Query 016871
Match_columns 381
No_of_seqs 279 out of 2411
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:33:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016871.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016871hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02612 phytoene desaturase 100.0 4.6E-40 1E-44 321.0 37.5 364 16-379 52-415 (567)
2 TIGR02731 phytoene_desat phyto 100.0 1E-33 2.3E-38 272.1 34.1 319 59-379 1-324 (453)
3 TIGR02732 zeta_caro_desat caro 100.0 6.4E-30 1.4E-34 245.3 32.1 308 59-369 1-323 (474)
4 PLN02487 zeta-carotene desatur 100.0 4.6E-29 9.9E-34 241.1 31.5 309 57-369 75-399 (569)
5 PRK07233 hypothetical protein; 100.0 3.8E-27 8.1E-32 225.9 29.2 287 59-368 1-290 (434)
6 PRK12416 protoporphyrinogen ox 100.0 1.9E-27 4.2E-32 229.3 26.5 297 58-377 2-324 (463)
7 TIGR00562 proto_IX_ox protopor 100.0 3.2E-27 6.8E-32 228.1 27.2 294 57-377 2-325 (462)
8 PRK07208 hypothetical protein; 100.0 9.7E-27 2.1E-31 225.5 30.5 288 56-368 3-317 (479)
9 PRK11883 protoporphyrinogen ox 100.0 6.2E-27 1.3E-31 225.5 26.6 286 58-367 1-308 (451)
10 COG1232 HemY Protoporphyrinoge 100.0 6.6E-27 1.4E-31 217.0 23.1 278 58-366 1-300 (444)
11 PLN02576 protoporphyrinogen ox 100.0 1.8E-26 3.9E-31 224.6 25.8 294 53-370 8-335 (496)
12 COG3349 Uncharacterized conser 99.9 1.2E-25 2.6E-30 207.6 20.4 307 58-367 1-315 (485)
13 COG2907 Predicted NAD/FAD-bind 99.9 1.6E-24 3.5E-29 188.0 22.4 282 56-360 7-301 (447)
14 TIGR03467 HpnE squalene-associ 99.9 1.7E-23 3.6E-28 199.8 28.8 294 71-377 1-297 (419)
15 COG1231 Monoamine oxidase [Ami 99.9 4.6E-25 1E-29 200.0 16.9 290 55-372 5-304 (450)
16 TIGR02734 crtI_fam phytoene de 99.9 4.4E-24 9.6E-29 207.9 24.6 301 60-377 1-328 (502)
17 PLN02268 probable polyamine ox 99.9 1.5E-24 3.2E-29 207.7 20.6 285 58-375 1-299 (435)
18 TIGR02733 desat_CrtD C-3',4' d 99.9 7.6E-24 1.6E-28 205.7 25.6 298 58-366 2-331 (492)
19 KOG0029 Amine oxidase [Seconda 99.9 3.4E-23 7.3E-28 197.0 23.1 294 54-376 12-320 (501)
20 TIGR02730 carot_isom carotene 99.9 1.4E-22 3.1E-27 196.6 27.7 297 58-367 1-325 (493)
21 PLN02529 lysine-specific histo 99.9 5E-22 1.1E-26 196.0 27.2 286 55-377 158-457 (738)
22 PLN02676 polyamine oxidase 99.9 4.3E-22 9.2E-27 191.5 22.3 286 55-370 24-328 (487)
23 PLN02568 polyamine oxidase 99.9 1E-21 2.2E-26 190.1 20.9 298 56-369 4-341 (539)
24 COG1233 Phytoene dehydrogenase 99.9 9.7E-22 2.1E-26 189.3 18.3 264 56-337 2-288 (487)
25 PLN02328 lysine-specific histo 99.9 1E-20 2.2E-25 187.7 25.5 280 55-370 236-529 (808)
26 PLN03000 amine oxidase 99.9 1.6E-20 3.5E-25 186.0 24.9 284 56-377 183-481 (881)
27 KOG1276 Protoporphyrinogen oxi 99.9 2.9E-20 6.3E-25 166.1 20.1 308 55-378 9-356 (491)
28 KOG0685 Flavin-containing amin 99.9 4.4E-20 9.5E-25 167.6 19.4 282 55-370 19-329 (498)
29 PF01593 Amino_oxidase: Flavin 99.8 2.3E-20 5E-25 178.8 12.1 295 67-371 1-306 (450)
30 PRK13977 myosin-cross-reactive 99.8 7.3E-19 1.6E-23 167.3 20.7 264 54-337 19-300 (576)
31 PLN02976 amine oxidase 99.8 1E-18 2.3E-23 178.1 22.8 288 56-370 692-1039(1713)
32 PTZ00363 rab-GDP dissociation 99.8 4.8E-18 1E-22 160.2 24.6 258 55-327 2-287 (443)
33 TIGR03329 Phn_aa_oxid putative 99.7 6.6E-17 1.4E-21 155.6 16.3 61 271-336 182-242 (460)
34 KOG4254 Phytoene desaturase [C 99.7 6E-17 1.3E-21 145.7 14.1 93 258-354 251-344 (561)
35 COG3380 Predicted NAD/FAD-depe 99.7 8.7E-18 1.9E-22 141.8 5.3 204 58-378 2-209 (331)
36 COG0579 Predicted dehydrogenas 99.7 1.5E-15 3.3E-20 140.5 15.2 100 271-379 152-252 (429)
37 COG2081 Predicted flavoprotein 99.6 2.2E-15 4.8E-20 135.2 13.3 164 56-328 2-165 (408)
38 PF01266 DAO: FAD dependent ox 99.6 3.3E-15 7.1E-20 139.3 14.7 63 271-336 146-208 (358)
39 TIGR01373 soxB sarcosine oxida 99.6 8E-15 1.7E-19 139.3 11.6 59 271-330 182-240 (407)
40 PRK11101 glpA sn-glycerol-3-ph 99.6 2E-14 4.3E-19 140.7 13.7 62 271-334 148-214 (546)
41 TIGR03364 HpnW_proposed FAD de 99.6 3.9E-14 8.5E-19 132.7 13.8 59 271-337 144-203 (365)
42 PRK00711 D-amino acid dehydrog 99.6 5.9E-15 1.3E-19 140.7 8.0 58 271-330 200-257 (416)
43 TIGR01377 soxA_mon sarcosine o 99.6 8.4E-15 1.8E-19 138.0 8.5 61 271-335 144-204 (380)
44 PF03486 HI0933_like: HI0933-l 99.6 8.1E-15 1.8E-19 137.1 8.3 58 271-329 108-165 (409)
45 TIGR00031 UDP-GALP_mutase UDP- 99.6 3.1E-13 6.7E-18 124.9 18.2 237 58-330 2-247 (377)
46 KOG2820 FAD-dependent oxidored 99.5 2E-14 4.4E-19 125.2 9.6 66 271-337 152-218 (399)
47 PRK12409 D-amino acid dehydrog 99.5 5.4E-14 1.2E-18 133.8 13.2 58 271-330 196-258 (410)
48 PRK11259 solA N-methyltryptoph 99.5 1.7E-14 3.8E-19 135.6 8.9 62 271-336 148-209 (376)
49 PF13450 NAD_binding_8: NAD(P) 99.5 1.6E-14 3.4E-19 99.7 6.1 66 62-128 1-68 (68)
50 PRK11728 hydroxyglutarate oxid 99.5 5.4E-14 1.2E-18 132.9 11.5 57 271-330 148-204 (393)
51 COG0578 GlpA Glycerol-3-phosph 99.5 5.1E-13 1.1E-17 126.3 15.5 87 271-365 163-254 (532)
52 PF00996 GDI: GDP dissociation 99.5 8.8E-12 1.9E-16 116.5 22.8 255 55-329 2-287 (438)
53 PF06100 Strep_67kDa_ant: Stre 99.5 2E-12 4.2E-17 120.0 17.8 262 57-336 2-280 (500)
54 PTZ00383 malate:quinone oxidor 99.5 9.3E-13 2E-17 126.4 15.9 59 271-331 210-274 (497)
55 COG0665 DadA Glycine/D-amino a 99.5 2.4E-12 5.1E-17 121.6 16.4 58 271-331 155-213 (387)
56 PRK01747 mnmC bifunctional tRN 99.5 3.8E-13 8.2E-18 135.1 11.4 62 271-336 407-468 (662)
57 TIGR01320 mal_quin_oxido malat 99.4 4.1E-12 8.9E-17 122.2 16.6 62 271-334 177-243 (483)
58 PLN02464 glycerol-3-phosphate 99.4 3.7E-12 8E-17 126.3 16.1 63 271-334 231-299 (627)
59 PRK12266 glpD glycerol-3-phosp 99.4 2E-12 4.3E-17 125.7 13.5 58 271-330 154-216 (508)
60 PRK13369 glycerol-3-phosphate 99.4 1.2E-12 2.5E-17 127.4 11.6 61 271-334 154-218 (502)
61 PRK07121 hypothetical protein; 99.4 1.6E-11 3.4E-16 119.4 19.5 60 271-330 176-239 (492)
62 PRK13339 malate:quinone oxidor 99.4 5.1E-12 1.1E-16 120.9 15.4 63 271-334 183-250 (497)
63 COG1635 THI4 Ribulose 1,5-bisp 99.4 8E-12 1.7E-16 102.9 13.0 41 56-96 29-69 (262)
64 KOG2844 Dimethylglycine dehydr 99.4 1.9E-12 4.1E-17 122.1 10.4 58 271-330 186-243 (856)
65 PRK04176 ribulose-1,5-biphosph 99.4 6.5E-12 1.4E-16 110.8 13.1 59 271-329 103-172 (257)
66 PRK05257 malate:quinone oxidor 99.4 1.6E-12 3.4E-17 125.2 9.5 62 271-334 182-249 (494)
67 TIGR01813 flavo_cyto_c flavocy 99.4 7.6E-12 1.7E-16 120.1 14.2 59 272-330 130-192 (439)
68 PRK06481 fumarate reductase fl 99.4 1E-11 2.2E-16 120.8 14.3 56 273-329 191-250 (506)
69 TIGR00292 thiazole biosynthesi 99.3 2.7E-11 5.9E-16 106.6 14.8 41 56-96 20-60 (254)
70 PRK08274 tricarballylate dehyd 99.3 3E-11 6.4E-16 116.9 15.6 58 271-329 130-191 (466)
71 COG0562 Glf UDP-galactopyranos 99.3 3.3E-11 7.1E-16 104.8 12.2 214 57-300 1-223 (374)
72 PF00890 FAD_binding_2: FAD bi 99.3 1.5E-10 3.2E-15 110.5 17.1 59 272-331 141-204 (417)
73 PF01946 Thi4: Thi4 family; PD 99.3 4E-11 8.7E-16 99.5 10.4 41 56-96 16-56 (230)
74 PRK12845 3-ketosteroid-delta-1 99.3 1.6E-10 3.5E-15 113.4 16.4 58 272-330 217-278 (564)
75 PRK08773 2-octaprenyl-3-methyl 99.2 1.2E-10 2.5E-15 110.3 14.3 56 272-329 113-168 (392)
76 PRK12835 3-ketosteroid-delta-1 99.2 8.4E-10 1.8E-14 108.9 19.8 59 272-330 213-275 (584)
77 PRK05714 2-octaprenyl-3-methyl 99.2 1.3E-10 2.7E-15 110.5 13.3 62 273-336 113-175 (405)
78 TIGR00275 flavoprotein, HI0933 99.2 1.1E-10 2.3E-15 110.4 12.1 55 272-329 105-159 (400)
79 PRK10157 putative oxidoreducta 99.2 1E-10 2.3E-15 111.5 12.0 55 273-329 109-163 (428)
80 PF13738 Pyr_redox_3: Pyridine 99.2 9.1E-11 2E-15 100.4 10.4 50 278-329 88-137 (203)
81 TIGR03378 glycerol3P_GlpB glyc 99.2 1.7E-10 3.7E-15 107.2 12.8 77 258-335 245-327 (419)
82 PRK12839 hypothetical protein; 99.2 1.1E-09 2.3E-14 107.9 18.9 60 271-330 213-276 (572)
83 PRK06134 putative FAD-binding 99.2 1.3E-09 2.8E-14 107.8 19.6 59 271-330 216-278 (581)
84 PRK06175 L-aspartate oxidase; 99.2 4.5E-10 9.7E-15 107.1 15.7 57 272-329 128-188 (433)
85 COG0644 FixC Dehydrogenases (f 99.2 3.8E-10 8.3E-15 106.7 14.9 63 273-336 96-159 (396)
86 PRK07573 sdhA succinate dehydr 99.2 4.8E-10 1.1E-14 111.6 16.3 54 276-330 174-232 (640)
87 PRK07804 L-aspartate oxidase; 99.2 1.4E-09 3.1E-14 106.6 19.0 58 272-329 144-209 (541)
88 PRK06184 hypothetical protein; 99.2 1.5E-10 3.3E-15 113.0 12.0 63 274-336 111-175 (502)
89 PRK06847 hypothetical protein; 99.2 1.1E-10 2.3E-15 109.9 10.2 55 273-329 108-162 (375)
90 PRK06834 hypothetical protein; 99.2 1.7E-10 3.6E-15 111.7 11.6 56 273-330 101-156 (488)
91 PRK08163 salicylate hydroxylas 99.2 3.6E-10 7.8E-15 107.1 13.6 55 273-329 110-165 (396)
92 PRK07395 L-aspartate oxidase; 99.2 7.4E-10 1.6E-14 108.5 15.6 58 272-329 134-196 (553)
93 PRK07364 2-octaprenyl-6-methox 99.2 7E-10 1.5E-14 105.8 15.2 38 55-92 16-53 (415)
94 PTZ00139 Succinate dehydrogena 99.2 1.5E-09 3.2E-14 107.8 18.0 58 272-329 166-228 (617)
95 PRK08958 sdhA succinate dehydr 99.2 5.8E-10 1.3E-14 110.2 15.0 59 272-330 143-206 (588)
96 PRK12844 3-ketosteroid-delta-1 99.2 2.3E-09 4.9E-14 105.5 19.0 58 272-330 208-269 (557)
97 PRK12842 putative succinate de 99.2 2.4E-09 5.3E-14 105.9 18.9 58 272-330 214-275 (574)
98 PRK06452 sdhA succinate dehydr 99.2 7.3E-10 1.6E-14 109.2 15.0 58 272-330 136-198 (566)
99 TIGR01988 Ubi-OHases Ubiquinon 99.2 5.9E-10 1.3E-14 105.2 13.9 55 273-329 107-162 (385)
100 PRK08244 hypothetical protein; 99.2 3.7E-10 8.1E-15 110.0 12.8 62 274-335 102-165 (493)
101 PRK07843 3-ketosteroid-delta-1 99.1 2.2E-09 4.8E-14 105.6 18.3 43 56-98 6-48 (557)
102 PRK07608 ubiquinone biosynthes 99.1 5E-10 1.1E-14 105.9 13.3 61 272-335 111-173 (388)
103 PRK07045 putative monooxygenas 99.1 3.2E-10 6.9E-15 107.2 11.9 61 273-333 107-169 (388)
104 PRK09078 sdhA succinate dehydr 99.1 1.8E-09 3.9E-14 107.0 17.5 58 273-330 150-212 (598)
105 TIGR00551 nadB L-aspartate oxi 99.1 2E-09 4.4E-14 104.4 17.5 58 272-330 128-189 (488)
106 TIGR01812 sdhA_frdA_Gneg succi 99.1 9.6E-10 2.1E-14 108.8 15.4 58 272-330 129-191 (566)
107 PRK07333 2-octaprenyl-6-methox 99.1 1.7E-10 3.6E-15 109.7 9.7 56 272-329 111-166 (403)
108 PF04820 Trp_halogenase: Trypt 99.1 1.1E-09 2.5E-14 104.7 15.3 56 273-329 155-210 (454)
109 PLN00128 Succinate dehydrogena 99.1 1.2E-09 2.6E-14 108.6 15.8 58 272-329 187-249 (635)
110 TIGR01984 UbiH 2-polyprenyl-6- 99.1 3.6E-10 7.8E-15 106.6 11.3 63 271-335 104-168 (382)
111 TIGR02032 GG-red-SF geranylger 99.1 8.6E-10 1.9E-14 100.0 13.3 56 273-329 92-147 (295)
112 PRK07190 hypothetical protein; 99.1 6.5E-10 1.4E-14 107.5 13.0 59 276-336 113-172 (487)
113 PRK07057 sdhA succinate dehydr 99.1 3.9E-09 8.4E-14 104.5 18.6 58 272-329 148-210 (591)
114 PRK10015 oxidoreductase; Provi 99.1 5.5E-10 1.2E-14 106.4 12.2 55 273-329 109-163 (429)
115 PRK12843 putative FAD-binding 99.1 8.8E-09 1.9E-13 101.9 20.9 59 271-330 220-282 (578)
116 PRK07588 hypothetical protein; 99.1 8.6E-10 1.9E-14 104.3 13.1 53 274-329 105-157 (391)
117 PRK08020 ubiF 2-octaprenyl-3-m 99.1 1.2E-09 2.6E-14 103.3 13.9 55 273-329 113-168 (391)
118 PRK06263 sdhA succinate dehydr 99.1 2.5E-09 5.4E-14 105.2 16.3 58 272-329 134-196 (543)
119 PRK05329 anaerobic glycerol-3- 99.1 8.3E-10 1.8E-14 103.9 12.2 76 258-334 241-322 (422)
120 PRK08013 oxidoreductase; Provi 99.1 6.4E-10 1.4E-14 105.4 11.4 62 273-336 112-175 (400)
121 PRK08401 L-aspartate oxidase; 99.1 5.2E-09 1.1E-13 101.0 17.7 56 272-330 120-175 (466)
122 PLN02815 L-aspartate oxidase 99.1 3.2E-09 6.8E-14 104.6 16.3 58 272-329 155-221 (594)
123 PRK07803 sdhA succinate dehydr 99.1 5.1E-09 1.1E-13 104.3 17.8 41 56-96 7-47 (626)
124 PLN02463 lycopene beta cyclase 99.1 1.9E-09 4.1E-14 102.6 13.9 54 273-329 115-168 (447)
125 PRK12837 3-ketosteroid-delta-1 99.1 8.4E-09 1.8E-13 100.7 18.8 42 55-97 5-46 (513)
126 PRK05249 soluble pyridine nucl 99.1 1.5E-09 3.3E-14 104.9 13.4 60 272-333 216-275 (461)
127 PRK05945 sdhA succinate dehydr 99.1 2E-09 4.3E-14 106.4 14.3 57 272-329 135-196 (575)
128 PLN02172 flavin-containing mon 99.1 1.8E-09 3.8E-14 103.4 13.5 44 55-98 8-51 (461)
129 PRK09126 hypothetical protein; 99.1 1.3E-09 2.9E-14 103.1 12.6 60 274-335 112-173 (392)
130 TIGR02485 CobZ_N-term precorri 99.1 3.5E-09 7.6E-14 101.4 15.2 59 271-329 122-182 (432)
131 PRK05192 tRNA uridine 5-carbox 99.1 1.1E-09 2.4E-14 106.1 11.5 56 273-330 101-157 (618)
132 PRK08626 fumarate reductase fl 99.1 1.5E-09 3.3E-14 108.3 12.8 57 273-330 159-220 (657)
133 COG3075 GlpB Anaerobic glycero 99.1 2.9E-09 6.3E-14 93.1 12.7 79 258-337 240-324 (421)
134 COG0654 UbiH 2-polyprenyl-6-me 99.1 2.7E-09 5.8E-14 100.7 13.7 63 272-336 104-169 (387)
135 PRK08641 sdhA succinate dehydr 99.1 6.9E-09 1.5E-13 102.7 17.1 41 57-97 3-43 (589)
136 PRK12834 putative FAD-binding 99.1 4.8E-09 1E-13 103.3 15.9 42 56-97 3-46 (549)
137 PRK06069 sdhA succinate dehydr 99.1 5.7E-09 1.2E-13 103.3 16.3 57 272-329 137-199 (577)
138 PF12831 FAD_oxidored: FAD dep 99.0 1.8E-10 4E-15 109.8 5.4 40 59-98 1-40 (428)
139 PRK08205 sdhA succinate dehydr 99.0 3.5E-09 7.6E-14 104.8 14.7 59 272-330 140-206 (583)
140 PRK06183 mhpA 3-(3-hydroxyphen 99.0 3.5E-09 7.6E-14 104.2 14.4 63 55-133 8-70 (538)
141 PRK08132 FAD-dependent oxidore 99.0 2E-09 4.4E-14 106.2 12.6 64 54-133 20-83 (547)
142 PRK07494 2-octaprenyl-6-methox 99.0 1.2E-09 2.6E-14 103.3 10.5 55 273-329 112-166 (388)
143 TIGR01292 TRX_reduct thioredox 99.0 2.1E-09 4.5E-14 97.8 11.8 49 278-329 63-111 (300)
144 PTZ00306 NADH-dependent fumara 99.0 4.8E-09 1E-13 111.3 16.1 43 55-97 407-449 (1167)
145 PRK08071 L-aspartate oxidase; 99.0 5.6E-09 1.2E-13 101.7 15.2 56 272-329 130-189 (510)
146 PRK07236 hypothetical protein; 99.0 3.3E-09 7.1E-14 100.2 13.1 62 56-132 5-66 (386)
147 PRK12831 putative oxidoreducta 99.0 1.1E-08 2.3E-13 98.5 16.7 44 54-97 137-180 (464)
148 TIGR01811 sdhA_Bsu succinate d 99.0 4.4E-09 9.5E-14 104.2 14.3 57 273-329 130-195 (603)
149 PRK08849 2-octaprenyl-3-methyl 99.0 1.1E-09 2.3E-14 103.3 9.5 53 275-329 113-166 (384)
150 PLN02661 Putative thiazole syn 99.0 6.2E-09 1.4E-13 94.3 13.9 41 55-95 90-131 (357)
151 PRK06126 hypothetical protein; 99.0 5E-09 1.1E-13 103.4 14.4 63 55-133 5-67 (545)
152 PRK06185 hypothetical protein; 99.0 5.8E-09 1.3E-13 99.2 14.4 63 273-336 109-176 (407)
153 PRK05732 2-octaprenyl-6-methox 99.0 2.4E-09 5.1E-14 101.5 11.2 53 275-329 115-168 (395)
154 PRK07251 pyridine nucleotide-d 99.0 5.9E-09 1.3E-13 100.1 13.8 41 57-97 3-44 (438)
155 PRK07512 L-aspartate oxidase; 99.0 6E-09 1.3E-13 101.6 13.9 58 271-329 135-196 (513)
156 PLN02697 lycopene epsilon cycl 99.0 5.6E-09 1.2E-13 101.1 13.5 56 273-330 193-248 (529)
157 PRK08275 putative oxidoreducta 99.0 1.3E-08 2.8E-13 100.3 16.3 57 273-329 138-199 (554)
158 PRK08243 4-hydroxybenzoate 3-m 99.0 7.1E-09 1.5E-13 98.1 13.7 61 57-133 2-64 (392)
159 PRK06416 dihydrolipoamide dehy 99.0 3.8E-09 8.1E-14 102.2 11.9 60 273-334 214-276 (462)
160 PRK06116 glutathione reductase 99.0 2.2E-09 4.8E-14 103.3 10.2 56 273-329 209-264 (450)
161 TIGR01350 lipoamide_DH dihydro 99.0 6.5E-09 1.4E-13 100.6 13.4 56 272-329 211-268 (461)
162 PRK11445 putative oxidoreducta 99.0 3.5E-08 7.6E-13 91.9 17.7 61 58-131 2-62 (351)
163 PF13454 NAD_binding_9: FAD-NA 99.0 9.6E-09 2.1E-13 83.8 12.3 50 276-328 105-155 (156)
164 PRK09231 fumarate reductase fl 99.0 1.4E-08 3.1E-13 100.3 15.9 56 273-329 134-195 (582)
165 PRK07818 dihydrolipoamide dehy 99.0 7E-09 1.5E-13 100.3 13.4 55 273-329 214-272 (466)
166 PRK06370 mercuric reductase; V 99.0 3.4E-09 7.4E-14 102.4 11.0 57 273-329 213-270 (463)
167 PRK06854 adenylylsulfate reduc 99.0 1.8E-08 4E-13 100.0 16.4 58 272-330 132-195 (608)
168 TIGR01421 gluta_reduc_1 glutat 99.0 1.1E-08 2.3E-13 98.4 14.3 61 272-333 207-268 (450)
169 PF01494 FAD_binding_3: FAD bi 99.0 3.1E-10 6.8E-15 105.6 3.7 64 273-336 112-179 (356)
170 TIGR03140 AhpF alkyl hydropero 99.0 3.5E-09 7.5E-14 103.5 11.0 52 276-329 271-322 (515)
171 COG4716 Myosin-crossreactive a 99.0 2.4E-09 5.2E-14 95.1 8.5 255 55-328 20-290 (587)
172 PRK08850 2-octaprenyl-6-methox 99.0 1.2E-08 2.6E-13 97.0 14.1 61 274-336 113-175 (405)
173 TIGR01176 fum_red_Fp fumarate 99.0 2.1E-08 4.5E-13 99.0 16.1 57 272-329 132-194 (580)
174 PRK06617 2-octaprenyl-6-methox 99.0 2.3E-09 5E-14 100.7 9.0 60 273-335 105-166 (374)
175 PF01134 GIDA: Glucose inhibit 99.0 1.5E-08 3.2E-13 93.4 13.9 55 273-329 96-151 (392)
176 PRK15317 alkyl hydroperoxide r 99.0 4.2E-09 9.1E-14 103.0 11.1 53 275-329 269-321 (517)
177 TIGR03219 salicylate_mono sali 99.0 3.2E-09 6.8E-14 101.2 9.7 55 273-331 106-160 (414)
178 PRK06753 hypothetical protein; 99.0 1.2E-08 2.6E-13 95.9 13.6 36 58-93 1-36 (373)
179 PRK12779 putative bifunctional 98.9 6.5E-09 1.4E-13 107.3 12.6 44 55-98 304-347 (944)
180 PF00732 GMC_oxred_N: GMC oxid 98.9 1E-08 2.2E-13 93.2 12.6 62 276-337 196-265 (296)
181 COG2072 TrkA Predicted flavopr 98.9 8.4E-09 1.8E-13 98.4 12.4 45 54-98 5-50 (443)
182 KOG2852 Possible oxidoreductas 98.9 2.6E-09 5.7E-14 91.6 8.0 49 56-107 9-63 (380)
183 PRK06115 dihydrolipoamide dehy 98.9 7.1E-09 1.5E-13 100.1 11.9 41 57-97 3-43 (466)
184 TIGR01989 COQ6 Ubiquinone bios 98.9 1E-08 2.2E-13 98.3 12.8 63 273-335 118-189 (437)
185 TIGR01424 gluta_reduc_2 glutat 98.9 9E-09 1.9E-13 98.9 12.2 41 57-98 2-42 (446)
186 TIGR01316 gltA glutamate synth 98.9 2.4E-08 5.3E-13 95.9 15.1 44 54-97 130-173 (449)
187 PRK08010 pyridine nucleotide-d 98.9 2.3E-08 4.9E-13 96.1 14.9 57 272-331 199-255 (441)
188 TIGR01790 carotene-cycl lycope 98.9 1.6E-08 3.4E-13 95.7 13.4 57 272-330 85-141 (388)
189 PRK09077 L-aspartate oxidase; 98.9 5.8E-08 1.2E-12 95.3 17.5 58 273-330 139-207 (536)
190 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 2.5E-08 5.5E-13 94.1 14.2 61 57-133 2-64 (390)
191 PRK05868 hypothetical protein; 98.9 5.3E-09 1.1E-13 98.1 9.4 50 284-335 116-166 (372)
192 PRK12769 putative oxidoreducta 98.9 3.5E-08 7.6E-13 99.2 15.8 44 55-98 325-368 (654)
193 TIGR02053 MerA mercuric reduct 98.9 1.1E-08 2.4E-13 98.9 11.5 55 273-329 208-265 (463)
194 KOG2415 Electron transfer flav 98.9 1.3E-08 2.9E-13 91.7 10.8 65 271-335 182-263 (621)
195 PRK09897 hypothetical protein; 98.9 3.6E-08 7.8E-13 95.5 14.4 55 273-329 108-165 (534)
196 KOG1399 Flavin-containing mono 98.9 2.3E-08 4.9E-13 94.3 12.6 43 56-98 5-47 (448)
197 TIGR01372 soxA sarcosine oxida 98.9 1.7E-07 3.6E-12 98.3 20.2 43 56-98 162-204 (985)
198 PTZ00058 glutathione reductase 98.9 2.4E-09 5.2E-14 104.6 6.2 56 273-329 279-335 (561)
199 TIGR02023 BchP-ChlP geranylger 98.9 2.2E-08 4.7E-13 94.6 12.3 32 58-89 1-32 (388)
200 PRK06475 salicylate hydroxylas 98.9 1.3E-08 2.8E-13 96.6 10.8 60 58-133 3-62 (400)
201 KOG2404 Fumarate reductase, fl 98.9 3.3E-08 7.1E-13 86.3 12.1 59 272-331 139-207 (477)
202 COG1249 Lpd Pyruvate/2-oxoglut 98.9 6.2E-09 1.3E-13 98.5 8.0 70 258-329 194-271 (454)
203 PF06039 Mqo: Malate:quinone o 98.9 1.7E-08 3.8E-13 93.1 10.5 60 271-332 180-246 (488)
204 PRK07538 hypothetical protein; 98.9 5.4E-08 1.2E-12 92.7 14.3 59 58-132 1-59 (413)
205 TIGR00136 gidA glucose-inhibit 98.9 2.6E-08 5.6E-13 96.6 12.0 58 272-330 96-154 (617)
206 PRK11749 dihydropyrimidine deh 98.8 1.9E-07 4.1E-12 90.1 18.1 43 55-97 138-180 (457)
207 PRK12775 putative trifunctiona 98.8 6.2E-08 1.3E-12 101.1 15.7 43 56-98 429-471 (1006)
208 PRK12778 putative bifunctional 98.8 8.4E-08 1.8E-12 98.1 16.3 43 55-97 429-471 (752)
209 PRK06327 dihydrolipoamide dehy 98.8 2.6E-08 5.7E-13 96.5 11.9 33 56-88 3-35 (475)
210 TIGR03143 AhpF_homolog putativ 98.8 1.8E-08 3.8E-13 99.3 10.4 40 56-96 3-42 (555)
211 COG1252 Ndh NADH dehydrogenase 98.8 7.9E-08 1.7E-12 89.0 14.0 53 271-329 208-261 (405)
212 PRK05976 dihydrolipoamide dehy 98.8 4.3E-08 9.4E-13 95.0 12.7 42 56-98 3-44 (472)
213 PF00743 FMO-like: Flavin-bind 98.8 1.7E-08 3.7E-13 98.1 9.8 41 58-98 2-42 (531)
214 PRK06467 dihydrolipoamide dehy 98.8 1.9E-07 4.1E-12 90.3 17.0 42 56-97 3-44 (471)
215 PRK06996 hypothetical protein; 98.8 6.9E-08 1.5E-12 91.5 13.6 61 273-335 116-181 (398)
216 TIGR02028 ChlP geranylgeranyl 98.8 3.3E-08 7.1E-13 93.5 11.3 36 58-93 1-36 (398)
217 KOG2853 Possible oxidoreductas 98.8 4.2E-08 9.1E-13 86.3 10.7 38 55-92 84-125 (509)
218 PLN02507 glutathione reductase 98.8 4.2E-08 9E-13 95.4 12.0 56 272-329 244-299 (499)
219 TIGR01318 gltD_gamma_fam gluta 98.8 5.7E-07 1.2E-11 86.8 19.2 44 55-98 139-182 (467)
220 TIGR02462 pyranose_ox pyranose 98.8 3.3E-07 7.1E-12 88.8 17.3 38 58-95 1-38 (544)
221 PLN00093 geranylgeranyl diphos 98.8 1.8E-07 3.8E-12 89.6 15.4 37 54-90 36-72 (450)
222 PRK12809 putative oxidoreducta 98.8 1.7E-07 3.6E-12 94.0 15.7 44 55-98 308-351 (639)
223 PLN02985 squalene monooxygenas 98.8 1.7E-07 3.6E-12 91.3 15.2 64 54-133 40-103 (514)
224 PRK08294 phenol 2-monooxygenas 98.8 7.2E-08 1.6E-12 96.2 12.9 61 55-133 30-93 (634)
225 KOG1439 RAB proteins geranylge 98.8 1.7E-07 3.6E-12 84.5 13.6 252 56-324 3-283 (440)
226 PRK12810 gltD glutamate syntha 98.8 2.9E-07 6.3E-12 89.1 16.2 43 55-97 141-183 (471)
227 COG0492 TrxB Thioredoxin reduc 98.8 1.6E-07 3.6E-12 84.6 13.1 51 275-329 64-114 (305)
228 TIGR02061 aprA adenosine phosp 98.7 3E-07 6.4E-12 90.9 15.9 57 273-329 127-190 (614)
229 PRK10262 thioredoxin reductase 98.7 7.5E-08 1.6E-12 88.5 11.1 42 55-97 4-45 (321)
230 KOG0042 Glycerol-3-phosphate d 98.7 7.4E-09 1.6E-13 96.2 4.2 70 260-329 212-286 (680)
231 TIGR01810 betA choline dehydro 98.7 1.7E-07 3.8E-12 92.1 13.6 59 276-335 197-260 (532)
232 TIGR02352 thiamin_ThiO glycine 98.7 2.7E-07 5.8E-12 85.4 14.0 63 271-336 136-198 (337)
233 PF05834 Lycopene_cycl: Lycope 98.7 1.4E-07 3.1E-12 88.5 12.1 54 273-329 88-141 (374)
234 TIGR03197 MnmC_Cterm tRNA U-34 98.7 9.8E-09 2.1E-13 96.7 4.0 62 271-336 134-195 (381)
235 PLN02927 antheraxanthin epoxid 98.7 6E-08 1.3E-12 95.8 9.5 36 55-90 79-114 (668)
236 PLN02546 glutathione reductase 98.7 1.2E-08 2.6E-13 99.8 4.1 60 273-333 294-353 (558)
237 PF00070 Pyr_redox: Pyridine n 98.7 3.6E-07 7.7E-12 65.4 10.6 33 59-91 1-33 (80)
238 PRK12771 putative glutamate sy 98.7 2.6E-06 5.6E-11 84.4 19.7 43 55-97 135-177 (564)
239 PRK02106 choline dehydrogenase 98.7 4.4E-07 9.4E-12 89.8 14.1 36 56-91 4-40 (560)
240 KOG0405 Pyridine nucleotide-di 98.7 8.1E-08 1.8E-12 84.8 7.7 47 53-99 16-62 (478)
241 KOG1335 Dihydrolipoamide dehyd 98.6 4.6E-07 1E-11 81.1 12.2 43 56-98 38-80 (506)
242 COG5044 MRS6 RAB proteins gera 98.6 2E-06 4.3E-11 76.8 16.0 249 56-326 5-280 (434)
243 PRK13800 putative oxidoreducta 98.6 1.2E-06 2.6E-11 91.1 17.2 36 56-91 12-47 (897)
244 PRK12814 putative NADPH-depend 98.6 2.1E-06 4.7E-11 86.2 17.9 43 55-97 191-233 (652)
245 KOG2665 Predicted FAD-dependen 98.6 3.2E-07 7E-12 80.1 9.9 58 272-329 196-256 (453)
246 COG2509 Uncharacterized FAD-de 98.6 2.4E-07 5.2E-12 85.0 9.4 58 271-329 172-229 (486)
247 PRK06912 acoL dihydrolipoamide 98.6 1.1E-06 2.4E-11 84.8 14.0 55 272-329 211-267 (458)
248 TIGR03377 glycerol3P_GlpA glyc 98.6 2.8E-07 6.2E-12 90.3 9.5 62 271-334 127-193 (516)
249 COG1053 SdhA Succinate dehydro 98.5 1.1E-06 2.3E-11 85.9 13.0 44 55-98 4-47 (562)
250 KOG2614 Kynurenine 3-monooxyge 98.5 8.7E-07 1.9E-11 80.6 11.0 39 57-95 2-40 (420)
251 PRK07845 flavoprotein disulfid 98.5 3.8E-06 8.2E-11 81.3 16.2 40 58-98 2-41 (466)
252 PRK09564 coenzyme A disulfide 98.5 1.8E-06 4E-11 83.1 13.1 55 272-329 191-245 (444)
253 PRK09754 phenylpropionate diox 98.5 2.7E-06 5.8E-11 80.6 13.5 50 278-330 192-241 (396)
254 PTZ00318 NADH dehydrogenase-li 98.4 3.7E-06 7.9E-11 80.4 13.8 52 272-329 228-279 (424)
255 PRK07846 mycothione reductase; 98.4 1.1E-06 2.5E-11 84.4 9.3 37 57-96 1-37 (451)
256 COG0029 NadB Aspartate oxidase 98.4 5.5E-06 1.2E-10 77.2 13.0 58 271-328 132-194 (518)
257 COG0445 GidA Flavin-dependent 98.4 2E-06 4.4E-11 80.8 9.6 36 56-91 3-38 (621)
258 PRK13512 coenzyme A disulfide 98.4 5.5E-06 1.2E-10 79.5 12.9 52 272-329 189-240 (438)
259 TIGR03315 Se_ygfK putative sel 98.3 7.8E-07 1.7E-11 91.6 6.3 43 56-98 536-578 (1012)
260 PRK14989 nitrite reductase sub 98.3 9.5E-06 2.1E-10 83.4 13.8 52 278-329 193-244 (847)
261 PLN02852 ferredoxin-NADP+ redu 98.3 1E-06 2.2E-11 84.6 6.4 45 54-98 23-69 (491)
262 COG3573 Predicted oxidoreducta 98.3 1.1E-05 2.4E-10 71.2 11.9 41 56-96 4-46 (552)
263 TIGR03452 mycothione_red mycot 98.3 3.3E-06 7.2E-11 81.3 9.5 39 57-98 2-40 (452)
264 PRK04965 NADH:flavorubredoxin 98.3 1.4E-05 3.1E-10 75.1 12.9 50 278-329 189-238 (377)
265 PRK09754 phenylpropionate diox 98.3 5.9E-06 1.3E-10 78.3 10.2 43 283-329 69-111 (396)
266 TIGR02374 nitri_red_nirB nitri 98.2 1.6E-05 3.5E-10 81.6 13.7 50 278-329 188-237 (785)
267 PRK07845 flavoprotein disulfid 98.2 1.7E-05 3.7E-10 76.8 12.5 50 278-329 224-273 (466)
268 PRK06292 dihydrolipoamide dehy 98.2 1.7E-06 3.7E-11 83.7 5.3 41 56-97 2-42 (460)
269 PRK09853 putative selenate red 98.2 2.2E-06 4.8E-11 88.0 6.3 44 55-98 537-580 (1019)
270 KOG4405 GDP dissociation inhib 98.2 4.5E-05 9.7E-10 69.1 13.4 121 201-326 217-341 (547)
271 PRK05976 dihydrolipoamide dehy 98.2 3.1E-05 6.7E-10 75.2 13.1 34 57-90 180-213 (472)
272 COG1148 HdrA Heterodisulfide r 98.2 2.4E-06 5.1E-11 79.0 4.9 44 55-98 122-165 (622)
273 TIGR03169 Nterm_to_SelD pyridi 98.1 5.1E-05 1.1E-09 71.1 13.9 51 273-329 192-242 (364)
274 COG4529 Uncharacterized protei 98.1 2.6E-05 5.7E-10 72.8 11.3 39 57-95 1-42 (474)
275 PTZ00188 adrenodoxin reductase 98.1 4.9E-06 1.1E-10 78.9 6.3 45 56-100 38-83 (506)
276 PRK06567 putative bifunctional 98.1 4.4E-06 9.6E-11 84.9 6.1 41 54-94 380-420 (1028)
277 PLN02785 Protein HOTHEAD 98.1 6.1E-05 1.3E-09 74.5 14.0 35 55-90 53-87 (587)
278 PRK14727 putative mercuric red 98.1 4.5E-06 9.8E-11 81.0 5.9 44 55-98 14-57 (479)
279 PRK05335 tRNA (uracil-5-)-meth 98.1 4.5E-06 9.7E-11 77.9 5.3 36 57-92 2-37 (436)
280 PRK14694 putative mercuric red 98.1 4.7E-06 1E-10 80.7 5.7 60 272-334 218-277 (468)
281 TIGR03385 CoA_CoA_reduc CoA-di 98.1 4.9E-05 1.1E-09 72.8 12.5 48 278-329 185-232 (427)
282 PRK13748 putative mercuric red 98.1 4E-06 8.7E-11 83.2 5.0 58 272-332 310-367 (561)
283 PRK07846 mycothione reductase; 98.1 5.9E-05 1.3E-09 72.6 12.8 49 285-335 219-267 (451)
284 TIGR02374 nitri_red_nirB nitri 98.1 1.1E-05 2.5E-10 82.7 8.1 44 282-329 64-107 (785)
285 PRK14989 nitrite reductase sub 98.1 1.8E-05 4E-10 81.4 9.5 45 282-330 69-113 (847)
286 PTZ00052 thioredoxin reductase 98.0 5.1E-06 1.1E-10 80.9 5.2 61 273-335 223-283 (499)
287 KOG1336 Monodehydroascorbate/f 98.0 6.1E-05 1.3E-09 70.0 11.7 60 277-336 260-319 (478)
288 TIGR01789 lycopene_cycl lycope 98.0 5.1E-06 1.1E-10 77.7 4.9 36 59-94 1-38 (370)
289 TIGR01424 gluta_reduc_2 glutat 98.0 5.8E-05 1.3E-09 72.7 12.0 50 278-329 213-262 (446)
290 PF13434 K_oxygenase: L-lysine 98.0 4.1E-05 8.9E-10 70.6 10.3 35 57-91 2-37 (341)
291 PRK14694 putative mercuric red 98.0 7.8E-05 1.7E-09 72.3 12.8 33 57-89 178-210 (468)
292 PTZ00367 squalene epoxidase; P 98.0 7E-06 1.5E-10 80.6 5.2 64 55-133 31-94 (567)
293 TIGR01423 trypano_reduc trypan 98.0 8E-06 1.7E-10 79.1 5.4 59 272-331 231-289 (486)
294 TIGR01423 trypano_reduc trypan 98.0 8.5E-05 1.8E-09 72.1 12.4 36 57-92 187-225 (486)
295 PRK14727 putative mercuric red 98.0 0.00011 2.3E-09 71.5 13.1 53 278-333 234-286 (479)
296 KOG1298 Squalene monooxygenase 98.0 9.1E-06 2E-10 73.1 4.6 37 54-90 42-78 (509)
297 KOG0399 Glutamate synthase [Am 98.0 8.6E-06 1.9E-10 82.0 4.9 46 53-98 1781-1826(2142)
298 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 9.6E-06 2.1E-10 76.2 4.9 36 58-93 1-36 (433)
299 PRK13748 putative mercuric red 97.9 0.00012 2.7E-09 72.7 13.1 33 57-89 270-302 (561)
300 COG0446 HcaD Uncharacterized N 97.9 9.2E-05 2E-09 70.4 11.5 38 57-94 136-173 (415)
301 TIGR03862 flavo_PP4765 unchara 97.9 0.00013 2.9E-09 67.6 12.0 56 271-330 85-141 (376)
302 PF07992 Pyr_redox_2: Pyridine 97.9 1.3E-05 2.8E-10 68.2 4.9 33 59-91 1-33 (201)
303 COG0493 GltD NADPH-dependent g 97.9 1.5E-05 3.3E-10 75.8 5.5 44 55-98 121-164 (457)
304 TIGR01317 GOGAT_sm_gam glutama 97.9 1.9E-05 4.1E-10 76.6 6.2 43 56-98 142-184 (485)
305 PRK04965 NADH:flavorubredoxin 97.9 0.00014 2.9E-09 68.6 11.7 43 282-329 68-110 (377)
306 PRK06327 dihydrolipoamide dehy 97.9 0.00015 3.2E-09 70.5 12.0 34 57-90 183-216 (475)
307 PTZ00153 lipoamide dehydrogena 97.9 0.00021 4.5E-09 71.5 12.9 35 57-91 312-346 (659)
308 PTZ00153 lipoamide dehydrogena 97.9 1.7E-05 3.7E-10 79.1 5.2 42 57-98 116-158 (659)
309 PRK12770 putative glutamate sy 97.8 3.2E-05 7E-10 72.1 6.4 42 56-97 17-58 (352)
310 PTZ00052 thioredoxin reductase 97.8 0.00023 5.1E-09 69.4 11.9 32 58-89 183-214 (499)
311 TIGR01438 TGR thioredoxin and 97.8 2.7E-05 5.8E-10 75.6 5.1 61 272-334 220-283 (484)
312 TIGR01438 TGR thioredoxin and 97.7 0.00028 6.1E-09 68.5 11.4 31 58-88 181-211 (484)
313 KOG4716 Thioredoxin reductase 97.7 1.8E-05 3.8E-10 70.1 2.7 60 269-329 235-299 (503)
314 COG3634 AhpF Alkyl hydroperoxi 97.7 7.6E-05 1.7E-09 66.4 6.6 64 273-337 267-332 (520)
315 TIGR03452 mycothione_red mycot 97.7 0.00029 6.2E-09 68.0 11.2 49 285-335 222-270 (452)
316 PRK13984 putative oxidoreducta 97.7 5.5E-05 1.2E-09 75.7 6.5 43 55-97 281-323 (604)
317 PRK06467 dihydrolipoamide dehy 97.7 0.00038 8.2E-09 67.5 12.0 35 57-91 174-208 (471)
318 PRK05675 sdhA succinate dehydr 97.7 0.0005 1.1E-08 68.2 12.4 59 272-330 126-189 (570)
319 PRK08255 salicylyl-CoA 5-hydro 97.6 6E-05 1.3E-09 77.3 5.1 34 58-91 1-36 (765)
320 KOG2311 NAD/FAD-utilizing prot 97.6 0.00065 1.4E-08 63.1 11.1 35 55-89 26-60 (679)
321 KOG2960 Protein involved in th 97.6 2.1E-05 4.6E-10 65.0 1.2 65 56-131 75-143 (328)
322 PRK06292 dihydrolipoamide dehy 97.5 0.0012 2.7E-08 63.8 12.6 34 57-90 169-202 (460)
323 PF07156 Prenylcys_lyase: Pren 97.4 0.00034 7.5E-09 64.8 7.0 116 203-329 66-186 (368)
324 COG2303 BetA Choline dehydroge 97.4 0.00016 3.4E-09 71.1 4.6 36 55-90 5-40 (542)
325 KOG1800 Ferredoxin/adrenodoxin 97.4 0.00038 8.3E-09 62.9 5.9 45 56-100 19-65 (468)
326 KOG0404 Thioredoxin reductase 97.2 0.0023 5.1E-08 53.7 8.8 61 273-338 71-132 (322)
327 COG1206 Gid NAD(FAD)-utilizing 97.1 0.00047 1E-08 61.1 4.0 37 57-93 3-39 (439)
328 COG1249 Lpd Pyruvate/2-oxoglut 97.1 0.00096 2.1E-08 63.6 6.0 39 56-94 172-210 (454)
329 COG1251 NirB NAD(P)H-nitrite r 96.9 0.0031 6.8E-08 62.0 7.9 50 278-329 193-242 (793)
330 PF13434 K_oxygenase: L-lysine 96.9 0.0086 1.9E-07 55.4 10.4 35 55-89 188-224 (341)
331 COG3486 IucD Lysine/ornithine 96.8 0.017 3.6E-07 53.2 11.1 37 55-91 3-40 (436)
332 PRK06370 mercuric reductase; V 96.7 0.0032 7E-08 61.0 6.6 38 57-94 171-208 (463)
333 TIGR02053 MerA mercuric reduct 96.6 0.004 8.6E-08 60.4 6.3 37 57-93 166-202 (463)
334 PF01210 NAD_Gly3P_dh_N: NAD-d 96.5 0.003 6.6E-08 51.4 4.0 32 59-90 1-32 (157)
335 PRK07251 pyridine nucleotide-d 96.5 0.0064 1.4E-07 58.5 6.4 37 57-93 157-193 (438)
336 KOG1238 Glucose dehydrogenase/ 96.4 0.0032 6.9E-08 61.2 4.2 39 54-92 54-93 (623)
337 PF03721 UDPG_MGDP_dh_N: UDP-g 96.4 0.0039 8.5E-08 52.2 4.0 34 58-91 1-34 (185)
338 PRK05249 soluble pyridine nucl 96.4 0.0068 1.5E-07 58.7 6.1 37 57-93 175-211 (461)
339 PRK09564 coenzyme A disulfide 96.3 0.007 1.5E-07 58.3 6.1 36 57-92 149-184 (444)
340 PF02737 3HCDH_N: 3-hydroxyacy 96.3 0.0055 1.2E-07 51.1 4.5 33 59-91 1-33 (180)
341 TIGR01316 gltA glutamate synth 96.3 0.011 2.4E-07 56.9 7.1 35 56-90 271-305 (449)
342 PRK01438 murD UDP-N-acetylmura 96.3 0.0059 1.3E-07 59.5 5.2 34 57-90 16-49 (480)
343 PRK06912 acoL dihydrolipoamide 96.2 0.0091 2E-07 57.8 6.0 37 57-93 170-206 (458)
344 PRK12831 putative oxidoreducta 96.1 0.015 3.2E-07 56.4 6.9 35 56-90 280-314 (464)
345 PRK02705 murD UDP-N-acetylmura 96.0 0.0077 1.7E-07 58.3 4.6 33 59-91 2-34 (459)
346 KOG3855 Monooxygenase involved 96.0 0.0076 1.7E-07 55.3 4.1 37 55-91 34-74 (481)
347 COG0569 TrkA K+ transport syst 96.0 0.011 2.3E-07 51.2 4.6 66 58-132 1-66 (225)
348 PF02558 ApbA: Ketopantoate re 95.9 0.011 2.3E-07 47.8 4.3 31 60-90 1-31 (151)
349 TIGR01421 gluta_reduc_1 glutat 95.9 0.013 2.7E-07 56.7 5.3 37 57-93 166-202 (450)
350 PRK06115 dihydrolipoamide dehy 95.8 0.014 2.9E-07 56.7 5.3 37 57-93 174-210 (466)
351 TIGR01350 lipoamide_DH dihydro 95.8 0.014 3E-07 56.6 5.3 37 57-93 170-206 (461)
352 PRK06129 3-hydroxyacyl-CoA deh 95.8 0.012 2.7E-07 53.6 4.5 33 58-90 3-35 (308)
353 KOG2495 NADH-dehydrogenase (ub 95.8 0.41 8.9E-06 44.6 14.0 39 53-91 51-89 (491)
354 PRK13512 coenzyme A disulfide 95.7 0.015 3.2E-07 55.9 5.0 37 57-93 148-184 (438)
355 PRK06416 dihydrolipoamide dehy 95.7 0.017 3.6E-07 56.1 5.2 37 57-93 172-208 (462)
356 PRK07818 dihydrolipoamide dehy 95.6 0.018 4E-07 55.8 5.2 36 57-92 172-207 (466)
357 KOG3923 D-aspartate oxidase [A 95.6 0.013 2.7E-07 51.6 3.5 52 272-338 151-202 (342)
358 PRK12778 putative bifunctional 95.5 0.034 7.4E-07 57.3 7.0 35 56-90 569-604 (752)
359 COG1004 Ugd Predicted UDP-gluc 95.5 0.018 3.9E-07 52.9 4.3 33 58-90 1-33 (414)
360 PF01262 AlaDh_PNT_C: Alanine 95.5 0.027 5.8E-07 46.4 5.0 35 56-90 19-53 (168)
361 PRK08010 pyridine nucleotide-d 95.5 0.031 6.7E-07 53.9 6.2 36 58-93 159-194 (441)
362 PRK12770 putative glutamate sy 95.4 0.046 1E-06 50.9 7.0 34 57-90 172-206 (352)
363 PF13738 Pyr_redox_3: Pyridine 95.4 0.022 4.7E-07 48.3 4.4 35 56-90 166-200 (203)
364 PRK14106 murD UDP-N-acetylmura 95.3 0.025 5.5E-07 54.6 5.1 34 57-90 5-38 (450)
365 PRK07066 3-hydroxybutyryl-CoA 95.3 0.034 7.4E-07 50.7 5.5 34 57-90 7-40 (321)
366 PTZ00058 glutathione reductase 95.3 0.026 5.7E-07 55.7 5.1 37 57-93 237-273 (561)
367 PRK08293 3-hydroxybutyryl-CoA 95.2 0.026 5.7E-07 50.9 4.7 33 58-90 4-36 (287)
368 PRK06249 2-dehydropantoate 2-r 95.2 0.033 7E-07 51.0 5.3 35 56-90 4-38 (313)
369 PRK09260 3-hydroxybutyryl-CoA 95.2 0.026 5.6E-07 51.0 4.6 34 58-91 2-35 (288)
370 TIGR03140 AhpF alkyl hydropero 95.1 0.03 6.4E-07 55.1 5.1 35 56-90 351-385 (515)
371 TIGR01816 sdhA_forward succina 95.1 0.056 1.2E-06 53.8 7.0 57 272-329 119-180 (565)
372 PRK07819 3-hydroxybutyryl-CoA 95.1 0.029 6.3E-07 50.6 4.5 34 58-91 6-39 (286)
373 PLN02507 glutathione reductase 95.0 0.036 7.8E-07 54.2 5.1 36 57-92 203-238 (499)
374 COG1252 Ndh NADH dehydrogenase 95.0 0.019 4.1E-07 53.7 2.9 60 57-133 155-227 (405)
375 PF01488 Shikimate_DH: Shikima 95.0 0.061 1.3E-06 42.5 5.5 34 56-89 11-45 (135)
376 PRK07530 3-hydroxybutyryl-CoA 94.8 0.04 8.6E-07 49.9 4.7 33 58-90 5-37 (292)
377 PRK05708 2-dehydropantoate 2-r 94.8 0.044 9.6E-07 49.9 4.9 34 57-90 2-35 (305)
378 PRK04148 hypothetical protein; 94.8 0.04 8.7E-07 43.0 3.8 34 57-91 17-50 (134)
379 PRK06116 glutathione reductase 94.7 0.048 1E-06 52.7 5.2 36 57-92 167-202 (450)
380 PRK06522 2-dehydropantoate 2-r 94.7 0.045 9.8E-07 49.7 4.8 31 59-89 2-32 (304)
381 TIGR01470 cysG_Nterm siroheme 94.7 0.056 1.2E-06 46.0 5.0 34 57-90 9-42 (205)
382 PRK06035 3-hydroxyacyl-CoA deh 94.7 0.044 9.5E-07 49.6 4.6 34 58-91 4-37 (291)
383 PRK06718 precorrin-2 dehydroge 94.6 0.062 1.3E-06 45.7 5.0 34 56-89 9-42 (202)
384 PRK10262 thioredoxin reductase 94.6 0.053 1.2E-06 49.8 5.1 35 56-90 145-179 (321)
