216 -----AGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYD---DAVV-----Y---KLFHA 279 (381)
Q Consensus 216 -----~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~---~~~~-----~---~l~~~ 279 (381)
.+.++++|++.... . ...++.+.++++++|++++|++|++.+++....+. ++.. . .+...
T Consensus 148 ~~d~~~g~~~~~d~~~~~~--~--~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (328)
T cd01943 148 KGNSPTRPKIVWEPLPDSC--D--PENLEDLLQALPRVDVFSPNLEEAARLLGLPTSEPSSDEEKEAVLQALLFSGILQD 223 (328)
T ss_pred ccccCCccEEEEecCCccc--C--hhhHHHHHHHhccCCEECCCHHHHHHHhCCCCCCccchhhhhhhHHHHHHHhhhcc
Confidence 88899999863211 0 11345678899999999999999999998764321 1111 1 22457
Q ss_pred CCCEEEEEecCCceEEEe--CCceEEEccccc---cccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHH
Q 016868 280 NLKLLLVTEGPDGCRYYT--KDFSGRVQGLKV---EAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGA 354 (381)
Q Consensus 280 g~~~vvvt~G~~G~~~~~--~~~~~~~~~~~v---~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa 354 (381)
+++.||||+|++|+++++ +++.+++|++++ +++|||||||+|+|||+++|++|++ +++|+++|+++|+
T Consensus 224 g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~agfl~~l~~g~~-------~~~al~~a~a~Aa 296 (328)
T cd01943 224 PGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFLGGFAAGLALTKS-------IDEACIYGSVAAS 296 (328)
T ss_pred CCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHH
Confidence 889999999999999998 456788999988 9999999999999999999999999 9999999999999
Q ss_pred HHhhhcCC
Q 016868 355 LTVMERGA 362 (381)
Q Consensus 355 ~~~~~~G~ 362 (381)
+++++.|.
T Consensus 297 ~~v~~~G~ 304 (328)
T cd01943 297 FAIEQVGL 304 (328)
T ss_pred HHHccCCC
Confidence 99999996
No 34
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=100.00 E-value=7.5e-40 Score=306.12 Aligned_cols=289 Identities=22% Similarity=0.226 Sum_probs=230.0
Q ss_pred EEEEccceeecccCCCCCCccC---CCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCe
Q 016868 63 VVCFGEMLIDFVPTVSGLSLAE---SPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGM 139 (381)
Q Consensus 63 vlviG~~~iD~~~~~~~~~~~~---~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v 139 (381)
+.+..++++|.+..+++.+... .......+||++.|+|++|++||.++.++|.+|+ .+|+++++.|++ ||+++++
T Consensus 3 ~~~t~np~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~~l~~-gI~~~~~ 80 (309)
T PRK13508 3 LTVTLNPSIDISYPLDELKLDTVNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAEHLDD-QIKHAFY 80 (309)
T ss_pred EEEecChHHeEEEEeCCeeeCCeEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHc-CCCceEE
Confidence 4566899999998888775542 3457789999999999999999999999999996 689999999999 9999876
Q ss_pred eecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccc------hhhcCCccEEEEccccccCchhHHHHHHHHHHH
Q 016868 140 RFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELD------LSLITKAKIFHYGSISLITEPCKSAHIAAAKAA 213 (381)
Q Consensus 140 ~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 213 (381)
.. ++ .|+.++++++ +|++++...++ .. +..+... .+.++++|++|+++... ...+.+....+++.+
T Consensus 81 ~~-~~-~t~~~~~~~~-~g~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~~~~~a 152 (309)
T PRK13508 81 KI-KG-ETRNCIAILH-EGQQTEILEKG--PE--ISVQEADGFLHHFKQLLESVEVVAISGSLP-AGLPVDYYAQLIELA 152 (309)
T ss_pred EC-CC-CCeeeEEEEe-CCCEEEEECCC--CC--CCHHHHHHHHHHHHHhccCCCEEEEeCCCC-CCcCHHHHHHHHHHH
Confidence 54 33 5677777665 68888776533 22 3332211 24578999999988643 223346677888999
Q ss_pred HHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCC-ChH---HHHHHHHhcCCCEEEEEec
Q 016868 214 KDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDP-YDD---AVVYKLFHANLKLLLVTEG 289 (381)
Q Consensus 214 ~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~-~~~---~~~~~l~~~g~~~vvvt~G 289 (381)
++.|+++++|++.. . ...+...+..+|++++|++|++.+++.... +.+ +.++.+...|++.|+||+|
T Consensus 153 ~~~g~~v~~D~~~~--------~-~~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vvvT~G 223 (309)
T PRK13508 153 NQAGKPVVLDCSGA--------A-LQAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVLQQPLFEGIEWIIVSLG 223 (309)
T ss_pred HHCCCEEEEECCcH--------H-HHHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 99999999999621 1 122223356899999999999999987532 222 3334555679999999999
Q ss_pred CCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCH
Q 016868 290 PDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTR 369 (381)
Q Consensus 290 ~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~ 369 (381)
++|++++.+++.+++|+++++++|||||||+|+|||+++|++|++ +++|+++|+++|++++++.+.. ..++
T Consensus 224 ~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Agfi~~l~~g~~-------~~~al~~a~a~aa~~~~~~~~~--~~~~ 294 (309)
T PRK13508 224 ADGAFAKHNDTFYKVDIPKIEVVNPVGSGDSTVAGIASGLLHQED-------DADLLKKANVLGMLNAQEKQTG--HVNM 294 (309)
T ss_pred CCceEEEeCCceEEEeCCCccccCCcChhHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcCcC--CCCH
Confidence 999999988888889999999999999999999999999999999 9999999999999999999975 4788
Q ss_pred HHHHHHHhCC
Q 016868 370 EAVLNAIHAP 379 (381)
Q Consensus 370 ~~v~~~l~~~ 379 (381)
+++++++++|
T Consensus 295 ~~~~~~~~~i 304 (309)
T PRK13508 295 ANYDELYNQI 304 (309)
T ss_pred HHHHHHHhce
Confidence 9999998876
No 35
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=100.00 E-value=6.9e-40 Score=306.35 Aligned_cols=293 Identities=19% Similarity=0.185 Sum_probs=229.4
Q ss_pred EEEccceeecccCCCCCCcc---CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCee
Q 016868 64 VCFGEMLIDFVPTVSGLSLA---ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMR 140 (381)
Q Consensus 64 lviG~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~ 140 (381)
.|.=++++|.+..+++.+.. ...++..++||++.|+|++|++||.++.++|.+|+| +|+++++.|++.||+++++.
T Consensus 3 ~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~-~G~~i~~~l~~~GV~~~~~~ 81 (309)
T TIGR01231 3 TVTLNPSVDISYPLTALKLDTVNRVQEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGK-LGEFIEKELDHSDIKHAFYK 81 (309)
T ss_pred EEEcchHHeEEEEcCCeeeCceEeeceeeecCCccHHHHHHHHHHcCCCeEEEEEecCh-hHHHHHHHHHHcCCceeEEE
Confidence 34457788988877776554 345578899999999999999999999999999975 99999999999999999887
Q ss_pred ecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccc--hhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCC
Q 016868 141 FDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELD--LSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGV 218 (381)
Q Consensus 141 ~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~ 218 (381)
..+ .|+.++.+++ +|++++.++++.........+.+. .+.+++++++|+++... ...+...+.++++.+++.|+
T Consensus 82 ~~~--~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~-~~~~~~~~~~~~~~a~~~g~ 157 (309)
T TIGR01231 82 ISG--ETRNCIAILH-EGQQTEILEQGPEISNQEAAGFLKHFEQLLEKVEVVAISGSLP-KGLPQDYYAQIIERCQNKGV 157 (309)
T ss_pred CCC--CCEEeEEEEe-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCEEEEECCCC-CCcCHHHHHHHHHHHHhCCC
Confidence 654 4555555553 688888765332111000111111 24578899999988643 23346777899999999999
Q ss_pred eEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCC-ChH---HHHHHHHhcCCCEEEEEecCCceE
Q 016868 219 VLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDP-YDD---AVVYKLFHANLKLLLVTEGPDGCR 294 (381)
Q Consensus 219 ~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~-~~~---~~~~~l~~~g~~~vvvt~G~~G~~ 294 (381)
++++|++.+ . ...+...++++|++++|++|++.+++.... +.+ +.++.+...|++.|+||+|++|++
T Consensus 158 ~v~~D~~~~--------~-~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~~~g~~~vivT~G~~G~~ 228 (309)
T TIGR01231 158 PVVLDCSGA--------T-LQTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALSQPLFSGIEWIIVSLGAQGAF 228 (309)
T ss_pred eEEEECChH--------H-HHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCceE
Confidence 999999631 1 122334457899999999999999986533 223 334455568999999999999999
Q ss_pred EEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHH
Q 016868 295 YYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAVLN 374 (381)
Q Consensus 295 ~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~~~v~~ 374 (381)
++.+++.+++++++++++|||||||+|+|||++++++|++ +++|+++|+++|++++++.+.. ..+++++++
T Consensus 229 ~~~~~~~~~~~~~~v~vvDttGAGDaF~agfl~~l~~g~~-------~~~a~~~a~a~aa~~~~~~~~~--~~~~~~~~~ 299 (309)
T TIGR01231 229 AKHGHTFYKVNIPTISVVNPVGSGDSTVAGITSALLNHES-------DHDLLKKANTLGMLNAQEAQTG--HVNLNNYDD 299 (309)
T ss_pred EEeCCeeEEeeCCccCcCCCcchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCcccC--CCCHHHHHH
Confidence 9988888889999999999999999999999999999999 9999999999999999998875 478999999
Q ss_pred HHhCC
Q 016868 375 AIHAP 379 (381)
Q Consensus 375 ~l~~~ 379 (381)
++++|
T Consensus 300 ~~~~i 304 (309)
T TIGR01231 300 LFNQI 304 (309)
T ss_pred HHhce
Confidence 98876
No 36
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=8.3e-40 Score=302.92 Aligned_cols=275 Identities=27% Similarity=0.321 Sum_probs=222.3
Q ss_pred cEEEEccceeecccCCCCCCccC---CCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCC
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLAE---SPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAG 138 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~~---~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~ 138 (381)
.|+++|++++|++..+++.|.+. .......+||++.|+|.+|++||.++.++|.+|+|.+|+.+++.|++.||+++.
T Consensus 1 ~v~~~G~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~L~~~gI~~~~ 80 (288)
T cd01941 1 EIVVIGAANIDLRGKVSGSLVPGTSNPGHVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEESEKAGLNVRG 80 (288)
T ss_pred CeEEEEeEEEeeeecccCccccCCCCCeeEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHHHHHcCCccce
Confidence 38999999999998877755431 234678899999999999999999999999999999999999999999999998
Q ss_pred eeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccc--hhhcCCccEEEEccccccCchhHHHHHHHHHHHHHC
Q 016868 139 MRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELD--LSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDA 216 (381)
Q Consensus 139 v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 216 (381)
+. .++.+|+.++++++.+|++++... .......++.+.++ .+.+.+++++++++ ..+++....+++.+++.
T Consensus 81 ~~-~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~-----~~~~~~~~~~~~~a~~~ 153 (288)
T cd01941 81 IV-FEGRSTASYTAILDKDGDLVVALA-DMDIYELLTPDFLRKIREALKEAKPIVVDA-----NLPEEALEYLLALAAKH 153 (288)
T ss_pred ee-eCCCCcceEEEEECCCCCEEEEEe-chHhhhhCCHHHHHHHHHHHhcCCEEEEeC-----CCCHHHHHHHHHhhhhc
Confidence 87 667789999999998999887332 23333334433222 34578899997754 23455677888889999
Q ss_pred CCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCCh---HHHHHHHHhcCCCEEEEEecCCce
Q 016868 217 GVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYD---DAVVYKLFHANLKLLLVTEGPDGC 293 (381)
Q Consensus 217 g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~---~~~~~~l~~~g~~~vvvt~G~~G~ 293 (381)
+.++++||+... ..++. .++++++|++++|++|++.+++....+. .++++.+.+.+++.||||+|++|+
T Consensus 154 ~~~v~~d~~~~~-------~~~~~-~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvit~G~~Ga 225 (288)
T cd01941 154 GVPVAFEPTSAP-------KLKKL-FYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKILLLPGIKNVIVTLGAKGV 225 (288)
T ss_pred CCcEEEEccchH-------Hhccc-hhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHHHHHcCCcEEEEEeCCCcE
Confidence 999999986321 11211 1578899999999999999998754322 244567778899999999999999
Q ss_pred EEEeC---CceEEEcc-ccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhh
Q 016868 294 RYYTK---DFSGRVQG-LKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVM 358 (381)
Q Consensus 294 ~~~~~---~~~~~~~~-~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~ 358 (381)
+++++ +..+++|+ ++++++||+||||+|.|||++++++|++ +++|+++|+++|+.+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~g~~-------~~~al~~a~~~Aa~~~~ 287 (288)
T cd01941 226 LLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLEGMS-------LDDSLRFAQAAAALTLE 287 (288)
T ss_pred EEEecCCCceeEEecCCCCccceeCCCcHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhc
Confidence 99987 46678888 5789999999999999999999999999 99999999999999986
No 37
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=100.00 E-value=1.6e-39 Score=303.20 Aligned_cols=284 Identities=26% Similarity=0.305 Sum_probs=229.2
Q ss_pred cceeecccCCCCCCcc---CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCC
Q 016868 68 EMLIDFVPTVSGLSLA---ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPG 144 (381)
Q Consensus 68 ~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~ 144 (381)
++.+|++..+++.+.. ...+....+||.+.|+|.++++||.++.++|.+|+| +|+.+++.|++.||++.++....
T Consensus 7 ~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~~gI~~~~i~~~~- 84 (303)
T TIGR03168 7 NPAIDLTIEVDGLTPGEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAEEGIKNDFVEVKG- 84 (303)
T ss_pred chHHeEEEEcCccccCceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHHcCCCceEEECCC-
Confidence 4567777766664332 244567899999999999999999999999999999 79999999999999999887653
Q ss_pred CCceEEEEEecCCCCceEEEecCCCccccCChhccch------hhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCC
Q 016868 145 ARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDL------SLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGV 218 (381)
Q Consensus 145 ~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~ 218 (381)
.|+.++++.+.+|++..+.+. +. .+++++++. +.+++++++|++++.. ...+.+....+++.++++|+
T Consensus 85 -~t~~~~~~~~~~g~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~~~~~~g~ 158 (303)
T TIGR03168 85 -ETRINVKIKESSGEETELNEP--GP--EISEEELEQLLEKLRELLASGDIVVISGSLP-PGVPPDFYAQLIAIARKRGA 158 (303)
T ss_pred -CCEEeEEEEeCCCCEEEEeCc--CC--CCCHHHHHHHHHHHHHhccCCCEEEEeCCCC-CCCCHHHHHHHHHHHHHCCC
Confidence 466677777778877655442 22 255544431 3478999999987532 23345677888999999999
Q ss_pred eEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCCh---HHHHHHHHhcCCCEEEEEecCCceEE
Q 016868 219 VLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYD---DAVVYKLFHANLKLLLVTEGPDGCRY 295 (381)
Q Consensus 219 ~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~---~~~~~~l~~~g~~~vvvt~G~~G~~~ 295 (381)
++++|++.. ..+ ..+..++|++++|+.|+..+++....+. .++++.+.+.+++.||||+|++|+++
T Consensus 159 ~v~~D~~~~--------~~~---~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~g~~~vviT~g~~G~~~ 227 (303)
T TIGR03168 159 KVILDTSGE--------ALR---EALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARELLDRGAENVLVSLGADGALL 227 (303)
T ss_pred EEEEECCcH--------HHH---HHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEeecCCCcEE
Confidence 999999621 112 2233579999999999999998754432 34557778889999999999999999
Q ss_pred EeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHH
Q 016868 296 YTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAVLNA 375 (381)
Q Consensus 296 ~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~~~v~~~ 375 (381)
+++++.+++|+++++++||+||||+|.|+|++++++|++ +++|+++|+++|++++++.|+. .|+.++++++
T Consensus 228 ~~~~~~~~~~~~~~~~vDttGAGD~F~a~~~~~l~~g~~-------i~~a~~~A~~~aa~~~~~~G~~--~~~~~~~~~~ 298 (303)
T TIGR03168 228 VTKEGALKATPPKVEVVNTVGAGDSMVAGFLAGLARGLS-------LEEALRFAVAAGSAAAFSPGTG--LPDPEDVEEL 298 (303)
T ss_pred EeCCceEEeeCCcceeecCcCHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCcC--CCCHHHHHHH
Confidence 998888899999999999999999999999999999999 9999999999999999999984 5899999999
Q ss_pred HhCC
Q 016868 376 IHAP 379 (381)
Q Consensus 376 l~~~ 379 (381)
+.++
T Consensus 299 ~~~~ 302 (303)
T TIGR03168 299 LDQV 302 (303)
T ss_pred Hhhc
Confidence 8875
No 38
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=100.00 E-value=2.5e-39 Score=302.53 Aligned_cols=291 Identities=21% Similarity=0.218 Sum_probs=233.1
Q ss_pred EEEEccceeecccCCCCCCcc---CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCe
Q 016868 63 VVCFGEMLIDFVPTVSGLSLA---ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGM 139 (381)
Q Consensus 63 vlviG~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v 139 (381)
+.+.=++.+|+++.+++.+.. ........+||++.|+|++|++||.++.+++.+|+ .+|+++++.|++.||+++++
T Consensus 5 ~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~l~~~gv~~~~~ 83 (309)
T PRK10294 5 YTLTLAPSLDSATITPQIYPEGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSLLADENVPVATV 83 (309)
T ss_pred EEEecChHHeEEEEeCceeeCCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHHHHHcCCCceEE
Confidence 334458999999988876543 34566788999999999999999999999999997 69999999999999999999
Q ss_pred eecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccch-----hhcCCccEEEEccccccCchhHHHHHHHHHHHH
Q 016868 140 RFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDL-----SLITKAKIFHYGSISLITEPCKSAHIAAAKAAK 214 (381)
Q Consensus 140 ~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 214 (381)
...++. +...++..+++|++++..+. +.. ++.++++. ..++++++++++++.. ...+.+.+.++++.++
T Consensus 84 ~~~~~~-~~~~~i~~~~~g~~~~~~~~--~~~--~~~~~~~~l~~~~~~~~~~~~~~i~g~~~-~~~~~~~~~~~~~~a~ 157 (309)
T PRK10294 84 EAKDWT-RQNLHVHVEASGEQYRFVMP--GAA--LNEDEFRQLEEQVLEIESGAILVISGSLP-PGVKLEKLTQLISAAQ 157 (309)
T ss_pred ECCCCC-eeeEEEEEcCCCcEEEEECC--CCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCCC-CCCCHHHHHHHHHHHH
Confidence 876553 33344566778887766542 222 44444332 2367889999987643 3345677889999999
Q ss_pred HCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCCh---HHHHHHHHhcC-CCEEEEEecC
Q 016868 215 DAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYD---DAVVYKLFHAN-LKLLLVTEGP 290 (381)
Q Consensus 215 ~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~---~~~~~~l~~~g-~~~vvvt~G~ 290 (381)
+.|+++++|++. ...+..+ .++++|++++|++|+..|++....+. +++++.+++.+ ++.||||+|+
T Consensus 158 ~~g~~v~~D~~~--------~~~~~~~--~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l~~~~~~~~vvvT~G~ 227 (309)
T PRK10294 158 KQGIRCIIDSSG--------DALSAAL--AIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQELVNSGKAKRVVVSLGP 227 (309)
T ss_pred HcCCeEEEeCCC--------HHHHHHH--hcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 999999999952 1112211 24679999999999999998764433 35567777776 8999999999
Q ss_pred CceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHH
Q 016868 291 DGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTRE 370 (381)
Q Consensus 291 ~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~~ 370 (381)
+|++++++++.+++++++++++||+||||+|+|||++++++|++ +++|+++|+++|++++++.|+.. ..++
T Consensus 228 ~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~ag~l~~l~~g~~-------~~~al~~a~a~aa~~v~~~G~~~--~~~~ 298 (309)
T PRK10294 228 QGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENAS-------LEEMVRFGVAAGSAATLNQGTRL--CSHD 298 (309)
T ss_pred CceEEEcCCccEEEeCCCcccCCCcchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCCCCCC--CCHH
Confidence 99999988888889998999999999999999999999999999 99999999999999999999864 6888
Q ss_pred HHHHHHhCC
Q 016868 371 AVLNAIHAP 379 (381)
Q Consensus 371 ~v~~~l~~~ 379 (381)
+++++++++
T Consensus 299 ~~~~~~~~~ 307 (309)
T PRK10294 299 DTQKIYAYL 307 (309)
T ss_pred HHHHHHHHh
Confidence 999888764
No 39
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=100.00 E-value=1.1e-38 Score=295.50 Aligned_cols=274 Identities=25% Similarity=0.271 Sum_probs=222.7
Q ss_pred cEEEEccceeecccCCCCCCcc---CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCC
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLA---ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAG 138 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~ 138 (381)
-..++|+.++|++..+++.+.. ........+||++.|+|.+|++||.++.++|.+|+| +|+++++.|++.||++.+
T Consensus 2 ~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~l~~~gi~~~~ 80 (289)
T cd01164 2 IYTVTLNPAIDLTIELDQLQPGEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEALLKEEGIPDDF 80 (289)
T ss_pred EEEEecChHHeEEEEcCcccCCceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHHHHHcCCCceE
Confidence 3568899999999999887644 345677899999999999999999999999999999 899999999999999998
Q ss_pred eeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccch------hhcCCccEEEEccccccCchhHHHHHHHHHH
Q 016868 139 MRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDL------SLITKAKIFHYGSISLITEPCKSAHIAAAKA 212 (381)
Q Consensus 139 v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (381)
+.... .|++.+++.+.+|+++.+.. ... .+++++++. +.+++++++|+++.... ....+....+++.
T Consensus 81 ~~~~~--~t~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~~~~~~~~~~~~ 153 (289)
T cd01164 81 VEVAG--ETRINVKIKEEDGTETEINE--PGP--EISEEELEALLEKLKALLKKGDIVVLSGSLPP-GVPADFYAELVRL 153 (289)
T ss_pred EECCC--CCEEEEEEEeCCCCEEEEeC--CCC--CCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-CcCHHHHHHHHHH
Confidence 87653 46777777777677665543 222 244444321 34678999999875322 2234567788888
Q ss_pred HHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHh-hhCCEEecCHHHHhhccCCCCCCh---HHHHHHHHhcCCCEEEEEe
Q 016868 213 AKDAGVVLSYDPNLRLPLWPSADKAREGILSIW-ETADIIKISEEEISFLTQGEDPYD---DAVVYKLFHANLKLLLVTE 288 (381)
Q Consensus 213 a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l-~~~dvl~~N~~E~~~l~~~~~~~~---~~~~~~l~~~g~~~vvvt~ 288 (381)
+++.++++++|++.+ ..+ +++ +.+|++++|++|++.+++....+. .++++.+.+.+++.|+||+
T Consensus 154 ~~~~~~~i~~D~~~~--------~~~----~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vivt~ 221 (289)
T cd01164 154 AREKGARVILDTSGE--------ALL----AALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKLIERGAENVLVSL 221 (289)
T ss_pred HHHcCCeEEEECChH--------HHH----HHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 999999999999631 112 333 699999999999999998754332 3456778889999999999
Q ss_pred cCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCC
Q 016868 289 GPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGA 362 (381)
Q Consensus 289 G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~ 362 (381)
|++|++++.+++.+++++++++++||+||||+|+|||++++++|++ +++|+++|+++|+.++++.|+
T Consensus 222 G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~-------~~~a~~~A~~~Aa~~~~~~G~ 288 (289)
T cd01164 222 GADGALLVTKDGVYRASPPKVKVVSTVGAGDSMVAGFVAGLAQGLS-------LEEALRLAVAAGSATAFSPGT 288 (289)
T ss_pred CCCCCEEEcCCcEEEecCCCccccCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhcCccC
Confidence 9999999988888899999999999999999999999999999999 999999999999999999985
No 40
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=7e-38 Score=292.76 Aligned_cols=274 Identities=20% Similarity=0.235 Sum_probs=221.0
Q ss_pred CCCCCcEEEEccceeecccCCCCCCccCCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCC
Q 016868 57 TRESPLVVCFGEMLIDFVPTVSGLSLAESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNG 136 (381)
Q Consensus 57 ~~~~~~vlviG~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~ 136 (381)
+.+.++|+|+|++++|++....+ .....+||+++|+|.+|+|||.++.++|++|+|.. .+++.
T Consensus 8 ~~~~~~vlvvG~~~~D~i~~~g~-------~~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~----------~~v~~ 70 (335)
T PLN02630 8 PIPQRRVLIVGNYCHDVLIQNGS-------VTAESLGGAASFISNVLDALSVECELVSKVGPDFL----------YQVSH 70 (335)
T ss_pred CCCCCCEEEEeeeeeeEEEeCCc-------EEEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc----------ccccc
Confidence 45668999999999999977532 14578999999999999999999999999999942 36776
Q ss_pred CCeeecCCCCceEEEEEecC-----CCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHH
Q 016868 137 AGMRFDPGARTALAFVTLRS-----DGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAK 211 (381)
Q Consensus 137 ~~v~~~~~~~t~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (381)
..+.. ++.+|+.+++++++ +|++++... .+++..+++++++...+..++++++.+ +.+.+....+++
T Consensus 71 ~~~~~-~~~~T~~~~~~~~~g~~~~~~e~~i~~~--~ga~~~l~~~di~~~~~~~~~~~~l~~-----ei~~e~~~~~~~ 142 (335)
T PLN02630 71 PPIVI-PDSKTTEFHADFDQGIDGNGHEDRVLKR--VCACDPIEPSDIPDMRYEFGMAVGVAG-----EILPETLERMVE 142 (335)
T ss_pred cceec-CCCCceEEEEEEcCCcccCCCCeEEEEe--ccccCCCChHHCCHHHhcccceeeecC-----CCcHHHHHHHHH
Confidence 55544 67789999988776 567777664 677778888888755567777776543 334567888888
Q ss_pred HHHH-----CCCeEEEeCCCC-CCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEE
Q 016868 212 AAKD-----AGVVLSYDPNLR-LPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLL 285 (381)
Q Consensus 212 ~a~~-----~g~~v~~D~~~~-~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vv 285 (381)
.++. +|+.+++||+.. ..+|... ...+.++++++|++++|++|++.+ +.+++ .+ ...|+
T Consensus 143 ~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~---~~~~~~~L~~iDil~~ne~Ea~~l------~~~~~----~~--~~~vv 207 (335)
T PLN02630 143 ICDVVVVDIQALIRVFDPVDGTVKLVKLE---ETGFYDMLPRIGFLKASSEEALFI------DVEEV----RQ--KCCVI 207 (335)
T ss_pred HhhhheeccCceEEecCCcccccccchhh---HHHHHHHHHhCCEEEecHHHHhhc------CHHHH----cc--CCEEE
Confidence 8887 789999999763 4445211 123567899999999999999887 11222 12 24899
Q ss_pred EEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 016868 286 VTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPA 365 (381)
Q Consensus 286 vt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~ 365 (381)
||+|++|++++.+++.+++|+++++++|||||||+|+|||++++++|++ +++|+++|+++|++++++.|. .
T Consensus 208 vt~G~~G~~~~~~~~~~~~~~~~v~~vDttGAGDaF~agfi~~l~~g~~-------~~~a~~~A~a~aa~~v~~~G~--~ 278 (335)
T PLN02630 208 VTNGKKGCRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGGFVAGLVQGLA-------VPDAALLGNYFGSLAVEQVGI--P 278 (335)
T ss_pred EEECCCceEEEECCeeEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhCcCCC--C
Confidence 9999999999998888899999999999999999999999999999999 999999999999999999995 3
Q ss_pred CCCHHHHHHHHhCC
Q 016868 366 LPTREAVLNAIHAP 379 (381)
Q Consensus 366 ~~~~~~v~~~l~~~ 379 (381)
..++++++++++++
T Consensus 279 ~~~~~~l~~~~~~i 292 (335)
T PLN02630 279 KFDLRQLQRVKDEV 292 (335)
T ss_pred CCCHHHHHHHhhcE
Confidence 46999999998775
No 41
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=100.00 E-value=3e-38 Score=311.78 Aligned_cols=288 Identities=21% Similarity=0.213 Sum_probs=224.7
Q ss_pred CcEEEEccceeecccCCC--CC----Cc--cCCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHC
Q 016868 61 PLVVCFGEMLIDFVPTVS--GL----SL--AESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKEN 132 (381)
Q Consensus 61 ~~vlviG~~~iD~~~~~~--~~----~~--~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~ 132 (381)
++|+|+|++++|++...+ .. |. .........+|| +.|+|.+|++||.++.++|.+|+|.+|+++++.|++.
T Consensus 11 ~~ilviG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~~~ 89 (473)
T PRK11316 11 AGVLVVGDVMLDRYWYGPTSRISPEAPVPVVKVNQIEERPGG-AANVAMNIASLGAQARLVGLTGIDEAARALSKLLAAV 89 (473)
T ss_pred CcEEEECccEEeeeeecccceeCCCCCCCEEEeeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHHHHHHHHHc
Confidence 579999999999987642 21 11 123456778999 5999999999999999999999999999999999999
Q ss_pred CCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccc---hhhcCCccEEEEccccccCchhHHHHHHH
Q 016868 133 NVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELD---LSLITKAKIFHYGSISLITEPCKSAHIAA 209 (381)
Q Consensus 133 gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (381)
||+++++.+ ++.+|+.++++++.+++...... . ........+.+. .+.++++++++++++.. ...+....+
T Consensus 90 gI~~~~v~~-~~~~T~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~l~~~~~v~is~~~~---~~~~~~~~~ 163 (473)
T PRK11316 90 GVKCDFVSV-PTHPTITKLRVLSRNQQLIRLDF-E-EGFEGVDPQPLLERIEQALPSIGALVLSDYAK---GALASVQAM 163 (473)
T ss_pred CCceeEEEc-CCCCCCeeEEEEeCCceEEeccc-c-cCCCchhHHHHHHHHHHHhccCCEEEEecCCc---cchhHHHHH
Confidence 999998876 56689888888875544222111 1 111122333322 24578999999876532 112456788
Q ss_pred HHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCCh--HHHHHHH-HhcCCCEEEE
Q 016868 210 AKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYD--DAVVYKL-FHANLKLLLV 286 (381)
Q Consensus 210 l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~--~~~~~~l-~~~g~~~vvv 286 (381)
++.+++.|+++++||+.... ..++.+|++++|++|++.+++...... .+.++.+ .+.|++.|+|
T Consensus 164 ~~~~k~~g~~vv~Dp~~~~~-------------~~~~~~dil~pN~~Ea~~l~g~~~~~~~~~~~~~~l~~~~g~~~vvV 230 (473)
T PRK11316 164 IQLARKAGVPVLIDPKGTDF-------------ERYRGATLLTPNLSEFEAVVGKCKDEAELVEKGMKLIADYDLSALLV 230 (473)
T ss_pred HHHHHhcCCeEEEeCCCCCc-------------cccCCCeEECcCHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 88999999999999964210 235679999999999999998532211 1233444 4689999999
Q ss_pred EecCCceEEEeCCc-eEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 016868 287 TEGPDGCRYYTKDF-SGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPA 365 (381)
Q Consensus 287 t~G~~G~~~~~~~~-~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~ 365 (381)
|+|++|++++.+++ .+++|+++++++||+||||+|+|||++++++|++ +++|+++|+++|++++++.|+.+
T Consensus 231 T~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~aa~~~~l~~g~~-------~~~al~~A~a~Aa~~v~~~G~~~- 302 (473)
T PRK11316 231 TRSEQGMTLLQPGKAPLHLPTQAREVYDVTGAGDTVISVLAAALAAGNS-------LEEACALANAAAGVVVGKLGTST- 302 (473)
T ss_pred EecCCCcEEEecCCceEEecCcCCCCCCCCCCcHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHhhcccCCCcc-
Confidence 99999999888775 4789999999999999999999999999999999 99999999999999999999864
Q ss_pred CCCHHHHHHHHh
Q 016868 366 LPTREAVLNAIH 377 (381)
Q Consensus 366 ~~~~~~v~~~l~ 377 (381)
++.++++++++
T Consensus 303 -~~~~~l~~~l~ 313 (473)
T PRK11316 303 -VSPIELENALR 313 (473)
T ss_pred -CCHHHHHHHHh
Confidence 78999998887
No 42
>PLN02548 adenosine kinase
Probab=100.00 E-value=3.7e-38 Score=297.64 Aligned_cols=263 Identities=21% Similarity=0.271 Sum_probs=208.3
Q ss_pred CCCccccCCChHHHHHH---HHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCce
Q 016868 85 SPAFKKAPGGAPANVAV---GIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGERE 161 (381)
Q Consensus 85 ~~~~~~~~GG~~~NvA~---~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~ 161 (381)
...+...+||++.|+|. .++++|.++.++|.+|+|.+|+++++.|+++||+++++. .++.+|++++++++ +|+|+
T Consensus 44 ~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~D~~g~~i~~~L~~~gVd~~~~~-~~~~~T~~~~i~~~-~g~r~ 121 (332)
T PLN02548 44 KYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKCATAAGVNVHYYE-DESTPTGTCAVLVV-GGERS 121 (332)
T ss_pred cCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcCChhHHHHHHHHHHcCCceeeec-cCCCCCceEEEEEe-cCCce
Confidence 34577889999999755 446679999999999999999999999999999999875 46678999988886 78988
Q ss_pred EEEecCCCccccCChhccc----hhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHH
Q 016868 162 FMFYRNPSADMLLQEAELD----LSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKA 237 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~l~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~ 237 (381)
+..+ .++...++.+++. .+.+++++++|++++.+. .+.+....+++.+++++.++.+|+.. ++|. ...
