Query 016873
Match_columns 381
No_of_seqs 110 out of 1137
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:34:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 4.2E-51 9.1E-56 401.1 25.2 329 1-370 108-437 (437)
2 KOG1304 Amino acid transporter 100.0 1.4E-48 3.1E-53 377.6 20.3 313 5-367 131-449 (449)
3 PTZ00206 amino acid transporte 100.0 7.1E-48 1.5E-52 386.9 20.2 339 1-368 124-465 (467)
4 PLN03074 auxin influx permease 100.0 5.2E-44 1.1E-48 358.0 24.5 324 2-381 124-465 (473)
5 PF01490 Aa_trans: Transmembra 100.0 6.5E-43 1.4E-47 346.3 -2.9 333 1-364 71-408 (409)
6 KOG1305 Amino acid transporter 100.0 3E-34 6.5E-39 280.6 18.9 333 2-370 71-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 2.2E-35 4.7E-40 271.1 3.3 329 2-373 189-520 (524)
8 COG0814 SdaC Amino acid permea 99.9 4.9E-21 1.1E-25 189.6 23.3 323 1-363 75-411 (415)
9 TIGR00837 araaP aromatic amino 99.6 1.2E-14 2.6E-19 143.1 18.6 285 2-335 63-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 99.4 1.7E-11 3.6E-16 120.9 22.1 285 2-337 69-367 (394)
11 PRK10483 tryptophan permease; 99.3 2.6E-10 5.7E-15 112.0 20.8 281 2-335 77-373 (414)
12 PRK15132 tyrosine transporter 99.3 3.2E-10 6.9E-15 111.7 21.4 303 2-357 69-389 (403)
13 PRK09664 tryptophan permease T 99.2 1.3E-09 2.7E-14 107.2 20.7 285 2-335 75-374 (415)
14 TIGR00814 stp serine transport 99.1 4.6E-09 1E-13 103.6 15.9 295 2-333 70-377 (397)
15 PRK13629 threonine/serine tran 98.9 2.3E-07 4.9E-12 91.7 21.7 321 2-355 86-434 (443)
16 PRK11021 putative transporter; 98.5 0.0001 2.2E-09 73.4 25.1 64 139-205 175-240 (410)
17 PRK10746 putative transport pr 98.4 9.4E-05 2E-09 74.8 24.4 61 139-202 198-258 (461)
18 PRK10655 potE putrescine trans 98.4 0.0001 2.2E-09 74.0 24.5 57 141-200 189-245 (438)
19 PRK10644 arginine:agmatin anti 98.4 6E-05 1.3E-09 75.9 22.6 56 140-198 190-245 (445)
20 TIGR00909 2A0306 amino acid tr 98.4 0.00016 3.4E-09 72.4 24.9 174 3-200 72-251 (429)
21 PRK10238 aromatic amino acid t 98.4 9.6E-05 2.1E-09 74.7 22.4 167 4-195 82-251 (456)
22 TIGR03810 arg_ornith_anti argi 98.4 0.00016 3.6E-09 73.2 24.2 60 141-204 195-254 (468)
23 PRK10197 gamma-aminobutyrate t 98.3 0.00014 3E-09 73.3 23.1 57 139-198 179-235 (446)
24 PRK10249 phenylalanine transpo 98.3 0.00022 4.7E-09 72.2 24.3 57 139-198 207-263 (458)
25 TIGR00906 2A0303 cationic amin 98.3 0.00014 3.1E-09 75.2 23.0 183 4-199 99-286 (557)
26 TIGR00905 2A0302 transporter, 98.3 0.00028 6E-09 71.6 24.6 176 3-200 78-254 (473)
27 TIGR00913 2A0310 amino acid pe 98.3 0.00047 1E-08 70.0 26.1 56 140-198 196-251 (478)
28 TIGR01773 GABAperm gamma-amino 98.3 0.00025 5.4E-09 71.5 23.6 62 140-204 200-261 (452)
29 PRK10435 cadB lysine/cadaverin 98.3 0.00023 4.9E-09 71.5 22.9 62 139-203 185-246 (435)
30 PRK10580 proY putative proline 98.3 0.00042 9.1E-09 70.0 24.9 56 140-198 198-253 (457)
31 PRK15049 L-asparagine permease 98.3 0.00033 7.1E-09 71.6 24.1 62 139-203 218-279 (499)
32 TIGR00908 2A0305 ethanolamine 98.3 0.00021 4.5E-09 71.8 22.4 168 4-197 77-244 (442)
33 PRK11049 D-alanine/D-serine/gl 98.2 0.00042 9E-09 70.3 23.9 59 139-200 209-267 (469)
