Your job contains 1 sequence.
>016870
MTYDGFPPFISAQLHYLINHFAHPVRVEQAWSGSKYSNTLDRFTLLIPYCLDTIKWDVIY
NAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRD
QYMSYQRKRVGEVDDDRLKFEICTMLSREGIEMHMSSGVEKPEEVKFAVPLMDMNINKMV
VGCPWRHPQKISLQVIYPVNRKYVSAPSAPHLKLMSTPALKSLFSVDDVKLPPWLDGMCM
AEYLPHLEEALERQVSEAVSLIEVRRRFIEALAPLFGRPIETDSVFYRKSMFFVASGAFS
FLVLFFLSTQFPKQQPSLMLQSSMYFNSQGMPIKSPLLTDYPWSPRWEHSQMAERTFEFL
VDESVNFKKYCNEAQLQQNQH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016870
(381 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2162331 - symbol:AT5G42470 "AT5G42470" species... 1300 1.3e-132 1
UNIPROTKB|Q9NXR7 - symbol:BRE "BRCA1-A complex subunit BR... 341 5.4e-31 1
UNIPROTKB|Q8WN70 - symbol:BRE "BRCA1-A complex subunit BR... 341 5.4e-31 1
UNIPROTKB|Q6GPL9 - symbol:bre "BRCA1-A complex subunit BR... 340 6.9e-31 1
UNIPROTKB|Q6SP92 - symbol:Bre "BRCA1-A complex subunit BR... 340 6.9e-31 1
UNIPROTKB|Q8WN69 - symbol:BRE "BRCA1-A complex subunit BR... 340 6.9e-31 1
UNIPROTKB|A6QQW8 - symbol:BRE "BRCA1-A complex subunit BR... 339 8.8e-31 1
UNIPROTKB|Q5REX9 - symbol:BRE "BRCA1-A complex subunit BR... 338 1.1e-30 1
RGD|735111 - symbol:Bre "brain and reproductive organ-exp... 338 1.1e-30 1
UNIPROTKB|Q5ZML0 - symbol:BRE "BRCA1-A complex subunit BR... 337 1.4e-30 1
MGI|MGI:1333875 - symbol:Bre "brain and reproductive orga... 337 1.4e-30 1
ZFIN|ZDB-GENE-050417-299 - symbol:bre "brain and reproduc... 335 2.3e-30 1
UNIPROTKB|Q6DJ78 - symbol:bre "BRCA1-A complex subunit BR... 203 3.4e-29 2
UNIPROTKB|B6NXD5 - symbol:BRE "BRCA1-A complex subunit BR... 305 3.5e-27 1
UNIPROTKB|E1BS09 - symbol:BRE "BRCA1-A complex subunit BR... 265 6.1e-23 1
UNIPROTKB|C9J2G0 - symbol:BRE "BRCA1-A complex subunit BR... 203 7.2e-16 1
UNIPROTKB|F8W733 - symbol:BRE "BRCA1-A complex subunit BR... 205 2.6e-15 1
UNIPROTKB|I3LJH0 - symbol:LOC100623966 "Uncharacterized p... 147 1.1e-09 1
>TAIR|locus:2162331 [details] [associations]
symbol:AT5G42470 "AT5G42470" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002688
GenomeReviews:BA000015_GR eggNOG:NOG71563 KO:K12173 OMA:FKTFVPQ
InterPro:IPR010358 Pfam:PF06113 EMBL:BT015735 EMBL:BT020175
IPI:IPI00539083 RefSeq:NP_199062.2 UniGene:At.30170 IntAct:Q5XF81
PaxDb:Q5XF81 PRIDE:Q5XF81 EnsemblPlants:AT5G42470.1 GeneID:834254
KEGG:ath:AT5G42470 TAIR:At5g42470 HOGENOM:HOG000030642
InParanoid:Q5XF81 PhylomeDB:Q5XF81 ProtClustDB:CLSN2681085
Genevestigator:Q5XF81 Uniprot:Q5XF81
Length = 382
Score = 1300 (462.7 bits), Expect = 1.3e-132, P = 1.3e-132
Identities = 242/381 (63%), Positives = 302/381 (79%)
Query: 1 MTYDGFPPFISAQLHYLINHFAHPVRVEQAWSGSKYS-NTLDRFTLLIPYCLDTIKWDVI 59
M ++ FPP I+ QLHYL+NH +++ WSG+K + LDRFTL+IPYCL+TIKWDVI
Sbjct: 1 MAFEEFPPLIADQLHYLLNHSPDSIKIANVWSGNKINPKILDRFTLVIPYCLETIKWDVI 60
Query: 60 YNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSR--SIKNSLATWNNKDPTRLLALIWE 117
YN+E+ PPD +FGP+DEDF P + D + S++ +L+ W+++D TRLL +I
Sbjct: 61 YNSEYAMDPPDFVFGPDDEDFVPCKCSAIAPDDDQISSLEKALSEWDHEDSTRLLVIIQG 120
Query: 118 LRDQYMSYQRKRVGEVDDDRLKFEICTMLSREGIEMHMSSGVEKPEEVKFAVPL-MDMNI 176
LRDQY++YQR+RVG+VDDDR+KFEI T+L+R+GIEM M+SGV+KPEEVKFAVPL MDMNI
Sbjct: 121 LRDQYVAYQRRRVGQVDDDRVKFEISTVLTRKGIEMQMASGVDKPEEVKFAVPLVMDMNI 180
Query: 177 NKMVVGCPWRHPQKISLQVIYPVNRKYVSAPSAPHLKLMSTPALKSLFSVDDVKLPPWLD 236
NKMVVGCPW+H QKI LQV+YP+ RKY +APSAP LKL+S LKSLFSV+DVKL PW+D
Sbjct: 181 NKMVVGCPWKHQQKIYLQVVYPILRKYEAAPSAPRLKLVSYYDLKSLFSVEDVKLSPWMD 240
Query: 237 GMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIEALAPLFGRPIETDSVFYRKSMFFVAS 296
GMC+AEYLPHLEE LERQ+ EAV+ I++RR FIEAL+ GRP+E D F RK+ F AS
Sbjct: 241 GMCLAEYLPHLEETLERQIHEAVAAIDLRRSFIEALSLNLGRPLEADPTFCRKATFLNAS 300
Query: 297 GAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQGMPIKSPLLTDYPWSPRWEHSQMAERT 356
G F+F+V FF STQFPKQQP+LMLQS + N +P+KS LLT+YPWSPRWE +MAER
Sbjct: 301 GQFTFMVHFFFSTQFPKQQPTLMLQSCQHLNQSSVPVKSNLLTEYPWSPRWEVGRMAERL 360
Query: 357 FEFLVDESVNFKKYCNEAQLQ 377
+FL DE+VNFKKYCNEA LQ
Sbjct: 361 CDFLTDEAVNFKKYCNEALLQ 381
>UNIPROTKB|Q9NXR7 [details] [associations]
symbol:BRE "BRCA1-A complex subunit BRE" species:9606 "Homo