T Consensus 122 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~--~~~~~~~~~~~~a~~~g~~~~~~~~~--~~~~--~~~ 193 (332)
T PLN02548 122 LVAN--LSAANCYKVEHLKKPENWALVEKAKFYYIAGFFLT--VSPESIMLVAEHAAANNKTFMMNLSA--PFIC--EFF 193 (332)
T ss_pred eeec--cchhhcCCHHHhcChhhHhHHhhCCEEEEEEEEcc--CCHHHHHHHHHHHHHcCCEEEEECCC--hhHH--HHh
Confidence 8665 2333344444332 245778999999886442 33467778888899999887777642 3342 223
Q ss_pred HHHHHHHhhhCCEEecCHHHHhhccCCCC---CChHHHHHHHHhc------CCCEEEEEecCCceEEEeCCceEEEccc-
Q 016868 238 REGILSIWETADIIKISEEEISFLTQGED---PYDDAVVYKLFHA------NLKLLLVTEGPDGCRYYTKDFSGRVQGL- 307 (381)
Q Consensus 238 ~~~~~~~l~~~dvl~~N~~E~~~l~~~~~---~~~~~~~~~l~~~------g~~~vvvt~G~~G~~~~~~~~~~~~~~~- 307 (381)
++.+.++++++|++++|++|++.+++... .+.++.++.+.+. +++.||||+|++|++++.+++.+++|+.
T Consensus 194 ~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~ 273 (332)
T PLN02548 194 KDQLMEALPYVDFLFGNETEARTFAKVQGWETEDVEEIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVKEFPVIP 273 (332)
T ss_pred HHHHHHHHhhCCEEEecHHHHHHHhCccCCCcccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEEEecccc
Confidence 55688899999999999999999987532 2333444444432 5789999999999999988888887763
Q ss_pred --cccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCC
Q 016868 308 --KVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIP 364 (381)
Q Consensus 308 --~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~ 364 (381)
+++++|||||||+|+|||++++++|++ +++|+++|+++|++++++.|+..
T Consensus 274 ~~~~~vvDttGAGDaF~ag~l~~l~~g~~-------l~eal~~a~aaAa~~v~~~G~~~ 325 (332)
T PLN02548 274 LPKEKLVDTNGAGDAFVGGFLSQLVQGKD-------IEECVRAGNYAANVIIQRSGCTY 325 (332)
T ss_pred CCcCccccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHHhccCCCC
Confidence 357999999999999999999999999 99999999999999999999874
No 43
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.4e-38 Score=280.83 Aligned_cols=285 Identities=25% Similarity=0.323 Sum_probs=235.6
Q ss_pred ccceeecccCCCCCCcc---CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeeecC
Q 016868 67 GEMLIDFVPTVSGLSLA---ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDP 143 (381)
Q Consensus 67 G~~~iD~~~~~~~~~~~---~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~ 143 (381)
=+..+|++..+++.... +.......+||+|.|||..|+.||.++..+|++|.+ .|++|.+.|++.||..+++.+..
T Consensus 7 LNPaiD~~~~l~~l~~g~vNr~~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~-tg~~~~~~l~~~gi~~~fv~v~g 85 (310)
T COG1105 7 LNPALDYTVFLDELELGEVNRVRAVTKTAGGKGINVARVLKDLGIPVTALGFLGGF-TGEFFVALLKDEGIPDAFVEVKG 85 (310)
T ss_pred cChhHhheeecccccccceeeeccceecCCCCceeHHHHHHHcCCCceEEEecCCc-cHHHHHHHHHhcCCCceEEEccC
Confidence 36778888877666553 345567899999999999999999999999999997 89999999999999999998877
Q ss_pred CCCceEEEEEecC-CCCceEEEecCCCccccCChhccch------hhcCCccEEEEccccccCchhHHHHHHHHHHHHHC
Q 016868 144 GARTALAFVTLRS-DGEREFMFYRNPSADMLLQEAELDL------SLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDA 216 (381)
Q Consensus 144 ~~~t~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~l~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 216 (381)
.+|+++.+ .+. +|+.+-+.. ++ ..++++++.. ..+++.|++.++|- +....+.+.+.++++.+++.
T Consensus 86 ~TRinvki--~~~~~~~~Tein~--~G--p~is~~~~~~~l~~~~~~l~~~d~VvlsGS-lP~g~~~d~y~~li~~~~~~ 158 (310)
T COG1105 86 DTRINVKI--LDEEDGEETEINF--PG--PEISEAELEQFLEQLKALLESDDIVVLSGS-LPPGVPPDAYAELIRILRQQ 158 (310)
T ss_pred CCeeeEEE--EecCCCcEEEecC--CC--CCCCHHHHHHHHHHHHHhcccCCEEEEeCC-CCCCCCHHHHHHHHHHHHhc
Confidence 66655554 444 444444432 33 3366665542 34778899888773 44566788999999999999
Q ss_pred CCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChH---HHHHHHHhcCCCEEEEEecCCce
Q 016868 217 GVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDD---AVVYKLFHANLKLLLVTEGPDGC 293 (381)
Q Consensus 217 g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~---~~~~~l~~~g~~~vvvt~G~~G~ 293 (381)
|+++++|.. .+.+.+.++ ..+++++||.+|++.++|....+.+ ++++.++..|+++|||++|.+|+
T Consensus 159 g~~vilD~S--------g~~L~~~L~---~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~g~~~ViVSlG~~Ga 227 (310)
T COG1105 159 GAKVILDTS--------GEALLAALE---AKPWLIKPNREELEALFGRELTTLEDVIKAARELLAEGIENVIVSLGADGA 227 (310)
T ss_pred CCeEEEECC--------hHHHHHHHc---cCCcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHCCCCEEEEEecCccc
Confidence 999999985 334444433 3599999999999999999877543 45566888999999999999999
Q ss_pred EEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHH
Q 016868 294 RYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPALPTREAVL 373 (381)
Q Consensus 294 ~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~~~~~~~v~ 373 (381)
++.+++..+++.+|++++++|+||||++.|||+++++++++ +++++++|+++|+.++++.+. +.++.++++
T Consensus 228 l~~~~~~~~~a~~p~~~vvstVGAGDs~VAGf~~~~~~~~~-------~e~~l~~avA~g~a~~~~~~~--~~~~~~~~~ 298 (310)
T COG1105 228 LLVTAEGVYFASPPKVQVVSTVGAGDSMVAGFLAGLLKGKS-------LEEALRFAVACGAAAASQKGT--GIPDLDQLK 298 (310)
T ss_pred EEEccCCeEEEeCCCcceecCcCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhhcCCC--CCCCHHHHH
Confidence 99999999999999999999999999999999999999999 999999999999999999997 568999999
Q ss_pred HHHhCC
Q 016868 374 NAIHAP 379 (381)
Q Consensus 374 ~~l~~~ 379 (381)
++++++
T Consensus 299 ~~~~~v 304 (310)
T COG1105 299 KIYAQV 304 (310)
T ss_pred HHhhhe
Confidence 998875
No 44
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1.1e-36 Score=276.87 Aligned_cols=254 Identities=21% Similarity=0.240 Sum_probs=199.9
Q ss_pred cEEEEccceeecccCCCCCCccCCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeee
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLAESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRF 141 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~ 141 (381)
+|+++|++++|++...+ .....+||++.|+|.+|++||.++.++|.+|+|.+|+ ++.|++.||++.. .
T Consensus 1 ~il~iG~~~iD~~~~~~--------~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~~l~~~gv~~~~--~ 68 (254)
T cd01937 1 KIVIIGHVTIDEIVTNG--------SGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WSDLFDNGIEVIS--L 68 (254)
T ss_pred CeEEEcceeEEEEecCC--------ceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HHHHHHCCcEEEE--e
Confidence 58999999999998632 3467899999999999999999999999999999998 6889999999642 2
Q ss_pred cCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEE
Q 016868 142 DPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLS 221 (381)
Q Consensus 142 ~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~ 221 (381)
...+|+.+++.++.+|++.+..+.. ........ ...+.++|++|++++. .+....+.+. ..+|+
T Consensus 69 -~~~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~----~~~v~ 132 (254)
T cd01937 69 -LSTETTTFELNYTNEGRTRTLLAKC--AAIPDTES---PLSTITAEIVILGPVP------EEISPSLFRK----FAFIS 132 (254)
T ss_pred -cCCCeEEEEEEecCCCCeeeeeccc--cCCccccc---ccccCcccEEEECCCc------chhcHHHHhh----hhhee
Confidence 3346777777777778887776532 22111111 2346789999998652 2233333332 27899
Q ss_pred EeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEEEEecCCceEEEeCCce
Q 016868 222 YDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFS 301 (381)
Q Consensus 222 ~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~ 301 (381)
+|++.....|.. ....+.++++++|++++|++|++.+ .+.+++++.+.++|++.|+||+|++|++++++++.
T Consensus 133 ~D~~~~~~~~~~---~~~~~~~~l~~~di~~~n~~E~~~~-----~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~ 204 (254)
T cd01937 133 LDAQGFLRRANQ---EKLIKCVILKLHDVLKLSRVEAEVI-----STPTELARLIKETGVKEIIVTDGEEGGYIFDGNGK 204 (254)
T ss_pred Eccccceeeccc---cchHHHhhcccCcEEEEcHHHHhhc-----CCHHHHHHHHHHcCCCEEEEeeCCcceEEEECCcc
Confidence 999754222322 1223567899999999999999983 23467778888899999999999999999998888
Q ss_pred EEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhh
Q 016868 302 GRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVM 358 (381)
Q Consensus 302 ~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~ 358 (381)
+++++++++++||+||||+|+|+|++++.+|++ +++|+++|+++|+++++
T Consensus 205 ~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~-------~~~a~~~a~~~aa~~i~ 254 (254)
T cd01937 205 YTIPASKKDVVDPTGAGDVFLAAFLYSRLSGKD-------IKEAAEFAAAAAAKFIE 254 (254)
T ss_pred EEccccCceeccCCCchHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999 99999999999999874
No 45
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=1e-36 Score=280.62 Aligned_cols=273 Identities=19% Similarity=0.260 Sum_probs=208.8
Q ss_pred cEEEEccceeecccCCCCCCccCCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeee
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLAESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRF 141 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~ 141 (381)
.|+|+|++++|++..... .....+||++.|+|.++++|| ++.++|.+|+| +|+++++.|+++||+++++.+
T Consensus 1 ~v~~~G~~~~D~~~~~~~-------~~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~l~~~gi~~~~v~~ 71 (277)
T cd01946 1 SLLVVGSVAFDAIETPFG-------KVDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKLLNSHNIVTLGLLS 71 (277)
T ss_pred CeEEEEEeeeeeecCCCc-------eeeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHHHHhccCcceeEEE
Confidence 389999999999943211 235679999999999999998 69999999999 899999999999999999988
Q ss_pred cCCCCceEEEEEe--cCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCe
Q 016868 142 DPGARTALAFVTL--RSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVV 219 (381)
Q Consensus 142 ~~~~~t~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~ 219 (381)
.++.+|....... +.+++++.... ......+.+ .+ .+.+++++++|++++. .+...++++.+++. .+
T Consensus 72 ~~~~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~-~~~~~~~~~v~~~~~~------~~~~~~~~~~~~~~-~~ 140 (277)
T cd01946 72 KEDGKTFHWAGRYHYDLNEADTLDTD--LNVFADFDP-QL-PEHYKDSEFVFLGNIA------PELQREVLEQVKDP-KL 140 (277)
T ss_pred ecCCCeEEEeeEehhhcccccchhhh--hhHHhhcCC-CC-hHHhhcCCEEEECCCC------HHHHHHHHHHHHhC-CE
Confidence 7766663221110 01222222111 111111222 12 2457889999987642 35566778888876 88
Q ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEEEEecCCceEEEeCC
Q 016868 220 LSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKD 299 (381)
Q Consensus 220 v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 299 (381)
+++|+. .+|.. ...+.+.++++++|++++|++|++.+++.. +..++++.+.+.|++.||+|+|.+|++++.++
T Consensus 141 v~~D~~---~~~~~--~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~--~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~ 213 (277)
T cd01946 141 VVMDTM---NFWIS--IKPEKLKKVLAKVDVVIINDGEARQLTGAA--NLVKAARLILAMGPKALIIKRGEYGALLFTDD 213 (277)
T ss_pred EEEccH---HHhhh--hhHHHHHHHhccCCEEeCCHHHHHHHhCCc--hHHHHHHHHHHcCCCEEEEecCCCcEEEEECC
Confidence 999983 23431 235567788999999999999999999854 33567788889999999999999999999988
Q ss_pred ceEEEcccccc-ccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCC
Q 016868 300 FSGRVQGLKVE-AVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAI 363 (381)
Q Consensus 300 ~~~~~~~~~v~-vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~ 363 (381)
+.+++|+++++ ++|||||||+|.|||+++|+++++ ..++++++|+++|+++|++++++.|+.
T Consensus 214 ~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~~~~~--~~~~~~~~a~~~a~~~aa~~~~~~G~~ 276 (277)
T cd01946 214 GYFAAPAYPLESVFDPTGAGDTFAGGFIGYLASQKD--TSEANMRRAIIYGSAMASFCVEDFGTK 276 (277)
T ss_pred ceEEcCCcccCccCCCCCchHHHHHHHHHHHHhCCC--cchhhHHHHHHHhHHHHhhhhhhcCCC
Confidence 88889998885 899999999999999999998853 123459999999999999999999964
No 46
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-32 Score=241.88 Aligned_cols=285 Identities=25% Similarity=0.305 Sum_probs=227.9
Q ss_pred cEEEEccceeecccCCCCCCcc------------------------CCCCccccCCChHHHHHHHHHHcCC---ceEEEe
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLA------------------------ESPAFKKAPGGAPANVAVGIARLGG---SSAFIG 114 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~------------------------~~~~~~~~~GG~~~NvA~~la~LG~---~v~li~ 114 (381)
-.+.+|++++|+...++...+. +....+..+||+..|.++.+++++. .+.++|
T Consensus 8 il~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~G 87 (343)
T KOG2854|consen 8 ILVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFFG 87 (343)
T ss_pred eeeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEEe
Confidence 4667899999999777633211 1335678999999999999999987 899999
Q ss_pred ecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccc----hhhcCCccEE
Q 016868 115 KVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELD----LSLITKAKIF 190 (381)
Q Consensus 115 ~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~----~~~i~~~~~~ 190 (381)
.||.|.+|+++.+.+++.||++.+. +.++.+|++|.++++.++ |+.+.+ .++...++.++++ +..++++.++
T Consensus 88 svG~Dk~ge~l~~~~~~aGv~~~yq-~~~d~~TGtCavli~~~n-RSL~an--LgAAn~f~~dhl~~~~~~~lveka~v~ 163 (343)
T KOG2854|consen 88 SVGKDKFGELLKSKARAAGVNVHYQ-VKEDGPTGTCAVLITGDN-RSLCAN--LGAANCFKVDHLDKEENWALVEKAKVF 163 (343)
T ss_pred eccCchHHHHHHHHHHhcCceEEEE-eccCCCCceEEEEEeCCC-cchhhc--cchhhccCHHHhcchhhhhhhhheeEE
Confidence 9999999999999999999999865 556779999999998877 776654 5666677777774 3578999999
Q ss_pred EEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCC---CC
Q 016868 191 HYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGE---DP 267 (381)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~---~~ 267 (381)
+++++.+ ...++.+..+.+.+.+.+.+.+++...+. -.+...+.+..+++++|+++.|++|++.+.... ..
T Consensus 164 yv~Gffl--tv~p~ai~~v~qh~~e~~r~~~lnlsapf----I~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~ 237 (343)
T KOG2854|consen 164 YVAGFFL--TVSPDAIRKVAQHAAENNRVFTLNLSAPF----ISQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETK 237 (343)
T ss_pred EEEEEEE--EeChHHHHHHHHHHHHhcchhheeccchh----HHHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCccc
Confidence 9999865 34457888888888888876666653211 135677888899999999999999999987544 22
Q ss_pred ChHHHHHHHH------hcCCCEEEEEecCCceEEEeCCceEEEccccc---cccCCCCccHHHHHHHHHHHHcCCccccc
Q 016868 268 YDDAVVYKLF------HANLKLLLVTEGPDGCRYYTKDFSGRVQGLKV---EAVDATGAGDAFVAGILSQLSTDFSLLQK 338 (381)
Q Consensus 268 ~~~~~~~~l~------~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v---~vvdttGAGDaF~ag~l~~l~~g~~~~~~ 338 (381)
+..+....+. ....++++||.|.+++++..++....+|..++ +++||+||||+|.+||+++|.+|++
T Consensus 238 dv~eia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~qg~~---- 313 (343)
T KOG2854|consen 238 DVKEIALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQGKS---- 313 (343)
T ss_pred chHHHhhHhhccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHHHHcCCC----
Confidence 2222222221 13467899999999999999887666666554 5999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCC
Q 016868 339 EDQLRDALRFANACGALTVMERGAI 363 (381)
Q Consensus 339 ~~~l~~al~~A~~~Aa~~~~~~G~~ 363 (381)
+++|++.|+.+|+..+...|..
T Consensus 314 ---l~~cir~g~~aa~~vi~~~G~~ 335 (343)
T KOG2854|consen 314 ---LEECIRAGSYAASHVIRRVGCT 335 (343)
T ss_pred ---HHHHHHHHHHHhhheeeccCCC
Confidence 9999999999999999999975
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=1e-30 Score=236.85 Aligned_cols=288 Identities=23% Similarity=0.233 Sum_probs=225.0
Q ss_pred CCCcEEEEccceeecccCCCCC--Ccc------CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHH
Q 016868 59 ESPLVVCFGEMLIDFVPTVSGL--SLA------ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILK 130 (381)
Q Consensus 59 ~~~~vlviG~~~iD~~~~~~~~--~~~------~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~ 130 (381)
.+.+|+|+|.+++|.+....-. .++ .......++||. .|||.+++.||.++.++|.+|.|..|+.+.+.|.
T Consensus 9 ~~~kVLVvGDvmLDrY~~G~~~RISPEAPVPVv~v~~e~~rlGGA-aNVa~NiasLGa~a~l~GvvG~Deag~~L~~~l~ 87 (467)
T COG2870 9 KQAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEKEEERLGGA-ANVAKNIASLGANAYLVGVVGKDEAGKALIELLK 87 (467)
T ss_pred cCCcEEEEcceeeeeeccccccccCCCCCCceEEecccccccccH-HHHHHHHHHcCCCEEEEEeeccchhHHHHHHHHH
Confidence 3468999999999998664322 111 344567889998 9999999999999999999999999999999999
Q ss_pred HCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccc---hhhcCCccEEEEccccccCchhHHHHH
Q 016868 131 ENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELD---LSLITKAKIFHYGSISLITEPCKSAHI 207 (381)
Q Consensus 131 ~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~~~ 207 (381)
..+|+.. +..+++.+|.+...++..+.+..-+.+...... .....+- ...+.+.+.++++.|.-..- ....
T Consensus 88 ~~~i~~~-l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~--~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L---~~~q 161 (467)
T COG2870 88 ANGIDSD-LLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPI--EDENKLLEKIKNALKSFDALVLSDYAKGVL---TNVQ 161 (467)
T ss_pred hcCcccc-eEeecCCCceeeeeeecccceEEEecccccCcc--hhHHHHHHHHHHHhhcCCEEEEeccccccc---hhHH
Confidence 9999955 556778899988888765554332222111111 1111111 25678899999988743211 1156
Q ss_pred HHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChH--HHHHHHH-hcCCCEE
Q 016868 208 AAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDD--AVVYKLF-HANLKLL 284 (381)
Q Consensus 208 ~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~--~~~~~l~-~~g~~~v 284 (381)
.+++.||+.|++|.+||..... +.+..+.+++||..|++...|....+.+ +..+.|. +.+...+
T Consensus 162 ~~I~~ar~~~~pVLvDPKg~Df-------------~~Y~GAtLiTPN~~E~~~~vg~~~~e~el~~~g~kL~~~~~L~al 228 (467)
T COG2870 162 KMIDLAREAGIPVLVDPKGKDF-------------EKYRGATLITPNLKEFEEAVGKCKSEEELEERGQKLKEELDLSAL 228 (467)
T ss_pred HHHHHHHHcCCcEEECCCCcch-------------hhhCCCeecCCCHHHHHHHHcccccHHHHHHHHHHHHHhhCcceE
Confidence 7889999999999999964221 3356899999999999999998766421 2223444 5788999
Q ss_pred EEEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCC
Q 016868 285 LVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERGAIP 364 (381)
Q Consensus 285 vvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~ 364 (381)
+||++++|+.++..++..|+|+...++-|.|||||+-.|.|..+++.|.+ +++|+.+||++|+..+...|+.
T Consensus 229 LvTRsE~GMtL~~~~~~~h~pt~AkEVyDVTGAGDTVIa~la~~laaG~s-------~~eAc~lAN~AagiVVgKlGTa- 300 (467)
T COG2870 229 LVTRSEKGMTLFQEGKPLHFPARAKEVYDVTGAGDTVIAVLAAALAAGAS-------LEEACELANAAAGIVVGKLGTA- 300 (467)
T ss_pred EEEeccCCceeecCCcccccchhheeeeeccCCCchHHHHHHHHHHcCCC-------HHHHHHHhhhhcceEEeeccce-
Confidence 99999999999999888999999889999999999999999999999999 9999999999999999999985
Q ss_pred CCCCHHHHHHH
Q 016868 365 ALPTREAVLNA 375 (381)
Q Consensus 365 ~~~~~~~v~~~ 375 (381)
..+.+|+...
T Consensus 301 -tvs~~EL~nA 310 (467)
T COG2870 301 -TVSPEELEMA 310 (467)
T ss_pred -eecHHHHHhh
Confidence 4788888763
No 48
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.97 E-value=8.1e-29 Score=216.13 Aligned_cols=188 Identities=31% Similarity=0.407 Sum_probs=157.9
Q ss_pred cEEEEccceeecccCCCCCCcc----CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCC
Q 016868 62 LVVCFGEMLIDFVPTVSGLSLA----ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGA 137 (381)
Q Consensus 62 ~vlviG~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~ 137 (381)
+|+++|++++|.+..++..|.. +.......+||++.|+|.+|++||.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------------------- 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVDALPLPGGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------------------- 57 (196)
T ss_pred CEEEEccceEEEEEEeccCCCCCCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE-----------------------
Confidence 4899999999999988876664 2456788999999999999999999999999
Q ss_pred CeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCC
Q 016868 138 GMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAG 217 (381)
Q Consensus 138 ~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g 217 (381)
+|++|+++.... .+...++++.+++.+
T Consensus 58 -------------------------------------------------~~~v~i~~~~~~----~~~~~~~~~~~~~~~ 84 (196)
T cd00287 58 -------------------------------------------------ADAVVISGLSPA----PEAVLDALEEARRRG 84 (196)
T ss_pred -------------------------------------------------ccEEEEecccCc----HHHHHHHHHHHHHcC
Confidence 678888875322 356778889999999
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCCh---HHHHHHHHhcCCCEEEEEecCCceE
Q 016868 218 VVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYD---DAVVYKLFHANLKLLLVTEGPDGCR 294 (381)
Q Consensus 218 ~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~---~~~~~~l~~~g~~~vvvt~G~~G~~ 294 (381)
+++++|++.....|.. ..+.++++++|++++|++|++.+++....+. .++++.+.+.+++.|++|+|++|++
T Consensus 85 ~~v~~D~~~~~~~~~~-----~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~ 159 (196)
T cd00287 85 VPVVLDPGPRAVRLDG-----EELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALLLSKGPKVVIVTLGEKGAI 159 (196)
T ss_pred CeEEEeCCcccccccc-----chHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHHHhcCCCEEEEEECCCccE
Confidence 9999999876554432 1256788999999999999999998765542 2456778889999999999999999
Q ss_pred EEe-CCceEEEccccccccCCCCccHHHHHHHHHHHH
Q 016868 295 YYT-KDFSGRVQGLKVEAVDATGAGDAFVAGILSQLS 330 (381)
Q Consensus 295 ~~~-~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~ 330 (381)
+++ +++.+++|+++++++||+||||+|+|||+++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 160 VATRGGTEVHVPAFPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred EEecCCceEEcCCccCCcccCCCchHHHHHHHHHHhC
Confidence 998 777888998888999999999999999999874
No 49
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.3e-28 Score=206.84 Aligned_cols=276 Identities=18% Similarity=0.279 Sum_probs=210.4
Q ss_pred CCcEEEEccceeecccCCCCCCccC----CCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCC
Q 016868 60 SPLVVCFGEMLIDFVPTVSGLSLAE----SPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVN 135 (381)
Q Consensus 60 ~~~vlviG~~~iD~~~~~~~~~~~~----~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~ 135 (381)
+..|+|+|.+.+|++..++..|.+. ..+-.++-||.+.|++.+|..||.++.|+|.+.....-+++++.|++.|||
T Consensus 4 ~k~VLcVG~~~lD~iTivd~~~fe~~~~r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~lLddl~~rgId 83 (308)
T KOG2947|consen 4 PKQVLCVGCTVLDVITIVDKYPFEDSEIRCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFLLDDLRRRGID 83 (308)
T ss_pred cceEEEeccEEEEEEEeccCCCCCccceehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHHHHHHHHhcCCC
Confidence 3579999999999998777766552 334578899999999999999999999999999888899999999999999
Q ss_pred CCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHH
Q 016868 136 GAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKD 215 (381)
Q Consensus 136 ~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 215 (381)
++++......+.-..+++....|.|+++++ .......+.+++..-.+.+..|+|+.... +.+. .++++...+
T Consensus 84 ishcpftd~~pp~ssiI~~r~s~trTil~~--dks~p~vT~~dF~kvdl~qy~WihfE~Rn-----p~et-lkM~~~I~~ 155 (308)
T KOG2947|consen 84 ISHCPFTDHSPPFSSIIINRNSGTRTILYC--DKSLPDVTATDFEKVDLTQYGWIHFEARN-----PSET-LKMLQRIDA 155 (308)
T ss_pred cccCccccCCCCcceEEEecCCCceEEEEe--cCCCccccHHHhhhcccceeeeEEEecCC-----hHHH-HHHHHHHHH
Confidence 999988766444444444445678888876 34555677777765568899999998642 2222 233333322
Q ss_pred --------CCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHh---cC--CC
Q 016868 216 --------AGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFH---AN--LK 282 (381)
Q Consensus 216 --------~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~---~g--~~ 282 (381)
.++.+++|.. ..++....+...+|+++.+++=++.+. -. +..++.+.++. +| ..
T Consensus 156 ~N~r~pe~qrI~vSvd~e----------n~req~~~l~am~DyVf~sK~~a~~~g-fk--s~rea~~~l~~r~~~~~pkp 222 (308)
T KOG2947|consen 156 HNTRQPEEQRIRVSVDVE----------NPREQLFQLFAMCDYVFVSKDVAKHLG-FK--SPREACEGLYGRVPKGKPKP 222 (308)
T ss_pred hhcCCCccceEEEEEEec----------CcHHHHHHHhhcccEEEEEHHHHhhhc-cC--CHHHHHHHHHhhcccCCCCc
Confidence 4567888873 235566678899999999999887763 22 23566655543 22 24
Q ss_pred EEEEEecCCceEEEeCC-ceEEEccccc-cccCCCCccHHHHHHHHHHH-HcCCccccchHHHHHHHHHHHHHHHHHhhh
Q 016868 283 LLLVTEGPDGCRYYTKD-FSGRVQGLKV-EAVDATGAGDAFVAGILSQL-STDFSLLQKEDQLRDALRFANACGALTVME 359 (381)
Q Consensus 283 ~vvvt~G~~G~~~~~~~-~~~~~~~~~v-~vvdttGAGDaF~ag~l~~l-~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~ 359 (381)
.+|+-++++|+-....+ +.+++++.+- ++||+.|+||+|.|||||++ .++.+ +.||++||+++|+.++..
T Consensus 223 v~I~~w~~eGA~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~r~-------l~eAvdfg~rvas~Kl~g 295 (308)
T KOG2947|consen 223 VLICPWASEGAGALGADGKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQGRS-------LAEAVDFGNRVASKKLGG 295 (308)
T ss_pred EEEeccccccccccCCCCCEEecCCCCCccceeeccCCCcchHHHHHHHHHhhhh-------HHHHHHHHHHhhhccccc
Confidence 67888999998766554 6778888764 79999999999999999995 56777 999999999999999998
Q ss_pred cCCC
Q 016868 360 RGAI 363 (381)
Q Consensus 360 ~G~~ 363 (381)
.|..
T Consensus 296 ~Gfd 299 (308)
T KOG2947|consen 296 QGFD 299 (308)
T ss_pred cccc
Confidence 8753
No 50
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.83 E-value=2.3e-19 Score=162.90 Aligned_cols=226 Identities=16% Similarity=0.146 Sum_probs=148.5
Q ss_pred eEEEeecCCChHHH-HHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCcc
Q 016868 110 SAFIGKVGADEFGY-MLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAK 188 (381)
Q Consensus 110 v~li~~vG~D~~g~-~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~ 188 (381)
..+++.-|.|+.|- =+..+++-..- ....+..+.+++...+..|. .+.. . ..+.+ .+++. .+...+
T Consensus 4 ~~vl~iag~d~~ggaG~~aD~~~~~~-----~~~~~~~~~t~~t~~~~~G~-~v~~---~-~~~~l-~~~l~--~l~~~~ 70 (253)
T PRK12413 4 NYILAISGNDIFSGGGLHADLATYTR-----NGLHGFVAVTCLTAMTEKGF-EVFP---V-DKEIF-QQQLD--SLKDVP 70 (253)
T ss_pred CeEEEEeeeCCCCHHHHHHHHHHHHH-----cCCccCeeeEEEecccCCce-EEEE---C-CHHHH-HHHHH--HhhCCC
Confidence 34566677775543 25555543211 11224455666666677774 2221 1 11111 11221 122333
Q ss_pred E--EEEccccccCchhHHHHHHHHHHHH-HCCCeEEEeCCCCCCCCC--CHHHHHHHHHHHhhhCCEEecCHHHHhhccC
Q 016868 189 I--FHYGSISLITEPCKSAHIAAAKAAK-DAGVVLSYDPNLRLPLWP--SADKAREGILSIWETADIIKISEEEISFLTQ 263 (381)
Q Consensus 189 ~--~~~~~~~~~~~~~~~~~~~~l~~a~-~~g~~v~~D~~~~~~~~~--~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~ 263 (381)
+ +.++.+ . + .+....+++.++ ..++++++||+.+...|. ..+...+.+.++++++|+++||++|++.|+|
T Consensus 71 ~~~i~~G~l-~-~---~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g 145 (253)
T PRK12413 71 FSAIKIGLL-P-N---VEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSG 145 (253)
T ss_pred CCEEEECCc-C-C---HHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhC
Confidence 3 333332 1 2 233444444444 468899999999988883 3455666777789999999999999999999
Q ss_pred CCCCCh---HHHHHHHHhcCCCEEEEEecCCce-----EEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCcc
Q 016868 264 GEDPYD---DAVVYKLFHANLKLLLVTEGPDGC-----RYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSL 335 (381)
Q Consensus 264 ~~~~~~---~~~~~~l~~~g~~~vvvt~G~~G~-----~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~ 335 (381)
....+. .++++.+.+.|++.|+||.|++|. .++..++..+.+.+++..+|++||||+|+|+|++++.+|++
T Consensus 146 ~~~~~~~~~~~~a~~l~~~g~~~Vvvt~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGDaf~a~~~~~l~~g~~- 224 (253)
T PRK12413 146 KEIKTLEDMKEAAKKLYDLGAKAVVIKGGNRLSQKKAIDLFYDGKEFVILESPVLEKNNIGAGCTFASSIASQLVKGKS- 224 (253)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCcceEEEEcCCEEEEEeecccCCCCCChHHHHHHHHHHHHHcCCC-
Confidence 765443 356678888999999999998642 23333444556666777899999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHhhhc
Q 016868 336 LQKEDQLRDALRFANACGALTVMER 360 (381)
Q Consensus 336 ~~~~~~l~~al~~A~~~Aa~~~~~~ 360 (381)
+++|+++|.++....+++-
T Consensus 225 ------l~ea~~~A~~~~~~~l~~~ 243 (253)
T PRK12413 225 ------PLEAVKNSKDFVYQAIQQS 243 (253)
T ss_pred ------HHHHHHHHHHHHHHHHHHH
Confidence 9999999999888777653
No 51
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.83 E-value=2.2e-19 Score=163.11 Aligned_cols=166 Identities=22% Similarity=0.108 Sum_probs=130.4
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHHHC--CCeEEEeCCCC--CCCCCCHHHHHHHHHHHhh-hCCEEecCHHHHh
Q 016868 185 TKAKIFHYGSISLITEPCKSAHIAAAKAAKDA--GVVLSYDPNLR--LPLWPSADKAREGILSIWE-TADIIKISEEEIS 259 (381)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~--g~~v~~D~~~~--~~~~~~~~~~~~~~~~~l~-~~dvl~~N~~E~~ 259 (381)
...+.+..+. +.+....+.+.++++.++++ ++++++||+.. ..+|...+...+.+.+++. ++|++++|..|++
T Consensus 71 ~~~~~v~~G~--l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~ 148 (254)
T cd01173 71 LEYDAVLTGY--LGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELE 148 (254)
T ss_pred ccCCEEEEec--CCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHH
Confidence 4567775443 33456678888999999887 89999999753 2455333456667777776 9999999999999
Q ss_pred hccCCCCCCh---HHHHHHHHhcCCCEEEEEecCC------ceEEEeCCceEEEcccccc-ccCCCCccHHHHHHHHHHH
Q 016868 260 FLTQGEDPYD---DAVVYKLFHANLKLLLVTEGPD------GCRYYTKDFSGRVQGLKVE-AVDATGAGDAFVAGILSQL 329 (381)
Q Consensus 260 ~l~~~~~~~~---~~~~~~l~~~g~~~vvvt~G~~------G~~~~~~~~~~~~~~~~v~-vvdttGAGDaF~ag~l~~l 329 (381)
.|+|....+. .++++.+.+.|++.|+||.|.. |++++++++.++++.+.++ ++|++|+||+|+|+|++++
T Consensus 149 ~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~~~~~l 228 (254)
T cd01173 149 LLTGKKINDLEDAKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKIPFPAYFNGTGDLFAALLLARL 228 (254)
T ss_pred HHcCCCcCCHHHHHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEeeccCCCCCcCChHHHHHHHHHHHH
Confidence 9999865432 4566788889999999999985 7888877665556665566 7999999999999999999
Q ss_pred HcCCccccchHHHHHHHHHHHHHHHHHhhh
Q 016868 330 STDFSLLQKEDQLRDALRFANACGALTVME 359 (381)
Q Consensus 330 ~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~ 359 (381)
++|++ +++|+++|++.....+..