34 PRK11357 frlA putative fructos 98.2 0.0004 8.6E-09 69.9 21.9 56 140-198 194-249 (445)
35 PF13520 AA_permease_2: Amino 98.2 0.00012 2.5E-09 73.1 17.6 176 4-205 68-247 (426)
36 PRK11387 S-methylmethionine tr 98.1 0.00058 1.3E-08 69.3 22.7 57 140-199 205-261 (471)
37 TIGR03813 put_Glu_GABA_T putat 98.1 0.00096 2.1E-08 67.7 23.7 53 149-204 202-254 (474)
38 COG1113 AnsP Gamma-aminobutyra 98.1 0.00024 5.2E-09 69.9 18.0 293 2-334 81-388 (462)
39 TIGR00930 2a30 K-Cl cotranspor 98.0 0.0023 5E-08 70.1 26.1 184 3-197 148-333 (953)
40 TIGR00910 2A0307_GadC glutamat 98.0 0.0017 3.8E-08 66.4 23.2 51 144-197 197-247 (507)
41 TIGR00907 2A0304 amino acid pe 98.0 0.0037 8E-08 63.6 24.3 52 141-195 217-268 (482)
42 TIGR00911 2A0308 L-type amino 97.9 0.0014 3E-08 67.0 21.3 57 140-199 234-290 (501)
43 COG0531 PotE Amino acid transp 97.9 0.0032 7E-08 63.3 22.2 179 4-205 82-262 (466)
44 KOG1287 Amino acid transporter 97.9 0.0012 2.5E-08 66.0 17.9 293 6-340 86-391 (479)
45 PRK10836 lysine transporter; P 97.8 0.0085 1.9E-07 61.1 24.8 60 140-202 204-263 (489)
46 TIGR03428 ureacarb_perm permea 97.7 0.054 1.2E-06 55.0 27.1 55 141-198 213-267 (475)
47 PRK15238 inner membrane transp 97.6 0.03 6.5E-07 57.2 25.0 55 141-198 211-265 (496)
48 TIGR00912 2A0309 spore germina 97.5 0.0041 9E-08 60.6 16.3 172 2-208 68-242 (359)
49 PF00324 AA_permease: Amino ac 96.9 0.0042 9.1E-08 63.1 9.2 64 139-205 198-261 (478)
50 TIGR00800 ncs1 NCS1 nucleoside 96.9 0.11 2.3E-06 52.4 19.0 190 2-209 80-276 (442)
51 TIGR02358 thia_cytX probable h 96.6 0.31 6.8E-06 48.2 19.5 170 3-205 63-233 (386)
52 COG1457 CodB Purine-cytosine p 96.6 0.33 7.1E-06 48.5 19.4 172 1-207 84-258 (442)
53 PF03845 Spore_permease: Spore 96.4 0.023 5E-07 54.5 10.4 172 2-208 66-238 (320)
54 PRK11375 allantoin permease; P 96.3 0.92 2E-05 46.3 21.4 43 3-45 94-137 (484)
55 KOG1286 Amino acid transporter 95.8 0.44 9.5E-06 49.3 16.1 111 140-253 231-350 (554)
56 KOG1289 Amino acid transporter 95.0 2.6 5.7E-05 42.9 18.3 66 139-207 250-315 (550)
57 TIGR02119 panF sodium/pantothe 94.6 5.7 0.00012 40.2 20.6 78 2-93 111-189 (471)
58 PRK11017 codB cytosine permeas 93.6 2.5 5.5E-05 42.0 15.0 74 2-90 75-148 (404)
59 COG3949 Uncharacterized membra 93.4 4.6 0.0001 38.7 15.3 43 2-44 70-112 (349)
60 PRK09442 panF sodium/panthothe 93.1 11 0.00024 38.3 23.5 78 2-93 112-190 (483)
61 COG0833 LysP Amino acid transp 92.8 13 0.00027 38.2 19.2 247 60-333 159-426 (541)
62 COG0591 PutP Na+/proline sympo 92.7 9.7 0.00021 39.0 17.9 76 2-91 109-185 (493)
63 PF00474 SSF: Sodium:solute sy 92.0 1.4 3E-05 43.6 10.7 79 2-94 73-153 (406)
64 TIGR00813 sss transporter, SSS 90.0 21 0.00046 35.3 18.0 79 2-94 70-149 (407)
65 PRK12488 acetate permease; Pro 87.2 40 0.00087 35.0 23.2 78 3-94 135-213 (549)
66 TIGR00796 livcs branched-chain 86.1 2.3 4.9E-05 41.9 7.0 73 2-88 259-331 (378)
67 PF01566 Nramp: Natural resist 79.2 64 0.0014 31.3 16.5 73 2-88 46-120 (358)
68 PRK15419 proline:sodium sympor 75.5 1E+02 0.0022 31.6 21.3 79 2-94 112-193 (502)
69 PF02133 Transp_cyt_pur: Perme 66.8 15 0.00032 36.8 6.5 44 2-45 75-118 (440)