sapiens" [GO:0006915 "apoptotic process" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0070552 "BRISC complex"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0000268 "peroxisome targeting sequence binding"
evidence=TAS] [GO:0000152 "nuclear ubiquitin ligase complex"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005164 "tumor necrosis factor receptor binding"
evidence=IDA] [GO:0031572 "G2 DNA damage checkpoint" evidence=IMP]
[GO:0045739 "positive regulation of DNA repair" evidence=IMP]
[GO:0010212 "response to ionizing radiation" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0031593
"polyubiquitin binding" evidence=IDA] [GO:0070531 "BRCA1-A complex"
evidence=IDA] [GO:0007165 "signal transduction" evidence=TAS]
GO:GO:0005737 GO:GO:0006915 GO:GO:0007165 EMBL:CH471053
GO:GO:0016568 GO:GO:0010212 GO:GO:0006302 GO:GO:0031593
GO:GO:0045739 GO:GO:0031572 GO:GO:0070531 GO:GO:0070552
GO:GO:0000152 CTD:9577 eggNOG:NOG71563 KO:K12173 OMA:FKTFVPQ
OrthoDB:EOG4G7BZD InterPro:IPR010358 Pfam:PF06113 EMBL:L38616
EMBL:AF420605 EMBL:AY438031 EMBL:AF015767 EMBL:AF420602
EMBL:AF420603 EMBL:AK000097 EMBL:AK291086 EMBL:AC021171
EMBL:AC093690 EMBL:AC096552 EMBL:BC001251 IPI:IPI00149276
IPI:IPI00164724 IPI:IPI00446802 IPI:IPI00719447 PIR:JC2472
RefSeq:NP_001248769.1 RefSeq:NP_004890.2 RefSeq:NP_954661.1
RefSeq:NP_954662.1 RefSeq:NP_954663.1 RefSeq:NP_954664.1
UniGene:Hs.258314 ProteinModelPortal:Q9NXR7 IntAct:Q9NXR7
MINT:MINT-2867020 STRING:Q9NXR7 PhosphoSite:Q9NXR7 DMDM:229462810
PaxDb:Q9NXR7 PRIDE:Q9NXR7 DNASU:9577 Ensembl:ENST00000342045
Ensembl:ENST00000344773 Ensembl:ENST00000361704
Ensembl:ENST00000379624 Ensembl:ENST00000379632 GeneID:9577
KEGG:hsa:9577 UCSC:uc002rlp.1 UCSC:uc002rlq.3 UCSC:uc002rlr.3
UCSC:uc002rls.3 GeneCards:GC02P028025 HGNC:HGNC:1106 HPA:HPA017926
MIM:610497 neXtProt:NX_Q9NXR7 PharmGKB:PA25419 HOVERGEN:HBG071492
InParanoid:Q9NXR7 ChiTaRS:BRE GenomeRNAi:9577 NextBio:35917
ArrayExpress:Q9NXR7 Bgee:Q9NXR7 CleanEx:HS_BRE
Genevestigator:Q9NXR7 GermOnline:ENSG00000158019 GO:GO:0000268
GO:GO:0005164 Uniprot:Q9NXR7
Length = 383
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 102/326 (31%), Positives = 163/326 (50%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D +++N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALQN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE--GIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L V+ + A +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVAL---LSVSFEDTEATQV-Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG + E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAER 355
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKR 361
>UNIPROTKB|Q8WN70 [details] [associations]
symbol:BRE "BRCA1-A complex subunit BRE" species:9490
"Saguinus oedipus" [GO:0005634 "nucleus" evidence=ISS] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0031572 "G2 DNA damage
checkpoint" evidence=ISS] [GO:0031593 "polyubiquitin binding"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0070531 "BRCA1-A complex" evidence=ISS]
[GO:0070552 "BRISC complex" evidence=ISS] GO:GO:0005737
GO:GO:0006915 GO:GO:0016568 GO:GO:0010212 GO:GO:0006302
GO:GO:0031593 GO:GO:0045739 GO:GO:0031572 GO:GO:0070531
GO:GO:0070552 InterPro:IPR010358 Pfam:PF06113 EMBL:AF440753
ProteinModelPortal:Q8WN70 PRIDE:Q8WN70 Uniprot:Q8WN70
Length = 383
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 102/326 (31%), Positives = 163/326 (50%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D +++N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALQN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE--GIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L V+ + A +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVAL---LSVSFEDTEATQV-Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG + E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAER 355
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKR 361
>UNIPROTKB|Q6GPL9 [details] [associations]
symbol:bre "BRCA1-A complex subunit BRE" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0031572 "G2 DNA damage