T Consensus 229 ~~g~~-------~~~a~~~A~~~~~~~i~~ 251 (254)
T cd01173 229 LKGKS-------LAEALEKALNFVHEVLEA 251 (254)
T ss_pred HcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 99999 999999999988776643
No 52
>PRK05756 pyridoxamine kinase; Validated
Probab=99.82 E-value=6.3e-19 Score=162.79 Aligned_cols=167 Identities=22% Similarity=0.128 Sum_probs=130.5
Q ss_pred cCCccEEEEccccccCchhHHHHHHHHHHHHHCC--CeEEEeCCCCCC---CCCCHHHHHHHHHHHhhhCCEEecCHHHH
Q 016868 184 ITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAG--VVLSYDPNLRLP---LWPSADKAREGILSIWETADIIKISEEEI 258 (381)
Q Consensus 184 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g--~~v~~D~~~~~~---~~~~~~~~~~~~~~~l~~~dvl~~N~~E~ 258 (381)
+...+++..+. +.+....+.+.++++.+++.+ +.+++||..+.. .|...+........+++++|+++||..|+
T Consensus 72 l~~~~~v~~G~--l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea 149 (286)
T PRK05756 72 LGECDAVLSGY--LGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFEL 149 (286)
T ss_pred cccCCEEEECC--CCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHH
Confidence 44678665443 335556778888888888765 568899986652 44343334444456899999999999999
Q ss_pred hhccCCCCCChH---HHHHHHHhcCCCEEEEEecCC--------ceEEEeCCceEEEccccccc-cCCCCccHHHHHHHH
Q 016868 259 SFLTQGEDPYDD---AVVYKLFHANLKLLLVTEGPD--------GCRYYTKDFSGRVQGLKVEA-VDATGAGDAFVAGIL 326 (381)
Q Consensus 259 ~~l~~~~~~~~~---~~~~~l~~~g~~~vvvt~G~~--------G~~~~~~~~~~~~~~~~v~v-vdttGAGDaF~ag~l 326 (381)
+.|++....+.+ ++++.+++.|++.|+||.|.. |++++++++.++++.++++. +|++||||+|+|+|+
T Consensus 150 ~~L~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~GaGD~f~a~~~ 229 (286)
T PRK05756 150 EWLSGRPVETLEDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLVDFMRQPVGVGDLTSALFL 229 (286)
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEecCccCCCCCCCChHHHHHHHHH
Confidence 999997654433 455678889999999999876 47777777777777777777 799999999999999
Q ss_pred HHHHcCCccccchHHHHHHHHHHHHHHHHHhhh
Q 016868 327 SQLSTDFSLLQKEDQLRDALRFANACGALTVME 359 (381)
Q Consensus 327 ~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~ 359 (381)
+++++|++ +++|+++|++.....+..
T Consensus 230 a~l~~g~~-------~~~al~~A~~~~~~~i~~ 255 (286)
T PRK05756 230 ARLLQGGS-------LEEALEHTTAAVYEVMAR 255 (286)
T ss_pred HHHhcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999887764
No 53
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.80 E-value=1.9e-18 Score=159.69 Aligned_cols=161 Identities=20% Similarity=0.169 Sum_probs=122.8
Q ss_pred cCCccEEEEccccccCchhHHHHHHHHHHHHHCC--CeEEEeCCCCCC---CCCCHHHHHHHH-HHHhhhCCEEecCHHH
Q 016868 184 ITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAG--VVLSYDPNLRLP---LWPSADKAREGI-LSIWETADIIKISEEE 257 (381)
Q Consensus 184 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g--~~v~~D~~~~~~---~~~~~~~~~~~~-~~~l~~~dvl~~N~~E 257 (381)
+.++|+++.+. +.+....+.+.++++.+++.+ +.+++||..+.. .|... ...+.+ ..+++++|++++|..|
T Consensus 72 ~~~~d~v~~G~--l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~-~~~~~~~~~ll~~adii~pN~~E 148 (286)
T TIGR00687 72 LNQCDAVLSGY--LGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAP-DLLEVYREKAIPVADIITPNQFE 148 (286)
T ss_pred cccCCEEEECC--CCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeCh-hHHHHHHHhccccccEecCCHHH
Confidence 45788875554 334556678888898888765 678899965432 23222 344444 4588999999999999
Q ss_pred HhhccCCCCCChH---HHHHHHHhcCCCEEEEE-ecCCce--------EEEeCCceEEEcccccc-ccCCCCccHHHHHH
Q 016868 258 ISFLTQGEDPYDD---AVVYKLFHANLKLLLVT-EGPDGC--------RYYTKDFSGRVQGLKVE-AVDATGAGDAFVAG 324 (381)
Q Consensus 258 ~~~l~~~~~~~~~---~~~~~l~~~g~~~vvvt-~G~~G~--------~~~~~~~~~~~~~~~v~-vvdttGAGDaF~ag 324 (381)
++.|+|.+..+.+ ++++.+++.|++.|+|| .|.+|+ +++++++.++++.++++ ++|++||||+|+|+
T Consensus 149 a~~L~g~~~~~~~~~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~A~ 228 (286)
T TIGR00687 149 LELLTGRKINTVEEALAAADALIAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQPVGTGDLIAAL 228 (286)
T ss_pred HHHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCcCCCCCCCChHHHHHHH
Confidence 9999997654433 45677888999999999 688775 44555666677777777 69999999999999
Q ss_pred HHHHHHcCCccccchHHHHHHHHHHHHHHH
Q 016868 325 ILSQLSTDFSLLQKEDQLRDALRFANACGA 354 (381)
Q Consensus 325 ~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa 354 (381)
|++++++|++ +++|+++|+++..
T Consensus 229 ~l~~l~~g~~-------~~~al~~A~~~v~ 251 (286)
T TIGR00687 229 LLATLLHGNS-------LKEALEKTVSAVY 251 (286)
T ss_pred HHHHHhcCCC-------HHHHHHHHHHHHH
Confidence 9999999999 9999999999933
No 54
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.80 E-value=4.5e-18 Score=155.40 Aligned_cols=165 Identities=13% Similarity=0.087 Sum_probs=125.7
Q ss_pred hcCC--ccEEEEccccccCchhHHHHHHHHHHHHHCCCe-EEEeCCCCCCCC---CCHHHHHHHHHHHhhhCCEEecCHH
Q 016868 183 LITK--AKIFHYGSISLITEPCKSAHIAAAKAAKDAGVV-LSYDPNLRLPLW---PSADKAREGILSIWETADIIKISEE 256 (381)
Q Consensus 183 ~i~~--~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~-v~~D~~~~~~~~---~~~~~~~~~~~~~l~~~dvl~~N~~ 256 (381)
.+++ .+.+.++.+. +.+....+.+.+++.+.+ +++||....... ...+........+++++|+++||+.
T Consensus 67 l~~d~~~~~ikiG~l~-----~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~ 141 (268)
T PRK12412 67 TIEGVGVDALKTGMLG-----SVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLF 141 (268)
T ss_pred HHhCCCCCEEEECCCC-----CHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHH
Confidence 4444 6788776431 335666777777887776 999997533211 1122223344568899999999999
Q ss_pred HHhhccCCCCCCh---HHHHHHHHhcCCCEEEEEecCCce------EEEeCCceEEEccccccccCCCCccHHHHHHHHH
Q 016868 257 EISFLTQGEDPYD---DAVVYKLFHANLKLLLVTEGPDGC------RYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILS 327 (381)
Q Consensus 257 E~~~l~~~~~~~~---~~~~~~l~~~g~~~vvvt~G~~G~------~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~ 327 (381)
|++.|+|....+. .++++.+.+.|++.|+||.|++|+ +++.+++.++++.++++.+|++|+||+|+|+|++
T Consensus 142 Ea~~L~g~~~~~~~~~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD~f~aa~aa 221 (268)
T PRK12412 142 EAYQLSGVKINSLEDMKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAAITA 221 (268)
T ss_pred HHHHHhCcCCCCHHHHHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHHHHHHHHHH
Confidence 9999999764432 456678888999999999998763 4455555567888889999999999999999999
Q ss_pred HHHcCCccccchHHHHHHHHHHHHHHHHHhhh
Q 016868 328 QLSTDFSLLQKEDQLRDALRFANACGALTVME 359 (381)
Q Consensus 328 ~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~ 359 (381)
+|++|++ +++|+++|.++....+.+
T Consensus 222 ~l~~g~~-------l~eA~~~A~~~~~~~i~~ 246 (268)
T PRK12412 222 ELAKGKP-------VKEAVKTAKEFITAAIRY 246 (268)
T ss_pred HHHCCCC-------HHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999887765
No 55
>PRK07105 pyridoxamine kinase; Validated
Probab=99.80 E-value=1.5e-18 Score=160.19 Aligned_cols=165 Identities=20% Similarity=0.168 Sum_probs=125.6
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCC--CCCCC-HHHHHHHHHHHhhhCCEEecCHHHHhhcc
Q 016868 186 KAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRL--PLWPS-ADKAREGILSIWETADIIKISEEEISFLT 262 (381)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~--~~~~~-~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 262 (381)
.+|.++++.+ .+....+.+.++++.+++.++++++||+... .+|.. .+...+.+.++++++|+++||+.|++.|+
T Consensus 75 ~~~aik~G~l--~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~ 152 (284)
T PRK07105 75 KFDAIYSGYL--GSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLL 152 (284)
T ss_pred ccCEEEECcC--CCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHc
Confidence 5777877643 3444455666667666777899999998543 34532 23456667789999999999999999999
Q ss_pred CCCCC----Ch---HHHHHHHHhcCCCEEEEEe-----cCCceEEEeCC--ceEEEccccccccCCCCccHHHHHHHHHH
Q 016868 263 QGEDP----YD---DAVVYKLFHANLKLLLVTE-----GPDGCRYYTKD--FSGRVQGLKVEAVDATGAGDAFVAGILSQ 328 (381)
Q Consensus 263 ~~~~~----~~---~~~~~~l~~~g~~~vvvt~-----G~~G~~~~~~~--~~~~~~~~~v~vvdttGAGDaF~ag~l~~ 328 (381)
|.... +. .++++.+.+.|++.|+||. |..|+++++++ ..++++.+.++ +|++|+||+|+|+|+++
T Consensus 153 g~~~~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~aa~~~~ 231 (284)
T PRK07105 153 DKPYLEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKYIP-AHYPGTGDIFTSVITGS 231 (284)
T ss_pred CCCcCcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeecccC-CCcCChhHHHHHHHHHH
Confidence 97532 12 3456778889999999999 66788888653 34445554444 89999999999999999
Q ss_pred HHcCCccccchHHHHHHHHHHHHHHHHHhhhc
Q 016868 329 LSTDFSLLQKEDQLRDALRFANACGALTVMER 360 (381)
Q Consensus 329 l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~ 360 (381)
+++|++ +++|+++|.+++...+.+-
T Consensus 232 l~~g~~-------l~~av~~A~~~~~~~i~~~ 256 (284)
T PRK07105 232 LLQGDS-------LPIALDRAVQFIEKGIRAT 256 (284)
T ss_pred HhCCCC-------HHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999998888754
No 56
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.80 E-value=4.5e-18 Score=154.36 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=125.1
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHCCC-eEEEeCCCCC----CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhc
Q 016868 187 AKIFHYGSISLITEPCKSAHIAAAKAAKDAGV-VLSYDPNLRL----PLWPSADKAREGILSIWETADIIKISEEEISFL 261 (381)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~-~v~~D~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l 261 (381)
.+.+.++-+ . +.+.+..+++.+++++. ++++||.... .++ +.+........+++++|+++||..|++.|
T Consensus 68 ~~aikiG~l--~---~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~-~~~~~~~~~~~ll~~~dvitpN~~Ea~~L 141 (254)
T TIGR00097 68 VDAAKTGML--A---SAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLL-EEEAIEALRKRLLPLATLITPNLPEAEAL 141 (254)
T ss_pred CCEEEECCc--C---CHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCC-CHHHHHHHHHhccccccEecCCHHHHHHH
Confidence 466776632 1 23566777788888888 6999997543 222 22222333446789999999999999999
Q ss_pred cCCCCCCh---HHHHHHHHhcCCCEEEEEecC----Cce-EEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCC
Q 016868 262 TQGEDPYD---DAVVYKLFHANLKLLLVTEGP----DGC-RYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDF 333 (381)
Q Consensus 262 ~~~~~~~~---~~~~~~l~~~g~~~vvvt~G~----~G~-~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~ 333 (381)
++....+. .++++.+.+.|++.|+||.|. +|. +++++++.++++.++++++|++|+||+|.|+|++++++|+
T Consensus 142 ~g~~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~aalaa~la~g~ 221 (254)
T TIGR00097 142 LGTKIRTEQDMIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGCTLSAAIAANLAKGL 221 (254)
T ss_pred hCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHHHHHHHHHHHHHCCC
Confidence 98754432 356678888999999999997 344 6677777778888889999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhh
Q 016868 334 SLLQKEDQLRDALRFANACGALTVME 359 (381)
Q Consensus 334 ~~~~~~~~l~~al~~A~~~Aa~~~~~ 359 (381)
+ +++|+++|++++...+.+
T Consensus 222 ~-------l~eA~~~A~~~~~~~i~~ 240 (254)
T TIGR00097 222 S-------LKEAVKEAKEFVTGAIRY 240 (254)
T ss_pred C-------HHHHHHHHHHHHHHHHHH
Confidence 9 999999999999988875
No 57
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.79 E-value=9.4e-18 Score=151.34 Aligned_cols=161 Identities=18% Similarity=0.139 Sum_probs=123.4
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHC-CCeEEEeCCCCCCCCC---CHHHHHHHHHHHhhhCCEEecCHHHHhhc
Q 016868 186 KAKIFHYGSISLITEPCKSAHIAAAKAAKDA-GVVLSYDPNLRLPLWP---SADKAREGILSIWETADIIKISEEEISFL 261 (381)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~-g~~v~~D~~~~~~~~~---~~~~~~~~~~~~l~~~dvl~~N~~E~~~l 261 (381)
+++.+.++.+ . ..+....+.+.+++. +.++++||..+...+. +.+........+++++|+++||..|++.|
T Consensus 68 ~~~~i~~G~l--~---~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L 142 (242)
T cd01169 68 PVDAIKIGML--G---SAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELL 142 (242)
T ss_pred CCCEEEECCC--C---CHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHH
Confidence 5677777543 2 234555666666665 8899999986543221 22222334456779999999999999999
Q ss_pred cCCCCCCh---HHHHHHHHhcCCCEEEEEecCCc-----eEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCC
Q 016868 262 TQGEDPYD---DAVVYKLFHANLKLLLVTEGPDG-----CRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDF 333 (381)
Q Consensus 262 ~~~~~~~~---~~~~~~l~~~g~~~vvvt~G~~G-----~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~ 333 (381)
++....+. .++++.+.+.|++.|+||.|++| .+++++++.++++.++++++|++|+||+|+|+|++++++|.
T Consensus 143 ~g~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~a~l~~g~ 222 (242)
T cd01169 143 TGLEIATEEDMMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFESPRIDTKNTHGTGCTLSSAIAANLAKGL 222 (242)
T ss_pred hCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEECCcEEEEecceeCCCCCCChHHHHHHHHHHHHHCCC
Confidence 99765432 34567788899999999999885 36677777788898888899999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhh
Q 016868 334 SLLQKEDQLRDALRFANACGALTVM 358 (381)
Q Consensus 334 ~~~~~~~~l~~al~~A~~~Aa~~~~ 358 (381)
+ +++|+++|+..-...+.
T Consensus 223 ~-------~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 223 S-------LEEAVREAKEYVTQAIR 240 (242)
T ss_pred C-------HHHHHHHHHHHHHHHHH
Confidence 9 99999999998776654
No 58
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.79 E-value=7.6e-18 Score=154.08 Aligned_cols=161 Identities=20% Similarity=0.192 Sum_probs=124.5
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHCCC-eEEEeCCCCC----CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhh
Q 016868 186 KAKIFHYGSISLITEPCKSAHIAAAKAAKDAGV-VLSYDPNLRL----PLWPSADKAREGILSIWETADIIKISEEEISF 260 (381)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~-~v~~D~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~ 260 (381)
+.+.+.++.+ . ..+....+.+.+++.+. ++++||..+. .+| ..+......+++++++|+++||..|++.
T Consensus 73 ~~~ai~iG~l--~---~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~-~~~~~~~~~~~ll~~~dvitpN~~Ea~~ 146 (266)
T PRK06427 73 RIDAVKIGML--A---SAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLL-ADDAVAALRERLLPLATLITPNLPEAEA 146 (266)
T ss_pred CCCEEEECCc--C---CHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCC-CHHHHHHHHHhhhCcCeEEcCCHHHHHH
Confidence 4577777643 2 23455666777777775 7999997543 223 2222233334688999999999999999
Q ss_pred ccCCCCCC----hHHHHHHHHhcCCCEEEEEecC--Cce----EEEeCCceEEEccccccccCCCCccHHHHHHHHHHHH
Q 016868 261 LTQGEDPY----DDAVVYKLFHANLKLLLVTEGP--DGC----RYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLS 330 (381)
Q Consensus 261 l~~~~~~~----~~~~~~~l~~~g~~~vvvt~G~--~G~----~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~ 330 (381)
|+|....+ ..++++.+.+.|++.|+||.|+ +|. +++++++.++++.++++.+|++|+||+|+|+|+++++
T Consensus 147 L~g~~~~~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~~~l~ 226 (266)
T PRK06427 147 LTGLPIADTEDEMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRIPTKNTHGTGCTLSAAIAAELA 226 (266)
T ss_pred HhCCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeECCCCCCChHHHHHHHHHHHHH
Confidence 99975432 2456678888999999999998 554 6677666778888888899999999999999999999
Q ss_pred cCCccccchHHHHHHHHHHHHHHHHHhhh
Q 016868 331 TDFSLLQKEDQLRDALRFANACGALTVME 359 (381)
Q Consensus 331 ~g~~~~~~~~~l~~al~~A~~~Aa~~~~~ 359 (381)
+|++ +++|+++|++++...+.+
T Consensus 227 ~g~~-------l~~A~~~A~~~~~~~i~~ 248 (266)
T PRK06427 227 KGAS-------LLDAVQTAKDYVTRAIRH 248 (266)
T ss_pred CCCC-------HHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999988876
No 59
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.79 E-value=9.8e-18 Score=154.11 Aligned_cols=165 Identities=18% Similarity=0.127 Sum_probs=124.0
Q ss_pred cCCccEEEEccccccCchhHHHHHHHHHHHHH--CCCeEEEeCCCCC---CCCCCHHHHHHHH-HHHhhhCCEEecCHHH
Q 016868 184 ITKAKIFHYGSISLITEPCKSAHIAAAKAAKD--AGVVLSYDPNLRL---PLWPSADKAREGI-LSIWETADIIKISEEE 257 (381)
Q Consensus 184 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~--~g~~v~~D~~~~~---~~~~~~~~~~~~~-~~~l~~~dvl~~N~~E 257 (381)
+.++|.++++.+ .+....+.+.++++..+. .+.++++||.... .+|.+.+. .+.+ +.+++.+|+++||..|
T Consensus 86 l~~~d~i~~G~l--~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~-~~~~~~~Ll~~advitPN~~E 162 (281)
T PRK08176 86 LRQLRAVTTGYM--GSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDL-PEAYRQHLLPLAQGLTPNIFE 162 (281)
T ss_pred cccCCEEEECCC--CCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccH-HHHHHHHhHhhcCEeCCCHHH
Confidence 347888888753 344555666677766554 4788999997443 24533333 3344 4588999999999999
Q ss_pred HhhccCCCCCChH---HHHHHHHhcCCCEEEEEecCCc-------eEEEeCCceEEEccccccccCCCCccHHHHHHHHH
Q 016868 258 ISFLTQGEDPYDD---AVVYKLFHANLKLLLVTEGPDG-------CRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILS 327 (381)
Q Consensus 258 ~~~l~~~~~~~~~---~~~~~l~~~g~~~vvvt~G~~G-------~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~ 327 (381)
++.|+|....+.+ ++++++++.|++.|+||.|+.| ++++++++.+. ...+...+|++|+||+|+|+|++
T Consensus 163 a~~L~g~~~~~~~~~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~GaGD~faa~~~a 241 (281)
T PRK08176 163 LEILTGKPCRTLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTADSVNV-ISHPRVDTDLKGTGDLFCAELVS 241 (281)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCCceEE-EecCccCCCCCChhHHHHHHHHH
Confidence 9999997644433 4568888899999999999988 56677665443 33444567999999999999999
Q ss_pred HHHcCCccccchHHHHHHHHHHHHHHHHHhhh
Q 016868 328 QLSTDFSLLQKEDQLRDALRFANACGALTVME 359 (381)
Q Consensus 328 ~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~ 359 (381)
++++|.+ +++|+++|+..-...+..
T Consensus 242 ~l~~g~~-------l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 242 GLLKGKA-------LTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred HHhcCCC-------HHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999887766653
No 60
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.77 E-value=1.5e-17 Score=162.35 Aligned_cols=149 Identities=19% Similarity=0.200 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHHHHCCCeEEEeCCCCC----CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCCh---HHHHH
Q 016868 202 CKSAHIAAAKAAKDAGVVLSYDPNLRL----PLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYD---DAVVY 274 (381)
Q Consensus 202 ~~~~~~~~l~~a~~~g~~v~~D~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~---~~~~~ 274 (381)
+.+.+..+++.+++.++++++||+.+. .+|. .+........+++++|+++||..|++.|+|....+. .++++
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~-~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa~ 160 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLR-EDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAK 160 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 356778889999999999999997653 3443 222333446788999999999999999999764433 35567
Q ss_pred HHHh-cCCCEEEEEecC----Cce-EEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHH
Q 016868 275 KLFH-ANLKLLLVTEGP----DGC-RYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRF 348 (381)
Q Consensus 275 ~l~~-~g~~~vvvt~G~----~G~-~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~ 348 (381)
.|.+ .|++.|+||.|. +|+ +++.+++.++++.++++++|++||||+|+|+|++++++|++ +++|+++
T Consensus 161 ~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v~~~dt~GAGDaFsAa~aa~l~~G~~-------l~eAl~~ 233 (448)
T PRK08573 161 YIVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAPRVESGCTHGTGCSFSAAIAAGLAKGLD-------PEEAIKT 233 (448)
T ss_pred HHHHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEecCcCCCCCCChHHHHHHHHHHHHHcCCC-------HHHHHHH
Confidence 7764 899999999985 344 45566666788888899999999999999999999999999 9999999
Q ss_pred HHHHHHHHhh
Q 016868 349 ANACGALTVM 358 (381)
Q Consensus 349 A~~~Aa~~~~ 358 (381)
|+.+....++
T Consensus 234 A~~~~~~al~ 243 (448)
T PRK08573 234 AKKFITMAIK 243 (448)
T ss_pred HHHHHHHHHH
Confidence 9999999888
No 61
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.75 E-value=1.4e-16 Score=145.64 Aligned_cols=161 Identities=16% Similarity=0.110 Sum_probs=120.1
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHCC-CeEEEeCCCCCCC---CCCHHHHHHHHHHHhhhCCEEecCHHHHhhcc
Q 016868 187 AKIFHYGSISLITEPCKSAHIAAAKAAKDAG-VVLSYDPNLRLPL---WPSADKAREGILSIWETADIIKISEEEISFLT 262 (381)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g-~~v~~D~~~~~~~---~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 262 (381)
.+.+.++-+ .+ .+.+..+.+.+++.+ .++++||.....- ....+........+++.+|+++||..|++.|+
T Consensus 75 ~~aikiG~l--~s---~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~ 149 (270)
T PRK12616 75 VDAMKTGML--PT---VDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLS 149 (270)
T ss_pred CCEEEECCC--CC---HHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHc
Confidence 567766643 22 345556666667666 4699999764321 11122233333448889999999999999999
Q ss_pred CC-CCCCh---HHHHHHHHhcCCCEEEEEecCCce------EEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcC
Q 016868 263 QG-EDPYD---DAVVYKLFHANLKLLLVTEGPDGC------RYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTD 332 (381)
Q Consensus 263 ~~-~~~~~---~~~~~~l~~~g~~~vvvt~G~~G~------~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g 332 (381)
+. ...+. .++++.+.+.|++.|+||.|.+|. +++++++.++++.++++.+|++|+||+|+|+|+++|++|
T Consensus 150 g~~~~~~~~~~~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~fsaalaa~l~~g 229 (270)
T PRK12616 150 GMGEIKTVEQMKEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAVTAELAKG 229 (270)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEeeeeCCCCCCcHHHHHHHHHHHHHHCC
Confidence 86 33332 356678888999999999998762 556666667788888889999999999999999999999
Q ss_pred CccccchHHHHHHHHHHHHHHHHHhhh
Q 016868 333 FSLLQKEDQLRDALRFANACGALTVME 359 (381)
Q Consensus 333 ~~~~~~~~~l~~al~~A~~~Aa~~~~~ 359 (381)
.+ +++|+++|.......+..
T Consensus 230 ~~-------l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 230 SE-------VKEAIYAAKEFITAAIKE 249 (270)
T ss_pred CC-------HHHHHHHHHHHHHHHHHH
Confidence 99 999999999998877765
No 62
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.69 E-value=1.9e-15 Score=140.16 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=115.4
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHCC--CeEEEeCCC--CCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhc
Q 016868 186 KAKIFHYGSISLITEPCKSAHIAAAKAAKDAG--VVLSYDPNL--RLPLWPSADKAREGILSIWETADIIKISEEEISFL 261 (381)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g--~~v~~D~~~--~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l 261 (381)
+.+++..+.+. +....+.+.++++.+++.+ +++++||.. +..+|. .+...+.+.++++++|+++||++|++.|
T Consensus 77 ~~~~v~sG~l~--~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~-~~~~~~~~~~ll~~~dii~pN~~E~~~L 153 (296)
T PTZ00344 77 DYTYVLTGYIN--SADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYV-KEEVVDAYRELIPYADVITPNQFEASLL 153 (296)
T ss_pred cCCEEEECCCC--CHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEe-CHHHHHHHHHHhhhCCEEeCCHHHHHHH
Confidence 34555555432 3333445555666556555 589999854 455664 4567777888999999999999999999
Q ss_pred cCCCCCChH---HHHHHHHhcCCCEEEEE---ecCCc----eEEEeC------CceEEEccccccccCCCCccHHHHHHH
Q 016868 262 TQGEDPYDD---AVVYKLFHANLKLLLVT---EGPDG----CRYYTK------DFSGRVQGLKVEAVDATGAGDAFVAGI 325 (381)
Q Consensus 262 ~~~~~~~~~---~~~~~l~~~g~~~vvvt---~G~~G----~~~~~~------~~~~~~~~~~v~vvdttGAGDaF~ag~ 325 (381)
+|....+.+ ++++.+.+.|++.|||| .|.+| +++... ++.+.+..++++ ++++|+||+|+|+|
T Consensus 154 ~g~~~~~~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~A~~ 232 (296)
T PTZ00344 154 SGVEVKDLSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIE-GRYTGTGDLFAALL 232 (296)
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEeccccC-CCCCCchHHHHHHH
Confidence 997644333 45677878899999999 55556 444321 234556666665 57799999999999
Q ss_pred HHHHHcCCccccchHHHHHHHHHHHHHHHHHhhh
Q 016868 326 LSQLSTDFSLLQKEDQLRDALRFANACGALTVME 359 (381)
Q Consensus 326 l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~ 359 (381)
++.+.+| + +++|+++|.+.....+..
T Consensus 233 ~a~l~~g-~-------~~~a~~~A~a~~~~~i~~ 258 (296)
T PTZ00344 233 LAFSHQH-P-------MDLAVGKAMGVLQDIIKA 258 (296)
T ss_pred HHHHhcC-C-------HHHHHHHHHHHHHHHHHH
Confidence 9888887 8 999999998887766553
No 63
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=99.63 E-value=2.7e-15 Score=138.37 Aligned_cols=230 Identities=20% Similarity=0.254 Sum_probs=155.6
Q ss_pred EEEccceeecccCCCCCCcc----CCCCccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCe
Q 016868 64 VCFGEMLIDFVPTVSGLSLA----ESPAFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGM 139 (381)
Q Consensus 64 lviG~~~iD~~~~~~~~~~~----~~~~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v 139 (381)
+++|...+|+....++...- ......+..||.+.|.|.++++||.++.||++||+|..+++.+.
T Consensus 344 v~vGa~i~D~~~k~d~d~K~dG~sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~n~~~~~~------------ 411 (614)
T KOG3009|consen 344 VSVGATIVDFEAKTDEDVKDDGGSYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDNNGHFFRQ------------ 411 (614)
T ss_pred eeecceEEEeEEeecccccccCCcccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCCcchhhhh------------
Confidence 89999999999887764332 23456789999999999999999999999999999921111110
Q ss_pred eecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCe
Q 016868 140 RFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVV 219 (381)
Q Consensus 140 ~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~ 219 (381)
... ..-+...+++ +++++.+++ +.......++++ ++.+..+
T Consensus 412 ----------------------------~~~----~~~e~~~dl~-~a~~I~~Ds-----NiS~~~Ma~il~-ak~~k~~ 452 (614)
T KOG3009|consen 412 ----------------------------NSH----KIVESNEDLL-SADFILLDS-----NISVPVMARILE-AKKHKKQ 452 (614)
T ss_pred ----------------------------hhh----hhhhhhhhhh-cCCEEEEcC-----CCCHHHHHHHHH-hhhccCc
Confidence 000 0001112333 678887664 455667788888 8999999
Q ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHh-hhCCEEecCHHHHhhccCCC----CCC----hHH---HH---HHHHhcCCCEE
Q 016868 220 LSYDPNLRLPLWPSADKAREGILSIW-ETADIIKISEEEISFLTQGE----DPY----DDA---VV---YKLFHANLKLL 284 (381)
Q Consensus 220 v~~D~~~~~~~~~~~~~~~~~~~~~l-~~~dvl~~N~~E~~~l~~~~----~~~----~~~---~~---~~l~~~g~~~v 284 (381)
|+|+|.... .....++-++ ..++.++||..|+-...... .++ .+. .+ +.........+
T Consensus 453 V~fEPTd~~-------k~~K~fk~l~v~~i~~i~PN~~Ell~a~k~~~v~~nps~~q~~~~~~~~~~~~~~k~~~~~s~~ 525 (614)
T KOG3009|consen 453 VWFEPTDID-------KVKKVFKTLLVGAITAISPNANELLKAAKLCHVSVNPSVIQTADGVLELIEKEKTKLLLNTSIF 525 (614)
T ss_pred eEecCCCch-------hhhhhhhhcceeeEEeeCCCHHHHHHHhhcCceeeChhhhccchHHHHHHHHHHHHhhcccceE
Confidence 999996422 2233333222 35899999999984322211 110 011 11 12223456789
Q ss_pred EEEecCCceEEEeCC-----ceEEEccccc--cccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHh
Q 016868 285 LVTEGPDGCRYYTKD-----FSGRVQGLKV--EAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTV 357 (381)
Q Consensus 285 vvt~G~~G~~~~~~~-----~~~~~~~~~v--~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~ 357 (381)
|+|...+|.++..++ +....|++.. ++++..||||+|+++|+.+++++.+ +.+++.-+..++-...