70 COG1914 MntH Mn2+ and Fe2+ tra 65.9 1.5E+02 0.0033 29.7 22.2 54 282-335 325-378 (416)
71 PF05525 Branch_AA_trans: Bran 60.9 28 0.0006 34.9 7.0 73 2-88 265-337 (427)
72 TIGR02711 symport_actP cation/ 58.9 2.3E+02 0.0049 29.4 22.2 73 5-91 137-210 (549)
73 KOG4812 Golgi-associated prote 57.1 25 0.00054 32.0 5.3 77 292-372 163-255 (262)
74 TIGR00796 livcs branched-chain 55.2 2.2E+02 0.0048 28.1 17.4 44 156-202 196-243 (378)
75 PRK13183 psbN photosystem II r 53.8 14 0.0003 24.5 2.3 31 177-207 4-34 (46)
76 COG1114 BrnQ Branched-chain am 52.7 16 0.00035 36.1 3.8 62 2-76 267-328 (431)
77 CHL00020 psbN photosystem II p 50.5 14 0.0003 24.1 1.9 29 179-207 3-31 (43)
78 PRK15433 branched-chain amino 46.8 16 0.00034 36.7 2.7 64 2-79 269-332 (439)
79 PF02468 PsbN: Photosystem II 44.4 23 0.00049 23.2 2.2 29 180-208 4-32 (43)
80 TIGR02121 Na_Pro_sym sodium/pr 38.1 4.5E+02 0.0096 26.7 20.5 78 2-93 108-188 (487)
81 PRK10484 putative transporter; 36.5 4.9E+02 0.011 26.7 21.7 85 2-94 105-194 (523)
82 KOG2082 K+/Cl- cotransporter K 35.1 5.2E+02 0.011 28.2 11.4 93 5-97 186-285 (1075)
83 TIGR03648 Na_symport_lg probab 34.7 5.4E+02 0.012 26.6 26.2 76 2-91 99-175 (552)
84 PRK00701 manganese transport p 29.3 6E+02 0.013 25.5 22.0 41 2-42 98-138 (439)
85 COG0814 SdaC Amino acid permea 29.2 3.1E+02 0.0068 27.3 8.8 52 283-334 323-375 (415)
86 COG4956 Integral membrane prot 28.7 4.2E+02 0.0091 25.4 8.7 34 284-317 80-122 (356)
87 TIGR02230 ATPase_gene1 F0F1-AT 27.2 2.8E+02 0.0061 21.8 6.3 18 345-362 77-94 (100)
88 PRK09400 secE preprotein trans 27.1 35 0.00077 24.2 1.2 32 164-201 21-52 (61)
89 TIGR00327 secE_euk_arch protei 26.1 38 0.00083 24.0 1.2 31 166-202 19-49 (61)
90 PRK11026 ftsX cell division AB 24.2 3.6E+02 0.0077 25.7 7.8 27 345-371 280-306 (309)
91 TIGR00439 ftsX putative protei 23.3 4E+02 0.0087 25.4 8.0 28 345-372 280-307 (309)
92 KOG1288 Amino acid transporter 22.8 1.6E+02 0.0034 31.5 5.2 52 145-199 298-349 (945)
93 PF05805 L6_membrane: L6 membr 20.5 3.4E+02 0.0074 24.1 6.3 60 311-370 49-118 (195)
94 PRK12768 CysZ-like protein; Re 20.1 3.8E+02 0.0082 24.6 6.8 28 164-196 9-36 (240)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-51 Score=401.05 Aligned_cols=329 Identities=37% Similarity=0.644 Sum_probs=287.6
Q ss_pred ChhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873 1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 80 (381)
Q Consensus 1 ~dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~ 80 (381)
.|+|+++||+++|+++.+.+.+.++|+|++|+++.||+++.+.+..|.+. ..++.+.|+++++++++|++|+||
T Consensus 108 ~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~------~~l~~~~f~iif~~i~~~~s~lp~ 181 (437)
T KOG1303|consen 108 PDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLND------NSLDKQYFIIIFGLIVLPLSQLPN 181 (437)
T ss_pred HHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------ccccceehhhhHHHHHHHHHHCCC
Confidence 49999999999999999999999999999999999999999998765321 034457899999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873 81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 160 (381)