checkpoint" evidence=ISS] [GO:0031593 "polyubiquitin binding"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0070531 "BRCA1-A complex" evidence=ISS]
[GO:0070552 "BRISC complex" evidence=ISS] GO:GO:0005737
GO:GO:0006915 GO:GO:0016568 GO:GO:0010212 GO:GO:0006302
GO:GO:0031593 GO:GO:0045739 GO:GO:0031572 GO:GO:0070531
GO:GO:0070552 CTD:9577 KO:K12173 InterPro:IPR010358 Pfam:PF06113
EMBL:BC073095 RefSeq:NP_001085651.1 UniGene:Xl.6907 GeneID:444077
KEGG:xla:444077 Xenbase:XB-GENE-1032926 Uniprot:Q6GPL9
Length = 384
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 98/323 (30%), Positives = 160/323 (49%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA +P PPD IFG ED +F P D ++ N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNASYPELPPDFIFG-EDAEFLP---------DPSALHN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE--GIEMHMSSG 158
+ WN DP LL ++ EL QY YQ R+ E RL FE T+ G+ M + +G
Sbjct: 103 SEWNPSDPECLLLVVKELVQQYHQYQCSRLSE--SSRLMFEYQTLQEEPQYGLNMEIYAG 160
Query: 159 VEKPEEVKFAVP-LMDMNINKMVVGCPW-RHPQKISLQVIYPVNRKYVSAPSAPHL-KLM 215
+ +F+ L+ M ++ + + + + + ++ + A + KL
Sbjct: 161 KKNNWTGEFSARFLLKMPVDFSNIPIYLLKDSNEDPGEDVALLSVSFEDAEATQVFPKLF 220
Query: 216 STPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIEALAP 274
+P ++ +L + +P + G C+ +Y+P + + L +V + RR +I A
Sbjct: 221 LSPRIEHALGGSSALHIPVFPSGSCLIDYVPQVCQLLTNKVQYVIQGYHKRREYIAAFLS 280
Query: 275 LFGRPI-ETDSVFYRKSMFFVASGAFSFLV-LFFLSTQFPKQQPSLMLQSSMYFNSQGMP 332
FG + E D+ + K ++ F FLV L FP+ QP+L QS +F + G
Sbjct: 281 HFGTGVVEYDAEGFTKLTLLLSWKDFCFLVHTVDLPLYFPRDQPTLTFQSVYHFTNSGQ- 339
Query: 333 IKSPLLTDYPWSPRWEHSQMAER 355
+ S +YP+SPRW+ ++MA+R
Sbjct: 340 LYSQAQKNYPYSPRWDGNEMAKR 362
>UNIPROTKB|Q6SP92 [details] [associations]
symbol:Bre "BRCA1-A complex subunit BRE" species:10036
"Mesocricetus auratus" [GO:0005634 "nucleus" evidence=ISS]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0010212
"response to ionizing radiation" evidence=ISS] [GO:0031572 "G2 DNA
damage checkpoint" evidence=ISS] [GO:0031593 "polyubiquitin
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0070531 "BRCA1-A complex" evidence=ISS]
[GO:0070552 "BRISC complex" evidence=ISS] GO:GO:0005737
GO:GO:0006915 GO:GO:0016568 GO:GO:0010212 GO:GO:0006302
GO:GO:0031593 GO:GO:0045739 GO:GO:0031572 GO:GO:0070531
GO:GO:0070552 InterPro:IPR010358 Pfam:PF06113 EMBL:AY454160
Uniprot:Q6SP92
Length = 383
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 102/326 (31%), Positives = 162/326 (49%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +++KWD+I+NA++P PPD IFG ED +F P D ++ N L
Sbjct: 54 DRFKLHIPYAGESLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALHN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE--GIEMHMSSG 158
A+WN DP LL ++ EL QY +Q R+ E RL FE T+L G M + +G
Sbjct: 103 ASWNPSDPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L V+ + A +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVAL---LSVSFEDTEATQV-Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG + E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAER 355
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKR 361
>UNIPROTKB|Q8WN69 [details] [associations]
symbol:BRE "BRCA1-A complex subunit BRE" species:9534
"Chlorocebus aethiops" [GO:0005634 "nucleus" evidence=ISS]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0010212
"response to ionizing radiation" evidence=ISS] [GO:0031572 "G2 DNA
damage checkpoint" evidence=ISS] [GO:0031593 "polyubiquitin
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0070531 "BRCA1-A complex" evidence=ISS]
[GO:0070552 "BRISC complex" evidence=ISS] GO:GO:0005737
GO:GO:0006915 GO:GO:0016568 GO:GO:0010212 GO:GO:0006302
GO:GO:0031593 GO:GO:0045739 GO:GO:0031572 GO:GO:0070531
GO:GO:0070552 InterPro:IPR010358 Pfam:PF06113 EMBL:AF440754
Uniprot:Q8WN69
Length = 383
