Query 016870
Match_columns 381
No_of_seqs 53 out of 55
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06113 BRE: Brain and reprod 100.0 1E-97 2E-102 729.8 28.5 303 5-326 13-333 (333)
2 PLN00172 ubiquitin conjugating 96.5 0.027 5.9E-07 50.3 10.4 98 263-362 5-112 (147)
3 PTZ00390 ubiquitin-conjugating 96.5 0.03 6.4E-07 50.5 10.3 84 277-362 21-113 (152)
4 PF00179 UQ_con: Ubiquitin-con 96.4 0.025 5.4E-07 49.2 9.2 63 298-361 44-109 (140)
5 smart00212 UBCc Ubiquitin-conj 95.3 0.22 4.8E-06 43.6 10.5 64 298-362 45-111 (145)
6 cd00195 UBCc Ubiquitin-conjuga 95.2 0.2 4.3E-06 43.7 10.0 82 280-362 21-111 (141)
7 PF05773 RWD: RWD domain; Int 94.8 0.19 4.1E-06 40.9 8.2 63 262-324 3-74 (113)
8 KOG0417 Ubiquitin-protein liga 93.8 0.099 2.1E-06 47.6 4.9 57 301-359 50-109 (148)
9 smart00591 RWD domain in RING 91.7 0.52 1.1E-05 38.1 5.9 58 269-326 2-68 (107)
10 COG5078 Ubiquitin-protein liga 91.3 0.39 8.5E-06 43.9 5.3 61 300-362 54-117 (153)
11 PF00179 UQ_con: Ubiquitin-con 88.7 6.5 0.00014 34.1 10.6 96 13-122 5-108 (140)
12 smart00212 UBCc Ubiquitin-conj 83.8 11 0.00023 33.0 9.5 67 47-122 41-109 (145)
13 PTZ00390 ubiquitin-conjugating 80.6 3.8 8.2E-05 37.0 5.5 68 10-85 7-80 (152)
14 cd00195 UBCc Ubiquitin-conjuga 78.1 13 0.00028 32.4 7.9 101 10-123 4-110 (141)
15 PF14461 Prok-E2_B: Prokaryoti 77.9 11 0.00024 32.9 7.5 58 297-357 34-97 (133)
16 COG5078 Ubiquitin-protein liga 77.2 6.8 0.00015 35.9 6.1 58 48-111 49-107 (153)
17 KOG0419 Ubiquitin-protein liga 76.8 5.7 0.00012 36.0 5.4 66 48-119 47-113 (152)
18 PLN00172 ubiquitin conjugating 74.4 6.7 0.00015 35.1 5.3 59 40-106 30-96 (147)
19 PF05743 UEV: UEV domain; Int 66.8 22 0.00049 30.9 6.7 105 12-122 3-115 (121)
20 KOG0894 Ubiquitin-protein liga 62.3 11 0.00025 36.6 4.4 60 304-365 57-120 (244)
21 KOG0419 Ubiquitin-protein liga 60.1 22 0.00047 32.4 5.4 93 264-360 5-113 (152)
22 PF14461 Prok-E2_B: Prokaryoti 50.4 69 0.0015 28.0 7.0 54 50-111 34-92 (133)
23 KOG0425 Ubiquitin-protein liga 47.0 95 0.0021 29.1 7.5 87 275-361 24-125 (171)
24 KOG0426 Ubiquitin-protein liga 37.7 66 0.0014 29.4 4.9 76 286-361 34-124 (165)
25 KOG0427 Ubiquitin conjugating 31.0 1.2E+02 0.0026 27.8 5.4 54 300-359 62-119 (161)
26 KOG0423 Ubiquitin-protein liga 28.9 1.9E+02 0.0041 27.6 6.5 113 2-127 3-145 (223)
27 PF12554 MOZART1: Mitotic-spin 22.5 40 0.00087 25.4 0.8 14 106-119 35-48 (48)
28 PF15178 TOM_sub5: Mitochondri 22.2 1.3E+02 0.0029 22.9 3.4 26 344-369 8-33 (51)
No 1
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=100.00 E-value=1e-97 Score=729.80 Aligned_cols=303 Identities=45% Similarity=0.769 Sum_probs=270.6
Q ss_pred CCchHHHHHHHH--HHhcCCccEEEeeeecCCC---CCCCCceEEEEccccCCceeEEEEEcCCCCCCCCceEeCCCCCC
Q 016870 5 GFPPFISAQLHY--LINHFAHPVRVEQAWSGSK---YSNTLDRFTLLIPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDED 79 (381)
Q Consensus 5 ~~~p~i~~ql~~--l~~~~~~~ikv~~~~sg~~---~~~~~DRF~L~IPyc~~~l~WdVIfd~~~P~~pPDfIF~~dD~~ 79 (381)
+++|+|+++|++ |+..+++|+||+++||||+ +++++|||||+||||+++|+|||||||++|++||||||| ||++
T Consensus 13 ~~~p~l~~vl~~~~lgl~~~~~~~v~~~~sg~~~~~~~~~~DRF~l~IPy~~~~l~W~viFd~~~p~~pPDfiF~-eD~~ 91 (333)
T PF06113_consen 13 YIRPLLQSVLQNGRLGLCSTGCIRVVDLWSGCRSLTPGPNCDRFKLLIPYCGEYLKWDVIFDAQYPEFPPDFIFG-EDDN 91 (333)
