Query 016869
Match_columns 381
No_of_seqs 161 out of 1762
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 05:08:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.6 3.2E-08 1.1E-12 80.5 5.7 65 282-346 40-105 (137)
2 3b5d_A Multidrug transporter E 98.3 7.4E-06 2.5E-10 64.0 11.4 67 91-157 38-105 (110)
3 3b5d_A Multidrug transporter E 98.1 1.1E-05 3.7E-10 63.0 9.0 65 282-346 40-105 (110)
4 2i68_A Protein EMRE; transmemb 98.1 7.6E-06 2.6E-10 66.4 8.0 68 90-157 37-105 (137)
5 3l1l_A Arginine/agmatine antip 24.5 52 0.0018 30.8 3.7 23 327-349 409-431 (445)
6 2l2t_A Receptor tyrosine-prote 12.7 1.3E+02 0.0044 18.6 2.2 13 334-346 25-37 (44)
7 2zxe_G FXYD10, phospholemman-l 12.1 1E+02 0.0035 21.3 1.7 18 329-346 25-42 (74)
8 3zux_A Transporter, ASBTNM; tr 10.4 8.7E+02 0.03 21.6 8.3 37 310-346 272-311 (332)
9 2ks1_B Epidermal growth factor 10.0 1.7E+02 0.0058 18.0 2.1 12 334-345 26-37 (44)
10 3rko_J NADH-quinone oxidoreduc 9.3 2.5E+02 0.0087 23.1 3.6 34 313-346 127-162 (184)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.63 E-value=3.2e-08 Score=80.45 Aligned_cols=65 Identities=9% Similarity=0.061 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhhhcchhhHHHHH-hHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhhheecCC
Q 016869 282 SFMFYTLVPFVLKLSGATMLILS-VLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 346 (381)
Q Consensus 282 ~~~~~~l~~~~l~~~~a~~~~~~-~~~~pv~a~i~~~~~~~e~~t~~~~iG~~lil~G~~l~~~~~ 346 (381)
...+|.++.+++++.+..++... ..+.|+++++++++++||++++.+++|+++|++|+++.+..+
T Consensus 40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45566899999999887777654 788899999999999999999999999999999999998654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.31 E-value=7.4e-06 Score=64.03 Aligned_cols=67 Identities=15% Similarity=0.303 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhhccchhhHHHh-hcChhHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHhhccc
Q 016869 91 FVDVQGNFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (381)
Q Consensus 91 ~~~~~~~~~~~~al~~~~~~~~~il-~~~~pi~~~lls~~~l~er~~~~~~~gi~l~~~Gv~l~~~~~ 157 (381)
++.....+++..++++.|.+.+..+ ..+.|+++.+++++++||++++.|++|+.+.+.|++.+...+
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3334456777889999999988777 899999999999999999999999999999999999987653
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.14 E-value=1.1e-05 Score=63.03 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhhhcchhhHHH-HHhHHHHHHHHHHHHHhhcccccHHHHHHHHHHHhhhhheecCC
Q 016869 282 SFMFYTLVPFVLKLSGATMLI-LSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 346 (381)
Q Consensus 282 ~~~~~~l~~~~l~~~~a~~~~-~~~~~~pv~a~i~~~~~~~e~~t~~~~iG~~lil~G~~l~~~~~ 346 (381)
...++.++.+++|+.+..++- +.....|+++.+++++++||++|+.+++|..+|+.|+++.+..+
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 455668888899997777665 44678889999999999999999999999999999999987643
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.12 E-value=7.6e-06 Score=66.38 Aligned_cols=68 Identities=15% Similarity=0.277 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhccchhhHHHh-hcChhHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHhhccc
Q 016869 90 GFVDVQGNFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (381)
Q Consensus 90 g~~~~~~~~~~~~al~~~~~~~~~il-~~~~pi~~~lls~~~l~er~~~~~~~gi~l~~~Gv~l~~~~~ 157 (381)
.++.....++++.++++.+++.+..+ .++.|++++++++++++|++++.|++|+.+.++|++++...+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33444457778999999999988777 899999999999999999999999999999999999987643
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=24.48 E-value=52 Score=30.80 Aligned_cols=23 Identities=13% Similarity=0.301 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhhheecCCCCC
Q 016869 327 TYYLAFAAVLIGLIIYSTTAKDL 349 (381)
Q Consensus 327 ~~~iG~~lil~G~~l~~~~~~~~ 349 (381)
..+.|...++.|+.+|...++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 34557788888888887655443
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=12.72 E-value=1.3e+02 Score=18.57 Aligned_cols=13 Identities=15% Similarity=0.263 Sum_probs=5.7
Q ss_pred HHHhhhhheecCC
Q 016869 334 AVLIGLIIYSTTA 346 (381)
Q Consensus 334 lil~G~~l~~~~~ 346 (381)
++..+.+++.+.+
T Consensus 25 ii~~~~~~~~RRR 37 (44)
T 2l2t_A 25 IVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3434444454443
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=12.07 E-value=1e+02 Score=21.25 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=10.3
Q ss_pred HHHHHHHHhhhhheecCC
Q 016869 329 YLAFAAVLIGLIIYSTTA 346 (381)
Q Consensus 329 ~iG~~lil~G~~l~~~~~ 346 (381)
++++++.++|+++....+
T Consensus 25 ifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHHHHcCc
Confidence 445555666766665544
No 8
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=10.41 E-value=8.7e+02 Score=21.62 Aligned_cols=37 Identities=11% Similarity=-0.068 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhccccc---HHHHHHHHHHHhhhhheecCC
Q 016869 310 MWAVILRIFCYHQQVN---WTYYLAFAAVLIGLIIYSTTA 346 (381)
Q Consensus 310 v~a~i~~~~~~~e~~t---~~~~iG~~lil~G~~l~~~~~ 346 (381)
-.++.++...|++.+. +..+-+..-.+.|.++..+.+
T Consensus 272 ~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~ 311 (332)
T 3zux_A 272 GLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWA 311 (332)
T ss_dssp HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666753321 222333344445555555443
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=9.99 E-value=1.7e+02 Score=18.00 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=5.0
Q ss_pred HHHhhhhheecC
Q 016869 334 AVLIGLIIYSTT 345 (381)
Q Consensus 334 lil~G~~l~~~~ 345 (381)
++..+.+++.+.
T Consensus 26 ii~~~~~~~~RR 37 (44)
T 2ks1_B 26 VVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhh
Confidence 333444444443
No 10
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=9.35 E-value=2.5e+02 Score=23.08 Aligned_cols=34 Identities=6% Similarity=-0.089 Sum_probs=24.4
Q ss_pred HHHHHHhhcccccHHHHHHHHHHH--hhhhheecCC
Q 016869 313 VILRIFCYHQQVNWTYYLAFAAVL--IGLIIYSTTA 346 (381)
Q Consensus 313 ~i~~~~~~~e~~t~~~~iG~~lil--~G~~l~~~~~ 346 (381)
--+|..++++-.-+.++.+..+.+ +|.+...+++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~ 162 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREE 162 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356778889999999999987764 4555555443
Done!