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 102/326 (31%), Positives = 163/326 (50%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D +++N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDVEFLP---------DPSALQN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE--GIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L V+ + A +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVAL---LSVSFEDTEATQV-Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG + E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAER 355
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKR 361
>UNIPROTKB|A6QQW8 [details] [associations]
symbol:BRE "BRCA1-A complex subunit BRE" species:9913 "Bos
taurus" [GO:0006302 "double-strand break repair" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0070531 "BRCA1-A complex"
evidence=ISS] [GO:0031593 "polyubiquitin binding" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0045739 "positive regulation of DNA repair" evidence=ISS]
[GO:0031572 "G2 DNA damage checkpoint" evidence=ISS] [GO:0070552
"BRISC complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005164 "tumor necrosis factor receptor binding" evidence=IEA]
[GO:0000152 "nuclear ubiquitin ligase complex" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] GO:GO:0005737 GO:GO:0006915
GO:GO:0016568 GO:GO:0010212 GO:GO:0006302 GO:GO:0031593
GO:GO:0045739 GO:GO:0031572 GO:GO:0070531 GO:GO:0070552
GO:GO:0000152 EMBL:BC150022 IPI:IPI00867300 RefSeq:NP_001095744.1
UniGene:Bt.4351 STRING:A6QQW8 PRIDE:A6QQW8
Ensembl:ENSBTAT00000044402 GeneID:614152 KEGG:bta:614152 CTD:9577
eggNOG:NOG71563 GeneTree:ENSGT00390000004208 HOGENOM:HOG000095259
InParanoid:A6QQW8 KO:K12173 OMA:FKTFVPQ OrthoDB:EOG4G7BZD
NextBio:20898968 InterPro:IPR010358 Pfam:PF06113 Uniprot:A6QQW8
Length = 383
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 102/326 (31%), Positives = 162/326 (49%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D ++ N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALHN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE--GIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L V+ + A +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVAL---LSVSFEDTEATQV-Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG + E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAER 355
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKR 361
>UNIPROTKB|Q5REX9 [details] [associations]
symbol:BRE "BRCA1-A complex subunit BRE" species:9601
"Pongo abelii" [GO:0005634 "nucleus" evidence=ISS] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0031572 "G2 DNA damage
checkpoint" evidence=ISS] [GO:0031593 "polyubiquitin binding"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0070531 "BRCA1-A complex" evidence=ISS]
[GO:0070552 "BRISC complex" evidence=ISS] GO:GO:0005737
GO:GO:0006915 GO:GO:0016568 GO:GO:0010212 GO:GO:0006302
GO:GO:0031593 GO:GO:0045739 GO:GO:0031572 GO:GO:0070531
GO:GO:0070552 CTD:9577 HOGENOM:HOG000095259 KO:K12173
InterPro:IPR010358 Pfam:PF06113 EMBL:CR857384 RefSeq:NP_001124759.1
UniGene:Pab.7052 GeneID:100171610 KEGG:pon:100171610
InParanoid:Q5REX9 Uniprot:Q5REX9
Length = 383
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 101/326 (30%), Positives = 163/326 (50%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L +PY +T+KWD+I+NA++P PPD IFG ED +F P D +++N L
Sbjct: 54 DRFKLHMPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALQN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE--GIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L V+ + A +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVAL---LSVSFEDTEATQV-Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG + E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAER 355
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKR 361
>RGD|735111 [details] [associations]
symbol:Bre "brain and reproductive organ-expressed (TNFRSF1A
modulator)" species:10116 "Rattus norvegicus" [GO:0000152 "nuclear
ubiquitin ligase complex" evidence=ISO;ISS] [GO:0005164 "tumor
necrosis factor receptor binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005737 "cytoplasm"
evidence=ISO;ISS] [GO:0006302 "double-strand break repair"
evidence=ISO;ISS] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO;ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISO;ISS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0031572 "G2