T ss_pred hhHHHHHHHHHhccccccccCceeeeecccccCcCCCCCccceEEEEeeccCCEEEEEEEEcCCCCCCCCCEEeC-CCcC
Confidence 789999999999 8888999999999999996 456899999999999999999999999999999999998 8899
Q ss_pred CcCCCCCCCCCCCchhhhhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHhcccCCCcceeEeeeecccC----CeeEEE
Q 016870 80 FHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLSRE----GIEMHM 155 (381)
Q Consensus 80 F~p~~~~~~~~~~~~~~~~sL~~Wd~~dp~~Ll~li~EL~~~Y~~yQ~~~l~e~~~~RL~FEystL~~~e----~iE~~~ 155 (381)
|+| |.+++ ++|++||++||+||+++|+||+++|++||++++++. +||+||||||++++ +|||++
T Consensus 92 F~p---------d~s~l-~~L~~Wd~~dp~~Ll~li~EL~~~Y~~yQ~~~~~~~--~RL~FE~stl~~~~~~~~~iev~~ 159 (333)
T PF06113_consen 92 FLP---------DPSKL-PSLVNWDPSDPNCLLNLISELRQLYKEYQIKRVKED--DRLQFEYSTLVSQEEIGENIEVYL 159 (333)
T ss_pred cCC---------Chhhc-chhhcCCCCCchHHHHHHHHHHHHHHHHHHHHhccC--CceEEEehhhhcccccceeEEEEE
Confidence 999 55565 999999999999999999999999999999999984 89999999999763 345544
Q ss_pred eccCCC--CceeEEEEeecccccccc---ccCCCCCCCC--ceEEEEEeecccCCCCCCCCCccccccChhhh-cccCCC
Q 016870 156 SSGVEK--PEEVKFAVPLMDMNINKM---VVGCPWRHPQ--KISLQVIYPVNRKYVSAPSAPHLKLMSTPALK-SLFSVD 227 (381)
Q Consensus 156 ~~~~~~--~~ev~F~vpL~d~dl~~~---~~~~~~~~~~--~~~L~V~F~~g~~~~~~~~~P~lkL~lSp~le-~L~~~~ 227 (381)
...+.+ +.+|+|+|.| ++|++++ ..+..+++|+ .++|+|+|. +.+ .++++|+ |++||++| +|||++
T Consensus 160 ~~~~~~~~~~~v~fLi~l-pvD~s~lp~~~~k~~~~~~~~~~~ll~vsf~-~~~--~~~v~p~--L~LSp~lek~Lg~~~ 233 (333)
T PF06113_consen 160 GRKNPGTGEFAVRFLIKL-PVDFSKLPEYLLKGINENPGEDVALLSVSFQ-GPE--SSRVNPQ--LFLSPRLEKALGSVD 233 (333)
T ss_pred cCCCCCcccccceeEEEc-ccchhhCCcccccccccccccceEEEEEEec-CCC--cCcccce--EeecCcHHHhhCCcc
Confidence 444333 4678999888 5554444 4444445666 678999995 333 3358896 88899998 899999
Q ss_pred CcccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-ccccccccceEeeeeeeCcceEEEEEe
Q 016870 228 DVKLPPWLDGMCMAEYLPHLEEALERQVSEAVSLIEVRRRFIEALAPLFGRP-IETDSVFYRKSMFFVASGAFSFLVLFF 306 (381)
Q Consensus 228 ~l~lP~w~~g~cL~dYvP~v~e~L~~qV~~~v~~~~~RrefIaaL~~~fG~~-LEyDa~~f~k~slL~~~~~F~flvHi~ 306 (381)
++|||+|++|||||||||+|+++|++||++|++++++||+|||||+++||++ ||||+++||||++|+++++|||||||+
T Consensus 234 ~~~lP~~~~~~cL~eYvp~v~e~L~~~V~~~v~~~~~RrefI~al~~~fg~~vLE~D~~~~~k~s~L~~~~~F~flvHi~ 313 (333)
T PF06113_consen 234 DLKLPPWPDGMCLMEYVPNVEELLQEQVEEVVQSIKKRREFIEALLSHFGRPVLEYDAEFFRKISFLLESGDFTFLVHIS 313 (333)
T ss_pred cccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecccccchhhHHhhcCCeEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ecCCCCCCCCeEEEEeeeec
Q 016870 307 LSTQFPKQQPSLMLQSSMYF 326 (381)
Q Consensus 307 Lp~~FP~~qP~ltlQS~yH~ 326 (381)
||++||++||+|||||+|||
T Consensus 314 Lp~~FP~~qP~ltlqS~yHf 333 (333)
T PF06113_consen 314 LPIQFPKDQPSLTLQSVYHF 333 (333)
T ss_pred ccCCCCCcCCeEEEEeeccC
Confidence 99999999999999999997
No 2
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=96.51 E-value=0.027 Score=50.32 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhh-hcCCCccccccccceEeeeee------eCcceEEEEEeecCCCCCCCCeEEEEe-eee--ccCCCCc
Q 016870 263 EVRRRFIEALAP-LFGRPIETDSVFYRKSMFFVA------SGAFSFLVLFFLSTQFPKQQPSLMLQS-SMY--FNSQGMP 332 (381)
Q Consensus 263 ~~RrefIaaL~~-~fG~~LEyDa~~f~k~slL~~------~~~F~flvHi~Lp~~FP~~qP~ltlQS-~yH--~~s~g~p 332 (381)
+.+||+-+.... .-|-.++-+.++.....+.+. +.+=.|-+.|.+|..||.++|.++|.+ +|| .++.|..