385 PRK12921 2-dehydropantoate 2-r 94.6 0.048 1.1E-06 49.6 4.7 31 58-88 1-31 (305)
386 TIGR03143 AhpF_homolog putativ 94.6 0.048 1E-06 54.1 5.0 36 56-91 142-177 (555)
387 PRK06719 precorrin-2 dehydroge 94.6 0.066 1.4E-06 43.5 5.0 32 56-87 12-43 (157)
388 PF13241 NAD_binding_7: Putati 94.6 0.036 7.7E-07 41.5 3.2 34 56-89 6-39 (103)
389 PLN02546 glutathione reductase 94.5 0.054 1.2E-06 53.6 5.1 37 57-93 252-288 (558)
390 COG0686 Ald Alanine dehydrogen 94.5 0.037 8E-07 49.1 3.4 35 55-89 166-200 (371)
391 cd05292 LDH_2 A subgroup of L- 94.5 0.06 1.3E-06 49.1 4.9 33 58-90 1-35 (308)
392 PRK12779 putative bifunctional 94.5 0.095 2.1E-06 55.1 6.9 35 56-90 446-480 (944)
393 PRK05808 3-hydroxybutyryl-CoA 94.4 0.056 1.2E-06 48.7 4.6 33 58-90 4-36 (282)
394 cd01080 NAD_bind_m-THF_DH_Cycl 94.4 0.077 1.7E-06 43.5 5.0 34 56-89 43-77 (168)
395 PRK15317 alkyl hydroperoxide r 94.4 0.061 1.3E-06 52.9 5.1 36 56-91 350-385 (517)
396 PTZ00318 NADH dehydrogenase-li 94.4 0.053 1.2E-06 51.9 4.5 36 58-93 174-223 (424)
397 PRK08229 2-dehydropantoate 2-r 94.3 0.057 1.2E-06 50.0 4.5 33 58-90 3-35 (341)
398 PRK11749 dihydropyrimidine deh 94.3 0.12 2.7E-06 50.0 7.0 35 56-90 272-307 (457)
399 TIGR03026 NDP-sugDHase nucleot 94.2 0.059 1.3E-06 51.4 4.5 33 59-91 2-34 (411)
400 KOG2755 Oxidoreductase [Genera 94.2 0.034 7.4E-07 48.1 2.4 35 59-93 1-37 (334)
401 TIGR00518 alaDH alanine dehydr 94.2 0.074 1.6E-06 49.8 4.9 35 56-90 166-200 (370)
402 PRK11064 wecC UDP-N-acetyl-D-m 94.2 0.063 1.4E-06 51.1 4.5 34 58-91 4-37 (415)
403 TIGR01292 TRX_reduct thioredox 94.2 0.079 1.7E-06 47.9 5.0 35 56-90 140-174 (300)
404 TIGR01763 MalateDH_bact malate 94.1 0.085 1.8E-06 48.0 5.1 33 58-90 2-35 (305)
405 PRK14619 NAD(P)H-dependent gly 94.1 0.093 2E-06 47.9 5.3 35 56-90 3-37 (308)
406 PRK09424 pntA NAD(P) transhydr 93.9 0.087 1.9E-06 51.1 4.9 35 56-90 164-198 (509)
407 PRK06130 3-hydroxybutyryl-CoA 93.8 0.09 1.9E-06 48.1 4.7 33 58-90 5-37 (311)
408 PRK14618 NAD(P)H-dependent gly 93.8 0.1 2.2E-06 48.1 5.1 34 57-90 4-37 (328)
409 PF02254 TrkA_N: TrkA-N domain 93.7 0.11 2.4E-06 39.6 4.5 32 60-91 1-32 (116)
410 TIGR02354 thiF_fam2 thiamine b 93.7 0.11 2.4E-06 44.0 4.7 36 56-91 20-56 (200)
411 PLN02545 3-hydroxybutyryl-CoA 93.6 0.11 2.5E-06 47.0 5.1 33 58-90 5-37 (295)
412 PRK14620 NAD(P)H-dependent gly 93.6 0.096 2.1E-06 48.2 4.6 32 59-90 2-33 (326)
413 COG0771 MurD UDP-N-acetylmuram 93.6 0.099 2.2E-06 49.7 4.7 36 57-92 7-42 (448)
414 PRK12810 gltD glutamate syntha 93.5 0.22 4.7E-06 48.5 7.0 35 56-90 280-315 (471)
415 PRK07417 arogenate dehydrogena 93.5 0.1 2.2E-06 46.9 4.3 32 59-90 2-33 (279)
416 PRK00094 gpsA NAD(P)H-dependen 93.4 0.12 2.5E-06 47.6 4.7 33 58-90 2-34 (325)
417 COG1251 NirB NAD(P)H-nitrite r 93.3 0.12 2.7E-06 51.2 4.9 53 282-338 69-121 (793)
418 cd00401 AdoHcyase S-adenosyl-L 93.3 0.14 3.1E-06 48.3 5.1 35 56-90 201-235 (413)
419 TIGR01317 GOGAT_sm_gam glutama 93.2 0.28 6.1E-06 47.8 7.3 36 56-91 282-318 (485)
420 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.2 0.14 3.1E-06 49.9 5.1 34 57-90 5-38 (503)
421 COG1748 LYS9 Saccharopine dehy 93.2 0.13 2.9E-06 47.9 4.7 32 58-89 2-34 (389)
422 KOG1335 Dihydrolipoamide dehyd 93.2 0.057 1.2E-06 49.3 2.2 41 56-96 210-250 (506)
423 PLN02353 probable UDP-glucose 93.2 0.13 2.8E-06 49.7 4.8 33 58-90 2-36 (473)
424 PRK01710 murD UDP-N-acetylmura 93.2 0.13 2.8E-06 49.9 4.8 34 57-90 14-47 (458)
425 PF03446 NAD_binding_2: NAD bi 93.1 0.16 3.4E-06 41.6 4.6 33 58-90 2-34 (163)
426 PF00899 ThiF: ThiF family; I 93.1 0.17 3.7E-06 39.8 4.7 37 57-93 2-39 (135)
427 PRK04308 murD UDP-N-acetylmura 93.1 0.15 3.3E-06 49.2 5.2 35 57-91 5-39 (445)
428 cd01075 NAD_bind_Leu_Phe_Val_D 93.1 0.18 3.9E-06 42.8 5.0 35 56-90 27-61 (200)
429 PRK15057 UDP-glucose 6-dehydro 93.0 0.13 2.8E-06 48.4 4.5 31 59-90 2-32 (388)
430 PRK04690 murD UDP-N-acetylmura 93.0 0.14 3E-06 49.7 4.8 34 57-90 8-41 (468)
431 PRK02472 murD UDP-N-acetylmura 93.0 0.14 3.1E-06 49.4 4.9 34 57-90 5-38 (447)
432 PRK15116 sulfur acceptor prote 93.0 0.17 3.7E-06 44.8 4.9 43 56-98 29-72 (268)
433 PRK07531 bifunctional 3-hydrox 93.0 0.13 2.9E-06 50.1 4.7 33 58-90 5-37 (495)
434 PRK03369 murD UDP-N-acetylmura 92.8 0.15 3.3E-06 49.7 4.8 33 57-89 12-44 (488)
435 TIGR03169 Nterm_to_SelD pyridi 92.8 0.12 2.7E-06 48.2 4.1 48 278-330 60-107 (364)
436 PF00056 Ldh_1_N: lactate/mala 92.8 0.25 5.4E-06 39.3 5.2 33 58-90 1-36 (141)
437 PF13478 XdhC_C: XdhC Rossmann 92.7 0.15 3.3E-06 40.2 3.8 31 60-90 1-31 (136)
438 COG3634 AhpF Alkyl hydroperoxi 92.7 0.15 3.3E-06 46.1 4.1 39 52-90 349-387 (520)
439 TIGR01915 npdG NADPH-dependent 92.7 0.19 4.1E-06 43.3 4.8 33 58-90 1-34 (219)
440 PRK00421 murC UDP-N-acetylmura 92.7 0.16 3.6E-06 49.2 4.8 36 56-91 6-42 (461)
441 PRK12549 shikimate 5-dehydroge 92.6 0.2 4.3E-06 45.1 4.9 35 56-90 126-161 (284)
442 cd05191 NAD_bind_amino_acid_DH 92.6 0.29 6.4E-06 35.1 4.9 33 56-88 22-55 (86)
443 cd05311 NAD_bind_2_malic_enz N 92.6 0.21 4.6E-06 43.2 4.9 35 56-90 24-61 (226)
444 cd05291 HicDH_like L-2-hydroxy 92.5 0.2 4.4E-06 45.6 4.9 32 59-90 2-35 (306)
445 PRK08306 dipicolinate synthase 92.5 0.22 4.7E-06 45.1 5.0 35 56-90 151-185 (296)
446 TIGR00561 pntA NAD(P) transhyd 92.5 0.2 4.3E-06 48.6 4.9 35 56-90 163-197 (511)
447 PLN02172 flavin-containing mon 92.4 0.28 6.2E-06 47.4 6.0 35 56-90 203-237 (461)
448 cd05293 LDH_1 A subgroup of L- 92.4 0.24 5.3E-06 45.1 5.3 34 57-90 3-38 (312)
449 PRK08268 3-hydroxy-acyl-CoA de 92.4 0.23 4.9E-06 48.6 5.4 35 57-91 7-41 (507)
450 KOG2304 3-hydroxyacyl-CoA dehy 92.4 0.16 3.6E-06 42.9 3.7 37 55-91 9-45 (298)
451 TIGR02853 spore_dpaA dipicolin 92.2 0.24 5.2E-06 44.6 4.9 35 56-90 150-184 (287)
452 PRK11730 fadB multifunctional 92.2 0.18 3.8E-06 51.6 4.5 34 58-91 314-347 (715)
453 PRK06223 malate dehydrogenase; 92.1 0.25 5.4E-06 45.1 4.9 33 58-90 3-36 (307)
454 KOG1346 Programmed cell death 92.0 0.13 2.8E-06 47.6 2.9 64 271-336 392-455 (659)
455 PTZ00082 L-lactate dehydrogena 92.0 0.29 6.2E-06 44.9 5.2 35 57-91 6-41 (321)
456 TIGR02437 FadB fatty oxidation 91.9 0.2 4.3E-06 51.2 4.5 34 57-90 313-346 (714)
457 TIGR01372 soxA sarcosine oxida 91.9 0.4 8.8E-06 51.1 7.0 35 57-91 317-352 (985)
458 KOG2495 NADH-dehydrogenase (ub 91.9 0.081 1.8E-06 49.1 1.5 34 58-91 219-266 (491)
459 cd01078 NAD_bind_H4MPT_DH NADP 91.8 0.32 6.8E-06 41.0 5.0 34 56-89 27-61 (194)
460 PRK07688 thiamine/molybdopteri 91.8 0.28 6E-06 45.3 4.9 36 56-91 23-59 (339)
461 TIGR00936 ahcY adenosylhomocys 91.7 0.29 6.3E-06 46.1 5.0 35 56-90 194-228 (406)
462 PF00670 AdoHcyase_NAD: S-aden 91.7 0.3 6.5E-06 39.5 4.4 36 56-91 22-57 (162)
463 PRK12475 thiamine/molybdopteri 91.6 0.29 6.3E-06 45.2 4.8 36 56-91 23-59 (338)
464 COG1893 ApbA Ketopantoate redu 91.6 0.24 5.3E-06 45.0 4.2 34 58-91 1-34 (307)
465 PRK00141 murD UDP-N-acetylmura 91.5 0.3 6.4E-06 47.5 5.1 33 57-89 15-47 (473)
466 COG1250 FadB 3-hydroxyacyl-CoA 91.5 0.26 5.6E-06 44.5 4.2 34 57-90 3-36 (307)
467 TIGR02964 xanthine_xdhC xanthi 91.5 0.36 7.8E-06 42.4 5.0 37 55-91 98-134 (246)
468 TIGR01505 tartro_sem_red 2-hyd 91.4 0.22 4.8E-06 45.0 3.9 32 59-90 1-32 (291)
469 PRK09496 trkA potassium transp 91.3 0.29 6.2E-06 47.3 4.7 34 58-91 1-34 (453)
470 PTZ00117 malate dehydrogenase; 91.2 0.38 8.2E-06 44.1 5.2 35 56-90 4-39 (319)
471 cd01065 NAD_bind_Shikimate_DH 91.2 0.4 8.7E-06 38.6 4.8 35 56-90 18-53 (155)
472 PRK03803 murD UDP-N-acetylmura 91.2 0.27 5.8E-06 47.5 4.4 35 56-90 5-39 (448)
473 TIGR00507 aroE shikimate 5-deh 91.2 0.38 8.2E-06 43.0 5.0 34 56-89 116-149 (270)
474 PRK00683 murD UDP-N-acetylmura 91.1 0.32 6.9E-06 46.5 4.8 33 58-90 4-36 (418)
475 TIGR02356 adenyl_thiF thiazole 91.1 0.37 8.1E-06 40.9 4.7 36 56-91 20-56 (202)
476 TIGR02441 fa_ox_alpha_mit fatt 91.1 0.26 5.7E-06 50.5 4.4 35 57-91 335-369 (737)
477 PRK01368 murD UDP-N-acetylmura 91.1 0.27 5.9E-06 47.4 4.3 32 57-89 6-37 (454)
478 PRK02006 murD UDP-N-acetylmura 91.1 0.31 6.7E-06 47.8 4.8 34 57-90 7-40 (498)
479 PRK11199 tyrA bifunctional cho 91.1 0.36 7.7E-06 45.3 5.0 35 56-90 97-132 (374)
480 cd01487 E1_ThiF_like E1_ThiF_l 91.0 0.38 8.3E-06 39.8 4.6 33 59-91 1-34 (174)
481 PLN02695 GDP-D-mannose-3',5'-e 91.0 0.51 1.1E-05 44.3 6.0 35 55-89 19-54 (370)
482 PRK12548 shikimate 5-dehydroge 91.0 0.43 9.3E-06 43.1 5.2 35 56-90 125-160 (289)
483 PRK00066 ldh L-lactate dehydro 91.0 0.43 9.3E-06 43.6 5.3 34 57-90 6-41 (315)
484 cd01339 LDH-like_MDH L-lactate 90.8 0.3 6.6E-06 44.3 4.1 31 60-90 1-32 (300)
485 PRK05476 S-adenosyl-L-homocyst 90.8 0.4 8.7E-06 45.5 5.0 36 56-91 211-246 (425)
486 PF10727 Rossmann-like: Rossma 90.8 0.19 4.2E-06 39.0 2.4 36 55-90 8-43 (127)
487 COG2072 TrkA Predicted flavopr 90.8 0.78 1.7E-05 44.2 7.1 37 55-91 173-209 (443)
488 cd01483 E1_enzyme_family Super 90.7 0.43 9.3E-06 38.0 4.5 36 59-94 1-37 (143)
489 PRK15461 NADH-dependent gamma- 90.7 0.36 7.7E-06 43.8 4.4 32 59-90 3-34 (296)
490 PRK12814 putative NADPH-depend 90.6 0.43 9.3E-06 48.4 5.4 35 56-90 322-357 (652)
491 KOG3851 Sulfide:quinone oxidor 90.6 0.3 6.5E-06 43.7 3.7 38 54-91 36-75 (446)
492 TIGR02355 moeB molybdopterin s 90.5 0.51 1.1E-05 41.3 5.1 42 56-97 23-65 (240)
493 cd05290 LDH_3 A subgroup of L- 90.5 0.4 8.8E-06 43.6 4.6 32 59-90 1-34 (307)
494 PRK08644 thiamine biosynthesis 90.3 0.5 1.1E-05 40.4 4.8 36 56-91 27-63 (212)
495 PRK00258 aroE shikimate 5-dehy 90.3 0.51 1.1E-05 42.3 5.1 35 56-90 122-157 (278)
496 PRK11154 fadJ multifunctional 90.3 0.35 7.5E-06 49.5 4.4 34 57-90 309-343 (708)
497 TIGR02440 FadJ fatty oxidation 90.3 0.37 8E-06 49.2 4.6 33 58-90 305-338 (699)
498 PF03807 F420_oxidored: NADP o 90.2 0.57 1.2E-05 34.2 4.5 32 59-90 1-36 (96)
499 PF07992 Pyr_redox_2: Pyridine 90.2 0.49 1.1E-05 39.8 4.7 53 277-329 63-121 (201)
500 PTZ00142 6-phosphogluconate de 90.1 0.37 7.9E-06 46.6 4.2 34 58-91 2-35 (470)
No 1
>PLN02612 phytoene desaturase
Probab=100.00 E-value=4.6e-40 Score=321.01 Aligned_cols=364 Identities=88% Similarity=1.446 Sum_probs=298.6
Q ss_pred CCCCceeeccCCCCCCCCcccchhhhhhhccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCce
Q 016871 16 GFCPSKVVCVDYPRPDIDNTSNFLEAAYLSSSFRTSPRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (381)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~ 95 (381)
+.++..+.|+++|.|.++.+.+|-.+..........+......+|+|||||++||+||++|++.|++|+|+|+++.+||+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 52 GRGPLQVVCVDYPRPELENTVNFLEAAALSASFRSAPRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCceEEecCCCCCchhhHHHHHhhhhhccccccCCCCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCc
Confidence 55678899999999999999999876654444444445556789999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcccceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcC
Q 016871 96 IAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNN 175 (381)
Q Consensus 96 ~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (381)
+.++...+|+.+|.|.|++.+.++++.++++++|++....+....+.+..+...+.+..+.+....|..++.+..++...
T Consensus 132 ~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~ 211 (567)
T PLN02612 132 VAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNN 211 (567)
T ss_pred ceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcC
Confidence 99887557899999999999999999999999999887777777777666555555555566555666666777777766
Q ss_pred CCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhh
Q 016871 176 EMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL 255 (381)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (381)
..+++.++++....+.+......+.....+..|+.+|+++.+.++.+.++++.++....++.+++++++...+..+..++
T Consensus 212 ~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l 291 (567)
T PLN02612 212 EMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFL 291 (567)
T ss_pred ccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHH
Confidence 67778888776655443333333344556789999999999999888999999998888888999999998888777776
Q ss_pred cccCCCceEEecCCcCccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccC
Q 016871 256 QEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (381)
Q Consensus 256 ~~~~g~~~~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll 335 (381)
...++....+..|+.++.+++.|.+.+++.|++|++|++|++|..++++++++|.+.+|+++.||+||+|+|++.+..|+
T Consensus 292 ~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll 371 (567)
T PLN02612 292 QEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLL 371 (567)
T ss_pred hccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhC
Confidence 66677777788877568899999999999999999999999999866776777888889889999999999999999899
Q ss_pred CCcccchHHHHHhccCCCCCEEEEEEEEecCCCCCCCceeeccC
Q 016871 336 PENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRS 379 (381)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~ 379 (381)
++.+.+..+.+.++++.+.++++++++|++|+|....+.+|..+
T Consensus 372 ~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~~~~~~~~~ 415 (567)
T PLN02612 372 PDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRS 415 (567)
T ss_pred cchhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCCCceeecCC
Confidence 87655556777788888999999999999999876677767654
No 2
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=1e-33 Score=272.07 Aligned_cols=319 Identities=74% Similarity=1.267 Sum_probs=245.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcccceee
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 138 (381)
+|+|||||++||+||+.|+++|++|+|+|+++++||++.+....+|+.+|.|.|++...++++.++++++|+.....+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 80 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS 80 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC
Confidence 58999999999999999999999999999999999999887655789999999999999999999999999987665555
Q ss_pred cceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHHHHcCC
Q 016871 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGV 218 (381)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 218 (381)
....+......+....+.+.. ++...+.+..++......++.++++....+.+......+.....+.+|+.+|+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 159 (453)
T TIGR02731 81 HSMIFNQPDKPGTFSRFDFPD-IPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRKQGV 159 (453)
T ss_pred CceEEecCCCCcceeeccCCC-CCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHHcCC
Confidence 555554433333333333332 4444555555555444566777776665443322222233345678999999999989
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcCccchHHHHHHHHhcCCEEEecceeeEE
Q 016871 219 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKI 298 (381)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I 298 (381)
++.+.+.++.++....+..+++++++.+.+..+..++....+....+..++.+..+++.|.+.++++|++|++|++|++|
T Consensus 160 ~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I 239 (453)
T TIGR02731 160 PERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEI 239 (453)
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEE
Confidence 98889999999998988889999999888877776665555555556666556789999999999999999999999999
Q ss_pred EEcCCCCEEEEEEeCCe-----EEEecEEEEccCHHHHhccCCCcccchHHHHHhccCCCCCEEEEEEEEecCCCCCCCc
Q 016871 299 ELNDDGTVKNFLLTNGN-----VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDH 373 (381)
Q Consensus 299 ~~~~~~~~~~V~t~~G~-----~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~ 373 (381)
..++++.+++|++.+|+ ++.||.||+|+|+..+..|||.......+.+.+.++.+.+.++++++|+++++. ..+
T Consensus 240 ~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~-~~~ 318 (453)
T TIGR02731 240 VLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTT-VDH 318 (453)
T ss_pred EECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCC-CCc
Confidence 87667767788887765 789999999999999999997643334566777788888999999999999873 334
Q ss_pred eeeccC
Q 016871 374 LLFSRS 379 (381)
Q Consensus 374 ~~~~~~ 379 (381)
.+|..+
T Consensus 319 ~~~~~~ 324 (453)
T TIGR02731 319 LLFSRS 324 (453)
T ss_pred eeeeCC
Confidence 444433
No 3
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=6.4e-30 Score=245.32 Aligned_cols=308 Identities=35% Similarity=0.642 Sum_probs=230.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcccceee
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 138 (381)
+|+|||||++||++|+.|++.|++|+|+|+++.+||+++++....|+.+|.|.|++.+.++++.++++++|+...+.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 80 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE 80 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc
Confidence 58999999999999999999999999999999999999997656789999999999999999999999999987665443
Q ss_pred cceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhh--hhhh---cCc---chhhccccccHH
Q 016871 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLL--PAII---GGQ---AYVEAQDGLTVQ 210 (381)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~---~~~~~~~~~s~~ 210 (381)
....+.. ..+....+.+....+..+..+..++. ...+++.++++...... +... ... ..+...+.+|+.
T Consensus 81 ~~~~~~~--~~~~~~~~~~~~~~~~P~~~~~~~l~-~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 157 (474)
T TIGR02732 81 HTHTFVN--KGGDIGELDFRFATGAPFNGLKAFFT-TSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFA 157 (474)
T ss_pred ceeEEEc--CCCcccccccCCCCCCchhhhHHHhc-CCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHH
Confidence 3332321 11222222222223344445555554 45677778776554431 1110 001 122345679999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcCccchHHHHHHHHhcCCEEE
Q 016871 211 EWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVR 290 (381)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~l~~~G~~i~ 290 (381)
+|+++.+.++...+.++++++.+..+.+++++++......+..+.....+....+..++....+.+.+.+.+++.|++|+
T Consensus 158 ~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~ 237 (474)
T TIGR02732 158 EWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFH 237 (474)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEE
Confidence 99999988877899999999999999999999998887765555444556666777666344477779999999999999
Q ss_pred ecceeeEEEEcC--CC--CEEEEEEeCC---eEEEecEEEEccCHHHHhccCCCcccchHHHHHhccCCCCCEEEEEEEE
Q 016871 291 LNSRVQKIELND--DG--TVKNFLLTNG---NVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWF 363 (381)
Q Consensus 291 ~~t~V~~I~~~~--~~--~~~~V~t~~G---~~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~ 363 (381)
++++|++|..++ ++ .+++|++.+| +++.||+||+|+|++.+..|+++.+........+..+.+.|..+|+++|
T Consensus 238 ~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~ 317 (474)
T TIGR02732 238 LRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRY 317 (474)
T ss_pred CCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEe
Confidence 999999999753 23 2566777554 4689999999999999999999854334456778889999999999999
Q ss_pred ecCCCC
Q 016871 364 DRKLKN 369 (381)
Q Consensus 364 ~~~~~~ 369 (381)
++++..
T Consensus 318 ~~~v~~ 323 (474)
T TIGR02732 318 DGWVTE 323 (474)
T ss_pred cccccc
Confidence 987743
No 4
>PLN02487 zeta-carotene desaturase
Probab=99.97 E-value=4.6e-29 Score=241.06 Aligned_cols=309 Identities=34% Similarity=0.609 Sum_probs=230.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcccce
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQW 136 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~~~ 136 (381)
..+|+|||||++||++|+.|.+.|++|+|+|+++.+||.+.++....|+.+|+|.|++.+.++++.++++++|++..+.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~~ 154 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLLV 154 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccccc
Confidence 46999999999999999999999999999999999999999886567899999999999999999999999999876554
Q ss_pred eecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhh--hhhhhc------Ccchhhcccccc
Q 016871 137 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGL--LPAIIG------GQAYVEAQDGLT 208 (381)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~s 208 (381)
......+. ...+....+.+.-.++..+..+..++.. ..+.+.++++..... .+.... ........+..+
T Consensus 155 ~~~~~~~~--~~~g~~~~~~~~~p~~~pl~~~~~~l~~-~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~s 231 (569)
T PLN02487 155 KDHTHTFV--NKGGDVGELDFRFPVGAPLHGIKAFLTT-NQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDIS 231 (569)
T ss_pred cccceeEE--ecCCEEeeeccCCCCCchhhhHHHHHcC-CCCCHHHHHhhcccccccchhhhccCccccccccccccCCc
Confidence 33222221 1112221111111133344444555543 456666766654332 111000 012233456799
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcCc-cchHHHHHHHHhcCC
Q 016871 209 VQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPE-RLCLPIVEHIQSLGG 287 (381)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~l~~~l~~~l~~~G~ 287 (381)
+.+|+++++.+++..+.++++++.+..+.+++++++......+..+.....+....|+.++ +. .|++.+++.++++|+
T Consensus 232 v~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg-~~~~l~~pl~~~L~~~Gg 310 (569)
T PLN02487 232 FSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGS-PDVRLSGPIAKYITDRGG 310 (569)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCC-chHHHHHHHHHHHHHcCC
Confidence 9999999988777899999999999999999999999888777543323334456677776 55 699999999999999
Q ss_pred EEEecceeeEEEEcC--CC--CEEEEEE---eCCeEEEecEEEEccCHHHHhccCCCcccchHHHHHhccCCCCCEEEEE
Q 016871 288 EVRLNSRVQKIELND--DG--TVKNFLL---TNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIH 360 (381)
Q Consensus 288 ~i~~~t~V~~I~~~~--~~--~~~~V~t---~~G~~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~ 360 (381)
+|+++++|++|..+. ++ ++++|++ .+++++.+|.||+|++.+.+.+|+|+.+........+..+.+.|.++|+
T Consensus 311 ~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~ 390 (569)
T PLN02487 311 RFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQ 390 (569)
T ss_pred EEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEE
Confidence 999999999999853 33 3677887 3344689999999999999999999875444556788899899999999
Q ss_pred EEEecCCCC
Q 016871 361 IWFDRKLKN 369 (381)
Q Consensus 361 l~~~~~~~~ 369 (381)
|+||+++..
T Consensus 391 L~~d~~v~~ 399 (569)
T PLN02487 391 LRYNGWVTE 399 (569)
T ss_pred EEecccccc
Confidence 999998753
No 5
>PRK07233 hypothetical protein; Provisional
Probab=99.96 E-value=3.8e-27 Score=225.92 Aligned_cols=287 Identities=26% Similarity=0.386 Sum_probs=205.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcccceee
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKE 138 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~~~~~ 138 (381)
+|+|||||++||+||+.|++.|++|+|+|+++++||++.+.. .+|+.+|.|+|.+...++++.++++++|++....+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 79 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRE 79 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccHHHHHHHHHcCCCCceeecc
Confidence 589999999999999999999999999999999999998877 5689999999999888889999999999976654433
Q ss_pred cceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHHHHcCC
Q 016871 139 HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGV 218 (381)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~ 218 (381)
....+.... ... .+ .....++.. ......+.+.......... ........+.+++.+|+.+. .
T Consensus 80 ~~~~~~~~~---~~~--~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~l~~~-~ 142 (434)
T PRK07233 80 TKTGYYVDG---KLY--PL--------GTPLELLRF-PHLSLIDKFRLGLLTLLAR--RIKDWRALDKVPAEEWLRRW-S 142 (434)
T ss_pred CceEEEECC---eEe--cC--------CCHHHHHcC-CCCCHHHHHHhHHHHHhhh--hcccccccccccHHHHHHHh-c
Confidence 222222211 110 00 011112211 1223333333322221111 01112345678999999986 4
Q ss_pred ChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhccc---CCCceEEecCCcCccchHHHHHHHHhcCCEEEeccee
Q 016871 219 PDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK---HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (381)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V 295 (381)
.+...+.++.+++...++.+++++++......+....... ....+.++.+| ++.++++|.+.+++.|++|+++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~l~~~l~~~l~~~g~~v~~~~~V 221 (434)
T PRK07233 143 GEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGG-FATLIDALAEAIEARGGEIRLGTPV 221 (434)
T ss_pred CHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCC-HHHHHHHHHHHHHhcCceEEeCCCe
Confidence 6677788899999998989999999876655444321111 11234556655 8899999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCCCcccchHHHHHhccCCCCCEEEEEEEEecCCC
Q 016871 296 QKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLK 368 (381)
Q Consensus 296 ~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~ 368 (381)
++|+.++++ ++.+ +.+|+++.||+||+|+|+..+..|++. .+....+.++++.+.+..++++.++++++
T Consensus 222 ~~i~~~~~~-~~~~-~~~~~~~~ad~vI~a~p~~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 290 (434)
T PRK07233 222 TSVVIDGGG-VTGV-EVDGEEEDFDAVISTAPPPILARLVPD--LPADVLARLRRIDYQGVVCMVLKLRRPLT 290 (434)
T ss_pred eEEEEcCCc-eEEE-EeCCceEECCEEEECCCHHHHHhhcCC--CcHHHHhhhcccCccceEEEEEEecCCCC
Confidence 999985443 4334 456668999999999999989999875 33455677888999999999999999864
No 6
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.96 E-value=1.9e-27 Score=229.31 Aligned_cols=297 Identities=17% Similarity=0.236 Sum_probs=202.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHC------CCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCC
Q 016871 58 LKVVIAGAGLAGLSTAKYLADA------GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~------g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~ 131 (381)
.+|+|||||++||+||+.|++. |++|+|+|+++++||++.+.. ..|+.+|.|+|++...++++.++++++|++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~ 80 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDLNLE 80 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence 4799999999999999999986 379999999999999999987 568999999999988888899999999998
Q ss_pred cccceeecceeeecCCCCCccccccCCC--CCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccH
Q 016871 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPE--VLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (381)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (381)
....+......+... .+....+.... .+|.. +..++. ...+++..+++......... ....+.+|+
T Consensus 81 ~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~p~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~sv 148 (463)
T PRK12416 81 EEMVYNETGISYIYS--DNTLHPIPSDTIFGIPMS---VESLFS-STLVSTKGKIVALKDFITKN------KEFTKDTSL 148 (463)
T ss_pred cceecCCCCceEEEE--CCeEEECCCCCeecCCCC---hHHhhc-CCcCCHHHHHHhhhhhccCC------CCCCCCCCH
Confidence 664433321111111 11111111110 01111 112221 23333334443333222111 012357899
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhh-------c----------ccCCCceEEecCCcCc
Q 016871 210 QEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFL-------Q----------EKHGSKMAFLDGNPPE 272 (381)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----------~~~g~~~~~~~~~~~~ 272 (381)
.+|+++. +..++.+.++.++...++..++++++....+..+..+. . ...+..+.++.+| ++
T Consensus 149 ~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG-~~ 226 (463)
T PRK12416 149 ALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGG-LS 226 (463)
T ss_pred HHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCC-HH
Confidence 9999875 77888889999999888888999988754333321110 0 0112234445454 88
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCCCcccchHHHHHhccCC
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLV 352 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~~~~l~ 352 (381)
.|+++|++.+.+ ++|+++++|++|+.++++ +.|++.+|+++.||+||+|+|++.+..|++++. ....+.++.
T Consensus 227 ~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~--~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~----l~~~~~~~~ 298 (463)
T PRK12416 227 TIIDRLEEVLTE--TVVKKGAVTTAVSKQGDR--YEISFANHESIQADYVVLAAPHDIAETLLQSNE----LNEQFHTFK 298 (463)
T ss_pred HHHHHHHHhccc--ccEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEECCCHHHHHhhcCCcc----hhHHHhcCC
Confidence 999999998864 689999999999986555 357788887899999999999999999987532 335678888
Q ss_pred CCCEEEEEEEEecCCCCC-CCceeec
Q 016871 353 GVPVINIHIWFDRKLKNT-YDHLLFS 377 (381)
Q Consensus 353 ~~~~~~v~l~~~~~~~~~-~~~~~~~ 377 (381)
+.++.+|++.|+++.|.. .+.++|.
T Consensus 299 ~~~~~~v~l~~~~~~~~~~~~g~G~l 324 (463)
T PRK12416 299 NSSLISIYLGFDILDEQLPADGTGFI 324 (463)
T ss_pred CCceEEEEEEechhhcCCCCCceEEE
Confidence 889999999999875432 2445555
No 7
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.96 E-value=3.2e-27 Score=228.06 Aligned_cols=294 Identities=22% Similarity=0.335 Sum_probs=203.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC----CCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~ 132 (381)
..||+|||||++||+||+.|+++ |++|+|+|+++++||++.+.. .+|+.+|.|+|++...++++.++++++|++.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~ 80 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDLGLEH 80 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHcCCCc
Confidence 46999999999999999999998 999999999999999999976 5789999999999988888999999999876
Q ss_pred ccceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHH
Q 016871 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (381)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (381)
...+......+.... .+.... +|. .+..++.. ....+.+++........ .. .....+++.+|
T Consensus 81 ~~~~~~~~~~~~~~~-~g~~~~------~p~---~~~~~~~~-~~~~~~~~~~~~~~~~~---~~----~~~~d~s~~e~ 142 (462)
T TIGR00562 81 VLVSDATGQRYVLVN-RGKLMP------VPT---KIAPFVKT-GLFSLGGKLRAGMDFIR---PA----SPGKDESVEEF 142 (462)
T ss_pred ccccCCCCceEEEEC-CCceec------CCC---ChHHHhcC-CCCCchhhHHhhhhhcc---CC----CCCCCcCHHHH
Confidence 543311111111100 011111 111 11222221 22333333333221110 00 01224899999
Q ss_pred HHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHh-----------hcc--------------cCCCceEEec
Q 016871 213 MRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF-----------LQE--------------KHGSKMAFLD 267 (381)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--------------~~g~~~~~~~ 267 (381)
+++. +.+++.+.++.++..+++..+++++++...+..+... ... ..|..+..+.
T Consensus 143 l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (462)
T TIGR00562 143 VRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLA 221 (462)
T ss_pred HHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecc
Confidence 9876 6788889999999999998888888877554333111 000 0111122233
Q ss_pred CCcCccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCCCcccchHHHHH
Q 016871 268 GNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKR 347 (381)
Q Consensus 268 ~~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~ 347 (381)
+| ++.|++.|++.+. .++|+++++|++|..+++++ .|++.+|+++.||+||+|+|+..+..|+++ .+....++
T Consensus 222 gG-~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~--~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~--~~~~~~~~ 294 (462)
T TIGR00562 222 TG-LETLPEEIEKRLK--LTKVYKGTKVTKLSHRGSNY--TLELDNGVTVETDSVVVTAPHKAAAGLLSE--LSNSASSH 294 (462)
T ss_pred hh-HHHHHHHHHHHhc--cCeEEcCCeEEEEEecCCcE--EEEECCCcEEEcCEEEECCCHHHHHHHhcc--cCHHHHHH
Confidence 33 6678888887774 26899999999999865553 477888878999999999999999999986 44567788
Q ss_pred hccCCCCCEEEEEEEEecCCCCC-CCceeec
Q 016871 348 LEKLVGVPVINIHIWFDRKLKNT-YDHLLFS 377 (381)
Q Consensus 348 ~~~l~~~~~~~v~l~~~~~~~~~-~~~~~~~ 377 (381)
+.++.+.+..++++.|++++|.. ...++|.
T Consensus 295 l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l 325 (462)
T TIGR00562 295 LDKIHSPPVANVNLGFPEGSVDGELEGFGFL 325 (462)
T ss_pred HhcCCCCceEEEEEEEchHHcCCCCCceEEE
Confidence 99999999999999999887643 3445554
No 8
>PRK07208 hypothetical protein; Provisional
Probab=99.96 E-value=9.7e-27 Score=225.46 Aligned_cols=288 Identities=22% Similarity=0.320 Sum_probs=200.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~~ 135 (381)
...||+|||||++||+||+.|+++|++|+|+|+++++||++.+.. .+|+.+|.|+|++...++.+.+++++++......
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~~ 81 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDFL 81 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHhcCCCccc
Confidence 467999999999999999999999999999999999999998866 5789999999999988899999999998633322
Q ss_pred eeec-ceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHHH
Q 016871 136 WKEH-SMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (381)
Q Consensus 136 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 214 (381)
+... ..++. .+....+ |.. ....+. ...+....+.......... ....+.+++.+|+.
T Consensus 82 ~~~~~~~~~~----~g~~~~~------p~~---~~~~l~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~e~l~ 140 (479)
T PRK07208 82 LRPRLSRIYY----RGKFFDY------PLK---AFDALK---NLGLWRTAKCGASYLKARL-----RPRKEEDSFEDWVI 140 (479)
T ss_pred cccccceEEE----CCEEecC------Ccc---hhHHHH---hCCHhHHHHHHHHHHHHhc-----CCCCCCCCHHHHHH
Confidence 2111 11111 1111111 110 111111 1122222222222211110 01125689999999
Q ss_pred HcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHH---------HHHhhccc----------C---CCceEEecCCcCc
Q 016871 215 KQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIA---------LNRFLQEK----------H---GSKMAFLDGNPPE 272 (381)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~----------~---g~~~~~~~~~~~~ 272 (381)
+. +.+++.+.++.++...++..++++++..+.... +...+... . ...+.++.+| +.
T Consensus 141 ~~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG-~~ 218 (479)
T PRK07208 141 NR-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLG-PG 218 (479)
T ss_pred Hh-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCC-cc
Confidence 75 778889999999999999999999988753321 11111110 0 1234444544 88
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe--CCe--EEEecEEEEccCHHHHhccCCCcccchHHHHHh
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDILKLQLPENWKEMAYFKRL 348 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~--~G~--~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~~ 348 (381)
.++++|.+.+++.|++|++|++|++|..++++.++.+... +|+ ++.||+||+|+|++.+..++++. .+....+.+
T Consensus 219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~-~~~~~~~~~ 297 (479)
T PRK07208 219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPP-PPPEVRAAA 297 (479)
T ss_pred hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCC-CCHHHHHHH
Confidence 9999999999999999999999999998666654444432 353 58999999999999888887643 445667778
Q ss_pred ccCCCCCEEEEEEEEecCCC
Q 016871 349 EKLVGVPVINIHIWFDRKLK 368 (381)
Q Consensus 349 ~~l~~~~~~~v~l~~~~~~~ 368 (381)
+.+++.+.+++++.|+++..
T Consensus 298 ~~l~~~~~~~v~l~~~~~~~ 317 (479)
T PRK07208 298 AGLRYRDFITVGLLVKELNL 317 (479)
T ss_pred hCCCcceeEEEEEEecCCCC
Confidence 89999999999999999865
No 9
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.96 E-value=6.2e-27 Score=225.48 Aligned_cols=286 Identities=25% Similarity=0.334 Sum_probs=195.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~~ 135 (381)
.+|+|||||++||+||+.|++.| ++|+|+|+++++||++.+.. .+|+.+|.|+|++...++++.++++++|++....