DNA damage checkpoint" evidence=ISO;ISS] [GO:0031593 "polyubiquitin
binding" evidence=ISO;ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISO;ISS] [GO:0070531 "BRCA1-A complex"
evidence=ISO;ISS] [GO:0070552 "BRISC complex" evidence=ISO;ISS]
RGD:735111 GO:GO:0005737 GO:GO:0006915 GO:GO:0016568 GO:GO:0010212
GO:GO:0006302 GO:GO:0031593 GO:GO:0045739 GO:GO:0031572
GO:GO:0070531 GO:GO:0070552 GO:GO:0000152 CTD:9577 eggNOG:NOG71563
GeneTree:ENSGT00390000004208 HOGENOM:HOG000095259 KO:K12173
OrthoDB:EOG4G7BZD InterPro:IPR010358 Pfam:PF06113
HOVERGEN:HBG071492 GO:GO:0005164 EMBL:BC061573 IPI:IPI00393563
RefSeq:NP_954891.1 UniGene:Rn.224501 STRING:Q6P7Q1
Ensembl:ENSRNOT00000005855 GeneID:362704 KEGG:rno:362704
NextBio:680940 Genevestigator:Q6P7Q1 GermOnline:ENSRNOG00000004364
Uniprot:Q6P7Q1
Length = 383
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 102/326 (31%), Positives = 162/326 (49%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D ++ N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALHN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE--GIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCGRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L V+ + A +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVAL---LSVSFEDTEATQV-Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG + E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKEFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAER 355
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKR 361
>UNIPROTKB|Q5ZML0 [details] [associations]
symbol:BRE "BRCA1-A complex subunit BRE" species:9031
"Gallus gallus" [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000152 "nuclear ubiquitin ligase
complex" evidence=IEA] [GO:0005164 "tumor necrosis factor receptor
binding" evidence=IEA] [GO:0031593 "polyubiquitin binding"
evidence=ISS] [GO:0070531 "BRCA1-A complex" evidence=ISS]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0070552
"BRISC complex" evidence=ISS] [GO:0031572 "G2 DNA damage
checkpoint" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0010212 "response to ionizing radiation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] GO:GO:0005737
GO:GO:0006915 GO:GO:0016568 GO:GO:0010212 GO:GO:0006302
GO:GO:0031593 GO:GO:0045739 GO:GO:0031572 GO:GO:0070531
GO:GO:0070552 GO:GO:0000152 CTD:9577 eggNOG:NOG71563
GeneTree:ENSGT00390000004208 HOGENOM:HOG000095259 KO:K12173
OMA:FKTFVPQ OrthoDB:EOG4G7BZD InterPro:IPR010358 Pfam:PF06113
EMBL:AJ719374 IPI:IPI00602701 RefSeq:NP_001008458.1
UniGene:Gga.22056 STRING:Q5ZML0 Ensembl:ENSGALT00000016306
GeneID:421417 KEGG:gga:421417 InParanoid:Q5ZML0 NextBio:20824188
ArrayExpress:Q5ZML0 Uniprot:Q5ZML0
Length = 383
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 102/326 (31%), Positives = 161/326 (49%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA +P PPD IFG ED +F P D ++ N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAHYPDLPPDFIFG-EDAEFLP---------DPSALHN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE--GIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L V+ + A
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVAL---LSVSFEDAEATQV-F 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCQLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG + E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLYFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAER 355
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKR 361
>MGI|MGI:1333875 [details] [associations]
symbol:Bre "brain and reproductive organ-expressed protein"
species:10090 "Mus musculus" [GO:0000152 "nuclear ubiquitin ligase
complex" evidence=ISO] [GO:0005164 "tumor necrosis factor receptor
binding" evidence=ISO;IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0031572 "G2
DNA damage checkpoint" evidence=ISO] [GO:0031593 "polyubiquitin
binding" evidence=ISO] [GO:0045739 "positive regulation of DNA
repair" evidence=ISO] [GO:0070531 "BRCA1-A complex" evidence=ISO]