T Consensus 5 Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~i 84 (147)
T PLN00172 5 RIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSI 84 (147)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEE
Confidence 345555554432 233334555555555544432 222357888899999999999999977 677 5689998
Q ss_pred cccCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 016870 333 IKSPLLTDYPWSPRWEHSQMAERTFEFLVD 362 (381)
Q Consensus 333 ~~s~~~~~YPySPRW~~~eMa~R~~~fl~~ 362 (381)
|-+ .++ --|+|.|+...+..-|...+.+
T Consensus 85 Cl~-il~-~~W~p~~ti~~il~~i~~ll~~ 112 (147)
T PLN00172 85 CLD-ILR-DQWSPALTVSKVLLSISSLLTD 112 (147)
T ss_pred Ecc-cCc-CCCCCcCcHHHHHHHHHHHHhC
Confidence 886 443 3699999998888888777653
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=96.46 E-value=0.03 Score=50.47 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=61.0
Q ss_pred CCCccccccccceEeeeee------eCcceEEEEEeecCCCCCCCCeEEEEe-eeecc--CCCCccccCCCCCCCCCCCC
Q 016870 277 GRPIETDSVFYRKSMFFVA------SGAFSFLVLFFLSTQFPKQQPSLMLQS-SMYFN--SQGMPIKSPLLTDYPWSPRW 347 (381)
Q Consensus 277 G~~LEyDa~~f~k~slL~~------~~~F~flvHi~Lp~~FP~~qP~ltlQS-~yH~~--s~g~p~~s~~~~~YPySPRW 347 (381)
|..++.+..+.....+.+. +..=.|-+.|.+|..||..+|.++|.+ +||-| +.|..|-+ .+++ -|||.|
T Consensus 21 ~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~-iL~~-~W~p~~ 98 (152)
T PTZ00390 21 GIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLD-ILKD-KWSPAL 98 (152)
T ss_pred CeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECc-cCcc-cCCCCC
Confidence 4445555556665555543 122358889999999999999999965 78844 77998886 4433 599999
Q ss_pred ChHHHHHHHHHHHHH
Q 016870 348 EHSQMAERTFEFLVD 362 (381)
Q Consensus 348 ~~~eMa~R~~~fl~~ 362 (381)
+...+...+...+.+
T Consensus 99 ti~~iL~~i~~ll~~ 113 (152)
T PTZ00390 99 QIRTVLLSIQALLSA 113 (152)
T ss_pred cHHHHHHHHHHHHhC
Confidence 999988888777753
No 4
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=96.39 E-value=0.025 Score=49.20 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=47.7
Q ss_pred cceEEEEEeecCCCCCCCCeEEEEe-eee--ccCCCCccccCCCCCCCCCCCCChHHHHHHHHHHHH
Q 016870 298 AFSFLVLFFLSTQFPKQQPSLMLQS-SMY--FNSQGMPIKSPLLTDYPWSPRWEHSQMAERTFEFLV 361 (381)
Q Consensus 298 ~F~flvHi~Lp~~FP~~qP~ltlQS-~yH--~~s~g~p~~s~~~~~YPySPRW~~~eMa~R~~~fl~ 361 (381)
.=.|-++|.+|..||..+|.++|.+ +|| .+.+|..|-+ .+++--|||.|+...+...++.++.
T Consensus 44 gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~-~l~~~~W~p~~~i~~il~~i~~ll~ 109 (140)
T PF00179_consen 44 GGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLD-ILNPESWSPSYTIESILLSIQSLLS 109 (140)
T ss_dssp TSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHG-GGTTTTC-TTSHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhh-hhhcccCCcccccccHHHHHHHHHh
Confidence 3458899999999999999999998 688 4478998885 5654449999999998888887774
No 5
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=95.28 E-value=0.22 Score=43.59 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=51.6
Q ss_pred cceEEEEEeecCCCCCCCCeEEEEee-ee--ccCCCCccccCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 016870 298 AFSFLVLFFLSTQFPKQQPSLMLQSS-MY--FNSQGMPIKSPLLTDYPWSPRWEHSQMAERTFEFLVD 362 (381)
Q Consensus 298 ~F~flvHi~Lp~~FP~~qP~ltlQS~-yH--~~s~g~p~~s~~~~~YPySPRW~~~eMa~R~~~fl~~ 362 (381)
+=.|-++|.+|..||..+|.++|.+. +| .+++|..|.+ .+.+--|+|.++..++...+...+.+
T Consensus 45 g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~-~l~~~~W~p~~~l~~il~~i~~~l~~ 111 (145)
T smart00212 45 GGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLD-ILKQEKWSPATTLETVLLSIQSLLSE 111 (145)
T ss_pred CcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehh-hcCCCCCCCCCcHHHHHHHHHHHHhC
Confidence 34578999999999999999999774 56 4589998886 55534699999999998888877754
No 6
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=95.24 E-value=0.2 Score=43.68 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=58.5
Q ss_pred ccccccccceEeeeeee---C---cceEEEEEeecCCCCCCCCeEEEEe-eee--ccCCCCccccCCCCCCCCCCCCChH
Q 016870 280 IETDSVFYRKSMFFVAS---G---AFSFLVLFFLSTQFPKQQPSLMLQS-SMY--FNSQGMPIKSPLLTDYPWSPRWEHS 350 (381)
Q Consensus 280 LEyDa~~f~k~slL~~~---~---~F~flvHi~Lp~~FP~~qP~ltlQS-~yH--~~s~g~p~~s~~~~~YPySPRW~~~ 350 (381)
++-+.++..+..+.+.- + +=.|-+.|.+|..||..+|.++|.+ +|| .+++|..|.+ .+..--|+|.++-.
T Consensus 21 v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~-~l~~~~W~p~~~l~ 99 (141)
T cd00195 21 AEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLS-ILKTHGWSPAYTLR 99 (141)
T ss_pred EEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchh-hcCCCCcCCcCcHH
Confidence 55555555665554421 1 2247778899999999999999954 566 4488998886 44332499999988
Q ss_pred HHHHHHHHHHHH
Q 016870 351 QMAERTFEFLVD 362 (381)
Q Consensus 351 eMa~R~~~fl~~ 362 (381)
.+...+...+.+
T Consensus 100 ~il~~i~~~l~~ 111 (141)
T cd00195 100 TVLLSLQSLLNE 111 (141)
T ss_pred HHHHHHHHHHhC
Confidence 888888887763
No 7
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.79 E-value=0.19 Score=40.92 Aligned_cols=63 Identities=24% Similarity=0.261 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhhcCCCc-cccccccceEeeee--------eeCcceEEEEEeecCCCCCCCCeEEEEeee
Q 016870 262 IEVRRRFIEALAPLFGRPI-ETDSVFYRKSMFFV--------ASGAFSFLVLFFLSTQFPKQQPSLMLQSSM 324 (381)
Q Consensus 262 ~~~RrefIaaL~~~fG~~L-EyDa~~f~k~slL~--------~~~~F~flvHi~Lp~~FP~~qP~ltlQS~y 324 (381)
-+.+.+=|+||.+.||... +.+...-....+.+ ..+...+.|+|.+|.+||...|.+.+++..