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~ 79 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKELGLEDELV 79 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHcCCcccee
Confidence 47999999999999999999987 89999999999999999976 5689999999988877888999999999875432
Q ss_pred eee-cceeeecCCCCCccccccCCC--CCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHH
Q 016871 136 WKE-HSMIFAMPNKPGEFSRFDFPE--VLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (381)
Q Consensus 136 ~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (381)
... ....+.. .+....+.... ..+. .+..++. .......++++..... ........+.+++.+|
T Consensus 80 ~~~~~~~~~~~---~g~~~~~p~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~e~ 146 (451)
T PRK11883 80 ANTTGQSYIYV---NGKLHPIPPGTVMGIPT---SIAPFLF-AGLVSPIGKLRAAADL------RPPRWKPGQDQSVGAF 146 (451)
T ss_pred cCCCCcceEEE---CCeEEECCCCCeeccCC---Cchhhhc-CCCCCHHHHHHhhCcc------cCCCCCCCCCcCHHHH
Confidence 221 1111111 11111111000 0111 1111110 1222222222221111 0011122356899999
Q ss_pred HHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhc---------------c--cCCCceEEecCCcCccch
Q 016871 213 MRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ---------------E--KHGSKMAFLDGNPPERLC 275 (381)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--~~g~~~~~~~~~~~~~l~ 275 (381)
+.+. +.+.+.+.++.+++...++.+++.+++......+..+.. . ..+..+.++.+| ++.++
T Consensus 147 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~l~ 224 (451)
T PRK11883 147 FRRR-FGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGG-LQSLI 224 (451)
T ss_pred HHHh-ccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccH-HHHHH
Confidence 9875 778888999999998888889999887665433221110 0 012334445544 78888
Q ss_pred HHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCCCcccchHHHHHhccCCCCC
Q 016871 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVP 355 (381)
Q Consensus 276 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~ 355 (381)
+.|++.+.+. +|+++++|++|+.++++ +.|.+.+|+++.||+||+|+|+..+..++++. ...+.++++.+.+
T Consensus 225 ~~l~~~l~~~--~i~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~----~~~~~~~~~~~~~ 296 (451)
T PRK11883 225 EALEEKLPAG--TIHKGTPVTKIDKSGDG--YEIVLSNGGEIEADAVIVAVPHPVLPSLFVAP----PAFALFKTIPSTS 296 (451)
T ss_pred HHHHHhCcCC--eEEeCCEEEEEEEcCCe--EEEEECCCCEEEcCEEEECCCHHHHHHhccCh----hHHHHHhCCCCCc
Confidence 8888877543 89999999999985554 34778888889999999999999899987642 3457788999999
Q ss_pred EEEEEEEEecCC
Q 016871 356 VINIHIWFDRKL 367 (381)
Q Consensus 356 ~~~v~l~~~~~~ 367 (381)
..++++.|++++
T Consensus 297 ~~~v~l~~~~~~ 308 (451)
T PRK11883 297 VATVALAFPESA 308 (451)
T ss_pred eEEEEEEecccc
Confidence 999999999996
No 10
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.95 E-value=6.6e-27 Score=217.04 Aligned_cols=278 Identities=26% Similarity=0.402 Sum_probs=200.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~~ 135 (381)
+.|+|||||++||+|||+|++++ ..|+|+|+.+++||...+.. .+|+.+|.|+|.+...-+.+.++++++|++..+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~ 79 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKELGLEDKLL 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHhCcHHhhc
Confidence 47999999999999999999999 89999999999999999986 8899999999988866677999999999998877
Q ss_pred eeecceeeecCCCCCccccccCCCC--CCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHH
Q 016871 136 WKEHSMIFAMPNKPGEFSRFDFPEV--LPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWM 213 (381)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 213 (381)
|......|.. ..+++..+..... +|..... +.......+.+.. ..+.....+..++.+|+
T Consensus 80 ~~~~~~~~i~--~~gkl~p~P~~~i~~ip~~~~~-----------~~~~~~~~~~~~~-----~~~~~~~~~d~sv~~f~ 141 (444)
T COG1232 80 WNSTARKYIY--YDGKLHPIPTPTILGIPLLLLS-----------SEAGLARALQEFI-----RPKSWEPKQDISVGEFI 141 (444)
T ss_pred cCCcccceEe--eCCcEEECCccceeecCCcccc-----------chhHHHHHHHhhh-----cccCCCCCCCcCHHHHH
Confidence 5543332111 1122222211110 0100000 0111111111111 11112345678999999
Q ss_pred HHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCC------------------ceEEecCCcCccch
Q 016871 214 RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS------------------KMAFLDGNPPERLC 275 (381)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------------------~~~~~~~~~~~~l~ 275 (381)
+++ +.+++.+.++.++..++++.+.+++|+......+.... ..++. ...+..+| ++.|.
T Consensus 142 r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e-~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG-~~~l~ 218 (444)
T COG1232 142 RRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAE-RKYGSLLRGAKKEGLPKQSLKKEKFGYLRGG-LQSLI 218 (444)
T ss_pred HHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhh-hhhcchhhhhhhccCcccccccccccccCcc-HHHHH
Confidence 987 88999999999999999999999999884433322211 11111 12333344 88999
Q ss_pred HHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCCCcccchHHHHHhccCCCCC
Q 016871 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVP 355 (381)
Q Consensus 276 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~ 355 (381)
++|.+.+..+ |+++++|++|..+.++. .+.+.+|+.+.||.||+|+|++.+..|+++ ....+...++++.+
T Consensus 219 ~al~~~l~~~---i~~~~~V~~i~~~~~~~--~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~----~~~~~~~~~~~~~s 289 (444)
T COG1232 219 EALAEKLEAK---IRTGTEVTKIDKKGAGK--TIVDVGGEKITADGVISTAPLPELARLLGD----EAVSKAAKELQYTS 289 (444)
T ss_pred HHHHHHhhhc---eeecceeeEEEEcCCcc--EEEEcCCceEEcceEEEcCCHHHHHHHcCC----cchhhhhhhccccc
Confidence 9999988765 99999999999864454 366778888999999999999999999998 23457889999999
Q ss_pred EEEEEEEEecC
Q 016871 356 VINIHIWFDRK 366 (381)
Q Consensus 356 ~~~v~l~~~~~ 366 (381)
.++|.+.++.+
T Consensus 290 ~~~vv~~~~~~ 300 (444)
T COG1232 290 VVTVVVGLDEK 300 (444)
T ss_pred eEEEEEEeccc
Confidence 99999999996
No 11
>PLN02576 protoporphyrinogen oxidase
Probab=99.95 E-value=1.8e-26 Score=224.58 Aligned_cols=294 Identities=22% Similarity=0.344 Sum_probs=201.8
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHHC-CCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCC
Q 016871 53 RPSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (381)
Q Consensus 53 ~~~~~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~ 131 (381)
..+.++||+|||||++||+||++|.+. |++|+|+|+++++||++.+.. .+|+.+|.|+|++...++.+..++++ |++
T Consensus 8 ~~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~ 85 (496)
T PLN02576 8 AAASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDS-GLR 85 (496)
T ss_pred cccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHc-CCh
Confidence 345677999999999999999999999 999999999999999999987 57899999999998777778777777 877
Q ss_pred cccceeec-ceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHH
Q 016871 132 DRLQWKEH-SMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQ 210 (381)
Q Consensus 132 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 210 (381)
....+... ...+.. ..++... +|.. ...++. ...+++.++++.......... . ....+.+++.
T Consensus 86 ~~~~~~~~~~~~~~~--~~g~~~~------~p~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~sv~ 149 (496)
T PLN02576 86 DDLVFPDPQAPRYVV--WNGKLRP------LPSN---PIDLPT-FDLLSAPGKIRAGLGAFGWKR---P-PPPGREESVG 149 (496)
T ss_pred hheecCCCCceEEEE--ECCEEEE------cCCC---hHHhcC-cCcCChhHHHHHhHHHhhccC---C-CCCCCCCcHH
Confidence 55433221 111110 0111111 1111 112221 233444444443322221100 0 0123568999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHh---------------hccc---------------CC
Q 016871 211 EWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF---------------LQEK---------------HG 260 (381)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~---------------~g 260 (381)
+|+.+. +.+++.+.++.++..++++.++++++....+..+... .... .+
T Consensus 150 ~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (496)
T PLN02576 150 EFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKG 228 (496)
T ss_pred HHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccC
Confidence 999886 8889999999999999999999999887655443221 0000 11
Q ss_pred CceEEecCCcCccchHHHHHHHHhcCCEEEecceeeEEEEcCCC-CEEEEEEeCC-eEEEecEEEEccCHHHHhccCCCc
Q 016871 261 SKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDG-TVKNFLLTNG-NVIDGDAYVFATPVDILKLQLPEN 338 (381)
Q Consensus 261 ~~~~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~-~~~~V~t~~G-~~i~ad~VI~A~~~~~~~~Ll~~~ 338 (381)
.....+.+| ++.|+++|++.+.+ .+|++|++|++|+.++++ +.+.+.+.+| +++.||+||+|+|+..+..|+++
T Consensus 229 ~~~~~~~gG-~~~L~~~la~~l~~--~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~- 304 (496)
T PLN02576 229 QTVGSFRGG-LQTLPDALAKRLGK--DKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRP- 304 (496)
T ss_pred CeeEeccch-HHHHHHHHHHhhCc--CcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcc-
Confidence 112223333 77888888877621 589999999999986665 4333444455 36999999999999999999876
Q ss_pred ccchHHHHHhccCCCCCEEEEEEEEecCCCCC
Q 016871 339 WKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT 370 (381)
Q Consensus 339 ~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~ 370 (381)
.+....+.+.++.+.+..+|++.|++++|..
T Consensus 305 -~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~ 335 (496)
T PLN02576 305 -KSPAAADALPEFYYPPVAAVTTSYPKEAVKR 335 (496)
T ss_pred -cCHHHHHHhccCCCCceEEEEEEEchHHccc
Confidence 3344678899999999999999999987753
No 12
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=207.63 Aligned_cols=307 Identities=39% Similarity=0.611 Sum_probs=247.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCccccee
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQWK 137 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~~~~ 137 (381)
++|+|+|||++||+||+.|+++|++|+|+|+++++||.+.++...+|...|.|-|++.++|.++.+++++++.+....+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~ 80 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLR 80 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999887777
Q ss_pred ecceee-ecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHHHHc
Q 016871 138 EHSMIF-AMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 216 (381)
Q Consensus 138 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 216 (381)
.....+ ..+...+.+.++.... .|.....+..++.. +.....++++....+............+++..++.+|+++.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~-~p~p~~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~ 158 (485)
T COG3349 81 EHTKTFVGSGTRPGAIGRFARPD-APQPTNGLKAFLRL-PQLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEK 158 (485)
T ss_pred hhhhhhcccCCCCCcccccccCC-CCCcchhhhhhhhc-cccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHh
Confidence 766666 5566666666666655 23334444455544 36667777777766655533224556788999999999999
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhccc-CCCceEEecCCcCccchHHHHHHHHhcCCEEEeccee
Q 016871 217 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEK-HGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (381)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V 295 (381)
+.......+.+.++.....+..++.++.......+..++... .+.......++..+.++..+.+.+.+.|.+++...+|
T Consensus 159 g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv 238 (485)
T COG3349 159 GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPV 238 (485)
T ss_pred CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeecccee
Confidence 888888889999988888888999999987777777666555 5555566677778899999999999999999999999
Q ss_pred eEEEEcC---CCCEEEEEEeCCe---EEEecEEEEccCHHHHhccCCCcccchHHHHHhccCCCCCEEEEEEEEecCC
Q 016871 296 QKIELND---DGTVKNFLLTNGN---VIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKL 367 (381)
Q Consensus 296 ~~I~~~~---~~~~~~V~t~~G~---~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~ 367 (381)
+.|..+. ...++++... +. .+.++.++.+.+..-+...+|..|........+..+...|+.+++++|+.-.
T Consensus 239 ~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~ 315 (485)
T COG3349 239 KELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWV 315 (485)
T ss_pred eeeeccccccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEEEEeecCcc
Confidence 9999754 3446666665 42 3556677777787778889999888776778888899999999999999643
No 13
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=187.97 Aligned_cols=282 Identities=21% Similarity=0.300 Sum_probs=192.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeee---CCCCCeeecceeeecc-CCccHHHHHHHhCCC
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWK---DGDGDWYETGLHIFFG-AYPNIQNLFGELGIN 131 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~---~~~g~~~d~G~~~~~~-~~~~~~~l~~~~gl~ 131 (381)
...+|+|||+|++||+|||.|+++ ++|+++|+.+++||++.+.. +..|..+|+|.++..+ +|+++.++++++|.+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~ 85 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD 85 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence 567999999999999999999976 89999999999999999874 4567789999999986 999999999999998
Q ss_pred cccceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhc--CcchhhccccccH
Q 016871 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIG--GQAYVEAQDGLTV 209 (381)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~ 209 (381)
... ..+.+.+..+.+ .++|.... .+..++......--......+.+++++... ...........++
T Consensus 86 t~a----s~Msf~v~~d~g---glEy~g~t-----gl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl 153 (447)
T COG2907 86 TKA----SFMSFSVSLDMG---GLEYSGLT-----GLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTL 153 (447)
T ss_pred Ccc----cceeEEEEecCC---ceeeccCC-----CccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccH
Confidence 543 223333322222 12222210 011111111111111222233333333321 1122234456899
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCC-------CceEEecCCcCccchHHHHHHH
Q 016871 210 QEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG-------SKMAFLDGNPPERLCLPIVEHI 282 (381)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~l~~~l~~~l 282 (381)
.+||++++++..|.+.++.++..+++..+..+++.......+ .|+. .+| ..|..+.|| ....++.|.+.+
T Consensus 154 ~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~-~f~~-nhGll~l~~rp~wrtV~gg-S~~yvq~laa~~ 230 (447)
T COG2907 154 AQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL-VFTD-NHGLLYLPKRPTWRTVAGG-SRAYVQRLAADI 230 (447)
T ss_pred HHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH-HHHh-ccCceecCCCCceeEcccc-hHHHHHHHhccc
Confidence 999999999999999999999999998877777665444333 2222 233 334445444 556666666544
Q ss_pred HhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCCCcccchHHHHHhccCCCCCEEEEE
Q 016871 283 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIH 360 (381)
Q Consensus 283 ~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~ 360 (381)
+..|+++++|.+|..-.+|++ ++..+|++-++|.||+||.++.+..||++. .|+ .++.+..+.|.....|.
T Consensus 231 ---~~~i~t~~~V~~l~rlPdGv~--l~~~~G~s~rFD~vViAth~dqAl~mL~e~-sp~-e~qll~a~~Ys~n~aVl 301 (447)
T COG2907 231 ---RGRIETRTPVCRLRRLPDGVV--LVNADGESRRFDAVVIATHPDQALALLDEP-SPE-ERQLLGALRYSANTAVL 301 (447)
T ss_pred ---cceeecCCceeeeeeCCCceE--EecCCCCccccceeeeecChHHHHHhcCCC-CHH-HHHHHHhhhhhhceeEE
Confidence 457999999999998778865 666779888999999999999899999984 333 34588888887543443
No 14
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.93 E-value=1.7e-23 Score=199.77 Aligned_cols=294 Identities=30% Similarity=0.448 Sum_probs=201.2
Q ss_pred HHHHHHHHCCCceEEEeccccCCceeeeeeCCC-CCeeecceeeeccCCccHHHHHHHhCCCcccceeecceeeecCCCC
Q 016871 71 STAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-GDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKP 149 (381)
Q Consensus 71 ~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~-g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~~~~~~~~~~~~~~~~ 149 (381)
+||+.|+++|++|+|+|+++++||++.+....+ ++.+|.|+|++.+.++++.++++++|++...........+..+.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~-- 78 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDPG-- 78 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCCcceecCC--
Confidence 489999999999999999999999999987322 34599999999988999999999999986543212222222111
Q ss_pred CccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHHHHcCCChHHHHHHHHH
Q 016871 150 GEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIA 229 (381)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~ 229 (381)
+....+... .++.+......++ ....+...++.+....+....... ....+.+++.+|+++.+..+.+.+.++.+
T Consensus 79 ~~~~~~~~~-~~~~p~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~l~~~~~~~~~~~~~~~p 153 (419)
T TIGR03467 79 GRLSRLRLS-RLPAPLHLARGLL-RAPGLSWADKLALARALLALRRTR---FRALDDTTVGDWLQAAGQSERLIERLWEP 153 (419)
T ss_pred CCceeecCC-CCCCCHHHHHHHh-cCCCCCHHHHHHHHHHHHHHHhcC---ccccCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 111011111 1222222122222 233445544444433222111110 12456789999999987788888889999
Q ss_pred HHhhcCCCCCCcchHHHHHHHHHH-hhcccCCCceEEecCCcCccch-HHHHHHHHhcCCEEEecceeeEEEEcCCCCEE
Q 016871 230 MSKALNFINPDELSMQCILIALNR-FLQEKHGSKMAFLDGNPPERLC-LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVK 307 (381)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~l~-~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~ 307 (381)
++...+..++++++.......+.. +.....+....++.+| +..+. +.|++.+++.|++|++|++|++|+.++++..+
T Consensus 154 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG-~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~ 232 (419)
T TIGR03467 154 LLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVP-LSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGIRA 232 (419)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCC-HHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceE
Confidence 998888889999998877665543 2222223345666665 44544 55888998899999999999999986555432
Q ss_pred EEEEeCCeEEEecEEEEccCHHHHhccCCCcccchHHHHHhccCCCCCEEEEEEEEecCCCCCCCceeec
Q 016871 308 NFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFS 377 (381)
Q Consensus 308 ~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~ 377 (381)
+.+.+|+++.||+||+|+|++++..|++.. ...+.++++++.+..++++.|++|+|...++.++.
T Consensus 233 -~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~----~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~ 297 (419)
T TIGR03467 233 -LVLSGGETLPADAVVLAVPPRHAASLLPGE----DLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLV 297 (419)
T ss_pred -EEecCCccccCCEEEEcCCHHHHHHhCCCc----hHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeec
Confidence 223467689999999999999999998762 35567889999999999999999997555555554
No 15
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.93 E-value=4.6e-25 Score=199.99 Aligned_cols=290 Identities=19% Similarity=0.199 Sum_probs=180.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCccc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRL 134 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~ 134 (381)
....||||||+|++||++|+.|.+.|++|+|+|++++.||++.+... .+...|.|++++..+...+..+.+++|++...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~ 83 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHDALLAYAKEFGVPLEP 83 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccchhhhhhHHhcCCCCCc
Confidence 56789999999999999999999999999999999999999999875 88899999999988777899999999998765
Q ss_pred ceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHHH
Q 016871 135 QWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (381)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 214 (381)
.......+.......... +....... ..++. ...+................+...+.+.+++.+| .
T Consensus 84 fi~~g~~~~~~~~~~~~~-----p~~~~~~~----~d~~~----~~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-~ 149 (450)
T COG1231 84 FIRDGDNVIGYVGSSKST-----PKRSLTAA----ADVRG----LVAELEAKARSAGELDPGLTPEDRELDLESLAAW-K 149 (450)
T ss_pred eeccCccccccccccccc-----chhccchh----hhhcc----hhhhhhhhhhcccccCcccCcchhhhhhHHHHhh-h
Confidence 554333322211111111 00000000 00000 0001111111111111122223334455566666 1
Q ss_pred Hc---CCChHHHHHHHHHHHhhcCC-CCCCcchH------HHHHHHHHHhhcccCCCceEEecCCcCccchHHHHHHHHh
Q 016871 215 KQ---GVPDRVTTEVFIAMSKALNF-INPDELSM------QCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQS 284 (381)
Q Consensus 215 ~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~l~~ 284 (381)
.. +++..+.. ...++ .+..+... ......+................ |+++.+.+++++.+
T Consensus 150 ~~~~~~~~~~~~a-------~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~-GGmd~la~Afa~ql-- 219 (450)
T COG1231 150 TSSLRGLSRDPGA-------RVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRL-GGMDQLAEAFAKQL-- 219 (450)
T ss_pred hccccccccCccc-------eeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccC-ccHHHHHHHHHHHh--
Confidence 00 01100000 00010 11111111 11111111111112222222222 44888888888777
Q ss_pred cCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCCCcccchHHHHHhccCCCCCEEEEEEEEe
Q 016871 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFD 364 (381)
Q Consensus 285 ~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~ 364 (381)
|-.|.++++|++|.++++++ .|++.+.+++.+|+||+|+|..++..+-=.+..+..++++++.++|.+..++.+.|+
T Consensus 220 -~~~I~~~~~V~rI~q~~~gV--~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~ 296 (450)
T COG1231 220 -GTRILLNEPVRRIDQDGDGV--TVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYKQAAKGVPYGSATKIGVAFS 296 (450)
T ss_pred -hceEEecCceeeEEEcCCeE--EEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHHHHhcCcCcchheeeeeecC
Confidence 45799999999999977774 488888348999999999999988887544457778889999999999999999999
Q ss_pred cCCCCCCC
Q 016871 365 RKLKNTYD 372 (381)
Q Consensus 365 ~~~~~~~~ 372 (381)
+|||++.+
T Consensus 297 rpFWee~~ 304 (450)
T COG1231 297 RPFWEEAG 304 (450)
T ss_pred chhhhhcc
Confidence 99998776
No 16
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.93 E-value=4.4e-24 Score=207.94 Aligned_cols=301 Identities=20% Similarity=0.228 Sum_probs=181.0
Q ss_pred EEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCc--cccee
Q 016871 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND--RLQWK 137 (381)
Q Consensus 60 v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~--~~~~~ 137 (381)
|||||||++||+||..|++.|++|+|+|+++.+||++.++. .+|+.+|.|++++... ..+.++++++|++. .+.+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~-~~~~~l~~~lg~~l~~~l~~~ 78 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMP-EALEELFALAGRDLADYVELV 78 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEccc-cHHHHHHHHcCCChhheEEEE
Confidence 69999999999999999999999999999999999999988 4899999999998732 34678888888542 23333
Q ss_pred ecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcC-C--CCChHHHHHHhhhhhh-----hh----------hc--C
Q 016871 138 EHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNN-E--MLTWPEKVKFAIGLLP-----AI----------IG--G 197 (381)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~-----~~----------~~--~ 197 (381)
.....+.+...++.. +.+.. ....+.+.+... + ...+............ .. .. .
T Consensus 79 ~~~~~~~~~~~~g~~--~~~~~----~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (502)
T TIGR02734 79 PLDPFYRLCWEDGSQ--LDVDN----DQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADL 152 (502)
T ss_pred ECCCceEEECCCCCE--EEecC----CHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhh
Confidence 322222221111211 11111 111111111100 0 0000000000000000 00 00 0
Q ss_pred cchhhccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcCccchHH
Q 016871 198 QAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLP 277 (381)
Q Consensus 198 ~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 277 (381)
..........++.+++++. +.++..+.++.. .....+.++.+.+..+.+... ... .+. ..++.+| ...++++
T Consensus 153 ~~~~~~~~~~s~~~~~~~~-~~~~~l~~~l~~-~~~~~g~~p~~~~~~~~l~~~---~~~-~~g-~~~~~gG-~~~l~~a 224 (502)
T TIGR02734 153 PQLLALLAWRSLYSKVARF-FSDERLRQAFSF-HALFLGGNPFRTPSIYALISA---LER-EWG-VWFPRGG-TGALVAA 224 (502)
T ss_pred HhhhhccCcCCHHHHHHhh-cCCHHHHHHhcc-cceeeccCcccchHHHHHHHH---HHh-hce-EEEcCCC-HHHHHHH
Confidence 0111223457888888775 444444444432 122334566665544333221 111 122 2345444 7899999
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH-HHhccCCCcccchHHHHHhccCCCC-C
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPENWKEMAYFKRLEKLVGV-P 355 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~-~~~~Ll~~~~~~~~~~~~~~~l~~~-~ 355 (381)
|.+.++++|++|+++++|++|..+ ++.+++|++.+|+++.||+||+|++.. +...|++....+..+.+.+++.++. +
T Consensus 225 l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s 303 (502)
T TIGR02734 225 MAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPS 303 (502)
T ss_pred HHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCe
Confidence 999999999999999999999974 455678999998889999999999975 4556777654443344555666644 6
Q ss_pred EEEEEEEEe---cCCCCCCCceeec
Q 016871 356 VINIHIWFD---RKLKNTYDHLLFS 377 (381)
Q Consensus 356 ~~~v~l~~~---~~~~~~~~~~~~~ 377 (381)
.+++++.++ +++....+|.+|.
T Consensus 304 ~~~~~lgl~~~~~~~~~~~~~~~~~ 328 (502)
T TIGR02734 304 LFVLYFGLLGVDGHWPQLAHHTLCF 328 (502)
T ss_pred eeEEEEeeccccCcCCCcCceeEec
Confidence 889999998 5665333444454
No 17
>PLN02268 probable polyamine oxidase
Probab=99.93 E-value=1.5e-24 Score=207.70 Aligned_cols=285 Identities=20% Similarity=0.247 Sum_probs=168.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccC--CccHHHHHHHhCCCcccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA--YPNIQNLFGELGINDRLQ 135 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~--~~~~~~l~~~~gl~~~~~ 135 (381)
.+|+|||||++||+||+.|.+.|++|+|+|+++++||++.+.. ..|+.+|.|++++.+. ...+.++++++|++....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~ 79 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRT 79 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHHhCCceEec
Confidence 4799999999999999999999999999999999999999865 5688999999999753 334889999999964321
Q ss_pred eeecceeeecCCCCCccccccCCCCC-CCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHHH
Q 016871 136 WKEHSMIFAMPNKPGEFSRFDFPEVL-PAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (381)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 214 (381)
.......+. .....+..+ .... +........+.. ... .+...... ......+.+|+.+|++
T Consensus 80 ~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~--~~~~~~~~~s~~~~~~ 141 (435)
T PLN02268 80 SGDNSVLYD--HDLESYALF--DMDGNQVPQELVTKVGE---------TFE---RILEETEK--VRDEHEEDMSLLQAIS 141 (435)
T ss_pred cCCcccccc--cccccccee--cCCCCCCCHHHHHHHHH---------HHH---HHHHHHHH--HHhccCCCcCHHHHHH
Confidence 101111110 000000000 0000 000111111100 000 00000000 0001234567888765
Q ss_pred HcCC------ChHHHHHHHHHH---HhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcCccchHHHHHHHHhc
Q 016871 215 KQGV------PDRVTTEVFIAM---SKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSL 285 (381)
Q Consensus 215 ~~~~------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~l~~~ 285 (381)
+..- ...+.++++..+ ...++..++++++...... ...+ .|.. .+..+| ++.++++|.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~--~~~~---~g~~-~~~~~G-~~~l~~~l~~----- 209 (435)
T PLN02268 142 IVLERHPELRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQ--EELL---EGGH-GLMVRG-YDPVINTLAK----- 209 (435)
T ss_pred HHhhhCcccccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCC--cccc---CCCc-eeecCC-HHHHHHHHhc-----
Confidence 4310 011333333222 2334556777776543100 0000 1111 122222 4455554432
Q ss_pred CCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhcc-C-CCcccchHHHHHhccCCCCCEEEEEEEE
Q 016871 286 GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ-L-PENWKEMAYFKRLEKLVGVPVINIHIWF 363 (381)
Q Consensus 286 G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~L-l-~~~~~~~~~~~~~~~l~~~~~~~v~l~~ 363 (381)
+++|+++++|++|..+++++ .|++.+|+++.||+||+|+|...+..+ + -.+..|....++++++.+.+..|+.+.|
T Consensus 210 ~~~i~~~~~V~~i~~~~~~v--~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f 287 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNGV--KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHF 287 (435)
T ss_pred cCceeCCCeeEEEEEcCCcE--EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEe
Confidence 56899999999999865553 488888878999999999999988643 2 1234566677889999999999999999
Q ss_pred ecCCCCCCCcee
Q 016871 364 DRKLKNTYDHLL 375 (381)
Q Consensus 364 ~~~~~~~~~~~~ 375 (381)
++++|......+
T Consensus 288 ~~~fw~~~~~~g 299 (435)
T PLN02268 288 DSVFWPNVEFLG 299 (435)
T ss_pred CCCCCCCCceee
Confidence 999996544333
No 18
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.93 E-value=7.6e-24 Score=205.69 Aligned_cols=298 Identities=22% Similarity=0.249 Sum_probs=181.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCC--ccHHHHHHHhCCCcc-c
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY--PNIQNLFGELGINDR-L 134 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~--~~~~~l~~~~gl~~~-~ 134 (381)
.||+|||||++||+||..|+++|++|+|+|+++.+||++.++. .+|+.+|.|+|++.+.. ..+..+++++|++.. .
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~ 80 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEA 80 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEecCcCCHHHHHHHHcCCCCccc
Confidence 6899999999999999999999999999999999999999988 48999999999987542 236788899998732 1
Q ss_pred c-eeecceeeecCCCCCccccc--------cCCCCCCCchh---hHHHHHh-------cCCC---CChHHHHHHhhhhhh
Q 016871 135 Q-WKEHSMIFAMPNKPGEFSRF--------DFPEVLPAPLN---GILAILR-------NNEM---LTWPEKVKFAIGLLP 192 (381)
Q Consensus 135 ~-~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~---~~~~~~~-------~~~~---~~~~~~~~~~~~~~~ 192 (381)
. .++....+ .++....+... ++....|.... .+..+.. .... ....+.......+.+
T Consensus 81 ~~~d~~~~~~-~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (492)
T TIGR02733 81 KILDPACAVD-LPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRP 159 (492)
T ss_pred ccCCCCcEEE-ECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcCh
Confidence 1 11111111 11100000000 00000111110 1110000 0000 001111110000000
Q ss_pred hhhcCcchhhccccccHHHHHHHcC-CChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcC
Q 016871 193 AIIGGQAYVEAQDGLTVQEWMRKQG-VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPP 271 (381)
Q Consensus 193 ~~~~~~~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 271 (381)
. ..........++.+++++.+ ..++..+.++..........++++.+..+....+ .+.....| . .++.|| +
T Consensus 160 ~----~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G-~-~~~~GG-~ 231 (492)
T TIGR02733 160 D----TLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVL-QMAQAPHG-L-WHLHGS-M 231 (492)
T ss_pred h----hhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHh-hccccCCC-c-eeecCc-H
Confidence 0 00111233578899998764 3445555555543322333345555544332222 12111122 2 335554 8
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCC-----eEEEecEEEEccCHHHHhccCCCcccchHHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDILKLQLPENWKEMAYFK 346 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G-----~~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~ 346 (381)
+.|+++|.+.++++|++|+++++|++|..++ +.+.+|.+.+| +++.||+||+|++++.+..|+++...+..+.+
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~-~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~ 310 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKG-GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRK 310 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeC-CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHH
Confidence 9999999999999999999999999999854 44445665554 57999999999999988889986555666777
Q ss_pred HhccCCCCC-EEEEEEEEecC
Q 016871 347 RLEKLVGVP-VINIHIWFDRK 366 (381)
Q Consensus 347 ~~~~l~~~~-~~~v~l~~~~~ 366 (381)
.++++++.+ .+++++.+++.
T Consensus 311 ~~~~~~~s~~~~~v~l~~~~~ 331 (492)
T TIGR02733 311 RLKKLPEPSGAFVFYLGVKRA 331 (492)
T ss_pred HHhcCCCCCceEEEEEeeccc
Confidence 788888775 67899999884
No 19
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=3.4e-23 Score=196.96 Aligned_cols=294 Identities=24% Similarity=0.316 Sum_probs=170.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCcc-HHHHHHHhCCCc
Q 016871 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPN-IQNLFGELGIND 132 (381)
Q Consensus 54 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~-~~~l~~~~gl~~ 132 (381)
.....+|||||||++||+||++|.+.|++|+|+|+++++||++.+.....+..+|.|++++.+.+.+ +.-+.+++|++.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~~ 91 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLEL 91 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCccc
Confidence 3467899999999999999999999999999999999999999999877788899999999999885 777889999986
Q ss_pred ccceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhc-------CCC----CChHHHHHHhhhhhhhhhcCcchh
Q 016871 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRN-------NEM----LTWPEKVKFAIGLLPAIIGGQAYV 201 (381)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 201 (381)
.. +.....++...+. .....+....+.....+.....+ ... ..+.+.........
T Consensus 92 ~~-~~~~~~l~~~~~~---~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---------- 157 (501)
T KOG0029|consen 92 YK-VRDTCPLFNENGG---ESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSAS---------- 157 (501)
T ss_pred ce-ecccccccccCCc---ccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHHH----------
Confidence 43 3333334433321 11222222111111111111110 000 00000000000000
Q ss_pred hccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcCccchHHHHHH
Q 016871 202 EAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEH 281 (381)
Q Consensus 202 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~ 281 (381)
..+....++...+.......+.+..+..... ...+.++.. .......+. ..+ ......+| ...++..++.
T Consensus 158 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~d~~~~-~~~-~~~~~~~G-~~~v~~~la~- 227 (501)
T KOG0029|consen 158 ---RLMKTLLELLLEGEADKVLQWHLVNLELTFI-AHLENASAR--LWDQDELFG-GGG-IHLLMKGG-YEPVVNSLAE- 227 (501)
T ss_pred ---HHHHhhHHHhhhhhhhHHHHHHHHHHHHHhh-ccHhHhhHH--hhhhhhhcc-ccc-chhHhhCC-ccHHHhhcCC-
Confidence 0000111111111111112222222211110 111111111 111111111 111 11222222 4455555543
Q ss_pred HHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhc--cCCCcccchHHHHHhccCCCCCEEEE
Q 016871 282 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINI 359 (381)
Q Consensus 282 l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~--Ll~~~~~~~~~~~~~~~l~~~~~~~v 359 (381)
|..|+++..|..|+..+++. +.+++.++..+.+|+||+|+|..++.. +...++.|....++++++......+|
T Consensus 228 ----~l~I~~~~~v~~i~~~~~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv 302 (501)
T KOG0029|consen 228 ----GLDIHLNKRVRKIKYGDDGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKV 302 (501)
T ss_pred ----CcceeeceeeEEEEEecCCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEE
Confidence 88999999999999976765 235556666699999999999998877 44445577788899999999999999
Q ss_pred EEEEecCCC-CCCCceee
Q 016871 360 HIWFDRKLK-NTYDHLLF 376 (381)
Q Consensus 360 ~l~~~~~~~-~~~~~~~~ 376 (381)
.+.|++.+| ...+.++.
T Consensus 303 ~l~F~~~fW~~~~d~fg~ 320 (501)
T KOG0029|consen 303 ILEFPRVFWDQDIDFFGI 320 (501)
T ss_pred EEEeccccCCCCcCeEEE
Confidence 999999999 44444443
No 20
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.92 E-value=1.4e-22 Score=196.55 Aligned_cols=297 Identities=17% Similarity=0.220 Sum_probs=175.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccC----Ccc-HHHHHHHhCCCc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA----YPN-IQNLFGELGIND 132 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~----~~~-~~~l~~~~gl~~ 132 (381)
+||||||||++||+||..|+++|++|+|+||++.+||+++++. .+|+.+|.|.+.+.+. .++ +.+.++.+|...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKL 79 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcc
Confidence 5899999999999999999999999999999999999999987 4899999999987633 223 455666666433
Q ss_pred ccceeecceeeecCCCCCccccccCCC-----------CCCCchhhHHHHHhcCC----------CCChHHHHHHhhhhh
Q 016871 133 RLQWKEHSMIFAMPNKPGEFSRFDFPE-----------VLPAPLNGILAILRNNE----------MLTWPEKVKFAIGLL 191 (381)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 191 (381)
..........+..+ ++.. +.+.. ..|.....+.++++... ...+...........
T Consensus 80 ~~~~~~~~~~~~~~--~g~~--~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (493)
T TIGR02730 80 ETIPDPVQIHYHLP--NGLN--VKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFF 155 (493)
T ss_pred cccCCCccEEEECC--CCee--EeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHh
Confidence 22111111111111 1110 11111 01111122222211100 000000000000000
Q ss_pred hhhhcCcchhhccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcC
Q 016871 192 PAIIGGQAYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPP 271 (381)
Q Consensus 192 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 271 (381)
. .......+......++.+++++. +.++....++..........++.+.+.......+. ....+ ...++.+| .
T Consensus 156 ~-~~~~~~~~~~~~~~s~~~~~~~~-~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~---~~~~~-g~~~~~gG-~ 228 (493)
T TIGR02730 156 K-HPLACLGLAKYLPQNAGDIARRY-IRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFS---DRHYG-GINYPKGG-V 228 (493)
T ss_pred h-chhhhhHHHHHhhccHHHHHHHh-cCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhc---ccccc-eEecCCCh-H
Confidence 0 00000001112246778888776 34444555554332222222334554433332221 11122 23455554 7
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH-HHhccCCCcccchHHHHHhcc
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLPENWKEMAYFKRLEK 350 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~-~~~~Ll~~~~~~~~~~~~~~~ 350 (381)
..++++|.+.++++|++|+++++|++|..+ ++.+.+|++.+|+++.||+||+|++++ +...|+++...+..++..+++
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~ 307 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRN 307 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhh
Confidence 899999999999999999999999999984 566778999999889999999999876 555688875555555555566
Q ss_pred CCCC-CEEEEEEEEecCC
Q 016871 351 LVGV-PVINIHIWFDRKL 367 (381)
Q Consensus 351 l~~~-~~~~v~l~~~~~~ 367 (381)
+... +.+++++.++.+.
T Consensus 308 ~~~s~s~~~~~l~l~~~~ 325 (493)
T TIGR02730 308 YVKSPSFLSLHLGVKADV 325 (493)
T ss_pred ccCCCceEEEEEEecCcc
Confidence 6655 5889999999854
No 21
>PLN02529 lysine-specific histone demethylase 1
Probab=99.91 E-value=5e-22 Score=196.03 Aligned_cols=286 Identities=19% Similarity=0.210 Sum_probs=171.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCC-CC--CeeecceeeeccCCcc-HHHHHHHhCC
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DG--DWYETGLHIFFGAYPN-IQNLFGELGI 130 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~-~g--~~~d~G~~~~~~~~~~-~~~l~~~~gl 130 (381)
....||+|||||++||+||..|+++|++|+|+|+++++||++.+.... +| ..+|.|++++.+...+ +..+.+++|+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl 237 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSI 237 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCC
Confidence 456799999999999999999999999999999999999999887643 23 3799999999977666 7789999998
Q ss_pred CcccceeecceeeecCCCCCccccccCCCCCCCchh-hHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccH
Q 016871 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLN-GILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (381)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (381)
+.... .....++.. ++.....+... .+. .+..+++ ....+..... ...+..|+
T Consensus 238 ~~~~~-~~~~~~~~~---~G~~v~~~~~~----~~~~~~~~~l~------------~~~~l~~~~~------~~~~d~Sl 291 (738)
T PLN02529 238 PLHKV-RDNCPLYKP---DGALVDKEIDS----NIEFIFNKLLD------------KVTELRQIMG------GFANDISL 291 (738)
T ss_pred Ccccc-CCCceEEeC---CCcCcchhhhh----hHHHHHHHHHH------------HHHHHHHhcc------cCccCCCH
Confidence 75422 222222221 11111000000 000 0001111 0100000000 12345678
Q ss_pred HHHHHHcC------CChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcCccchHHHHHHHH
Q 016871 210 QEWMRKQG------VPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQ 283 (381)
Q Consensus 210 ~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~l~ 283 (381)
.+++++.. ..+ ....++..............++......... ......+.....+.+| +++|+++|++
T Consensus 292 ~~~le~~~~~~~~~~t~-~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~-~~~~e~~G~~~~i~GG-~~~Li~aLA~--- 365 (738)
T PLN02529 292 GSVLERLRQLYGVARST-EERQLLDWHLANLEYANAGCLSDLSAAYWDQ-DDPYEMGGDHCFLAGG-NWRLINALCE--- 365 (738)
T ss_pred HHHHHHHHhhhccCCCH-HHHHHHHHHHHHhceecCCChHHhhhhHhhh-ccccccCCceEEECCc-HHHHHHHHHh---
Confidence 88886532 111 1122333222222223333333222211111 1111223334444444 6777777765
Q ss_pred hcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhc--cCCCcccchHHHHHhccCCCCCEEEEEE
Q 016871 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVPVINIHI 361 (381)
Q Consensus 284 ~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~--Ll~~~~~~~~~~~~~~~l~~~~~~~v~l 361 (381)
++.|++|++|++|..+++++ .|++ +++++.||+||+|+|..++.. +.-.++.|....++++++.+.+..||++
T Consensus 366 --~L~IrLnt~V~~I~~~~dGV--tV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L 440 (738)
T PLN02529 366 --GVPIFYGKTVDTIKYGNDGV--EVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAM 440 (738)
T ss_pred --cCCEEcCCceeEEEEcCCeE--EEEE-CCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEE
Confidence 34699999999999866663 3655 445899999999999998874 3212235666778999999999999999
Q ss_pred EEecCCCCCC-Cceeec
Q 016871 362 WFDRKLKNTY-DHLLFS 377 (381)
Q Consensus 362 ~~~~~~~~~~-~~~~~~ 377 (381)
.|++|||... +.+++.
T Consensus 441 ~F~~~FW~~~~~~fG~l 457 (738)
T PLN02529 441 VFPSVFWGEELDTFGCL 457 (738)
T ss_pred EeCCccccCCCCceEEE
Confidence 9999999653 334443
No 22
>PLN02676 polyamine oxidase
Probab=99.90 E-value=4.3e-22 Score=191.45 Aligned_cols=286 Identities=19% Similarity=0.180 Sum_probs=169.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCC-ceEEEeccccCCceeeeeeCCCCCeeecceeeecc----CCccHHHHHHHhC
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG----AYPNIQNLFGELG 129 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~----~~~~~~~l~~~~g 129 (381)
+..+||+|||||++||+||++|++.|. +|+|+|+++++||++.+.. ..|+.+|.|++++.+ ....+.++.+++|
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g 102 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEGVGGPESNPIWELANKLK 102 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEcccCcccChHHHHHHhcC
Confidence 457799999999999999999999998 6999999999999998865 568899999999964 2344788999999
Q ss_pred CCcccce-ee-cceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccc
Q 016871 130 INDRLQW-KE-HSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGL 207 (381)
Q Consensus 130 l~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (381)
+...... .. ...++.. +++.. + ......+.. ................. ....+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~---~g~~~--------~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (487)
T PLN02676 103 LRTFYSDFDNLSSNIYKQ---DGGLY--------P--KKVVQKSMK---------VADASDEFGENLSISLS-AKKAVDI 159 (487)
T ss_pred CceeecCccccceeEECC---CCCCC--------C--HHHHHHHHH---------HHHHHHHHHHHHHHhhc-ccCCCCc
Confidence 8754211 11 0111111 11110 0 000001000 00000000000000000 0111233
Q ss_pred cH--HHHHHHcCCChHHHHHHHHHHHh-hcCCCCCCcchHHHHHHHHHHhhcccCCCceEEe-cCCcCccchHHHHHHHH
Q 016871 208 TV--QEWMRKQGVPDRVTTEVFIAMSK-ALNFINPDELSMQCILIALNRFLQEKHGSKMAFL-DGNPPERLCLPIVEHIQ 283 (381)
Q Consensus 208 s~--~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~l~~~l~~~l~ 283 (381)
++ .+.+... ............+.. .....+++.++...... .. .+. ..|....+. ..++.++|++.|++.+.
T Consensus 160 s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~-~~-~~~-~~g~~~~~~~~~~G~~~l~~~La~~~~ 235 (487)
T PLN02676 160 SILTAQRLFGQ-VPKTPLEMVIDYYNYDYEFAEPPRVTSLKNTEP-NP-TFV-DFGEDEYFVADPRGYESLVYYLAEQFL 235 (487)
T ss_pred cHHHHHHHHhh-CCCCHHHHHHHHHhccceeccCccccchhhcCc-cc-ccc-cCCCceEEeecCCCHHHHHHHHHhhcc
Confidence 33 2223221 110111111111111 11344556666543221 00 111 122222232 12347889999988775
Q ss_pred hc------CCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhc--cCCCcccchHHHHHhccCCCCC
Q 016871 284 SL------GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL--QLPENWKEMAYFKRLEKLVGVP 355 (381)
Q Consensus 284 ~~------G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~--Ll~~~~~~~~~~~~~~~l~~~~ 355 (381)
++ +.+|++|++|++|..++++. .|+|.+|+++.||+||+|+|..++.. +.-.++.|...+++++++.+..
T Consensus 236 ~~~~~~~~~~~I~l~~~V~~I~~~~~gV--~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~ 313 (487)
T PLN02676 236 STKSGKITDPRLKLNKVVREISYSKNGV--TVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAV 313 (487)
T ss_pred cccccccCCCceecCCEeeEEEEcCCcE--EEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCcee
Confidence 43 25799999999999865653 48899998899999999999998875 4333346666778899999999
Q ss_pred EEEEEEEEecCCCCC
Q 016871 356 VINIHIWFDRKLKNT 370 (381)
Q Consensus 356 ~~~v~l~~~~~~~~~ 370 (381)
..|+++.|++|||+.
T Consensus 314 ~~Kv~l~f~~~FW~~ 328 (487)
T PLN02676 314 YTKIFLKFPYKFWPS 328 (487)
T ss_pred eEEEEEEeCCCCCCC
Confidence 999999999999965
No 23
>PLN02568 polyamine oxidase
Probab=99.89 E-value=1e-21 Score=190.13 Aligned_cols=298 Identities=15% Similarity=0.161 Sum_probs=164.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCC-----CceEEEeccccCCceeeeeeCCCCCeeecceeeeccCC-ccHHHHHHHhC
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAG-----HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY-PNIQNLFGELG 129 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g-----~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~-~~~~~l~~~~g 129 (381)
...||+|||||++||+||+.|++.| ++|+|+|+++++||++.+.. ..|+.+|.|++++.+.. ..+.++++++|
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~g~~~~~~~~l~~~~g 82 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE-FGGERIEMGATWIHGIGGSPVYKIAQEAG 82 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEE-eCCeEEecCCceeCCCCCCHHHHHHHHhC
Confidence 3579999999999999999999887 89999999999999999876 46889999999998653 44889999999
Q ss_pred CCcccc-eeec-----ceeeecCCCCCccccccCCCCCCCch-hhHHHHHhcCCCC--ChHHHHHHhhhhhhhhhcCcch
Q 016871 130 INDRLQ-WKEH-----SMIFAMPNKPGEFSRFDFPEVLPAPL-NGILAILRNNEML--TWPEKVKFAIGLLPAIIGGQAY 200 (381)
Q Consensus 130 l~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 200 (381)
+..... +... ...+.. ..+.. ........+ ..+..+++..... +..+.. ..+...........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~--~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~ 154 (539)
T PLN02568 83 SLESDEPWECMDGFPDRPKTVA--EGGFE----VDPSIVESISTLFRGLMDDAQGKLIEPSEVD--EVDFVKLAAKAARV 154 (539)
T ss_pred CccccCcceecccccccceEEc--cCCcC----CCHHHHHHHHHHHHHHHHHhhcccccccccc--cccccccchhccch
Confidence 854321 1110 000000 00000 000000000 0111111110000 000000 00000000000000
Q ss_pred hhccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHh------------h----cc---cCCC
Q 016871 201 VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRF------------L----QE---KHGS 261 (381)
Q Consensus 201 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~----~~---~~g~ 261 (381)
.......++.+|+++. +.. +.+....+.....+....+.++....+..+..+ . .. ....
T Consensus 155 ~~~~~~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~g 232 (539)
T PLN02568 155 CESGGGGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFPG 232 (539)
T ss_pred hccCCCCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecCC
Confidence 0000123677777652 111 111111111111111111111111111111000 0 00 0111
Q ss_pred ceEEecCCcCccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhc------cC
Q 016871 262 KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL------QL 335 (381)
Q Consensus 262 ~~~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~------Ll 335 (381)
....+.+| .+.|++.|++.+. +.+|++|++|++|..++++ +.|++.+|+++.||+||+|+|+..+.. +.