T Consensus 526 I~tl~~~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~~g~i~~l~~~~~-------v~es~~gg~~~~rall 598 (614)
T KOG3009|consen 526 IVTLANKGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFNSGVIAGLAHNKT-------VVESLQGGQECARALL 598 (614)
T ss_pred EEEeccCceEEEecCCCCCcccccCCCcccccceeEeccCCcccccceeehhhcCcc-------hHhhccccHHHHHHHH
Confidence 999999999887665 2344455543 6999999999999999999999999 9999999955554443
Q ss_pred h
Q 016868 358 M 358 (381)
Q Consensus 358 ~ 358 (381)
+
T Consensus 599 s 599 (614)
T KOG3009|consen 599 S 599 (614)
T ss_pred h
Confidence 3
No 64
>PLN02978 pyridoxal kinase
Probab=99.61 E-value=9.5e-14 Score=129.11 Aligned_cols=162 Identities=16% Similarity=0.061 Sum_probs=116.8
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHH--CCCeEEEeCCCCC--CCCCCHHHHHHHHH-HHhhhCCEEecCHHHHhhc
Q 016868 187 AKIFHYGSISLITEPCKSAHIAAAKAAKD--AGVVLSYDPNLRL--PLWPSADKAREGIL-SIWETADIIKISEEEISFL 261 (381)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~--~g~~v~~D~~~~~--~~~~~~~~~~~~~~-~~l~~~dvl~~N~~E~~~l 261 (381)
++.+.++. +.++...+.+.++++.+++ .++++++||.++. .+|... ...+.+. .+++.+|+++||..|++.|
T Consensus 87 ~~ai~~G~--l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~-~~~~~~~~~ll~~adiitPN~~Ea~~L 163 (308)
T PLN02978 87 YTHLLTGY--IGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPP-ELVPVYREKVVPLATMLTPNQFEAEQL 163 (308)
T ss_pred cCEEEecc--cCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCCh-hHHHHHHHHHHhhCCeeccCHHHHHHH
Confidence 56665553 3355566777888888876 4578999998654 455433 3445554 5899999999999999999
Q ss_pred cCCCCCCh---HHHHHHHHhcCCCEEEEEecC-CceEEE-e--------CCceEEEccccccccCCCCccHHHHHHHHHH
Q 016868 262 TQGEDPYD---DAVVYKLFHANLKLLLVTEGP-DGCRYY-T--------KDFSGRVQGLKVEAVDATGAGDAFVAGILSQ 328 (381)
Q Consensus 262 ~~~~~~~~---~~~~~~l~~~g~~~vvvt~G~-~G~~~~-~--------~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~ 328 (381)
+|....+. .++++.+.+.|++.||||.+. +|.... . .++.+++..++++.. ++|+||+|+|.+++.
T Consensus 164 ~g~~~~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~GtGD~fsA~laa~ 242 (308)
T PLN02978 164 TGIRIVTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIPAY-FTGTGDLMAALLLGW 242 (308)
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCCCC-CCCchHHHHHHHHHH
Confidence 99764433 355677888999999998754 343322 1 124566777777655 589999999988888
Q ss_pred HHcC-CccccchHHHHHHHHHHHHHHHHHhhh
Q 016868 329 LSTD-FSLLQKEDQLRDALRFANACGALTVME 359 (381)
Q Consensus 329 l~~g-~~~~~~~~~l~~al~~A~~~Aa~~~~~ 359 (381)
+.+| .+ +++|++.|...-...++.
T Consensus 243 l~~g~~~-------l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 243 SHKYPDN-------LDKAAELAVSSLQAVLRR 267 (308)
T ss_pred HhcCCcC-------HHHHHHHHHHHHHHHHHH
Confidence 8887 68 999999998877766554
No 65
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.61 E-value=2.9e-14 Score=141.54 Aligned_cols=161 Identities=15% Similarity=0.162 Sum_probs=121.3
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHCCCe-EEEeCCCCC---CCCCCHHHHHHHH-HHHhhhCCEEecCHHHHhhc
Q 016868 187 AKIFHYGSISLITEPCKSAHIAAAKAAKDAGVV-LSYDPNLRL---PLWPSADKAREGI-LSIWETADIIKISEEEISFL 261 (381)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~-v~~D~~~~~---~~~~~~~~~~~~~-~~~l~~~dvl~~N~~E~~~l 261 (381)
.+.+.++.+. +.+.+..+++.+++.+.+ +++||.... ..+.+. ...+.+ .++++.+|+++||..|++.|
T Consensus 79 ~~aik~G~l~-----~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~-~~~~~l~~~Ll~~adiitPN~~Ea~~L 152 (502)
T PLN02898 79 VDVVKTGMLP-----SAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGP-SILSALREELLPLATIVTPNVKEASAL 152 (502)
T ss_pred CCEEEECCcC-----CHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCH-HHHHHHHHhhhccCeEEcCCHHHHHHH
Confidence 5666666431 245666777777877775 999995322 112222 233334 46889999999999999999
Q ss_pred cCCCC-CC---hHHHHHHHHhcCCCEEEEEecCCc------eEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHc
Q 016868 262 TQGED-PY---DDAVVYKLFHANLKLLLVTEGPDG------CRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLST 331 (381)
Q Consensus 262 ~~~~~-~~---~~~~~~~l~~~g~~~vvvt~G~~G------~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~ 331 (381)
+|... .+ ..++++.+.+.|++.|+||.|..+ .+++++++.++++.++++.+|++|+||+|+|+|++++++
T Consensus 153 ~g~~~~~~~~~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~t~GaGD~fsaaiaa~l~~ 232 (502)
T PLN02898 153 LGGDPLETVADMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRIKTRNTHGTGCTLASCIAAELAK 232 (502)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEecceeCCCCCCchhhhHHHHHHHHHHc
Confidence 97532 22 245667888899999999999753 356665666678888888899999999999999999999
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHhhhc
Q 016868 332 DFSLLQKEDQLRDALRFANACGALTVMER 360 (381)
Q Consensus 332 g~~~~~~~~~l~~al~~A~~~Aa~~~~~~ 360 (381)
|++ +++|+++|..+....+.+-
T Consensus 233 G~~-------l~eAv~~A~~~v~~ai~~~ 254 (502)
T PLN02898 233 GSD-------MLSAVKVAKRYVETALEYS 254 (502)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHhh
Confidence 999 9999999999999888763
No 66
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.61 E-value=2.1e-14 Score=142.58 Aligned_cols=148 Identities=19% Similarity=0.163 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCC----CCCCC--HHHHHHHH-HHHhhhCCEEecCHHHHhhccCCC-CCC---hHH
Q 016868 203 KSAHIAAAKAAKDAGVVLSYDPNLRL----PLWPS--ADKAREGI-LSIWETADIIKISEEEISFLTQGE-DPY---DDA 271 (381)
Q Consensus 203 ~~~~~~~l~~a~~~g~~v~~D~~~~~----~~~~~--~~~~~~~~-~~~l~~~dvl~~N~~E~~~l~~~~-~~~---~~~ 271 (381)
.+.+..+++.++ +.++++||.... .++.. .+...+.+ ..+++.+|+++||..|++.|+|.. ..+ ..+
T Consensus 311 ~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~~~~~~~ 388 (504)
T PTZ00347 311 ARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGRKEITGVYEARA 388 (504)
T ss_pred HHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCCCCCCCHHHHHH
Confidence 455556666554 678999997532 22321 11112233 257899999999999999999964 222 235
Q ss_pred HHHHHHhcCCCEEEEEecCCc-------eEEEeC--CceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHH
Q 016868 272 VVYKLFHANLKLLLVTEGPDG-------CRYYTK--DFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQL 342 (381)
Q Consensus 272 ~~~~l~~~g~~~vvvt~G~~G-------~~~~~~--~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l 342 (381)
+++.+.+.|++.|+||.|.+| .+++.. ++.++++.++++++|++|+||+|+|+|++++++|.+ +
T Consensus 389 aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~GaGD~fsaaiaa~la~G~~-------l 461 (504)
T PTZ00347 389 AAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTANRIATINTHGTGCTLASAISSFLARGYT-------V 461 (504)
T ss_pred HHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeECCCCCCChHHHHHHHHHHHHhCCCC-------H
Confidence 667888899999999999863 345543 345678888889999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 016868 343 RDALRFANACGALTVME 359 (381)
Q Consensus 343 ~~al~~A~~~Aa~~~~~ 359 (381)
++|+++|...-...+..
T Consensus 462 ~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 462 PDAVERAIGYVHEAIVR 478 (504)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999998887766654
No 67
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.54 E-value=3.8e-13 Score=121.29 Aligned_cols=161 Identities=19% Similarity=0.169 Sum_probs=110.4
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCC---CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhcc
Q 016868 186 KAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRL---PLWPSADKAREGILSIWETADIIKISEEEISFLT 262 (381)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~---~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 262 (381)
..+.+.++.+ .+. +.+..+.+..++.+.++++||.... ......+......+.+++.+|+++||..|++.|+
T Consensus 60 ~~~aikiG~l--~~~---~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~ 134 (246)
T PF08543_consen 60 KFDAIKIGYL--GSA---EQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLT 134 (246)
T ss_dssp C-SEEEE-S---SSH---HHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHH
T ss_pred cccEEEEccc--CCc---hhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHh
Confidence 5677777753 233 3344444555567789999995421 1122233333344449999999999999999999
Q ss_pred CCCCCChH---HHHHHHHhcCCCEEEEEecCC----c---eEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcC
Q 016868 263 QGEDPYDD---AVVYKLFHANLKLLLVTEGPD----G---CRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTD 332 (381)
Q Consensus 263 ~~~~~~~~---~~~~~l~~~g~~~vvvt~G~~----G---~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g 332 (381)
+.+..+.+ +++++|++.|++.|+||-+.. + .+++.+++.+++..+..+..+..|.||.|+|+|++.|++|
T Consensus 135 g~~i~~~~~~~~~~~~l~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fss~laa~l~~g 214 (246)
T PF08543_consen 135 GREINSEEDIEEAAKALLALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFSSALAAFLAKG 214 (246)
T ss_dssp TS--SSHHHHHHHHHHHHHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCChHhHHHHHHHHHHhCCceEEEeeeccccccccccceeeeccceeecceeEEcCCCCCCchhHHHHHHHHHHHcC
Confidence 97665543 456888889999999998863 2 3445566677777777766789999999999999999999
Q ss_pred CccccchHHHHHHHHHHHHHHHHHhh
Q 016868 333 FSLLQKEDQLRDALRFANACGALTVM 358 (381)
Q Consensus 333 ~~~~~~~~~l~~al~~A~~~Aa~~~~ 358 (381)
.+ +++|++.|...-...+.
T Consensus 215 ~~-------l~~Av~~A~~~v~~~i~ 233 (246)
T PF08543_consen 215 YS-------LEEAVEKAKNFVRRAIK 233 (246)
T ss_dssp SS-------HHHHHHHHHHHHHHHHH
T ss_pred CC-------HHHHHHHHHHHHHHHHH
Confidence 99 99999999888776665
No 68
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.53 E-value=1.6e-13 Score=136.77 Aligned_cols=158 Identities=18% Similarity=0.161 Sum_probs=112.1
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCC----CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhcc
Q 016868 187 AKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRL----PLWPSADKAREGILSIWETADIIKISEEEISFLT 262 (381)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 262 (381)
.+.+.++- +.+....+.+.++++..+ +.+|++||..+. .++ .+...+.++++++.+|+++||..|++.|+
T Consensus 99 ~~aikiG~--l~s~~~i~~v~~~l~~~~--~~~vVlDPv~~~~~G~~l~--~~~~~~~~~~Ll~~advItPN~~Ea~~Lt 172 (530)
T PRK14713 99 VDAVKIGM--LGDAEVIDAVRTWLAEHR--PPVVVLDPVMVATSGDRLL--EEDAEAALRELVPRADLITPNLPELAVLL 172 (530)
T ss_pred CCEEEECC--cCCHHHHHHHHHHHHhCC--CCCEEECCcccCCCCCCCC--CHHHHHHHHHHhhhhheecCChHHHHHHh
Confidence 46666653 223334445555554332 346899997643 333 23456677789999999999999999999
Q ss_pred CCCCC-ChH---HHHHHHHhcCCCEEEEEecCCc-----eEEEe-CCceEEEccccccccCCCCccHHHHHHHHHHHHcC
Q 016868 263 QGEDP-YDD---AVVYKLFHANLKLLLVTEGPDG-----CRYYT-KDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTD 332 (381)
Q Consensus 263 ~~~~~-~~~---~~~~~l~~~g~~~vvvt~G~~G-----~~~~~-~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g 332 (381)
|.... +.+ ++++++.+.+...||||.|..+ ..++. +++.++++.++++.+|++|+||+|.|+|+++|++|
T Consensus 173 g~~~~~~~~d~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v~~~~t~GaGD~fsaalaa~La~G 252 (530)
T PRK14713 173 GEPPATTWEEALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRVDTRNTHGTGCSLSSALATRLGRG 252 (530)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEeeeeeCCCCCCcHHHHHHHHHHHHHHCC
Confidence 96532 223 3456776655568999988642 34444 34467788888899999999999999999999999
Q ss_pred CccccchHHHHHHHHHHHHHHHHHh
Q 016868 333 FSLLQKEDQLRDALRFANACGALTV 357 (381)
Q Consensus 333 ~~~~~~~~~l~~al~~A~~~Aa~~~ 357 (381)
.+ +++|+++|...-...+
T Consensus 253 ~~-------l~eAv~~A~~~v~~~i 270 (530)
T PRK14713 253 GD-------WAAALRWATAWLHGAI 270 (530)
T ss_pred CC-------HHHHHHHHHHHHHHHH
Confidence 99 9999999988443333
No 69
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.52 E-value=1.1e-12 Score=116.06 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHCC-CeEEEeCCCCCCC---CCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCC-CCCChH---HHHH
Q 016868 203 KSAHIAAAKAAKDAG-VVLSYDPNLRLPL---WPSADKAREGILSIWETADIIKISEEEISFLTQG-EDPYDD---AVVY 274 (381)
Q Consensus 203 ~~~~~~~l~~a~~~g-~~v~~D~~~~~~~---~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~-~~~~~~---~~~~ 274 (381)
.+.+..+.+..++++ .++++||....+- ....+......++++|.+++++||..|++.|+|. ...+.+ ++++
T Consensus 84 ~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~~~~d~~~a~~ 163 (263)
T COG0351 84 AEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIKTEEDMKEAAK 163 (263)
T ss_pred HHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccCCHHHHHHHHH
Confidence 466677777888888 7799999532221 1123334445558999999999999999999995 554444 3445
Q ss_pred HHHhcCCCEEEEEecCCc----eEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHH
Q 016868 275 KLFHANLKLLLVTEGPDG----CRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFAN 350 (381)
Q Consensus 275 ~l~~~g~~~vvvt~G~~G----~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~ 350 (381)
.+.+.|++.|+||-|... -++|+++..+.+..+.++-.++.|+|++|.+++.+.|++|.+ +++|++.|-
T Consensus 164 ~i~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~ri~t~~tHGTGCTlSaAIaa~LA~G~~-------l~~AV~~Ak 236 (263)
T COG0351 164 LLHELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAPRIPTKNTHGTGCTLSAAIAANLAKGLS-------LEEAVKKAK 236 (263)
T ss_pred HHHHhCCCEEEEcCCCCCCCceeEEEcCCceEEEeccccCCCCCCCccHHHHHHHHHHHHcCCC-------HHHHHHHHH
Confidence 677899999999988643 366666677788899999999999999999999999999999 999999999
Q ss_pred HHHHHHhh
Q 016868 351 ACGALTVM 358 (381)
Q Consensus 351 ~~Aa~~~~ 358 (381)
..-...++
T Consensus 237 ~fv~~AI~ 244 (263)
T COG0351 237 EFVTRAIR 244 (263)
T ss_pred HHHHHHHh
Confidence 88888777
No 70
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.50 E-value=8.1e-13 Score=119.99 Aligned_cols=157 Identities=15% Similarity=-0.012 Sum_probs=114.3
Q ss_pred hcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHH--HHHhhhCCEEecCHHHHhh
Q 016868 183 LITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGI--LSIWETADIIKISEEEISF 260 (381)
Q Consensus 183 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~--~~~l~~~dvl~~N~~E~~~ 260 (381)
.+.+.|+++++.- +... +....+++.+++++.++++|+.... ..... ..+.+..++++||..|++.
T Consensus 74 ~~~~~d~v~ig~g-l~~~---~~~~~i~~~~~~~~~pvVlDa~~~~--------~~~~~~~~~~~~~~~iltPn~~E~~~ 141 (254)
T cd01171 74 LLERADAVVIGPG-LGRD---EEAAEILEKALAKDKPLVLDADALN--------LLADEPSLIKRYGPVVLTPHPGEFAR 141 (254)
T ss_pred hhccCCEEEEecC-CCCC---HHHHHHHHHHHhcCCCEEEEcHHHH--------HhhcChhhhccCCCEEECCCHHHHHH
Confidence 3556788887652 2121 5667788888888999999985211 00000 0235678999999999999
Q ss_pred ccCCCCCC----hHHHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccc
Q 016868 261 LTQGEDPY----DDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLL 336 (381)
Q Consensus 261 l~~~~~~~----~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~ 336 (381)
|++....+ ..++++++.+.+. .+||..| .+.+++++++.++++....+.++++|+||+|+|.+.+.+.+|++
T Consensus 142 L~g~~~~~~~~~~~~~a~~l~~~~~-~~vvlkG-~~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~g~~-- 217 (254)
T cd01171 142 LLGALVEEIQADRLAAAREAAAKLG-ATVVLKG-AVTVIADPDGRVYVNPTGNPGLATGGSGDVLAGIIAALLAQGLS-- 217 (254)
T ss_pred HhCCChhhhhhHHHHHHHHHHHHcC-cEEEEcC-CCCEEECCCCcEEEECCCCcccccCchHHHHHHHHHHHHHcCCC--
Confidence 99875432 1355677777764 5566677 56677776556677777788999999999998888888889999
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhc
Q 016868 337 QKEDQLRDALRFANACGALTVMER 360 (381)
Q Consensus 337 ~~~~~l~~al~~A~~~Aa~~~~~~ 360 (381)
+.+|+++|+.+.+.+.+..
T Consensus 218 -----~~eA~~~A~~~~~~a~~~~ 236 (254)
T cd01171 218 -----PLEAAALAVYLHGLAGDLA 236 (254)
T ss_pred -----HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887753
No 71
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.49 E-value=4.4e-13 Score=138.59 Aligned_cols=159 Identities=14% Similarity=0.129 Sum_probs=117.3
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHC-CCeEEEeCCCCC----CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhc
Q 016868 187 AKIFHYGSISLITEPCKSAHIAAAKAAKDA-GVVLSYDPNLRL----PLWPSADKAREGILSIWETADIIKISEEEISFL 261 (381)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~-g~~v~~D~~~~~----~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l 261 (381)
.+.+.++-+ .+ .+.+..+.+.+++. +.++++||.... .++ .+...+.+.++++.+|+++||..|++.|
T Consensus 311 ~~aiKiGmL--~s---~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~--~~~~~~~l~~Llp~adlItPN~~Ea~~L 383 (755)
T PRK09517 311 VDAVKLGML--GS---ADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLL--DADATEALRRLAVHVDVVTPNIPELAVL 383 (755)
T ss_pred CCEEEECCC--CC---HHHHHHHHHHHHhCCCCCEEEecccccCCCCCCC--CHHHHHHHHHHhCcccCccCCHHHHHHH
Confidence 466666532 22 35555666666664 467999996532 222 1234455667899999999999999999
Q ss_pred cCCC-CCCh---HHHHHHHHhcCCCEEEEEecC------CceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHc
Q 016868 262 TQGE-DPYD---DAVVYKLFHANLKLLLVTEGP------DGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLST 331 (381)
Q Consensus 262 ~~~~-~~~~---~~~~~~l~~~g~~~vvvt~G~------~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~ 331 (381)
+|.. ..+. .++++.+.+.+...||||.|. .|+++..++..++++.++++.+|++|+||+|+|+|++++++
T Consensus 384 ~g~~~~~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v~~~~t~GaGDtfsaaiaa~La~ 463 (755)
T PRK09517 384 CGEAPAITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPDGSVHQVENPRVNTTNSHGTGCSLSAALATLIAA 463 (755)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCCCeEEEEeecccCCCCCcChHHHHHHHHHHHHHC
Confidence 9953 2222 244567766544589999983 46666655556788998999999999999999999999999
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHhhh
Q 016868 332 DFSLLQKEDQLRDALRFANACGALTVME 359 (381)
Q Consensus 332 g~~~~~~~~~l~~al~~A~~~Aa~~~~~ 359 (381)
|.+ +++|+++|.......+.+
T Consensus 464 G~s-------l~eAv~~A~~~v~~~i~~ 484 (755)
T PRK09517 464 GES-------VEKALEWATRWLNEALRH 484 (755)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHh
Confidence 999 999999999988877754
No 72
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.48 E-value=2.2e-12 Score=115.69 Aligned_cols=164 Identities=18% Similarity=0.012 Sum_probs=115.9
Q ss_pred hhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhh--CCEEecCHHHH
Q 016868 181 LSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWET--ADIIKISEEEI 258 (381)
Q Consensus 181 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~--~dvl~~N~~E~ 258 (381)
.+.++++|+++++.- +..+...+.+...++.+++.++++++||..... ... ..+.+.+++.. +|+++||..|+
T Consensus 44 ~~~l~~~d~vvi~~G-~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~---~~~-~~~~~~~ll~~~~~~ilTPN~~Ea 118 (242)
T cd01170 44 EELAKIAGALVINIG-TLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGA---TSF-RTEVAKELLAEGQPTVIRGNASEI 118 (242)
T ss_pred HHHHHHcCcEEEeCC-CCChHHHHHHHHHHHHHHhcCCCEEEcccccCc---chh-HHHHHHHHHhcCCCeEEcCCHHHH
Confidence 356788898887532 234445566667777788899999999964321 111 11334455554 99999999999
Q ss_pred hhccCCCCC------------ChHHHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHH
Q 016868 259 SFLTQGEDP------------YDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGIL 326 (381)
Q Consensus 259 ~~l~~~~~~------------~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l 326 (381)
..|++.... +..++++++.+.+...|++| |.... ++++++.++++..+....++.|+||+|+|++.
T Consensus 119 ~~L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~Vllk-G~~d~-l~~~~~~~~~~~~~~~~~~v~GtGdtLa~aiA 196 (242)
T cd01170 119 AALAGLTGLGKGVDSSSSDEEDALELAKALARKYGAVVVVT-GEVDY-ITDGERVVVVKNGHPLLTKITGTGCLLGAVIA 196 (242)
T ss_pred HHHhCCCCCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEE-CCCcE-EEECCEEEEEeCCCccccCCCchHHHHHHHHH
Confidence 999986532 22445677776666678888 65654 56666677777655445667999999999999
Q ss_pred HHHHcCCccccchHHHHHHHHHHHHHHHHHhh
Q 016868 327 SQLSTDFSLLQKEDQLRDALRFANACGALTVM 358 (381)
Q Consensus 327 ~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~ 358 (381)
+.+.+|.+ +.+|+..|...-+....
T Consensus 197 a~LA~g~~-------~~~A~~~A~~~~~~a~~ 221 (242)
T cd01170 197 AFLAVGDD-------PLEAAVSAVLVYGIAGE 221 (242)
T ss_pred HHHhCCCC-------HHHHHHHHHHHHHHHHH
Confidence 99999999 99999988766665553
No 73
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.40 E-value=1.6e-11 Score=109.20 Aligned_cols=165 Identities=24% Similarity=0.151 Sum_probs=119.7
Q ss_pred hcCCccEEEEccccccCchhHHHHHHHHHHHHHC--CCeEEEeCC--CCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHH
Q 016868 183 LITKAKIFHYGSISLITEPCKSAHIAAAKAAKDA--GVVLSYDPN--LRLPLWPSADKAREGILSIWETADIIKISEEEI 258 (381)
Q Consensus 183 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~--g~~v~~D~~--~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~ 258 (381)
.+..+|.++.+. +.+...-..+.++++..|+. .+.+++||. ....++...+-......++++.+|+++||..|+
T Consensus 70 ~~~~~davltGY--lgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fEL 147 (281)
T COG2240 70 KLGECDAVLTGY--LGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFEL 147 (281)
T ss_pred cccccCEEEEcc--CCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHH
Confidence 566788876664 34556667778888888877 455899994 233555544444444447999999999999999
Q ss_pred hhccCCCCCChHH---HHHHHHhcCCCEEEEEecCC-----ceEEEeCC---ceEEEccccccccCCCCccHHHHHHHHH
Q 016868 259 SFLTQGEDPYDDA---VVYKLFHANLKLLLVTEGPD-----GCRYYTKD---FSGRVQGLKVEAVDATGAGDAFVAGILS 327 (381)
Q Consensus 259 ~~l~~~~~~~~~~---~~~~l~~~g~~~vvvt~G~~-----G~~~~~~~---~~~~~~~~~v~vvdttGAGDaF~ag~l~ 327 (381)
+.|+|....+.++ +++.|.+.|+++|+||.=.. |.+++... ...|+- +.++ .+.+|.||.|+|.|++
T Consensus 148 e~Ltg~~~~~~~da~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~-~~~~GtGDL~sallla 225 (281)
T COG2240 148 EILTGKPLNTLDDAVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLVP-FIPNGTGDLFSALLLA 225 (281)
T ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh-hcCC-CCCCCchHHHHHHHHH
Confidence 9999998776654 44667778899999996433 45555443 222332 3333 3499999999999999
Q ss_pred HHHcCCccccchHHHHHHHHHHHHHHHHHhh
Q 016868 328 QLSTDFSLLQKEDQLRDALRFANACGALTVM 358 (381)
Q Consensus 328 ~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~ 358 (381)
.+++|.+ +++|+..+..+-...++
T Consensus 226 ~lL~g~~-------~~~al~~~~~~V~evl~ 249 (281)
T COG2240 226 RLLEGLS-------LTQALERATAAVYEVLQ 249 (281)
T ss_pred HHHcCCC-------HHHHHHHHHHHHHHHHH
Confidence 9999999 99999998877766554
No 74
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.38 E-value=1.5e-11 Score=112.65 Aligned_cols=175 Identities=15% Similarity=0.076 Sum_probs=116.9
Q ss_pred hhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhc
Q 016868 182 SLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFL 261 (381)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l 261 (381)
+.+..+|++.+++- +.... .+.++++.+++.+.++++|+.. .............+++++||..|++.|
T Consensus 88 ~~~~~~davvig~G-l~~~~---~~~~l~~~~~~~~~pvVlDa~g--------~~l~~~~~~~~~~~~vItPN~~El~~L 155 (272)
T TIGR00196 88 ELLERYDVVVIGPG-LGQDP---SFKKAVEEVLELDKPVVLDADA--------LNLLTYDKPKREGEVILTPHPGEFKRL 155 (272)
T ss_pred hhhccCCEEEEcCC-CCCCH---HHHHHHHHHHhcCCCEEEEhHH--------HHHHhhcccccCCCEEECCCHHHHHHH
Confidence 34567888888653 22221 2567788888889999999841 111121111123689999999999999
Q ss_pred cCCCCCCh---HHHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccc
Q 016868 262 TQGEDPYD---DAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQK 338 (381)
Q Consensus 262 ~~~~~~~~---~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~ 338 (381)
++....+. .++++++.+. .+.+|++.|..+.++..++..+ +...+....+++|+||++.|.+.+.+.+|.+
T Consensus 156 ~g~~~~~~~~~~~aa~~l~~~-~~~vVv~kG~~~~i~~~~~~~~-~~~~~~~~~~~~GaGD~lag~iaa~la~g~~---- 229 (272)
T TIGR00196 156 LGLVNEIQGDRLEAAQDIAQK-LQAVVVLKGAADVIAAPDGDLW-INKTGNAALAKGGTGDVLAGLIGGLLAQNLD---- 229 (272)
T ss_pred hCCchhhhhhHHHHHHHHHHH-hCCEEEEcCCCCEEEcCCCeEE-EECCCCCccCCCCchHHHHHHHHHHHhCCCC----
Confidence 99754332 3455666664 3458888999998665444444 4455567888999999966655566668988
Q ss_pred hHHHHHHHHHH---HHHHHHHhhhc-CCCCCCCCHHHHHHHHhCC
Q 016868 339 EDQLRDALRFA---NACGALTVMER-GAIPALPTREAVLNAIHAP 379 (381)
Q Consensus 339 ~~~l~~al~~A---~~~Aa~~~~~~-G~~~~~~~~~~v~~~l~~~ 379 (381)
+.+|+..| +..|+..+.+. |.. + .+.+||.+.+.+.
T Consensus 230 ---~~~A~~~a~~~~~~a~~~~~~~~g~~-~-~~~~dl~~~i~~~ 269 (272)
T TIGR00196 230 ---PFDAACNAAFAHGLAGDLALKNHGAY-G-LTALDLIEKIPRV 269 (272)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCC-C-cCHHHHHHHHHHH
Confidence 89999766 77777766444 533 2 5778887776543
No 75
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.29 E-value=1.5e-10 Score=106.85 Aligned_cols=134 Identities=11% Similarity=0.049 Sum_probs=94.4
Q ss_pred eEEEeCCCCCC---CCCC-HHHHHHHHHHHhhhCCEEecCHHHHhhccC-----CCCC--ChHHHHHHHHh-cCCCEEEE
Q 016868 219 VLSYDPNLRLP---LWPS-ADKAREGILSIWETADIIKISEEEISFLTQ-----GEDP--YDDAVVYKLFH-ANLKLLLV 286 (381)
Q Consensus 219 ~v~~D~~~~~~---~~~~-~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~-----~~~~--~~~~~~~~l~~-~g~~~vvv 286 (381)
++++||..... .+.. .+......+.+++.+|+++||..|++.|++ .... +..++++.+.+ +|++.|+|
T Consensus 107 ~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L~g~~~~~~~~~~~~~~~aA~~l~~~~G~~~Vli 186 (321)
T PTZ00493 107 LVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVILEALDCQMDLSKANMTELCKLVTEKLNINACLF 186 (321)
T ss_pred eEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHHhCCCcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 48999953221 1112 122333445699999999999999999998 2211 22456677876 69999999
Q ss_pred EecCCc------e------EEEeC---------------C------ceEEEccccccccCCCCccHHHHHHHHHHHHcCC
Q 016868 287 TEGPDG------C------RYYTK---------------D------FSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDF 333 (381)
Q Consensus 287 t~G~~G------~------~~~~~---------------~------~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~ 333 (381)
|-|... . +++.+ + +.+++..++++..++.|.||+|++++++.|++|.
T Consensus 187 KGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~hGTGc~fASAIAa~LA~G~ 266 (321)
T PTZ00493 187 KSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTYLYDVYKLRSKRKPGKDIHGTGCTLSTAIACYLAKKH 266 (321)
T ss_pred CcCCCcccccccccccceeEEecCCccccccccccccccccccccceEEEEEecccCCCCCCChHHHHHHHHHHHHHcCC
Confidence 987632 1 33321 1 1245666666667789999999999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhh
Q 016868 334 SLLQKEDQLRDALRFANACGALTVME 359 (381)
Q Consensus 334 ~~~~~~~~l~~al~~A~~~Aa~~~~~ 359 (381)
+ +++|++.|...-..++..
T Consensus 267 ~-------l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 267 N-------ILQSCIESKKYIYNCIRY 285 (321)
T ss_pred C-------HHHHHHHHHHHHHHHHHH
Confidence 9 999999998877766654
No 76
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.17 E-value=2.3e-09 Score=97.57 Aligned_cols=173 Identities=17% Similarity=0.058 Sum_probs=110.3
Q ss_pred ccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh--h
Q 016868 170 ADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWE--T 247 (381)
Q Consensus 170 ~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~ 247 (381)
+-|...++++. +.++.++.++++-- ...+...+.+..+++.+++.++++++||...... . ...+....+++ .