T Consensus 3 ~e~~~~EieaL~sIy~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDFIEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSESSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHHcCCCccccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 3556677899999999984 66666666666666 355677899999999999999999999983
No 8
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.099 Score=47.59 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=43.9
Q ss_pred EEEEEeecCCCCCCCCeEEEEe-eeecc--CCCCccccCCCCCCCCCCCCChHHHHHHHHHH
Q 016870 301 FLVLFFLSTQFPKQQPSLMLQS-SMYFN--SQGMPIKSPLLTDYPWSPRWEHSQMAERTFEF 359 (381)
Q Consensus 301 flvHi~Lp~~FP~~qP~ltlQS-~yH~~--s~g~p~~s~~~~~YPySPRW~~~eMa~R~~~f 359 (381)
|.+-|++|..||-.+|.++|+. +||.| +.|.-|-. .+++= |||+|+-+-..--|+.-
T Consensus 50 F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclD-ILk~~-WsPAl~i~~VllsI~sL 109 (148)
T KOG0417|consen 50 FFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLD-ILKDQ-WSPALTISKVLLSICSL 109 (148)
T ss_pred EEEEEECCCCCCCCCCceEeecccccCCcCccccchHH-hhhcc-CChhhHHHHHHHHHHHH
Confidence 5667778999999999999986 89965 77998885 56655 99999876555444433
No 9
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=91.67 E-value=0.52 Score=38.12 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=39.6
Q ss_pred HHHHhhhcCCCccccccccc--eEeeeeeeC-------cceEEEEEeecCCCCCCCCeEEEEeeeec
Q 016870 269 IEALAPLFGRPIETDSVFYR--KSMFFVASG-------AFSFLVLFFLSTQFPKQQPSLMLQSSMYF 326 (381)
Q Consensus 269 IaaL~~~fG~~LEyDa~~f~--k~slL~~~~-------~F~flvHi~Lp~~FP~~qP~ltlQS~yH~ 326 (381)
++||.+.||..++.-...=+ .+++-+... .-.+.++|.+|..||...|.+.+.|..++
T Consensus 2 ieaL~sIy~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~~~l 68 (107)
T smart00591 2 LEALESIYPEDFEVIDEDARIPEITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLNSEGL 68 (107)
T ss_pred hHHHHhhccceeEEecCCCCccEEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEECCCCC
Confidence 57888899886332222112 344444322 34588999999999999999999987554
No 10
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.39 Score=43.88 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=46.5
Q ss_pred eEEEEEeecCCCCCCCCeEEEEe-eeecc--CCCCccccCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 016870 300 SFLVLFFLSTQFPKQQPSLMLQS-SMYFN--SQGMPIKSPLLTDYPWSPRWEHSQMAERTFEFLVD 362 (381)
Q Consensus 300 ~flvHi~Lp~~FP~~qP~ltlQS-~yH~~--s~g~p~~s~~~~~YPySPRW~~~eMa~R~~~fl~~ 362 (381)
.|-+++++|..||-.+|.++|.+ +||.| .+|+.|-+ .++ =-|||-|+..-...-+...|.+
T Consensus 54 ~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLd-IL~-~~WsP~~~l~sILlsl~slL~~ 117 (153)
T COG5078 54 IFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLD-ILK-DRWSPVYTLETILLSLQSLLLS 117 (153)
T ss_pred EEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhH-HHh-CCCCccccHHHHHHHHHHHHcC
Confidence 37788899999999999999987 79977 55999987 454 4677777776666555555543
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=88.67 E-value=6.5 Score=34.07 Aligned_cols=96 Identities=19% Similarity=0.430 Sum_probs=58.3
Q ss_pred HHHHHHhcCCccEEEeeeecCCCCCCCCceEEEEc------cccCCceeEEEEEcCCCCCCCCceEeCCCCCCCcCCCCC
Q 016870 13 QLHYLINHFAHPVRVEQAWSGSKYSNTLDRFTLLI------PYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNE 86 (381)
Q Consensus 13 ql~~l~~~~~~~ikv~~~~sg~~~~~~~DRF~L~I------Pyc~~~l~WdVIfd~~~P~~pPDfIF~~dD~~F~p~~~~ 86 (381)
-++-+....+..+.+.-... .....+.+.| ||.|...+-+|.|...||..||.+.|. ..=|+|++.
T Consensus 5 E~~~l~~~~~~~~~~~~~~~-----~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~--t~i~HPni~- 76 (140)
T PF00179_consen 5 ELKELQKNPPPGISVQPSED-----DNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFL--TPIFHPNID- 76 (140)
T ss_dssp HHHHHHHSHTTTEEEEEEST-----TETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEES--SS-SBTTB--
T ss_pred HHHHHhhCCCCCEEEEECCC-----CChheEEEEEeccCccceecccccccccccccccccccccccc--ccccccccc-
Confidence 34445555555565544332 1245555555 488889999999999999999999997 566999665
Q ss_pred CCCCCCchhhhhhcc--cCCCCCcchHHHHHHHHHHHH
Q 016870 87 SGGEGDSRSIKNSLA--TWNNKDPTRLLALIWELRDQY 122 (381)
Q Consensus 87 ~~~~~~~~~~~~sL~--~Wd~~dp~~Ll~li~EL~~~Y 122 (381)
.++ .. -+ +.|. .|++ ...+..++..|+.+.
T Consensus 77 ~~G--~i-cl-~~l~~~~W~p--~~~i~~il~~i~~ll 108 (140)
T PF00179_consen 77 ENG--RI-CL-DILNPESWSP--SYTIESILLSIQSLL 108 (140)
T ss_dssp TTS--BB-GH-GGGTTTTC-T--TSHHHHHHHHHHHHH
T ss_pred ccc--cc-hh-hhhhcccCCc--ccccccHHHHHHHHH
Confidence 222 11 11 4455 3888 566666666666655
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=83.83 E-value=11 Score=32.98 Aligned_cols=67 Identities=22% Similarity=0.468 Sum_probs=48.0
Q ss_pred ccccCCceeEEEEEcCCCCCCCCceEeCCCCCCCcCCCCCCCCCCCchhhhhhcc--cCCCCCcchHHHHHHHHHHHH
Q 016870 47 IPYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSLA--TWNNKDPTRLLALIWELRDQY 122 (381)
Q Consensus 47 IPyc~~~l~WdVIfd~~~P~~pPDfIF~~dD~~F~p~~~~~~~~~~~~~~~~sL~--~Wd~~dp~~Ll~li~EL~~~Y 122 (381)
-||.+-.++-+|.|...+|..||.+.|. ..=|+|++.. ++.... +.|. +|++. ..|..++..|....