T Consensus 233 ~~~~i~gG-~~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~--v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~ 307 (539)
T PLN02568 233 EEITIAKG-YLSVIEALASVLP--PGTIQLGRKVTRIEWQDEP--VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGL 307 (539)
T ss_pred CeEEECCc-HHHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCe--EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccce
Confidence 12233343 7788888888774 3479999999999986554 348888888899999999999998874 12
Q ss_pred CCcccchHHHHHhccCCCCCEEEEEEEEecCCCC
Q 016871 336 PENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKN 369 (381)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~ 369 (381)
-.+.+|...+++++++.+....||++.|++|||.
T Consensus 308 F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~ 341 (539)
T PLN02568 308 FSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDG 341 (539)
T ss_pred ecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCC
Confidence 2224666678899999999999999999999874
No 24
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=9.7e-22 Score=189.35 Aligned_cols=264 Identities=21% Similarity=0.263 Sum_probs=151.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhC-CCcc-
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELG-INDR- 133 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~g-l~~~- 133 (381)
..+||||||||+.||+||..|+++|++|+|+||++.+||++.+... .|+.+|.|++++... ....++++++ ++..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~-~Gf~fd~G~~~~~~~--~~~~~~~~l~~l~~~~ 78 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFEL-DGFRFDTGPSWYLMP--DPGPLFRELGNLDADG 78 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEec-cceEeccCcceeecC--chHHHHHHhccCcccc
Confidence 4689999999999999999999999999999999999999999884 499999999887733 3336677777 4432
Q ss_pred cceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcC---CCCChHHHHHHhhhhhhhhhc----Cc--------
Q 016871 134 LQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNN---EMLTWPEKVKFAIGLLPAIIG----GQ-------- 198 (381)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~-------- 198 (381)
+.+......+.....++.... +..........+... ....+................ ..
T Consensus 79 l~~~~~~~~~~~~~~~g~~~~------~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (487)
T COG1233 79 LDLLPPDPAYRVFLPDGDAID------VYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVP 152 (487)
T ss_pred eeeeccCCceeeecCCCCEEE------ecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhcc
Confidence 333222222222222111100 000011111111000 000011111111110000000 00
Q ss_pred ------chhhccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcCc
Q 016871 199 ------AYVEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPE 272 (381)
Q Consensus 199 ------~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 272 (381)
-........+..+++... +.++..+..+........ .++...++.. .+.... .....+.++.|| +.
T Consensus 153 ~~~~~~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a~~---~~~~~~--~~~~G~~~p~GG-~~ 224 (487)
T COG1233 153 DTPERLLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPALY---LLLSHL--GLSGGVFYPRGG-MG 224 (487)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhHHH---HHHHHh--cccCCeeeeeCC-HH
Confidence 001112334455555554 444444444443222222 3444443111 111122 223334555555 99
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCCC
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 337 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~~ 337 (381)
.++++|++.++++|++|+++++|++|..+ +++.+++.+.+|+.+.+|.||.+........+.+.
T Consensus 225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~ 288 (487)
T COG1233 225 ALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADPALLARLLGE 288 (487)
T ss_pred HHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCchhhhhhhhhh
Confidence 99999999999999999999999999984 54455688888878999999999988545555543
No 25
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.88 E-value=1e-20 Score=187.67 Aligned_cols=280 Identities=19% Similarity=0.257 Sum_probs=163.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCC-C--CeeecceeeeccCCcc-HHHHHHHhCC
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-G--DWYETGLHIFFGAYPN-IQNLFGELGI 130 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~-g--~~~d~G~~~~~~~~~~-~~~l~~~~gl 130 (381)
....+|+|||||++||+||+.|++.|++|+|+|+++++||++.+....+ + ..+|.|++++.+...+ +..+++++|+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl 315 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGL 315 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCC
Confidence 3567999999999999999999999999999999999999998876332 2 3689999999876554 6789999998
Q ss_pred CcccceeecceeeecCCCCCccccccCCCCCCCch-hhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccH
Q 016871 131 NDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPL-NGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (381)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (381)
+.... .....++. .++......... .. ..+..+++. ...+.... .+. ......++
T Consensus 316 ~~~~~-~~~~~~~~---~dG~~~~~~~~~----~v~~~f~~lL~~------------~~klr~~~---~~~-~~~~D~SL 371 (808)
T PLN02328 316 PLHKV-RDICPLYL---PDGKAVDAEIDS----KIEASFNKLLDR------------VCKLRQAM---IEE-VKSVDVNL 371 (808)
T ss_pred ceEec-CCCceEEe---CCCcCcchhhhh----hHHHHHHHHHHH------------HHHHHHhh---hhc-ccccCcCH
Confidence 64321 11111221 111111101110 00 001111111 00000000 000 01123566
Q ss_pred HHHHHHc----CCC-hHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcCccchHHHHHHHHh
Q 016871 210 QEWMRKQ----GVP-DRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQS 284 (381)
Q Consensus 210 ~~~l~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~l~~ 284 (381)
.++++.. +.. +.....++..............++.......... .....+.....+.+| +..|+++|++.+
T Consensus 372 g~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~gs~ls~LSl~~w~qd-~~~e~~G~~~~v~GG-~~~Li~aLa~~L-- 447 (808)
T PLN02328 372 GTALEAFRHVYKVAEDPQERMLLNWHLANLEYANASLMSNLSMAYWDQD-DPYEMGGDHCFIPGG-NDTFVRELAKDL-- 447 (808)
T ss_pred HHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccchhhHHHHHhhhhhcc-ccccCCCeEEEECCc-HHHHHHHHHhhC--
Confidence 7766532 110 1111122221111111111111111111000000 001122334444444 888888888765
Q ss_pred cCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhc----cCCCcccchHHHHHhccCCCCCEEEEE
Q 016871 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL----QLPENWKEMAYFKRLEKLVGVPVINIH 360 (381)
Q Consensus 285 ~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~----Ll~~~~~~~~~~~~~~~l~~~~~~~v~ 360 (381)
.|++|++|++|...++++. | +.+|+++.||+||+|+|..++.. +.|. .|....++++++.+.+..||.
T Consensus 448 ---~I~ln~~V~~I~~~~dgV~--V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~--LP~~K~~AI~~l~yG~~~KV~ 519 (808)
T PLN02328 448 ---PIFYERTVESIRYGVDGVI--V-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPE--LPQRKKDAIQRLGYGLLNKVA 519 (808)
T ss_pred ---CcccCCeeEEEEEcCCeEE--E-EeCCeEEEcCEEEECCCHHHHhhcccccCCC--CCHHHHHHHHcCCCcceEEEE
Confidence 4899999999998665532 4 55777899999999999998873 3343 566777899999999999999
Q ss_pred EEEecCCCCC
Q 016871 361 IWFDRKLKNT 370 (381)
Q Consensus 361 l~~~~~~~~~ 370 (381)
+.|+++||..
T Consensus 520 L~F~~~FW~~ 529 (808)
T PLN02328 520 LLFPYNFWGG 529 (808)
T ss_pred EEeCCccccC
Confidence 9999999964
No 26
>PLN03000 amine oxidase
Probab=99.88 E-value=1.6e-20 Score=186.04 Aligned_cols=284 Identities=21% Similarity=0.256 Sum_probs=163.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCC---CCeeecceeeeccCCcc-HHHHHHHhCCC
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD---GDWYETGLHIFFGAYPN-IQNLFGELGIN 131 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~---g~~~d~G~~~~~~~~~~-~~~l~~~~gl~ 131 (381)
...+|+|||||++||+||+.|.+.|++|+|+|+++++||++.+....+ ++.+|.|++++.+...+ +..+++++|++
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~ 262 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSS 262 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCc
Confidence 568999999999999999999999999999999999999998876332 57799999999977665 56678999987
Q ss_pred cccceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHH
Q 016871 132 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQE 211 (381)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 211 (381)
.... .....++... +........... ...+..+++ .......+.. . .....++.+
T Consensus 263 l~~~-~~~~~ly~~~---Gk~v~~~~~~~v---e~~fn~lLd---------~~~~lr~l~~---~------~~~D~SLg~ 317 (881)
T PLN03000 263 LYKV-RDKCPLYRVD---GKPVDPDVDLKV---EVAFNQLLD---------KASKLRQLMG---D------VSMDVSLGA 317 (881)
T ss_pred eeec-CCCCeEEEeC---CcCCchhhhhhH---HHHHHHHHH---------HHHHHHHHhc---c------cCcCCcHHH
Confidence 4321 1222222211 111000000000 000011111 0000000000 0 001122222
Q ss_pred HHHH------cCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcCccchHHHHHHHHhc
Q 016871 212 WMRK------QGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSL 285 (381)
Q Consensus 212 ~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~l~~~ 285 (381)
+++. ..+.++ ...++..............++..... ..........+.....+.+| ++.|+++|++.+
T Consensus 318 aLe~~~~~~g~~~t~e-~~~Ll~w~lanLE~~~as~ls~LSl~-~wdqd~~~e~~G~~~~v~GG-~~~LieaLa~~L--- 391 (881)
T PLN03000 318 ALETFRQVSGNDVATE-EMGLFNWHLANLEYANAGLVSKLSLA-FWDQDDPYDMGGDHCFLPGG-NGRLVQALAENV--- 391 (881)
T ss_pred HHHHHHHHHcccCCHH-HHHHHHHHHHHHhcccccCHHHHHHH-HhhhcccccCCCceEEeCCC-HHHHHHHHHhhC---
Confidence 2211 011111 01111111111111112222211111 00100001122333444444 888888888766
Q ss_pred CCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHh----ccCCCcccchHHHHHhccCCCCCEEEEEE
Q 016871 286 GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK----LQLPENWKEMAYFKRLEKLVGVPVINIHI 361 (381)
Q Consensus 286 G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~----~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l 361 (381)
.|+++++|++|..+++++ .|++.++ ++.||+||+|+|..++. .+.|+ +|...+++++++.+....||.+
T Consensus 392 --~I~Ln~~Vt~I~~~~dgV--~V~~~~~-~~~AD~VIvTVPlgVLk~~~I~F~Pp--LP~~K~~AI~rL~~G~l~KViL 464 (881)
T PLN03000 392 --PILYEKTVQTIRYGSNGV--KVIAGNQ-VYEGDMVLCTVPLGVLKNGSIKFVPE--LPQRKLDCIKRLGFGLLNKVAM 464 (881)
T ss_pred --CcccCCcEEEEEECCCeE--EEEECCc-EEEeceEEEcCCHHHHhhCceeeCCC--CCHHHHHHHHcCCCcceEEEEE
Confidence 499999999999865553 3666544 89999999999999888 34454 6677789999999999999999
Q ss_pred EEecCCCCCC-Cceeec
Q 016871 362 WFDRKLKNTY-DHLLFS 377 (381)
Q Consensus 362 ~~~~~~~~~~-~~~~~~ 377 (381)
.|+++||+.. +.+++.
T Consensus 465 ~Fd~~FW~~d~~~FG~l 481 (881)
T PLN03000 465 LFPYVFWSTDLDTFGHL 481 (881)
T ss_pred EeCCccccCCCCceeEE
Confidence 9999999654 334443
No 27
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.86 E-value=2.9e-20 Score=166.13 Aligned_cols=308 Identities=19% Similarity=0.229 Sum_probs=206.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCc--eEEEeccccCCceeeeeeCCCCCeeecceeeeccCCc---cHHHHHHHhC
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHK--PLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP---NIQNLFGELG 129 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~--v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~---~~~~l~~~~g 129 (381)
...++|+|+|||++||++||+|++++.+ |+++|+.+++||.+.+....+++++|.|++.+.+..+ ...+++.++|
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLG 88 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLG 88 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcC
Confidence 4578999999999999999999999765 5669999999999999556889999999999886666 5889999999
Q ss_pred CCcccceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHH--HHhhhhhhhhhcCcchhhccccc
Q 016871 130 INDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKV--KFAIGLLPAIIGGQAYVEAQDGL 207 (381)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 207 (381)
++..+..-+..... .+.....+...++..-+.+...... .+..+...+ ....+..+.. .-.....+
T Consensus 89 l~~e~~~i~~~~pa------aknr~l~~~~~L~~vP~sl~~s~~~-~l~p~~k~L~~a~l~e~fr~~-----~~~~~~dE 156 (491)
T KOG1276|consen 89 LEDELQPIDISHPA------AKNRFLYVPGKLPTVPSSLVGSLKF-SLQPFGKPLLEAFLRELFRKK-----VSDPSADE 156 (491)
T ss_pred ccceeeecCCCChh------hhheeeccCcccccCCccccccccc-ccCcccchhHHHHHhhhcccc-----CCCCCccc
Confidence 98654322211110 0001111222222221222211100 000000000 0111111110 01234568
Q ss_pred cHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCC--------------------------
Q 016871 208 TVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGS-------------------------- 261 (381)
Q Consensus 208 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------------------------- 261 (381)
++.+|++++ +.++..+..+.+++.++++.+++++++...+..+...- ..+|+
T Consensus 157 SV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~E-qk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~ 234 (491)
T KOG1276|consen 157 SVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVE-QKHGSIILGTIRAKFARKRTKKAETALSAQA 234 (491)
T ss_pred cHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHH-HhccchhHHHHHHHHHhhcCCCccchhhhhh
Confidence 999999886 77899999999999999999999999987776554311 11111
Q ss_pred ----ceEEecCCcCccchHHHHHHHHhcCCEEEecceeeEEEEcC-CCCEEEEEEeCCe-EEEecEEEEccCHHHHhccC
Q 016871 262 ----KMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTNGN-VIDGDAYVFATPVDILKLQL 335 (381)
Q Consensus 262 ----~~~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~-~~~~~~V~t~~G~-~i~ad~VI~A~~~~~~~~Ll 335 (381)
...+.-.++.+-+.+++.+.|.+..+.|.+.-++..+.... +++...+++.++. ....+++.++.++..+..|+
T Consensus 235 ~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll 314 (491)
T KOG1276|consen 235 KKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLL 314 (491)
T ss_pred cccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhc
Confidence 01111123378899999999988889999999999998644 4466567777774 34566677799999999999
Q ss_pred CCcccchHHHHHhccCCCCCEEEEEEEEecC-CCCCCCceeecc
Q 016871 336 PENWKEMAYFKRLEKLVGVPVINIHIWFDRK-LKNTYDHLLFSR 378 (381)
Q Consensus 336 ~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~-~~~~~~~~~~~~ 378 (381)
+.. .......+.+++|.|+..|++.|..+ ...+...++++-
T Consensus 315 ~~~--~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~Lv 356 (491)
T KOG1276|consen 315 RGL--QNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLV 356 (491)
T ss_pred ccc--chhhhhhhhcCCCCceEEEEEeccCcccccccccceeec
Confidence 984 34456889999999999999999987 555566666653
No 28
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.86 E-value=4.4e-20 Score=167.63 Aligned_cols=282 Identities=23% Similarity=0.287 Sum_probs=156.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCC-CceEEEeccccCCceeeeeeCCCCCeeecceeeeccC-CccHHHHHHHhCCCc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGA-YPNIQNLFGELGIND 132 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~~gl~~ 132 (381)
....+|||||||++||+||.+|.+.| .+|+|+|+.+++|||+.+....++ .+|.|++++.+. ...+.++.+++|...
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~-~ielGAqwihG~~gNpVY~la~~~g~~~ 97 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADG-VIELGAQWIHGEEGNPVYELAKEYGDLK 97 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCC-eEeecceeecCCCCChHHHHHHHhCccc
Confidence 45669999999999999999999775 589999999999999999885555 999999999984 344899999988211
Q ss_pred ccceeecceeeecCCCCCccccccCCCCCCCch-hhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHH
Q 016871 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPL-NGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQE 211 (381)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 211 (381)
. ....+..+. +. .......+.++... +.+.++...... .........+..|+.+
T Consensus 98 ~--~~~tg~~~~-~~----~~~~~~g~~V~~~~~~~~~~~~~~~~~------------------~~r~~~~~~~~~SvG~ 152 (498)
T KOG0685|consen 98 L--LEVTGPAYV-DN----FHTRSNGEVVPEELLDELNEITVTLSD------------------KLREAEIAHDEGSVGE 152 (498)
T ss_pred e--eccCCcccc-ce----eEEEecCccCcHHHHHHHHHHHHhhhh------------------hcccccccCccccHHH
Confidence 1 111111000 00 00000111111111 111111110000 0000000123344455
Q ss_pred HHHHc--------CC---ChHHHHHHHHHHHhhc---CCC-CCCcchHHHHHHHHHHhhcccCC-CceEEecCCcCccch
Q 016871 212 WMRKQ--------GV---PDRVTTEVFIAMSKAL---NFI-NPDELSMQCILIALNRFLQEKHG-SKMAFLDGNPPERLC 275 (381)
Q Consensus 212 ~l~~~--------~~---~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~l~ 275 (381)
++... .. ...+..+.+..+.... .+. +.++++.... ..|.. ..| ....+..-| ..++.
T Consensus 153 ~ln~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~----~ey~~-~~ge~~~~~~~kG-y~~iL 226 (498)
T KOG0685|consen 153 YLNSEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRAL----LEYTE-CPGEELLIWNKKG-YKRIL 226 (498)
T ss_pred HHHHHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhc----cceee-cCchhhheechhH-HHHHH
Confidence 44431 00 1111222222222111 111 1122221110 11100 011 011111111 34444
Q ss_pred HHHHHHHHhc----C--CEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhc----cCCCcccchHHH
Q 016871 276 LPIVEHIQSL----G--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL----QLPENWKEMAYF 345 (381)
Q Consensus 276 ~~l~~~l~~~----G--~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~----Ll~~~~~~~~~~ 345 (381)
.-|.+.+.+. | .+++++++|.+|...+.+.+ .|++.+|+.+.|||||++++.-+++. |.. +++|....
T Consensus 227 ~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~-P~LP~~K~ 304 (498)
T KOG0685|consen 227 KLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFV-PPLPAEKQ 304 (498)
T ss_pred HHHhccCCCcchhcCchhhhcccccceeeccCCCCcE-EEEEeCCcEEeccEEEEEeechhhhhhhhhhcC-CCCCHHHH
Confidence 4444443332 1 24666799999998655654 59999999999999999999887777 433 23666677
Q ss_pred HHhccCCCCCEEEEEEEEecCCCCC
Q 016871 346 KRLEKLVGVPVINIHIWFDRKLKNT 370 (381)
Q Consensus 346 ~~~~~l~~~~~~~v~l~~~~~~~~~ 370 (381)
++|+++..+.+.|++|-|.+|+|..
T Consensus 305 ~AIe~lgfGtv~KiFLE~E~pfwp~ 329 (498)
T KOG0685|consen 305 RAIERLGFGTVNKIFLEFEEPFWPS 329 (498)
T ss_pred HHHHhccCCccceEEEEccCCCCCC
Confidence 9999999999999999999999843
No 29
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.83 E-value=2.3e-20 Score=178.77 Aligned_cols=295 Identities=29% Similarity=0.341 Sum_probs=154.8
Q ss_pred hhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCC-CCeeecceeeeccCCccHHHHHHHhCCCcccceeecceeeec
Q 016871 67 LAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGD-GDWYETGLHIFFGAYPNIQNLFGELGINDRLQWKEHSMIFAM 145 (381)
Q Consensus 67 ~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~-g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~~~~~~~~~~~~ 145 (381)
++||+||+.|++.|++|+|+|+++++||++.+..... |+.+|.|++++.+.++.+..++.++++.....+.........
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 80 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLELSLETFPFPQIPFV 80 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHTTEEEEEESSEEEE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhcccccccccccceee
Confidence 6899999999999999999999999999999988654 899999999999888889999999998644333222111110
Q ss_pred CCCCCccccccCCCCCCCchhh---HHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHHHHcCCChHH
Q 016871 146 PNKPGEFSRFDFPEVLPAPLNG---ILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQGVPDRV 222 (381)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~ 222 (381)
................+..... ......... .+..................+........++.+++......+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (450)
T PF01593_consen 81 YWPFGDGRPPWPPSQLPRNLNEFAALISLARFFR--LLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQSFSEIF 158 (450)
T ss_dssp EEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccccccccccccccccccchhhhhhcccccc--ccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 0000000000000000000000 000000000 00000000000011111111111122233444444333222222
Q ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhc-----ccCCCceEEecCCcCccchHHHHHHHHhcCCEEEecceeeE
Q 016871 223 TTEVFIAMSKALNFINPDELSMQCILIALNRFLQ-----EKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQK 297 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V~~ 297 (381)
....+...............+.......+..... ......+.... ..+...+...+...|.+|++|++|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~g~~i~l~~~V~~ 234 (450)
T PF01593_consen 159 RESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGM----GGLSLALALAAEELGGEIRLNTPVTR 234 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEET----TTTHHHHHHHHHHHGGGEESSEEEEE
T ss_pred HHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecc----cchhHHHHHHHhhcCceeecCCccee
Confidence 2111222222211112222222211111111100 11111122222 23444455555556789999999999
Q ss_pred EEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHh--ccCCCcccchHHHHHhccCCCCCEEEEEEEEecCCCCCC
Q 016871 298 IELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK--LQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTY 371 (381)
Q Consensus 298 I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~--~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~ 371 (381)
|+.++++ + .|++.+|+++.||+||+|+|...+. .+.|. .+....++++++++.+..+|++.|++++|...
T Consensus 235 I~~~~~~-v-~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~--l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~ 306 (450)
T PF01593_consen 235 IEREDGG-V-TVTTEDGETIEADAVISAVPPSVLKNILLLPP--LPEDKRRAIENLPYSSVSKVFLGFDRPFWPPD 306 (450)
T ss_dssp EEEESSE-E-EEEETTSSEEEESEEEE-S-HHHHHTSEEEST--SHHHHHHHHHTEEEEEEEEEEEEESSGGGGST
T ss_pred ccccccc-c-ccccccceEEecceeeecCchhhhhhhhhccc--ccccccccccccccCcceeEEEeeeccccccc
Confidence 9995543 3 4889999899999999999999888 45554 44445677889999999999999999998664
No 30
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.83 E-value=7.3e-19 Score=167.31 Aligned_cols=264 Identities=18% Similarity=0.238 Sum_probs=163.5
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHC----CCceEEEeccccCCceeeeeeC-CCCCeeecceeeeccCCccHHHHHHHh
Q 016871 54 PSKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKD-GDGDWYETGLHIFFGAYPNIQNLFGEL 128 (381)
Q Consensus 54 ~~~~~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~~gg~~~~~~~-~~g~~~d~G~~~~~~~~~~~~~l~~~~ 128 (381)
.....+|+|||||++||+||++|++. |++|+|+|+++.+||++.++.. .+|+.++.|.. +...++.+.++++.+
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~i 97 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRSI 97 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHhc
Confidence 34568999999999999999999995 6899999999999999987542 46788877755 466777888888876
Q ss_pred CCCcccceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhcccccc
Q 016871 129 GINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLT 208 (381)
Q Consensus 129 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 208 (381)
.-.........+.++.....+.....+......... + ....+.+..+.+. .+.+..... ....+..+
T Consensus 98 psle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~-------~-d~~~~~L~~k~r~--~Ll~l~l~~---e~~Ld~~t 164 (576)
T PRK13977 98 PSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEI-------L-DTDKFGLSKKDRK--ELLKLLLTP---EEKLDDKT 164 (576)
T ss_pred cccCCCCcccccceeeeecCCcccceeeEEcCCCCE-------E-ECcCCCCCHHHHH--HHHHHhccC---HHHhCCcC
Confidence 321110000010111111111111111111000000 0 0112222222211 112222221 34677899
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcc----cCCCceEEecCCcCccchHHHHHHHHh
Q 016871 209 VQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE----KHGSKMAFLDGNPPERLCLPIVEHIQS 284 (381)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~l~~~l~~~l~~ 284 (381)
+.+|+....+ +..|..+.....++. +..|+..+...+.+|+.. .......+...++.+.++..|.+.|++
T Consensus 165 I~d~f~~~Ff-----~t~Fw~~w~t~FaF~-~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~ 238 (576)
T PRK13977 165 IEDWFSPEFF-----ETNFWYYWRTMFAFE-KWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLED 238 (576)
T ss_pred HHHHHhhcCc-----hhHHHHHHHHHHCCc-hhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHh
Confidence 9999998533 334445555555444 556888877777776433 233344556666788999999999999
Q ss_pred cCCEEEecceeeEEEEc-CC--CCEEEEEEeC-C--e---EEEecEEEEccCHHHHhccCCC
Q 016871 285 LGGEVRLNSRVQKIELN-DD--GTVKNFLLTN-G--N---VIDGDAYVFATPVDILKLQLPE 337 (381)
Q Consensus 285 ~G~~i~~~t~V~~I~~~-~~--~~~~~V~t~~-G--~---~i~ad~VI~A~~~~~~~~Ll~~ 337 (381)
+||+|+++|+|++|..+ ++ +.+.+|...+ | + ....|.||+|+|..+...-+++
T Consensus 239 ~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G~ 300 (576)
T PRK13977 239 HGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYGD 300 (576)
T ss_pred CCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccCC
Confidence 99999999999999984 23 5677887753 3 2 2467999999988766554443
No 31
>PLN02976 amine oxidase
Probab=99.82 E-value=1e-18 Score=178.06 Aligned_cols=288 Identities=17% Similarity=0.210 Sum_probs=157.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCc--------c-HHHHHH
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYP--------N-IQNLFG 126 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~--------~-~~~l~~ 126 (381)
...+|+|||||++|+++|+.|.+.|++|+|+|+++.+||++.+.....++.+|.|++++.+... + ...+++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~ 771 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICA 771 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHH
Confidence 4679999999999999999999999999999999999999887654457889999999886422 2 334678
Q ss_pred HhCCCcccceeecceeeecCCCCCccccccCCCCCCCchh-----hHHHHHhc-----------CCCCChHHHHHHhhhh
Q 016871 127 ELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLN-----GILAILRN-----------NEMLTWPEKVKFAIGL 190 (381)
Q Consensus 127 ~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~~~ 190 (381)
++|+.....- .....+... .+. .++.... .+..+++. ....++.+.+......
T Consensus 772 qlGl~l~~~~-~~~~~yd~~--~G~--------~V~~e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~~~~~ 840 (1713)
T PLN02976 772 QLGLELTVLN-SDCPLYDVV--TGE--------KVPADLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKR 840 (1713)
T ss_pred hcCCcccccc-CCCceeEcc--CCc--------CCCHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHHHHHHHhh
Confidence 8888753211 111111100 000 0111000 00111110 0011122221110000
Q ss_pred hhhhhcCcch------------h----------hccccccHHHHHHHcCCChHHHHHHHHHHHhhc-C--CCCCCcchHH
Q 016871 191 LPAIIGGQAY------------V----------EAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKAL-N--FINPDELSMQ 245 (381)
Q Consensus 191 ~~~~~~~~~~------------~----------~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~ 245 (381)
.. ....... + ...+..+..+++. .....++....... + +.++++++..
T Consensus 841 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls------~~er~lL~w~~~~lE~~~aa~L~eVSl~ 913 (1713)
T PLN02976 841 RR-MPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLS------PLERRVMNWHFAHLEYGCAALLKEVSLP 913 (1713)
T ss_pred hh-ccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhC------HHHHHHHHHHHHhhcccccCCHHHhhhh
Confidence 00 0000000 0 0000000011110 00111111111111 1 1233444433
Q ss_pred HHHHHHHHhhcccCCCceEEecCCcCccchHHHHHHHHhcCCEEEecceeeEEEEcC--------CCCEEEEEEeCCeEE
Q 016871 246 CILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELND--------DGTVKNFLLTNGNVI 317 (381)
Q Consensus 246 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~--------~~~~~~V~t~~G~~i 317 (381)
.... ...+. ..+.....+.+| +..|+++|++.+ .|++|++|++|.... ++.-+.|+|.+|+++
T Consensus 914 ~~~q--d~~y~-~fgG~~~rIkGG-YqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetf 984 (1713)
T PLN02976 914 YWNQ--DDVYG-GFGGAHCMIKGG-YSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEF 984 (1713)
T ss_pred hhhc--ccccc-cCCCceEEeCCC-HHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEE
Confidence 1110 00011 112223334444 778888887654 599999999999842 112245889999889
Q ss_pred EecEEEEccCHHHHh--ccCCCcccchHHHHHhccCCCCCEEEEEEEEecCCCCC
Q 016871 318 DGDAYVFATPVDILK--LQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNT 370 (381)
Q Consensus 318 ~ad~VI~A~~~~~~~--~Ll~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~ 370 (381)
.||+||+|+|..++. .+.-.+++|.....+++++.+....||++.|++|||..
T Consensus 985 tADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~ 1039 (1713)
T PLN02976 985 LGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDD 1039 (1713)
T ss_pred EeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccC
Confidence 999999999999776 23333346666778899999999999999999999965
No 32
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.82 E-value=4.8e-18 Score=160.24 Aligned_cols=258 Identities=14% Similarity=0.189 Sum_probs=156.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCC-------------------CCCeeecceeeec
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-------------------DGDWYETGLHIFF 115 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~-------------------~g~~~d~G~~~~~ 115 (381)
+..+||||||+|++|+.+|..|++.|++|+++|+++..||+..+.... ..+.+|..++.+.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~ 81 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIM 81 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeee
Confidence 357999999999999999999999999999999999999999875210 1233455555554
Q ss_pred cCCccHHHHHHHhCCCcccceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhh
Q 016871 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAII 195 (381)
Q Consensus 116 ~~~~~~~~l~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (381)
.. ..+.+++...++...+++...+..+... ..+++.. +|. + -.+.+. .....+.++.+.. +++....
T Consensus 82 ~~-G~lv~lL~~s~v~ryleF~~l~g~~v~~-~~g~~~~------vP~--s-~~~~~~-s~ll~l~eKr~l~-kfl~~v~ 148 (443)
T PTZ00363 82 AS-GELVKILLHTDVTRYLEFKVIDGSYVYQ-KEGKIHK------VPA--T-DMEALS-SPLMGFFEKNRCK-NFLQYVS 148 (443)
T ss_pred cC-ChHHHHHhhcCccceeeeEEeceEEEEe-cCCeEEE------CCC--C-HHHHhh-CCCcchhhHHHHH-HHHHHHH
Confidence 32 4467788888888777765555444320 1112111 111 1 111111 1233333333222 1111111
Q ss_pred ---cCcc-hhh--ccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhc--ccCCC-ceEEe
Q 016871 196 ---GGQA-YVE--AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHGS-KMAFL 266 (381)
Q Consensus 196 ---~~~~-~~~--~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~-~~~~~ 266 (381)
...+ ... ..+.+++.+|+++.++.+...+ ++.............+.+....+..+..+.. ..+|. .+.|+
T Consensus 149 ~~~~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp 227 (443)
T PTZ00363 149 NYDENDPETHKGLNLKTMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYP 227 (443)
T ss_pred hhccCChhhhcccCcccCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceee
Confidence 1111 111 2346899999999988876544 2222222211111111223333333332322 22332 33455
Q ss_pred cCCcCccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccC
Q 016871 267 DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATP 327 (381)
Q Consensus 267 ~~~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~ 327 (381)
.+| ...|+++|++.+...|++++++++|++|..++++++++|++.+|++++|++||....
T Consensus 228 ~gG-~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 228 LYG-LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred CCC-HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 444 889999999999999999999999999998666777889999999999999998544
No 33
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.73 E-value=6.6e-17 Score=155.57 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=51.4
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCC
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~ 336 (381)
|.+++.+|++.++++|++|+.+++|++|+. ++. +.|+|++| ++.||+||+|+|+| ...+++
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~--~~v~t~~g-~v~A~~VV~Atga~-s~~l~~ 242 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQP--AVVRTPDG-QVTADKVVLALNAW-MASHFP 242 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCc--eEEEeCCc-EEECCEEEEccccc-ccccCh
Confidence 789999999999999999999999999975 333 35888888 79999999999998 344443
No 34
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.73 E-value=6e-17 Score=145.73 Aligned_cols=93 Identities=19% Similarity=0.250 Sum_probs=80.1
Q ss_pred cCCCceEEecCCcCccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH-HHhccCC
Q 016871 258 KHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (381)
Q Consensus 258 ~~g~~~~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~-~~~~Ll~ 336 (381)
.+...|.|+.|| +..++.++++.+++.|++|.+++.|.+|..+ +|++++|...+|++++++.||+++..| ++.+|+|
T Consensus 251 ~~~g~~~Yp~GG-~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp 328 (561)
T KOG4254|consen 251 GHKGGWGYPRGG-MGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLP 328 (561)
T ss_pred ccCCcccCCCCC-hhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCC
Confidence 345567787777 8999999999999999999999999999984 588999999999999999999988777 6779999
Q ss_pred CcccchHHHHHhccCCCC
Q 016871 337 ENWKEMAYFKRLEKLVGV 354 (381)
Q Consensus 337 ~~~~~~~~~~~~~~l~~~ 354 (381)
..+.|+++ .++++.+.
T Consensus 329 ~e~LPeef--~i~q~d~~ 344 (561)
T KOG4254|consen 329 GEALPEEF--VIQQLDTV 344 (561)
T ss_pred CccCCchh--hhhhcccc
Confidence 99999876 66666554
No 35
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.71 E-value=8.7e-18 Score=141.79 Aligned_cols=204 Identities=22% Similarity=0.287 Sum_probs=135.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCccc-ce
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRL-QW 136 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~-~~ 136 (381)
.+|+|||+|++|++||+.|++.|.+|+|+||..-+||+..+.. ..+..+|.|++++....+.+.++++.+.-+.-+ .|
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR-l~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRR-LDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheec-cCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 3799999999999999999999999999999999999998866 445569999998876655555555443211000 00
Q ss_pred eecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHHHHc
Q 016871 137 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQ 216 (381)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 216 (381)
.+ .+.++-..
T Consensus 81 ~~---------------------------------------------------------------------~~~~~~~~- 90 (331)
T COG3380 81 TP---------------------------------------------------------------------AVWTFTGD- 90 (331)
T ss_pred cc---------------------------------------------------------------------cccccccC-
Confidence 00 00000000
Q ss_pred CCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcCccchHHHHHHHHhcCCEEEecceee
Q 016871 217 GVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQ 296 (381)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V~ 296 (381)
+++. ..++ ..|+...++..|++.|+. ..+|+++++|+
T Consensus 91 ~~~~-----------------~~d~---------------------~pyvg~pgmsalak~LAt-----dL~V~~~~rVt 127 (331)
T COG3380 91 GSPP-----------------RGDE---------------------DPYVGEPGMSALAKFLAT-----DLTVVLETRVT 127 (331)
T ss_pred CCCC-----------------CCCC---------------------CccccCcchHHHHHHHhc-----cchhhhhhhhh
Confidence 0000 0011 001111113344443443 45899999999
Q ss_pred EEEEcCCCCEEEEEEeCC-eEEEecEEEEccCHHHHhccCCC--cccchHHHHHhccCCCCCEEEEEEEEecCCCCCCCc
Q 016871 297 KIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILKLQLPE--NWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDH 373 (381)
Q Consensus 297 ~I~~~~~~~~~~V~t~~G-~~i~ad~VI~A~~~~~~~~Ll~~--~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~ 373 (381)
+|...++++ .+++++| +...+|.||+|.|+..+..||.. ...|..++..+....|.|-+.+.+.|..|+..+..+
T Consensus 128 ~v~~~~~~W--~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~P~~G 205 (331)
T COG3380 128 EVARTDNDW--TLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQPLDRPWPG 205 (331)
T ss_pred hheecCCee--EEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCccCCCCCCC
Confidence 999875554 4888666 45789999999998888888854 335667888899999999888888888887644444
Q ss_pred eeecc
Q 016871 374 LLFSR 378 (381)
Q Consensus 374 ~~~~~ 378 (381)
.|.+
T Consensus 206 -~~vd 209 (331)
T COG3380 206 -NFVD 209 (331)
T ss_pred -cccC
Confidence 3443
No 36
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.67 E-value=1.5e-15 Score=140.48 Aligned_cols=100 Identities=23% Similarity=0.248 Sum_probs=72.1
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeE-EEecEEEEccCHHHHhccCCCcccchHHHHHhc
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV-IDGDAYVFATPVDILKLQLPENWKEMAYFKRLE 349 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~-i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~~~~~ 349 (381)
+..++.+|++.++++|+++++|++|+.|+..++| +..+.|.+|++ ++|+.||.|+|.+ +..|+...-.+..
T Consensus 152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~-Ad~la~~~g~~~~------ 223 (429)
T COG0579 152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLY-ADPLAQMAGIPED------ 223 (429)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchh-HHHHHHHhCCCcc------
Confidence 6688999999999999999999999999997776 34488888865 9999999999988 3333221111110
Q ss_pred cCCCCCEEEEEEEEecCCCCCCCceeeccC
Q 016871 350 KLVGVPVINIHIWFDRKLKNTYDHLLFSRS 379 (381)
Q Consensus 350 ~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~ 379 (381)
..-.|.-..++.++......+.+.+|.-.
T Consensus 224 -~~~~P~~G~y~~~~~~~~~~~~~~Iy~~p 252 (429)
T COG0579 224 -FKIFPVRGEYLVLDNEVKALLRHKIYPVP 252 (429)
T ss_pred -cccCccceEEEEEcccccccccceeecCC
Confidence 22335556777777766666677777544
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.65 E-value=2.2e-15 Score=135.17 Aligned_cols=164 Identities=24% Similarity=0.375 Sum_probs=106.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDRLQ 135 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~~~ 135 (381)
..+||+|||||++||+||..++++|++|+|+|+++.+|-...- .-|+.+-..+.....+++..++-...
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~---------sGgGrCN~Tn~~~~~~~ls~~p~~~~-- 70 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILM---------SGGGRCNFTNSEAPDEFLSRNPGNGH-- 70 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEe---------cCCCCccccccccHHHHHHhCCCcch--
Confidence 4689999999999999999999999999999999987754432 12222222112224555544431110
Q ss_pred eeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHHHH
Q 016871 136 WKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRK 215 (381)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 215 (381)
+ +... +..++...+.+|++.
T Consensus 71 ----------------f---------------l~sa-----------------------------l~~ft~~d~i~~~e~ 90 (408)
T COG2081 71 ----------------F---------------LKSA-----------------------------LARFTPEDFIDWVEG 90 (408)
T ss_pred ----------------H---------------HHHH-----------------------------HHhCCHHHHHHHHHh
Confidence 0 0000 112233455667776
Q ss_pred cCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcCccchHHHHHHHHhcCCEEEeccee
Q 016871 216 QGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRV 295 (381)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V 295 (381)
+|+.-.. ...|. .|+....-..+++.|.+.+++.||+|+++++|
T Consensus 91 ~Gi~~~e----------------------------------~~~Gr--~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v 134 (408)
T COG2081 91 LGIALKE----------------------------------EDLGR--MFPDSDKASPIVDALLKELEALGVTIRTRSRV 134 (408)
T ss_pred cCCeeEE----------------------------------ccCce--ecCCccchHHHHHHHHHHHHHcCcEEEecceE
Confidence 6543210 01111 11111114478999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEEeCCeEEEecEEEEccCH
Q 016871 296 QKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 328 (381)
Q Consensus 296 ~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~ 328 (381)
.+|..++++ ..+.|++|++|+||.+|+|+|.
T Consensus 135 ~~v~~~~~~--f~l~t~~g~~i~~d~lilAtGG 165 (408)
T COG2081 135 SSVEKDDSG--FRLDTSSGETVKCDSLILATGG 165 (408)
T ss_pred EeEEecCce--EEEEcCCCCEEEccEEEEecCC
Confidence 999985433 4599999988999999999983
No 38
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.64 E-value=3.3e-15 Score=139.33 Aligned_cols=63 Identities=29% Similarity=0.429 Sum_probs=51.5
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCC
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~ 336 (381)
+.++++.|.+.++++|++|+++++|++|..+ ++.+.+|.|.+|+ +.||+||+|+|++ ...|++
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~-s~~l~~ 208 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAW-SPQLLP 208 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGG-HHHHHH
T ss_pred ccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEeccccc-ceeeee
Confidence 7799999999999999999999999999984 5556679999995 9999999999998 444443
No 39
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.59 E-value=8e-15 Score=139.34 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=50.8
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
|..++.+|++.+.++|++++.+++|++|...+++.+++|+|.+| ++.+++||+|+++|.
T Consensus 182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 56788889999999999999999999998644556667889888 899999999998883
No 40
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.58 E-value=2e-14 Score=140.74 Aligned_cols=62 Identities=18% Similarity=0.109 Sum_probs=50.7
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe---CC--eEEEecEEEEccCHHHHhcc
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDILKLQ 334 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~---~G--~~i~ad~VI~A~~~~~~~~L 334 (381)
|.+++.+++..+.++|++++++++|++|..+ ++.+++|++. +| .+|.|++||+|+|+| ...|
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w-a~~l 214 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIW-GQHI 214 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChh-HHHH
Confidence 7899999999999999999999999999884 4555566652 23 379999999999999 4444
No 41
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.56 E-value=3.9e-14 Score=132.66 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=49.1
Q ss_pred CccchHHHHHHHHhc-CCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCCC
Q 016871 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 337 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~~ 337 (381)
|.+++.+|.+.+.++ |++|+++++|++|+. + .|+|++| ++.||+||+|+|+| ...|++.
T Consensus 144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~----~v~t~~g-~i~a~~VV~A~G~~-s~~l~~~ 203 (365)
T TIGR03364 144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET--G----TVRTSRG-DVHADQVFVCPGAD-FETLFPE 203 (365)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C----eEEeCCC-cEEeCEEEECCCCC-hhhhCcc
Confidence 778899999998775 999999999999964 2 3788888 68999999999998 4555543
No 42
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.56 E-value=5.9e-15 Score=140.74 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=50.0
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
+..++++|.+.++++|++|+++++|++|+.++ +.++.|+|++| ++.||+||+|+|+|.
T Consensus 200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG-GRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC-CEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 67899999999999999999999999998744 44556878777 899999999999983
No 43
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.56 E-value=8.4e-15 Score=138.01 Aligned_cols=61 Identities=21% Similarity=0.198 Sum_probs=50.2
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccC
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll 335 (381)
|..+++.|.+.+++.|++++.+++|++|..++ +.+ .|.+.+| ++.||+||+|+|+| ...|+
T Consensus 144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~-~~~-~v~~~~~-~i~a~~vV~aaG~~-~~~l~ 204 (380)
T TIGR01377 144 AEKALRALQELAEAHGATVRDGTKVVEIEPTE-LLV-TVKTTKG-SYQANKLVVTAGAW-TSKLL 204 (380)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCeEEEEEecC-CeE-EEEeCCC-EEEeCEEEEecCcc-hHHHh
Confidence 67889999999999999999999999998743 333 4778777 89999999999988 33443
No 44
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.56 E-value=8.1e-15 Score=137.05 Aligned_cols=58 Identities=28% Similarity=0.409 Sum_probs=42.0
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
...+++.|.+.+++.|++|+++++|++|..++ +....|++.+++++.||.||+|+|..
T Consensus 108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~-~~~f~v~~~~~~~~~a~~vILAtGG~ 165 (409)
T PF03486_consen 108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKKE-DGVFGVKTKNGGEYEADAVILATGGK 165 (409)
T ss_dssp HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET-TEEEEEEETTTEEEEESEEEE----S
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC-CceeEeeccCcccccCCEEEEecCCC
Confidence 45788899999999999999999999999844 44567888666699999999999854
No 45
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.55 E-value=3.1e-13 Score=124.86 Aligned_cols=237 Identities=16% Similarity=0.176 Sum_probs=134.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCe-eecceeeeccCCccHHHHHHHhCCCcccce
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDW-YETGLHIFFGAYPNIQNLFGELGINDRLQW 136 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~-~d~G~~~~~~~~~~~~~l~~~~gl~~~~~~ 136 (381)
+||+|||||++|+++|+.|++.|.+|+|+|+++.+||.+.+.. ..+.. .+.|+|++......+.+++.++.--.. +
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~~v~~~~~~~~~~~~--~ 78 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQYVWDYISPFFELNN--Y 78 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcHHHHHHHHhhccccc--e
Confidence 6999999999999999999999999999999999999887755 34444 588999998777777777766521011 1
Q ss_pred eecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHH---
Q 016871 137 KEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWM--- 213 (381)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l--- 213 (381)
......+ ..+.+.. .|-..+.+..+.... ..+ .+.+.+........ .....++++|.
T Consensus 79 ~~~~~~~----~~g~~~~------~P~~~~~i~~l~~~~----~~~---~~~~~l~~~~~~~~---~~~~~~~~e~~d~~ 138 (377)
T TIGR00031 79 QHRVLAL----YNNLDLT------LPFNFNQFRKLLGVK----DAQ---ELQNFFNAQFKYGD---HVPLEELQEIADPD 138 (377)
T ss_pred eEEEEEE----ECCeEEc------cCCCHHHHHHhcccc----hHH---HHHHHHHHHhhccc---CCCCCCHHHHHHHH
Confidence 1111111 1122222 122223333333210 011 11111111000000 11113445554
Q ss_pred HHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCC----CceEEecCCcCccchHHHHHHHHh-cCCE
Q 016871 214 RKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG----SKMAFLDGNPPERLCLPIVEHIQS-LGGE 288 (381)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~l~~~l~~~l~~-~G~~ 288 (381)
.+. +...+.+.++.++....|+.++++++..+.. .+...+....+ ....++..| .+.|.+.+.+ .+++
T Consensus 139 ~~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~-RvP~~~~~d~~yf~d~~q~~P~~G-----yt~~~~~ml~~~~i~ 211 (377)
T TIGR00031 139 IQL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIG-RVPVVLSEDSSYFPDRYQGLPKGG-----YTKLFEKMLDHPLID 211 (377)
T ss_pred HHH-HHHHHHHHhccccCceeeCCChHHCCHHHeE-ecceEecCCCCccccccccccccc-----HHHHHHHHHhcCCCE
Confidence 443 6677888888899999999999999987543 22111111110 111233222 4555555544 3789
Q ss_pred EEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 289 VRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 289 i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
|++|+.+..++. .++. +....+ .+. ++||.+.+...
T Consensus 212 v~l~~~~~~~~~-~~~~---~~~~~~-~~~-~~vi~Tg~id~ 247 (377)
T TIGR00031 212 VKLNCHINLLKD-KDSQ---LHFANK-AIR-KPVIYTGLIDQ 247 (377)
T ss_pred EEeCCccceeec-cccc---eeeccc-ccc-CcEEEecCchH
Confidence 999998888875 2332 333334 333 88999877663
No 46
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.55 E-value=2e-14 Score=125.20 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=56.9
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEE-cCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCCC
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIEL-NDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPE 337 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~-~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~~ 337 (381)
+++-+.++...+.+.|+.++-+..|+.+.. ++.+..+.|.|.+|..+.|+++|+|+|+| +..|||.