T Consensus 39 p~m~~~~~e~~-~~~~~~~alvi~~G-~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~---~-~~~~~~~~ll~~~~ 112 (263)
T PRK09355 39 PAMAHAPEEAE-EMAKIAGALVINIG-TLTEERIEAMLAAGKIANEAGKPVVLDPVGVGAT---S-YRTEFALELLAEVK 112 (263)
T ss_pred cccCCCHHHHH-HHHHhcCceEEeCC-CCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcc---h-hhHHHHHHHHHhcC
Confidence 33334444443 45566777776432 3344444456666777888899999999643221 1 11222233343 6
Q ss_pred CCEEecCHHHHhhccCCCCC-----------ChHHHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEccccccccCCCC
Q 016868 248 ADIIKISEEEISFLTQGEDP-----------YDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATG 316 (381)
Q Consensus 248 ~dvl~~N~~E~~~l~~~~~~-----------~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttG 316 (381)
+++++||..|+..|++.... +..++++.+.+.+...|++|-+. -++++++..+.++.-.....+.+|
T Consensus 113 ~~vItPN~~E~~~L~g~~~~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~~--d~I~~~~~~~~~~~g~~~~~~v~G 190 (263)
T PRK09355 113 PAVIRGNASEIAALAGEAAETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGEV--DYITDGERVVSVHNGHPLMTKVTG 190 (263)
T ss_pred CcEecCCHHHHHHHhCCCcccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECCC--cEEEeCCEEEEEeCCCcccCCccc
Confidence 89999999999999986421 22345567777665678888443 244555555555522223455699
Q ss_pred ccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHh
Q 016868 317 AGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTV 357 (381)
Q Consensus 317 AGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~ 357 (381)
+||++.|.+.+.+..|.+ +.+|+..|...-+.+-
T Consensus 191 tGc~L~~~iaa~lA~g~~-------~~~A~~~A~~~~~~a~ 224 (263)
T PRK09355 191 TGCLLSAVVAAFAAVEKD-------YLEAAAAACAVYGIAG 224 (263)
T ss_pred ccHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHH
Confidence 999999999999999998 8888887776655543
No 77
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.10 E-value=4.7e-09 Score=94.68 Aligned_cols=170 Identities=17% Similarity=0.037 Sum_probs=105.5
Q ss_pred ccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh--hCC
Q 016868 172 MLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWE--TAD 249 (381)
Q Consensus 172 ~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~--~~d 249 (381)
|...++++. +.+..++.+.+.--.+ .+...+.+..+++.+++.++++++||..... +. ...+....+++ .++
T Consensus 36 m~~~~~e~~-~~~~~~~al~ik~G~l-~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~---s~-~r~~~~~~Ll~~~~~~ 109 (249)
T TIGR00694 36 MSEAEEEVA-ELAKIAGALVINIGTL-DKESIEAMIAAGKSANELGVPVVLDPVGVGA---TK-FRTETALELLSEGRFA 109 (249)
T ss_pred hcCCHHHHH-HHHHHcCceEEeCCCC-CHHHHHHHHHHHHHHHhcCCCEEEccccccc---ch-hHHHHHHHHHhhcCCc
Confidence 334444443 4455666666543223 3333556667777788889999999964322 11 11233345665 479
Q ss_pred EEecCHHHHhhccCCCC-----------CChHHHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEccccccccCCCCcc
Q 016868 250 IIKISEEEISFLTQGED-----------PYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAG 318 (381)
Q Consensus 250 vl~~N~~E~~~l~~~~~-----------~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAG 318 (381)
+++||..|++.|++... .+..++++.+.+.+...|++|-+ .- +++++++.+.+..-+...-..+|.|
T Consensus 110 vITpN~~E~~~L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~VllkG~-~D-~i~~~~~~~~~~~g~~~~~~~~GtG 187 (249)
T TIGR00694 110 AIRGNAGEIASLAGETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVITGE-VD-YVSDGTSVYTIHNGTELLGKITGSG 187 (249)
T ss_pred eeCCCHHHHHHHhCCCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEECC-Cc-EEEeCCEEEEECCCChHHhCCccch
Confidence 99999999999998541 11234556776654446777544 32 4555555555433221112247999
Q ss_pred HHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHH
Q 016868 319 DAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALT 356 (381)
Q Consensus 319 DaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~ 356 (381)
|++.+.+.+.+.+|.+ +.+|+..|...-..+
T Consensus 188 c~LssaIaa~LA~g~~-------~~~A~~~A~~~~~~a 218 (249)
T TIGR00694 188 CLLGSVVAAFCAVEED-------PLDAAISACLLYKIA 218 (249)
T ss_pred HHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHH
Confidence 9999999999999998 888888886444333
No 78
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=98.79 E-value=3.1e-07 Score=80.39 Aligned_cols=160 Identities=22% Similarity=0.133 Sum_probs=100.2
Q ss_pred hcCCccEEEEccccccCchhHHHHHHHHHHHHHCC--CeEEEeCC--CCCCCCCCHHHHHHHHHH-HhhhCCEEecCHHH
Q 016868 183 LITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAG--VVLSYDPN--LRLPLWPSADKAREGILS-IWETADIIKISEEE 257 (381)
Q Consensus 183 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g--~~v~~D~~--~~~~~~~~~~~~~~~~~~-~l~~~dvl~~N~~E 257 (381)
.+...+.+..+.+ .+...-..+.++.+..|+.+ ...++||. ...+++.+.+ .....++ +.+.+|+++||..|
T Consensus 78 n~~~Y~~vLTGY~--~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~ee-lipvYr~~i~~ladiiTPNqFE 154 (308)
T KOG2599|consen 78 NLNKYDAVLTGYL--PNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEE-LIPVYRDLIIPLADIITPNQFE 154 (308)
T ss_pred cccccceeeeecc--CChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHH-HHHHHHHhhcchhhhcCCcchh
Confidence 3446676654432 23334455666677666654 55668994 3445555443 3333444 44569999999999
Q ss_pred HhhccCCCCCChHHH---HHHHHhcCCCEEEEEecCC----ceEEE----eC-CceEEEccccccccCCCCccHHHHHHH
Q 016868 258 ISFLTQGEDPYDDAV---VYKLFHANLKLLLVTEGPD----GCRYY----TK-DFSGRVQGLKVEAVDATGAGDAFVAGI 325 (381)
Q Consensus 258 ~~~l~~~~~~~~~~~---~~~l~~~g~~~vvvt~G~~----G~~~~----~~-~~~~~~~~~~v~vvdttGAGDaF~ag~ 325 (381)
++.|+|....+.+++ .+.|+++|++.||||...- |..++ .. .+.+.+..|+++. --+|.||.|+|-+
T Consensus 155 ~EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki~~-~FtGTGDLfsaLL 233 (308)
T KOG2599|consen 155 AEILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKIDG-VFTGTGDLFSALL 233 (308)
T ss_pred hhhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEecccce-EEecccHHHHHHH
Confidence 999999998877654 4678889999999996543 41222 12 2444444444332 2489999999988
Q ss_pred HHHHHcCCccccchHHHHHHHHHHH
Q 016868 326 LSQLSTDFSLLQKEDQLRDALRFAN 350 (381)
Q Consensus 326 l~~l~~g~~~~~~~~~l~~al~~A~ 350 (381)
++.+.+..+ ..++..+++.+.
T Consensus 234 la~~~~~~~----~~~l~~a~e~~l 254 (308)
T KOG2599|consen 234 LAWLHESPD----NDDLSKAVEQVL 254 (308)
T ss_pred HHHHhcCCC----cchHHHHHHHHH
Confidence 888776542 223555555443
No 79
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=98.56 E-value=2.7e-06 Score=79.20 Aligned_cols=161 Identities=17% Similarity=0.069 Sum_probs=110.9
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCC---CCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccC
Q 016868 187 AKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLR---LPLWPSADKAREGILSIWETADIIKISEEEISFLTQ 263 (381)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~---~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~ 263 (381)
++++-.+= +.++.....+.+.++. .+-.++++||... .......+...-..++++|.+|++.||..|+-.|++
T Consensus 93 C~VvKTGM--L~~~~I~~vi~q~l~~--~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~ 168 (523)
T KOG2598|consen 93 CDVVKTGM--LPSPEIVKVIEQSLQK--FNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILLK 168 (523)
T ss_pred ccEEeecC--cCchHHHHHHHHHHHh--hcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHHh
Confidence 55554442 3333223333444443 2334688998421 111222344556777899999999999999999988
Q ss_pred CCC------CC---hHHHHHHHHhcCCCEEEEEecCCce-----------------EEEeCCceEEEccccccccCCCCc
Q 016868 264 GED------PY---DDAVVYKLFHANLKLLLVTEGPDGC-----------------RYYTKDFSGRVQGLKVEAVDATGA 317 (381)
Q Consensus 264 ~~~------~~---~~~~~~~l~~~g~~~vvvt~G~~G~-----------------~~~~~~~~~~~~~~~v~vvdttGA 317 (381)
... .+ .+..++.+.+.|++.|+|+.|.-.. ++|++.+.+.++.+-+.-..+.|.
T Consensus 169 ~~~~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~~t~~tHGt 248 (523)
T KOG2598|consen 169 KEKREISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYLATKHTHGT 248 (523)
T ss_pred hcccCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEecccccccccccCc
Confidence 422 12 2344577888999999999875321 345566778888888888999999
Q ss_pred cHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhh
Q 016868 318 GDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVM 358 (381)
Q Consensus 318 GDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~ 358 (381)
|.++++++++.|+.|.+ +.+|...|...--.+++
T Consensus 249 gCtLaSAIASnLA~g~s-------l~qAv~~ai~yvq~Ai~ 282 (523)
T KOG2598|consen 249 GCTLASAIASNLARGYS-------LLQAVQGAIEYVQNAIA 282 (523)
T ss_pred cchHHHHHHHHHhhcCC-------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999988776555444
No 80
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=98.17 E-value=0.00011 Score=71.00 Aligned_cols=163 Identities=14% Similarity=0.098 Sum_probs=89.0
Q ss_pred ccCCChHHHHHHHHHHcCCce--EEEeecCCChHHHHHHHHHHHC-CCCCC------Ceee------cCCCCceEEEEEe
Q 016868 90 KAPGGAPANVAVGIARLGGSS--AFIGKVGADEFGYMLADILKEN-NVNGA------GMRF------DPGARTALAFVTL 154 (381)
Q Consensus 90 ~~~GG~~~NvA~~la~LG~~v--~li~~vG~D~~g~~i~~~l~~~-gi~~~------~v~~------~~~~~t~~~~~~~ 154 (381)
.+.||.+..+|..++++|.++ .+...++. ...+.|... +|-.- .+.. .++.++...+++-
T Consensus 99 ~rmGGqAgimAn~la~lg~~~vV~~~p~lsk-----~qa~lf~~~~~i~~P~~e~g~l~l~~p~e~~~~~d~~~IH~I~E 173 (463)
T PRK03979 99 ERMGGQAGIISNLLAILDLKKVIAYTPWLSK-----KQAEMFVDSDNLLYPVVENGKLVLKKPREAYKPNDPLKINRIFE 173 (463)
T ss_pred EEeCChHHHHHHHHHhcCCceEEEeCCCCCH-----HHHHHhCCCCCeeeccccCCceeeccchhhccCCCCcceEEEEE
Confidence 579999999999999999884 44444554 334444221 11110 0000 0122223444443
Q ss_pred cCCCCc--------------eEEEecCCCccccCChhccchhhc----CCccEEEEccccccCch-----h----HHHHH
Q 016868 155 RSDGER--------------EFMFYRNPSADMLLQEAELDLSLI----TKAKIFHYGSISLITEP-----C----KSAHI 207 (381)
Q Consensus 155 ~~~g~~--------------~~~~~~~~~~~~~~~~~~l~~~~i----~~~~~~~~~~~~~~~~~-----~----~~~~~ 207 (381)
.+.|.+ +|+...++........+++. +.+ ..+|.++++|+..+.+. . .+...
T Consensus 174 y~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l~~~eef~-~~L~ei~~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~ 252 (463)
T PRK03979 174 FKKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRIEIKDELK-EFLPEIGKMVDGAILSGYQGIKEEYSDGKTAEYYLKRAK 252 (463)
T ss_pred eCCCCEEEecCccEecCCCCeEEEecCCCCccceecHHHH-HHHHhhccCCCEEEEechhhhhccccccccHHHHHHHHH
Confidence 344432 22222111111111112222 223 45899999999776551 1 12222
Q ss_pred HHHHHH--HHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhcc
Q 016868 208 AAAKAA--KDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLT 262 (381)
Q Consensus 208 ~~l~~a--~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 262 (381)
+.++.. +..++++-+.... +.+.+-....+..+++++|.+-+|+.|+..+.
T Consensus 253 ~~i~~L~~~~~~i~iH~E~As----~~~~~ir~~i~~~ilp~vDSlGmNE~ELa~l~ 305 (463)
T PRK03979 253 EDIKLLKKKNKDIKIHVEFAS----IQNREIRKKIITYILPHVDSVGMDETEIANIL 305 (463)
T ss_pred HHHHHHhhCCCCceEEEEecc----ccCHHHHHHHHHhhccccccccCCHHHHHHHH
Confidence 333333 3457888888754 33456666777789999999999999999765
No 81
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=98.07 E-value=0.00018 Score=69.08 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=90.7
Q ss_pred ccCCChHHHHHHHHHHcCCce--EEEeecCCChHHHHHHHHHHHC-CCCCC------Ceee------cCCCCceEEEEEe
Q 016868 90 KAPGGAPANVAVGIARLGGSS--AFIGKVGADEFGYMLADILKEN-NVNGA------GMRF------DPGARTALAFVTL 154 (381)
Q Consensus 90 ~~~GG~~~NvA~~la~LG~~v--~li~~vG~D~~g~~i~~~l~~~-gi~~~------~v~~------~~~~~t~~~~~~~ 154 (381)
.+.||.+..+|..++++|.++ .+...++. ...+.|.+. +|-.- .+.. .++.++...+++-
T Consensus 86 ~rmGGqAgimAn~la~lg~~~vI~~~~~ls~-----~qa~lf~~~~ni~~p~~e~g~l~l~~~~e~~~e~d~~~IH~I~E 160 (446)
T TIGR02045 86 ERMGGQAGIISNLLGRLGLKKVIAYTPFLSK-----RQAEMFVATGNILYPVVENGKLVLKPPGEAYREGDPSKVNRIFE 160 (446)
T ss_pred eeeCCHHHHHHHHHHhcCCceEEEeCCCCCH-----HHHHHhCCcCceeeccccCCceeeccchhccCCCCCCceEEEEE
Confidence 579999999999999999885 33444443 334444443 11100 0000 0122222444433
Q ss_pred cCCCCc--------------eEEEecCCCccccC-Chhccc---hhhcCCccEEEEccccccCch---------hHHHHH
Q 016868 155 RSDGER--------------EFMFYRNPSADMLL-QEAELD---LSLITKAKIFHYGSISLITEP---------CKSAHI 207 (381)
Q Consensus 155 ~~~g~~--------------~~~~~~~~~~~~~~-~~~~l~---~~~i~~~~~~~~~~~~~~~~~---------~~~~~~ 207 (381)
.+.|.+ +|+...++. +..+ ..+++. .+.-..+|.++++|+..+.+. ..+...
T Consensus 161 y~~G~~~~lg~~~~~aPRaNRfI~s~D~~-n~~l~~~~~l~~~~~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~ 239 (446)
T TIGR02045 161 FRKGTNFKLGGETIKVPRSGRFIVSSRPE-SLRIETKDQLRKFLPEIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERAK 239 (446)
T ss_pred eCCCCeeecCCceEeccCCCeEEEecCCc-cccceecHHHHHhhhhhhhcccEEEEEchhhhhhhccCCccHhHHHHHHH
Confidence 333332 222221111 1111 111111 233356899999999776542 122333
Q ss_pred HHHHHHHH-CCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhcc
Q 016868 208 AAAKAAKD-AGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLT 262 (381)
Q Consensus 208 ~~l~~a~~-~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~ 262 (381)
+.++..++ .++++-+.... +.+.+-....+..+++.+|.+-+|+.|+..++
T Consensus 240 ~~i~~L~~~~~i~iH~E~As----~~~~~l~~~i~~~ilp~vDSlGMNE~ELa~ll 291 (446)
T TIGR02045 240 EDIELLKKNKDLKIHVEFAS----IQNREIRKKVVTNIFPHVDSVGMDEAEIANVL 291 (446)
T ss_pred HHHHHHhhCCCCeEEEEecc----cccHHHHHHHHHhhccccccccCCHHHHHHHH
Confidence 44444433 67888888754 33456667777789999999999999999877
No 82
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=98.07 E-value=0.00041 Score=66.79 Aligned_cols=236 Identities=18% Similarity=0.225 Sum_probs=125.7
Q ss_pred cccCCChHHHHHHHHHHcCCceEE-EeecCCChHHHHHHHHHHHCCCCCCCe-----eec-------CCCCceEEEEEec
Q 016868 89 KKAPGGAPANVAVGIARLGGSSAF-IGKVGADEFGYMLADILKENNVNGAGM-----RFD-------PGARTALAFVTLR 155 (381)
Q Consensus 89 ~~~~GG~~~NvA~~la~LG~~v~l-i~~vG~D~~g~~i~~~l~~~gi~~~~v-----~~~-------~~~~t~~~~~~~~ 155 (381)
..+.||.+..+|..++++|.++.+ .+..- ++...+.|...+|-.-.+ ... .+.+....+++-.
T Consensus 87 ~~rmGGnAgimAn~la~lg~~~Vi~~~~~l----sk~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~IfEy 162 (453)
T PRK14039 87 EIRMGGNAGIMANVLSELGASRVVPNVAVP----SKTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPIHFVFDF 162 (453)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEcCCCC----CHHHHHhcCCCCEEeccccccccccCccccccccCCCCCceEEEEe
Confidence 578999999999999999999654 33222 233444442222211100 000 0112333333333
Q ss_pred CCCCc--------------eEEE-ecCCCccccCChhccc---hhhcCCccEEEEccccccCch------hHHHHH---H
Q 016868 156 SDGER--------------EFMF-YRNPSADMLLQEAELD---LSLITKAKIFHYGSISLITEP------CKSAHI---A 208 (381)
Q Consensus 156 ~~g~~--------------~~~~-~~~~~~~~~~~~~~l~---~~~i~~~~~~~~~~~~~~~~~------~~~~~~---~ 208 (381)
+.|++ +|+. .+..+.... ..+++. .+...++|.++++|+.++.+. -.+... +
T Consensus 163 ~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~-i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~~ 241 (453)
T PRK14039 163 REGETFSLYGTRIRAPRENRFIATFDHLNFRLF-INPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKLEDSLA 241 (453)
T ss_pred CCCCEEecCCccEecCCCCeEEEecCCCCccce-ecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHHHHHHH
Confidence 33332 2222 211111111 122222 123347899999999776331 122222 3
Q ss_pred HHHHH--HHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCC--------ChH---HHHHH
Q 016868 209 AAKAA--KDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDP--------YDD---AVVYK 275 (381)
Q Consensus 209 ~l~~a--~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~--------~~~---~~~~~ 275 (381)
.++.. +..++++-+.... +.+.+-....+..+++++|.+-+|+.|+..+...-.. +.+ +++..
T Consensus 242 ~i~~l~~~~~~i~iH~E~As----~~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~~ 317 (453)
T PRK14039 242 QLKWWKSKNEKLRIHAELGH----FASKEIANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAIGEAACQ 317 (453)
T ss_pred HHHHHHhcCCCceEEEEecC----cccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHHHHHHHH
Confidence 33333 2345788888764 3456667777878999999999999999988765221 111 33344
Q ss_pred HH-hcCCCEEEEEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHH
Q 016868 276 LF-HANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGA 354 (381)
Q Consensus 276 l~-~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa 354 (381)
|+ +.|++.++|..- +-+++-.. . |. -+.+ +.+ +||.+|+.+||
T Consensus 318 l~~~~~le~l~vHT~--~y~l~i~~-------~-----~~--------------~~~~-------~~~-~aL~fg~~~Aa 361 (453)
T PRK14039 318 LASESGLQRLIIHTR--EFVLCVSK-------P-----DV--------------KMAK-------KKI-EAMEFGLKCAG 361 (453)
T ss_pred HHHHcCCCEEEEEec--ceEEEEec-------C-----CC--------------CccH-------HHH-HHHHHHHHHHH
Confidence 44 468877666432 21111111 0 00 1112 226 99999998888
Q ss_pred HHhhhcCCCCCCCCHHHHH
Q 016868 355 LTVMERGAIPALPTREAVL 373 (381)
Q Consensus 355 ~~~~~~G~~~~~~~~~~v~ 373 (381)
..... | .+.++++++
T Consensus 362 ~~A~~-G---~i~~~~~~~ 376 (453)
T PRK14039 362 VYAAS-G---SLDGREFVE 376 (453)
T ss_pred HHHhc-C---CCCChHHHH
Confidence 77654 4 345677776
No 83
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=97.99 E-value=0.0013 Score=58.64 Aligned_cols=146 Identities=18% Similarity=0.096 Sum_probs=87.2
Q ss_pred hhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHh--hhCCEEecCHHHHh
Q 016868 182 SLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIW--ETADIIKISEEEIS 259 (381)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l--~~~dvl~~N~~E~~ 259 (381)
+..+.++.+++.--. +++...+.+..+.+.+++.++|+++||..-.. .....+...+++ .++++++.|..|..
T Consensus 45 e~~~~a~al~iNiGT-l~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGa----s~~R~~~~~~LL~~~~~~vIrGN~sEI~ 119 (246)
T PF02110_consen 45 EFASIADALVINIGT-LTDERIEAMKKAAKAANELGIPVVLDPVGVGA----SKFRTEFALELLNNYKPTVIRGNASEIA 119 (246)
T ss_dssp HHHHCTSEEEEESTT-SSHHHHHHHHHHHHHHHHTT--EEEE-TTBTT----BHHHHHHHHHHHCHS--SEEEEEHHHHH
T ss_pred HHHHHcCEEEEECCC-CCHhHHHHHHHHHHHHHHcCCCEEEeCcccCC----cHHHHHHHHHHHHhCCCcEEEeCHHHHH
Confidence 444556666554222 23445677788899999999999999964322 234455666777 47999999999999
Q ss_pred hccCCCCC---------Ch--HHHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHH
Q 016868 260 FLTQGEDP---------YD--DAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQ 328 (381)
Q Consensus 260 ~l~~~~~~---------~~--~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~ 328 (381)
.|.+.... +. .+.++.+.++.- .+|+-.|+.-. +.++.+.+.++--.--.-.-||.|+...+-+.+.
T Consensus 120 aLag~~~~~kGVDs~~~~~~~~~~a~~lA~k~~-~vVvvTG~~D~-Isdg~~~~~i~nG~~~l~~itGtGC~lgaliaaf 197 (246)
T PF02110_consen 120 ALAGEDSKAKGVDSGDSDEDAIEAAKQLAQKYN-CVVVVTGEVDY-ISDGNRVYRIPNGSPLLSKITGTGCMLGALIAAF 197 (246)
T ss_dssp HHHTCCCCSCSSSSSCGSHHHHHHHHHHHHHTT-SEEEEESSSEE-EEESSCEEEECSSSGGGGGSTTHHHHHHHHHHHH
T ss_pred HHhCcCCCCCCcCcCCcchHHHHHHHHHHHhcC-CEEEEecCCcE-EECCCeEEEeCCCChHhcceeccchHHHHHHHHH
Confidence 99876431 11 244566655433 35555565543 3444455554433323445599999987777766
Q ss_pred HHcCCc
Q 016868 329 LSTDFS 334 (381)
Q Consensus 329 l~~g~~ 334 (381)
+....+
T Consensus 198 ~av~~d 203 (246)
T PF02110_consen 198 LAVAED 203 (246)
T ss_dssp HCCCSS
T ss_pred Hhcccc
Confidence 666555
No 84
>PRK10565 putative carbohydrate kinase; Provisional
Probab=97.87 E-value=0.00063 Score=67.72 Aligned_cols=145 Identities=12% Similarity=0.009 Sum_probs=88.0
Q ss_pred cCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHH--hhhCCEEecCHHHHhhc
Q 016868 184 ITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSI--WETADIIKISEEEISFL 261 (381)
Q Consensus 184 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~--l~~~dvl~~N~~E~~~l 261 (381)
++.++.+.++.-...++ ....+++.+++.+.++++|+.. ...+... .....||+||..|+..|
T Consensus 318 ~~~~~a~viGpGlg~~~----~~~~~~~~~~~~~~P~VLDAda-----------L~ll~~~~~~~~~~VLTPh~gE~~rL 382 (508)
T PRK10565 318 LEWADVVVIGPGLGQQE----WGKKALQKVENFRKPMLWDADA-----------LNLLAINPDKRHNRVITPHPGEAARL 382 (508)
T ss_pred hhcCCEEEEeCCCCCCH----HHHHHHHHHHhcCCCEEEEchH-----------HHHHhhCccccCCeEECCCHHHHHHH
Confidence 45677777764322222 2234456667778999999842 1111110 11246999999999999
Q ss_pred cCCCCCC----hHHHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCcccc
Q 016868 262 TQGEDPY----DDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQ 337 (381)
Q Consensus 262 ~~~~~~~----~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~ 337 (381)
++..... ..+.++.+.+..-..|++ .|..- ++.+.++..++....-...-+.|.||+++|.+.+-+.++.+
T Consensus 383 ~~~~~~~v~~~~~~~a~~~a~~~~~~vvl-KG~~~-iI~~~~~~~~~~~~G~~~ma~~GsGDvLaGiIaalla~g~~--- 457 (508)
T PRK10565 383 LGCSVAEIESDRLLSARRLVKRYGGVVVL-KGAGT-VIAAEPDALAIIDVGNAGMASGGMGDVLSGIIGALLGQKLS--- 457 (508)
T ss_pred hCCChhhhhhhHHHHHHHHHHHhCCEEEE-eCCCc-EEEcCCceEEEECCCCCCCCCCChHHHHHHHHHHHHHcCCC---
Confidence 9854322 123445555543334444 55433 45554334444443345566799999999988888888888
Q ss_pred chHHHHHHHHHHHHH
Q 016868 338 KEDQLRDALRFANAC 352 (381)
Q Consensus 338 ~~~~l~~al~~A~~~ 352 (381)
+.+|+..|+..
T Consensus 458 ----~~~Aa~~a~~l 468 (508)
T PRK10565 458 ----PYDAACAGCVA 468 (508)
T ss_pred ----HHHHHHHHHHH
Confidence 77888777644
No 85
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=97.80 E-value=0.0017 Score=62.55 Aligned_cols=236 Identities=17% Similarity=0.186 Sum_probs=127.0
Q ss_pred cccCCChHHHHHHHHHH-cCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeeec-----------CCCCceEEEEEecC
Q 016868 89 KKAPGGAPANVAVGIAR-LGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFD-----------PGARTALAFVTLRS 156 (381)
Q Consensus 89 ~~~~GG~~~NvA~~la~-LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~-----------~~~~t~~~~~~~~~ 156 (381)
..+.||.+..+|..++. .|.+| +..++.. .+.-.+.+...+|-.-.+.-. .+.+.-+-+++-.+
T Consensus 106 ~~rmGGnAgimAn~la~~~g~~V--ia~~~~l--sk~qa~lf~~~~I~~p~~~~~~l~l~~p~e~~~~~~d~IH~I~Ey~ 181 (453)
T PRK14038 106 ELRMGGQVGIMANLLGGVYGVPV--IAHVPQL--SKLQASLFLDGPIYVPTFEGGELKLVHPREFVGDEENCIHYIYEFP 181 (453)
T ss_pred eEEeCChHHHHHHHHHhhcCCce--EEECCCc--chhhHhhccCCCEEeccccCCcceeccchhcccCCCCccEEEEEeC
Confidence 47899999999999984 56776 6666632 222222222222211000000 01123333343334
Q ss_pred CCCc----------eEEEecC-CCccccCChhccc---hhhcCCccEEEEccccccCchhHHH-H---HHHHHHHHHCCC
Q 016868 157 DGER----------EFMFYRN-PSADMLLQEAELD---LSLITKAKIFHYGSISLITEPCKSA-H---IAAAKAAKDAGV 218 (381)
Q Consensus 157 ~g~~----------~~~~~~~-~~~~~~~~~~~l~---~~~i~~~~~~~~~~~~~~~~~~~~~-~---~~~l~~a~~~g~ 218 (381)
.|++ +|+...+ .+.... ..+++. .+...+.|.++++|+..+.+...+. . .+.++..+..++
T Consensus 182 ~G~~~~~~~aPRaNRfI~s~D~~N~~l~-~~eef~~~l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i 260 (453)
T PRK14038 182 RGFRVFDFEAPRENRFIGAADDYNPNLY-IRPEFRERFEEIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGI 260 (453)
T ss_pred CCCEEeeeEcCCCceEEEecCCCCccee-ecHHHHHHHHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCc
Confidence 4442 3333222 111111 122222 1344679999999998765433222 2 222333344578
Q ss_pred eEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCC-------------ChH---HHHHHHHh-cCC
Q 016868 219 VLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDP-------------YDD---AVVYKLFH-ANL 281 (381)
Q Consensus 219 ~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~-------------~~~---~~~~~l~~-~g~ 281 (381)
++-+..... .+ ...+..+..+++.+|-+-+|+.|+..+...-.. ... +++..|++ .|+
T Consensus 261 ~iH~EfAs~----~d-~~~r~~i~~ilp~vDSlGmNE~ELa~ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gl 335 (453)
T PRK14038 261 PAHLEFAFT----PD-ETVREEILGLLGKFYSVGLNEVELASIMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGV 335 (453)
T ss_pred eEEEEeecc----ch-HHHHHHHHhhCccccccccCHHHHHHHHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCC
Confidence 888887632 22 345666667999999999999999988741111 122 33345543 677
Q ss_pred CEEEEEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHHHHhhhcC
Q 016868 282 KLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRFANACGALTVMERG 361 (381)
Q Consensus 282 ~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G 361 (381)
+.+.|.. .+-+++-.+. ++.. +++||.+|+.+||.... .|
T Consensus 336 eri~vHT--~~y~l~i~~~------------------------------~~~~-------~~~aL~f~~~~AaarA~-~G 375 (453)
T PRK14038 336 KRIHFHT--YGYYLALTKY------------------------------RGEH-------VRDALLFAALAAAAKAM-LG 375 (453)
T ss_pred CEEEEEe--cceeEEEecC------------------------------CHHH-------HHHHHHHHHHHHHHHHH-cC
Confidence 7655532 1222211110 3334 99999999999998875 56
Q ss_pred CCCCCCCHHHHHHHHh
Q 016868 362 AIPALPTREAVLNAIH 377 (381)
Q Consensus 362 ~~~~~~~~~~v~~~l~ 377 (381)
. +.++++++.-++
T Consensus 376 ~---i~~~~d~~~~l~ 388 (453)
T PRK14038 376 N---IEKIDDVRKALD 388 (453)
T ss_pred C---CCCHHHHHHHhc
Confidence 4 357777776543
No 86
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=97.65 E-value=0.0012 Score=64.45 Aligned_cols=163 Identities=14% Similarity=0.197 Sum_probs=82.6
Q ss_pred cCCChHHHHHHHHHHcCC-ceEEEeecCCChHHHHHHHHHHHCCCCCCCe--------e----ecCCCCceEEEEEecCC
Q 016868 91 APGGAPANVAVGIARLGG-SSAFIGKVGADEFGYMLADILKENNVNGAGM--------R----FDPGARTALAFVTLRSD 157 (381)
Q Consensus 91 ~~GG~~~NvA~~la~LG~-~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v--------~----~~~~~~t~~~~~~~~~~ 157 (381)
+.||.+.-+|..|+.++. +|.+.+.++. +.+.+.| ..+|-+=.+ . ..++.+.-.-+++-.+.
T Consensus 93 r~GGnA~imAn~la~l~~~~Vil~~p~~s----k~~~~l~-~~~i~~P~v~~~~~~l~~~~~a~~~~~~~~iH~IlEy~~ 167 (444)
T PF04587_consen 93 RMGGNAGIMANRLANLEGCPVILYAPILS----KEQAELF-NDNIYVPVVENGELKLIHPREAFKEDDEDDIHLILEYKK 167 (444)
T ss_dssp EEESHHHHHHHHHCCTT-SEEEEE-SS------HHHHTTS-SSSEEEEEEETTEEEEEEGGGS-STT----EEEEEEE-T
T ss_pred ccCchHHHHHHHHHhCCCCEEEEecCcCC----HHHHHhc-ccCcccccccCCcccccCchhccccCCccceEEEEEcCC
Confidence 599999999999997754 5555554654 3444555 232210000 0 00112344444544444
Q ss_pred CC----------ceEEE-ecCCCccccCChhccc---hhhcCCccEEEEccccccCc-----hhH----HHHHHHHHHHH
Q 016868 158 GE----------REFMF-YRNPSADMLLQEAELD---LSLITKAKIFHYGSISLITE-----PCK----SAHIAAAKAAK 214 (381)
Q Consensus 158 g~----------~~~~~-~~~~~~~~~~~~~~l~---~~~i~~~~~~~~~~~~~~~~-----~~~----~~~~~~l~~a~ 214 (381)
|+ .+|+. .+..+.... ..+.+. .+...++|.++++|+.++.+ ..+ +...+.++..+
T Consensus 168 G~~~~~~~aPraNRfI~s~D~~N~~l~-~~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~ 246 (444)
T PF04587_consen 168 GEKWGDITAPRANRFIVSSDPYNPRLS-ILEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLK 246 (444)
T ss_dssp TEEETTEE-SS-EEEEEEE-SSGGGTS---HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH
T ss_pred CCeecceecCcCceEEEecCCCCcccc-chHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhcc
Confidence 43 23333 222222221 222222 13345699999999987663 112 22223334455
Q ss_pred -HCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccC
Q 016868 215 -DAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQ 263 (381)
Q Consensus 215 -~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~ 263 (381)
..+++|-+.... +.+.+-.+..+..+++++|.+-+|+.|+..++.