[GO:0070552 "BRISC complex" evidence=ISO] MGI:MGI:1333875
GO:GO:0005737 GO:GO:0006915 GO:GO:0016568 GO:GO:0010212
GO:GO:0006302 GO:GO:0031593 GO:GO:0045739 GO:GO:0031572
GO:GO:0070531 GO:GO:0070552 GO:GO:0000152 CTD:9577 eggNOG:NOG71563
GeneTree:ENSGT00390000004208 KO:K12173 OMA:FKTFVPQ
OrthoDB:EOG4G7BZD InterPro:IPR010358 Pfam:PF06113
HOVERGEN:HBG071492 ChiTaRS:BRE GO:GO:0005164 EMBL:AF440752
EMBL:AF527952 EMBL:AF527953 EMBL:AF527954 EMBL:AF527955
EMBL:AF538925 EMBL:AK050695 EMBL:AK080991 EMBL:AK156929
EMBL:BC061000 EMBL:BC100565 IPI:IPI00128466 IPI:IPI00170162
IPI:IPI00400095 IPI:IPI00400287 IPI:IPI00400376 RefSeq:NP_653124.1
RefSeq:NP_851796.1 RefSeq:NP_851797.1 RefSeq:NP_851798.1
RefSeq:NP_851799.1 UniGene:Mm.482126 STRING:Q8K3W0 PaxDb:Q8K3W0
PRIDE:Q8K3W0 Ensembl:ENSMUST00000063813 Ensembl:ENSMUST00000071531
Ensembl:ENSMUST00000080598 Ensembl:ENSMUST00000114507
Ensembl:ENSMUST00000131995 GeneID:107976 KEGG:mmu:107976
UCSC:uc008wzb.1 UCSC:uc008wzc.1 UCSC:uc008wzd.1 UCSC:uc008wze.1
UCSC:uc008wzf.1 InParanoid:Q8CJ13 NextBio:359811 Bgee:Q8K3W0
CleanEx:MM_BRE Genevestigator:Q8K3W0 GermOnline:ENSMUSG00000052139
Uniprot:Q8K3W0
Length = 383
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 102/326 (31%), Positives = 162/326 (49%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D ++ N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALHN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE--GIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCGRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L V+ + A +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVAL---LSVSFEDTEATQV-Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG + E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAER 355
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKR 361
>ZFIN|ZDB-GENE-050417-299 [details] [associations]
symbol:bre "brain and reproductive organ-expressed
protein" species:7955 "Danio rerio" [GO:0070552 "BRISC complex"
evidence=ISS] [GO:0010212 "response to ionizing radiation"
evidence=ISS] [GO:0031572 "G2 DNA damage checkpoint" evidence=ISS]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0045739
"positive regulation of DNA repair" evidence=ISS] [GO:0031593
"polyubiquitin binding" evidence=ISS] [GO:0070531 "BRCA1-A complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] ZFIN:ZDB-GENE-050417-299
GO:GO:0005737 GO:GO:0006915 GO:GO:0016568 GO:GO:0010212
GO:GO:0006302 GO:GO:0031593 GO:GO:0045739 GO:GO:0031572
GO:GO:0070531 GO:GO:0070552 CTD:9577 eggNOG:NOG71563
HOGENOM:HOG000095259 KO:K12173 OrthoDB:EOG4G7BZD InterPro:IPR010358
Pfam:PF06113 EMBL:BC092902 IPI:IPI00486652 RefSeq:NP_001017777.1
UniGene:Dr.118971 STRING:Q568D5 GeneID:550474 KEGG:dre:550474
InParanoid:Q568D5 NextBio:20879717 ArrayExpress:Q568D5
Uniprot:Q568D5
Length = 386
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 102/323 (31%), Positives = 157/323 (48%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA P PPD IFG ED DF P +E + N L
Sbjct: 57 DRFKLHIPYAGETLKWDIIFNARDPELPPDFIFG-EDADFLPEPSE---------LPN-L 105
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHMSSG 158
+W++ P LL L+ E+ QY YQ +R+ D RL FE ++L G M + +G
Sbjct: 106 VSWDSGKPECLLLLVKEMLQQYHQYQCQRLR--DSSRLLFEYDSLLEDPNYGRNMEIYAG 163
Query: 159 VEKPEEVKFAVPLMDMNINKMVVGCPWRHPQKISLQVIYPVNRKYVSAPSAPHL----KL 214
+ +F+ + + + P + +L V VS A KL
Sbjct: 164 RKNSWTGEFSARFL-LKLPVDFSNIPIYLLKDTALDPGEDVALLSVSFEDAEATQVFPKL 222
Query: 215 MSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIEALA 273
+P+++ +L + +P + G C+ +Y+P + + L +V + RR +I A
Sbjct: 223 YLSPSIEHALGGSSALHIPAFPSGGCLIDYVPQVCQLLTNKVQYVIQGYHKRREYIAAFL 282
Query: 274 PLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQGMP 332
FG + E D+V + K + F FLV L FP+ QP+L QS +F S G
Sbjct: 283 SHFGMGVVEYDAVGFTKLTLLLMWKDFCFLVHVDLPLYFPRDQPTLTFQSIYHFTSSGQ- 341
Query: 333 IKSPLLTDYPWSPRWEHSQMAER 355
+ S + YP+SPRW+ ++MA+R
Sbjct: 342 LYSQVQKSYPYSPRWDGNEMAKR 364
>UNIPROTKB|Q6DJ78 [details] [associations]
symbol:bre "BRCA1-A complex subunit BRE" species:8364
"Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus" evidence=ISS]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0010212