T Consensus 152 a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW-i~klL~~ 218 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW-INKLLPT 218 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH-HHhhcCc
Confidence 567788899999999999999999999995 34556678999999779999999999999 6678774
No 47
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.55 E-value=5.4e-14 Score=133.80 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=46.2
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCC-----eEEEecEEEEccCHHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-----NVIDGDAYVFATPVDI 330 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G-----~~i~ad~VI~A~~~~~ 330 (381)
+.+++..|.+.+++.|++|+++++|++|+.++++. .+.+.++ .+++||+||+|+|+|+
T Consensus 196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~--~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGV--VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEE--EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 66888999999999999999999999998744442 2443332 2799999999999983
No 48
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.54 E-value=1.7e-14 Score=135.64 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=52.3
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCC
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~ 336 (381)
|.+++..+.+.+.++|++++++++|++|..++++ +.|+|++| ++.||+||+|+|+| ...|++
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g-~~~a~~vV~A~G~~-~~~l~~ 209 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEADGDG--VTVTTADG-TYEAKKLVVSAGAW-VKDLLP 209 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCe--EEEEeCCC-EEEeeEEEEecCcc-hhhhcc
Confidence 6788889999998999999999999999984443 35888888 89999999999998 555655
No 49
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.53 E-value=1.6e-14 Score=99.66 Aligned_cols=66 Identities=42% Similarity=0.766 Sum_probs=57.7
Q ss_pred EEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeecc--CCccHHHHHHHh
Q 016871 62 IAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFG--AYPNIQNLFGEL 128 (381)
Q Consensus 62 iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~--~~~~~~~l~~~~ 128 (381)
|||||++||++|+.|++.|++|+|+|+++.+||++.+... ++..+|.|++++.. .++++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI-PGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE-TTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE-CCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 8999999999999999999999999999999999998874 67999999999886 457788888764
No 50
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.53 E-value=5.4e-14 Score=132.94 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=49.2
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
+..++++|.+.+++.|++++++++|++|..++++ +.|.+.+| ++.||+||+|+|.|.
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~--~~V~~~~g-~i~ad~vV~A~G~~s 204 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANG--VVVRTTQG-EYEARTLINCAGLMS 204 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCe--EEEEECCC-EEEeCEEEECCCcch
Confidence 6789999999999999999999999999874443 35888887 899999999999883
No 51
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.50 E-value=5.1e-13 Score=126.32 Aligned_cols=87 Identities=20% Similarity=0.139 Sum_probs=64.4
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCe-----EEEecEEEEccCHHHHhccCCCcccchHHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-----VIDGDAYVFATPVDILKLQLPENWKEMAYF 345 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~-----~i~ad~VI~A~~~~~~~~Ll~~~~~~~~~~ 345 (381)
+.+|+..++..+.++|.++.+.++|+++..+ ++ +++|...+.+ +|+|+.||.|+|+| ...++.........
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW-~d~i~~~~~~~~~~- 238 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPW-VDEILEMAGLEQSP- 238 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCcc-HHHHHHhhcccCCC-
Confidence 6799999999999999999999999999984 55 7788876542 58999999999999 55554332111000
Q ss_pred HHhccCCCCCEEEEEEEEec
Q 016871 346 KRLEKLVGVPVINIHIWFDR 365 (381)
Q Consensus 346 ~~~~~l~~~~~~~v~l~~~~ 365 (381)
..+-.+.--+|+++++
T Consensus 239 ----~~~vr~skGsHlVv~~ 254 (532)
T COG0578 239 ----HIGVRPSKGSHLVVDK 254 (532)
T ss_pred ----CccceeccceEEEecc
Confidence 0123356678899988
No 52
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.49 E-value=8.8e-12 Score=116.51 Aligned_cols=255 Identities=18% Similarity=0.253 Sum_probs=149.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeC--------------------CCCCeeecceeee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD--------------------GDGDWYETGLHIF 114 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~--------------------~~g~~~d~G~~~~ 114 (381)
+..+||||+|.|+.-...|..|++.|++|+.+|+++.-||...+... ...+.+|.-+.++
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll 81 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLL 81 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BE
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhh
Confidence 46899999999999999999999999999999999999999887650 1235567767666
Q ss_pred ccCCccHHHHHHHhCCCcccceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhh
Q 016871 115 FGAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAI 194 (381)
Q Consensus 115 ~~~~~~~~~l~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (381)
.. ...+.+++-.-++...+++......+... .+++.. +|.. -.+.+. ...+.+.++.+.. +++...
T Consensus 82 ~a-~g~LV~lLi~S~V~rYLEFk~V~~~~v~~--~~~l~k------VP~s---r~dvf~-s~~lsl~eKR~lm-kFl~~v 147 (438)
T PF00996_consen 82 YA-RGPLVKLLISSGVTRYLEFKAVDGSYVYK--NGKLHK------VPCS---REDVFK-SKLLSLFEKRRLM-KFLKFV 147 (438)
T ss_dssp ET-TSHHHHHHHHCTGGGGSEEEEESEEEEEE--TTEEEE--------SS---HHHHHC--TTS-HHHHHHHH-HHHHHH
T ss_pred hc-cCHHHHHHHhCCcccceEEEEcceeEEEe--CCEEee------CCCC---HHHhhc-CCCccHHHHHHHH-HHHHHH
Confidence 53 34577777778887777776655554332 112211 2211 112222 2445555553332 222222
Q ss_pred hcC---cc-hh--hccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCC--cchHHHHHHHHHHhhc--ccCC-Cce
Q 016871 195 IGG---QA-YV--EAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPD--ELSMQCILIALNRFLQ--EKHG-SKM 263 (381)
Q Consensus 195 ~~~---~~-~~--~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~g-~~~ 263 (381)
... .+ .. .+....++.+++++.++++...+-+...+.-. .+.. .-++...+..+..|+. +.+| +..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~---~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPf 224 (438)
T PF00996_consen 148 ANYEEDDPSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHAIALS---LDDSYLTEPAREGLERIKLYLSSLGRYGKSPF 224 (438)
T ss_dssp HHGCTTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-S---SSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSE
T ss_pred hhcccCCcchhhccccccccHHHHHHhcCCCHHHHHHHHHhhhhc---cCcccccccHHHHHHHHHHHHHHHhccCCCCE
Confidence 211 11 11 13446899999999988876544333222111 1111 1123455566666543 2333 345
Q ss_pred EEecCCcCccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 264 AFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 264 ~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.|+..| ..+|++++.+...-.|+.+.+|++|.+|..++++++.+|.+ +|++++|++||. .+.+
T Consensus 225 LyP~YG-~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~-dpsy 287 (438)
T PF00996_consen 225 LYPLYG-LGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIG-DPSY 287 (438)
T ss_dssp EEETT--TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEE-EGGG
T ss_pred EEEccC-CccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEE-CCcc
Confidence 555555 67999999999999999999999999999877788888875 888999999994 3444
No 53
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.49 E-value=2e-12 Score=120.03 Aligned_cols=262 Identities=19% Similarity=0.270 Sum_probs=143.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC----CCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~ 132 (381)
..++-|||||+++|+||.+|.+. |.+|+|+|+.+..||.+.....+....+-.|++.....+..+.+|++.+--..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~~~~eclwdLls~IPSle 81 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMMEFHYECLWDLLSSIPSLE 81 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccccchhHHHHHHHHhCCCCC
Confidence 46789999999999999999986 56999999999999998765543333333455544555666777777653111
Q ss_pred ccceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHH
Q 016871 133 RLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEW 212 (381)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 212 (381)
.....-.+.++.....+......++.+.-... ......+.+..+.+ .++.+...... ..+...++.+|
T Consensus 82 ~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~-------~~~~~~~~Ls~k~r--~eL~kL~l~~E---~~L~~~~I~d~ 149 (500)
T PF06100_consen 82 DPGKSVLDEIYWFNKEDPNYSKARLIDKRGQI-------VDTDSKFGLSEKDR--MELIKLLLTPE---EDLGDKRIEDW 149 (500)
T ss_pred CCCCcHHHHHHHhccCCCCCcceeeeccCCcc-------ccccCcCCCCHHHH--HHHHHHhcCCH---HHhCcccHHHh
Confidence 10001111111111111111111111000000 00000111111111 11111111111 24456677777
Q ss_pred HHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCC----CceEEecCCcCccchHHHHHHHHhcCCE
Q 016871 213 MRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG----SKMAFLDGNPPERLCLPIVEHIQSLGGE 288 (381)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~l~~~l~~~l~~~G~~ 288 (381)
+.. .|.+..|-.+....+++.+.. |+..+...+.+|+..-.+ ....+...++.+.++..|.+.|+++||+
T Consensus 150 F~~-----~FF~SnFW~~W~T~FAFqpWh-Sa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~ 223 (500)
T PF06100_consen 150 FSE-----SFFESNFWYMWSTMFAFQPWH-SAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVD 223 (500)
T ss_pred cch-----hhhcCchhHhHHHhhccCcch-hHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCE
Confidence 755 344444555556666666654 556666666666554333 2233444566789999999999999999
Q ss_pred EEecceeeEEEEcCC---CCEEEEEE-eCCe--EEE---ecEEEEccCHHHHhccCC
Q 016871 289 VRLNSRVQKIELNDD---GTVKNFLL-TNGN--VID---GDAYVFATPVDILKLQLP 336 (381)
Q Consensus 289 i~~~t~V~~I~~~~~---~~~~~V~t-~~G~--~i~---ad~VI~A~~~~~~~~Ll~ 336 (381)
+++||.|+.|..+.+ ..+..+.. .+|+ +|. -|.|+++.|.-+-..-.+
T Consensus 224 F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t~~s~~G 280 (500)
T PF06100_consen 224 FRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMTEGSTYG 280 (500)
T ss_pred EECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccccccccC
Confidence 999999999997422 22233443 4443 332 477888777664444333
No 54
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.48 E-value=9.3e-13 Score=126.37 Aligned_cols=59 Identities=24% Similarity=0.267 Sum_probs=50.6
Q ss_pred CccchHHHHHHHHh----cC--CEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHH
Q 016871 271 PERLCLPIVEHIQS----LG--GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 331 (381)
Q Consensus 271 ~~~l~~~l~~~l~~----~G--~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~ 331 (381)
+..++.++.+.+++ +| ++|+++|+|++|..++++ .+.|+|.+| ++.||+||+|+|+|+.
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~-~~~V~T~~G-~i~A~~VVvaAG~~S~ 274 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDS-LYKIHTNRG-EIRARFVVVSACGYSL 274 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCC-eEEEEECCC-EEEeCEEEECcChhHH
Confidence 67899999999998 78 789999999999985343 456889888 8999999999999943
No 55
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.45 E-value=2.4e-12 Score=121.65 Aligned_cols=58 Identities=21% Similarity=0.215 Sum_probs=50.2
Q ss_pred CccchHHHHHHHHhcC-CEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHH
Q 016871 271 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 331 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~ 331 (381)
|.+++.++++.+.++| ..+..+++|+.+..+ . ..+.|.|.+| ++.||+||+|+|+|+.
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g-~i~a~~vv~a~G~~~~ 213 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGG-TIEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCc-cEEeCEEEEcCchHHH
Confidence 6789999999999999 577779999999974 4 5667999999 5999999999999933
No 56
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.45 E-value=3.8e-13 Score=135.14 Aligned_cols=62 Identities=19% Similarity=0.317 Sum_probs=51.6
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCC
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~ 336 (381)
|..++.+|.+.+++ |++++++++|++|..++++ + .|.|.+|..+.||+||+|+|++ ...+++
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~-~-~v~t~~g~~~~ad~VV~A~G~~-s~~l~~ 468 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDG-W-QLDFAGGTLASAPVVVLANGHD-AARFAQ 468 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCE-E-EEEECCCcEEECCEEEECCCCC-cccccc
Confidence 67999999999998 9999999999999875444 3 3888888667899999999999 455544
No 57
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.43 E-value=4.1e-12 Score=122.23 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=48.6
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEE---EeCC--eEEEecEEEEccCHHHHhcc
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFL---LTNG--NVIDGDAYVFATPVDILKLQ 334 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~---t~~G--~~i~ad~VI~A~~~~~~~~L 334 (381)
|..++.+|.+.++++|++|+++++|++|..++++.+ .|+ +..| .+++||+||+|+|+| ...|
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~-s~~L 243 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGG-ALPL 243 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcc-hHHH
Confidence 789999999999999999999999999998544422 233 2334 268999999999988 3434
No 58
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.42 E-value=3.7e-12 Score=126.31 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=51.1
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcC-CCCEEEEEE---eCCe--EEEecEEEEccCHHHHhcc
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLL---TNGN--VIDGDAYVFATPVDILKLQ 334 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~-~~~~~~V~t---~~G~--~i~ad~VI~A~~~~~~~~L 334 (381)
|.+++.+|++.++++|++++.+++|++|..++ ++.+++|+. .+|+ ++.||.||+|+|+| ...+
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaw-s~~l 299 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPF-CDEV 299 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHh-HHHH
Confidence 78999999999999999999999999998754 455656654 2343 58999999999999 4444
No 59
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.42 E-value=2e-12 Score=125.69 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=47.2
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeC---Ce--EEEecEEEEccCHHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVDI 330 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~---G~--~i~ad~VI~A~~~~~ 330 (381)
+.+++..+++.+.++|++++++++|++|..+ ++. ++|++.+ |+ +|.|+.||+|+|+|.
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRE-NGL-WHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 6788899999999999999999999999874 332 3465543 43 689999999999993
No 60
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.41 E-value=1.2e-12 Score=127.41 Aligned_cols=61 Identities=13% Similarity=0.057 Sum_probs=49.0
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCC----eEEEecEEEEccCHHHHhcc
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPVDILKLQ 334 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G----~~i~ad~VI~A~~~~~~~~L 334 (381)
+.+++..++..+.++|++++.+++|++|..+ ++ .+.|++.++ .++.|+.||+|+|+| ...+
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~w-a~~l 218 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRARALVNAAGPW-VTDV 218 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEecEEEECCCcc-HHHH
Confidence 6788899999999999999999999999884 33 234666554 259999999999999 4444
No 61
>PRK07121 hypothetical protein; Validated
Probab=99.41 E-value=1.6e-11 Score=119.39 Aligned_cols=60 Identities=23% Similarity=0.359 Sum_probs=48.9
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeC-Ce--EEEe-cEEEEccCHHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDG-DAYVFATPVDI 330 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~-G~--~i~a-d~VI~A~~~~~ 330 (381)
...++..|.+.+++.|++|+++++|++|..++++++++|...+ |+ ++.| +.||+|+|.+.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 3468888999999999999999999999886566787887643 32 5789 99999998764
No 62
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.41 E-value=5.1e-12 Score=120.91 Aligned_cols=63 Identities=17% Similarity=0.112 Sum_probs=47.5
Q ss_pred CccchHHHHHHHHh-cCCEEEecceeeEEEEc-CCCCEEEEE-EeCCe--EEEecEEEEccCHHHHhcc
Q 016871 271 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELN-DDGTVKNFL-LTNGN--VIDGDAYVFATPVDILKLQ 334 (381)
Q Consensus 271 ~~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~-~~~~~~~V~-t~~G~--~i~ad~VI~A~~~~~~~~L 334 (381)
+..+.++|.+.+.+ .|++++++++|++|..+ ++++.+.++ +.+|+ +++||+||+|+|+| ...|
T Consensus 183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGaw-S~~L 250 (497)
T PRK13339 183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGG-AIPL 250 (497)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcc-hHHH
Confidence 56889999999965 48999999999999986 344432222 44553 68999999999999 4444
No 63
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.39 E-value=8e-12 Score=102.92 Aligned_cols=41 Identities=44% Similarity=0.646 Sum_probs=38.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCcee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~ 96 (381)
...||+|+|||++||+|||+|+++|.+|+|+|++-.+||-+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~ 69 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI 69 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcc
Confidence 46799999999999999999999999999999999888755
No 64
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=99.38 E-value=1.9e-12 Score=122.15 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=52.8
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
|+.++++|+..+++.|+.|..|++|++|....++ +.+|.|+.| .|++.+||.|+|.|+
T Consensus 186 P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 186 PAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-ccceeccCc-ceecceEEechhHHH
Confidence 8899999999999999999999999999984444 458999999 899999999999994
No 65
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.38 E-value=6.5e-12 Score=110.83 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=46.4
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeC-----------CeEEEecEEEEccCHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-----------GNVIDGDAYVFATPVD 329 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~-----------G~~i~ad~VI~A~~~~ 329 (381)
+..+...|.+.+++.|++|++++.|+++..++++.+.+|.+.. ..+++|+.||.|+|.+
T Consensus 103 ~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 103 SVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 3467778888889999999999999999875554666666431 2479999999999865
No 66
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.37 E-value=1.6e-12 Score=125.23 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=48.5
Q ss_pred CccchHHHHHHHHhcC-CEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHHHHhcc
Q 016871 271 PERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDILKLQ 334 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~~~~~L 334 (381)
+..++++|.+.+++.| ++|+++++|++|..++++.+ .|.+ .+|+ ++.|++||+|+|+| ...|
T Consensus 182 ~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~-s~~L 249 (494)
T PRK05257 182 FGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGG-ALPL 249 (494)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcc-hHHH
Confidence 6789999999999887 79999999999998555532 2443 3453 69999999999999 4444
No 67
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.37 E-value=7.6e-12 Score=120.07 Aligned_cols=59 Identities=24% Similarity=0.288 Sum_probs=47.7
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe--CCe--EEEecEEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~--~G~--~i~ad~VI~A~~~~~ 330 (381)
..+++.|.+.+++.|++|+++++|++|..++++.+++|... +|+ .+.++.||+|+|.+.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 46888899999999999999999999998656666666553 443 378999999998764
No 68
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.36 E-value=1e-11 Score=120.82 Aligned_cols=56 Identities=23% Similarity=0.202 Sum_probs=45.4
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe--CC--eEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~--~G--~~i~ad~VI~A~~~~ 329 (381)
.++..|.+.+++.|++|+++++|++|.. +++.+++|... +| .++.|+.||+|+|.+
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 5788899999999999999999999987 45666666653 33 268999999999865
No 69
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.35 E-value=2.7e-11 Score=106.55 Aligned_cols=41 Identities=41% Similarity=0.582 Sum_probs=37.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCcee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~ 96 (381)
.++||+|||||++||+||+.|++.|.+|+|+||+..+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 47899999999999999999999999999999999887653
No 70
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.33 E-value=3e-11 Score=116.88 Aligned_cols=58 Identities=28% Similarity=0.320 Sum_probs=47.2
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe--CC--eEEEecEEEEccCHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVD 329 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~--~G--~~i~ad~VI~A~~~~ 329 (381)
...++..|.+.+++.|++|+++++|++|.. +++.+++|.+. +| ..+.|+.||+|+|.+
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 346888899999999999999999999987 45667777763 23 368999999999864
No 71
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=3.3e-11 Score=104.84 Aligned_cols=214 Identities=23% Similarity=0.323 Sum_probs=122.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCC-CCCe-eecceeeeccCCccHHHHHHHhCCCccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG-DGDW-YETGLHIFFGAYPNIQNLFGELGINDRL 134 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~-~g~~-~d~G~~~~~~~~~~~~~l~~~~gl~~~~ 134 (381)
.+|++|||||++|+.+|..|++.|++|+|+||++.+||.+.+.... .|.. .-.|+|++......+++.+..+---...
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e~~~Y 80 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTEFNPY 80 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhhhhhh
Confidence 3799999999999999999999999999999999999999886644 5544 4679999998888888887766311110
Q ss_pred ceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccHHHHHH
Q 016871 135 QWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMR 214 (381)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~ 214 (381)
.... +.... +... .+|-.++.+..++...-. .+.++........ .....+..++++-..
T Consensus 81 ---~hrV-la~~n--g~~~------~lP~nl~ti~ql~G~~~~---p~~a~~~i~~~~~------~~~~~~~q~~ee~ai 139 (374)
T COG0562 81 ---QHRV-LALVN--GQLY------PLPFNLNTINQLFGKNFT---PDEARKFIEEQAA------EIDIAEPQNLEEQAI 139 (374)
T ss_pred ---ccce-eEEEC--Ceee------eccccHHHHHHHhCccCC---HHHHHHHHHHhhc------cccccchhhhhhHHH
Confidence 0010 11000 0000 134445555555542111 1111111111110 111223344444443
Q ss_pred HcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHH------HHhhcccCCCceEEecCCcCccchHHHHHHH-HhcCC
Q 016871 215 KQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIAL------NRFLQEKHGSKMAFLDGNPPERLCLPIVEHI-QSLGG 287 (381)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~l-~~~G~ 287 (381)
.. +...+.+.++..++...|++++.++++......- .+|+.. ...|- |..=-+++.+.+ ...++
T Consensus 140 s~-vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d-------~yQGl-P~~GYT~~~~kMl~hp~I 210 (374)
T COG0562 140 SL-VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSD-------TYQGL-PKDGYTAMFEKMLDHPNI 210 (374)
T ss_pred HH-HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCc-------ccccC-ccccHHHHHHHHhcCCCc
Confidence 33 4456777788888888899999998876432110 011111 11111 222233344443 33478
Q ss_pred EEEecceeeEEEE
Q 016871 288 EVRLNSRVQKIEL 300 (381)
Q Consensus 288 ~i~~~t~V~~I~~ 300 (381)
++++||.-..|..
T Consensus 211 ~V~Lntd~~~~~~ 223 (374)
T COG0562 211 DVRLNTDFFDVKD 223 (374)
T ss_pred eEEecCcHHHHhh
Confidence 9999998777764
No 72
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.28 E-value=1.5e-10 Score=110.49 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe---CCe--EEEecEEEEccCHHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDIL 331 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~---~G~--~i~ad~VI~A~~~~~~ 331 (381)
..++..|.+.++++|++|+++++|+++.. +++++++|... +|+ +|.|+.||+|||.+..
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 46888999999999999999999999999 46688888877 454 5789999999987743
No 73
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.26 E-value=4e-11 Score=99.52 Aligned_cols=41 Identities=44% Similarity=0.601 Sum_probs=34.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCcee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~ 96 (381)
.++||+|||||++||+||+.|++.|++|+|+|++..+||..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~ 56 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGM 56 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccc
Confidence 46899999999999999999999999999999998888754
No 74
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.26 E-value=1.6e-10 Score=113.35 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe-CCe--EEEe-cEEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDG-DAYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~-~G~--~i~a-d~VI~A~~~~~ 330 (381)
..|+..|.+.+++.|++|+++|+|+++.. +++++++|... +|+ .|.| +.||+|||.+.
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~ 278 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFD 278 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCcc
Confidence 57889999999999999999999999986 46778888653 443 3566 47999998764
No 75
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.25 E-value=1.2e-10 Score=110.31 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
..+.+.|.+.+++.|++++++++|++|..++++. .|++.+|+++.||.||.|.|.+
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~g~~~~a~~vV~AdG~~ 168 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRV--RLRLDDGRRLEAALAIAADGAA 168 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeE--EEEECCCCEEEeCEEEEecCCC
Confidence 3567778888888899999999999999754443 4777788789999999999876
No 76
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.23 E-value=8.4e-10 Score=108.94 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeC-Ce--EEEec-EEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGD-AYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~-G~--~i~ad-~VI~A~~~~~ 330 (381)
..++..|.+.+++.|++|+++++|+++..++++++++|...+ |+ .|.|+ .||+|||.+.
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCccc
Confidence 467777888888889999999999999986678888887643 32 47887 4999998764
No 77
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.23 E-value=1.3e-10 Score=110.54 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=48.7
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH-HHhccCC
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~-~~~~Ll~ 336 (381)
.+.+.|.+.+.+.|++++.+++|++|+.++++. .|++.+|++++||.||.|.|.+ .+.+++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v--~v~~~~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDW--LLTLADGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeE--EEEECCCCEEEeCEEEEecCCCchhHHhcC
Confidence 455677788888899999999999999865553 4777888889999999999876 3444554
No 78
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.22 E-value=1.1e-10 Score=110.38 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
..+.+.|.+.+++.|++++++++|++|..+++ .+.|++. ++++.+|.||+|+|.+
T Consensus 105 ~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~--~~~v~~~-~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 105 ADVLDALLNELKELGVEILTNSKVKSIKKDDN--GFGVETS-GGEYEADKVILATGGL 159 (400)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC--eEEEEEC-CcEEEcCEEEECCCCc
Confidence 46788899999999999999999999987433 3457664 5589999999999974
No 79
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.21 E-value=1e-10 Score=111.48 Aligned_cols=55 Identities=22% Similarity=0.377 Sum_probs=42.6
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+-+.|.+.+++.|++|+.+++|++|..+ ++.++.+.+ +|+++.|+.||.|+|.+
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~-~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEA-DGDVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEc-CCcEEECCEEEEEeCCC
Confidence 34455777788889999999999999874 454544544 55589999999999865
No 80
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.21 E-value=9.1e-11 Score=100.43 Aligned_cols=50 Identities=30% Similarity=0.438 Sum_probs=35.8
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
|...+++.++++++++.|++|..++++ +.|++.+|++++||+||+|+|.+
T Consensus 88 l~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 88 LQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeecc
Confidence 555556668889999999999997666 44888888889999999999964
No 81
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.21 E-value=1.7e-10 Score=107.17 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=58.3
Q ss_pred cCCCceEEecCCcC----ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCC--eEEEecEEEEccCHHHH
Q 016871 258 KHGSKMAFLDGNPP----ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVDIL 331 (381)
Q Consensus 258 ~~g~~~~~~~~~~~----~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G--~~i~ad~VI~A~~~~~~ 331 (381)
..|....-+...+| .++.++|.+.++++|++|+.++.|+++..+ ++.+..|.|.++ .++.||+||+|+|+|..
T Consensus 245 ~~g~~v~E~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S 323 (419)
T TIGR03378 245 ATGLTLCELPTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFS 323 (419)
T ss_pred HHCCCEEeCCCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcC
Confidence 44544444444333 488899999999999999999999999984 455666877776 47999999999999954
Q ss_pred hccC
Q 016871 332 KLQL 335 (381)
Q Consensus 332 ~~Ll 335 (381)
..|+
T Consensus 324 ~gL~ 327 (419)
T TIGR03378 324 NGLV 327 (419)
T ss_pred HHHH
Confidence 5553
No 82
>PRK12839 hypothetical protein; Provisional
Probab=99.21 E-value=1.1e-09 Score=107.88 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=47.5
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE--eCCe-EEE-ecEEEEccCHHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL--TNGN-VID-GDAYVFATPVDI 330 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t--~~G~-~i~-ad~VI~A~~~~~ 330 (381)
...++..|.+.+++.|++|+++++|++|..++++++++|.. .+|+ ++. ++.||+|+|.+.
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~ 276 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFP 276 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcc
Confidence 45788899999999999999999999998755677888864 3443 344 489999998774
No 83
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.20 E-value=1.3e-09 Score=107.84 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=47.9
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe--CCe-EEEe-cEEEEccCHHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NGN-VIDG-DAYVFATPVDI 330 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~--~G~-~i~a-d~VI~A~~~~~ 330 (381)
...++..|.+.+++.|++|+++++|++|..+ ++.+++|... ++. +++| +.||+|+|.+.
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 278 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFP 278 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence 4578899999999999999999999999874 5667677553 332 4788 89999998874
No 84
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.20 E-value=4.5e-10 Score=107.12 Aligned_cols=57 Identities=16% Similarity=0.114 Sum_probs=44.3
Q ss_pred ccchHHHHHHHHh-cCCEEEecceeeEEEEcCCCCEEEEE-EeCCe--EEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFL-LTNGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~-t~~G~--~i~ad~VI~A~~~~ 329 (381)
..++..|.+.+++ .|++|+++++|++|..+ ++.+++|. +.+|+ ++.|+.||+|||..
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 4678888888875 49999999999999874 56666754 33554 58999999999875
No 85
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.20 E-value=3.8e-10 Score=106.68 Aligned_cols=63 Identities=21% Similarity=0.253 Sum_probs=47.9
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH-HHhccCC
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~-~~~~Ll~ 336 (381)
.+.+.|++.+++.|++++.++.|+.+..++++.++++ ..++.+++|+.||.|.|+. .+.+.+.
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s~l~~~lg 159 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNSALARKLG 159 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcchHHHHHhC
Confidence 5556688899999999999999999999766765434 3333689999999999855 3444333
No 86
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.20 E-value=4.8e-10 Score=111.61 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe---CCe--EEEecEEEEccCHHH
Q 016871 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (381)
Q Consensus 276 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~---~G~--~i~ad~VI~A~~~~~ 330 (381)
+.|.+.+++.|++|++++.|+++..+ ++.+++|... +|+ .|.|+.||+|||.+.
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 55666777889999999999999874 5677888764 453 589999999998763
No 87
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.19 E-value=1.4e-09 Score=106.57 Aligned_cols=58 Identities=16% Similarity=0.168 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe-------CC-eEEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-------NG-NVIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~-------~G-~~i~ad~VI~A~~~~ 329 (381)
..+...|.+.+++.|+++++++.|+++..++++.+.+|... +| ..+.|+.||+|+|.+
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 36788899988888999999999999988555677777653 22 368999999999876
No 88
>PRK06184 hypothetical protein; Provisional
Probab=99.19 E-value=1.5e-10 Score=112.97 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=45.7
Q ss_pred chHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE-eCCeEEEecEEEEccCHHH-HhccCC
Q 016871 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL-TNGNVIDGDAYVFATPVDI-LKLQLP 336 (381)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t-~~G~~i~ad~VI~A~~~~~-~~~Ll~ 336 (381)
+-+.|.+.+.+.|++|+++++|++|+.++++..+.+.+ .++++++||+||.|.|.+. +.+.+.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 44557777888899999999999999865654322222 4556899999999998773 344443
No 89
>PRK06847 hypothetical protein; Provisional
Probab=99.18 E-value=1.1e-10 Score=109.90 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=45.7
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+.+.|.+.+.+.|++++++++|++|+.++++ +.|.+.+|+++.+|.||.|+|.+
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG~~ 162 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADGLY 162 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcCCC
Confidence 55667888888889999999999999875444 34778888889999999999976
No 90
>PRK06834 hypothetical protein; Provisional
Probab=99.18 E-value=1.7e-10 Score=111.66 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=44.8
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
.+-..|.+.+++.|++|+.+++|++|+.++++. .|++.+|++++||+||.|.|.+.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v--~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGV--DVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeE--EEEECCCCEEEeCEEEEecCCCC
Confidence 344557777788899999999999999865553 36677787899999999998773
No 91
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.17 E-value=3.6e-10 Score=107.11 Aligned_cols=55 Identities=29% Similarity=0.379 Sum_probs=44.2
Q ss_pred cchHHHHHHHHhcC-CEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+.+.|.+.+.+.| +++++++.|++|..++++ + .|++.+|+++.||.||.|.|.+
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~AdG~~ 165 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-V-TVFDQQGNRWTGDALIGCDGVK 165 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-e-EEEEcCCCEEecCEEEECCCcC
Confidence 45667788777664 899999999999875444 3 4777888889999999999876
No 92
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.17 E-value=7.4e-10 Score=108.53 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=45.7
Q ss_pred ccchHHHHHHHHhc-CCEEEecceeeEEEEcC-CCCEEEEEEe-CCe--EEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELND-DGTVKNFLLT-NGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~-~~~~~~V~t~-~G~--~i~ad~VI~A~~~~ 329 (381)
..++..|.+.++++ |++|++++.|+++..++ ++.+++|... +|+ .+.|+.||+|||.+
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 46788888888765 89999999999998753 3677777654 453 37899999999875
No 93
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.17 E-value=7e-10 Score=105.83 Aligned_cols=38 Identities=37% Similarity=0.522 Sum_probs=34.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccC
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~ 92 (381)
+..+||+|||||++|+++|..|++.|++|+|+|+++..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 34689999999999999999999999999999998754
No 94
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.17 E-value=1.5e-09 Score=107.79 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~ 329 (381)
..+...|.+.+++.|++|++++.|+++..++++++.+|.. .+|+ .|.|+.||+|||.+
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 3678889998888999999999999988745677778764 3564 57899999999876
No 95
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.16 E-value=5.8e-10 Score=110.17 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=48.1
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~~ 330 (381)
..++..|.+.+.+.|+++++++.|+++..++++++++|.. .+|+ .|.|+.||+|||...
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 4678888888888899999999999998755678888875 3553 578999999998763
No 96
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.16 E-value=2.3e-09 Score=105.49 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=46.4
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe-CCe--EEEec-EEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGD-AYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~-~G~--~i~ad-~VI~A~~~~~ 330 (381)
..++..|.+.+++.|++|+++++|++|..+ ++++++|... +|+ .+.|+ .||+|||...
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~ 269 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFG 269 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCcc
Confidence 367888999999999999999999999974 6778887764 443 47785 6999997663
No 97
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.16 E-value=2.4e-09 Score=105.88 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeC--Ce-EEEec-EEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN-VIDGD-AYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~--G~-~i~ad-~VI~A~~~~~ 330 (381)
..++..|.+.+++.|++|+++++|+++..+ ++.+++|.+.+ ++ .+.++ .||+|+|.+.
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 468888999999999999999999999874 56677777644 32 47786 6999998763
No 98
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=7.3e-10 Score=109.15 Aligned_cols=58 Identities=16% Similarity=0.014 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe---CCe--EEEecEEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~---~G~--~i~ad~VI~A~~~~~ 330 (381)
..++..|.+.+.+.|+++++++.++++.. +++.+++|... +|+ .+.|+.||+|||.+.
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVT-DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEE-ECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 35778888888888999999999999998 46778888764 332 578999999998764
No 99
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.15 E-value=5.9e-10 Score=105.22 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=45.8
Q ss_pred cchHHHHHHHHhcC-CEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+.+.|.+.+.+.| ++++.+++|++|+.++++ + .|++.+|+++.+|.||.|.|.+
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~-~-~v~~~~g~~~~~~~vi~adG~~ 162 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDH-V-ELTLDDGQQLRARLLVGADGAN 162 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCe-e-EEEECCCCEEEeeEEEEeCCCC
Confidence 56777888888887 999999999999875444 2 4778888889999999999866
No 100
>PRK08244 hypothetical protein; Provisional
Probab=99.15 E-value=3.7e-10 Score=110.01 Aligned_cols=62 Identities=23% Similarity=0.201 Sum_probs=44.7
Q ss_pred chHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCC-eEEEecEEEEccCHH-HHhccC
Q 016871 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVD-ILKLQL 335 (381)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G-~~i~ad~VI~A~~~~-~~~~Ll 335 (381)
+-+.|.+.+++.|++++.+++|++|..++++..+.+...+| ++++||.||.|.|.+ .+.+++
T Consensus 102 le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~l 165 (493)
T PRK08244 102 TEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQA 165 (493)
T ss_pred HHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHhc
Confidence 34456666777899999999999998866654433444456 479999999999866 344444
No 101
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.15 E-value=2.2e-09 Score=105.61 Aligned_cols=43 Identities=30% Similarity=0.467 Sum_probs=39.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
.++||+|||+|.+|++||..+++.|.+|+||||....||.+..
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~~ 48 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTAR 48 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccccc
Confidence 4789999999999999999999999999999999988887654
No 102
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.15 E-value=5e-10 Score=105.85 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=46.9
Q ss_pred ccchHHHHHHHHhcC-CEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH-HHhccC
Q 016871 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~-~~~~Ll 335 (381)
..+.+.|.+.+++.| ++++ ++.|++|..++++ +.|++.+|+++.||.||.|.|.+ .+.+.+
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEeCCCCchHHHhc
Confidence 356677888888887 8998 9999999875444 34888888789999999999976 343444
No 103
>PRK07045 putative monooxygenase; Reviewed
Probab=99.15 E-value=3.2e-10 Score=107.16 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=47.3
Q ss_pred cchHHHHHHHHh-cCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH-HHhc
Q 016871 273 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKL 333 (381)
Q Consensus 273 ~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~-~~~~ 333 (381)
.+.+.|.+.+.+ .|++++++++|++|+.++++.++.|++.+|+++.+|.||-|.|.+ .+.+
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHH
Confidence 344556666654 479999999999999876776667888889899999999999866 3444
No 104
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.15 E-value=1.8e-09 Score=107.00 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=47.9
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~~ 330 (381)
.++..|.+.+++.|++|++++.|+++..++++++++|.. .+|+ .|.|+.||+|||.+.
T Consensus 150 ~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 150 AILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 678889988888999999999999998755577888874 3554 688999999998763
No 105
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.14 E-value=2e-09 Score=104.42 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHh-cCCEEEecceeeEEEEcCCCCEEEEEEeC-C--eEEEecEEEEccCHHH
Q 016871 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTN-G--NVIDGDAYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~t~~-G--~~i~ad~VI~A~~~~~ 330 (381)
..+...|.+.+++ .|++|++++.|++|..+ ++.+.+|.+.+ + .++.|+.||+|+|.+.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4678888888887 58999999999999874 55666666544 3 3689999999999873
No 106
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.14 E-value=9.6e-10 Score=108.81 Aligned_cols=58 Identities=21% Similarity=0.166 Sum_probs=46.7
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~~ 330 (381)
..+...|.+.+++.|+++++++.|++|..+ ++++++|.. .+|+ .+.|+.||+|+|.+.
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 357788888888889999999999999874 567777654 3564 589999999999763
No 107
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.14 E-value=1.7e-10 Score=109.67 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=46.8
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
..+.+.|.+.+.+.|++++.+++|++|+.++++ +.|++.+|+++.||.||.|.|.+
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vI~AdG~~ 166 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLVAADGAR 166 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEEEcCCCC
Confidence 467788888888889999999999999875444 34777888889999999999866
No 108
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.14 E-value=1.1e-09 Score=104.70 Aligned_cols=56 Identities=25% Similarity=0.391 Sum_probs=45.8
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+-+-|.+.++++|++++.++ |+++..++++.+..|++.+|++++||.||-|+|..
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRR 210 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCcc
Confidence 666778888899999998875 88888877888889999999999999999999976
No 109
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.14 E-value=1.2e-09 Score=108.57 Aligned_cols=58 Identities=9% Similarity=0.131 Sum_probs=47.5
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe---CCe--EEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~---~G~--~i~ad~VI~A~~~~ 329 (381)
..++..|.+.+.+.|++|++++.++++..++++.+++|... +|+ .|.|+.||+|||.+
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 249 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGY 249 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCC
Confidence 36788898888888999999999999887546777888752 453 57899999999876
No 110
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.13 E-value=3.6e-10 Score=106.60 Aligned_cols=63 Identities=16% Similarity=0.166 Sum_probs=49.2
Q ss_pred CccchHHHHHHHHh-cCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH-HhccC
Q 016871 271 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQL 335 (381)
Q Consensus 271 ~~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~-~~~Ll 335 (381)
...+.+.|.+.+.+ .|++++.+++|++|..++++. .|++.+|+++.||.||.|.|.+. +.+.+
T Consensus 104 r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~--~v~~~~g~~~~ad~vV~AdG~~S~vr~~l 168 (382)
T TIGR01984 104 LADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYV--RVTLDNGQQLRAKLLIAADGANSKVRELL 168 (382)
T ss_pred cHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeE--EEEECCCCEEEeeEEEEecCCChHHHHHc
Confidence 34677788888887 499999999999998755553 47777887899999999999763 34444
No 111
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.13 E-value=8.6e-10 Score=100.01 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=43.3
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+-+.|.+.+++.|++++.++.|+++..++++..+.+ +.++++++||.||.|+|.+
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIV-RGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEE-cCccEEEEeCEEEECCCcc
Confidence 5667788888888999999999999987555433222 2334589999999999976
No 112
>PRK07190 hypothetical protein; Provisional
Probab=99.12 E-value=6.5e-10 Score=107.47 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH-HhccCC
Q 016871 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI-LKLQLP 336 (381)
Q Consensus 276 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~-~~~Ll~ 336 (381)
..|.+.+++.|++++.+++|++|+.++++.. +.+.+|++++|++||.|.|.+. +.+.++
T Consensus 113 ~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~--v~~~~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 113 KLLDDKLKEAGAAVKRNTSVVNIELNQAGCL--TTLSNGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEcCCeeE--EEECCCcEEEeCEEEECCCCCHHHHHHcC
Confidence 3466677788999999999999998666543 5567787899999999998663 444443
No 113
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.12 E-value=3.9e-09 Score=104.51 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=47.2
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~ 329 (381)
..++..|.+.+.+.|+++++++.|+++..++++.+++|.. .+|+ .+.|+.||+|||..
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 210 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGA 210 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCc
Confidence 3678888888888899999999999998755677778865 2454 57899999999876
No 114
>PRK10015 oxidoreductase; Provisional
Probab=99.12 E-value=5.5e-10 Score=106.43 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=42.2
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+-+.|.+.+++.|++++.+++|++|..+ ++.+.++.+. ++++.||.||.|.|..
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~-~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQAG-DDILEANVVILADGVN 163 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEeC-CeEEECCEEEEccCcc
Confidence 34445777788889999999999999874 4445556554 4489999999999865
No 115
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.12 E-value=8.8e-09 Score=101.89 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=47.4
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCC-e--EEEe-cEEEEccCHHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N--VIDG-DAYVFATPVDI 330 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G-~--~i~a-d~VI~A~~~~~ 330 (381)
...++..|.+.+++.|++|+++++|+++..+ ++.+++|.+.++ + ++.| +.||+|+|.+.
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcc
Confidence 3478899999999999999999999999874 677778876544 2 4676 68999998763
No 116
>PRK07588 hypothetical protein; Provisional
Probab=99.11 E-value=8.6e-10 Score=104.32 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=40.4
Q ss_pred chHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 274 LCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 274 l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
|...|.+.+. .|++|+++++|++|+.++++ + .|++++|+++++|.||-|.|.+
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHRDG-V-RVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECCCe-E-EEEECCCCEEEeCEEEECCCCC
Confidence 3344544443 37999999999999885544 2 4788899889999999999876
No 117
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.11 E-value=1.2e-09 Score=103.32 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=43.8
Q ss_pred cchHHHHHHHHhc-CCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+-+.|.+.+.+. |++++.++.|+++..++++ +.|.+.+|++++||.||.|.|.+
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~AdG~~ 168 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVIGADGAN 168 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEEEeCCCC
Confidence 4455677777766 8999999999999875454 34777788789999999999876
No 118
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.11 E-value=2.5e-09 Score=105.17 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~ 329 (381)
..+...|.+.+++.|++|++++.|+++..++++.+++|.. .+|+ .+.|+.||+|||..
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 3677888888888899999999999998755554777654 3553 58999999999876
No 119
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.10 E-value=8.3e-10 Score=103.87 Aligned_cols=76 Identities=22% Similarity=0.231 Sum_probs=55.2
Q ss_pred cCCCceEEecCCcC----ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCe--EEEecEEEEccCHHHH
Q 016871 258 KHGSKMAFLDGNPP----ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVDIL 331 (381)
Q Consensus 258 ~~g~~~~~~~~~~~----~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~--~i~ad~VI~A~~~~~~ 331 (381)
..|..+..+...++ .++.+.|.+.++++|+++++++.|++++.+ ++.+..+.+.+|+ .+.||.||+|+|....
T Consensus 241 ~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 241 ALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSFFS 319 (422)
T ss_pred HHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCccc
Confidence 34555555443322 367888899998999999999999999975 4445455565553 5899999999998755
Q ss_pred hcc
Q 016871 332 KLQ 334 (381)
Q Consensus 332 ~~L 334 (381)
..|
T Consensus 320 ~GL 322 (422)
T PRK05329 320 GGL 322 (422)
T ss_pred Cce
Confidence 555
No 120
>PRK08013 oxidoreductase; Provisional
Probab=99.10 E-value=6.4e-10 Score=105.43 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=47.0
Q ss_pred cchHHHHHHHHhc-CCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH-HHhccCC
Q 016871 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (381)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~-~~~~Ll~ 336 (381)
.+-..|.+.+.+. |+++++++.|++|+.++++. .|+..+|++++||.||-|-|.+ .+.+.+.
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v--~v~~~~g~~i~a~lvVgADG~~S~vR~~~~ 175 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEA--FLTLKDGSMLTARLVVGADGANSWLRNKAD 175 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeE--EEEEcCCCEEEeeEEEEeCCCCcHHHHHcC
Confidence 4555677777765 79999999999998755553 3667788899999999999866 3444443
No 121
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.09 E-value=5.2e-09 Score=100.96 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
..+.+.|.+.+++.|++++.+ .|+.+.. +++.+++|.+ +|+.+.++.||+|||.+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 468888999999999999876 7999876 4566667776 566899999999999873
No 122
>PLN02815 L-aspartate oxidase
Probab=99.09 E-value=3.2e-09 Score=104.64 Aligned_cols=58 Identities=9% Similarity=0.044 Sum_probs=44.7
Q ss_pred ccchHHHHHHHHhc-CCEEEecceeeEEEEcCCC-C--EEEEEEe---CCe--EEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDG-T--VKNFLLT---NGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~-~--~~~V~t~---~G~--~i~ad~VI~A~~~~ 329 (381)
..+...|.+.+++. |++|++++.++++..++++ . +++|... +|+ .|.|+.||+|||.+
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 221 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA 221 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence 35778888888765 8999999999999875443 2 6777652 453 56899999999876
No 123
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.09 E-value=5.1e-09 Score=104.27 Aligned_cols=41 Identities=24% Similarity=0.234 Sum_probs=37.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCcee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~ 96 (381)
.++||+|||||.+||+||..+++.|.+|+|+||....+|.+
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~s 47 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAHT 47 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCcc
Confidence 46899999999999999999999999999999998766643
No 124
>PLN02463 lycopene beta cyclase
Probab=99.08 E-value=1.9e-09 Score=102.64 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=43.4
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+.+.|.+.+.+.|++++ ++.|++|+.++++ +.|++.+|++++||.||.|+|..
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCC
Confidence 455667777778899996 6799999985444 35888899889999999999876
No 125
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.08 E-value=8.4e-09 Score=100.69 Aligned_cols=42 Identities=36% Similarity=0.558 Sum_probs=38.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
+.++||||||+| +||+||+.+++.|.+|+||||....||.+.
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 357899999999 999999999999999999999998888653
No 126
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.08 E-value=1.5e-09 Score=104.89 Aligned_cols=60 Identities=25% Similarity=0.335 Sum_probs=47.3
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhc
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~ 333 (381)
..+...+.+.++++|++++++++|++|..++++ +.+++.+|+++.+|.||+|+|......
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCcccc
Confidence 356678888899999999999999999874443 236667787899999999998663333
No 127
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=2e-09 Score=106.43 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=46.2
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~ 329 (381)
..++..|.+.+++.|++|++++.|+++.. +++.+.++.. .+|+ .+.|+.||+|||.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 46888899888888999999999999987 4566666653 3564 58999999999886
No 128
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.08 E-value=1.8e-09 Score=103.45 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=40.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
....+|+|||||++||+||.+|.+.|++|+|+|+++.+||....
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 34679999999999999999999999999999999999997754
No 129
>PRK09126 hypothetical protein; Provisional
Probab=99.08 E-value=1.3e-09 Score=103.09 Aligned_cols=60 Identities=25% Similarity=0.278 Sum_probs=43.6
Q ss_pred chHHHHHHHHh-cCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH-HHhccC
Q 016871 274 LCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (381)
Q Consensus 274 l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~-~~~~Ll 335 (381)
+.+.|.+.+.+ .|++|+.+++|++++.++++ +.|++++|+++.||.||.|.|.+ .+.+.+
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEEeCCCCchhhHhc
Confidence 33445555543 58999999999999875444 34777888899999999999865 333344
No 130
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.07 E-value=3.5e-09 Score=101.40 Aligned_cols=59 Identities=27% Similarity=0.280 Sum_probs=48.3
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcC-CCCEEEEEEeCC-eEEEecEEEEccCHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELND-DGTVKNFLLTNG-NVIDGDAYVFATPVD 329 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~-~~~~~~V~t~~G-~~i~ad~VI~A~~~~ 329 (381)
...+++.|.+.+++.|++|+++++|++|..++ ++++++|.+.++ .++.|+.||+|+|.+
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 34688999999999999999999999998753 567777776433 579999999999843
No 131
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.06 E-value=1.1e-09 Score=106.09 Aligned_cols=56 Identities=14% Similarity=0.228 Sum_probs=44.9
Q ss_pred cchHHHHHHHHhc-CCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
.+...+.+.+++. |+++ .++.|++|.. +++.+.+|.+.+|..+.|+.||+|+|.+.