T Consensus 247 ~~~~~~iH~E~As----~~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~~ 292 (444)
T PF04587_consen 247 SNPDIPIHLELAS----FADEELRKEILEKILPHVDSLGMNEQELANLLS 292 (444)
T ss_dssp -HTT-EEEEE--------SSHHHHHHHHHHHGGGSSEEEEEHHHHHHHHH
T ss_pred CCCCCceEEEecc----ccCHHHHHHHHHHhhccccccccCHHHHHHHHH
Confidence 688999998864 345566777777899999999999999998754
No 87
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=97.59 E-value=0.0039 Score=55.91 Aligned_cols=167 Identities=13% Similarity=0.029 Sum_probs=98.4
Q ss_pred hhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHH---HhhhCCEEecCHHHH
Q 016868 182 SLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILS---IWETADIIKISEEEI 258 (381)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~---~l~~~dvl~~N~~E~ 258 (381)
+.++++|.+.++.-.-..+ ...++++...+...++++|-. .-..+.. .....-|++|+..|+
T Consensus 63 ~~~~~~~av~iGPGlg~~~----~~~~~~~~~~~~~~p~VlDAD-----------aL~~l~~~~~~~~~~~IlTPH~gE~ 127 (242)
T PF01256_consen 63 ELLEKADAVVIGPGLGRDE----ETEELLEELLESDKPLVLDAD-----------ALNLLAENPKKRNAPVILTPHPGEF 127 (242)
T ss_dssp HHHCH-SEEEE-TT-SSSH----HHHHHHHHHHHHCSTEEEECH-----------HHHCHHHCCCCSSSCEEEE-BHHHH
T ss_pred hhhccCCEEEeecCCCCch----hhHHHHHHHHhhcceEEEehH-----------HHHHHHhccccCCCCEEECCCHHHH
Confidence 4567889988875322222 122344445555778999973 1222222 234567899999999
Q ss_pred hhccCCCC---CChHHHHHHHHh-cCCCEEEEEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCc
Q 016868 259 SFLTQGED---PYDDAVVYKLFH-ANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFS 334 (381)
Q Consensus 259 ~~l~~~~~---~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~ 334 (381)
..|++... .+..+.++++.+ +++ +||-.|..-.+...+++.+..+. .-.-.-+-|.||.++|-+..-+.++.+
T Consensus 128 ~rL~~~~~~~~~~~~~~a~~~a~~~~~--~vvLKG~~t~I~~p~~~~~~n~~-gn~~la~gGsGDvLaGii~~llaq~~~ 204 (242)
T PF01256_consen 128 ARLLGKSVEIQEDRIEAAREFAKEYGA--VVVLKGAVTIIASPGGRVYVNPT-GNPGLATGGSGDVLAGIIAGLLAQGYD 204 (242)
T ss_dssp HHHHTTTCHHCCSHHHHHHHHHHHHTS--EEEEESTSSEEEEETSEEEEE-----GGGSSTTHHHHHHHHHHHHHHHTSS
T ss_pred HHHhCCcccchhhHHHHHHHHHhhcCc--EEEEeCCCcEEEecCcceeEeCC-CCCCCCCCCcccHHHHHHHHHHHccCC
Confidence 99999876 233455666654 443 56666766655554555444433 335667899999999888888899998
Q ss_pred cccchHHHHHHHHHHHHHHHHH----hhhcCCCCCCCCHHHHHHHH
Q 016868 335 LLQKEDQLRDALRFANACGALT----VMERGAIPALPTREAVLNAI 376 (381)
Q Consensus 335 ~~~~~~~l~~al~~A~~~Aa~~----~~~~G~~~~~~~~~~v~~~l 376 (381)
+.+|+..|+..=+.+ .+..|. + ....+|-+.+
T Consensus 205 -------~~~Aa~~av~lHg~Ag~~~~~~~~~--~-~~a~dli~~i 240 (242)
T PF01256_consen 205 -------PFEAACLAVYLHGRAGDLAAEKYGR--G-MLASDLIDNI 240 (242)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHCTTCSS--C---HHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhCCC--c-CcHHHHHHhc
Confidence 888888776543333 333333 2 3566665554
No 88
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=97.38 E-value=0.056 Score=48.00 Aligned_cols=158 Identities=16% Similarity=0.053 Sum_probs=92.0
Q ss_pred CccccCChhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhh-
Q 016868 169 SADMLLQEAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWET- 247 (381)
Q Consensus 169 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~- 247 (381)
+.-|...++++. +..+-++.+.+.--+ +++...+.+..+.+.+++.+.|+++||..... .....+...++|.+
T Consensus 39 SP~Ma~~~eE~~-e~~kia~AL~INIGT-L~~~~~~~m~~A~~~An~~~~PvvLDPVgvgA----t~~R~~~~~~LL~~~ 112 (265)
T COG2145 39 SPVMADAPEEVE-EFAKIADALLINIGT-LSAERIQAMRAAIKAANESGKPVVLDPVGVGA----TKFRTKFALELLAEV 112 (265)
T ss_pred CchhccCHHHHH-HHHHhccceEEeecc-CChHHHHHHHHHHHHHHhcCCCEEecCccCCc----hHHHHHHHHHHHHhc
Confidence 333444454443 344444555443222 24555678888899999999999999954322 22334555566654
Q ss_pred -CCEEecCHHHHhhccCCCCC--------ChH---HHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEccccccccCCC
Q 016868 248 -ADIIKISEEEISFLTQGEDP--------YDD---AVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDAT 315 (381)
Q Consensus 248 -~dvl~~N~~E~~~l~~~~~~--------~~~---~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdtt 315 (381)
.++++.|..|...|.|.... ... ++++.+.+. ...+++-.|+.-. +.++.+.+.+.--.--.-.-|
T Consensus 113 ~~~~IrGN~sEI~~Lag~~~~~kGVDa~~~~~~~~~~a~~~A~~-~~~vvvvTG~vD~-Isdg~~~~~i~nG~pll~~It 190 (265)
T COG2145 113 KPAAIRGNASEIAALAGEAGGGKGVDAGDGAADAIEAAKKAAQK-YGTVVVVTGEVDY-ISDGTRVVVIHNGSPLLGKIT 190 (265)
T ss_pred CCcEEeccHHHHHHHhcccccccccccccchhhHHHHHHHHHHH-hCcEEEEECCeeE-EEcCCeEEEEECCCcHHhhhh
Confidence 69999999999999864321 112 223333332 2246666665543 444444444433222234559
Q ss_pred CccHHHHHHHHHHHHcCCc
Q 016868 316 GAGDAFVAGILSQLSTDFS 334 (381)
Q Consensus 316 GAGDaF~ag~l~~l~~g~~ 334 (381)
|+|+...|...+.+....+
T Consensus 191 GtGCllgav~aaF~av~~d 209 (265)
T COG2145 191 GTGCLLGAVVAAFLAVEKD 209 (265)
T ss_pred ccccHHHHHHHHHHhcCCC
Confidence 9999887776666665554
No 89
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.0036 Score=55.06 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=91.1
Q ss_pred hhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhh
Q 016868 181 LSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISF 260 (381)
Q Consensus 181 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~ 260 (381)
+..+.+-..++++.-.--++.....+..+++.++++++|+++|... +|--.+.....+.. . ..-|++||.-|++.
T Consensus 96 ~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDG---L~Lv~q~~e~l~~~-~-~~viLTPNvvEFkR 170 (306)
T KOG3974|consen 96 EKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADG---LWLVEQLPERLIGG-Y-PKVILTPNVVEFKR 170 (306)
T ss_pred HHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCc---eEehhhchhhhhcc-C-ceeeeCCcHHHHHH
Confidence 3467777888887543345556677789999999999999999852 44322111111111 1 13678999999999
Q ss_pred ccCCC--CCChHHHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHH
Q 016868 261 LTQGE--DPYDDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQL 329 (381)
Q Consensus 261 l~~~~--~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l 329 (381)
|++.. ..+.......|.+.-....+|-.|+.-.++..+.+....+. +-...-.-|=||.++|.+..-+
T Consensus 171 Lcd~~l~~~d~~~~~~~L~~~l~nv~vvqKG~~D~ils~~~ev~~~s~-eGs~kRcGGQGDiLaGsla~fl 240 (306)
T KOG3974|consen 171 LCDAELDKVDSHSQMQHLAAELMNVTVVQKGESDKILSPDSEVRVCST-EGSLKRCGGQGDILAGSLATFL 240 (306)
T ss_pred HHHHhhccccchHHHHHHHHHhcCeEEEEecCCceeeCCCCeeEEccC-CCCccccCCCcchhhhHHHHHH
Confidence 99873 33333444555543345678888888776655555544443 3334455788999988776444
No 90
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=97.16 E-value=0.0034 Score=60.97 Aligned_cols=165 Identities=12% Similarity=0.153 Sum_probs=94.5
Q ss_pred cccCCChHHHHHHHHHHcCC-ceEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCC--------
Q 016868 89 KKAPGGAPANVAVGIARLGG-SSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGE-------- 159 (381)
Q Consensus 89 ~~~~GG~~~NvA~~la~LG~-~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~-------- 159 (381)
..+.||.+.-+|..++++|. +|.+.+.+... .....+...+|-.-... ....+.-+-+++-.+.|+
T Consensus 102 ~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k----~~~~L~~d~~i~~p~~e-~~~~~d~IHlIlEy~~G~~~~~~~aP 176 (445)
T cd01938 102 ELRMGGNAGLMANRLAGEGDLKVLLGVPQSSK----LQAELFLDGPIVVPTFE-NLIEEDEIHLILEYPRGESWGDFVAP 176 (445)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEecCCCcH----HHHHhCCCCCeeecccc-cCCCCCccEEEEEcCCCCEecceEcC
Confidence 57899999999999999999 88888776543 22222222122111000 001223344444344444
Q ss_pred --ceEEEecCCCccccCChhccchhhcCC-ccEEEEccccccCchh--HHHHHHHHHHHH------HCCCeEEEeCCCCC
Q 016868 160 --REFMFYRNPSADMLLQEAELDLSLITK-AKIFHYGSISLITEPC--KSAHIAAAKAAK------DAGVVLSYDPNLRL 228 (381)
Q Consensus 160 --~~~~~~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~--~~~~~~~l~~a~------~~g~~v~~D~~~~~ 228 (381)
.+|+...+..-. ....+++..+..+. .|.++++|+.++.+.. .....+.++.++ +..+++-|....
T Consensus 177 raNRfI~~~d~~n~-l~~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As-- 253 (445)
T cd01938 177 RANRFIFHDDDNNP-MLMREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELAS-- 253 (445)
T ss_pred CCCeEEEecCCcch-hhhhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEecc--
Confidence 233333222111 22222222344444 8999999998765532 222333333333 234777777753
Q ss_pred CCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccC
Q 016868 229 PLWPSADKAREGILSIWETADIIKISEEEISFLTQ 263 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~ 263 (381)
+.+.+-..+.+..+++++|-+-+|+.|+..++.
T Consensus 254 --~~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~~ 286 (445)
T cd01938 254 --TVDEELREEILHEVVPYVDSLGLNEQELANLLQ 286 (445)
T ss_pred --cccHHHHHHHHHHhcccccccccCHHHHHHHHH
Confidence 345666777777899999999999999998873
No 91
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.038 Score=50.56 Aligned_cols=174 Identities=14% Similarity=0.045 Sum_probs=90.5
Q ss_pred hcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh-hCCEEecCHHHHhhc
Q 016868 183 LITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWE-TADIIKISEEEISFL 261 (381)
Q Consensus 183 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~-~~dvl~~N~~E~~~l 261 (381)
..+++|.+.++.-.-.++...+...++++... .++++|...- ........+.. .-.|++|+..|++.|
T Consensus 98 ~~~~~~avviGpGlG~~~~~~~~~~~~l~~~~---~p~ViDADaL--------~~la~~~~~~~~~~~VlTPH~gEf~rL 166 (284)
T COG0063 98 LVERADAVVIGPGLGRDAEGQEALKELLSSDL---KPLVLDADAL--------NLLAELPDLLDERKVVLTPHPGEFARL 166 (284)
T ss_pred hhccCCEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEeCcHH--------HHHHhCcccccCCcEEECCCHHHHHHh
Confidence 34678888887432233333344444433322 8999998410 00011111221 237889999999999
Q ss_pred cCCCCCC----hHHHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEccccccccCCCCccHHHHHHHHHHHHcCCcccc
Q 016868 262 TQGEDPY----DDAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLKVEAVDATGAGDAFVAGILSQLSTDFSLLQ 337 (381)
Q Consensus 262 ~~~~~~~----~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvdttGAGDaF~ag~l~~l~~g~~~~~ 337 (381)
++...++ ..+.++.+.++ ...+||=.|..-.+ .+.+...++...--.-.=+=|.||++++-+.+-+.++ . .
T Consensus 167 ~g~~~~~~~~~r~~~a~~~a~~-~~~vvVLKG~~tvI-~~~~g~~~~n~~G~~~ma~GGtGDvLaGii~alLAq~-~-~- 241 (284)
T COG0063 167 LGTEVDEIEVDRLEAARELAAK-YGAVVVLKGAVTVI-ADPDGEVFVNPTGNPGMATGGTGDVLAGIIGALLAQG-P-A- 241 (284)
T ss_pred cCCcccccccchHHHHHHHHHH-cCCEEEEeCCCCEE-EcCCCcEEEcCCCCHHhccCcchHHHHHHHHHHHhCC-C-C-
Confidence 9854432 23455555543 33466666755444 4333233333222233445689999877666655666 3 0
Q ss_pred chHHHHHHHHHHHHH---HH-HHhhhcCCCCCCCCHHHHHHHHhCC
Q 016868 338 KEDQLRDALRFANAC---GA-LTVMERGAIPALPTREAVLNAIHAP 379 (381)
Q Consensus 338 ~~~~l~~al~~A~~~---Aa-~~~~~~G~~~~~~~~~~v~~~l~~~ 379 (381)
+..+|+..|+.. |+ +.-...| -.+..++-+.+.++
T Consensus 242 ---~~~~Aa~~g~~~h~~ag~la~~~~g----~~~a~Dl~~~ip~~ 280 (284)
T COG0063 242 ---DPLEAAAAGAWLHGRAGELAAKKHG----GLTATDLIEAIPRA 280 (284)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHhhccC----CCCHHHHHHHHHHH
Confidence 255555554433 22 2233333 24666666655443
No 92
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=92.83 E-value=8.5 Score=36.49 Aligned_cols=81 Identities=11% Similarity=0.029 Sum_probs=53.9
Q ss_pred hhcCCccEEEEccccccCch----h-----HHHHHHHHHHHHH-CCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEE
Q 016868 182 SLITKAKIFHYGSISLITEP----C-----KSAHIAAAKAAKD-AGVVLSYDPNLRLPLWPSADKAREGILSIWETADII 251 (381)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~----~-----~~~~~~~l~~a~~-~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl 251 (381)
+.....|...++|+..+.+- + -+...+-++..++ .++++=+..... .+....+..+..+++.++-+
T Consensus 221 ~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~----~d~~irk~i~~~il~~v~Sv 296 (466)
T COG4809 221 EIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASI----QDRKIRKEILTNILSIVYSV 296 (466)
T ss_pred HHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEeccc----ccHHHHHHHHHHHHhhhhhc
Confidence 34456788888888653211 1 1222333455555 678888887542 34556667777799999999
Q ss_pred ecCHHHHhhccCCCC
Q 016868 252 KISEEEISFLTQGED 266 (381)
Q Consensus 252 ~~N~~E~~~l~~~~~ 266 (381)
-+|+.|+..+...-.
T Consensus 297 GldE~ElA~vl~vlG 311 (466)
T COG4809 297 GLDEVELANVLNVLG 311 (466)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999998776543
No 93
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=91.39 E-value=0.46 Score=43.93 Aligned_cols=162 Identities=14% Similarity=0.196 Sum_probs=86.5
Q ss_pred CccccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEec
Q 016868 87 AFKKAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYR 166 (381)
Q Consensus 87 ~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~ 166 (381)
++.++.||++.-.|.-...-| .+.++|..|.-...-.+-.. +.+.+-.+.. .-+.+++-.+.|+.- ..|-
T Consensus 137 R~~~~mGGNA~LMA~R~~~~~-~~~LlG~~~~R~~~~L~P~~-----~R~~~~~I~~---DdiHlILEYK~Gd~~-G~~V 206 (478)
T KOG4184|consen 137 RINWYMGGNAPLMAVRFFMEG-AQVLLGAHMSRKLRPLLPKE-----IRLAGDEIPN---DDIHLILEYKAGDKW-GPYV 206 (478)
T ss_pred hhhhhccCCchHHHHHHHhcc-ceeeecccccchhccccchh-----hhcccCcCcC---CceEEEEEeccCCcc-cccc
Confidence 456889999988888887776 78899998875322221111 2221111111 113333333444421 0011
Q ss_pred CCCcccc------CCh-----hccchhhcC--CccEEEEccccccCchhHHHHHHHHHHHHH------CCCeEEEeCCCC
Q 016868 167 NPSADML------LQE-----AELDLSLIT--KAKIFHYGSISLITEPCKSAHIAAAKAAKD------AGVVLSYDPNLR 227 (381)
Q Consensus 167 ~~~~~~~------~~~-----~~l~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~------~g~~v~~D~~~~ 227 (381)
.+.++.. ..+ +.+ .+.++ +.|+++++|..++.-...+.-.+-++..++ .|+++=++...
T Consensus 207 AP~anR~I~~~D~~n~~m~~~E~f-~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS- 284 (478)
T KOG4184|consen 207 APRANRYILHNDRNNPHMRAVEQF-TDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELAS- 284 (478)
T ss_pred cccccceeeecCCCChHHHHHHHH-HHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhH-
Confidence 1111111 111 111 12232 468999999877655444433333333332 35555555431
Q ss_pred CCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccC
Q 016868 228 LPLWPSADKAREGILSIWETADIIKISEEEISFLTQ 263 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~ 263 (381)
+.+.+-..+.+..++|++|-+-+|+.|+..|+.
T Consensus 285 ---~~~~~l~~~i~h~VlPyVdSLGlNEQEL~fL~q 317 (478)
T KOG4184|consen 285 ---MTNRELMSSIVHQVLPYVDSLGLNEQELLFLTQ 317 (478)
T ss_pred ---HHHHHHHHHHHHHhhhhccccCCCHHHHHHHHH
Confidence 223344556666789999999999999998874
No 94
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=89.14 E-value=3.5 Score=36.21 Aligned_cols=75 Identities=9% Similarity=0.033 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEe-----cCHHHHhhccCCCCCChHHHHHHHH
Q 016868 203 KSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIK-----ISEEEISFLTQGEDPYDDAVVYKLF 277 (381)
Q Consensus 203 ~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~-----~N~~E~~~l~~~~~~~~~~~~~~l~ 277 (381)
.+.+.++++.+++.|+.+.+|.+...+ .+.+.++++.+|.+. ++.+.-+.++|......-+.++.+.
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~--------~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~ 124 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAP--------ASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLV 124 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC--------HHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566789999999999999999975432 344556677777664 4666677888866543334556677
Q ss_pred hcCCCEEE
Q 016868 278 HANLKLLL 285 (381)
Q Consensus 278 ~~g~~~vv 285 (381)
+.|....+
T Consensus 125 ~~g~~v~i 132 (213)
T PRK10076 125 SEGVNVIP 132 (213)
T ss_pred hCCCcEEE
Confidence 77765433
No 95
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=77.92 E-value=21 Score=32.37 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=58.3
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEe-----cCHHHHhh
Q 016868 186 KAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIK-----ISEEEISF 260 (381)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~-----~N~~E~~~ 260 (381)
..+.+.+++-- .-...+.+.++++.+|+.|+.+.+|.+.... ++.+.++++..|.+. ++.+-.+.
T Consensus 83 ~~~gvt~SGGE--P~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~--------~~~~~~l~~~~D~v~~DlK~~~~~~y~~ 152 (260)
T COG1180 83 SGGGVTFSGGE--PTLQAEFALDLLRAAKERGLHVALDTNGFLP--------PEALEELLPLLDAVLLDLKAFDDELYRK 152 (260)
T ss_pred CCCEEEEECCc--chhhHHHHHHHHHHHHHCCCcEEEEcCCCCC--------HHHHHHHHhhcCeEEEeeccCChHHHHH
Confidence 45656555421 1235678889999999999999999975433 223345666666654 34555888
Q ss_pred ccCCCCCChHHHHHHHHhcCCCEEE
Q 016868 261 LTQGEDPYDDAVVYKLFHANLKLLL 285 (381)
Q Consensus 261 l~~~~~~~~~~~~~~l~~~g~~~vv 285 (381)
+++......-+.++.+.+.|+...+
T Consensus 153 ~tg~~~~~vl~~~~~l~~~g~~ve~ 177 (260)
T COG1180 153 LTGADNEPVLENLELLADLGVHVEI 177 (260)
T ss_pred HhCCCcHHHHHHHHHHHcCCCeEEE
Confidence 8887774444556667676765443
No 96
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=75.53 E-value=28 Score=29.32 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=58.3
Q ss_pred CccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhh---cc
Q 016868 186 KAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISF---LT 262 (381)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~---l~ 262 (381)
+++.+-..|.. .+.+.+..+-+..++.|+.|+.||.+ ..+..+..+.+.+|.+-..++...++.. -.
T Consensus 22 d~~~I~T~Gs~----i~~~~i~~i~~~~~~rgVIIfTDpD~------~GekIRk~i~~~vp~~khafi~~~~a~~~~~~i 91 (174)
T TIGR00334 22 DVDVIETNGSA----LKDETINLIKKAQKKQGVIILTDPDF------PGEKIRKKIEQHLPGYENCFIPKHLAKPNKKKI 91 (174)
T ss_pred CceEEEECCCc----cCHHHHHHHHHHhhcCCEEEEeCCCC------chHHHHHHHHHHCCCCeEEeeeHHhcCcCCCCc
Confidence 47788777753 24455666666677789999999964 3567888888888989999999998752 24
Q ss_pred CCCCCChHHHHHHHHh
Q 016868 263 QGEDPYDDAVVYKLFH 278 (381)
Q Consensus 263 ~~~~~~~~~~~~~l~~ 278 (381)
|.+..++++..+.|..
T Consensus 92 GVE~As~e~I~~AL~~ 107 (174)
T TIGR00334 92 GVEEASVEAIIAALEN 107 (174)
T ss_pred ccCCCCHHHHHHHHHH
Confidence 5555555555566543
No 97
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=54.35 E-value=1.4e+02 Score=26.98 Aligned_cols=97 Identities=14% Similarity=0.243 Sum_probs=52.4
Q ss_pred CCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCccEEEEccccc------cCchhHHHHHHHHH-HHHHCC
Q 016868 145 ARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAKIFHYGSISL------ITEPCKSAHIAAAK-AAKDAG 217 (381)
Q Consensus 145 ~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~l~-~a~~~g 217 (381)
.+.|..+...=.+|+.++++..+ ..-....+.+++-.-++.+++.++|-.. ......+...+-++ .+.+.+
T Consensus 162 skLGyVl~v~V~dg~~~i~faSD--vqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~ 239 (304)
T COG2248 162 SKLGYVLMVAVTDGKSSIVFASD--VQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETN 239 (304)
T ss_pred cccceEEEEEEecCCeEEEEccc--ccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCc
Confidence 45565555544678777776422 2223444455443345788998887533 23333444443344 444556
Q ss_pred CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhC
Q 016868 218 VVLSYDPNLRLPLWPSADKAREGILSIWETA 248 (381)
Q Consensus 218 ~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (381)
..+++|-..-.. ..+++.++++...+
T Consensus 240 ~~lViDHHllRD-----~~y~e~l~~l~~~~ 265 (304)
T COG2248 240 ATLVIDHHLLRD-----KNYREFLEELFERA 265 (304)
T ss_pred ceEEEeehhhcC-----CCHHHHHHHHHhhH
Confidence 889999853211 24566666655543
No 98
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=54.10 E-value=31 Score=24.56 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=33.5
Q ss_pred HHHHHHHHHHcCCceEEEeecCC------ChHHHHHHHHHHHCCCCCC
Q 016868 96 PANVAVGIARLGGSSAFIGKVGA------DEFGYMLADILKENNVNGA 137 (381)
Q Consensus 96 ~~NvA~~la~LG~~v~li~~vG~------D~~g~~i~~~l~~~gi~~~ 137 (381)
|.=.|..|+++|.++.++..-.. ....+.+.+.|++.||++.
T Consensus 11 g~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 11 GIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp HHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 67789999999999999986542 2467888999999998743
No 99
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=52.54 E-value=19 Score=23.09 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=24.4
Q ss_pred ecCHHHHhhccCCCCCChHHHHHHHHhcCCCEEE
Q 016868 252 KISEEEISFLTQGEDPYDDAVVYKLFHANLKLLL 285 (381)
Q Consensus 252 ~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vv 285 (381)
+++.+|+..|+|...+ ...++.|.+.|+..++
T Consensus 2 fLT~~El~elTG~k~~--~~Q~~~L~~~Gi~~~~ 33 (47)
T PF13986_consen 2 FLTDEELQELTGYKRP--SKQIRWLRRNGIPFVV 33 (47)
T ss_pred CCCHHHHHHHHCCCCH--HHHHHHHHHCCCeeEE
Confidence 5789999999998765 4456788888876543
No 100
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=50.88 E-value=1.3e+02 Score=27.61 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEe-----cCHHHHhhccCCCCCChHHHHHHHH
Q 016868 203 KSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIK-----ISEEEISFLTQGEDPYDDAVVYKLF 277 (381)
Q Consensus 203 ~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~-----~N~~E~~~l~~~~~~~~~~~~~~l~ 277 (381)
++.+.++++.+++.|..+.++.+.... .+.+.++++..|++. .+.+....+.|......-+.++.+.
T Consensus 140 ~~~l~~l~~~~k~~g~~~~i~TnG~~~--------~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~~~~~vl~~i~~l~ 211 (295)
T TIGR02494 140 PEFALALLQACHERGIHTAVETSGFTP--------WETIEKVLPYVDLFLFDIKHLDDERHKEVTGVDNEPILENLEALA 211 (295)
T ss_pred HHHHHHHHHHHHHcCCcEeeeCCCCCC--------HHHHHHHHhhCCEEEEeeccCChHHHHHHhCCChHHHHHHHHHHH
Confidence 345568889999999989888875321 123445566677654 3555556666653222223445666
Q ss_pred hcCCCE
Q 016868 278 HANLKL 283 (381)
Q Consensus 278 ~~g~~~ 283 (381)
+.+.+.
T Consensus 212 ~~~~~~ 217 (295)
T TIGR02494 212 AAGKNV 217 (295)
T ss_pred hCCCcE
Confidence 666543
No 101
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=48.95 E-value=69 Score=28.87 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=63.6
Q ss_pred hhhcCCccEEEEcccccc-------C------chhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhh
Q 016868 181 LSLITKAKIFHYGSISLI-------T------EPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWET 247 (381)
Q Consensus 181 ~~~i~~~~~~~~~~~~~~-------~------~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~ 247 (381)
.+.++++++++.+|+.+. . -...+....+++.+.+.+.+|++=-+.+. ..+...+.+....+.
T Consensus 59 ~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp~----V~~~a~~~l~~~~p~ 134 (253)
T COG1922 59 REILNQADLILPDGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKPG----VAEQAAAKLRAKYPG 134 (253)
T ss_pred HHHHhhcCEEccCchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCHH----HHHHHHHHHHHHCCC
Confidence 367888999998887541 1 11256777888888888888877432111 134556666666776
Q ss_pred CCEEecCHHHHhhccCCCCCCh-HHHHHHHHhcCCCEEEEEecC
Q 016868 248 ADIIKISEEEISFLTQGEDPYD-DAVVYKLFHANLKLLLVTEGP 290 (381)
Q Consensus 248 ~dvl~~N~~E~~~l~~~~~~~~-~~~~~~l~~~g~~~vvvt~G~ 290 (381)
.+++-... |.-.+++ +.+++.+.+.+++.++|-+|.
T Consensus 135 l~ivg~h~-------GYf~~~e~~~i~~~I~~s~pdil~VgmG~ 171 (253)
T COG1922 135 LKIVGSHD-------GYFDPEEEEAIVERIAASGPDILLVGMGV 171 (253)
T ss_pred ceEEEecC-------CCCChhhHHHHHHHHHhcCCCEEEEeCCC
Confidence 67765543 2222222 356678888899999998885
No 102
>PRK15452 putative protease; Provisional
Probab=44.73 E-value=1.8e+02 Score=28.66 Aligned_cols=84 Identities=10% Similarity=-0.020 Sum_probs=47.0
Q ss_pred hhccchhhcCCccEEEEcccccc-----CchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh-hCC
Q 016868 176 EAELDLSLITKAKIFHYGSISLI-----TEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWE-TAD 249 (381)
Q Consensus 176 ~~~l~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~-~~d 249 (381)
.+.+...+-.++|.|++++-... .+...+.+.++++.++++|+++.+-.+.-.. -...+.+.+.+..+.. .+|
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~-e~el~~~~~~l~~l~~~gvD 91 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPH-NAKLKTFIRDLEPVIAMKPD 91 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCC-HHHHHHHHHHHHHHHhCCCC
Confidence 34444455678999999653111 1233466788899999999999887653221 0011223334444333 367
Q ss_pred EEe-cCHHHHhh
Q 016868 250 IIK-ISEEEISF 260 (381)
Q Consensus 250 vl~-~N~~E~~~ 260 (381)
-++ -|...+..
T Consensus 92 gvIV~d~G~l~~ 103 (443)
T PRK15452 92 ALIMSDPGLIMM 103 (443)
T ss_pred EEEEcCHHHHHH
Confidence 444 45554443
No 103
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=43.50 E-value=1.8e+02 Score=25.71 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEec-----CHHHHhhccCCCCCChHHHHHHHH
Q 016868 203 KSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKI-----SEEEISFLTQGEDPYDDAVVYKLF 277 (381)
Q Consensus 203 ~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~-----N~~E~~~l~~~~~~~~~~~~~~l~ 277 (381)
.+.+.++++.+++.|..+.++.+..... ..+.+..+++.+|.+.+ +++....++|......-+.++.+.
T Consensus 85 ~~~~~~l~~~~k~~g~~i~l~TNG~~~~------~~~~~~~ll~~~d~v~islk~~~~e~~~~~~g~~~~~~l~~i~~l~ 158 (246)
T PRK11145 85 AEFVRDWFRACKKEGIHTCLDTNGFVRR------YDPVIDELLDVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFARYLA 158 (246)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCc------chHHHHHHHHhCCEEEECCCcCChhhcccccCCChHHHHHHHHHHH
Confidence 4555688899999999999988653321 12344555667786554 333344555543221122335566
Q ss_pred hcCCCE
Q 016868 278 HANLKL 283 (381)
Q Consensus 278 ~~g~~~ 283 (381)
+.|.+.
T Consensus 159 ~~g~~v 164 (246)
T PRK11145 159 KRNQKT 164 (246)
T ss_pred hCCCcE
Confidence 666553
No 104
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=42.63 E-value=45 Score=24.80 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCC
Q 016868 93 GGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNG 136 (381)
Q Consensus 93 GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~ 136 (381)
+|.+...+..+...|.++.+++.+|.. ....|++.||.+
T Consensus 47 ~~~~~~~~~~l~~~~v~~vi~~~iG~~-----a~~~l~~~gI~v 85 (102)
T cd00562 47 GGEGKLAARLLALEGCDAVLVGGIGGP-----AAAKLEAAGIKP 85 (102)
T ss_pred CccchHHHHHHHHCCCcEEEEcccCcc-----HHHHHHHcCCEE
Confidence 467789999999999999999998876 556788889874
No 105
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=42.27 E-value=1.5e+02 Score=25.07 Aligned_cols=77 Identities=9% Similarity=0.002 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCC
Q 016868 203 KSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLK 282 (381)
Q Consensus 203 ~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~ 282 (381)
.+....+++.+.+.+.++++=-+. +. ..+...+.+..-.+...+.-.+ -.+ ...+.++.++.+.+.++.
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~-~~---v~~~~~~~l~~~yP~l~i~g~~-----g~f--~~~~~~~i~~~I~~s~~d 102 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGK-PD---VLQQLKVKLIKEYPKLKIVGAF-----GPL--EPEERKAALAKIARSGAG 102 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCC-HH---HHHHHHHHHHHHCCCCEEEEEC-----CCC--ChHHHHHHHHHHHHcCCC
Confidence 355567777777777666653221 00 1123344444445555554321 111 111123455666677777
Q ss_pred EEEEEecC
Q 016868 283 LLLVTEGP 290 (381)
Q Consensus 283 ~vvvt~G~ 290 (381)
.|+|-+|.
T Consensus 103 il~VglG~ 110 (177)
T TIGR00696 103 IVFVGLGC 110 (177)
T ss_pred EEEEEcCC
Confidence 77777774
No 106
>PHA00438 hypothetical protein
Probab=41.39 E-value=23 Score=25.25 Aligned_cols=18 Identities=39% Similarity=0.711 Sum_probs=15.5
Q ss_pred CCCCccHHHHHHHHHHHH
Q 016868 313 DATGAGDAFVAGILSQLS 330 (381)
Q Consensus 313 dttGAGDaF~ag~l~~l~ 330 (381)
-..|..++|.+||++|+-
T Consensus 45 R~~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 45 RQAGYSEAFIAGFLAGLQ 62 (81)
T ss_pred HHcCCcHHHHHHHHHHHH
Confidence 347999999999999984
No 107
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=37.66 E-value=3.3e+02 Score=26.74 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=18.0
Q ss_pred HHHHHHHHHHCCCeEEEeCCCC
Q 016868 206 HIAAAKAAKDAGVVLSYDPNLR 227 (381)
Q Consensus 206 ~~~~l~~a~~~g~~v~~D~~~~ 227 (381)
+.++.+.|+++|+++++|-...
