BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016870
(381 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DJ78|BRE_XENTR BRCA1-A complex subunit BRE OS=Xenopus tropicalis GN=bre PE=2 SV=1
Length = 383
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 163/330 (49%), Gaps = 31/330 (9%)
Query: 39 TLDRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKN 98
+ DRF L IPY +T+KWD+I+NA +P PPD IFG ED +F P D ++ N
Sbjct: 52 SCDRFKLHIPYAGETLKWDIIFNATYPELPPDFIFG-EDAEFLP---------DPSALHN 101
Query: 99 SLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHMS 156
LA WN DP LL ++ EL QY YQ R+ E RL FE T+ + G M +
Sbjct: 102 -LAEWNPSDPECLLLVVKELVQQYHQYQCSRLSE--SSRLMFEYQTLQEEPQYGENMEIY 158
Query: 157 SGVEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSA 209
+G + +F+ +P+ NI ++ P + ++L ++ + A +
Sbjct: 159 AGKKNNWTGEFSARFLLKLPVDFSNIPIYLLKDSNEDPGEDVAL-----LSVSFEDAEAT 213
Query: 210 PHL-KLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRR 267
KL +P ++ +L + +P + G C+ +Y+P + + L +V + RR
Sbjct: 214 QVFPKLFLSPRIEHALGGSSALHIPAFPSGSCLIDYVPQVCQLLTNKVQYVIQGYHKRRE 273
Query: 268 FIEALAPLFGRP-IETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYF 326
+I A FG +E D+ + K ++ F FLV L FP+ QP+L QS +F
Sbjct: 274 YIAAFLSHFGTGVVEYDAEGFTKLTLLLSWKDFCFLVHIDLPLYFPRDQPTLTFQSVYHF 333
Query: 327 NSQGMPIKSPLLTDYPWSPRWEHSQMAERT 356
+ G + S +YP+SPRW+ ++MA+R
Sbjct: 334 TNSGQ-LYSQAQKNYPYSPRWDGNEMAKRA 362
>sp|Q8WN70|BRE_SAGOE BRCA1-A complex subunit BRE OS=Saguinus oedipus GN=BRE PE=2 SV=1
Length = 383
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 163/327 (49%), Gaps = 29/327 (8%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D +++N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALQN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L + G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L + + + +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQV----Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRP-IETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG +E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAERT 356
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKRA 362
>sp|Q9NXR7|BRE_HUMAN BRCA1-A complex subunit BRE OS=Homo sapiens GN=BRE PE=1 SV=2
Length = 383
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 163/327 (49%), Gaps = 29/327 (8%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D +++N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALQN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L + G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L + + + +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQV----Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRP-IETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG +E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAERT 356
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKRA 362
>sp|Q6SP92|BRE_MESAU BRCA1-A complex subunit BRE OS=Mesocricetus auratus GN=Bre PE=2
SV=1
Length = 383
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 162/327 (49%), Gaps = 29/327 (8%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +++KWD+I+NA++P PPD IFG ED +F P D ++ N L
Sbjct: 54 DRFKLHIPYAGESLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALHN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHMSSG 158
A+WN DP LL ++ EL QY +Q R+ E RL FE T+L + G M + +G
Sbjct: 103 ASWNPSDPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L + + + +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQV----Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRP-IETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG +E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAERT 356
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKRA 362
>sp|Q6P7Q1|BRE_RAT BRCA1-A complex subunit BRE OS=Rattus norvegicus GN=Bre PE=2 SV=1
Length = 383
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 162/327 (49%), Gaps = 29/327 (8%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D ++ N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALHN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L + G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCGRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L + + + +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQV----Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRP-IETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG +E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKEFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAERT 356
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKRA 362
>sp|Q8WN69|BRE_CHLAE BRCA1-A complex subunit BRE OS=Chlorocebus aethiops GN=BRE PE=2
SV=1
Length = 383