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGTFL 157 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGTFL 157 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence 4556677777765 7888 5678999987 45667789999998999999999999873
No 132
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.06 E-value=1.5e-09 Score=108.28 Aligned_cols=57 Identities=14% Similarity=0.049 Sum_probs=45.5
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~~ 330 (381)
.+...|.+.+.+.|++|+.++.|+++.. +++.+++|.. .+|+ .+.|+.||+|||.+.
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 4667788888889999999999999997 4666667665 3564 467999999998773
No 133
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=99.06 E-value=2.9e-09 Score=93.09 Aligned_cols=79 Identities=25% Similarity=0.271 Sum_probs=60.5
Q ss_pred cCCCceEEecCCcCc----cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeE--EEecEEEEccCHHHH
Q 016871 258 KHGSKMAFLDGNPPE----RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNV--IDGDAYVFATPVDIL 331 (381)
Q Consensus 258 ~~g~~~~~~~~~~~~----~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~--i~ad~VI~A~~~~~~ 331 (381)
..+....-+...+|. ++-+.|.+.+++.|+-++.+-+|.+.+. .++++..|.|.++.. ++||..|+|+|....
T Consensus 240 ~~~~~l~elPtlPPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffs 318 (421)
T COG3075 240 VLGLALFELPTLPPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFS 318 (421)
T ss_pred HhCCceeecCCCCcchhhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeecccccc
Confidence 344444444444344 6667788888889999999999999998 466677899988753 789999999999977
Q ss_pred hccCCC
Q 016871 332 KLQLPE 337 (381)
Q Consensus 332 ~~Ll~~ 337 (381)
+.|+.+
T Consensus 319 kGLvae 324 (421)
T COG3075 319 KGLVAE 324 (421)
T ss_pred ccchhh
Confidence 777654
No 134
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.06 E-value=2.7e-09 Score=100.68 Aligned_cols=63 Identities=22% Similarity=0.356 Sum_probs=49.6
Q ss_pred ccchHHHHHHHHhcC-CEEEecceeeEEEEcCCCCEEEEEEe-CCeEEEecEEEEccCHH-HHhccCC
Q 016871 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVD-ILKLQLP 336 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~t~-~G~~i~ad~VI~A~~~~-~~~~Ll~ 336 (381)
..+.+.|.+.+.+.+ ++++.+++|+.++.++++.. ++.. +|++++||.||-|=|.+ .+.+.+.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~--v~l~~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT--VTLSFDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE--EEEcCCCcEEecCEEEECCCCchHHHHhcC
Confidence 366777888888776 89999999999998655543 6556 89899999999999866 4444555
No 135
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.06 E-value=6.9e-09 Score=102.70 Aligned_cols=41 Identities=32% Similarity=0.341 Sum_probs=37.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
.+||+|||||.+||+||..+++.|.+|+|+||....+|.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s~ 43 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHSV 43 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCccc
Confidence 46999999999999999999999999999999988777543
No 136
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.06 E-value=4.8e-09 Score=103.31 Aligned_cols=42 Identities=48% Similarity=0.718 Sum_probs=38.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc--cCCceee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD--VLGGKIA 97 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~--~~gg~~~ 97 (381)
.++||||||+|.+||+||..+++.|.+|+||||.+ ..||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999999 7788664
No 137
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=5.7e-09 Score=103.33 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHh-cCCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~ 329 (381)
..++..|.+.+.+ .|++++.++.|+++..+ ++.+++|.. .+|+ .+.|+.||+|||..
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 3577888888876 58999999999999874 566666653 3564 57999999999877
No 138
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.05 E-value=1.8e-10 Score=109.76 Aligned_cols=40 Identities=43% Similarity=0.608 Sum_probs=33.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
||||||||++|++||..+++.|.+|+|+|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999997644
No 139
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.05 E-value=3.5e-09 Score=104.81 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCC---CCEEEEEE---eCCe--EEEecEEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD---GTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~---~~~~~V~t---~~G~--~i~ad~VI~A~~~~~ 330 (381)
..+...|.+.+++.|++|++++.|+++..+++ +++.+|.. .+|+ .|.|+.||+|||.+.
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 46788899888888999999999999987542 67777765 3554 578999999998763
No 140
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.04 E-value=3.5e-09 Score=104.23 Aligned_cols=63 Identities=30% Similarity=0.412 Sum_probs=48.0
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~ 133 (381)
...+||+|||||++||++|..|++.|++|+|+|++......... . ...++..++++++|+...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra------------~----~l~~~~~~~L~~lGl~~~ 70 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRA------------V----GIDDEALRVLQAIGLADE 70 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCce------------e----eeCHHHHHHHHHcCChhH
Confidence 46789999999999999999999999999999998765422111 0 113456778888887643
No 141
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.04 E-value=2e-09 Score=106.19 Aligned_cols=64 Identities=31% Similarity=0.373 Sum_probs=47.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcc
Q 016871 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (381)
Q Consensus 54 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~ 133 (381)
.+..+||+|||||++||++|..|++.|++|+|+|+++........ . ...+...++++++|+...
T Consensus 20 ~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra-------------~---~l~~~~~~~l~~lGl~~~ 83 (547)
T PRK08132 20 DPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRA-------------I---CFAKRSLEIFDRLGCGER 83 (547)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeE-------------E---EEcHHHHHHHHHcCCcHH
Confidence 346789999999999999999999999999999998754321111 0 113456778888887643
No 142
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.04 E-value=1.2e-09 Score=103.28 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=43.1
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+.+.|.+.+.+.+...+++++|++|+.++++. .|++++|++++||.||.|.|.+
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~--~v~~~~g~~~~a~~vI~AdG~~ 166 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPREDEV--TVTLADGTTLSARLVVGADGRN 166 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeE--EEEECCCCEEEEeEEEEecCCC
Confidence 556678888777654448899999998755553 3778888889999999999876
No 143
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.04 E-value=2.1e-09 Score=97.81 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=38.3
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
+.+.+++.|+++++ +.|++|+.+++. +.|.+.+|+++.+|+||+|+|..
T Consensus 63 l~~~~~~~gv~~~~-~~v~~v~~~~~~--~~v~~~~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 63 MKEQAVKFGAEIIY-EEVIKVDLSDRP--FKVKTGDGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHcCCeEEE-EEEEEEEecCCe--eEEEeCCCCEEEeCEEEECCCCC
Confidence 44555667899998 899999874333 34777777789999999999976
No 144
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.04 E-value=4.8e-09 Score=111.25 Aligned_cols=43 Identities=44% Similarity=0.645 Sum_probs=39.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
..++||||||+|.+|++||..+++.|.+|+|+||....||.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 4578999999999999999999999999999999999998764
No 145
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.03 E-value=5.6e-09 Score=101.68 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeC--Ce--EEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN--GN--VIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~--G~--~i~ad~VI~A~~~~ 329 (381)
..+.+.|.+.++ .|++|++++.|+++.. +++.+++|.+.+ |+ .+.|+.||+|||.+
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~ 189 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGC 189 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCC
Confidence 357777877775 5899999999999987 456677777643 32 58899999999876
No 146
>PRK07236 hypothetical protein; Provisional
Probab=99.03 E-value=3.3e-09 Score=100.18 Aligned_cols=62 Identities=24% Similarity=0.288 Sum_probs=46.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~ 132 (381)
...||+|||||++||++|..|++.|++|+|+|+++..... .|.-+. ..++..++++++|+..
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-------------~g~gi~--l~~~~~~~l~~lg~~~ 66 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDG-------------RGAGIV--LQPELLRALAEAGVAL 66 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCC-------------CCceeE--eCHHHHHHHHHcCCCc
Confidence 4589999999999999999999999999999998642110 111111 1456788889998863
No 147
>PRK12831 putative oxidoreductase; Provisional
Probab=99.03 E-value=1.1e-08 Score=98.52 Aligned_cols=44 Identities=36% Similarity=0.454 Sum_probs=40.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 54 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
.....||+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 34678999999999999999999999999999999999998774
No 148
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.02 E-value=4.4e-09 Score=104.21 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=43.4
Q ss_pred cchHHHHHHHHh----cCCEEEecceeeEEEEcCCCCEEEEEEe---CCe--EEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQS----LGGEVRLNSRVQKIELNDDGTVKNFLLT---NGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~----~G~~i~~~t~V~~I~~~~~~~~~~V~t~---~G~--~i~ad~VI~A~~~~ 329 (381)
.++..|.+.+++ .|++|++++.|+++..++++++++|... +|+ .+.|+.||+|||.+
T Consensus 130 ~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 130 QLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred HHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 455566655544 3799999999999987656678888864 353 57899999999875
No 149
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.02 E-value=1.1e-09 Score=103.34 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=41.9
Q ss_pred hHHHHHHHHhc-CCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 275 CLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 275 ~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
-..|.+.+.+. |++++.++.|++++.++++. .|++.+|++++||.||.|.|.+
T Consensus 113 ~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~--~v~~~~g~~~~~~lvIgADG~~ 166 (384)
T PRK08849 113 QLGLWQQFAQYPNLTLMCPEKLADLEFSAEGN--RVTLESGAEIEAKWVIGADGAN 166 (384)
T ss_pred HHHHHHHHHhCCCeEEECCCceeEEEEcCCeE--EEEECCCCEEEeeEEEEecCCC
Confidence 34465665553 69999999999999865553 4778888899999999999876
No 150
>PLN02661 Putative thiazole synthesis
Probab=99.02 E-value=6.2e-09 Score=94.32 Aligned_cols=41 Identities=39% Similarity=0.420 Sum_probs=36.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHC-CCceEEEeccccCCce
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLGGK 95 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~~gg~ 95 (381)
..++||+|||||++|++||+.|++. |++|+|+|++..+||.
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG 131 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence 4578999999999999999999986 8999999998887763
No 151
>PRK06126 hypothetical protein; Provisional
Probab=99.02 E-value=5e-09 Score=103.40 Aligned_cols=63 Identities=27% Similarity=0.340 Sum_probs=46.7
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~ 133 (381)
+..+||+|||||++||++|..|+++|++|+|+|+.+...-.. .+. ...+...++++++|+...
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~-------------ra~---~l~~r~~e~L~~lGl~~~ 67 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNP-------------KAN---TTSARSMEHFRRLGIADE 67 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCC-------------ccc---cCCHHHHHHHHhcChHHH
Confidence 457899999999999999999999999999999876322100 000 124556778888887654
No 152
>PRK06185 hypothetical protein; Provisional
Probab=99.02 E-value=5.8e-09 Score=99.23 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=44.4
Q ss_pred cchHHHHHHHHhc-CCEEEecceeeEEEEcCCCCEEEEE--EeCCe-EEEecEEEEccCHHH-HhccCC
Q 016871 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFL--LTNGN-VIDGDAYVFATPVDI-LKLQLP 336 (381)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~--t~~G~-~i~ad~VI~A~~~~~-~~~Ll~ 336 (381)
.+.+.|.+.+.+. |++++.++.|+++..++ +.+++|. +.+|+ +++||.||.|.|.+. +.+.++
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~-~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG-GRVTGVRARTPDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC-CEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 4556677777664 89999999999998854 4444444 34563 799999999998763 444443
No 153
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.01 E-value=2.4e-09 Score=101.50 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=41.1
Q ss_pred hHHHHHHHHh-cCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 275 CLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 275 ~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
-+.|.+.+.+ .|++++++++|++|..++++. .|++.+|.++.+|.||.|.|.+
T Consensus 115 ~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~--~v~~~~g~~~~a~~vI~AdG~~ 168 (395)
T PRK05732 115 GQRLFALLDKAPGVTLHCPARVANVERTQGSV--RVTLDDGETLTGRLLVAADGSH 168 (395)
T ss_pred HHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeE--EEEECCCCEEEeCEEEEecCCC
Confidence 3446666655 479999999999998754443 4778888789999999999876
No 154
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.00 E-value=5.9e-09 Score=100.07 Aligned_cols=41 Identities=34% Similarity=0.501 Sum_probs=37.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc-CCceee
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV-LGGKIA 97 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~-~gg~~~ 97 (381)
.+||+|||||++|++||..|++.|++|+|+|+.+. .||.|-
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 58999999999999999999999999999999864 688653
No 155
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.00 E-value=6e-09 Score=101.58 Aligned_cols=58 Identities=19% Similarity=0.269 Sum_probs=46.1
Q ss_pred CccchHHHHHHHHhc-CCEEEecceeeEEEEcCCCCEEEEEEeC-Ce--EEEecEEEEccCHH
Q 016871 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTN-GN--VIDGDAYVFATPVD 329 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~t~~-G~--~i~ad~VI~A~~~~ 329 (381)
...++..|.+.+++. |++++.++.|+++..+ ++.+++|.+.+ ++ ++.|+.||+|||..
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 346888898888775 8999999999999863 56677777643 32 58999999999876
No 156
>PLN02697 lycopene epsilon cyclase
Probab=99.00 E-value=5.6e-09 Score=101.05 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=44.2
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
.|.+.|.+.+.+.|+++ .++.|++|..++++. ..+.+.+|+++.|+.||.|+|.+.
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~-~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGL-RLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcE-EEEEEcCCcEEECCEEEECCCcCh
Confidence 55667888888889998 788999998754543 235567777899999999999984
No 157
>PRK08275 putative oxidoreductase; Provisional
Probab=99.00 E-value=1.3e-08 Score=100.32 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=46.7
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~ 329 (381)
.+...|.+.+++.|++|++++.|++|..++++.+.+|.. .+|+ .+.|+.||+|||..
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCc
Confidence 577888888888999999999999998854666777764 3564 47899999999876
No 158
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.99 E-value=7.1e-09 Score=98.09 Aligned_cols=61 Identities=33% Similarity=0.467 Sum_probs=46.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccC--CceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL--GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~--gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~ 133 (381)
..||+|||||++|+++|..|++.|++|+|+|+++.. .+.. ++..+ .++..++++++|+...
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-------------~a~~l---~~~~~~~l~~lGl~~~ 64 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRI-------------RAGVL---EQGTVDLLREAGVGER 64 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccccccc-------------ceeEE---CHhHHHHHHHcCChHH
Confidence 479999999999999999999999999999998742 1111 11111 3566788899997644
No 159
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.99 E-value=3.8e-09 Score=102.17 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=45.7
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCC---eEEEecEEEEccCHHHHhcc
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPVDILKLQ 334 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G---~~i~ad~VI~A~~~~~~~~L 334 (381)
.+.+.+.+.++++|+++++++.|++|+.++++ +.+.+.+| +++.+|.||+|+|......+
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 214 EISKLAERALKKRGIKIKTGAKAKKVEQTDDG--VTVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCE--EEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 56677888888999999999999999874333 33666555 57999999999986643333
No 160
>PRK06116 glutathione reductase; Validated
Probab=98.98 E-value=2.2e-09 Score=103.35 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=45.9
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+...+.+.++++|+++++++.|++|+.++++. +.|.+.+|+++.+|.||+|+|..
T Consensus 209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~-~~v~~~~g~~i~~D~Vv~a~G~~ 264 (450)
T PRK06116 209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGS-LTLTLEDGETLTVDCLIWAIGRE 264 (450)
T ss_pred HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCce-EEEEEcCCcEEEeCEEEEeeCCC
Confidence 566778888899999999999999998754543 34777788889999999999755
No 161
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.98 E-value=6.5e-09 Score=100.55 Aligned_cols=56 Identities=20% Similarity=0.338 Sum_probs=44.3
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCC--eEEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G--~~i~ad~VI~A~~~~ 329 (381)
..+...+.+.+++.|+++++++.|++|+.++++ + .+.+.+| +++.+|.||+|+|..
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~i~~D~vi~a~G~~ 268 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQ-V-VYENKGGETETLTGEKVLVAVGRK 268 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCE-E-EEEEeCCcEEEEEeCEEEEecCCc
Confidence 356677888888999999999999999874333 3 3666667 479999999999865
No 162
>PRK11445 putative oxidoreductase; Provisional
Probab=98.98 E-value=3.5e-08 Score=91.85 Aligned_cols=61 Identities=28% Similarity=0.353 Sum_probs=43.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCC
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~ 131 (381)
+||+|||||++|+++|..|++. ++|+|+|+++..+-.... . ..|. ...++..+.++++|+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~-~-------~~g~----~l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFS-K-------PCGG----LLAPDAQKSFAKDGLT 62 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcccccccc-C-------cCcC----ccCHHHHHHHHHcCCC
Confidence 6999999999999999999999 999999998754210000 0 0111 1245677888888875
No 163
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.98 E-value=9.6e-09 Score=83.81 Aligned_cols=50 Identities=30% Similarity=0.426 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCEEE-ecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCH
Q 016871 276 LPIVEHIQSLGGEVR-LNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPV 328 (381)
Q Consensus 276 ~~l~~~l~~~G~~i~-~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~ 328 (381)
+.+.+.+ ..|++|. .+.+|++|...+++. .|.+.+|..+.+|+||+|+|.
T Consensus 105 ~~~~~~~-~~~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 105 DRLLARL-PAGITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHhh-cCCcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence 3344444 3455443 577999999976664 488899989999999999984
No 164
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.98 E-value=1.4e-08 Score=100.29 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=43.8
Q ss_pred cchHHHHHHHHhc-CCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~ 329 (381)
.+...|.+.+.+. |+++++++.|+++..+ ++.+.+|.. .+|+ .+.|+.||+|+|.+
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 195 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGA 195 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCCC
Confidence 5677788777665 7999999999999874 566666643 4563 68999999999876
No 165
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.98 E-value=7e-09 Score=100.28 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=42.1
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe--CC--eEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT--NG--NVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~--~G--~~i~ad~VI~A~~~~ 329 (381)
.+...+.+.++++|++|+++++|++|+.+ ++.+ .+.+. +| +++.+|.||+|+|..
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~ 272 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFA 272 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcc
Confidence 46677888888999999999999999863 3322 24333 56 369999999999865
No 166
>PRK06370 mercuric reductase; Validated
Probab=98.97 E-value=3.4e-09 Score=102.42 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=42.4
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe-CCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~-~G~~i~ad~VI~A~~~~ 329 (381)
.+.+.+.+.++++|+++++++.|++|+.++++..+.+... +++++.+|.||+|+|..
T Consensus 213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~ 270 (463)
T PRK06370 213 DVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRV 270 (463)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCC
Confidence 4566778888889999999999999987544433223322 34579999999999865
No 167
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.97 E-value=1.8e-08 Score=100.02 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=44.6
Q ss_pred ccchHHHHHHHHhcC-CEEEecceeeEEEEcCCCCEEEEE---EeCCe--EEEecEEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~---t~~G~--~i~ad~VI~A~~~~~ 330 (381)
..+...|.+.++++| +++++++.|+++..+ ++.+++|. +.+|+ ++.|+.||+|||.+.
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 356777888887775 999999999999864 45666664 23553 689999999999773
No 168
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.97 E-value=1.1e-08 Score=98.40 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=46.6
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCC-eEEEecEEEEccCHHHHhc
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDILKL 333 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G-~~i~ad~VI~A~~~~~~~~ 333 (381)
..+.+.+.+.++++|+++++++.|++|..++++. +.|++.+| +++.+|.||+|+|......
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 3566778888889999999999999998743442 34666677 5799999999998663333
No 169
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.97 E-value=3.1e-10 Score=105.62 Aligned_cols=64 Identities=28% Similarity=0.338 Sum_probs=45.7
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe-CCe--EEEecEEEEccCHH-HHhccCC
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-NGN--VIDGDAYVFATPVD-ILKLQLP 336 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~-~G~--~i~ad~VI~A~~~~-~~~~Ll~ 336 (381)
.+-+.|.+.+++.|++|+.++.|++++.+.++..+.+... +|+ +++||.||-|-|.+ .+.+.+.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 4566788888889999999999999998666544333333 342 68999999999876 3444444
No 170
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.97 E-value=3.5e-09 Score=103.46 Aligned_cols=52 Identities=27% Similarity=0.321 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 276 LPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 276 ~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
..+.+.+++.|++++++++|++|..+++. ..|++.+|+++.+|++|+|+|+.
T Consensus 271 ~~l~~~l~~~gv~i~~~~~V~~I~~~~~~--~~v~~~~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 271 ANLEEHIKQYPIDLMENQRAKKIETEDGL--IVVTLESGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHhCCeEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCC
Confidence 34566667778999999999999874333 34777788789999999999976
No 171
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=98.96 E-value=2.4e-09 Score=95.14 Aligned_cols=255 Identities=18% Similarity=0.252 Sum_probs=132.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHC----CCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhC-
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELG- 129 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~g- 129 (381)
-.+..+-|||+|++||++|..|.+. |.++.++|.-+..||.......+...++-.|++.+...+..++++++.+-
T Consensus 20 VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRemEnhfEc~WDlfrsIPS 99 (587)
T COG4716 20 VDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGREMENHFECLWDLFRSIPS 99 (587)
T ss_pred cccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHHHHHHHHHHHHHHhcCcc
Confidence 3557799999999999999999986 67999999999999987543333333444566555545556777766542
Q ss_pred CCcccceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhcCcchhhccccccH
Q 016871 130 INDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIGGQAYVEAQDGLTV 209 (381)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 209 (381)
++.. ...-.+.++.....+......+..+.- -.++... ....+..+.+. .+...+... -+.++..++
T Consensus 100 Lei~-naSvldEfy~~d~~dPn~s~cRli~k~------g~rv~dd-g~~tl~~~~~~--ei~kL~~t~---EE~L~~~tI 166 (587)
T COG4716 100 LEIP-NASVLDEFYWLDKDDPNSSNCRLIHKR------GRRVDDD-GSFTLNNKARK--EIIKLLMTP---EEKLDDLTI 166 (587)
T ss_pred ccCC-CcHHHHHHHhccCCCCCccceeeeecc------ccccccc-cccccChhhHH--HHHHHHcCc---HHhcCCccH
Confidence 1111 001111222222222222222111100 0000000 11111111000 011111111 134567888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCC----CceEEecCCcCccchHHHHHHHHhc
Q 016871 210 QEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHG----SKMAFLDGNPPERLCLPIVEHIQSL 285 (381)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~l~~~l~~~l~~~ 285 (381)
.+|+... |.+..|..+...++++.... ++..+...+.+++..-.| ....+...++.+.++..|...|+++
T Consensus 167 ~d~Fse~-----FF~sNFW~yW~tmFAFekWh-Sa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlPli~yL~~H 240 (587)
T COG4716 167 EDWFSED-----FFKSNFWYYWQTMFAFEKWH-SAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLPLITYLKSH 240 (587)
T ss_pred HHhhhHh-----hhhhhHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHHHHHHHHHc
Confidence 8888763 33333433434444343332 222233333333332222 2234445566789999999999999
Q ss_pred CCEEEecceeeEEEEcC-CCCEE--EE-EEeCCeEEE---ecEEEEccCH
Q 016871 286 GGEVRLNSRVQKIELND-DGTVK--NF-LLTNGNVID---GDAYVFATPV 328 (381)
Q Consensus 286 G~~i~~~t~V~~I~~~~-~~~~~--~V-~t~~G~~i~---ad~VI~A~~~ 328 (381)
||++.+++.|+.|+.+. .|+.+ .+ ...++++|+ -|-|+++-+.
T Consensus 241 ~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgs 290 (587)
T COG4716 241 GVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGS 290 (587)
T ss_pred CCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEecce
Confidence 99999999999999743 23211 12 245555553 3556665543
No 172
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.96 E-value=1.2e-08 Score=96.96 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=45.1
Q ss_pred chHHHHHHHHhc-CCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH-HHhccCC
Q 016871 274 LCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQLP 336 (381)
Q Consensus 274 l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~-~~~~Ll~ 336 (381)
+...|.+.+.+. |++++.+++|++|..++++. .|++.+|++++||.||-|.|.+ .+.+.+.
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~--~v~~~~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEA--WLTLDNGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeE--EEEECCCCEEEeCEEEEeCCCCChhHHHcC
Confidence 334566666554 79999999999998754543 4778888899999999999865 3444443
No 173
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.96 E-value=2.1e-08 Score=98.99 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=44.9
Q ss_pred ccchHHHHHHHHhc-CCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~ 329 (381)
..+...|.+.+.+. |++++.++.|+++..+ ++.+.+|.. .+|+ .+.|+.||+|||.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGGA 194 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCC
Confidence 36788888877664 7999999999999874 667777654 3563 58899999999876
No 174
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.96 E-value=2.3e-09 Score=100.73 Aligned_cols=60 Identities=8% Similarity=0.067 Sum_probs=45.7
Q ss_pred cchHHHHHHHHhcC-CEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH-HHhccC
Q 016871 273 RLCLPIVEHIQSLG-GEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (381)
Q Consensus 273 ~l~~~l~~~l~~~G-~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~-~~~~Ll 335 (381)
.|-+.|.+.+.+.+ +++++++.|++|..++++. .|.+.++ +++||.||-|-|.+ .+.+.+
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v--~v~~~~~-~~~adlvIgADG~~S~vR~~l 166 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYS--IIKFDDK-QIKCNLLIICDGANSKVRSHY 166 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeE--EEEEcCC-EEeeCEEEEeCCCCchhHHhc
Confidence 56667888877765 8999999999998855553 3777677 89999999999866 343444
No 175
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.96 E-value=1.5e-08 Score=93.36 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=42.9
Q ss_pred cchHHHHHHHHh-cCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+...+.+.+++ .+++| .++.|++|.. +++.+.+|.|.+|+.+.+|.||+|||.+
T Consensus 96 ~y~~~~~~~l~~~~nl~i-~~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTI-IQGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp HHHHHHHHHHHTSTTEEE-EES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred HHHHHHHHHHhcCCCeEE-EEcccceEEe-cCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 344456666666 36788 4789999998 5688899999999999999999999996
No 176
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.96 E-value=4.2e-09 Score=103.01 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=42.4
Q ss_pred hHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 275 ~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
...+.+.+++.|+++++++.|++|...++. +.|.+.+|+++.||.||+|+|..
T Consensus 269 ~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~--~~V~~~~g~~i~a~~vViAtG~~ 321 (517)
T PRK15317 269 AAALEEHVKEYDVDIMNLQRASKLEPAAGL--IEVELANGAVLKAKTVILATGAR 321 (517)
T ss_pred HHHHHHHHHHCCCEEEcCCEEEEEEecCCe--EEEEECCCCEEEcCEEEECCCCC
Confidence 344666777788999999999999884433 34777888789999999999985
No 177
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.95 E-value=3.2e-09 Score=101.24 Aligned_cols=55 Identities=18% Similarity=0.272 Sum_probs=41.4
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 331 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~ 331 (381)
.|.+.|.+.+. +..++++++|++|..++++ +.|++.+|+++.+|.||.|.|.+..
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccHH
Confidence 44555655553 3568899999999985555 3477788888999999999998743
No 178
>PRK06753 hypothetical protein; Provisional
Probab=98.95 E-value=1.2e-08 Score=95.88 Aligned_cols=36 Identities=33% Similarity=0.666 Sum_probs=33.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
+||+|||||++|+++|..|++.|++|+|+|+++...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 489999999999999999999999999999988653
No 179
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.95 E-value=6.5e-09 Score=107.31 Aligned_cols=44 Identities=30% Similarity=0.387 Sum_probs=40.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
+...+|+|||||++||+||+.|++.|++|+|+|+.+.+||....
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEc
Confidence 45789999999999999999999999999999999999998653
No 180
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.95 E-value=1e-08 Score=93.19 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=43.3
Q ss_pred HHHHHHHHhc-CCEEEecceeeEEEEc-CCCCEEEEEEeC--Ce----EEEecEEEEccCHHHHhccCCC
Q 016871 276 LPIVEHIQSL-GGEVRLNSRVQKIELN-DDGTVKNFLLTN--GN----VIDGDAYVFATPVDILKLQLPE 337 (381)
Q Consensus 276 ~~l~~~l~~~-G~~i~~~t~V~~I~~~-~~~~~~~V~t~~--G~----~i~ad~VI~A~~~~~~~~Ll~~ 337 (381)
...+..+.++ |++|++++.|++|..+ +++++++|+..+ +. ++.++.||+|+|+--..+||-.
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~ 265 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLR 265 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHH
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcc
Confidence 3444444444 8999999999999763 456677777643 33 4678999999998767776643
No 181
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.95 E-value=8.4e-09 Score=98.38 Aligned_cols=45 Identities=36% Similarity=0.472 Sum_probs=40.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCc-eEEEeccccCCceeee
Q 016871 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARDVLGGKIAA 98 (381)
Q Consensus 54 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~~~gg~~~~ 98 (381)
....+||+|||||++|+++|++|.+.|.. ++|+||++.+||.-..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~ 50 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY 50 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh
Confidence 35678999999999999999999999988 9999999999987544
No 182
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.95 E-value=2.6e-09 Score=91.63 Aligned_cols=49 Identities=29% Similarity=0.514 Sum_probs=41.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCC------CceEEEeccccCCceeeeeeCCCCCee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAG------HKPLLLEARDVLGGKIAAWKDGDGDWY 107 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g------~~v~~~e~~~~~gg~~~~~~~~~g~~~ 107 (381)
...+|+|+|||+.|.++||+|++.+ ..|+++|+....||+++- .+|+..
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGk---asgfLa 63 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGK---ASGFLA 63 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccc---cchhhH
Confidence 4589999999999999999999986 689999999999998765 444443
No 183
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.94 E-value=7.1e-09 Score=100.13 Aligned_cols=41 Identities=34% Similarity=0.472 Sum_probs=37.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
.+||+|||||++|++||..+++.|++|+|+|+++.+||.|-
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 58999999999999999999999999999998778888763
No 184
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.94 E-value=1e-08 Score=98.34 Aligned_cols=63 Identities=11% Similarity=0.172 Sum_probs=46.4
Q ss_pred cchHHHHHHHHhcC---CEEEecceeeEEEEc-----CCCCEEEEEEeCCeEEEecEEEEccCHH-HHhccC
Q 016871 273 RLCLPIVEHIQSLG---GEVRLNSRVQKIELN-----DDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (381)
Q Consensus 273 ~l~~~l~~~l~~~G---~~i~~~t~V~~I~~~-----~~~~~~~V~t~~G~~i~ad~VI~A~~~~-~~~~Ll 335 (381)
.+...|.+.+.+.+ ++++.+++|++|+.+ +++..+.|++.+|++++||.||-|-|.+ .+.+.+
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~ 189 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAA 189 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHc
Confidence 45556777777664 899999999999752 2223346888899999999999999876 344444
No 185
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.93 E-value=9e-09 Score=98.94 Aligned_cols=41 Identities=27% Similarity=0.459 Sum_probs=37.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
++||+|||||++|++||..++++|++|+|+|+ +.+||.|-.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 58999999999999999999999999999998 467887643
No 186
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.93 E-value=2.4e-08 Score=95.85 Aligned_cols=44 Identities=45% Similarity=0.610 Sum_probs=39.9
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 54 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
....++|+|||||++||++|+.|++.|++|+|+|+.+.+||.+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 34578999999999999999999999999999999998888764
No 187
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.93 E-value=2.3e-08 Score=96.11 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=44.6
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 331 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~ 331 (381)
..+.+.+.+.++++|+++++++.|++|+.++ +. +.+.+.+| ++.+|.||+|+|....
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~v~~~~g-~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHE-NQ-VQVHSEHA-QLAVDALLIASGRQPA 255 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CE-EEEEEcCC-eEEeCEEEEeecCCcC
Confidence 3566778888999999999999999998743 32 34666666 7999999999986633
No 188
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.93 E-value=1.6e-08 Score=95.67 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=43.9
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
..+.+.|.+.+.+.|++++ ++.|+.+..++++ .+.|++.+|++++|+.||.|+|.+.
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~-~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADGVA-LSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCc-eeEEEeCCCCEEEeCEEEECCCCch
Confidence 3556678888888899885 6789999874233 3457888887899999999999884
No 189
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.92 E-value=5.8e-08 Score=95.31 Aligned_cols=58 Identities=16% Similarity=0.057 Sum_probs=44.5
Q ss_pred cchHHHHHHHHhc-CCEEEecceeeEEEEcC-----CCCEEEEEEe---CCe--EEEecEEEEccCHHH
Q 016871 273 RLCLPIVEHIQSL-GGEVRLNSRVQKIELND-----DGTVKNFLLT---NGN--VIDGDAYVFATPVDI 330 (381)
Q Consensus 273 ~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~-----~~~~~~V~t~---~G~--~i~ad~VI~A~~~~~ 330 (381)
.+...|.+.+.++ |++|++++.|+++..++ ++.+++|... +|+ .|.|+.||+|||.+.
T Consensus 139 ~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 139 AVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 5667788777765 89999999999998643 3677777753 353 589999999998763
No 190
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.91 E-value=2.5e-08 Score=94.13 Aligned_cols=61 Identities=28% Similarity=0.426 Sum_probs=46.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccC--CceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL--GGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~--gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~ 133 (381)
.+||+|||||++|+++|..|++.|++|+|+|+.+.. .+. .+...+ .++..++++++|+...
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~-------------~~a~~l---~~~~~~~L~~lGl~~~ 64 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGR-------------IRAGVL---EQGTVDLLREAGVDER 64 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCc-------------eeEeeE---CHHHHHHHHHCCChHH
Confidence 479999999999999999999999999999998742 111 112221 3456788889987644
No 191
>PRK05868 hypothetical protein; Validated
Probab=98.91 E-value=5.3e-09 Score=98.07 Aligned_cols=50 Identities=8% Similarity=0.063 Sum_probs=38.9
Q ss_pred hcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH-HHhccC
Q 016871 284 SLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD-ILKLQL 335 (381)
Q Consensus 284 ~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~-~~~~Ll 335 (381)
..|++++++++|++|+.++++ +.|+..+|++++||.||-|-|.+ .+.+++
T Consensus 116 ~~~v~i~~~~~v~~i~~~~~~--v~v~~~dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDGDS--VRVTFERAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred cCCcEEEeCCEEEEEEecCCe--EEEEECCCCeEEeCEEEECCCCCchHHHHh
Confidence 358999999999999874443 34788888899999999999866 444444
No 192
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.90 E-value=3.5e-08 Score=99.21 Aligned_cols=44 Identities=32% Similarity=0.450 Sum_probs=40.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
....+|+|||||++||+||+.|++.|++|+|+|+.+.+||....
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~ 368 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF 368 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence 35679999999999999999999999999999999999997654
No 193
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.90 E-value=1.1e-08 Score=98.86 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=41.5
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe---CCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~---~G~~i~ad~VI~A~~~~ 329 (381)
.+...+.+.+++.|+++++++.|++|..++++.. +++. +++++.+|.||+|+|..
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~--v~~~~~~~~~~i~~D~ViiA~G~~ 265 (463)
T TIGR02053 208 EISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKI--ITVEKPGGQGEVEADELLVATGRR 265 (463)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEE--EEEEeCCCceEEEeCEEEEeECCC
Confidence 4566777888889999999999999987433322 4433 23579999999999855
No 194
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.89 E-value=1.3e-08 Score=91.69 Aligned_cols=65 Identities=20% Similarity=0.269 Sum_probs=52.7
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeC---------------CeEEEecEEEEccCHH--HHhc
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---------------GNVIDGDAYVFATPVD--ILKL 333 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~---------------G~~i~ad~VI~A~~~~--~~~~ 333 (381)
..+++..|-+.+++.|++|+-+..+.++..++++.+.+|-|.+ |-.+.|+.-|+|-|.+ ...+
T Consensus 182 L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskq 261 (621)
T KOG2415|consen 182 LGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQ 261 (621)
T ss_pred HHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHH
Confidence 3488899999999999999999999999999999999998765 2267899999988643 4444
Q ss_pred cC
Q 016871 334 QL 335 (381)
Q Consensus 334 Ll 335 (381)
++
T Consensus 262 i~ 263 (621)
T KOG2415|consen 262 II 263 (621)
T ss_pred HH
Confidence 43
No 195
>PRK09897 hypothetical protein; Provisional
Probab=98.88 E-value=3.6e-08 Score=95.51 Aligned_cols=55 Identities=16% Similarity=0.095 Sum_probs=40.5
Q ss_pred cchHHHHHHHHhcC--CEEEecceeeEEEEcCCCCEEEEEEeC-CeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLG--GEVRLNSRVQKIELNDDGTVKNFLLTN-GNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G--~~i~~~t~V~~I~~~~~~~~~~V~t~~-G~~i~ad~VI~A~~~~ 329 (381)
...+.+.+.+.+.| ++++.+++|++|..++++. .|++.+ |+++.||+||+|+|..
T Consensus 108 ~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~--~V~t~~gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 108 DQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGV--MLATNQDLPSETFDLAVIATGHV 165 (534)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEE--EEEECCCCeEEEcCEEEECCCCC
Confidence 33445666666777 7888999999998855543 477655 4679999999999863
No 196
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.88 E-value=2.3e-08 Score=94.33 Aligned_cols=43 Identities=35% Similarity=0.526 Sum_probs=40.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
...+|+|||||++||++|+.|.+.|+.|+++||.+.+||....
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y 47 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKY 47 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEee
Confidence 4679999999999999999999999999999999999998765
No 197
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.88 E-value=1.7e-07 Score=98.30 Aligned_cols=43 Identities=33% Similarity=0.520 Sum_probs=39.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
..+||+|||||++||+||..|++.|++|+|+|+.+.+||....
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 3679999999999999999999999999999999999998754
No 198
>PTZ00058 glutathione reductase; Provisional
Probab=98.88 E-value=2.4e-09 Score=104.65 Aligned_cols=56 Identities=9% Similarity=0.108 Sum_probs=42.3
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE-eCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL-TNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t-~~G~~i~ad~VI~A~~~~ 329 (381)
.+.+.+.+.+++.|+++++++.|++|+.++++.+. +.. .+++++.+|.||+|+|..
T Consensus 279 ~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~ 335 (561)
T PTZ00058 279 TIINELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRS 335 (561)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCC
Confidence 56677888888899999999999999874443332 333 334579999999999855
No 199
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.87 E-value=2.2e-08 Score=94.63 Aligned_cols=32 Identities=38% Similarity=0.578 Sum_probs=31.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEecc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
+||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 200
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.87 E-value=1.3e-08 Score=96.56 Aligned_cols=60 Identities=40% Similarity=0.544 Sum_probs=44.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~ 133 (381)
.+|+|||||++||++|..|++.|++|+|+|+.+...-. | .|.. ..++..++++++|+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~--------g----~gi~----l~~~~~~~L~~~Gl~~~ 62 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEV--------G----AGLQ----LAPNAMRHLERLGVADR 62 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcC--------C----ccce----eChhHHHHHHHCCChHH
Confidence 58999999999999999999999999999998654210 0 1111 13567778888887543
No 201
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.87 E-value=3.3e-08 Score=86.33 Aligned_cols=59 Identities=25% Similarity=0.218 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHhc------CCEEEecceeeEEEEcCCCCEEEEEEe--CCe--EEEecEEEEccCHHHH
Q 016871 272 ERLCLPIVEHIQSL------GGEVRLNSRVQKIELNDDGTVKNFLLT--NGN--VIDGDAYVFATPVDIL 331 (381)
Q Consensus 272 ~~l~~~l~~~l~~~------G~~i~~~t~V~~I~~~~~~~~~~V~t~--~G~--~i~ad~VI~A~~~~~~ 331 (381)
..++.+|...+++. -++|.+|++|+.|.. +++++.+|... +|+ .+.++.||+|+|.+..
T Consensus 139 fei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 139 FEIVKALSTRLKKKASENPELVKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred hHHHHHHHHHHHHhhhcChHHHhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 47777887777654 279999999999996 67777777754 443 5889999999987754
No 202
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.86 E-value=6.2e-09 Score=98.54 Aligned_cols=70 Identities=24% Similarity=0.398 Sum_probs=54.2
Q ss_pred cCCCceEEecCCc------CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCe--EEEecEEEEccCHH
Q 016871 258 KHGSKMAFLDGNP------PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 258 ~~g~~~~~~~~~~------~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~--~i~ad~VI~A~~~~ 329 (381)
..|.....+...+ ...+.+.+.+.|++.|+++++++.|++++..+++ +.+.+++|+ ++++|+|++|+|-.
T Consensus 194 ~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 194 ALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred HcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCc
Confidence 4666666654432 3578888899998888999999999999985555 457777775 68999999999844
No 203
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.86 E-value=1.7e-08 Score=93.13 Aligned_cols=60 Identities=23% Similarity=0.209 Sum_probs=49.1
Q ss_pred CccchHHHHHHHHhc-CCEEEecceeeEEEEcCCC-CEEEEEEe-----CCeEEEecEEEEccCHHHHh
Q 016871 271 PERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDG-TVKNFLLT-----NGNVIDGDAYVFATPVDILK 332 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~-~~~~V~t~-----~G~~i~ad~VI~A~~~~~~~ 332 (381)
...|.+.|.+.+.++ |++++++++|++|++.+++ +. |++. +..+++|+.|++.+|.+++.
T Consensus 180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~--v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWE--VKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEE--EEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 568999999999888 9999999999999997777 44 4432 22479999999999998555
No 204
>PRK07538 hypothetical protein; Provisional
Probab=98.85 E-value=5.4e-08 Score=92.72 Aligned_cols=59 Identities=36% Similarity=0.537 Sum_probs=44.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~ 132 (381)
+||+|||||++||++|..|++.|++|+|+|+.+...- .|..+ ...++..+.++++|+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~--------------~g~gi--~l~p~~~~~L~~lgl~~ 59 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRP--------------LGVGI--NLLPHAVRELAELGLLD 59 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccc--------------cCcce--eeCchHHHHHHHCCCHH
Confidence 4899999999999999999999999999999865421 11111 11455677778888753
No 205
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.85 E-value=2.6e-08 Score=96.57 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=45.7
Q ss_pred ccchHHHHHHHHhc-CCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSL-GGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~-G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
..+...+.+.+++. |++++ +..|+++..++++.+.+|.+.+|..+.|+.||+|+|.+.
T Consensus 96 ~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 96 VLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 35556677777776 67775 557888876446677899999998899999999999994
No 206
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.85 E-value=1.9e-07 Score=90.15 Aligned_cols=43 Identities=42% Similarity=0.568 Sum_probs=39.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
....+|+|||||++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 4567999999999999999999999999999999999888653
No 207
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.85 E-value=6.2e-08 Score=101.08 Aligned_cols=43 Identities=40% Similarity=0.475 Sum_probs=39.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
...+|+|||||++||+||+.|+++|++|+|+|+.+.+||....
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~ 471 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY 471 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence 4679999999999999999999999999999999999987643
No 208
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.84 E-value=8.4e-08 Score=98.07 Aligned_cols=43 Identities=37% Similarity=0.471 Sum_probs=39.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
...++|+|||||++||+||+.|++.|++|+|+|+.+.+||...
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4577999999999999999999999999999999988888764
No 209
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.84 E-value=2.6e-08 Score=96.48 Aligned_cols=33 Identities=39% Similarity=0.468 Sum_probs=31.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEec
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~ 88 (381)
.++|++|||||++|++||..+++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 368999999999999999999999999999998
No 210
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.83 E-value=1.8e-08 Score=99.35 Aligned_cols=40 Identities=35% Similarity=0.583 Sum_probs=35.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCcee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~ 96 (381)
..+||+|||||++||+||..|++.|++|+|+|++ ..||.+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~ 42 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQI 42 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceE
Confidence 3589999999999999999999999999999985 566654
No 211
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.83 E-value=7.9e-08 Score=88.96 Aligned_cols=53 Identities=32% Similarity=0.467 Sum_probs=45.7
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCe-EEEecEEEEccCHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGN-VIDGDAYVFATPVD 329 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~-~i~ad~VI~A~~~~ 329 (381)
+.++.+...+.|+++|++++++++|++|+. ++ |++.+|+ +|.++.||+|+|..
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~~----v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTP--DG----VTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCceEEECC--Cc----EEEccCCeeEecCEEEEcCCCc
Confidence 568888888999999999999999999975 33 7788886 49999999999865
No 212
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=4.3e-08 Score=94.97 Aligned_cols=42 Identities=33% Similarity=0.434 Sum_probs=37.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
..+||+|||||++|++||..|++.|++|+|+|+. .+||.|-.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 4689999999999999999999999999999985 67877643
No 213
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.82 E-value=1.7e-08 Score=98.07 Aligned_cols=41 Identities=34% Similarity=0.490 Sum_probs=34.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
.+|+|||||++||++|..|.+.|.+|+++|+++.+||....
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 58999999999999999999999999999999999998753
No 214
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.82 E-value=1.9e-07 Score=90.32 Aligned_cols=42 Identities=38% Similarity=0.448 Sum_probs=38.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
.++||+|||||++|+.||..|++.|++|+|+|+.+..||.|-
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 468999999999999999999999999999999878888663
No 215
>PRK06996 hypothetical protein; Provisional
Probab=98.81 E-value=6.9e-08 Score=91.52 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=46.0
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCC---eEEEecEEEEccCH--HHHhccC
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPV--DILKLQL 335 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G---~~i~ad~VI~A~~~--~~~~~Ll 335 (381)
.+-+.|.+.+.+.|++++.++.|++|+.+++++. ++..+| ++++||.||-|-|. ....+.+
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~--v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~ 181 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVT--LALGTPQGARTLRARIAVQAEGGLFHDQKADA 181 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEE--EEECCCCcceEEeeeEEEECCCCCchHHHHHc
Confidence 5667788888888999999999999987555543 555543 58999999999883 4334443
No 216
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.81 E-value=3.3e-08 Score=93.53 Aligned_cols=36 Identities=42% Similarity=0.575 Sum_probs=32.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
+||+|||||++|++||+.|++.|++|+|+|+....+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976533
No 217
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.81 E-value=4.2e-08 Score=86.31 Aligned_cols=38 Identities=34% Similarity=0.450 Sum_probs=33.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHC----CCceEEEeccccC
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDVL 92 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~~ 92 (381)
+..+||+|||||..|++.|+.|.++ |.+|+|+|+++..
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 3578999999999999999999875 7999999998753
No 218
>PLN02507 glutathione reductase
Probab=98.81 E-value=4.2e-08 Score=95.38 Aligned_cols=56 Identities=13% Similarity=0.278 Sum_probs=44.8
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
..+...+.+.++++|+++++++.|++|+.++++ +.+.+.+|+++.+|.||+|+|..
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~ 299 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRA 299 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeecCC
Confidence 355666777888899999999999999864444 24667778789999999999855
No 219
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.79 E-value=5.7e-07 Score=86.80 Aligned_cols=44 Identities=32% Similarity=0.515 Sum_probs=40.0
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
+...+|+|||||++|+++|+.|++.|++|+|+|+.+.+||....
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~ 182 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF 182 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee
Confidence 35679999999999999999999999999999999999987643
No 220
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.79 E-value=3.3e-07 Score=88.84 Aligned_cols=38 Identities=32% Similarity=0.329 Sum_probs=35.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCce
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~ 95 (381)
+||+|||+|++|+.+|+.|++.|++|+++|+....||.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCC
Confidence 59999999999999999999999999999999888763
No 221
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.79 E-value=1.8e-07 Score=89.62 Aligned_cols=37 Identities=32% Similarity=0.547 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 54 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
....+||+|||||++|++||+.|++.|++|+|+|++.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3467899999999999999999999999999999975
No 222
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.78 E-value=1.7e-07 Score=93.97 Aligned_cols=44 Identities=34% Similarity=0.505 Sum_probs=40.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
+...+|+|||||++||++|+.|++.|++|+|+|+.+.+||....