T Consensus 166 i~~I~~iA~~~gi~livD~T~~ 187 (432)
T PRK06702 166 FKEFSDAAKELEVPFIVDNTLA 187 (432)
T ss_pred HHHHHHHHHHcCCEEEEECCCC
Confidence 4577788999999999998643
No 108
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=37.65 E-value=48 Score=25.14 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=26.5
Q ss_pred ccCCCCccHHHHHHHHHHHHcCCccccchHHHHHHHHH
Q 016868 311 AVDATGAGDAFVAGILSQLSTDFSLLQKEDQLRDALRF 348 (381)
Q Consensus 311 vvdttGAGDaF~ag~l~~l~~g~~~~~~~~~l~~al~~ 348 (381)
..|-.|-||..-|-++|+|++|.- +.+||++.
T Consensus 52 R~dkh~kGd~aEA~iAyAWLeg~i------t~eEavei 83 (120)
T PF11469_consen 52 RTDKHGKGDIAEALIAYAWLEGKI------TIEEAVEI 83 (120)
T ss_dssp CGGCCGHHHHHHHHHHHHHHTTSS-------HHHHHHH
T ss_pred cccccCccHHHHHHHHHHHHhccc------cHHHHHHH
Confidence 468899999999999999999964 37777764
No 109
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=36.82 E-value=29 Score=24.70 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=16.5
Q ss_pred cCCCCccHHHHHHHHHHHHc
Q 016868 312 VDATGAGDAFVAGILSQLST 331 (381)
Q Consensus 312 vdttGAGDaF~ag~l~~l~~ 331 (381)
....|..|+|.+||+.|+..
T Consensus 44 lr~~G~SE~~I~Gfl~Gl~~ 63 (77)
T PF10911_consen 44 LRKQGWSESYILGFLAGLQY 63 (77)
T ss_pred HHHccccHHHHHHHHHHHHH
Confidence 34569999999999999853
No 110
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=36.04 E-value=57 Score=25.76 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=35.8
Q ss_pred ccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCC
Q 016868 90 KAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNG 136 (381)
Q Consensus 90 ~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~ 136 (381)
....|.|.-++..|...|.++.+++.+|.. -.+.|++.||++
T Consensus 48 ~~~~g~G~~~a~~l~~~gvdvvi~~~iG~~-----a~~~l~~~GIkv 89 (121)
T COG1433 48 SAEKGAGIRIAELLVDEGVDVVIASNIGPN-----AYNALKAAGIKV 89 (121)
T ss_pred cccCcchHHHHHHHHHcCCCEEEECccCHH-----HHHHHHHcCcEE
Confidence 456788999999999999999999988875 456789999974
No 111
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=35.25 E-value=3.3e+02 Score=25.88 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=30.9
Q ss_pred CccccCCChHHHHHHHHHHcCCceEEEeecCCC-hHHHHHHHHHHHCCCCC
Q 016868 87 AFKKAPGGAPANVAVGIARLGGSSAFIGKVGAD-EFGYMLADILKENNVNG 136 (381)
Q Consensus 87 ~~~~~~GG~~~NvA~~la~LG~~v~li~~vG~D-~~g~~i~~~l~~~gi~~ 136 (381)
++--.|||+....|..+..-|.. +-++--+ .-.+.+.+.+++.|+..
T Consensus 162 D~cAAPGGKTthla~~~~~~~~i---V~A~D~~~~Rl~~l~~nl~RlG~~n 209 (355)
T COG0144 162 DLCAAPGGKTTHLAELMENEGAI---VVAVDVSPKRLKRLRENLKRLGVRN 209 (355)
T ss_pred EECCCCCCHHHHHHHhcCCCCce---EEEEcCCHHHHHHHHHHHHHcCCCc
Confidence 34567999977776666544433 2333333 35677889999999985
No 112
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=34.80 E-value=4e+02 Score=25.17 Aligned_cols=96 Identities=21% Similarity=0.283 Sum_probs=53.1
Q ss_pred CceEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCc
Q 016868 108 GSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKA 187 (381)
Q Consensus 108 ~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~ 187 (381)
.++.++|.-|. .|+.+.+.|.++....+-+..... ...-|++...+. + .......+..+...+++.
T Consensus 2 ~~VavvGATG~--VG~~~~~~L~e~~f~~~~~~~~AS---------~rSaG~~~~~f~-~--~~~~v~~~~~~~~~~~~~ 67 (334)
T COG0136 2 LNVAVLGATGA--VGQVLLELLEERHFPFEELVLLAS---------ARSAGKKYIEFG-G--KSIGVPEDAADEFVFSDV 67 (334)
T ss_pred cEEEEEeccch--HHHHHHHHHHhcCCCcceEEEEec---------ccccCCcccccc-C--ccccCccccccccccccC
Confidence 46788888885 899999999998776653332211 112233312111 1 110111111223445678
Q ss_pred cEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCC
Q 016868 188 KIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPN 225 (381)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~ 225 (381)
|+++++. ..+...++...+.+.|+ +++|-.
T Consensus 68 Divf~~a-------g~~~s~~~~p~~~~~G~-~VIdns 97 (334)
T COG0136 68 DIVFFAA-------GGSVSKEVEPKAAEAGC-VVIDNS 97 (334)
T ss_pred CEEEEeC-------chHHHHHHHHHHHHcCC-EEEeCC
Confidence 8886643 12344677788888895 556664
No 113
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=34.26 E-value=2.2e+02 Score=26.94 Aligned_cols=150 Identities=20% Similarity=0.202 Sum_probs=72.8
Q ss_pred cCCChHHHHHHHHHHcCCc-eEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCC
Q 016868 91 APGGAPANVAVGIARLGGS-SAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPS 169 (381)
Q Consensus 91 ~~GG~~~NvA~~la~LG~~-v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~ 169 (381)
..||.|.|+.-.+.+-|.+ +.++. +..|. +.|+...++.. ++.-.. ... -....+.+.+..
T Consensus 18 GvGg~G~n~v~~m~~~~~~gve~ia-~nTD~------q~L~~~~a~~k-i~iG~~--~t~---GlGaGa~P~vG~----- 79 (338)
T COG0206 18 GVGGAGGNAVNRMIEEGVEGVEFIA-INTDA------QALKSSKADRK-ILIGES--ITR---GLGAGANPEVGR----- 79 (338)
T ss_pred EeCCcchHHHHHHHHhhhCceEEEE-eccCH------HHHhccccCeE-EEeccc--eee---ccCCCCCcHHHH-----
Confidence 4799999999999999988 55554 66662 33444443322 221111 000 001111111110
Q ss_pred ccccCChhccchhhcCCccEEEE-ccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCC--CCHHHHHHHHHHHhh
Q 016868 170 ADMLLQEAELDLSLITKAKIFHY-GSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLW--PSADKAREGILSIWE 246 (381)
Q Consensus 170 ~~~~~~~~~l~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~--~~~~~~~~~~~~~l~ 246 (381)
.......+.+ .+.++++|.+++ .++.-.+ -....--+.+.+++.|++++-=...+.... ...+...+.++.+-+
T Consensus 80 ~aAee~~~~I-~~~l~g~dmvfitaG~GGGT--GtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~L~~ 156 (338)
T COG0206 80 AAAEESIEEI-EEALKGADMVFVTAGMGGGT--GTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELRE 156 (338)
T ss_pred HHHHHHHHHH-HHHhccCCeEEEEeeecCCc--cccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHHHHHHHHHH
Confidence 0000111122 367888995543 3322111 112223456777888877553221111111 123456677888888
Q ss_pred hCC--EEecCHHHHhhc
Q 016868 247 TAD--IIKISEEEISFL 261 (381)
Q Consensus 247 ~~d--vl~~N~~E~~~l 261 (381)
++| ++++|+.-++..
T Consensus 157 ~~DtlIvi~Ndkll~~~ 173 (338)
T COG0206 157 VVDTLIVIPNDKLLKGK 173 (338)
T ss_pred hCCcEEEEecHHHHhcc
Confidence 888 445777655544
No 114
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=34.18 E-value=30 Score=25.34 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=34.3
Q ss_pred ccCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCC
Q 016868 90 KAPGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNG 136 (381)
Q Consensus 90 ~~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~ 136 (381)
...+|.+...+..|...|.++.+++.+|. ...+.|++.||.+
T Consensus 36 ~~~~~~~~~~~~~l~~~~v~~li~~~iG~-----~~~~~L~~~gI~v 77 (94)
T PF02579_consen 36 NEGGGGGDKIAKFLAEEGVDVLICGGIGE-----GAFRALKEAGIKV 77 (94)
T ss_dssp CCSSCHSTHHHHHHHHTTESEEEESCSCH-----HHHHHHHHTTSEE
T ss_pred ccccccchhHHHHHHHcCCCEEEEeCCCH-----HHHHHHHHCCCEE
Confidence 34568888899999999999999998875 3677889999874
No 115
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=32.96 E-value=1.3e+02 Score=23.34 Aligned_cols=42 Identities=14% Similarity=0.082 Sum_probs=27.4
Q ss_pred chhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCC
Q 016868 180 DLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLP 229 (381)
Q Consensus 180 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~ 229 (381)
+.+.+.++|+++++. +.+...++...+.+.|+ .++|.+...+
T Consensus 60 ~~~~~~~~Dvvf~a~-------~~~~~~~~~~~~~~~g~-~ViD~s~~~R 101 (121)
T PF01118_consen 60 DPEELSDVDVVFLAL-------PHGASKELAPKLLKAGI-KVIDLSGDFR 101 (121)
T ss_dssp SGHHHTTESEEEE-S-------CHHHHHHHHHHHHHTTS-EEEESSSTTT
T ss_pred chhHhhcCCEEEecC-------chhHHHHHHHHHhhCCc-EEEeCCHHHh
Confidence 345568899987653 23455677777788888 6688865443
No 116
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.48 E-value=2.6e+02 Score=25.23 Aligned_cols=78 Identities=9% Similarity=0.091 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHh------hccCCC---------CC
Q 016868 203 KSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEIS------FLTQGE---------DP 267 (381)
Q Consensus 203 ~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~------~l~~~~---------~~ 267 (381)
.+.+..+.+.+++.|++++-++.. ...+..+.+++|++++--.+.+ .+-+.. ..
T Consensus 65 ~~gl~~L~~~~~~~Gl~~~Tev~d-----------~~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~ 133 (250)
T PRK13397 65 LQGIRYLHEVCQEFGLLSVSEIMS-----------ERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMA 133 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCC-----------HHHHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCC
Confidence 456777788888999999998842 2233344557999987443332 221111 11
Q ss_pred C---hHHHHHHHHhcCCCEEEEEe-cCC
Q 016868 268 Y---DDAVVYKLFHANLKLLLVTE-GPD 291 (381)
Q Consensus 268 ~---~~~~~~~l~~~g~~~vvvt~-G~~ 291 (381)
+ ...+++.+.+.|.+.+++.. |-.
T Consensus 134 t~~e~~~A~e~i~~~Gn~~i~L~eRg~~ 161 (250)
T PRK13397 134 TIEEYLGALSYLQDTGKSNIILCERGVR 161 (250)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEccccC
Confidence 1 23455777778887777765 543
No 117
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=32.15 E-value=1.1e+02 Score=27.53 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeeec
Q 016868 94 GAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFD 142 (381)
Q Consensus 94 G~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~ 142 (381)
-++...|.-|..+|.++..+..|||| -+.|.+.++..-=+.+.+.+.
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~--~~~I~~~l~~a~~r~D~vI~t 67 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDN--PDRIVEALREASERADVVITT 67 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCC--HHHHHHHHHHHHhCCCEEEEC
Confidence 45788899999999999999999998 456777776653334444443
No 118
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=31.91 E-value=78 Score=23.51 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCC
Q 016868 93 GGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNG 136 (381)
Q Consensus 93 GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~ 136 (381)
+|.+...+..|...|.++.+++.+|.. ..+.|++.||.+
T Consensus 49 ~~~~~~~~~~l~~~~v~~vi~~~iG~~-----~~~~l~~~gI~v 87 (103)
T cd00851 49 GGAGGKAAEFLADEGVDVVIVGGIGPR-----ALNKLRNAGIKV 87 (103)
T ss_pred CCCchHHHHHHHHcCCCEEEeCCCCcC-----HHHHHHHCCCEE
Confidence 455678888898899999999988865 567788899874
No 119
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=31.75 E-value=4.2e+02 Score=25.17 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=59.9
Q ss_pred cCCccEEEEccc--cc---cCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh-hCCEEecCHHH
Q 016868 184 ITKAKIFHYGSI--SL---ITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWE-TADIIKISEEE 257 (381)
Q Consensus 184 i~~~~~~~~~~~--~~---~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~-~~dvl~~N~~E 257 (381)
-..+|.++++.- .+ -.+...+.+.+.++.++++|+++.+-.+..... ...+.+.+.+..+.. .+|-++++.--
T Consensus 24 ~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~-~~~~~~~~~l~~l~e~GvDaviv~Dpg 102 (347)
T COG0826 24 AAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHN-DELETLERYLDRLVELGVDAVIVADPG 102 (347)
T ss_pred HcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEecccccc-chhhHHHHHHHHHHHcCCCEEEEcCHH
Confidence 356899988743 11 123456668899999999999877766543221 112334455555444 58888888776
Q ss_pred HhhccCCCCCC------------hHHHHHHHHhcCCCEEEEE
Q 016868 258 ISFLTQGEDPY------------DDAVVYKLFHANLKLLLVT 287 (381)
Q Consensus 258 ~~~l~~~~~~~------------~~~~~~~l~~~g~~~vvvt 287 (381)
+-.+.....++ -.+.++.+.++|.+.+|..
T Consensus 103 ~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~ 144 (347)
T COG0826 103 LIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLP 144 (347)
T ss_pred HHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeC
Confidence 66555433221 1234455556665555543
No 120
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=31.59 E-value=2.2e+02 Score=23.27 Aligned_cols=58 Identities=16% Similarity=0.062 Sum_probs=40.9
Q ss_pred cEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHH
Q 016868 188 KIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEI 258 (381)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~ 258 (381)
+.|.++|- +...+.+.++++.+++.|..+.++.++.. .+...++++.+|+++....+.
T Consensus 63 ~gVt~SGG----El~~~~l~~ll~~lk~~Gl~i~l~Tg~~~---------~~~~~~il~~iD~l~~g~y~~ 120 (147)
T TIGR02826 63 SCVLFLGG----EWNREALLSLLKIFKEKGLKTCLYTGLEP---------KDIPLELVQHLDYLKTGRWIH 120 (147)
T ss_pred CEEEEech----hcCHHHHHHHHHHHHHCCCCEEEECCCCC---------HHHHHHHHHhCCEEEEChHHH
Confidence 34555442 24556778999999999999999987422 124456788999999887544
No 121
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=31.56 E-value=1.4e+02 Score=27.86 Aligned_cols=52 Identities=10% Similarity=0.046 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHCCCeEEEeCCC-CCCCCCC---------HHHHHHHHHHHhh---hCCEEec
Q 016868 202 CKSAHIAAAKAAKDAGVVLSYDPNL-RLPLWPS---------ADKAREGILSIWE---TADIIKI 253 (381)
Q Consensus 202 ~~~~~~~~l~~a~~~g~~v~~D~~~-~~~~~~~---------~~~~~~~~~~~l~---~~dvl~~ 253 (381)
....+.++-..|+..+++.++.+-. ...+-.. ++...+.++++-. .+||+++
T Consensus 140 k~a~vervg~eC~a~dipf~lE~ltY~~~~~d~~~~~yak~kP~~V~~a~kefs~~~~gvDVlKv 204 (324)
T PRK12399 140 KKAYIERIGSECVAEDIPFFLEILTYDEKIADNGSVEYAKVKPHKVNEAMKVFSKPRFGVDVLKV 204 (324)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeeccCcccccccHHHHhhChHHHHHHHHHhccCCCCCcEEEE
Confidence 3556667777899999999998732 2222111 2233344555432 6999997
No 122
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=30.51 E-value=2.9e+02 Score=26.60 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=15.5
Q ss_pred HHHHHHHHHCCCeEEEeCCC
Q 016868 207 IAAAKAAKDAGVVLSYDPNL 226 (381)
Q Consensus 207 ~~~l~~a~~~g~~v~~D~~~ 226 (381)
.++.+.|+++|+.+++|-..
T Consensus 166 ~~I~~la~~~gi~livD~t~ 185 (390)
T PRK08133 166 AALAEIAHAAGALLVVDNCF 185 (390)
T ss_pred HHHHHHHHHcCCEEEEECCC
Confidence 46677788889999998753
No 123
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=29.59 E-value=3.9e+02 Score=23.45 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=55.4
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhh-CCEEecC-----HHHHhh
Q 016868 187 AKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWET-ADIIKIS-----EEEISF 260 (381)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~-~dvl~~N-----~~E~~~ 260 (381)
+|++-+.-. ...+...++++.+++.+.+++..-+.....|. .+.+...+...-.. +|++++- ..+...
T Consensus 93 ~d~vDiEl~-----~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~-~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ 166 (228)
T TIGR01093 93 PDFVDIELF-----LPDDAVKELINIAKKGGTKIIMSYHDFQKTPS-WEEIVERLEKALSYGADIVKIAVMANSKEDVLT 166 (228)
T ss_pred CCEEEEEcc-----CCHHHHHHHHHHHHHCCCEEEEeccCCCCCCC-HHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHH
Confidence 577765532 12345567777788889999987754444443 34455666665555 8998862 223222
Q ss_pred ccCCCCCChHHHHHHHHh-cCCCEEEEEecCCceEE
Q 016868 261 LTQGEDPYDDAVVYKLFH-ANLKLLLVTEGPDGCRY 295 (381)
Q Consensus 261 l~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~ 295 (381)
+. .+...+.+ ...+.+.+.+|+.|..-
T Consensus 167 ll--------~~~~~~~~~~~~p~i~~~MG~~G~~S 194 (228)
T TIGR01093 167 LL--------EITNKVDEHADVPLITMSMGDRGKIS 194 (228)
T ss_pred HH--------HHHHHHHhcCCCCEEEEeCCCCChhH
Confidence 21 11122221 34678899999998543
No 124
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=28.83 E-value=5.1e+02 Score=24.65 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=22.5
Q ss_pred ccCCChHHHHHHHHHHcCCceEEEeecCCC
Q 016868 90 KAPGGAPANVAVGIARLGGSSAFIGKVGAD 119 (381)
Q Consensus 90 ~~~GG~~~NvA~~la~LG~~v~li~~vG~D 119 (381)
.-.||.|.|+.-.+.+.|.+-.-+-.+-.|
T Consensus 23 iGvGg~G~n~v~~l~~~~~~~~~~iainTD 52 (349)
T TIGR00065 23 IGVGGGGNNTVNRMLEEGVEGVEFIAINTD 52 (349)
T ss_pred EEeCCcHHHHHHHHHHcCCCceEEEEEECC
Confidence 348999999999999998654444446666
No 125
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=28.69 E-value=37 Score=33.35 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=22.4
Q ss_pred ceEEEccccc-cccCCCCccHHHHHHHHHHHH
Q 016868 300 FSGRVQGLKV-EAVDATGAGDAFVAGILSQLS 330 (381)
Q Consensus 300 ~~~~~~~~~v-~vvdttGAGDaF~ag~l~~l~ 330 (381)
....+|..-+ +++.|+|-||+++||-..+++
T Consensus 416 ~~~~iPt~~v~~P~sTVGlGDtisa~af~~~l 447 (453)
T PRK14039 416 SVCILPTLVSKSPVTTVGLGDTLTAGTFLRLL 447 (453)
T ss_pred eEEEechhhccCCccccccCccccHHHHHHHH
Confidence 3445666555 699999999999877655554
No 126
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=27.69 E-value=4.9e+02 Score=24.32 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=35.8
Q ss_pred hhcCCccEEEEccccccCchh----HHHHHHHHHHHHHCCCeEEEeCCC-CCC---CCCCHHHHHHHHHHHhh--hCCEE
Q 016868 182 SLITKAKIFHYGSISLITEPC----KSAHIAAAKAAKDAGVVLSYDPNL-RLP---LWPSADKAREGILSIWE--TADII 251 (381)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~~----~~~~~~~l~~a~~~g~~v~~D~~~-~~~---~~~~~~~~~~~~~~~l~--~~dvl 251 (381)
+.|+++|+++++.-.+++... ..-+.+++ ++..+++++=++. ..+ ...+..+..+.+.+.+. .+|++
T Consensus 168 ~AI~~ADlIvlgPGSlyTSIiPnLlv~gI~eAI---~~s~a~kV~v~N~~tq~gEt~g~~~~dhv~~i~~~~g~~~~D~v 244 (310)
T TIGR01826 168 EAIREADLIILGPGSLYTSIIPNLLVPEIAEAL---RESKAPKVYVCNLMTQPGETDGFSLEDHVDALHRHLGKPFIDTV 244 (310)
T ss_pred HHHHhCCEEEECCCcCHHHhchhcCchhHHHHH---HhCCCCEEEEeCCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCEE
Confidence 578899999987544433222 22333333 3334444432221 111 11122333344444443 47988
Q ss_pred ecCHHHH
Q 016868 252 KISEEEI 258 (381)
Q Consensus 252 ~~N~~E~ 258 (381)
..|..+.
T Consensus 245 lvn~~~~ 251 (310)
T TIGR01826 245 LVNTEKV 251 (310)
T ss_pred EECCCCC
Confidence 8886543
No 127
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=27.59 E-value=2.2e+02 Score=23.81 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=12.1
Q ss_pred HHHHHHHHhcCCCEEEEEecC
Q 016868 270 DAVVYKLFHANLKLLLVTEGP 290 (381)
Q Consensus 270 ~~~~~~l~~~g~~~vvvt~G~ 290 (381)
+++++.+.+.++..|+|-+|.
T Consensus 91 ~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 91 EAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred HHHHHHHHHcCCCEEEEECCC
Confidence 344555555666666666654
No 128
>PRK09330 cell division protein FtsZ; Validated
Probab=27.23 E-value=5.2e+02 Score=24.98 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=66.6
Q ss_pred ccCCChHHHHHHHHHHcCCc-eEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCC
Q 016868 90 KAPGGAPANVAVGIARLGGS-SAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNP 168 (381)
Q Consensus 90 ~~~GG~~~NvA~~la~LG~~-v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~ 168 (381)
.-.||.|.|+.-.+.+.|.+ +.|+. +-.|. +.|.....+.. ++.-+. .|. =....++.... .
T Consensus 19 iGvGG~G~Nav~~m~~~~~~~v~fia-~NTD~------q~L~~~~a~~k-i~lG~~-~t~----GlGaG~~pe~G----~ 81 (384)
T PRK09330 19 IGVGGGGGNAVNRMIEEGIQGVEFIA-ANTDA------QALLKSKAPVK-IQLGEK-LTR----GLGAGANPEVG----R 81 (384)
T ss_pred EEECCcHHHHHHHHHHcCCCCceEEE-EeCcH------HHHhcCCCCeE-EEcCCc-ccc----cCCCCCCHHHH----H
Confidence 45899999999999998853 55443 55562 23444333321 111111 000 00011111100 0
Q ss_pred CccccCChhccchhhcCCccEEEEc-cccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCC---CHHHHHHHHHHH
Q 016868 169 SADMLLQEAELDLSLITKAKIFHYG-SISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWP---SADKAREGILSI 244 (381)
Q Consensus 169 ~~~~~~~~~~l~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~---~~~~~~~~~~~~ 244 (381)
.+. ....+.+ .+.++++|.+.+. ++.-.+. ....--+.+.+++.++.++.=... +..+. ....+...+.++
T Consensus 82 ~aa-ee~~e~I-~~~l~~~D~vfI~AGmGGGTG--TGaapvIA~iake~g~ltvaVvt~-PF~fEG~~r~~nA~~gL~~L 156 (384)
T PRK09330 82 KAA-EESREEI-REALEGADMVFITAGMGGGTG--TGAAPVVAEIAKELGILTVAVVTK-PFSFEGKKRMKQAEEGIEEL 156 (384)
T ss_pred HHH-HHHHHHH-HHHHcCCCEEEEEecCCCccc--HHHHHHHHHHHHHcCCcEEEEEec-CccccchhHHHHHHHHHHHH
Confidence 000 0111122 3567899988653 3211111 122224557778888764422211 11111 123466788888
Q ss_pred hhhCCEEe
Q 016868 245 WETADIIK 252 (381)
Q Consensus 245 l~~~dvl~ 252 (381)
.+++|.++
T Consensus 157 ~~~~D~vI 164 (384)
T PRK09330 157 RKHVDTLI 164 (384)
T ss_pred HHHCCEEE
Confidence 89999665
No 129
>PRK13018 cell division protein FtsZ; Provisional
Probab=26.94 E-value=4.9e+02 Score=25.08 Aligned_cols=142 Identities=20% Similarity=0.197 Sum_probs=67.2
Q ss_pred ccCCChHHHHHHHHHHcCCc-eEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCC
Q 016868 90 KAPGGAPANVAVGIARLGGS-SAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNP 168 (381)
Q Consensus 90 ~~~GG~~~NvA~~la~LG~~-v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~ 168 (381)
.-.||.|.|+.-.+.+.|.. +.++. +-.|. +.|.....+.. +..-+. .|.- ....+++....
T Consensus 34 iGvGGaG~N~v~~m~~~~~~~v~~ia-iNTD~------q~L~~~~a~~k-i~iG~~-~t~G----~GaG~dp~~G~---- 96 (378)
T PRK13018 34 VGCGGAGNNTINRLYEIGIEGAETIA-INTDA------QHLAMIKADKK-ILIGKS-LTRG----LGAGGDPEVGR---- 96 (378)
T ss_pred EEeCCcHHHHHHHHHHcCCCCceEEE-EECCH------HHHhcCCCCcE-EecCCc-cCCC----CCCCCChHHHH----
Confidence 35899999999999999865 44444 56673 34444333321 111111 0000 00111221110
Q ss_pred CccccCChhccchhhcCCccEEEE-ccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCC---CHHHHHHHHHHH
Q 016868 169 SADMLLQEAELDLSLITKAKIFHY-GSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWP---SADKAREGILSI 244 (381)
Q Consensus 169 ~~~~~~~~~~l~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~---~~~~~~~~~~~~ 244 (381)
.+. ....+.+ .+.++++|.+++ .++.-.+ -.....-+++.+++.++.++ +....|..+. ....+...+..+
T Consensus 97 ~aa-ee~~d~I-~~~le~~D~vfI~aGLGGGT--GSGaapvIa~iake~g~ltv-~vVt~Pf~~EG~~r~~nA~~gL~~L 171 (378)
T PRK13018 97 KAA-EESRDEI-KEVLKGADLVFVTAGMGGGT--GTGAAPVVAEIAKEQGALVV-GVVTKPFKFEGRARMQKAEEGIERL 171 (378)
T ss_pred HHH-HHHHHHH-HHHhcCCCEEEEEeeccCcc--hhhHHHHHHHHHHHcCCCeE-EEEEcCcccccHhHHHHHHHHHHHH
Confidence 000 0111222 256788998764 3322112 12233455677777776543 2211111111 112355778888
Q ss_pred hhhCCEEec
Q 016868 245 WETADIIKI 253 (381)
Q Consensus 245 l~~~dvl~~ 253 (381)
.+++|.+++
T Consensus 172 ~e~~D~viv 180 (378)
T PRK13018 172 REAADTVIV 180 (378)
T ss_pred HHhCCEEEE
Confidence 889996653
No 130
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=26.59 E-value=2.3e+02 Score=27.53 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=17.9
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCC
Q 016868 207 IAAAKAAKDAGVVLSYDPNLRLP 229 (381)
Q Consensus 207 ~~~l~~a~~~g~~v~~D~~~~~~ 229 (381)
..+.+.|+++|+.|++|-....+
T Consensus 182 ~~l~~la~~~g~~vvVDnTf~~p 204 (409)
T KOG0053|consen 182 EKLARLAHKYGFLVVVDNTFGSP 204 (409)
T ss_pred HHHHHHHhhCCCEEEEeCCcCcc
Confidence 46677788999999999865444
No 131
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=26.58 E-value=1.4e+02 Score=24.35 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=28.8
Q ss_pred hhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCC
Q 016868 181 LSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPN 225 (381)
Q Consensus 181 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~ 225 (381)
.+.+.++|++.+++.++.+. ++.++++.+++....+++=|.
T Consensus 57 ~~~l~~aD~viiTGsTlvN~----Ti~~iL~~~~~~~~vil~GpS 97 (147)
T PF04016_consen 57 EEILPWADVVIITGSTLVNG----TIDDILELARNAREVILYGPS 97 (147)
T ss_dssp HHHGGG-SEEEEECHHCCTT----THHHHHHHTTTSSEEEEESCC
T ss_pred HHHHccCCEEEEEeeeeecC----CHHHHHHhCccCCeEEEEecC
Confidence 47789999999998877764 456778888855555556654
No 132
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=26.06 E-value=1.5e+02 Score=21.42 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=30.9
Q ss_pred HHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCC
Q 016868 99 VAVGIARLGGSSAFIGKVGADEFGYMLADILKENN 133 (381)
Q Consensus 99 vA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~g 133 (381)
.....+++|.++.|.++-+.|-....+.+.|.+.|
T Consensus 26 ~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 26 KAAIIEKFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred HHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 44557899999999999999988999999999887
No 133
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=25.65 E-value=1.8e+02 Score=19.86 Aligned_cols=14 Identities=43% Similarity=0.449 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHcC
Q 016868 319 DAFVAGILSQLSTD 332 (381)
Q Consensus 319 DaF~ag~l~~l~~g 332 (381)
|+|.+++.+++.+-
T Consensus 4 Daf~vg~~~g~~~~ 17 (67)
T PF02659_consen 4 DAFAVGISYGLRGI 17 (67)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999999843
No 134
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=24.95 E-value=2.2e+02 Score=22.93 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=33.6
Q ss_pred CChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeeec
Q 016868 93 GGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFD 142 (381)
Q Consensus 93 GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~ 142 (381)
--++..++..|.++|.++...+.+++|. +.|.+.+++.--..+.+...
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~--~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRLGIVPDDP--EEIREILRKAVDEADVVLTT 73 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEEeecCCCH--HHHHHHHHHHHhCCCEEEEC
Confidence 3456788889999999999999999983 44666666542234444443
No 135
>PRK03673 hypothetical protein; Provisional
Probab=24.79 E-value=2e+02 Score=27.95 Aligned_cols=49 Identities=20% Similarity=0.108 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCC
Q 016868 94 GAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPG 144 (381)
Q Consensus 94 G~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~ 144 (381)
.++...+..|..+|.++...+.++|| -+.|.+.+++..-..+.+.+..+
T Consensus 21 tN~~~la~~L~~~G~~v~~~~~v~D~--~~~i~~~l~~a~~~~DlVI~tGG 69 (396)
T PRK03673 21 TNAAWLADFFFHQGLPLSRRNTVGDN--LDALVAILRERSQHADVLIVNGG 69 (396)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEcCCC--HHHHHHHHHHHhccCCEEEEcCC
Confidence 36788899999999999999999998 45688888776545565655544
No 136
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=24.64 E-value=2.3e+02 Score=21.82 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCEEEEEecCCceEEEeCCceEEEcccc
Q 016868 270 DAVVYKLFHANLKLLLVTEGPDGCRYYTKDFSGRVQGLK 308 (381)
Q Consensus 270 ~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~ 308 (381)
.++++.+.++|++.+.+|.....-+.-..+....++..+
T Consensus 64 ~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~ 102 (128)
T cd05014 64 LNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPVEE 102 (128)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECCCCc
Confidence 466788888999999999987766554445444444433
No 137
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.60 E-value=45 Score=28.46 Aligned_cols=44 Identities=20% Similarity=0.484 Sum_probs=36.8
Q ss_pred CCccHHHHHHHHHH-HHcCCccccchHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 016868 315 TGAGDAFVAGILSQ-LSTDFSLLQKEDQLRDALRFANACGALTVMERGAIPA 365 (381)
Q Consensus 315 tGAGDaF~ag~l~~-l~~g~~~~~~~~~l~~al~~A~~~Aa~~~~~~G~~~~ 365 (381)
-|.|-+|.=||+-. |-.+++ ++||.+|-..+-++.+.+.|...+
T Consensus 147 gGSGStfIYGf~D~~~r~nMt-------~EE~~~fvk~Av~lAi~rDGsSGG 191 (224)
T KOG0174|consen 147 GGSGSTFIYGFCDANWRPNMT-------LEECVRFVKNAVSLAIERDGSSGG 191 (224)
T ss_pred ccCCceeeeeeehhhcCCCCC-------HHHHHHHHHHHHHHHHhccCCCCC
Confidence 58999998888854 456788 999999999999999999887644
No 138
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=24.55 E-value=5e+02 Score=23.08 Aligned_cols=97 Identities=7% Similarity=0.024 Sum_probs=53.5
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhh-CCEEec-----CHHHHhh
Q 016868 187 AKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWET-ADIIKI-----SEEEISF 260 (381)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~-~dvl~~-----N~~E~~~ 260 (381)
+|++-+.-.. ....+...++++.+++.|.++++.-+..... ++.+.....+...... +|++++ +..+...