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 163/327 (49%), Gaps = 29/327 (8%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D +++N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDVEFLP---------DPSALQN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L + G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L + + + +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQV----Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRP-IETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG +E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAERT 356
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKRA 362
>sp|A6QQW8|BRE_BOVIN BRCA1-A complex subunit BRE OS=Bos taurus GN=BRE PE=2 SV=1
Length = 383
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 162/327 (49%), Gaps = 29/327 (8%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D ++ N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALHN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L + G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L + + + +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQV----Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRP-IETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG +E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAERT 356
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKRA 362
>sp|Q5ZML0|BRE_CHICK BRCA1-A complex subunit BRE OS=Gallus gallus GN=BRE PE=2 SV=1
Length = 383
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/330 (30%), Positives = 164/330 (49%), Gaps = 31/330 (9%)
Query: 39 TLDRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKN 98
+ DRF L IPY +T+KWD+I+NA +P PPD IFG ED +F P D ++ N
Sbjct: 52 SCDRFKLHIPYAGETLKWDIIFNAHYPDLPPDFIFG-EDAEFLP---------DPSALHN 101
Query: 99 SLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHMS 156
LA+WN +P LL ++ EL QY +Q R+ E RL FE T+L + G M +
Sbjct: 102 -LASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIY 158
Query: 157 SGVEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSA 209
+G + +F+ +P+ NI ++ P + ++L ++ + A +
Sbjct: 159 AGKKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVAL-----LSVSFEDAEAT 213
Query: 210 PHL-KLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRR 267
KL +P ++ +L + +P + G C+ +Y+P + + L +V + RR
Sbjct: 214 QVFPKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCQLLTNKVQYVIQGYHKRRE 273
Query: 268 FIEALAPLFGRP-IETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYF 326
+I A FG +E D+ + K + F FLV L FP+ QP+L QS +F
Sbjct: 274 YIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLYFPRDQPTLTFQSVYHF 333
Query: 327 NSQGMPIKSPLLTDYPWSPRWEHSQMAERT 356
+ G + S +YP+SPRW+ ++MA+R
Sbjct: 334 TNSGQ-LYSQAQKNYPYSPRWDGNEMAKRA 362
>sp|Q8K3W0|BRE_MOUSE BRCA1-A complex subunit BRE OS=Mus musculus GN=Bre PE=1 SV=2
Length = 383
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 162/327 (49%), Gaps = 29/327 (8%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA++P PPD IFG ED +F P D ++ N L
Sbjct: 54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALHN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L + G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCGRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L + + + +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQV----Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRP-IETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG +E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAERT 356
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKRA 362
>sp|Q5REX9|BRE_PONAB BRCA1-A complex subunit BRE OS=Pongo abelii GN=BRE PE=2 SV=1
Length = 383
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 163/327 (49%), Gaps = 29/327 (8%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L +PY +T+KWD+I+NA++P PPD IFG ED +F P D +++N L
Sbjct: 54 DRFKLHMPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALQN-L 102
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHMSSG 158
A+WN +P LL ++ EL QY +Q R+ E RL FE T+L + G M + +G
Sbjct: 103 ASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLLEEPQYGENMEIYAG 160
Query: 159 VEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSAPH 211
+ +F+ +P+ NI ++ P + ++L + + + +
Sbjct: 161 KKNNWTGEFSARFLLKLPVDFSNIPTYLLKDVNEDPGEDVALLSVSFEDTEATQV----Y 216
Query: 212 LKLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIE 270
KL +P ++ +L + +P + G C+ +Y+P + L +V + RR +I
Sbjct: 217 PKLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVPQVCHLLTNKVQYVIQGYHKRREYIA 276
Query: 271 ALAPLFGRP-IETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQ 329
A FG +E D+ + K + F FLV L FP+ QP+L QS +F +