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~ 351 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF 351 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence 35789999999999999999999999999999999999987643
No 223
>PLN02985 squalene monooxygenase
Probab=98.78 E-value=1.7e-07 Score=91.30 Aligned_cols=64 Identities=25% Similarity=0.351 Sum_probs=46.8
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcc
Q 016871 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (381)
Q Consensus 54 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~ 133 (381)
....+||+|||||++|+++|..|++.|++|+|+|+......+. .| . ...++-.+.++++|+...
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~------------~g-~---~L~p~g~~~L~~LGl~d~ 103 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERM------------MG-E---FMQPGGRFMLSKLGLEDC 103 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccc------------cc-c---ccCchHHHHHHHcCCcch
Confidence 4567899999999999999999999999999999975322110 01 1 113455667888888644
No 224
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.78 E-value=7.2e-08 Score=96.20 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=47.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHC-CCceEEEeccccCC--ceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCC
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVLG--GKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIN 131 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~~g--g~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~ 131 (381)
+.++||+|||||++||++|..|++. |.+|+|+|+++... |+.. +..+...++++.+|+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~------------------gl~prtleiL~~lGl~ 91 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD------------------GIACRTMEMFQAFGFA 91 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee------------------EEChHHHHHHHhccch
Confidence 4578999999999999999999994 99999999975421 1110 1246678888999886
Q ss_pred cc
Q 016871 132 DR 133 (381)
Q Consensus 132 ~~ 133 (381)
..
T Consensus 92 d~ 93 (634)
T PRK08294 92 ER 93 (634)
T ss_pred HH
Confidence 44
No 225
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.7e-07 Score=84.47 Aligned_cols=252 Identities=16% Similarity=0.169 Sum_probs=133.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCC------C--------------CCeeecceeeec
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDG------D--------------GDWYETGLHIFF 115 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~------~--------------g~~~d~G~~~~~ 115 (381)
..+||+|+|.|+.-...+..|+..|.+|+.+|+++.-||-..+.... + .+-+|.=+..+.
T Consensus 3 eeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lm 82 (440)
T KOG1439|consen 3 EEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLM 82 (440)
T ss_pred CceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhh
Confidence 34999999999999999999999999999999999999988775410 0 011122222222
Q ss_pred cCCccHHHHHHHhCCCcccceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhh
Q 016871 116 GAYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAII 195 (381)
Q Consensus 116 ~~~~~~~~l~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (381)
....+.+++.+.|+..-+.+......|.+... ++.+. |.. ....+ ...++.+.++-+.. .++....
T Consensus 83 -An~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~--k~~KV------P~t--~~Ea~--~s~lmgl~eKrr~~-kFl~~V~ 148 (440)
T KOG1439|consen 83 -ANGELVKILIHTGVTRYLEFKSISGSFVYKKG--KIYKV------PAT--EAEAL--TSPLMGLFEKRRVM-KFLKFVL 148 (440)
T ss_pred -ccchHHHHHHHhchhhheEEEeecceEEEECC--eEEEC------CCC--HHHHh--cCCccchhHHHHHH-HHHHHHh
Confidence 22346666677777665554443333322211 22111 110 01111 11233333332211 1111111
Q ss_pred c---Ccc-hhhc--cccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhc--ccCCC-ceEEe
Q 016871 196 G---GQA-YVEA--QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHGS-KMAFL 266 (381)
Q Consensus 196 ~---~~~-~~~~--~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~-~~~~~ 266 (381)
. .++ .+.. ....++.+++.+.++.+...+.....+..... -..-+.+....+..+..|.. ..+|. .+.|+
T Consensus 149 n~~e~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~d-d~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP 227 (440)
T KOG1439|consen 149 NYDEEDPKTWQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCD-DSYLDQPAKETLERILLYVRSFARYGKSPYLYP 227 (440)
T ss_pred hhhhhccccccccccccchHHHHHHHhcccccceeeeeeeeEEEec-chhccCccHHHHHHHHHHHHHHhhcCCCcceec
Confidence 1 111 1111 22347888888876654422211100000000 00011222223333333322 12333 23344
Q ss_pred cCCcCccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEE
Q 016871 267 DGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVF 324 (381)
Q Consensus 267 ~~~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~ 324 (381)
-.| ..+|++++++...-.|+++++|.++.+|..+.++++.+|+..++ ..++++||.
T Consensus 228 ~yG-lgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~-v~~~k~vi~ 283 (440)
T KOG1439|consen 228 LYG-LGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGE-VAKCKKVIC 283 (440)
T ss_pred ccC-cchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCc-eeecceEEe
Confidence 344 77999999999888999999999999999866788877766555 667775554
No 226
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.76 E-value=2.9e-07 Score=89.05 Aligned_cols=43 Identities=42% Similarity=0.622 Sum_probs=39.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
...++|+|||||++|+++|..|++.|++|+|+|+.+.+||...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 4567999999999999999999999999999999999998754
No 227
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.6e-07 Score=84.58 Aligned_cols=51 Identities=22% Similarity=0.280 Sum_probs=38.4
Q ss_pred hHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 275 CLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 275 ~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+.+.+++...|+++.. ..|.+++..++ ...|+|.+| +++|+.||+|||..
T Consensus 64 ~~~~~~~a~~~~~~~~~-~~v~~v~~~~~--~F~v~t~~~-~~~ak~vIiAtG~~ 114 (305)
T COG0492 64 MEQMKEQAEKFGVEIVE-DEVEKVELEGG--PFKVKTDKG-TYEAKAVIIATGAG 114 (305)
T ss_pred HHHHHHHHhhcCeEEEE-EEEEEEeecCc--eEEEEECCC-eEEEeEEEECcCCc
Confidence 34455555666778866 78888887433 456999999 59999999999987
No 228
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.75 E-value=3e-07 Score=90.91 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=42.8
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCC--CCEEEEEE---eCCe--EEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDD--GTVKNFLL---TNGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~--~~~~~V~t---~~G~--~i~ad~VI~A~~~~ 329 (381)
.+...+...+++.+++++.++.|+++..+++ +++++|.. .+|+ ++.|+.||+|||.+
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 3344455566666789999999999998542 67888764 3454 57899999999987
No 229
>PRK10262 thioredoxin reductase; Provisional
Probab=98.75 E-value=7.5e-08 Score=88.54 Aligned_cols=42 Identities=36% Similarity=0.596 Sum_probs=36.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
...+||+|||||++||+||..|+++|++|+++|+. ..||.+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~ 45 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT 45 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCcee
Confidence 35789999999999999999999999999999965 5677654
No 230
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.74 E-value=7.4e-09 Score=96.17 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=54.1
Q ss_pred CCceEEecCCcCccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeC---Ce--EEEecEEEEccCHH
Q 016871 260 GSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN---GN--VIDGDAYVFATPVD 329 (381)
Q Consensus 260 g~~~~~~~~~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~---G~--~i~ad~VI~A~~~~ 329 (381)
|+..+|-+..+..++...++-.+.++|+.+..+.+|.++..++++++.++...+ |+ +|+|+.||.|||+.
T Consensus 212 Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpf 286 (680)
T KOG0042|consen 212 GAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPF 286 (680)
T ss_pred eEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCc
Confidence 334433333445688888888888999999999999999998888777777644 43 58999999999877
No 231
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.72 E-value=1.7e-07 Score=92.12 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=42.2
Q ss_pred HHHHHHHH-hcCCEEEecceeeEEEEcCCCCEEEEEEeCC-e---EEEecEEEEccCHHHHhccC
Q 016871 276 LPIVEHIQ-SLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-N---VIDGDAYVFATPVDILKLQL 335 (381)
Q Consensus 276 ~~l~~~l~-~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G-~---~i~ad~VI~A~~~~~~~~Ll 335 (381)
..++..++ +.|++|++++.|++|..+ ++++++|++.++ + .+.++.||+|+|+....+||
T Consensus 197 ~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LL 260 (532)
T TIGR01810 197 RAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLL 260 (532)
T ss_pred HHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHH
Confidence 33444443 457999999999999984 667788887543 2 25789999999985455543
No 232
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.72 E-value=2.7e-07 Score=85.43 Aligned_cols=63 Identities=25% Similarity=0.354 Sum_probs=55.2
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCC
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~ 336 (381)
|.+++..|++.+.++|++++.+++|++|..+ ++.+.+|.|.+| ++.||+||+|+|+| +..|.+
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~-~~~l~~ 198 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSG-DVQADQVVLAAGAW-AGELLP 198 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCC-EEECCEEEEcCChh-hhhccc
Confidence 7899999999999999999999999999974 555667888888 89999999999999 555654
No 233
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.72 E-value=1.4e-07 Score=88.46 Aligned_cols=54 Identities=31% Similarity=0.420 Sum_probs=41.6
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+-+.+.+.+. .+..+++++.|++|+.++++. .|++.+|++++|+.||-|.|..
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~--~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDGV--LVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCceE--EEEECCCCEEEeeEEEECCCcc
Confidence 34445666666 456788999999999855533 4888999899999999999855
No 234
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.71 E-value=9.8e-09 Score=96.75 Aligned_cols=62 Identities=23% Similarity=0.387 Sum_probs=52.7
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCC
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~ 336 (381)
|.+++.+|.+.+++ |++|+++++|++|+.++++ +.|+|.+|+++.||+||+|+|+| ...|++
T Consensus 134 p~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~--~~v~t~~g~~~~a~~vV~a~G~~-~~~l~~ 195 (381)
T TIGR03197 134 PPQLCRALLAHAGI-RLTLHFNTEITSLERDGEG--WQLLDANGEVIAASVVVLANGAQ-AGQLAQ 195 (381)
T ss_pred hHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCe--EEEEeCCCCEEEcCEEEEcCCcc-cccccc
Confidence 78999999999999 9999999999999975443 46889899669999999999999 444544
No 235
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.70 E-value=6e-08 Score=95.77 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=33.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
....+|+|||||++||++|..|++.|++|+|+|+..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999975
No 236
>PLN02546 glutathione reductase
Probab=98.69 E-value=1.2e-08 Score=99.79 Aligned_cols=60 Identities=20% Similarity=0.138 Sum_probs=43.5
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhc
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~ 333 (381)
.+...+.+.++++|+++++++.|++|..++++.+ .+.+.+++...+|.||+|+|......
T Consensus 294 ~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 294 EVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred HHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCC
Confidence 4455667888889999999999999986444433 46666663345899999998664433
No 237
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.68 E-value=3.6e-07 Score=65.40 Aligned_cols=33 Identities=36% Similarity=0.626 Sum_probs=30.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
+|+|||||++|+.+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 589999999999999999999999999998765
No 238
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.66 E-value=2.6e-06 Score=84.42 Aligned_cols=43 Identities=37% Similarity=0.522 Sum_probs=39.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
....+|+|||+|++||++|+.|++.|++|+|+|+.+.+||...
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 4567999999999999999999999999999999999998764
No 239
>PRK02106 choline dehydrogenase; Validated
Probab=98.65 E-value=4.4e-07 Score=89.85 Aligned_cols=36 Identities=36% Similarity=0.406 Sum_probs=33.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHH-CCCceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLAD-AGHKPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~-~g~~v~~~e~~~~ 91 (381)
..+|+||||||.+|+.+|.+|++ .|++|+|||+.+.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 46899999999999999999999 7999999999853
No 240
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.65 E-value=8.1e-08 Score=84.77 Aligned_cols=47 Identities=28% Similarity=0.346 Sum_probs=41.6
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeee
Q 016871 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAW 99 (381)
Q Consensus 53 ~~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~ 99 (381)
....++|..|||||..|+.+|++.++.|.+|.|+|..-.+||.|-..
T Consensus 16 ~~~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~ 62 (478)
T KOG0405|consen 16 ADVKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNV 62 (478)
T ss_pred ccccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEee
Confidence 34568999999999999999999999999999999987888877553
No 241
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.64 E-value=4.6e-07 Score=81.15 Aligned_cols=43 Identities=33% Similarity=0.441 Sum_probs=40.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
.++|++|||+|+.|-.||...++.|.+.+.+|++..+||.+-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 6899999999999999999999999999999999999998754
No 242
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2e-06 Score=76.80 Aligned_cols=249 Identities=16% Similarity=0.173 Sum_probs=131.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeC-------------CCC------Ceeecceeeecc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKD-------------GDG------DWYETGLHIFFG 116 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~-------------~~g------~~~d~G~~~~~~ 116 (381)
..+||+|+|.|+.-...+..|+..|.+|+++|+++.-|+-..+... +++ +-+|.-+..+.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~- 83 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLF- 83 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhc-
Confidence 4799999999999999999999999999999999999988776541 111 11222222222
Q ss_pred CCccHHHHHHHhCCCcccceeecceeeecCCCCCccccccCCCCCCCchhhHHHHHhcCCCCChHHHHHHhhhhhhhhhc
Q 016871 117 AYPNIQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGILAILRNNEMLTWPEKVKFAIGLLPAIIG 196 (381)
Q Consensus 117 ~~~~~~~l~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (381)
+...+..++.+.|+..-+++.+....+.+... ++.+. |.+- .-....+.+.+.++-... .++.....
T Consensus 84 A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~--k~~kV------P~ne----~ei~~s~~lsL~eKr~vm-rFl~~V~n 150 (434)
T COG5044 84 ANSELLKILIETGVTEYLEFKQISGSFLYRPG--KIYKV------PYNE----AEIFTSPLLSLFEKRRVM-RFLKWVSN 150 (434)
T ss_pred ccchHHHHHHHhChHhheeeeeccccEEecCC--cEEEC------CccH----HhhhcCCCcchhhHHHHH-HHHHHHHh
Confidence 23346677777787765555443333322211 11111 1100 001111223332221111 11111100
Q ss_pred Ccc---hhhc--cccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcc--cCC-CceEEecC
Q 016871 197 GQA---YVEA--QDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQE--KHG-SKMAFLDG 268 (381)
Q Consensus 197 ~~~---~~~~--~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g-~~~~~~~~ 268 (381)
... .... .+..+++...+..++.......+...++... + -+.+.......+..|+.. .+| ....|+..
T Consensus 151 ~~~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l---d-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~Y 226 (434)
T COG5044 151 YAEQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL---D-LDIPAREALERILRYMRSFGDYGKSPYLYPRY 226 (434)
T ss_pred HHhhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc---c-ccCCchHHHHHHHHHHHhhcccCCCcceeecc
Confidence 000 0001 1122333334445554433333332222221 1 122333344444444432 233 33455555
Q ss_pred CcCccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEcc
Q 016871 269 NPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFAT 326 (381)
Q Consensus 269 ~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~ 326 (381)
| +.+|++++++...-.|+++.+|+++.+|..... +.+|..... +..|.+||.--
T Consensus 227 G-l~El~QGFaRssav~GgtymLn~~i~ein~tk~--v~~v~~~~~-~~ka~KiI~~~ 280 (434)
T COG5044 227 G-LGELSQGFARSSAVYGGTYMLNQAIDEINETKD--VETVDKGSL-TQKAGKIISSP 280 (434)
T ss_pred C-chhhhHHHHHhhhccCceeecCcchhhhccccc--eeeeecCcc-eeecCcccCCc
Confidence 5 889999999999889999999999999987433 234544444 78888887643
No 243
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.63 E-value=1.2e-06 Score=91.13 Aligned_cols=36 Identities=36% Similarity=0.443 Sum_probs=33.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
.++||+|||||.+||+||..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999875
No 244
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.62 E-value=2.1e-06 Score=86.17 Aligned_cols=43 Identities=40% Similarity=0.612 Sum_probs=39.6
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
....+|+|||||++|+++|+.|++.|++|+|+|+.+.+||...
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999999764
No 245
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.60 E-value=3.2e-07 Score=80.06 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=46.3
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCC---CCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDD---GTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~---~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
..+...+.+.++..|.++.+|=+|..|..+.. +..+.|....|++++...||-|++.+
T Consensus 196 ~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~ 256 (453)
T KOG2665|consen 196 GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQ 256 (453)
T ss_pred HHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEecccc
Confidence 36677788889999999999999999997543 23444555667899999999999876
No 246
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.60 E-value=2.4e-07 Score=85.03 Aligned_cols=58 Identities=36% Similarity=0.546 Sum_probs=51.1
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
...++..+.+.+++.|++|+++|.|..|.. +++.+.+|.+++|++|.+|+||+|.|..
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEccCcc
Confidence 347888999999999999999999999998 4555667999999999999999999754
No 247
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.57 E-value=1.1e-06 Score=84.79 Aligned_cols=55 Identities=9% Similarity=0.153 Sum_probs=41.5
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCC--eEEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG--NVIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G--~~i~ad~VI~A~~~~ 329 (381)
..+.+.+.+.++++|+++++++.|++|+.+ +. .+.+.+ +| +++.+|.||+|+|..
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~-~v~~~~-~g~~~~i~~D~vivA~G~~ 267 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSY-KK-QALFEY-EGSIQEVNAEFVLVSVGRK 267 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEc-CC-EEEEEE-CCceEEEEeCEEEEecCCc
Confidence 356677888888899999999999999863 33 222433 44 368999999999855
No 248
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.55 E-value=2.8e-07 Score=90.27 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=50.8
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEe---CC--eEEEecEEEEccCHHHHhcc
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT---NG--NVIDGDAYVFATPVDILKLQ 334 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~---~G--~~i~ad~VI~A~~~~~~~~L 334 (381)
|.+++.++++.+.++|++|+++++|++|..+ ++.+++|++. +| .+|.|++||+|+|+| ...+
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~w-a~~l 193 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIW-AGRI 193 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcc-hHHH
Confidence 7899999999999999999999999999984 4545556653 34 269999999999999 4444
No 249
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.54 E-value=1.1e-06 Score=85.86 Aligned_cols=44 Identities=36% Similarity=0.396 Sum_probs=40.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
..++||+|||||.+||.||..+++.|.+|+|+||....+|++..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 35789999999999999999999999999999999998877654
No 250
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.53 E-value=8.7e-07 Score=80.60 Aligned_cols=39 Identities=41% Similarity=0.574 Sum_probs=35.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCce
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGK 95 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~ 95 (381)
..+|||||||++||++|..|.+.|++|+|+|++..+-|.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 468999999999999999999999999999998776554
No 251
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.52 E-value=3.8e-06 Score=81.26 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=35.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
.||+|||||++|+.||..+++.|.+|+|+|+.. .||.|-.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~ 41 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVL 41 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccc
Confidence 489999999999999999999999999999865 6776643
No 252
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.49 E-value=1.8e-06 Score=83.09 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=43.3
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
..+.+.+.+.+++.|++++++++|++|.. ++.+..+.+.++ ++.+|.||+|+|..
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~-~i~~d~vi~a~G~~ 245 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKG-EYEADVVIVATGVK 245 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCC-EEEcCEEEECcCCC
Confidence 45667778888899999999999999964 333445666655 89999999999865
No 253
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.47 E-value=2.7e-06 Score=80.60 Aligned_cols=50 Identities=14% Similarity=0.354 Sum_probs=39.1
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
+.+.++++|+++++++.|++|.. ++. +.|++.+|+++.+|.||+|+|...
T Consensus 192 l~~~l~~~GV~i~~~~~V~~i~~-~~~--~~v~l~~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 192 LLQRHQQAGVRILLNNAIEHVVD-GEK--VELTLQSGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHCCCEEEeCCeeEEEEc-CCE--EEEEECCCCEEECCEEEECCCCCh
Confidence 44455677999999999999975 232 347788888899999999998653
No 254
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.45 E-value=3.7e-06 Score=80.38 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=42.9
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
..+.+.+.+.|+++|++++++++|++|.. + .|.+.+|+++.+|.||+|+|..
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~~G~~ 279 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWSTGVG 279 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEccCCC
Confidence 35677788889999999999999999964 2 2667888899999999998744
No 255
>PRK07846 mycothione reductase; Reviewed
Probab=98.41 E-value=1.1e-06 Score=84.44 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=30.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCcee
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~ 96 (381)
++|++|||||++|..||.. ..|.+|+|+|+. ..||.|
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-~~GGtC 37 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-TFGGTC 37 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCcc
Confidence 3799999999999988866 459999999985 456654
No 256
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.40 E-value=5.5e-06 Score=77.21 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=44.6
Q ss_pred CccchHHHHHHHHh-cCCEEEecceeeEEEEcCCCCEEEEEEeCC----eEEEecEEEEccCH
Q 016871 271 PERLCLPIVEHIQS-LGGEVRLNSRVQKIELNDDGTVKNFLLTNG----NVIDGDAYVFATPV 328 (381)
Q Consensus 271 ~~~l~~~l~~~l~~-~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G----~~i~ad~VI~A~~~ 328 (381)
-..+.+.|.+.+++ .++++..++.+.+|..+++..+.+|.+.+. .++.|+.||+|||.
T Consensus 132 G~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG 194 (518)
T COG0029 132 GKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGG 194 (518)
T ss_pred cHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCC
Confidence 34777888888876 489999999999999855534547777433 47899999999974
No 257
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=2e-06 Score=80.84 Aligned_cols=36 Identities=36% Similarity=0.435 Sum_probs=32.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
..+||+|||||.+|+.||.+.++.|.+++++--+-.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~d 38 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLD 38 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCC
Confidence 459999999999999999999999999998876543
No 258
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.37 E-value=5.5e-06 Score=79.53 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=42.2
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
..+...+.+.++++|+++++++.|++|+. . .|++.+|+++.+|.||+|+|..
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~----~v~~~~g~~~~~D~vl~a~G~~ 240 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAING--N----EVTFKSGKVEHYDMIIEGVGTH 240 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEeC--C----EEEECCCCEEEeCEEEECcCCC
Confidence 35667788888899999999999999963 1 2566678789999999999854
No 259
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.32 E-value=7.8e-07 Score=91.62 Aligned_cols=43 Identities=40% Similarity=0.619 Sum_probs=39.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
..++|+|||||++||+||+.|++.|++|+|+|+.+.+||....
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 4679999999999999999999999999999999999998753
No 260
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.31 E-value=9.5e-06 Score=83.44 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=42.2
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
+.+.++++|+++++++.|++|..++++....|.+.+|+++.+|.||+|+|..
T Consensus 193 l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 193 LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcc
Confidence 5556677899999999999998643344556888899899999999999865
No 261
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.31 E-value=1e-06 Score=84.58 Aligned_cols=45 Identities=31% Similarity=0.436 Sum_probs=40.4
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHH--CCCceEEEeccccCCceeee
Q 016871 54 PSKPLKVVIAGAGLAGLSTAKYLAD--AGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 54 ~~~~~~v~iiG~G~~G~~~a~~l~~--~g~~v~~~e~~~~~gg~~~~ 98 (381)
.....+|+|||||++|++||+.|++ .|++|+|+|+.+.+||....
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 3456789999999999999999997 79999999999999998764
No 262
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.30 E-value=1.1e-05 Score=71.21 Aligned_cols=41 Identities=46% Similarity=0.731 Sum_probs=35.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc--CCcee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV--LGGKI 96 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~--~gg~~ 96 (381)
...||+|||+|++||.||..|+.+|.+|+|+|.... +||..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 468999999999999999999999999999998753 55544
No 263
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.29 E-value=3.3e-06 Score=81.28 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=31.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
++|++|||||++|..||.. ..|.+|+++|+. .+||.|-.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-~~GGtC~n 40 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-TFGGTCLN 40 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-CCCCeeec
Confidence 5899999999999998654 469999999984 56776643
No 264
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.26 E-value=1.4e-05 Score=75.15 Aligned_cols=50 Identities=26% Similarity=0.391 Sum_probs=39.7
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
+.+.+++.|++++++++|++|..++++ +.|.+.+|+++.+|.||+|+|..
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDSG--IRATLDSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCCE--EEEEEcCCcEEECCEEEECcCCC
Confidence 445566779999999999999874333 34778888889999999999864
No 265
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.25 E-value=5.9e-06 Score=78.29 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=35.2
Q ss_pred HhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 283 QSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 283 ~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+.|+++++++.|++|+.+ + +. |.+.+|+++.+|++|+|||+.
T Consensus 69 ~~~~i~~~~g~~V~~id~~-~-~~--v~~~~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 69 QENNVHLHSGVTIKTLGRD-T-RE--LVLTNGESWHWDQLFIATGAA 111 (396)
T ss_pred HHCCCEEEcCCEEEEEECC-C-CE--EEECCCCEEEcCEEEEccCCC
Confidence 3468999999999999873 3 33 667788889999999999977
No 266
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.24 E-value=1.6e-05 Score=81.62 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=40.5
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
+.+.++++|+++++++.|++|.. ++....|++.+|+++.+|.||+|+|..
T Consensus 188 l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 188 LQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCC
Confidence 44556678999999999999975 334556888899899999999999855
No 267
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.21 E-value=1.7e-05 Score=76.76 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=39.0
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
+.+.++++|+++++++.|++|+.++++ +.|.+.+|+++.+|.||+|+|..
T Consensus 224 l~~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~g~~l~~D~vl~a~G~~ 273 (466)
T PRK07845 224 LEEVFARRGMTVLKRSRAESVERTGDG--VVVTLTDGRTVEGSHALMAVGSV 273 (466)
T ss_pred HHHHHHHCCcEEEcCCEEEEEEEeCCE--EEEEECCCcEEEecEEEEeecCC
Confidence 445556779999999999999864444 23666778789999999999755
No 268
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.20 E-value=1.7e-06 Score=83.71 Aligned_cols=41 Identities=37% Similarity=0.540 Sum_probs=37.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
..+||+|||||++|++||..|++.|++|+|+|+ +.+||.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 358999999999999999999999999999999 67788654
No 269
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.20 E-value=2.2e-06 Score=88.01 Aligned_cols=44 Identities=39% Similarity=0.589 Sum_probs=40.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
....+|+|||||++|++||+.|++.|++|+|+|+.+.+||....
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 45679999999999999999999999999999999999998743
No 270
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=4.5e-05 Score=69.14 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=78.7
Q ss_pred hhccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhc--ccCCCc-eEEecCCcCccchHH
Q 016871 201 VEAQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQ--EKHGSK-MAFLDGNPPERLCLP 277 (381)
Q Consensus 201 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~-~~~~~~~~~~~l~~~ 277 (381)
.......++.+||+..++.+.+..-++. .+..+..........+.....|+. +++|.. ..|+-.| ...|.+.
T Consensus 217 ~~~~~e~~F~EyL~~~rltp~lqs~vl~----aIaM~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYG-qGELpQc 291 (547)
T KOG4405|consen 217 YVEFRERPFSEYLKTMRLTPKLQSIVLH----AIAMLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYG-QGELPQC 291 (547)
T ss_pred HHHhhcCcHHHHHHhcCCChhhHHHHHH----HHHhcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccC-CCcchHH
Confidence 4556677999999999888765433332 222344555666666666666653 345543 3333333 6699999
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCC-EEEEEEeCCeEEEecEEEEcc
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGT-VKNFLLTNGNVIDGDAYVFAT 326 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~-~~~V~t~~G~~i~ad~VI~A~ 326 (381)
+.+.+.-.|+-+.+..+|+.|..+.... +..+....|+.+.++++|++-
T Consensus 292 FCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~ 341 (547)
T KOG4405|consen 292 FCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSP 341 (547)
T ss_pred HHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeecC
Confidence 9999988999999999999999854322 122334566677777777653
No 271
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.16 E-value=3.1e-05 Score=75.19 Aligned_cols=34 Identities=44% Similarity=0.632 Sum_probs=31.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
..+|+|||||++|+.+|..|++.|.+|+++|+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 3699999999999999999999999999998754
No 272
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.15 E-value=2.4e-06 Score=78.98 Aligned_cols=44 Identities=36% Similarity=0.611 Sum_probs=40.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
....+++|||||++|+.||..|++.|++|.++||++.+||+...
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak 165 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK 165 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence 34668999999999999999999999999999999999999754
No 273
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.14 E-value=5.1e-05 Score=71.07 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=42.2
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+...+.+.++++|+++++++.|++|.. + .|.+.+|+++.+|.||+|+|..
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~--~----~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGPD--G----ALILADGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEcC--C----eEEeCCCCEEecCEEEEccCCC
Confidence 4566778888899999999999999953 2 2667788899999999999855
No 274
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.13 E-value=2.6e-05 Score=72.78 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=32.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHC--C-CceEEEeccccCCce
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADA--G-HKPLLLEARDVLGGK 95 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~--g-~~v~~~e~~~~~gg~ 95 (381)
.++|+|||+|++|++.|.+|.+. . ..|.|+|+....|+-
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~G 42 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQG 42 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCC
Confidence 36899999999999999999985 2 239999999887653
No 275
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.12 E-value=4.9e-06 Score=78.91 Aligned_cols=45 Identities=33% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHH-HCCCceEEEeccccCCceeeeee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARDVLGGKIAAWK 100 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~-~~g~~v~~~e~~~~~gg~~~~~~ 100 (381)
....|+|||||++|+.||.+|+ +.|++|+|+|+.+.+||.....-
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GV 83 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGV 83 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeC
Confidence 4578999999999999999765 57999999999999999887643
No 276
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.10 E-value=4.4e-06 Score=84.94 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=36.3
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCc
Q 016871 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (381)
Q Consensus 54 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg 94 (381)
.+...+|+|||||++|++||++|++.|++|+|+|+....|+
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLL 420 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccccc
Confidence 34678999999999999999999999999999999765444
No 277
>PLN02785 Protein HOTHEAD
Probab=98.10 E-value=6.1e-05 Score=74.53 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...+|+||||||.+|+.+|.+|++ +.+|+|||+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 457999999999999999999999 69999999965
No 278
>PRK14727 putative mercuric reductase; Provisional
Probab=98.10 E-value=4.5e-06 Score=81.02 Aligned_cols=44 Identities=32% Similarity=0.484 Sum_probs=40.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
+.++|++|||||++|+++|..|++.|.+|+++|+.+.+||.+-.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 45789999999999999999999999999999998888988754
No 279
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.08 E-value=4.5e-06 Score=77.95 Aligned_cols=36 Identities=42% Similarity=0.379 Sum_probs=33.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~ 92 (381)
..||+|||||++|+.+|+.|+++|++|+|+|+++..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 359999999999999999999999999999987654
No 280
>PRK14694 putative mercuric reductase; Provisional
Probab=98.08 E-value=4.7e-06 Score=80.73 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhcc
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ 334 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~L 334 (381)
..+...+.+.+++.|+++++++.|++|..+ ++. +.+.+.++ ++.+|.||+|+|......+
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAG-TLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCC-EEEeCEEEEccCCCCCcCC
Confidence 356778888889999999999999999864 332 33666555 7999999999987644444
No 281
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.08 E-value=4.9e-05 Score=72.84 Aligned_cols=48 Identities=29% Similarity=0.411 Sum_probs=36.8
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
+.+.+++.|+++++++.|++|..+ +.+ +.+.+|+++.+|.||+|+|..
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTSGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcCCCEEEeCEEEECCCcc
Confidence 444456679999999999999752 333 445677789999999999865
No 282
>PRK13748 putative mercuric reductase; Provisional
Probab=98.07 E-value=4e-06 Score=83.23 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=45.1
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHh
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILK 332 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~ 332 (381)
..+...+.+.+++.|+++++++.|++|..+ ++. +.+.+.++ ++.+|.||+|+|.....
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeCEEEEccCCCcCC
Confidence 356677888889999999999999999874 333 33666666 79999999999865333
No 283
>PRK07846 mycothione reductase; Reviewed
Probab=98.06 E-value=5.9e-05 Score=72.64 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=37.1
Q ss_pred cCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccC
Q 016871 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (381)
Q Consensus 285 ~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll 335 (381)
.|++++++++|++|+.++++ +.|.+.+|+++.+|.||+|+|......++
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSG--VTLRLDDGSTVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCE--EEEEECCCcEeecCEEEEEECCccCcccc
Confidence 46899999999999864333 34667778789999999999866444443
No 284
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.05 E-value=1.1e-05 Score=82.70 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=36.6
Q ss_pred HHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 282 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 282 l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
++++|++++++++|++|+.+ .+. |++.+|+++.+|++|+|||+.
T Consensus 64 ~~~~gv~~~~g~~V~~Id~~--~k~--V~~~~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 64 YEKHGITLYTGETVIQIDTD--QKQ--VITDAGRTLSYDKLILATGSY 107 (785)
T ss_pred HHHCCCEEEcCCeEEEEECC--CCE--EEECCCcEeeCCEEEECCCCC
Confidence 35568999999999999863 333 778888889999999999976
No 285
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.05 E-value=1.8e-05 Score=81.36 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=36.6
Q ss_pred HHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 282 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 282 l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
++++|+++++++.|++|+.+ .++ |.+.+|+++.+|++|+|||++.
T Consensus 69 ~~~~gI~~~~g~~V~~Id~~--~~~--V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 69 YEKHGIKVLVGERAITINRQ--EKV--IHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHhCCCEEEcCCEEEEEeCC--CcE--EEECCCcEEECCEEEECCCCCc
Confidence 34568999999999999863 333 7788888899999999999873
No 286
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.04 E-value=5.1e-06 Score=80.95 Aligned_cols=61 Identities=21% Similarity=0.111 Sum_probs=47.2
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccC
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll 335 (381)
.+.+.+.+.++++|+++++++.|++|...+++ +.|.+.+|+++.+|.||+|+|......++
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~pn~~~l 283 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKMDDK--IKVLFSDGTTELFDTVLYATGRKPDIKGL 283 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCe--EEEEECCCCEEEcCEEEEeeCCCCCcccc
Confidence 45677888899999999999999999874333 34666778789999999999866444443
No 287
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=98.04 E-value=6.1e-05 Score=70.00 Aligned_cols=60 Identities=22% Similarity=0.252 Sum_probs=52.0
Q ss_pred HHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCC
Q 016871 277 PIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (381)
Q Consensus 277 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~ 336 (381)
.+.+.++++|++++++|.+.+++.+.+|.+..|.+.+|.++.||.||+.+|+.....++.
T Consensus 260 ~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 260 FYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 356667888999999999999998888989999999999999999999999886665554
No 288
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.04 E-value=5.1e-06 Score=77.74 Aligned_cols=36 Identities=36% Similarity=0.509 Sum_probs=33.6
Q ss_pred eEEEEcCChhHHHHHHHHHHC--CCceEEEeccccCCc
Q 016871 59 KVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGG 94 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~gg 94 (381)
||+|||||++|+++|+.|++. |++|+|+|+.+.++|
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 899999999999999999987 999999999887765
No 289
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.02 E-value=5.8e-05 Score=72.69 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=38.9
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
+.+.++++|+++++++.|++|..++++. .|.+.+|+++.+|.||+|+|..
T Consensus 213 l~~~l~~~gV~i~~~~~v~~i~~~~~~~--~v~~~~g~~i~~D~viva~G~~ 262 (446)
T TIGR01424 213 LARNMEGRGIRIHPQTSLTSITKTDDGL--KVTLSHGEEIVADVVLFATGRS 262 (446)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCCeE--EEEEcCCcEeecCEEEEeeCCC
Confidence 3344566799999999999998744442 3666678789999999999865
No 290
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.02 E-value=4.1e-05 Score=70.62 Aligned_cols=35 Identities=34% Similarity=0.394 Sum_probs=27.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC-CceEEEecccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDV 91 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~ 91 (381)
.+|+++||.|+++|+.|..|.+.+ .+++.+|+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 369999999999999999999876 89999998764
No 291
>PRK14694 putative mercuric reductase; Provisional
Probab=98.02 E-value=7.8e-05 Score=72.27 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=30.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEecc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
..+++|||+|++|+..|..|++.|.+|+++++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 358999999999999999999999999999863
No 292
>PTZ00367 squalene epoxidase; Provisional
Probab=98.00 E-value=7e-06 Score=80.63 Aligned_cols=64 Identities=30% Similarity=0.326 Sum_probs=46.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCcc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGINDR 133 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~~ 133 (381)
..++||+|||||++|+++|..|++.|++|+|+|+..... ..+ . .|.. ..++-.+.++++|+...
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~--~~r---~------~G~~----L~p~g~~~L~~LGL~d~ 94 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSK--PDR---I------VGEL----LQPGGVNALKELGMEEC 94 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccc--cch---h------hhhh----cCHHHHHHHHHCCChhh
Confidence 357899999999999999999999999999999965200 000 0 1111 24566778888887643
No 293
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.99 E-value=8e-06 Score=79.12 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=47.0
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDIL 331 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~ 331 (381)
..+.+.+.+.|+++|+++++++.|++|..++++. ..|.+.+|+++.+|.||+|+|....
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 4667788889999999999999999998754443 3466667778999999999985533
No 294
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.99 E-value=8.5e-05 Score=72.06 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=30.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHH---CCCceEEEeccccC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLAD---AGHKPLLLEARDVL 92 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~---~g~~v~~~e~~~~~ 92 (381)
..+++|||||++|+..|..+.. .|.+|+|+|+.+.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 4689999999999999976654 49999999987654
No 295
>PRK14727 putative mercuric reductase; Provisional
Probab=97.99 E-value=0.00011 Score=71.54 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=39.8
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhc
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKL 333 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~ 333 (381)
+.+.+++.|+++++++.|++|..++++ +.+.+.++ ++.+|.||+|+|...-..
T Consensus 234 l~~~L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 234 LTACFEKEGIEVLNNTQASLVEHDDNG--FVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred HHHHHHhCCCEEEcCcEEEEEEEeCCE--EEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 445556779999999999999864433 33666666 799999999998774443
No 296
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.96 E-value=9.1e-06 Score=73.11 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=34.0
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 54 PSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 54 ~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.+...||+|||||++|.+.|+.|++.|.+|.|+|+.=
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 4568899999999999999999999999999999853
No 297
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.96 E-value=8.6e-06 Score=82.02 Aligned_cols=46 Identities=35% Similarity=0.475 Sum_probs=42.2
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 53 ~~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
.....+.|+|||+|++||+||-+|-+.||.|+|+|+.+++||....
T Consensus 1781 ~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1781 AFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred ccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 3456789999999999999999999999999999999999998765
No 298
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.95 E-value=9.6e-06 Score=76.17 Aligned_cols=36 Identities=39% Similarity=0.386 Sum_probs=32.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
.||+|||||++|++||+.|+++|++|+|+|+++..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 389999999999999999999999999999877643
No 299
>PRK13748 putative mercuric reductase; Provisional
Probab=97.95 E-value=0.00012 Score=72.67 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=30.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEecc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
..+++|||||.+|+..|..|.+.|.+|+|+++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 368999999999999999999999999999874
No 300
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.93 E-value=9.2e-05 Score=70.40 Aligned_cols=38 Identities=50% Similarity=0.718 Sum_probs=35.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg 94 (381)
..+++|||+|..|+.+|..|+++|++|+++|+.++++|
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~ 173 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccch
Confidence 57999999999999999999999999999999877665
No 301
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.93 E-value=0.00013 Score=67.65 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=45.3
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCC-eEEEecEEEEccCHHH
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG-NVIDGDAYVFATPVDI 330 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G-~~i~ad~VI~A~~~~~ 330 (381)
...+++.|...+++.||+|+++++|++| . +++ ..|.+..+ +++.||+||+|||...
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i-~-~~~--~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGW-Q-GGT--LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEE-e-CCc--EEEEECCCceEEecCEEEEcCCCcc
Confidence 5688999999999999999999999999 2 333 35776543 4699999999998743
No 302
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.92 E-value=1.3e-05 Score=68.19 Aligned_cols=33 Identities=48% Similarity=0.581 Sum_probs=30.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
||+|||||++|++||..|++.|.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987554
No 303
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.91 E-value=1.5e-05 Score=75.77 Aligned_cols=44 Identities=36% Similarity=0.480 Sum_probs=40.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
....+|+|||||++||+||+.|++.|+.|+++|+.+..||....
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 34589999999999999999999999999999999999998865
No 304
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.90 E-value=1.9e-05 Score=76.64 Aligned_cols=43 Identities=37% Similarity=0.536 Sum_probs=39.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~ 98 (381)
...+|+|||||++|+++|..|++.|++|+|+|+.+.+||.+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~ 184 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY 184 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeec
Confidence 4579999999999999999999999999999999999987643
No 305
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.89 E-value=0.00014 Score=68.58 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=33.6
Q ss_pred HHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 282 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 282 l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
+++.|+++++++.|++|+.+ + +. |.+ +|+++.+|+||+|||+.
T Consensus 68 ~~~~gv~~~~~~~V~~id~~-~-~~--v~~-~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 68 AEQFNLRLFPHTWVTDIDAE-A-QV--VKS-QGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHhCCCEEECCCEEEEEECC-C-CE--EEE-CCeEEeCCEEEECCCCC
Confidence 35568999999999999863 3 33 545 55589999999999976
No 306
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.88 E-value=0.00015 Score=70.50 Aligned_cols=34 Identities=32% Similarity=0.486 Sum_probs=31.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
..+|+|||+|.+|+.+|..|++.|.+|+|+|+++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3689999999999999999999999999999754
No 307
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.86 E-value=0.00021 Score=71.48 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=31.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
..+|+|||||++|+..|..|++.|.+|+++|+.+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 35899999999999999999999999999998554
No 308
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.86 E-value=1.7e-05 Score=79.06 Aligned_cols=42 Identities=26% Similarity=0.454 Sum_probs=36.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEecc-ccCCceeee
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR-DVLGGKIAA 98 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~-~~~gg~~~~ 98 (381)
++||+|||||++|..||..+++.|.+|+|+|+. +.+||.|-.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 689999999999999999999999999999974 357776643
No 309
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.84 E-value=3.2e-05 Score=72.06 Aligned_cols=42 Identities=38% Similarity=0.451 Sum_probs=38.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
...+|+|||||++|+++|..|++.|++|+++|+.+.+||...
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 456999999999999999999999999999999999988764
No 310
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.80 E-value=0.00023 Score=69.40 Aligned_cols=32 Identities=31% Similarity=0.418 Sum_probs=29.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEecc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
.+++|||||.+|+..|..|++.|.+|+++++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 48999999999999999999999999999863
No 311
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.78 E-value=2.7e-05 Score=75.62 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCC---eEEEecEEEEccCHHHHhcc
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNG---NVIDGDAYVFATPVDILKLQ 334 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G---~~i~ad~VI~A~~~~~~~~L 334 (381)
..+.+.+.+.|+++|++|++++.+++|...+++ +.|+..+| +++.+|.||+|+|......+
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAK--VKVTFTDSTNGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCe--EEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence 356677888899999999999999999874333 23554444 37999999999986533333
No 312
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.74 E-value=0.00028 Score=68.53 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=29.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEec
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~ 88 (381)
.+++|||||.+|+.+|..|++.|.+|+++++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 4799999999999999999999999999986
No 313
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.8e-05 Score=70.06 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=45.6
Q ss_pred CcCccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEE---EeCCe--EEEecEEEEccCHH
Q 016871 269 NPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFL---LTNGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 269 ~~~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~---t~~G~--~i~ad~VI~A~~~~ 329 (381)
|-.+.+++.+.++++++|+++.-.+-+++|+..+++.. .|. |..++ +-.+|.|++|+|-.
T Consensus 235 GFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~ 299 (503)
T KOG4716|consen 235 GFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRK 299 (503)
T ss_pred cccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccc
Confidence 33578899999999999999999999999998777652 233 22332 45789999999855
No 314
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=7.6e-05 Score=66.41 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=49.7
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEc-CCCCEEEEEEeCCeEEEecEEEEccCHHHHhcc-CCC
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELN-DDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ-LPE 337 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~-~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~L-l~~ 337 (381)
++..+|.++.++..++++.-.+++++++. ..+....|++.+|...+++.||++||+. +..+ +|.
T Consensus 267 kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr-WRn~nvPG 332 (520)
T COG3634 267 KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR-WRNMNVPG 332 (520)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcc-hhcCCCCc
Confidence 45566777777778888888888888873 2343557999999899999999999988 6665 555
No 315
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.73 E-value=0.00029 Score=67.97 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=36.9
Q ss_pred cCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccC
Q 016871 285 LGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQL 335 (381)
Q Consensus 285 ~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll 335 (381)
.|+++++++.|++|+.++++ +.|++.+|+++.+|.||+|+|......++
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 270 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGDLL 270 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCe--EEEEEcCCCEEEcCEEEEeeccCcCCCCc
Confidence 46899999999999874444 23666778789999999999866444443
No 316
>PRK13984 putative oxidoreductase; Provisional
Probab=97.73 E-value=5.5e-05 Score=75.73 Aligned_cols=43 Identities=40% Similarity=0.518 Sum_probs=39.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceee
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIA 97 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~ 97 (381)
....+|+|||+|++|+++|..|++.|++|+|+|+.+.+||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 4567899999999999999999999999999999999998764
No 317
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.73 E-value=0.00038 Score=67.53 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=31.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
..+++|||||.+|+..|..|.+.|.+|+|+|+.+.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 35899999999999999999999999999997543
No 318
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.69 E-value=0.0005 Score=68.19 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=48.9
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVDI 330 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~~ 330 (381)
..+...|.+.+.+.|++|+.++.++++..+++|++++|.. .+|+ .|.|+.||+|||.+.
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 4678889888888899999999999999865778888875 3564 578999999998763
No 319
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.63 E-value=6e-05 Score=77.31 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--CCceEEEecccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDV 91 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~ 91 (381)
++|+|||||++||++|..|++. |++|+|+|++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4899999999999999999998 899999999875
No 320
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00065 Score=63.14 Aligned_cols=35 Identities=34% Similarity=0.486 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEecc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
...+||||||||.+|..||.+.++.|.+.+++-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 56889999999999999999999999998888765
No 321
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.61 E-value=2.1e-05 Score=64.98 Aligned_cols=65 Identities=31% Similarity=0.387 Sum_probs=47.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHC--CCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCC--ccHHHHHHHhCCC
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAY--PNIQNLFGELGIN 131 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~--~~~~~l~~~~gl~ 131 (381)
...||+|||+|.+||++||.++++ ..+|.|+|..-.+||-.- .|++.+..-- ....-+++++|+.
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW-----------LGGQLFSAMvvRKPAhLFL~Eigvp 143 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW-----------LGGQLFSAMVVRKPAHLFLQEIGVP 143 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc-----------ccchhhhhhhhcChHHHHHHHhCCC
Confidence 457999999999999999999965 679999999877766331 5566554211 1233456888876
No 322
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.53 E-value=0.0012 Score=63.84 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=31.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
..+++|||+|.+|+..|..|++.|.+|+++|+.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4689999999999999999999999999999754
No 323
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.44 E-value=0.00034 Score=64.81 Aligned_cols=116 Identities=22% Similarity=0.311 Sum_probs=77.0
Q ss_pred ccccccHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHhhcccCCCceEEecCCcCccchHHHHHHH
Q 016871 203 AQDGLTVQEWMRKQGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHI 282 (381)
Q Consensus 203 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~~l 282 (381)
.....+.++||++.|+.+.+.++++.+.++..++-+. .+.....+..+. +..+..|..- || ..++++.|++.
T Consensus 66 ~~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~~G~vSla----~a~~gl~sV~-GG-N~qI~~~ll~~- 137 (368)
T PF07156_consen 66 NLTKVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHAFAGLVSLA----GATGGLWSVE-GG-NWQIFEGLLEA- 137 (368)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhhhhhheeee----eccCCceEec-CC-HHHHHHHHHHH-
Confidence 3456788999999999999999999998888886542 344433322221 1223334333 33 67888888865
Q ss_pred HhcCCEEEecceeeEEE-EcCCCC-EEEEEEeC--Ce-EEEecEEEEccCHH
Q 016871 283 QSLGGEVRLNSRVQKIE-LNDDGT-VKNFLLTN--GN-VIDGDAYVFATPVD 329 (381)
Q Consensus 283 ~~~G~~i~~~t~V~~I~-~~~~~~-~~~V~t~~--G~-~i~ad~VI~A~~~~ 329 (381)
.|+++ +|++|++|. ..+++. .+.|...+ +. .-.+|.||+|+|..