"response to ionizing radiation" evidence=ISS] [GO:0031572 "G2 DNA
damage checkpoint" evidence=ISS] [GO:0031593 "polyubiquitin
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0070531 "BRCA1-A complex" evidence=ISS]
[GO:0070552 "BRISC complex" evidence=ISS] GO:GO:0005737
GO:GO:0006915 GO:GO:0016568 GO:GO:0010212 GO:GO:0006302
GO:GO:0031593 GO:GO:0045739 GO:GO:0031572 GO:GO:0070531
GO:GO:0070552 CTD:9577 eggNOG:NOG71563 HOGENOM:HOG000095259
KO:K12173 OrthoDB:EOG4G7BZD InterPro:IPR010358 Pfam:PF06113
EMBL:BC075305 RefSeq:NP_001005716.1 UniGene:Str.8399 STRING:Q6DJ78
GeneID:448242 KEGG:xtr:448242 Xenbase:XB-GENE-1032920
InParanoid:Q6DJ78 Uniprot:Q6DJ78
Length = 383
Score = 203 (76.5 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 48/105 (45%), Positives = 60/105 (57%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA +P PPD IFG ED +F P D ++ N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNATYPELPPDFIFG-EDAEFLP---------DPSALHN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTM 145
A WN DP LL ++ EL QY YQ R+ E RL FE T+
Sbjct: 103 AEWNPSDPECLLLVVKELVQQYHQYQCSRLSE--SSRLMFEYQTL 145
Score = 184 (69.8 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 44/145 (30%), Positives = 75/145 (51%)
Query: 213 KLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIEA 271
KL +P ++ +L + +P + G C+ +Y+P + + L +V + RR +I A
Sbjct: 218 KLFLSPRIEHALGGSSALHIPAFPSGSCLIDYVPQVCQLLTNKVQYVIQGYHKRREYIAA 277
Query: 272 LAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQG 330
FG + E D+ + K ++ F FLV L FP+ QP+L QS +F + G
Sbjct: 278 FLSHFGTGVVEYDAEGFTKLTLLLSWKDFCFLVHIDLPLYFPRDQPTLTFQSVYHFTNSG 337
Query: 331 MPIKSPLLTDYPWSPRWEHSQMAER 355
+ S +YP+SPRW+ ++MA+R
Sbjct: 338 Q-LYSQAQKNYPYSPRWDGNEMAKR 361
>UNIPROTKB|B6NXD5 [details] [associations]
symbol:BRE "BRCA1-A complex subunit BRE" species:7739
"Branchiostoma floridae" [GO:0005634 "nucleus" evidence=ISS]
[GO:0006302 "double-strand break repair" evidence=ISS] [GO:0010212
"response to ionizing radiation" evidence=ISS] [GO:0031572 "G2 DNA
damage checkpoint" evidence=ISS] [GO:0031593 "polyubiquitin
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0070531 "BRCA1-A complex" evidence=ISS]
[GO:0070552 "BRISC complex" evidence=ISS] GO:GO:0005737
GO:GO:0006915 GO:GO:0016568 GO:GO:0010212 GO:GO:0006302
GO:GO:0031593 GO:GO:0045739 GO:GO:0031572 GO:GO:0070531
GO:GO:0070552 eggNOG:NOG71563 InterPro:IPR010358 Pfam:PF06113
EMBL:ABEP02001063 Uniprot:B6NXD5
Length = 383
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 93/338 (27%), Positives = 165/338 (48%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF + IP+ D++KW+VI+++ P PPD IF E+ +F P D ++N L
Sbjct: 56 DRFKIYIPFAGDSLKWEVIFDSCQPSNPPDFIFLGENGNFDP---------DIEKLEN-L 105
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSREG---IEMHMSS 157
W+ K+P L+ I +L +Y YQ++ + RL+FE ++ E +E+HM +
Sbjct: 106 THWDPKNPESLVLAIEDLMREYRCYQKQLIEGYS--RLQFEYSSLQGMEACDDVEVHMGN 163
Query: 158 GVEKPEE--VKFAVPL-MDMN-INKMVVGCPWRHPQKISLQVIYPVNRKYVSAPSAPHLK 213
+ + V F + L +D++ I + +V P + L V+ + P L
Sbjct: 164 RLPGTLDSPVNFLIRLPIDLSPIPQYLVK---DDPGE-DLAVLLAKFHNSEGSRVTPQL- 218
Query: 214 LMSTPALKSLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIEALA 273
+S +L +++P + G C+ +Y+P +++ L++Q+ V + RR ++ A
Sbjct: 219 FLSPKVEHALGDNTALRIPRFPTGGCLMDYVPQVQDFLQKQIDHIVEGYQRRREYVAAFI 278
Query: 274 PLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFN-SQGM 331
FG + E D+ + K + F F++ L ++FP+ P QS + + + G
Sbjct: 279 SRFGGSVLEYDAESFTKLSLVLEWNEFFFVLHIELPSRFPQDMPVFTFQSCYHLSKTNGE 338
Query: 332 PIKSPLLTDYPWSPRWEHSQMAERTFEFLVDESVNFKK 369
P S + YP+SPRW +MA R F++D FKK
Sbjct: 339 PYVS-VQKSYPYSPRWTGEEMAHRAKLFILDFIPQFKK 375
>UNIPROTKB|E1BS09 [details] [associations]
symbol:BRE "BRCA1-A complex subunit BRE" species:9031
"Gallus gallus" [GO:0000152 "nuclear ubiquitin ligase complex"
evidence=IEA] [GO:0005164 "tumor necrosis factor receptor binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0010212 "response to
ionizing radiation" evidence=IEA] [GO:0031572 "G2 DNA damage