Sbjct: 277 AFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSVYHFTNS 336
Query: 330 GMPIKSPLLTDYPWSPRWEHSQMAERT 356
G + S +YP+SPRW+ ++MA+R
Sbjct: 337 GQ-LYSQAQKNYPYSPRWDGNEMAKRA 362
>sp|Q568D5|BRE_DANRE BRCA1-A complex subunit BRE OS=Danio rerio GN=bre PE=2 SV=1
Length = 386
Score = 128 bits (322), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 156/324 (48%), Gaps = 23/324 (7%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF L IPY +T+KWD+I+NA P PPD IFG ED DF P + + N L
Sbjct: 57 DRFKLHIPYAGETLKWDIIFNARDPELPPDFIFG-EDADFLP---------EPSELPN-L 105
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHMSSG 158
+W++ P LL L+ E+ QY YQ +R+ D RL FE ++L G M + +G
Sbjct: 106 VSWDSGKPECLLLLVKEMLQQYHQYQCQRL--RDSSRLLFEYDSLLEDPNYGRNMEIYAG 163
Query: 159 VEKPEEVKFAVPLMDMNINKMVVGCPWRHPQKISLQVIYPVNRKYVSAPSAPHL----KL 214
+ +F+ + + + P + +L V VS A KL
Sbjct: 164 RKNSWTGEFSARFL-LKLPVDFSNIPIYLLKDTALDPGEDVALLSVSFEDAEATQVFPKL 222
Query: 215 MSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIEALA 273
+P+++ +L + +P + G C+ +Y+P + + L +V + RR +I A
Sbjct: 223 YLSPSIEHALGGSSALHIPAFPSGGCLIDYVPQVCQLLTNKVQYVIQGYHKRREYIAAFL 282
Query: 274 PLFGRP-IETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFNSQGMP 332
FG +E D+V + K + F FLV L FP+ QP+L QS +F S G
Sbjct: 283 SHFGMGVVEYDAVGFTKLTLLLMWKDFCFLVHVDLPLYFPRDQPTLTFQSIYHFTSSGQ- 341
Query: 333 IKSPLLTDYPWSPRWEHSQMAERT 356
+ S + YP+SPRW+ ++MA+R
Sbjct: 342 LYSQVQKSYPYSPRWDGNEMAKRA 365
>sp|Q6GPL9|BRE_XENLA BRCA1-A complex subunit BRE OS=Xenopus laevis GN=bre PE=2 SV=1
Length = 384
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 101/331 (30%), Positives = 164/331 (49%), Gaps = 32/331 (9%)
Query: 39 TLDRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKN 98
+ DRF L IPY +T+KWD+I+NA +P PPD IFG ED +F P D ++ N
Sbjct: 52 SCDRFKLHIPYAGETLKWDIIFNASYPELPPDFIFG-EDAEFLP---------DPSALHN 101
Query: 99 SLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHMS 156
L+ WN DP LL ++ EL QY YQ R+ E RL FE T+ + G+ M +
Sbjct: 102 -LSEWNPSDPECLLLVVKELVQQYHQYQCSRLSE--SSRLMFEYQTLQEEPQYGLNMEIY 158
Query: 157 SGVEKPEEVKFA------VPLMDMNINKMVVGCPWRHP-QKISLQVIYPVNRKYVSAPSA 209
+G + +F+ +P+ NI ++ P + ++L ++ + A +
Sbjct: 159 AGKKNNWTGEFSARFLLKMPVDFSNIPIYLLKDSNEDPGEDVAL-----LSVSFEDAEAT 213
Query: 210 PHL-KLMSTPALK-SLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRR 267
KL +P ++ +L + +P + G C+ +Y+P + + L +V + RR
Sbjct: 214 QVFPKLFLSPRIEHALGGSSALHIPVFPSGSCLIDYVPQVCQLLTNKVQYVIQGYHKRRE 273
Query: 268 FIEALAPLFGRP-IETDSVFYRKSMFFVASGAFSFLV-LFFLSTQFPKQQPSLMLQSSMY 325
+I A FG +E D+ + K ++ F FLV L FP+ QP+L QS +
Sbjct: 274 YIAAFLSHFGTGVVEYDAEGFTKLTLLLSWKDFCFLVHTVDLPLYFPRDQPTLTFQSVYH 333
Query: 326 FNSQGMPIKSPLLTDYPWSPRWEHSQMAERT 356
F + G + S +YP+SPRW+ ++MA+R
Sbjct: 334 FTNSGQ-LYSQAQKNYPYSPRWDGNEMAKRA 363
>sp|B6NXD5|BRE_BRAFL BRCA1-A complex subunit BRE OS=Branchiostoma floridae GN=BRE PE=3
SV=1
Length = 383
Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 90/338 (26%), Positives = 160/338 (47%), Gaps = 27/338 (7%)
Query: 41 DRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSL 100
DRF + IP+ D++KW+VI+++ P PPD IF E+ +F P D ++N L
Sbjct: 56 DRFKIYIPFAGDSLKWEVIFDSCQPSNPPDFIFLGENGNFDP---------DIEKLEN-L 105
Query: 101 ATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSREG---IEMHMSS 157
W+ K+P L+ I +L +Y YQ++ + RL+FE ++ E +E+HM +
Sbjct: 106 THWDPKNPESLVLAIEDLMREYRCYQKQLIEGYS--RLQFEYSSLQGMEACDDVEVHMGN 163
Query: 158 ----GVEKPEEVKFAVPLMDMNINKMVVGCPWRHPQKISLQVIYPVNRKYVSAPSAPHLK 213
++ P +P+ I + +V + L V+ + P L
Sbjct: 164 RLPGTLDSPVNFLIRLPIDLSPIPQYLV----KDDPGEDLAVLLAKFHNSEGSRVTPQL- 218
Query: 214 LMSTPALKSLFSVDDVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIEALA 273
+S +L +++P + G C+ +Y+P +++ L++Q+ V + RR ++ A
Sbjct: 219 FLSPKVEHALGDNTALRIPRFPTGGCLMDYVPQVQDFLQKQIDHIVEGYQRRREYVAAFI 278
Query: 274 PLFGRPI-ETDSVFYRKSMFFVASGAFSFLVLFFLSTQFPKQQPSLMLQSSMYFN-SQGM 331
FG + E D+ + K + F F++ L ++FP+ P QS + + + G
Sbjct: 279 SRFGGSVLEYDAESFTKLSLVLEWNEFFFVLHIELPSRFPQDMPVFTFQSCYHLSKTNGE 338
Query: 332 PIKSPLLTDYPWSPRWEHSQMAERTFEFLVDESVNFKK 369
P S + YP+SPRW +MA R F++D FKK
Sbjct: 339 PYVS-VQKSYPYSPRWTGEEMAHRAKLFILDFIPQFKK 375
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,571,391
Number of Sequences: 539616
Number of extensions: 6110386
Number of successful extensions: 12815
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12751
Number of HSP's gapped (non-prelim): 35
length of query: 381
length of database: 191,569,459
effective HSP length: 119
effective length of query: 262
effective length of database: 127,355,155
effective search space: 33367050610
effective search space used: 33367050610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)