T Consensus 138 --S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~ 186 (368)
T PF07156_consen 138 --SGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQ 186 (368)
T ss_pred --ccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcc
Confidence 46889 999999994 434443 33454433 21 34579999999986
No 324
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00016 Score=71.09 Aligned_cols=36 Identities=42% Similarity=0.484 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
..++|+||||+|.+|..+|..|+..|++|+|||+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 468999999999999999999998899999999964
No 325
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.36 E-value=0.00038 Score=62.86 Aligned_cols=45 Identities=27% Similarity=0.228 Sum_probs=40.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHC--CCceEEEeccccCCceeeeee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLGGKIAAWK 100 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~gg~~~~~~ 100 (381)
....|.|||+|++|+.+|+.|.++ +..|.|+|+.+.+.|.....-
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGV 65 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGV 65 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeecc
Confidence 445999999999999999999985 689999999999999887654
No 326
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0023 Score=53.67 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=44.7
Q ss_pred cchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhcc-CCCc
Q 016871 273 RLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQ-LPEN 338 (381)
Q Consensus 273 ~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~L-l~~~ 338 (381)
.|.+.+.++..+.|.+|.+.| |.+++.. +....+.|..+ .+.||.||+|||+. +.+| +|..
T Consensus 71 ~l~d~mrkqs~r~Gt~i~tEt-Vskv~~s--skpF~l~td~~-~v~~~avI~atGAs-AkRl~~pg~ 132 (322)
T KOG0404|consen 71 ELMDKMRKQSERFGTEIITET-VSKVDLS--SKPFKLWTDAR-PVTADAVILATGAS-AKRLHLPGE 132 (322)
T ss_pred HHHHHHHHHHHhhcceeeeee-hhhcccc--CCCeEEEecCC-ceeeeeEEEecccc-eeeeecCCC
Confidence 345557777777788997765 8888763 33445777666 89999999999999 6665 5654
No 327
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.00047 Score=61.10 Aligned_cols=37 Identities=38% Similarity=0.489 Sum_probs=33.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
...|-|||||++|..|||+++++|..|.++|-++.-+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 4568999999999999999999999999999887544
No 328
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.09 E-value=0.00096 Score=63.64 Aligned_cols=39 Identities=33% Similarity=0.430 Sum_probs=35.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg 94 (381)
-+..++|||||+.|+..|..+++.|.+|+|+|+.+++--
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 456899999999999999999999999999999887553
No 329
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.93 E-value=0.0031 Score=62.00 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=42.8
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHH
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~ 329 (381)
|.+.++++|+++++++.+++|.. .+.+.+|..++|..+.||.||+|+|..
T Consensus 193 L~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIr 242 (793)
T COG1251 193 LRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIR 242 (793)
T ss_pred HHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEecccc
Confidence 66667788999999999999985 455678999999889999999999755
No 330
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.91 E-value=0.0086 Score=55.35 Aligned_cols=35 Identities=17% Similarity=0.165 Sum_probs=26.4
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCC--ceEEEecc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEAR 89 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~ 89 (381)
.....|+|||||.++..++..|.+.+. +|+++=++
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~ 224 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRS 224 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECC
Confidence 467799999999999999999999864 78888653
No 331
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.82 E-value=0.017 Score=53.19 Aligned_cols=37 Identities=30% Similarity=0.360 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCC-CceEEEecccc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDV 91 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~ 91 (381)
....|++.||-|+.-|+.|..|.+.+ .+++.+|+.+.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 35689999999999999999999875 78999999764
No 332
>PRK06370 mercuric reductase; Validated
Probab=96.74 E-value=0.0032 Score=61.01 Aligned_cols=38 Identities=29% Similarity=0.389 Sum_probs=34.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGG 94 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg 94 (381)
..+|+|||+|.+|+.+|..|++.|.+|+++|+.+.+..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~ 208 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP 208 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc
Confidence 46899999999999999999999999999999876543
No 333
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.62 E-value=0.004 Score=60.40 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=33.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
..+++|||+|.+|+.+|..|++.|.+|+++|+.+.+.
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 202 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL 202 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC
Confidence 3689999999999999999999999999999876543
No 334
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.51 E-value=0.003 Score=51.39 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=30.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
+|.|||||..|.++|..|+++|++|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998764
No 335
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.45 E-value=0.0064 Score=58.51 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=33.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
..+|+|||||.+|+.+|..|++.|.+|+++|+.+.+.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 193 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL 193 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence 3589999999999999999999999999999987654
No 336
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.44 E-value=0.0032 Score=61.19 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=34.5
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHC-CCceEEEeccccC
Q 016871 54 PSKPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEARDVL 92 (381)
Q Consensus 54 ~~~~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~~~~~ 92 (381)
....+|.||||||-+|+..|..|++. ..+|+++|+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45789999999999999999999987 5899999996554
No 337
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.40 E-value=0.0039 Score=52.16 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=27.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
++|.|||.|+.||..|..|++.|++|+.+|.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 4799999999999999999999999999998764
No 338
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.35 E-value=0.0068 Score=58.73 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=33.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
..+++|||||.+|+.+|..|++.|.+|+++|+++.+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 211 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 4689999999999999999999999999999987654
No 339
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.35 E-value=0.007 Score=58.34 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=32.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~ 92 (381)
..+|+|||||++|+.+|..|.+.|.+|+++++.+.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 184 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI 184 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence 468999999999999999999999999999987654
No 340
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.31 E-value=0.0055 Score=51.05 Aligned_cols=33 Identities=33% Similarity=0.416 Sum_probs=28.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
+|.|||+|..|...|..++..|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999998654
No 341
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.29 E-value=0.011 Score=56.95 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...+|+|||||.+|+-+|..|.+.|.+|+++++++
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 45689999999999999999999999999998754
No 342
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.29 E-value=0.0059 Score=59.49 Aligned_cols=34 Identities=32% Similarity=0.615 Sum_probs=31.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
..+|+|||+|.+|+++|..|.++|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4589999999999999999999999999999765
No 343
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.20 E-value=0.0091 Score=57.80 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=33.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
..+++|||||.+|+.+|..|.+.|.+|+++|+.+.+.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll 206 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL 206 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 3589999999999999999999999999999877643
No 344
>PRK12831 putative oxidoreductase; Provisional
Probab=96.11 E-value=0.015 Score=56.35 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=31.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...+|+|||||.+|+-+|..|.+.|.+|+++++++
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 45799999999999999999999999999998654
No 345
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.04 E-value=0.0077 Score=58.33 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=30.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
+|+|||.|.+|+++|+.|.++|++|+++|++..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998764
No 346
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.03 E-value=0.0076 Score=55.34 Aligned_cols=37 Identities=41% Similarity=0.543 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHC----CCceEEEecccc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADA----GHKPLLLEARDV 91 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~----g~~v~~~e~~~~ 91 (381)
+..+||+|+|||+.|++.|..|... .++|+++|..+.
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 3579999999999999999999865 469999998743
No 347
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.95 E-value=0.011 Score=51.24 Aligned_cols=66 Identities=30% Similarity=0.527 Sum_probs=44.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHHHHHHhCCCc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQNLFGELGIND 132 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~gl~~ 132 (381)
++++|||+|-.|.+.|..|.+.|++|+++|+.+..--...+ -+.+.+.+.+. ..-.+.+++.|++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~--------~~~~~~~v~gd-~t~~~~L~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLA--------DELDTHVVIGD-ATDEDVLEEAGIDD 66 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhh--------hhcceEEEEec-CCCHHHHHhcCCCc
Confidence 47999999999999999999999999999987642211001 01333443322 22345677888774
No 348
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.92 E-value=0.011 Score=47.77 Aligned_cols=31 Identities=39% Similarity=0.502 Sum_probs=28.9
Q ss_pred EEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 60 v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
|+|+|+|..|+..|+.|++.|++|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999998754
No 349
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=95.88 E-value=0.013 Score=56.66 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=33.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
..+++|||||.+|+..|..|++.|.+|+++|+.+.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 3589999999999999999999999999999887654
No 350
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.82 E-value=0.014 Score=56.70 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=33.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
..+++|||||++|+..|..|++.|.+|+++|+.+.+.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il 210 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC 210 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 4689999999999999999999999999999877653
No 351
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=95.81 E-value=0.014 Score=56.63 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=33.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
..+++|||||.+|+.+|..|.+.|.+|+++|+.+.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 206 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL 206 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC
Confidence 3589999999999999999999999999999987653
No 352
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.78 E-value=0.012 Score=53.62 Aligned_cols=33 Identities=42% Similarity=0.467 Sum_probs=31.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.+|.|||+|..|.+.|..|++.|++|+++|++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 379999999999999999999999999999875
No 353
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.76 E-value=0.41 Score=44.63 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=33.5
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 53 RPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 53 ~~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
.......|||+|+|.+|.+....|-..-++|+|+.-++.
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny 89 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY 89 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccc
Confidence 345678999999999999999999888899999987764
No 354
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.71 E-value=0.015 Score=55.93 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=33.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
..+++|||||.+|+..|..|++.|.+|+++++.+.+.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 3589999999999999999999999999999887654
No 355
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.67 E-value=0.017 Score=56.07 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=33.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
..+++|||||.+|+.+|..|++.|.+|+++|+.+.+.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 208 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL 208 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC
Confidence 3589999999999999999999999999999977653
No 356
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=95.59 E-value=0.018 Score=55.81 Aligned_cols=36 Identities=36% Similarity=0.459 Sum_probs=32.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~ 92 (381)
..+++|||+|.+|+.+|..|++.|.+|+|+|+.+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 358999999999999999999999999999987654
No 357
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.58 E-value=0.013 Score=51.59 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=39.2
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCCCc
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPEN 338 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~~~ 338 (381)
.++..-|.+.+.++|+++ .+.+|+++..- + .-.+|.||.|+|.+ ...|..+.
T Consensus 151 ~~ylpyl~k~l~e~Gvef-~~r~v~~l~E~-------~------~~~~DVivNCtGL~-a~~L~gDd 202 (342)
T KOG3923|consen 151 PKYLPYLKKRLTENGVEF-VQRRVESLEEV-------A------RPEYDVIVNCTGLG-AGKLAGDD 202 (342)
T ss_pred hhhhHHHHHHHHhcCcEE-EEeeeccHHHh-------c------cCCCcEEEECCccc-cccccCCc
Confidence 367777999999999998 56677777541 1 12488999999999 78887764
No 358
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.49 E-value=0.034 Score=57.33 Aligned_cols=35 Identities=20% Similarity=0.287 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCc-eEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~ 90 (381)
...+|+|||||.+|+-+|..+.+.|.+ |+++++++
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 456899999999999999999999987 99998754
No 359
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.48 E-value=0.018 Score=52.94 Aligned_cols=33 Identities=30% Similarity=0.640 Sum_probs=31.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
++|.|||+|+.||+.|..|++.||+|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999865
No 360
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.47 E-value=0.027 Score=46.41 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=29.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
....|+|+|+|.+|..||..|...|.+|+++|.+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 45899999999999999999999999999999743
No 361
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.47 E-value=0.031 Score=53.85 Aligned_cols=36 Identities=31% Similarity=0.390 Sum_probs=32.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
.+++|||+|.+|+..|..|.+.|.+|+++|+.+.+.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 194 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL 194 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 489999999999999999999999999999876543
No 362
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.40 E-value=0.046 Score=50.91 Aligned_cols=34 Identities=32% Similarity=0.333 Sum_probs=30.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCc-eEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~ 90 (381)
...|+|||+|..|+.+|..|.+.|.+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 46899999999999999999999987 99998754
No 363
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.36 E-value=0.022 Score=48.34 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=29.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...+|+|||+|.++..+|..|++.|.+|+++=|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 45899999999999999999999999999998765
No 364
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.32 E-value=0.025 Score=54.59 Aligned_cols=34 Identities=38% Similarity=0.698 Sum_probs=31.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...|+|+|+|.+|+++|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 5689999999999999999999999999999864
No 365
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.28 E-value=0.034 Score=50.72 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=31.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
-..|.|||+|..|...|..++..|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999864
No 366
>PTZ00058 glutathione reductase; Provisional
Probab=95.25 E-value=0.026 Score=55.74 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=33.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
..+|+|||||..|+..|..|++.|.+|+++|+++.+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 4689999999999999999999999999999877543
No 367
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.25 E-value=0.026 Score=50.92 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.+|.|||+|..|.+.|..|++.|++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 479999999999999999999999999999764
No 368
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.24 E-value=0.033 Score=51.00 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
..++|.|||+|..|...|..|++.|++|+++.++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34689999999999999999999999999998854
No 369
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.24 E-value=0.026 Score=50.97 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=31.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
.+|.|||+|..|...|..|++.|++|+++|.++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 3699999999999999999999999999998643
No 370
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.15 E-value=0.03 Score=55.09 Aligned_cols=35 Identities=31% Similarity=0.354 Sum_probs=31.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...+|+|||||.+|+.+|..|++.|.+|+++|+.+
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~ 385 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence 35699999999999999999999999999998654
No 371
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.13 E-value=0.056 Score=53.76 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEE---eCCe--EEEecEEEEccCHH
Q 016871 272 ERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLL---TNGN--VIDGDAYVFATPVD 329 (381)
Q Consensus 272 ~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t---~~G~--~i~ad~VI~A~~~~ 329 (381)
..++..|.+.+++.|++|+++++|+++.. ++|++++|.. .+|+ .|.|+.||+|||..
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~-~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~ 180 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLM-EDGECRGVIAYCLETGEIHRFRAKAVVLATGGY 180 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEe-eCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCc
Confidence 36888899989889999999999999997 4677888875 3454 57899999999876
No 372
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.10 E-value=0.029 Score=50.55 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=31.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
.+|.|||+|..|...|..+++.|++|+++|.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999998764
No 373
>PLN02507 glutathione reductase
Probab=94.98 E-value=0.036 Score=54.20 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=32.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~ 92 (381)
..+|+|||+|.+|+..|..|++.|.+|+|+++.+.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 358999999999999999999999999999987653
No 374
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.96 E-value=0.019 Score=53.75 Aligned_cols=60 Identities=23% Similarity=0.263 Sum_probs=42.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCC-------------CceEEEeccccCCceeeeeeCCCCCeeecceeeeccCCccHHH
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAG-------------HKPLLLEARDVLGGKIAAWKDGDGDWYETGLHIFFGAYPNIQN 123 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g-------------~~v~~~e~~~~~gg~~~~~~~~~g~~~d~G~~~~~~~~~~~~~ 123 (381)
..+++|+|||++|...|..|++.- .+|+++|+.+++--.... .......+
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~-----------------~l~~~a~~ 217 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPP-----------------KLSKYAER 217 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCH-----------------HHHHHHHH
Confidence 357999999999999999998741 288999987764422211 11234677
Q ss_pred HHHHhCCCcc
Q 016871 124 LFGELGINDR 133 (381)
Q Consensus 124 l~~~~gl~~~ 133 (381)
.++++|++..
T Consensus 218 ~L~~~GV~v~ 227 (405)
T COG1252 218 ALEKLGVEVL 227 (405)
T ss_pred HHHHCCCEEE
Confidence 8888998743
No 375
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.95 E-value=0.061 Score=42.47 Aligned_cols=34 Identities=32% Similarity=0.366 Sum_probs=30.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCc-eEEEecc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEAR 89 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~ 89 (381)
....++|||+|-+|-++++.|.+.|.+ |+|+.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 567999999999999999999999986 9999764
No 376
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.83 E-value=0.04 Score=49.88 Aligned_cols=33 Identities=36% Similarity=0.323 Sum_probs=30.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.+|.|||+|..|...|..|++.|++|+++|.++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 579999999999999999999999999999864
No 377
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.82 E-value=0.044 Score=49.90 Aligned_cols=34 Identities=32% Similarity=0.217 Sum_probs=31.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.++|+|||+|..|...|+.|++.|++|+++.+..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 4689999999999999999999999999999863
No 378
>PRK04148 hypothetical protein; Provisional
Probab=94.75 E-value=0.04 Score=43.03 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=30.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
..++++||.| .|.+.|..|++.|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3689999999 999999999999999999997664
No 379
>PRK06116 glutathione reductase; Validated
Probab=94.74 E-value=0.048 Score=52.70 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=32.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~ 92 (381)
..+|+|||+|.+|+.+|..|++.|.+|+++++.+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 468999999999999999999999999999987654
No 380
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.72 E-value=0.045 Score=49.75 Aligned_cols=31 Identities=42% Similarity=0.519 Sum_probs=29.4
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEecc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
+|.|||+|..|...|..|++.|++|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 6999999999999999999999999999984
No 381
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.72 E-value=0.056 Score=46.01 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=31.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...|+|||||.+|..-+..|.+.|.+|+|+....
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4699999999999999999999999999997643
No 382
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.71 E-value=0.044 Score=49.59 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=31.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
.+|.|||+|..|...|..|++.|++|+++|.++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998653
No 383
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.64 E-value=0.062 Score=45.67 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEecc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
....|+|||||-.|...|..|.+.|.+|+|++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999999999999999999999999754
No 384
>PRK10262 thioredoxin reductase; Provisional
Probab=94.64 E-value=0.053 Score=49.75 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...+|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 35689999999999999999999999999999865
No 385
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.62 E-value=0.048 Score=49.61 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=29.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEec
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEA 88 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~ 88 (381)
++|.|||+|..|...|..|++.|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999987
No 386
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.61 E-value=0.048 Score=54.13 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=32.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
...+|+|||||.+|+..|..|++.|.+|+++++.+.
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 356899999999999999999999999999998764
No 387
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.61 E-value=0.066 Score=43.46 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=29.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEe
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLE 87 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e 87 (381)
....|+|||||-.|..-|..|.+.|++|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 46789999999999999999999999999994
No 388
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.60 E-value=0.036 Score=41.49 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=30.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEecc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
....|+|||||..|..-+..|.+.|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4678999999999999999999999999999876
No 389
>PLN02546 glutathione reductase
Probab=94.53 E-value=0.054 Score=53.60 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=33.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLG 93 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~g 93 (381)
..+|+|||||.+|+..|..|++.|.+|+|+|+.+.+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il 288 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL 288 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc
Confidence 4599999999999999999999999999999876543
No 390
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.53 E-value=0.037 Score=49.08 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEecc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
-.+.+|+|||+|..|..+|.-+...|.+|+++|.+
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 35679999999999999999999999999999987
No 391
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.47 E-value=0.06 Score=49.08 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=29.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~ 90 (381)
++|.|||+|..|.++|+.|+..| .+|+++|.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 37999999999999999999998 5899999864
No 392
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.45 E-value=0.095 Score=55.14 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...+|+|||||.+|+-+|..+.+.|.+|+++.+++
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 45789999999999999999999999999998764
No 393
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.44 E-value=0.056 Score=48.65 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=30.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.+|.|||+|..|...|..+++.|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999999654
No 394
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.44 E-value=0.077 Score=43.53 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCh-hHHHHHHHHHHCCCceEEEecc
Q 016871 56 KPLKVVIAGAGL-AGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 56 ~~~~v~iiG~G~-~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
...+|+|||+|- .|..+|..|.+.|.+|+++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 578999999996 6999999999999999999864
No 395
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.37 E-value=0.061 Score=52.93 Aligned_cols=36 Identities=28% Similarity=0.288 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
...+|+|||||.+|+.+|..|+..+.+|+|+++.+.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 346999999999999999999999999999986543
No 396
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.36 E-value=0.053 Score=51.91 Aligned_cols=36 Identities=36% Similarity=0.417 Sum_probs=30.8
Q ss_pred CeEEEEcCChhHHHHHHHHHH--------------CCCceEEEeccccCC
Q 016871 58 LKVVIAGAGLAGLSTAKYLAD--------------AGHKPLLLEARDVLG 93 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~--------------~g~~v~~~e~~~~~g 93 (381)
.+++|||||++|+..|..|++ .+.+|+++|+.+.+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll 223 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL 223 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc
Confidence 489999999999999999975 378999999876543
No 397
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.31 E-value=0.057 Score=50.05 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.+|.|||+|..|...|..|++.|++|+++++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 579999999999999999999999999999854
No 398
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=94.31 E-value=0.12 Score=49.95 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=31.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC-ceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 90 (381)
...+|+|||+|.+|+.+|..|.+.|. +|+++++++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 45689999999999999999999998 899998753
No 399
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.23 E-value=0.059 Score=51.37 Aligned_cols=33 Identities=33% Similarity=0.517 Sum_probs=30.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
+|.|||.|..|+..|..|++.|++|++++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998653
No 400
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.19 E-value=0.034 Score=48.09 Aligned_cols=35 Identities=34% Similarity=0.563 Sum_probs=29.2
Q ss_pred eEEEEcCChhHHHHHHHHHHC--CCceEEEeccccCC
Q 016871 59 KVVIAGAGLAGLSTAKYLADA--GHKPLLLEARDVLG 93 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~--g~~v~~~e~~~~~g 93 (381)
+.+|||||++|.+||-.|+.. ..+|+++-+.+.+-
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vk 37 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVK 37 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHH
Confidence 368999999999999999975 56899998776643
No 401
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.16 E-value=0.074 Score=49.77 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=31.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...+|+|||+|.+|+.+|..|...|.+|++++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 35679999999999999999999999999999753
No 402
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.15 E-value=0.063 Score=51.15 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=31.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
.+|.|||.|..|+..|..|++.|++|+++|.++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999997653
No 403
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.15 E-value=0.079 Score=47.87 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...+|+|||+|.+|+.+|..|++.+.+|+++++.+
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 34689999999999999999999999999998743
No 404
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.11 E-value=0.085 Score=47.97 Aligned_cols=33 Identities=33% Similarity=0.480 Sum_probs=29.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-ceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 90 (381)
.+|.|||+|..|...|+.|+..|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999886 899999743
No 405
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.09 E-value=0.093 Score=47.88 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
+.++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34689999999999999999999999999999864
No 406
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.89 E-value=0.087 Score=51.09 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=32.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...+|+|+|+|.+|+.++..+...|.+|+++|.++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46789999999999999999999999999998765
No 407
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.82 E-value=0.09 Score=48.06 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=30.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.+|.|||+|..|.+.|..|++.|++|++++.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 479999999999999999999999999999754
No 408
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.78 E-value=0.1 Score=48.05 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=31.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.++|.|||+|..|...|..|++.|++|++++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4589999999999999999999999999999864
No 409
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.75 E-value=0.11 Score=39.57 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=28.5
Q ss_pred EEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 60 v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
|+|+|.|..|...|..|.+.+.+|+++|.++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999997779999999764
No 410
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.67 E-value=0.11 Score=44.04 Aligned_cols=36 Identities=36% Similarity=0.386 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC-ceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~ 91 (381)
...+|+|||+|-.|..+|..|++.|. +++++|....
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV 56 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 46789999999999999999999998 6999998644
No 411
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.65 E-value=0.11 Score=46.96 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=30.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.+|.|||+|..|...|..|++.|++|+++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999765
No 412
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.65 E-value=0.096 Score=48.23 Aligned_cols=32 Identities=28% Similarity=0.241 Sum_probs=30.0
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
+|.|||+|..|...|..|++.|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999999854
No 413
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.61 E-value=0.099 Score=49.67 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=33.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVL 92 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~ 92 (381)
.++|+|+|-|.+|+++|..|.+.|.+|++.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 678999999999999999999999999999977665
No 414
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=93.49 E-value=0.22 Score=48.45 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=28.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC-ceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 90 (381)
...+|+|||+|.+|+.+|..+.+.|. +|++++...
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~ 315 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP 315 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence 35689999999999999999888885 788666433
No 415
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.47 E-value=0.1 Score=46.91 Aligned_cols=32 Identities=34% Similarity=0.407 Sum_probs=29.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
+|.|||.|..|.+.|..|.+.|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999764
No 416
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.36 E-value=0.12 Score=47.59 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=30.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
++|.|||+|..|...|..|++.|++|+++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999999864
No 417
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=93.33 E-value=0.12 Score=51.23 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=42.1
Q ss_pred HHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCCCc
Q 016871 282 IQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPEN 338 (381)
Q Consensus 282 l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~~~ 338 (381)
.+++|++++++.+|+.|..+ + +. |++..|.++.+|++|+||+++.+..=+|..
T Consensus 69 y~~~~i~L~~~~~v~~idr~-~-k~--V~t~~g~~~~YDkLilATGS~pfi~PiPG~ 121 (793)
T COG1251 69 YEENGITLYTGEKVIQIDRA-N-KV--VTTDAGRTVSYDKLIIATGSYPFILPIPGS 121 (793)
T ss_pred HHHcCcEEEcCCeeEEeccC-c-ce--EEccCCcEeecceeEEecCccccccCCCCC
Confidence 47789999999999999872 3 33 889999999999999999987443335543
No 418
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.29 E-value=0.14 Score=48.33 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
....|+|+|+|..|+.+|..+...|.+|+++|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 45689999999999999999999999999998765
No 419
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=93.23 E-value=0.28 Score=47.83 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=30.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCC-CceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~ 91 (381)
....|+|||||..|+.+|..+.+.| .+|+++|..+.
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4568999999999999998888877 57999987654
No 420
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.20 E-value=0.14 Score=49.93 Aligned_cols=34 Identities=38% Similarity=0.572 Sum_probs=31.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
-.+|.|||+|..|...|..+++.|++|+++|+++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4579999999999999999999999999999874
No 421
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.19 E-value=0.13 Score=47.87 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=30.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC-CceEEEecc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAG-HKPLLLEAR 89 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~ 89 (381)
.+|+|||+|-.|..+|+.|+++| .+|++.++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 58999999999999999999998 899999988
No 422
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=93.17 E-value=0.057 Score=49.35 Aligned_cols=41 Identities=29% Similarity=0.502 Sum_probs=37.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccccCCcee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKI 96 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~~gg~~ 96 (381)
-+.+.+|||||+.||..+..-.+.|.+|+++|-.+.+||..
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m 250 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM 250 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc
Confidence 35689999999999999999999999999999999888764
No 423
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.16 E-value=0.13 Score=49.69 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=29.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCC--CceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~ 90 (381)
++|.|||+|..|+..|..|++.| ++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 57999999999999999999984 7899998654
No 424
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.15 E-value=0.13 Score=49.85 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=31.2
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
..+|.|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 3579999999999999999999999999999764
No 425
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.11 E-value=0.16 Score=41.58 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=28.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.+|.|||-|..|...|..|.+.|++|.++++++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 579999999999999999999999999999764
No 426
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.11 E-value=0.17 Score=39.84 Aligned_cols=37 Identities=38% Similarity=0.384 Sum_probs=31.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-ceEEEeccccCC
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLG 93 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~~g 93 (381)
+.+|+|||+|-.|..+|..|++.|. +++|+|....--
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~ 39 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEP 39 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceee
Confidence 4689999999999999999999997 799999765433
No 427
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.10 E-value=0.15 Score=49.18 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=31.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
...|+|+|.|-+|+++|..|+++|++|++.|....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 45899999999999999999999999999997654
No 428
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=93.07 E-value=0.18 Score=42.78 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=31.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
....++|+|.|-.|..+|..|.+.|++|++.|.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45689999999999999999999999999998753
No 429
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.02 E-value=0.13 Score=48.44 Aligned_cols=31 Identities=32% Similarity=0.565 Sum_probs=27.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
+|.|||.|..|+..|..++. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 69999999999999987775 99999999765
No 430
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.02 E-value=0.14 Score=49.74 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=31.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...|+|+|.|.+|.++|..|.+.|.+|++.|.+.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 4579999999999999999999999999999654
No 431
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.00 E-value=0.14 Score=49.37 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=30.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...++|+|+|-+|+++|..|++.|++|++.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999654
No 432
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.00 E-value=0.17 Score=44.80 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=36.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCC-CceEEEeccccCCceeee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARDVLGGKIAA 98 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~~~gg~~~~ 98 (381)
....|+|||+|-.|..+|..|++.| .+++|+|.....-....+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnR 72 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNR 72 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEeccccccc
Confidence 4679999999999999999999999 589999987765555443
No 433
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.96 E-value=0.13 Score=50.14 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=30.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999764
No 434
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.82 E-value=0.15 Score=49.69 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=30.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEecc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
...|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 457999999999999999999999999999965
No 435
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.82 E-value=0.12 Score=48.25 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=37.3
Q ss_pred HHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHH
Q 016871 278 IVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDI 330 (381)
Q Consensus 278 l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~ 330 (381)
+.+.+++.|++++.+ .|++|+.+ +. . |.+.+|+++.+|++|+|||+..
T Consensus 60 ~~~~~~~~gv~~~~~-~v~~id~~-~~-~--V~~~~g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 60 LRRLARQAGARFVIA-EATGIDPD-RR-K--VLLANRPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHHHHHhcCCEEEEE-EEEEEecc-cC-E--EEECCCCcccccEEEEccCCCC
Confidence 445566779998764 79999873 32 3 7788888899999999999763
No 436
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.78 E-value=0.25 Score=39.31 Aligned_cols=33 Identities=36% Similarity=0.572 Sum_probs=29.2
Q ss_pred CeEEEEcC-ChhHHHHHHHHHHCC--CceEEEeccc
Q 016871 58 LKVVIAGA-GLAGLSTAKYLADAG--HKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~-G~~G~~~a~~l~~~g--~~v~~~e~~~ 90 (381)
.+|.|||+ |..|.+.|+.|...+ .++.++|.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 999999999999986 4799999864
No 437
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.72 E-value=0.15 Score=40.16 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=27.3
Q ss_pred EEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 60 VVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 60 v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
++|+|+|..+.+.|..+...|++|+|+|-++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999874
No 438
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.70 E-value=0.15 Score=46.08 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=32.7
Q ss_pred CCCCCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 52 PRPSKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 52 ~~~~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
-++-...||+|||||-+|..||.-|+---..|+++|=.+
T Consensus 349 GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 349 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 345578899999999999999999997666899998543
No 439
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.69 E-value=0.19 Score=43.32 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=29.4
Q ss_pred CeEEEEc-CChhHHHHHHHHHHCCCceEEEeccc
Q 016871 58 LKVVIAG-AGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
++|.||| +|..|.+.|..|++.|++|+++.+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 3699997 79999999999999999999997754
No 440
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.65 E-value=0.16 Score=49.15 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=31.6
Q ss_pred CCCeEEEEcCChhHHH-HHHHHHHCCCceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLS-TAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~-~a~~l~~~g~~v~~~e~~~~ 91 (381)
....|.|||.|-+|++ +|..|.+.|++|++.|.+..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 4457999999999999 69999999999999997643
No 441
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=92.61 E-value=0.2 Score=45.07 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC-ceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 90 (381)
...+|+|||+|-+|.++|+.|++.|. +|+|+++..
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 34689999999999999999999997 799998753
No 442
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.60 E-value=0.29 Score=35.09 Aligned_cols=33 Identities=45% Similarity=0.578 Sum_probs=29.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHC-CCceEEEec
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADA-GHKPLLLEA 88 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~-g~~v~~~e~ 88 (381)
...+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 456899999999999999999998 678999987
No 443
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=92.59 E-value=0.21 Score=43.23 Aligned_cols=35 Identities=34% Similarity=0.654 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC---ceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGH---KPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~---~v~~~e~~~ 90 (381)
.+.+++|+|+|-+|..+|..|.+.|. +|.++++..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 45689999999999999999999996 599999863
No 444
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=92.48 E-value=0.2 Score=45.59 Aligned_cols=32 Identities=41% Similarity=0.578 Sum_probs=29.3
Q ss_pred eEEEEcCChhHHHHHHHHHHCC--CceEEEeccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAG--HKPLLLEARD 90 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g--~~v~~~e~~~ 90 (381)
+|+|||+|..|.++|+.|+..| .+++++|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 7999999999999999999998 5899999854
No 445
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.47 E-value=0.22 Score=45.14 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=32.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...+++|||.|.+|..+|..|...|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46799999999999999999999999999998874
No 446
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.47 E-value=0.2 Score=48.60 Aligned_cols=35 Identities=31% Similarity=0.478 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...+|+|+|+|..|+.++..+...|.+|+++|.+.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35789999999999999999999999999999765
No 447
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=92.43 E-value=0.28 Score=47.40 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...+|+|||+|.+|+-.|..|++.+.+|+++.+..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 56799999999999999999999999999998764
No 448
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.43 E-value=0.24 Score=45.13 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=29.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC--ceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~ 90 (381)
..+|.|||+|..|.++|+.|+..|. ++.++|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4699999999999999999998874 799999754
No 449
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=92.42 E-value=0.23 Score=48.65 Aligned_cols=35 Identities=40% Similarity=0.509 Sum_probs=31.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
-..|.|||+|..|...|..|++.|+.|+++|.++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999997664
No 450
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.39 E-value=0.16 Score=42.91 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
.....|.|||||..|.-.|...+..|+.|.+++++..
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 4566899999999999999999999999999998764
No 451
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.16 E-value=0.24 Score=44.60 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
....++|||.|-.|.++|..|...|.+|++++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35689999999999999999999999999998864
No 452
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=92.16 E-value=0.18 Score=51.62 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=31.5
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
..|.|||+|..|...|..++..|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998763
No 453
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.06 E-value=0.25 Score=45.07 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=29.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCC-ceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 90 (381)
.+|+|||+|..|...|+.++..|. +|+++|.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 589999999999999999999875 999999754
No 454
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=92.04 E-value=0.13 Score=47.61 Aligned_cols=64 Identities=23% Similarity=0.245 Sum_probs=50.0
Q ss_pred CccchHHHHHHHHhcCCEEEecceeeEEEEcCCCCEEEEEEeCCeEEEecEEEEccCHHHHhccCC
Q 016871 271 PERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLP 336 (381)
Q Consensus 271 ~~~l~~~l~~~l~~~G~~i~~~t~V~~I~~~~~~~~~~V~t~~G~~i~ad~VI~A~~~~~~~~Ll~ 336 (381)
|..|.+.-.+.+++.||.++-|+.|.++.....+ + .++.++|.+++.|+||+|+|-.....|..
T Consensus 392 Peyls~wt~ekir~~GV~V~pna~v~sv~~~~~n-l-~lkL~dG~~l~tD~vVvavG~ePN~ela~ 455 (659)
T KOG1346|consen 392 PEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKN-L-VLKLSDGSELRTDLVVVAVGEEPNSELAE 455 (659)
T ss_pred HHHHHHHHHHHHHhcCceeccchhhhhhhhhccc-e-EEEecCCCeeeeeeEEEEecCCCchhhcc
Confidence 4556666677778889999999999999874444 3 38899999999999999998665555543
No 455
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.95 E-value=0.29 Score=44.88 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=31.0
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-ceEEEecccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~ 91 (381)
..+|+|||+|..|..+|+.++..|. +|+++|.++.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3689999999999999999999995 8999997654
No 456
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.93 E-value=0.2 Score=51.20 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=31.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
-..|.|||||..|...|..++..|++|+++|.+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3479999999999999999999999999999765
No 457
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.92 E-value=0.4 Score=51.05 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=30.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC-ceEEEecccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~ 91 (381)
..+|+|||+|..|+.+|..|++.|. .|+|+|.++.
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~ 352 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARAD 352 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcc
Confidence 4689999999999999999999995 6889987754
No 458
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=91.90 E-value=0.081 Score=49.10 Aligned_cols=34 Identities=41% Similarity=0.498 Sum_probs=29.1
Q ss_pred CeEEEEcCChhHHHHHHHHHHC--------------CCceEEEecccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADA--------------GHKPLLLEARDV 91 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~--------------g~~v~~~e~~~~ 91 (381)
-.+||||||++|...|..|+.- -.+|+++|+.+.
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 4799999999999999999762 358999999874
No 459
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.84 E-value=0.32 Score=41.03 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.2
Q ss_pred CCCeEEEEcC-ChhHHHHHHHHHHCCCceEEEecc
Q 016871 56 KPLKVVIAGA-GLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 56 ~~~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
...+++|+|| |..|..+|..|++.|++|+++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999997 999999999999999999999764
No 460
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.76 E-value=0.28 Score=45.31 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=32.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC-ceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~ 91 (381)
...+|+|||+|-.|..+|..|++.|. +++++|....
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 46789999999999999999999998 8999998644
No 461
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.74 E-value=0.29 Score=46.13 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
....|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 45699999999999999999999999999999765
No 462
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=91.73 E-value=0.3 Score=39.50 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=29.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
....++|+|=|..|-.+|..|+..|.+|+|.|..+.
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 467899999999999999999999999999998764
No 463
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.56 E-value=0.29 Score=45.18 Aligned_cols=36 Identities=33% Similarity=0.425 Sum_probs=32.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC-ceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~ 91 (381)
...+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v 59 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV 59 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 45689999999999999999999997 8999998654
No 464
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.56 E-value=0.24 Score=45.02 Aligned_cols=34 Identities=38% Similarity=0.481 Sum_probs=30.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
++|.|+|+|..|...|+.|++.|..|+++=+.+.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 4799999999999999999999988888877663
No 465
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.51 E-value=0.3 Score=47.52 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEecc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
...|.|+|.|-+|+++|..|.+.|++|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 457999999999999999999999999999964
No 466
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=91.48 E-value=0.26 Score=44.46 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=31.1
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
-..|.|||||..|-..|..++..|+.|+++|.++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 3579999999999999999999889999999874
No 467
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.46 E-value=0.36 Score=42.37 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=33.2
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
.....++|+|+|..+...|..+...|++|+|+|-++.
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 3567999999999999999999999999999997654
No 468
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.45 E-value=0.22 Score=44.97 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=29.7
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999999764
No 469
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.26 E-value=0.29 Score=47.33 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=31.0
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
++|+|+|+|..|...|..|.+.|++|+++|++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 3799999999999999999999999999998553
No 470
>PTZ00117 malate dehydrogenase; Provisional
Probab=91.23 E-value=0.38 Score=44.09 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCC-CceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~ 90 (381)
+..+|+|||+|..|.+.|+.|+..| ..++++|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4569999999999999999999988 6899999754
No 471
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=91.19 E-value=0.4 Score=38.58 Aligned_cols=35 Identities=37% Similarity=0.369 Sum_probs=30.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCC-CceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~ 90 (381)
...+++|||+|..|.+.|..|.+.| .+|++++++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3568999999999999999999985 7899998753
No 472
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.17 E-value=0.27 Score=47.49 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.+--|+|||.|-+|+++|..|.+.|++|++.|...
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 34569999999999999999999999999999754
No 473
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=91.15 E-value=0.38 Score=42.98 Aligned_cols=34 Identities=26% Similarity=0.259 Sum_probs=30.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEecc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
....++|+|+|-+|.++|+.|++.|.+|+++.++
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3568999999999999999999999999999865
No 474
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.14 E-value=0.32 Score=46.49 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=30.4
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
.+|+|||-|.+|+++|..|.+.|++|++.|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999754
No 475
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.13 E-value=0.37 Score=40.92 Aligned_cols=36 Identities=36% Similarity=0.471 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC-ceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~ 91 (381)
....|+|||.|-.|..+|..|++.|. +++++|....
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 46799999999999999999999997 8999987543
No 476
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.10 E-value=0.26 Score=50.50 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=31.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
-..|.|||+|..|...|..++..|++|+++|.++.
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 34699999999999999999999999999997653
No 477
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.10 E-value=0.27 Score=47.44 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=28.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEecc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
..+|+|+|.|.+|.++|..|.+ |.+|++.|.+
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 4589999999999999999995 9999999954
No 478
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.09 E-value=0.31 Score=47.78 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
...|.|+|.|-+|+++|..|.+.|++|++.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999754
No 479
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.07 E-value=0.36 Score=45.34 Aligned_cols=35 Identities=37% Similarity=0.382 Sum_probs=31.9
Q ss_pred CCCeEEEEc-CChhHHHHHHHHHHCCCceEEEeccc
Q 016871 56 KPLKVVIAG-AGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG-~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
....|.||| .|..|-+.|..|.+.|+.|+++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 557899999 89999999999999999999999754
No 480
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.04 E-value=0.38 Score=39.78 Aligned_cols=33 Identities=42% Similarity=0.403 Sum_probs=29.6
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-ceEEEecccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~ 91 (381)
+|+|||+|-.|..+|..|++.|. +++++|....
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 48999999999999999999998 5999998654
No 481
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=90.99 E-value=0.51 Score=44.30 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=31.8
Q ss_pred CCCCeEEEEcC-ChhHHHHHHHHHHCCCceEEEecc
Q 016871 55 SKPLKVVIAGA-GLAGLSTAKYLADAGHKPLLLEAR 89 (381)
Q Consensus 55 ~~~~~v~iiG~-G~~G~~~a~~l~~~g~~v~~~e~~ 89 (381)
...++|+|.|| |..|...+..|.++|++|+.+.+.
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 35678999998 999999999999999999999864
No 482
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.98 E-value=0.43 Score=43.07 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=30.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCc-eEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHK-PLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~-v~~~e~~~ 90 (381)
....++|+|||=+|.++|+.|++.|.+ |+|+.++.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 346899999999999999999999986 99998753
No 483
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.96 E-value=0.43 Score=43.63 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=30.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHCCC--ceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~ 90 (381)
..+|.|||+|-.|.++|+.|+..|. ++.++|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4699999999999999999999886 799999754
No 484
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=90.83 E-value=0.3 Score=44.34 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=28.0
Q ss_pred EEEEcCChhHHHHHHHHHHCCC-ceEEEeccc
Q 016871 60 VVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (381)
Q Consensus 60 v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 90 (381)
|.|||+|..|..+|+.|+..|. +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999998876 999999864
No 485
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=90.82 E-value=0.4 Score=45.49 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
....|+|+|.|..|..+|..|...|.+|+++|..+.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 456899999999999999999999999999997653
No 486
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=90.80 E-value=0.19 Score=39.02 Aligned_cols=36 Identities=39% Similarity=0.508 Sum_probs=28.8
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
....+|.|||+|-.|.+.|..|.+.|+.|.-+..+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 467899999999999999999999999998776543
No 487
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=90.78 E-value=0.78 Score=44.17 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 55 SKPLKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 55 ~~~~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
-..++|+|||+|.+|.-.|..|++.|.+|+++-+++.
T Consensus 173 ~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 173 LRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred cCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 3567999999999999999999999999999987543
No 488
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.67 E-value=0.43 Score=37.97 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=30.9
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC-ceEEEeccccCCc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGG 94 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~~gg 94 (381)
+|+|||+|-.|...|..|++.|. +++++|....--.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~ 37 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELS 37 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcc
Confidence 48999999999999999999997 7999997655333
No 489
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=90.65 E-value=0.36 Score=43.78 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=30.1
Q ss_pred eEEEEcCChhHHHHHHHHHHCCCceEEEeccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGHKPLLLEARD 90 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~ 90 (381)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 79999999999999999999999999998864
No 490
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.64 E-value=0.43 Score=48.43 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC-ceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~ 90 (381)
...+|+|||+|.+|+.+|..+.+.|. +|+|+++++
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46799999999999999999999986 699998765
No 491
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=90.58 E-value=0.3 Score=43.71 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=32.1
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHHHC-C-CceEEEecccc
Q 016871 54 PSKPLKVVIAGAGLAGLSTAKYLADA-G-HKPLLLEARDV 91 (381)
Q Consensus 54 ~~~~~~v~iiG~G~~G~~~a~~l~~~-g-~~v~~~e~~~~ 91 (381)
....++|+|||||.+|++.|..+.++ | -+|.|+|-.+.
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 34789999999999999999999876 4 38999997653
No 492
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=90.49 E-value=0.51 Score=41.29 Aligned_cols=42 Identities=33% Similarity=0.446 Sum_probs=34.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC-ceEEEeccccCCceee
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDVLGGKIA 97 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~~gg~~~ 97 (381)
...+|+|||+|-.|..+|..|++.|. +++++|....--....
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~ 65 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQ 65 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcc
Confidence 45799999999999999999999996 8899987665444333
No 493
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.45 E-value=0.4 Score=43.58 Aligned_cols=32 Identities=28% Similarity=0.535 Sum_probs=28.2
Q ss_pred eEEEEcCChhHHHHHHHHHHCCC--ceEEEeccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAGH--KPLLLEARD 90 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g~--~v~~~e~~~ 90 (381)
+|.|||+|..|.++|+.|...+. +++++|.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 58999999999999999998875 799999753
No 494
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.31 E-value=0.5 Score=40.45 Aligned_cols=36 Identities=42% Similarity=0.362 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCCC-ceEEEecccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAGH-KPLLLEARDV 91 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g~-~v~~~e~~~~ 91 (381)
....|+|||+|-.|..+|..|++.|. +++++|....
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 46789999999999999999999997 5999998654
No 495
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.28 E-value=0.51 Score=42.34 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHCC-CceEEEeccc
Q 016871 56 KPLKVVIAGAGLAGLSTAKYLADAG-HKPLLLEARD 90 (381)
Q Consensus 56 ~~~~v~iiG~G~~G~~~a~~l~~~g-~~v~~~e~~~ 90 (381)
....++|+|+|-+|.++|+.|++.| .+|+|+.++.
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4568999999999999999999999 7899998753
No 496
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.27 E-value=0.35 Score=49.50 Aligned_cols=34 Identities=29% Similarity=0.246 Sum_probs=30.7
Q ss_pred CCeEEEEcCChhHHHHHHHHH-HCCCceEEEeccc
Q 016871 57 PLKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARD 90 (381)
Q Consensus 57 ~~~v~iiG~G~~G~~~a~~l~-~~g~~v~~~e~~~ 90 (381)
-..|.|||+|..|...|..++ ..|+.|+++|.++
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 357999999999999999998 8899999999864
No 497
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=90.26 E-value=0.37 Score=49.22 Aligned_cols=33 Identities=33% Similarity=0.309 Sum_probs=30.1
Q ss_pred CeEEEEcCChhHHHHHHHHH-HCCCceEEEeccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLA-DAGHKPLLLEARD 90 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~-~~g~~v~~~e~~~ 90 (381)
..|.|||+|..|...|..++ +.|++|+++|.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 47999999999999999988 5899999999875
No 498
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.19 E-value=0.57 Score=34.20 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=27.5
Q ss_pred eEEEEcCChhHHHHHHHHHHCC---CceEEE-eccc
Q 016871 59 KVVIAGAGLAGLSTAKYLADAG---HKPLLL-EARD 90 (381)
Q Consensus 59 ~v~iiG~G~~G~~~a~~l~~~g---~~v~~~-e~~~ 90 (381)
+|.|||+|-.|.+.+..|.+.| .+|.++ ++++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 5889999999999999999999 888866 6543
No 499
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=90.17 E-value=0.49 Score=39.82 Aligned_cols=53 Identities=26% Similarity=0.362 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCEEEecceeeEEEEcCCCC---EEEE---EEeCCeEEEecEEEEccCHH
Q 016871 277 PIVEHIQSLGGEVRLNSRVQKIELNDDGT---VKNF---LLTNGNVIDGDAYVFATPVD 329 (381)
Q Consensus 277 ~l~~~l~~~G~~i~~~t~V~~I~~~~~~~---~~~V---~t~~G~~i~ad~VI~A~~~~ 329 (381)
.+.+.+...++++++++.|.+|....... .+.+ .+.++.++.||+||+|+|..
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccc
Confidence 46666667789999999999998743310 1112 33455689999999999966
No 500
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=90.14 E-value=0.37 Score=46.59 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=31.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHCCCceEEEecccc
Q 016871 58 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDV 91 (381)
Q Consensus 58 ~~v~iiG~G~~G~~~a~~l~~~g~~v~~~e~~~~ 91 (381)
.+|.|||.|..|.+.|..|+++|++|++++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4899999999999999999999999999998654
Done!