T Consensus 41 ~~y~g~~f~~~l~~p~~yP~~pP~v~f~--~~i~Hp~i~~-~G~icl----~~l~~~~W~p~--~~l~~il~~i~~~l 109 (145)
T smart00212 41 TPYEGGIFKLTIEFPPDYPFKPPKVKFI--TKIYHPNVDS-SGEICL----DILKQEKWSPA--TTLETVLLSIQSLL 109 (145)
T ss_pred CCcCCcEEEEEEECCcccCCCCCEEEEe--CCceEeeECC-CCCEeh----hhcCCCCCCCC--CcHHHHHHHHHHHH
Confidence 3588888899999999999999999996 5678997652 221111 4454 79976 55666666665554
No 13
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=80.56 E-value=3.8 Score=36.96 Aligned_cols=68 Identities=22% Similarity=0.439 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCccEEEeeeecCCCCCCCCceEEEEc------cccCCceeEEEEEcCCCCCCCCceEeCCCCCCCcCC
Q 016870 10 ISAQLHYLINHFAHPVRVEQAWSGSKYSNTLDRFTLLI------PYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPF 83 (381)
Q Consensus 10 i~~ql~~l~~~~~~~ikv~~~~sg~~~~~~~DRF~L~I------Pyc~~~l~WdVIfd~~~P~~pPDfIF~~dD~~F~p~ 83 (381)
|..-++-|....+..+++.-. . .....+++.| ||.+-..+-+|.|..+||..||.+.|- -.-|||+
T Consensus 7 l~~E~~~l~~~~~~~i~~~~~--~----~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~--t~i~HPN 78 (152)
T PTZ00390 7 IEKETQNLANDPPPGIKAEPD--P----GNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFL--TKIYHPN 78 (152)
T ss_pred HHHHHHHHHhCCCCCeEEEEC--C----CCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEe--cCCeece
Confidence 334455555554555665421 1 1245666654 488888999999999999999999996 5679997
Q ss_pred CC
Q 016870 84 YN 85 (381)
Q Consensus 84 ~~ 85 (381)
+.
T Consensus 79 V~ 80 (152)
T PTZ00390 79 ID 80 (152)
T ss_pred EC
Confidence 64
No 14
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=78.10 E-value=13 Score=32.37 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCccEEEeeeecCCCCCCCCceEEEEcc----ccCCceeEEEEEcCCCCCCCCceEeCCCCCCCcCCCC
Q 016870 10 ISAQLHYLINHFAHPVRVEQAWSGSKYSNTLDRFTLLIP----YCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYN 85 (381)
Q Consensus 10 i~~ql~~l~~~~~~~ikv~~~~sg~~~~~~~DRF~L~IP----yc~~~l~WdVIfd~~~P~~pPDfIF~~dD~~F~p~~~ 85 (381)
|.+-+.-+....+..+++.- +. +....=++++..| |.+..++-+|.|...+|..||.+.|- -.=|+|.+.
T Consensus 4 l~~E~~~l~~~~~~~~~v~~--~~--~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~--~~i~HpnV~ 77 (141)
T cd00195 4 LQKELKDLKKDPPSGISAEP--VE--ENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFV--TKIYHPNVD 77 (141)
T ss_pred HHHHHHHHHhCCCCCeEEEE--CC--CChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEe--CCcccCCCC
Confidence 33444445544444455432 11 1111234445545 88888888999999999999999995 567899665
Q ss_pred CCCCCCCchhhhhhccc--CCCCCcchHHHHHHHHHHHHH
Q 016870 86 ESGGEGDSRSIKNSLAT--WNNKDPTRLLALIWELRDQYM 123 (381)
Q Consensus 86 ~~~~~~~~~~~~~sL~~--Wd~~dp~~Ll~li~EL~~~Y~ 123 (381)
.++.... ..|.. |++. .+|..++..|.....
T Consensus 78 -~~G~icl----~~l~~~~W~p~--~~l~~il~~i~~~l~ 110 (141)
T cd00195 78 -ENGKICL----SILKTHGWSPA--YTLRTVLLSLQSLLN 110 (141)
T ss_pred -CCCCCch----hhcCCCCcCCc--CcHHHHHHHHHHHHh
Confidence 2332222 34443 8774 346666666655544
No 15
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=77.94 E-value=11 Score=32.95 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=45.8
Q ss_pred CcceEEEEEeecCCCCCCCCeEEEEe------eeeccCCCCccccCCCCCCCCCCCCChHHHHHHHH
Q 016870 297 GAFSFLVLFFLSTQFPKQQPSLMLQS------SMYFNSQGMPIKSPLLTDYPWSPRWEHSQMAERTF 357 (381)
Q Consensus 297 ~~F~flvHi~Lp~~FP~~qP~ltlQS------~yH~~s~g~p~~s~~~~~YPySPRW~~~eMa~R~~ 357 (381)
+.=.+-|++.+|..||..+|.+-+.. .-|-.+.|..|.... .+.+. .|++..++.++.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~--~~~~D-~~~P~~~~~~~l 97 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDE--ELVLD-PWDPEGIIADCL 97 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecC--CcccC-ccCHHHHHHHHH
Confidence 67778999999999999999999984 348889999999532 56665 488887766653
No 16
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.19 E-value=6.8 Score=35.91 Aligned_cols=58 Identities=21% Similarity=0.464 Sum_probs=42.9
Q ss_pred cccCCceeEEEEEcCCCCCCCCceEeCCCCCCCcCCCCCCCCCCCchhhhhhcccCCC-CCcchH
Q 016870 48 PYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNN-KDPTRL 111 (381)
Q Consensus 48 Pyc~~~l~WdVIfd~~~P~~pPDfIF~~dD~~F~p~~~~~~~~~~~~~~~~sL~~Wd~-~dp~~L 111 (381)
||.|-..+=.+-|...||-.||-+.|- ..-|||++. .++..=..-+ + .+|.+ .+.+..