Q Consensus 81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~ 160 (381)
+++++|+|..|+++++.|.++.++.++.++.+...+++..++. + ... ..++++|++.|+|+||+++
T Consensus 182 ~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~--~----------~~~--~~f~a~g~iaFaf~gH~v~ 247 (437)
T KOG1303|consen 182 FHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL--G----------TIP--TVFTALGIIAFAYGGHAVL 247 (437)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccC--C----------CCc--chhhhhhheeeeecCCeee
Confidence 9999999999999999999999988888776542222222211 0 111 1189999999999999999
Q ss_pred HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCchhHHHHHHHHHHHHHHHhhh
Q 016873 161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240 (381)
Q Consensus 161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~i~~~~s~~ 240 (381)
||||++||+| ++|+|++.+++.+++.+|+++++.||++|||+++||++.|++ +|.|+.+.+++++.+|++.+|+
T Consensus 248 peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~ 321 (437)
T KOG1303|consen 248 PEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQ 321 (437)
T ss_pred eehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhh
Confidence 9999999999 359999999999999999999999999999999999999963 5789999999999999999999
Q ss_pred eeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhH
Q 016873 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPL 320 (381)
Q Consensus 241 l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~~~~l 320 (381)
++.+|.++.+|++...+.++ + .+ +..+.|++.|+.+++.++++|+.+|+|+++++|+||+...++
T Consensus 322 i~a~pl~~~~E~~~~~~~~~--~------------~~-~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~ 386 (437)
T KOG1303|consen 322 IYAQPLFDVVEKLIGVKHPD--F------------KK-RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPL 386 (437)
T ss_pred hhhcchHHHHHHHhccCCcc--c------------cc-cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHH
Confidence 99999999999998765332 1 00 123789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 016873 321 TVYFPIEMYKAQKKIGRGTTRWLGLQIL-NVSCFFITLVAAIGSVAGVVLD 370 (381)
Q Consensus 321 ~fi~P~l~~lkl~~~~~~~~~~~~~~~l-~~~g~~~~v~gt~~si~~li~~ 370 (381)
++++|+++|++++|+++.+.+|+.++.+ .++|+++++..+.+++++++.+
T Consensus 387 t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 387 TFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999998888 7999999999999999998754
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-48 Score=377.56 Aligned_cols=313 Identities=15% Similarity=0.196 Sum_probs=267.1
Q ss_pred hhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCchh
Q 016873 5 KANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQV 84 (381)
Q Consensus 5 ~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~l 84 (381)
.+.+||++|.++++.+.++|+|.|++|+|+++|+++++.+. +.+. .++.+.|+++..+++++++++||+|.|
T Consensus 131 ~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~---~~~~-----~~s~~~~i~~~~~~~lll~~Ir~Lk~L 202 (449)
T KOG1304|consen 131 LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE---HSPG-----VLSVRLYILIQLPPLLLLNLIRNLKIL 202 (449)
