Query 016869
Match_columns 381
No_of_seqs 161 out of 1762
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 05:08:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016869.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016869hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 57.8 52 0.0038 27.8 17.5 39 165-204 56-94 (447)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 32.0 23 0.0016 17.5 2.7 19 169-187 2-20 (27)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 15.8 2.2E+02 0.016 22.6 7.5 63 85-151 4-66 (248)
4 d1iwga8 f.35.1.1 (A:513-566,A: 6.9 2.1E+02 0.015 22.0 4.2 31 310-341 95-125 (222)
5 d1q90a3 f.23.23.1 (A:248-292) 6.5 1.2E+02 0.0087 17.1 1.7 34 168-201 4-37 (45)
6 d1pv7a_ f.38.1.2 (A:) Lactose 5.7 5.9E+02 0.043 19.6 12.2 28 175-202 265-292 (417)
7 d1vf5c3 f.23.23.1 (C:250-286) 3.7 3.6E+02 0.026 14.4 2.9 29 168-196 5-33 (37)
8 d1iwga7 f.35.1.1 (A:7-37,A:331 3.4 3.5E+02 0.026 20.1 3.1 30 310-339 77-106 (199)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 3.0 2.2E+02 0.016 18.4 1.3 17 333-349 29-45 (91)
10 d1kqfb2 f.23.22.1 (B:246-290) 2.9 4.1E+02 0.03 14.9 2.2 27 318-344 6-32 (45)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=57.81 E-value=52 Score=27.76 Aligned_cols=39 Identities=18% Similarity=-0.020 Sum_probs=22.8
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q 016869 165 GSRPLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCM 204 (381)
Q Consensus 165 ~~~~~~G~ll~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~ 204 (381)
.+....|.+. -+..+.+++......++.++.++......
T Consensus 56 ~s~~~~g~~~-s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 94 (447)
T d1pw4a_ 56 FSRGDLGFAL-SGISIAYGFSKFIMGSVSDRSNPRVFLPA 94 (447)
T ss_dssp TCSSCHHHHH-HHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 3444466543 34455666666677777777776654443
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=31.97 E-value=23 Score=17.55 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 016869 169 LLGDILVIAGAIFFAMSYV 187 (381)
Q Consensus 169 ~~G~ll~l~a~~~~a~~~v 187 (381)
..|.+..-+++++||.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 3688888899999998754
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=15.75 E-value=2.2e+02 Score=22.61 Aligned_cols=63 Identities=11% Similarity=0.188 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHhhcChhHHHHHHHHHHhcccccHHHHHHHHHHHhhhH
Q 016869 85 WYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLG 151 (381)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~~~lls~~~l~er~~~~~~~gi~l~~~Gv~ 151 (381)
++.++|+++.+..+.....+...+...+.+ ..+.+.++-++++.+|.-+.+++-=.++++.+.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCccceehhhhHHHHHHHH
Confidence 345667777666555555555444433333 234566777888888888877765544444443
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.93 E-value=2.1e+02 Score=21.97 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHhhhhh
Q 016869 310 MWAVILRIFCYHQQVNWTYYLAFAAVLIGLII 341 (381)
Q Consensus 310 v~a~i~~~~~~~e~~t~~~~iG~~lil~G~~l 341 (381)
+.+.+.+..+.+.+++....+|.++. +|+..
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l-~Gi~v 125 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTT-IGLSA 125 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccch-hhhhh
Confidence 55677788889999999998888776 44433
No 5
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.47 E-value=1.2e+02 Score=17.15 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccCChhHH
Q 016869 168 PLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEV 201 (381)
Q Consensus 168 ~~~G~ll~l~a~~~~a~~~v~~~~~~~~~~~~~~ 201 (381)
...|.+..+++.+..-+..++-||...++...++
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEKVQ~aEm 37 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEKVQLAEM 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568777777777777888888877766554433
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.75 E-value=5.9e+02 Score=19.57 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhHHH
Q 016869 175 VIAGAIFFAMSYVGEEFLVKKIDRVEVV 202 (381)
Q Consensus 175 ~l~a~~~~a~~~v~~~~~~~~~~~~~~~ 202 (381)
.....+..........+..+|.+.....
T Consensus 265 ~~~~~~~~~~~~~~~~~l~~r~~~~~~~ 292 (417)
T d1pv7a_ 265 TTMGELLNASIMFFAPLIINRIGGKNAL 292 (417)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHCHHHHH
T ss_pred ccccccccccchhhhhhhhcccccccch
Confidence 3344444445555555565655554433
No 7
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.70 E-value=3.6e+02 Score=14.37 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 016869 168 PLLGDILVIAGAIFFAMSYVGEEFLVKKI 196 (381)
Q Consensus 168 ~~~G~ll~l~a~~~~a~~~v~~~~~~~~~ 196 (381)
...|.+..+.+....=+..++-||...+.
T Consensus 5 Rv~gl~~F~~~v~laQi~lVlKKKQ~EkV 33 (37)
T d1vf5c3 5 RVKWMIAFICLVMLAQLMLILKKKQVEKV 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45676666666666666677666655554
No 8
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.35 E-value=3.5e+02 Score=20.06 Aligned_cols=30 Identities=7% Similarity=0.044 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHhhh
Q 016869 310 MWAVILRIFCYHQQVNWTYYLAFAAVLIGL 339 (381)
Q Consensus 310 v~a~i~~~~~~~e~~t~~~~iG~~lil~G~ 339 (381)
+........++|.+++.....+..+.+...
T Consensus 77 i~~~~~~m~~~g~~l~~~s~~~~~i~igi~ 106 (199)
T d1iwga7 77 LLGTFAVLAAFGFSINTLTMFGMVLAIGLL 106 (199)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHHHh
Confidence 666666778889999988888777765443
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.99 E-value=2.2e+02 Score=18.44 Aligned_cols=17 Identities=6% Similarity=-0.246 Sum_probs=9.3
Q ss_pred HHHHhhhhheecCCCCC
Q 016869 333 AAVLIGLIIYSTTAKDL 349 (381)
Q Consensus 333 ~lil~G~~l~~~~~~~~ 349 (381)
.+++.|.+++...+.|+
T Consensus 29 ~v~V~~~~~~~~~ryR~ 45 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRA 45 (91)
T ss_dssp TTHHHHHHHTTTTTTTT
T ss_pred HHHHHHHHHhhheeeec
Confidence 34455666666655443
No 10
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=2.90 E-value=4.1e+02 Score=14.90 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=18.6
Q ss_pred HhhcccccHHHHHHHHHHHhhhhheec
Q 016869 318 FCYHQQVNWTYYLAFAAVLIGLIIYST 344 (381)
Q Consensus 318 ~~~~e~~t~~~~iG~~lil~G~~l~~~ 344 (381)
-+++....+...+|+....++.++...
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fHYv 32 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFHYI 32 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 455677777788888777777666544
Done!