T Consensus 49 pYegg~f~~~l~fP~~YP~~PPkv~F~--t~i~HPNV~-~~G~vCLdIL-~--~~WsP~~~l~sI 107 (153)
T COG5078 49 PYEGGIFKLTLEFPEDYPFKPPKVRFT--TKIFHPNVD-PSGNVCLDIL-K--DRWSPVYTLETI 107 (153)
T ss_pred CcCCCEEEEEEECCCCCCCCCCeeeec--cCCcCCCcC-CCCCChhHHH-h--CCCCccccHHHH
Confidence 689989999999999999999999996 789999776 3332222222 2 78987 455433
No 17
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.80 E-value=5.7 Score=36.03 Aligned_cols=66 Identities=26% Similarity=0.454 Sum_probs=46.2
Q ss_pred cccCCceeEEEEEcCCCCCCCCceEeCCCCCCCcCCCCCCCCCCCchhhhhhcccCCC-CCcchHHHHHHHHH
Q 016870 48 PYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNN-KDPTRLLALIWELR 119 (381)
Q Consensus 48 Pyc~~~l~WdVIfd~~~P~~pPDfIF~~dD~~F~p~~~~~~~~~~~~~~~~sL~~Wd~-~dp~~Ll~li~EL~ 119 (381)
||-+-+.+-.+=|+.+||..||-+-|- -+-|+|++.+ +++.=+.-+ ++ .|++ .|..+.|.-|+-|+
T Consensus 47 p~e~gtFkLtl~FteeYpnkPP~VrFv--s~mFHPNvya-~G~iClDiL-qN--rWsp~Ydva~ILtsiQslL 113 (152)
T KOG0419|consen 47 PFEGGTFKLTLEFTEEYPNKPPTVRFV--SKMFHPNVYA-DGSICLDIL-QN--RWSPTYDVASILTSIQSLL 113 (152)
T ss_pred CcCCceEEEEEEcccccCCCCCeeEee--eeccCCCcCC-CCcchHHHH-hc--CCCCchhHHHHHHHHHHHh
Confidence 566666667778899999999999997 7889997643 332222222 33 8988 57777777776554
No 18
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=74.37 E-value=6.7 Score=35.05 Aligned_cols=59 Identities=31% Similarity=0.638 Sum_probs=42.2
Q ss_pred CceEEEEc------cccCCceeEEEEEcCCCCCCCCceEeCCCCCCCcCCCCCCCCCCCchhhh-hhc-ccCCCC
Q 016870 40 LDRFTLLI------PYCLDTIKWDVIYNAEFPHAPPDIIFGPEDEDFHPFYNESGGEGDSRSIK-NSL-ATWNNK 106 (381)
Q Consensus 40 ~DRF~L~I------Pyc~~~l~WdVIfd~~~P~~pPDfIF~~dD~~F~p~~~~~~~~~~~~~~~-~sL-~~Wd~~ 106 (381)
...+++.| ||.+...+-+|.|...||..||.+.|- -.-|||++.. ++ .+| ..| .+|++.
T Consensus 30 l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~--t~i~HPNv~~-~G-----~iCl~il~~~W~p~ 96 (147)
T PLN00172 30 LFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFT--TKIYHPNINS-NG-----SICLDILRDQWSPA 96 (147)
T ss_pred hheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEe--cCcccceECC-CC-----EEEcccCcCCCCCc
Confidence 45555543 488888899999999999999999996 5679997642 22 221 223 469885
No 19
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=66.84 E-value=22 Score=30.89 Aligned_cols=105 Identities=16% Similarity=0.243 Sum_probs=60.8
Q ss_pred HHHHHHHhcCC-ccEEEeeeecCCCCCCCCce--E--EEEccccCC--ceeEEEEEcCCCCCCCCceEeCCCCCCCcC-C
Q 016870 12 AQLHYLINHFA-HPVRVEQAWSGSKYSNTLDR--F--TLLIPYCLD--TIKWDVIYNAEFPHAPPDIIFGPEDEDFHP-F 83 (381)
Q Consensus 12 ~ql~~l~~~~~-~~ikv~~~~sg~~~~~~~DR--F--~L~IPyc~~--~l~WdVIfd~~~P~~pPDfIF~~dD~~F~p-~ 83 (381)
.++..++.+++ +..+.+.....+ +....- . ||-|.|.|. .+--.+-+=-+||..||=+...++...... .