checkpoint" evidence=IEA] [GO:0031593 "polyubiquitin binding"
evidence=IEA] [GO:0045739 "positive regulation of DNA repair"
evidence=IEA] [GO:0070531 "BRCA1-A complex" evidence=IEA]
[GO:0070552 "BRISC complex" evidence=IEA] GO:GO:0005737
GO:GO:0010212 GO:GO:0006302 GO:GO:0045739 GO:GO:0031572
GO:GO:0070531 GO:GO:0070552 GO:GO:0000152
GeneTree:ENSGT00390000004208 InterPro:IPR010358 Pfam:PF06113
EMBL:AADN02011955 IPI:IPI00818920 Ensembl:ENSGALT00000038273
ArrayExpress:E1BS09 Uniprot:E1BS09
Length = 325
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 88/289 (30%), Positives = 138/289 (47%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA +P PPD IFG ED +F P D ++ N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAHYPDLPPDFIFG-EDAEFLP---------DPSALHN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE--GIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L V+ + A
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVAL---LSVSFEDAEATQV-F 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCQLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSL 318
A FG + E D+ + K + F FLV L FP+ QP+L
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLYFPRDQPTL 325
>UNIPROTKB|C9J2G0 [details] [associations]
symbol:BRE "BRCA1-A complex subunit BRE" species:9606 "Homo
sapiens" [GO:0005164 "tumor necrosis factor receptor binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] GO:GO:0005737
HOGENOM:HOG000095259 OrthoDB:EOG4G7BZD InterPro:IPR010358
Pfam:PF06113 EMBL:AC021171 EMBL:AC093690 EMBL:AC096552
HGNC:HGNC:1106 ChiTaRS:BRE EMBL:AC104695 IPI:IPI00877161
ProteinModelPortal:C9J2G0 STRING:C9J2G0 Ensembl:ENST00000436924
ArrayExpress:C9J2G0 Bgee:C9J2G0 Uniprot:C9J2G0
Length = 153
Score = 203 (76.5 bits), Expect = 7.2e-16, P = 7.2e-16
Identities = 47/106 (44%), Positives = 64/106 (60%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D +++N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALQN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTML 146
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLL 146
>UNIPROTKB|F8W733 [details] [associations]
symbol:BRE "BRCA1-A complex subunit BRE" species:9606 "Homo
sapiens" [GO:0005737 "cytoplasm" evidence=IDA] GO:GO:0005737
InterPro:IPR010358 Pfam:PF06113 EMBL:AC021171 EMBL:AC093690
EMBL:AC096552 HGNC:HGNC:1106 ChiTaRS:BRE EMBL:AC104695
IPI:IPI00892695 ProteinModelPortal:F8W733 PRIDE:F8W733
Ensembl:ENST00000379629 ArrayExpress:F8W733 Bgee:F8W733
Uniprot:F8W733
Length = 284
Score = 205 (77.2 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 50/120 (41%), Positives = 69/120 (57%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D +++N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALQN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE--GIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
>UNIPROTKB|I3LJH0 [details] [associations]
symbol:LOC100623966 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005164 "tumor necrosis factor receptor binding"
evidence=IEA] GeneTree:ENSGT00390000004208 InterPro:IPR010358
Pfam:PF06113 EMBL:FP325136 Ensembl:ENSSSCT00000023126
Uniprot:I3LJH0
Length = 148
Score = 147 (56.8 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 40/104 (38%), Positives = 56/104 (53%)
Query: 57 DVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIW 116
D+I+NA++P PPD IFG ED +F P D ++ N LA+WN +P LL ++
Sbjct: 17 DIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALHN-LASWNPSNPECLLLVVK 65
Query: 117 ELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE--GIEMHMSSG 158
EL QY +Q R+ E RL FE T+L G M + +G
Sbjct: 66 ELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 107
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.425 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 381 381 0.00090 117 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 623 (66 KB)
Total size of DFA: 277 KB (2145 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.69u 0.17s 30.86t Elapsed: 00:00:01
Total cpu time: 30.70u 0.17s 30.87t Elapsed: 00:00:01
Start: Thu May 9 22:05:26 2013 End: Thu May 9 22:05:27 2013