T Consensus 98 ~d~vDiE~~~---~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~T-P~~~~l~~~~~~m~~~gaDi~KiAv~~~~~~Dvl~ 173 (238)
T PRK13575 98 IDMIDIEWQA---DIDIEKHQRLITHLQQYNKEVVISHHNFEST-PPLDELKFIFFKMQKFNPEYVKLAVMPHNKNDVLN 173 (238)
T ss_pred CCEEEEEccc---CCChHHHHHHHHHHHHcCCEEEEecCCCCCC-CCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHH
Confidence 4776555321 1233556677888888999999866432221 1234455555555443 788886 1222222
Q ss_pred ccCCCCCChHHHHHHHHh-cCCCEEEEEecCCceEE
Q 016868 261 LTQGEDPYDDAVVYKLFH-ANLKLLLVTEGPDGCRY 295 (381)
Q Consensus 261 l~~~~~~~~~~~~~~l~~-~g~~~vvvt~G~~G~~~ 295 (381)
|+ .+.....+ ...+.+.+.+|+.|.+-
T Consensus 174 Ll--------~~~~~~~~~~~~p~i~i~MG~~G~iS 201 (238)
T PRK13575 174 LL--------QAMSTFSDTMDCKVVGISMSKLGLIS 201 (238)
T ss_pred HH--------HHHHHHHhccCCCEEEEeCCCCCchh
Confidence 21 11112212 35678899999999643
No 139
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.55 E-value=1.5e+02 Score=22.10 Aligned_cols=39 Identities=28% Similarity=0.221 Sum_probs=27.5
Q ss_pred hhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeC
Q 016868 182 SLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDP 224 (381)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~ 224 (381)
..+.++|++++- .+-.+-.....+-+.|++.++|+++--
T Consensus 44 ~~i~~aD~VIv~----t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 44 SKIKKADLVIVF----TDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HhcCCCCEEEEE----eCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 557788887531 223344567778889999999998765
No 140
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=24.31 E-value=5.3e+02 Score=23.28 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=47.5
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHHHC-CCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEe-cCHHHHhhcc
Q 016868 185 TKAKIFHYGSISLITEPCKSAHIAAAKAAKDA-GVVLSYDPNLRLPLWPSADKAREGILSIWETADIIK-ISEEEISFLT 262 (381)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~-g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~-~N~~E~~~l~ 262 (381)
++++++-+++-.. .....+.+..+++..++. ++++++|.. +.+.....++. .+..+++- +|.++
T Consensus 37 ~GAdiIDVg~~~~-~~eE~~r~~~~v~~l~~~~~~plsIDT~-------~~~v~eaaL~~-~~G~~iINsIs~~~----- 102 (261)
T PRK07535 37 AGADYLDVNAGTA-VEEEPETMEWLVETVQEVVDVPLCIDSP-------NPAAIEAGLKV-AKGPPLINSVSAEG----- 102 (261)
T ss_pred CCCCEEEECCCCC-chhHHHHHHHHHHHHHHhCCCCEEEeCC-------CHHHHHHHHHh-CCCCCEEEeCCCCC-----
Confidence 5688888876421 122244556667766553 788999974 22333333321 22345431 22111
Q ss_pred CCCCCChHHHHHHHHhcCCCEEEEEecCCc
Q 016868 263 QGEDPYDDAVVYKLFHANLKLLLVTEGPDG 292 (381)
Q Consensus 263 ~~~~~~~~~~~~~l~~~g~~~vvvt~G~~G 292 (381)
. ..++.+..+.+.++..|+++...+|
T Consensus 103 ---~-~~~~~~~l~~~~g~~vv~m~~~~~g 128 (261)
T PRK07535 103 ---E-KLEVVLPLVKKYNAPVVALTMDDTG 128 (261)
T ss_pred ---c-cCHHHHHHHHHhCCCEEEEecCCCC
Confidence 0 0134455555678888887776565
No 141
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=24.21 E-value=1.9e+02 Score=24.22 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=38.8
Q ss_pred cCCCh-HHHHHHHHHHcCCceEEEe-ecCCChHHHHHHHHHHHCCCCCCCeee
Q 016868 91 APGGA-PANVAVGIARLGGSSAFIG-KVGADEFGYMLADILKENNVNGAGMRF 141 (381)
Q Consensus 91 ~~GG~-~~NvA~~la~LG~~v~li~-~vG~D~~g~~i~~~l~~~gi~~~~v~~ 141 (381)
.-||+ ..-.|..|.+||.++.+++ .+|--..++...+..+..|.+..-++.
T Consensus 7 fSGGKDSSLaA~iL~klgyev~LVTvnFGv~d~~k~A~~tA~~lgF~h~vl~L 59 (198)
T COG2117 7 FSGGKDSSLAALILDKLGYEVELVTVNFGVLDSWKYARETAAILGFPHEVLQL 59 (198)
T ss_pred ecCCCchhHHHHHHHHhCCCcEEEEEEeccccchhhHHHHHHHhCCCcceecc
Confidence 45776 4567888999999999999 457545678888888888887764443
No 142
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=23.55 E-value=4.9e+02 Score=22.62 Aligned_cols=75 Identities=19% Similarity=0.052 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEec-----CHHHHhhccCCCCCChHHHHHHHH
Q 016868 203 KSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKI-----SEEEISFLTQGEDPYDDAVVYKLF 277 (381)
Q Consensus 203 ~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~-----N~~E~~~l~~~~~~~~~~~~~~l~ 277 (381)
++...++++.+++.|+.+.+..+.....+ .+.+.++++..|.+.+ +.+....+.+.......+.++.+.
T Consensus 80 ~~~~~~li~~~~~~g~~~~i~TNG~~~~~------~~~~~~ll~~~d~v~isl~~~~~~~~~~~~g~~~~~v~~~i~~l~ 153 (235)
T TIGR02493 80 PEFLSELFKACKELGIHTCLDTSGFLGGC------TEAADELLEYTDLVLLDIKHFNPEKYKKLTGVSLQPTLDFAKYLA 153 (235)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCCCcc------HHHHHHHHHhCCEEEEeCCCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 34456888899999988888876521111 2233445556676654 344444555542222234556666
Q ss_pred hcCCCE
Q 016868 278 HANLKL 283 (381)
Q Consensus 278 ~~g~~~ 283 (381)
+.|.+.
T Consensus 154 ~~g~~~ 159 (235)
T TIGR02493 154 KRNKPI 159 (235)
T ss_pred hCCCcE
Confidence 666653
No 143
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=23.47 E-value=2.4e+02 Score=23.58 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=28.8
Q ss_pred ChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHC
Q 016868 94 GAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKEN 132 (381)
Q Consensus 94 G~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~ 132 (381)
.++...+..|..+|.++..+..+++|. +.|.+.+++.
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~~~v~Dd~--~~I~~~l~~~ 55 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRVTVVGDDE--DRIAEALRRA 55 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEEEEeCCCH--HHHHHHHHHH
Confidence 456788888999999999999999983 3466666553
No 144
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=23.20 E-value=5.7e+02 Score=23.21 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=41.8
Q ss_pred hhcCCccEEEEccccccCch-h---HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEec
Q 016868 182 SLITKAKIFHYGSISLITEP-C---KSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKI 253 (381)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~-~---~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~ 253 (381)
+.+.++|+++++|-.++.+. . .-....++..++..|.++++=.+.-.++. . ...+.....+++.+|.+.+
T Consensus 60 ~~l~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~-~-~~~r~~~~~~l~~~~~i~v 133 (298)
T TIGR03609 60 RALRRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGPLR-R-RLSRWLVRRVLRGCRAISV 133 (298)
T ss_pred HHHHHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCCcC-C-HHHHHHHHHHHccCCEEEE
Confidence 56788999888765443321 1 11223455667778887776544333321 1 2345566678899999887
No 145
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=23.10 E-value=6.3e+02 Score=23.72 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=53.1
Q ss_pred ceEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhcCCcc
Q 016868 109 SSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLITKAK 188 (381)
Q Consensus 109 ~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~ 188 (381)
++.+ |..|. .|+.+++.|++.++.+..+...... ....| +.+.+ ++ ..+.-+.+....+++.|
T Consensus 5 ~iAi-GATg~--VG~~~l~~Leer~fpv~~l~l~~s~--------~~s~g-k~i~f-~g----~~~~V~~l~~~~f~~vD 67 (322)
T PRK06901 5 NIAI-AAEFE--LSEKLLEALEQSDLEIEQISIVEIE--------PFGEE-QGIRF-NN----KAVEQIAPEEVEWADFN 67 (322)
T ss_pred eEEE-ecCcH--HHHHHHHHHHhcCCchhheeecccc--------cccCC-CEEEE-CC----EEEEEEECCccCcccCC
Confidence 4555 76664 8999999999999987755443221 01122 11111 11 11233344445567889
Q ss_pred EEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCC
Q 016868 189 IFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPN 225 (381)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~ 225 (381)
++++.+ .+...++...+.+.|+.| +|-+
T Consensus 68 ia~fag--------~~~s~~~ap~a~~aG~~V-IDnS 95 (322)
T PRK06901 68 YVFFAG--------KMAQAEHLAQAAEAGCIV-IDLY 95 (322)
T ss_pred EEEEcC--------HHHHHHHHHHHHHCCCEE-EECC
Confidence 886632 245567777788888765 5654
No 146
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=22.85 E-value=1.3e+02 Score=27.83 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHcCCceEEEee
Q 016868 92 PGGAPANVAVGIARLGGSSAFIGK 115 (381)
Q Consensus 92 ~GG~~~NvA~~la~LG~~v~li~~ 115 (381)
.|+.|.-.|..|++.|.+|.+++.
T Consensus 13 ~GaiG~~lA~~L~~~g~~V~~~~r 36 (313)
T PRK06249 13 TGAIGGFYGAMLARAGFDVHFLLR 36 (313)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEe
Confidence 788899999999999999999986
No 147
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=22.80 E-value=98 Score=23.87 Aligned_cols=94 Identities=16% Similarity=0.249 Sum_probs=46.2
Q ss_pred cCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccch-hhcCCccEEEEcc
Q 016868 116 VGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDL-SLITKAKIFHYGS 194 (381)
Q Consensus 116 vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~i~~~~~~~~~~ 194 (381)
+|..+.+-++.+.+++.|+.+-.+...++..+... ...++.+..-.......-++.+.+-. ...+.++.+| .|
T Consensus 8 anrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~~-----~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~-pG 81 (110)
T PF00289_consen 8 ANRGEIAVRIIRALRELGIETVAVNSNPDTVSTHV-----DMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIH-PG 81 (110)
T ss_dssp SS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHHH-----HHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEE-ST
T ss_pred ECCCHHHHHHHHHHHHhCCcceeccCchhcccccc-----cccccceecCcchhhhhhccHHHHhhHhhhhcCcccc-cc
Confidence 34556688888889999888776665554322210 11233333322222333345544432 2223566665 44
Q ss_pred ccccCchhHHHHHHHHHHHHHCCCeE
Q 016868 195 ISLITEPCKSAHIAAAKAAKDAGVVL 220 (381)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~a~~~g~~v 220 (381)
+..+.+. .++.+.+.+.|+.+
T Consensus 82 yg~lse~-----~~fa~~~~~~gi~f 102 (110)
T PF00289_consen 82 YGFLSEN-----AEFAEACEDAGIIF 102 (110)
T ss_dssp SSTTTTH-----HHHHHHHHHTT-EE
T ss_pred cchhHHH-----HHHHHHHHHCCCEE
Confidence 4444432 24455556677654
No 148
>PTZ00058 glutathione reductase; Provisional
Probab=22.48 E-value=94 Score=31.69 Aligned_cols=62 Identities=18% Similarity=0.036 Sum_probs=0.0
Q ss_pred ceecccccCCCCCCCCCCCCCCccccCCCCcccccccccCCCCCCCCccCCCCCcEEEEccceeecccCCCCCCccCCCC
Q 016868 8 FCFTGAVSSYSHSSVKLSTHPTIKASSPLPRLNVRVKALPGDGLSETKETRESPLVVCFGEMLIDFVPTVSGLSLAESPA 87 (381)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviG~~~iD~~~~~~~~~~~~~~~ 87 (381)
|.|... -+++.|+++.+ +....-..++ ++.++..+|+|||
T Consensus 16 ~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~-------~~~~~~yDvvVIG-------------------- 55 (561)
T PTZ00058 16 LNPSIK-LIRSFSFYHNL------------EASSAPTHLK-------KKPRMVYDLIVIG-------------------- 55 (561)
T ss_pred hhhhHh-hhhhhchhhhh------------cccCcccccc-------cCCCccccEEEEC--------------------
Q ss_pred ccccCCChHHHHHHHHHHcCCceEEE
Q 016868 88 FKKAPGGAPANVAVGIARLGGSSAFI 113 (381)
Q Consensus 88 ~~~~~GG~~~NvA~~la~LG~~v~li 113 (381)
.|-.|.+.|..++++|.+|.+|
T Consensus 56 ----~G~aG~~aA~~aa~~G~~ValI 77 (561)
T PTZ00058 56 ----GGSGGMAAARRAARNKAKVALV 77 (561)
T ss_pred ----cCHHHHHHHHHHHHcCCeEEEE
No 149
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=22.45 E-value=4.8e+02 Score=22.04 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHCCCCCCCeeec----CCCCceEEEEEecCCCCceEEEe
Q 016868 118 ADEFGYMLADILKENNVNGAGMRFD----PGARTALAFVTLRSDGEREFMFY 165 (381)
Q Consensus 118 ~D~~g~~i~~~l~~~gi~~~~v~~~----~~~~t~~~~~~~~~~g~~~~~~~ 165 (381)
.-..-..+.+.|++.|..+.++... .+.++|+.++.++ +|++.+..+
T Consensus 18 KtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~-tg~~~~la~ 68 (179)
T COG1618 18 KTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLA-TGEEGILAR 68 (179)
T ss_pred HHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEcc-CCceEEEEE
Confidence 3345567888899998877776554 4677888887764 566655543
No 150
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=22.39 E-value=5.4e+02 Score=24.46 Aligned_cols=94 Identities=15% Similarity=0.205 Sum_probs=51.7
Q ss_pred CCceEEEeecCCChHHHHHHHHHHH-CCCCCCCeeecC-CCCceEEEEEecCCCCceEEEecCCCccccCChhccchhhc
Q 016868 107 GGSSAFIGKVGADEFGYMLADILKE-NNVNGAGMRFDP-GARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDLSLI 184 (381)
Q Consensus 107 G~~v~li~~vG~D~~g~~i~~~l~~-~gi~~~~v~~~~-~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~i 184 (381)
+.++.++|.-| ..|+.+++.|.+ ..+++..+.... ....|..+.+. ++ . +..+.++.+.+
T Consensus 5 ~~~VaIvGATG--~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~---~~-----------~--l~v~~~~~~~~ 66 (347)
T PRK06728 5 GYHVAVVGATG--AVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFK---GR-----------E--IIIQEAKINSF 66 (347)
T ss_pred CCEEEEEeCCC--HHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeC---Cc-----------c--eEEEeCCHHHh
Confidence 35778888877 489999999995 677755443222 21222222110 11 1 12222233345
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCC
Q 016868 185 TKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNL 226 (381)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~ 226 (381)
++.|+++++. +.+...++...+.+.|+ +++|.+.
T Consensus 67 ~~~Divf~a~-------~~~~s~~~~~~~~~~G~-~VID~Ss 100 (347)
T PRK06728 67 EGVDIAFFSA-------GGEVSRQFVNQAVSSGA-IVIDNTS 100 (347)
T ss_pred cCCCEEEECC-------ChHHHHHHHHHHHHCCC-EEEECch
Confidence 6788876542 23455566666777775 5578753
No 151
>PTZ00300 pyruvate kinase; Provisional
Probab=22.24 E-value=7.8e+02 Score=24.42 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=48.6
Q ss_pred hhcCCccEEEEccccc----cCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CCCHHHHHHHHHHHhhhCCEEec
Q 016868 182 SLITKAKIFHYGSISL----ITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPL----WPSADKAREGILSIWETADIIKI 253 (381)
Q Consensus 182 ~~i~~~~~~~~~~~~~----~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~----~~~~~~~~~~~~~~l~~~dvl~~ 253 (381)
+.++.+|.++++-.-+ ..+..+....++++.|++.|+++++-.+.-..+ .+.+.+.-+.-..++..+|-+.+
T Consensus 206 eI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavML 285 (454)
T PTZ00300 206 SIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVML 285 (454)
T ss_pred HHHHhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEE
Confidence 4567788887753212 233345667788999999999999865311110 11234455555567889999988
Q ss_pred CHHHH
Q 016868 254 SEEEI 258 (381)
Q Consensus 254 N~~E~ 258 (381)
+.+-+
T Consensus 286 S~ETA 290 (454)
T PTZ00300 286 SGETA 290 (454)
T ss_pred echhc
Confidence 77654
No 152
>PRK05973 replicative DNA helicase; Provisional
Probab=21.90 E-value=5.7e+02 Score=22.76 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCC
Q 016868 96 PANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQ 175 (381)
Q Consensus 96 ~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 175 (381)
+.+.+...++-|.++.+++.=- ..+.+.+.+...|++.+... . . +.+...+. +.
T Consensus 81 alqfa~~~a~~Ge~vlyfSlEe---s~~~i~~R~~s~g~d~~~~~-----~--~-~~~d~~d~---------------~~ 134 (237)
T PRK05973 81 GLELAVEAMKSGRTGVFFTLEY---TEQDVRDRLRALGADRAQFA-----D--L-FEFDTSDA---------------IC 134 (237)
T ss_pred HHHHHHHHHhcCCeEEEEEEeC---CHHHHHHHHHHcCCChHHhc-----c--c-eEeecCCC---------------CC
Confidence 4566776767799999997532 35677888888888754321 0 0 01000000 11
Q ss_pred hhccchhhc--CCccEEEEccccccCc-----hhHHHHHHHHHHHHHCCCeEEEeCC
Q 016868 176 EAELDLSLI--TKAKIFHYGSISLITE-----PCKSAHIAAAKAAKDAGVVLSYDPN 225 (381)
Q Consensus 176 ~~~l~~~~i--~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~a~~~g~~v~~D~~ 225 (381)
.+.+-...+ .+.+.++++++..+.. ........+...+++.|+++++--+
T Consensus 135 ~~~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQ 191 (237)
T PRK05973 135 ADYIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQ 191 (237)
T ss_pred HHHHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 111111111 2468888888765421 1123334566788999999887543
No 153
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=21.72 E-value=3.6e+02 Score=26.35 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=29.1
Q ss_pred cCCChHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCC
Q 016868 91 APGGAPANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVN 135 (381)
Q Consensus 91 ~~GG~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~ 135 (381)
-.|+.|.-+|..|+..|.+|.++..-..+.. +...+.|.+.|++
T Consensus 12 G~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~~l~~~~~~ 55 (450)
T PRK14106 12 GAGVSGLALAKFLKKLGAKVILTDEKEEDQL-KEALEELGELGIE 55 (450)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCchHHH-HHHHHHHHhcCCE
Confidence 4567788999999999999988765322222 2233456666654
No 154
>PRK05968 hypothetical protein; Provisional
Probab=21.55 E-value=7.2e+02 Score=23.79 Aligned_cols=23 Identities=35% Similarity=0.257 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCC
Q 016868 204 SAHIAAAKAAKDAGVVLSYDPNL 226 (381)
Q Consensus 204 ~~~~~~l~~a~~~g~~v~~D~~~ 226 (381)
.-+.++.+.++++|+++++|-..
T Consensus 164 ~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 164 QDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred HHHHHHHHHHHHcCCEEEEECCC
Confidence 34557778888899999999753
No 155
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=21.44 E-value=2e+02 Score=20.67 Aligned_cols=36 Identities=14% Similarity=0.029 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCC
Q 016868 98 NVAVGIARLGGSSAFIGKVGADEFGYMLADILKENN 133 (381)
Q Consensus 98 NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~g 133 (381)
=.+....++|.++.|.++-..|-..+.+++.|.+.|
T Consensus 23 L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kg 58 (77)
T TIGR03853 23 LKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKG 58 (77)
T ss_pred HHHHHHHHhCCCceEeecccccCCHHHHHHHHHHCC
Confidence 355667899999999999999988999999999887
No 156
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=21.34 E-value=4.7e+02 Score=25.42 Aligned_cols=50 Identities=18% Similarity=0.097 Sum_probs=29.6
Q ss_pred ccccCCChHHHHHHHHHHc--CCceEEEee-cCCChHHHHHHHHHHHCCCCCCCe
Q 016868 88 FKKAPGGAPANVAVGIARL--GGSSAFIGK-VGADEFGYMLADILKENNVNGAGM 139 (381)
Q Consensus 88 ~~~~~GG~~~NvA~~la~L--G~~v~li~~-vG~D~~g~~i~~~l~~~gi~~~~v 139 (381)
....+-|.++-.+..++-+ |..+.+... .|. .-+.+...+++.||++.++
T Consensus 81 ~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~--t~~~~~~~l~~~gi~~~~~ 133 (396)
T COG0626 81 AFAFSSGMAAISTALLALLKAGDHVLLPDDLYGG--TYRLFEKILQKFGVEVTFV 133 (396)
T ss_pred EEEecCcHHHHHHHHHHhcCCCCEEEecCCccch--HHHHHHHHHHhcCeEEEEE
Confidence 4556777777666555555 555544443 232 2345667778888876643
No 157
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=21.25 E-value=1.6e+02 Score=29.33 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCHHHHhhccCCCCCChHHHHHHHHhcCCCE
Q 016868 204 SAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISEEEISFLTQGEDPYDDAVVYKLFHANLKL 283 (381)
Q Consensus 204 ~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~~E~~~l~~~~~~~~~~~~~~l~~~g~~~ 283 (381)
..-.++.+..+++|.++=.|-. ...+-...+..-+.++.++..++++++.|--+ .|+..+.+..-+.++.|.+.|...
T Consensus 116 ~~~~~i~~l~~~yGl~vdp~~~-V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTa-VLTP~E~~~lf~~l~~l~~~G~tI 193 (501)
T COG3845 116 QARARIKELSERYGLPVDPDAK-VADLSVGEQQRVEILKALYRGARLLILDEPTA-VLTPQEADELFEILRRLAAEGKTI 193 (501)
T ss_pred HHHHHHHHHHHHhCCCCCccce-eecCCcchhHHHHHHHHHhcCCCEEEEcCCcc-cCCHHHHHHHHHHHHHHHHCCCEE
Confidence 4445666667778866533321 11111223455678888999999999987622 232222211123456777788888
Q ss_pred EEEEe
Q 016868 284 LLVTE 288 (381)
Q Consensus 284 vvvt~ 288 (381)
++||+
T Consensus 194 i~ITH 198 (501)
T COG3845 194 IFITH 198 (501)
T ss_pred EEEec
Confidence 88885
No 158
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=21.22 E-value=4.2e+02 Score=25.14 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=16.5
Q ss_pred HHHHHHHHHHCCCeEEEeCCC
Q 016868 206 HIAAAKAAKDAGVVLSYDPNL 226 (381)
Q Consensus 206 ~~~~l~~a~~~g~~v~~D~~~ 226 (381)
+.++.+.++++|+.+++|-..
T Consensus 144 l~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 144 IEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 346777888999999999753
No 159
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=21.14 E-value=7e+02 Score=23.95 Aligned_cols=94 Identities=16% Similarity=0.132 Sum_probs=52.1
Q ss_pred ceEEEeecCCChHHHHHHH-HHHHCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccc-hhhcCC
Q 016868 109 SSAFIGKVGADEFGYMLAD-ILKENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELD-LSLITK 186 (381)
Q Consensus 109 ~v~li~~vG~D~~g~~i~~-~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~-~~~i~~ 186 (381)
++.++|.-| ..|+.+++ .|.+..+....+......+. |.+...+ ++ .. ....++. .+.+.+
T Consensus 3 ~VAIVGATG--~vG~ell~llL~~~~f~~~~l~~~ss~~s----------g~~~~~f-~g--~~--~~v~~~~~~~~~~~ 65 (369)
T PRK06598 3 KVGFVGWRG--MVGSVLMQRMVEENDFDLIEPVFFSTSQA----------GGAAPSF-GG--KE--GTLQDAFDIDALKK 65 (369)
T ss_pred EEEEEeCCC--HHHHHHHHHHHhCCCCCcCcEEEecchhh----------CCccccc-CC--Cc--ceEEecCChhHhcC
Confidence 466777776 47999997 88888887555544332222 2222111 01 00 0111111 234567
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHCCCe-EEEeCCC
Q 016868 187 AKIFHYGSISLITEPCKSAHIAAAKAAKDAGVV-LSYDPNL 226 (381)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~-v~~D~~~ 226 (381)
+|+++++. +.+...++...+.+.|.+ +++|.+.
T Consensus 66 ~Divf~a~-------~~~~s~~~~~~~~~aG~~~~VID~Ss 99 (369)
T PRK06598 66 LDIIITCQ-------GGDYTNEVYPKLRAAGWQGYWIDAAS 99 (369)
T ss_pred CCEEEECC-------CHHHHHHHHHHHHhCCCCeEEEECCh
Confidence 88886642 234566777778788875 7889863
No 160
>PRK08401 L-aspartate oxidase; Provisional
Probab=21.07 E-value=1.2e+02 Score=30.12 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=19.4
Q ss_pred CCChHHHHHHHHHHcCCceEEEee
Q 016868 92 PGGAPANVAVGIARLGGSSAFIGK 115 (381)
Q Consensus 92 ~GG~~~NvA~~la~LG~~v~li~~ 115 (381)
.|++|.-.|+.++..|.+|.++.+
T Consensus 9 aG~AGl~AAi~aae~G~~V~liek 32 (466)
T PRK08401 9 GGLAGLTAAISLAKKGFDVTIIGP 32 (466)
T ss_pred ccHHHHHHHHHHHHCCCeEEEEeC
Confidence 577788888888888888888766
No 161
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=20.85 E-value=7.5e+02 Score=23.72 Aligned_cols=93 Identities=11% Similarity=0.041 Sum_probs=51.7
Q ss_pred ceEEEeecCCChHHHHHHHHHH-HCCCCCCCeeecCCCCceEEEEEecCCCCceEEEecCCCccccCChhccch-hhcCC
Q 016868 109 SSAFIGKVGADEFGYMLADILK-ENNVNGAGMRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLQEAELDL-SLITK 186 (381)
Q Consensus 109 ~v~li~~vG~D~~g~~i~~~l~-~~gi~~~~v~~~~~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~i~~ 186 (381)
++.++|.-|- .|+.+++.|. +..+....+..-...+.+ | +...+. + .. ...+++.. +.+.+
T Consensus 2 ~VavvGATG~--VG~~ll~~L~~e~~fp~~~~~~~ss~~s~---------g-~~~~f~-~--~~--~~v~~~~~~~~~~~ 64 (366)
T TIGR01745 2 NVGLVGWRGM--VGSVLMQRMQEERDFDAIRPVFFSTSQLG---------Q-AAPSFG-G--TT--GTLQDAFDIDALKA 64 (366)
T ss_pred eEEEEcCcCH--HHHHHHHHHHhCCCCccccEEEEEchhhC---------C-CcCCCC-C--Cc--ceEEcCcccccccC
Confidence 4667777774 8999999888 667764444333221221 1 111110 0 00 11122222 24567
Q ss_pred ccEEEEccccccCchhHHHHHHHHHHHHHCCCe-EEEeCC
Q 016868 187 AKIFHYGSISLITEPCKSAHIAAAKAAKDAGVV-LSYDPN 225 (381)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~-v~~D~~ 225 (381)
.|++.++. ..+...++...+++.|.+ +++|-.
T Consensus 65 vDivffa~-------g~~~s~~~~p~~~~aG~~~~VIDnS 97 (366)
T TIGR01745 65 LDIIITCQ-------GGDYTNEIYPKLRESGWQGYWIDAA 97 (366)
T ss_pred CCEEEEcC-------CHHHHHHHHHHHHhCCCCeEEEECC
Confidence 88886643 224566777888899974 778875
No 162
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=20.85 E-value=6.2e+02 Score=22.78 Aligned_cols=68 Identities=10% Similarity=0.031 Sum_probs=45.3
Q ss_pred hhccchhhcCCccEEEEccccccCchhHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEecCH
Q 016868 176 EAELDLSLITKAKIFHYGSISLITEPCKSAHIAAAKAAKDAGVVLSYDPNLRLPLWPSADKAREGILSIWETADIIKISE 255 (381)
Q Consensus 176 ~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~~N~ 255 (381)
+.++....-.++|++++....+ ..+.+.++++.++..|..+.+|.. +.++..... --.+|++-.|.
T Consensus 123 ~~qi~~a~~~GAD~VlLi~~~l----~~~~l~~li~~a~~lGl~~lvevh-------~~~E~~~A~---~~gadiIgin~ 188 (260)
T PRK00278 123 PYQIYEARAAGADAILLIVAAL----DDEQLKELLDYAHSLGLDVLVEVH-------DEEELERAL---KLGAPLIGINN 188 (260)
T ss_pred HHHHHHHHHcCCCEEEEEeccC----CHHHHHHHHHHHHHcCCeEEEEeC-------CHHHHHHHH---HcCCCEEEECC
Confidence 3355555667899998765432 236788999999999999999985 222222221 22689998885
Q ss_pred HH
Q 016868 256 EE 257 (381)
Q Consensus 256 ~E 257 (381)
..
T Consensus 189 rd 190 (260)
T PRK00278 189 RN 190 (260)
T ss_pred CC
Confidence 43
No 163
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=20.42 E-value=3.7e+02 Score=20.15 Aligned_cols=60 Identities=7% Similarity=0.087 Sum_probs=33.6
Q ss_pred CCccEEEEccccccCchhHHHHHHHHHHHHHCC---CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCCEEe
Q 016868 185 TKAKIFHYGSISLITEPCKSAHIAAAKAAKDAG---VVLSYDPNLRLPLWPSADKAREGILSIWETADIIK 252 (381)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~g---~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dvl~ 252 (381)
+++|++++.+-........+ ....++.+++.+ .+|++---.. +...+.+.+..+.+|+++
T Consensus 35 e~AD~iiiNTC~V~~~Ae~k-~~~~i~~l~~~~~~~~~ivv~GC~a-------q~~~~~l~~~~p~vd~v~ 97 (98)
T PF00919_consen 35 EEADVIIINTCTVRESAEQK-SRNRIRKLKKLKKPGAKIVVTGCMA-------QRYGEELKKEFPEVDLVV 97 (98)
T ss_pred ccCCEEEEEcCCCCcHHHHH-HHHHHHHHHHhcCCCCEEEEEeCcc-------ccChHHHHhhCCCeEEEe
Confidence 57888887765554443333 334444444443 6666653221 223455667778888875
No 164
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=20.40 E-value=4.1e+02 Score=25.54 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCeEEEeCCC
Q 016868 206 HIAAAKAAKDAGVVLSYDPNL 226 (381)
Q Consensus 206 ~~~~l~~a~~~g~~v~~D~~~ 226 (381)
+.++.+.++++|+.+++|-..
T Consensus 163 l~~I~~la~~~gi~livD~a~ 183 (391)
T TIGR01328 163 MERVCRDAHSQGVKVIVDNTF 183 (391)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 346677788899999999764
No 165
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=20.31 E-value=2e+02 Score=27.89 Aligned_cols=56 Identities=18% Similarity=0.146 Sum_probs=39.7
Q ss_pred ccccCChhccchhhcCCccEEEEcccc--ccCchhHHHHHHHHHHHHHCCCeEEEeCC
Q 016868 170 ADMLLQEAELDLSLITKAKIFHYGSIS--LITEPCKSAHIAAAKAAKDAGVVLSYDPN 225 (381)
Q Consensus 170 ~~~~~~~~~l~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~l~~a~~~g~~v~~D~~ 225 (381)
.+..++.++++...-++.+++.++.-. ...-.+++.+.++.+.|++++..|+.|-.
T Consensus 156 ~~~~~D~~~le~~~t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDev 213 (420)
T KOG0257|consen 156 SDWTLDPEELESKITEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEV 213 (420)
T ss_pred ccccCChHHHHhhccCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhH
Confidence 344466767766666778888876532 12223588899999999999999988854
No 166
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=20.05 E-value=3.9e+02 Score=23.81 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=29.1
Q ss_pred cCCccEEEEccccccCchhHHHHHHHHHHHH-HCCCeEEEeCCC
Q 016868 184 ITKAKIFHYGSISLITEPCKSAHIAAAKAAK-DAGVVLSYDPNL 226 (381)
Q Consensus 184 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~-~~g~~v~~D~~~ 226 (381)
-...|.+.++|-. ....+...++++.+| +.++|+++-|+.
T Consensus 39 ~~GTDaImIGGS~---gvt~~~~~~~v~~ik~~~~lPvilfP~~ 79 (240)
T COG1646 39 EAGTDAIMIGGSD---GVTEENVDNVVEAIKERTDLPVILFPGS 79 (240)
T ss_pred HcCCCEEEECCcc---cccHHHHHHHHHHHHhhcCCCEEEecCC
Confidence 4567999998853 233355667777777 889999999963
No 167
>PRK01215 competence damage-inducible protein A; Provisional
Probab=20.05 E-value=2.8e+02 Score=25.19 Aligned_cols=46 Identities=15% Similarity=0.016 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHcCCceEEEeecCCChHHHHHHHHHHHCCCCCCCeeec
Q 016868 95 APANVAVGIARLGGSSAFIGKVGADEFGYMLADILKENNVNGAGMRFD 142 (381)
Q Consensus 95 ~~~NvA~~la~LG~~v~li~~vG~D~~g~~i~~~l~~~gi~~~~v~~~ 142 (381)
++..++..|..+|.++.....+++|. +.|.+.+++.--+.+.+...
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v~Dd~--~~I~~~l~~a~~~~DlVItt 69 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVVMDDI--EEIVSAFREAIDRADVVVST 69 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCH--HHHHHHHHHHhcCCCEEEEe
Confidence 56788889999999999999999983 33666665542233444443
Done!