T Consensus 3 ~d~~~~l~~y~~L~p~~~~ft~~~--G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~ 80 (121)
T PF05743_consen 3 NDVLSVLQNYPSLRPRTDTFTFND--GSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPS 80 (121)
T ss_dssp HHHHHHHHHSTTEEEEEEEEESTT--STEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGC
T ss_pred HHHHHHHHHCCCCcEeeeeeEcCC--CChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCC
Confidence 45566666664 455555454433 222122 2 344557665 556677788999999999888776553333 3
Q ss_pred CCCCCCCCCchhhhhhcccCCCCCcchHHHHHHHHHHHH
Q 016870 84 YNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQY 122 (381)
Q Consensus 84 ~~~~~~~~~~~~~~~sL~~Wd~~dp~~Ll~li~EL~~~Y 122 (381)
+ .-|.++.... +.|.+|+. .-+.|+.++++|.+.+
T Consensus 81 ~-~Vd~~G~v~~--pyL~~W~~-~~s~L~~lv~~l~~~F 115 (121)
T PF05743_consen 81 H-HVDSNGRVYL--PYLQNWNP-PSSNLVDLVQELQAVF 115 (121)
T ss_dssp C-CB-TTSBB-S--HHHHT--T-TTS-HHHHHHHHHHCC
T ss_pred C-eECCCCCEeC--chhccCCC-CCCCHHHHHHHHHHHH
Confidence 3 3344445543 99999999 4467999999987654
No 20
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.26 E-value=11 Score=36.64 Aligned_cols=60 Identities=18% Similarity=0.527 Sum_probs=46.0
Q ss_pred EEeecCCCCCCCCeEEEEeeee-ccCCCCccccCCCCCC---CCCCCCChHHHHHHHHHHHHHHhH
Q 016870 304 LFFLSTQFPKQQPSLMLQSSMY-FNSQGMPIKSPLLTDY---PWSPRWEHSQMAERTFEFLVDESV 365 (381)
Q Consensus 304 Hi~Lp~~FP~~qP~ltlQS~yH-~~s~g~p~~s~~~~~Y---PySPRW~~~eMa~R~~~fl~~~~~ 365 (381)
-+-.|..||=.+|.||+-..-- |..+-+.|-| ++|| -|.|-|+.+-...-+..|++|.-|
T Consensus 57 kl~FP~eyP~KPPaI~MiTPNGRFktntRLCLS--iSDfHPdsWNP~WsVStILtGLlSFM~e~~p 120 (244)
T KOG0894|consen 57 KLIFPPEYPFKPPAITMITPNGRFKTNTRLCLS--ISDFHPDSWNPGWSVSTILTGLLSFMTEDSP 120 (244)
T ss_pred EEeCCCCCCCCCCeeEEECCCCceecCceEEEe--ccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence 3557999999999999865421 3344455555 6777 599999999999999999988654
No 21
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.07 E-value=22 Score=32.44 Aligned_cols=93 Identities=17% Similarity=0.384 Sum_probs=57.8
Q ss_pred HHHHHHHHHhh--------hcCCCccccccccceEeeee-----eeCcceEEEEEeecCCCCCCCCeEEEEee-eecc--
Q 016870 264 VRRRFIEALAP--------LFGRPIETDSVFYRKSMFFV-----ASGAFSFLVLFFLSTQFPKQQPSLMLQSS-MYFN-- 327 (381)
Q Consensus 264 ~RrefIaaL~~--------~fG~~LEyDa~~f~k~slL~-----~~~~F~flvHi~Lp~~FP~~qP~ltlQS~-yH~~-- 327 (381)
+||+++.-|.. ..|.|+|=|-- .+-.+++ -+.+=+|=+-++....||..+|++-|-|. +|=|
T Consensus 5 ArrrLmrDfkrlqedpp~gisa~P~~~niM--~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvy 82 (152)
T KOG0419|consen 5 ARRRLMRDFKRLQEDPPAGISAAPVENNIM--EWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVY 82 (152)
T ss_pred HHHHHHHHHHHhhcCCCCCccCCCCcccee--eeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcC
Confidence 56677766653 24555554421 2222222 23355666666778999999999999996 4433
Q ss_pred CCCCccccCCCCCCCCCCCCChHHHHHHHHHHH
Q 016870 328 SQGMPIKSPLLTDYPWSPRWEHSQMAERTFEFL 360 (381)
Q Consensus 328 s~g~p~~s~~~~~YPySPRW~~~eMa~R~~~fl 360 (381)
..|.+|-- .+.| -|||-.|.+-...-|..-|
T Consensus 83 a~G~iClD-iLqN-rWsp~Ydva~ILtsiQslL 113 (152)
T KOG0419|consen 83 ADGSICLD-ILQN-RWSPTYDVASILTSIQSLL 113 (152)
T ss_pred CCCcchHH-HHhc-CCCCchhHHHHHHHHHHHh
Confidence 67999985 5656 7777777665555444333
No 22
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=50.38 E-value=69 Score=27.96 Aligned_cols=54 Identities=20% Similarity=0.399 Sum_probs=39.1
Q ss_pred cCCceeEEEEEcCCCCCCCCceEeCCCCCC---CcCCCCCCCCCCCchhhh--hhcccCCCCCcchH
Q 016870 50 CLDTIKWDVIYNAEFPHAPPDIIFGPEDED---FHPFYNESGGEGDSRSIK--NSLATWNNKDPTRL 111 (381)
Q Consensus 50 c~~~l~WdVIfd~~~P~~pPDfIF~~dD~~---F~p~~~~~~~~~~~~~~~--~sL~~Wd~~dp~~L 111 (381)
.+..+.-.++|...+|..||+|..- |.. +.| |...++ .|| .--..||..||++.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~--d~~~~~~~p-Hv~~~G-----~LCl~~~~~~~D~~~P~~~ 92 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLE--DPKQFPLLP-HVESDG-----KLCLLDEELVLDPWDPEGI 92 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEec--CccccCccC-eEcCCC-----eEEEecCCcccCccCHHHH
Confidence 7778999999999999999999995 544 456 443332 332 11457999999765
No 23
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.03 E-value=95 Score=29.09 Aligned_cols=87 Identities=21% Similarity=0.220 Sum_probs=59.8
Q ss_pred hcCCCccccccccceEeeeeeeCc-----ceEEEEEeecCCCCCCCCeEEEEe-eeecc--CCCCccccCCCC--CCCC-
Q 016870 275 LFGRPIETDSVFYRKSMFFVASGA-----FSFLVLFFLSTQFPKQQPSLMLQS-SMYFN--SQGMPIKSPLLT--DYPW- 343 (381)
Q Consensus 275 ~fG~~LEyDa~~f~k~slL~~~~~-----F~flvHi~Lp~~FP~~qP~ltlQS-~yH~~--s~g~p~~s~~~~--~YPy- 343 (381)
-|...|.=|..-|++=..++.-.| =.|=.|...|..||.-+|++.|-| .+|=| ..|..|.|-+.. |=||
T Consensus 24 gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~g 103 (171)
T KOG0425|consen 24 GFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHPPGDDPSG 103 (171)
T ss_pred ccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecCCCCCccc
Confidence 355567767666776555442221 136789999999999999999998 46744 789999873221 2233
Q ss_pred ----CCCCChHHHHHHHHHHHH
Q 016870 344 ----SPRWEHSQMAERTFEFLV 361 (381)
Q Consensus 344 ----SPRW~~~eMa~R~~~fl~ 361 (381)
+-||.|-.=++-|.--|.
T Consensus 104 yE~~~erW~Pv~tvetIllSiI 125 (171)
T KOG0425|consen 104 YELPSERWLPVQTVETILLSII 125 (171)
T ss_pred CCChhhccCCccchhHhHHHHH
Confidence 569999888877765543
No 24
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.70 E-value=66 Score=29.40 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=53.9
Q ss_pred ccceEeeeeeeCcce-----EEEEEeecCCCCCCCCeEEE-Eeeeecc--CCCCccccCCC------CCCCC-CCCCChH
Q 016870 286 FYRKSMFFVASGAFS-----FLVLFFLSTQFPKQQPSLML-QSSMYFN--SQGMPIKSPLL------TDYPW-SPRWEHS 350 (381)
Q Consensus 286 ~f~k~slL~~~~~F~-----flvHi~Lp~~FP~~qP~ltl-QS~yH~~--s~g~p~~s~~~------~~YPy-SPRW~~~ 350 (381)
+|.+-.++..-.+=| |=..+..|..||..+|.++| ++..|-| .+|+.|.|-.. +.|.- +-||++-
T Consensus 34 fF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPV 113 (165)
T KOG0426|consen 34 FFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPV 113 (165)
T ss_pred eeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChH
Confidence 666666655433333 45678899999999999999 4667744 78888877322 23443 4699999
Q ss_pred HHHHHHHHHHH
Q 016870 351 QMAERTFEFLV 361 (381)
Q Consensus 351 eMa~R~~~fl~ 361 (381)
+-+++|+--++
T Consensus 114 QSvEKILLSV~ 124 (165)
T KOG0426|consen 114 QSVEKILLSVV 124 (165)
T ss_pred HHHHHHHHHHH
Confidence 99999976655
No 25
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=30.97 E-value=1.2e+02 Score=27.79 Aligned_cols=54 Identities=15% Similarity=0.297 Sum_probs=38.9
Q ss_pred eEEEEEeecCCCCCCCCeEEEEee----eeccCCCCccccCCCCCCCCCCCCChHHHHHHHHHH
Q 016870 300 SFLVLFFLSTQFPKQQPSLMLQSS----MYFNSQGMPIKSPLLTDYPWSPRWEHSQMAERTFEF 359 (381)
Q Consensus 300 ~flvHi~Lp~~FP~~qP~ltlQS~----yH~~s~g~p~~s~~~~~YPySPRW~~~eMa~R~~~f 359 (381)
+|-+.|+.|..||-+-|+++|+.- =|.-|+|-.|-+ .+.| -|++..-+.-++--
T Consensus 62 ~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~-iL~d-----~WsPAmsv~SvClS 119 (161)
T KOG0427|consen 62 TYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLD-ILYD-----SWSPAMSVQSVCLS 119 (161)
T ss_pred EEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEE-eecc-----cCCcchhhHHHHHH
Confidence 488999999999999999999974 356689988887 3422 34444444444433
No 26
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.85 E-value=1.9e+02 Score=27.62 Aligned_cols=113 Identities=26% Similarity=0.380 Sum_probs=71.9
Q ss_pred CCCCCchHHHHHHH----HHHhcCCccEEEe----eeecCC-C-CCCCCceEEEEccccCCceeEEEEEcCCCCCCCCce
Q 016870 2 TYDGFPPFISAQLH----YLINHFAHPVRVE----QAWSGS-K-YSNTLDRFTLLIPYCLDTIKWDVIYNAEFPHAPPDI 71 (381)
Q Consensus 2 ~~~~~~p~i~~ql~----~l~~~~~~~ikv~----~~~sg~-~-~~~~~DRF~L~IPyc~~~l~WdVIfd~~~P~~pPDf 71 (381)
+-++|||-|-.||- .|-..-|..|||- ++..=| . .++. --||++--++-.+.-+-.+|..||-=
T Consensus 3 snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~------GTPYa~GlFRmKL~L~kDFP~sPPKg 76 (223)
T KOG0423|consen 3 SNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPV------GTPYANGLFRMKLALSKDFPHSPPKG 76 (223)
T ss_pred cccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCC------CCccccceeeehhhhcCCCCCCCCcc
Confidence 45789998877764 4666667788883 222222 1 1222 23777776777777888999999999
Q ss_pred EeCCCCCCCcCCCCCCCCCCCchhhhhhc-ccCCCC-----------------CcchHHH--HHHHHHHHHHHHHH
Q 016870 72 IFGPEDEDFHPFYNESGGEGDSRSIKNSL-ATWNNK-----------------DPTRLLA--LIWELRDQYMSYQR 127 (381)
Q Consensus 72 IF~~dD~~F~p~~~~~~~~~~~~~~~~sL-~~Wd~~-----------------dp~~Ll~--li~EL~~~Y~~yQ~ 127 (381)
.|. -.=|+|++. +++++- ++-| .+|++. +|++-|+ .=+-|++-|-+|-+
T Consensus 77 YFl--TKIFHPNVa-aNGEIC----VNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~ 145 (223)
T KOG0423|consen 77 YFL--TKIFHPNVA-ANGEIC----VNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYAR 145 (223)
T ss_pred eee--eeeccCCcc-cCceeh----hhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHH
Confidence 997 678999764 333222 2333 589986 5544433 22446778888854
No 27
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=22.46 E-value=40 Score=25.43 Aligned_cols=14 Identities=50% Similarity=0.648 Sum_probs=12.4
Q ss_pred CCcchHHHHHHHHH
Q 016870 106 KDPTRLLALIWELR 119 (381)
Q Consensus 106 ~dp~~Ll~li~EL~ 119 (381)
-||++|..+|+|||
T Consensus 35 VnPeaLA~vI~elr 48 (48)
T PF12554_consen 35 VNPEALAAVIKELR 48 (48)
T ss_pred CCHHHHHHHHHHhC
Confidence 48999999999986
No 28
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=22.24 E-value=1.3e+02 Score=22.90 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=22.7
Q ss_pred CCCCChHHHHHHHHHHHHHHhHhHHH
Q 016870 344 SPRWEHSQMAERTFEFLVDESVNFKK 369 (381)
Q Consensus 344 SPRW~~~eMa~R~~~fl~~~~~~Fk~ 369 (381)
-|+-||+||-.|++.=....+-||-=
T Consensus 8 ~pk~DPeE~k~kmR~dvissvrnFli 33 (51)
T PF15178_consen 8 GPKMDPEEMKRKMREDVISSVRNFLI 33 (51)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999888888888853
Done!