T ss_pred HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc---cCCC-----CccHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 56799999999999999999999999999999999999872 1111 467788998888899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhHHHH
Q 016873 85 WWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQ 164 (381)
Q Consensus 85 ~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~~i~ 164 (381)
+.+|++|+++.++-.+++ .++..++.+ +.++ .+...+..+...++|+.+|||+|++++.|+|
T Consensus 203 sp~Sl~Anv~~~~g~~ii----~~y~~~~~~---~~~~-----------~~~~~~~~~~~lf~GtaifafEGig~VLPlE 264 (449)
T KOG1304|consen 203 SPFSLFANVFILVGLAII----MYYLVQDLP---PTSD-----------LPAVTGWSGLPLFFGTAIFAFEGIGMVLPLE 264 (449)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHhccC---Cccc-----------cccccchhhhHHHHHHHHHHhccceEEEehh
Confidence 999999998766533332 233333321 1111 2234445678889999999999999999999
Q ss_pred hhhcCCccccccch---hhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCchhHHHHHHHHHHHHHHHhhhe
Q 016873 165 DTIRSPPAEYKTMK---KATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQV 241 (381)
Q Consensus 165 ~~M~~P~~~~~~~~---~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~i~~~~s~~l 241 (381)
|+||+| ++|+ ++++.++.+++++|+.+|++||++|||++++.|++|.| + +|+.+.+++++++.+..+||+
T Consensus 265 n~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~pL 337 (449)
T KOG1304|consen 265 NSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYPL 337 (449)
T ss_pred hcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCch
Confidence 999999 5788 99999999999999999999999999999999999964 4 899999999999999999999
Q ss_pred eccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhHH
Q 016873 242 FCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLT 321 (381)
Q Consensus 242 ~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~~~~l~ 321 (381)
+.+|..+++|+.+.++..++ +.++....+|+.+++++..+|.++|+++++++|+||++++.+.
T Consensus 338 Q~yv~~eIi~~~i~~k~~~~-----------------~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~ 400 (449)
T KOG1304|consen 338 QFYVPIEIIEPGIRKKFSEN-----------------RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLA 400 (449)
T ss_pred hhhhhHHHHHHhHHHhcCcc-----------------hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHH
Confidence 99999999999886653221 1136788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016873 322 VYFPIEMYKAQKKIGR---GTTRWLGLQILNVSCFFITLVAAIGSVAGV 367 (381)
Q Consensus 322 fi~P~l~~lkl~~~~~---~~~~~~~~~~l~~~g~~~~v~gt~~si~~l 367 (381)
+++|++++++.++++. +.++++.|.+++++|++..+.|||.|++++
T Consensus 401 li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 401 LIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999975443 456777899999999999999999999864
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=7.1e-48 Score=386.93 Aligned_cols=339 Identities=14% Similarity=0.142 Sum_probs=256.8
Q ss_pred ChhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873 1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 80 (381)
Q Consensus 1 ~dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~ 80 (381)
.|+++++|||++++++++.++++++|+|++|+++.||+++.+++....+ +..+.. ..++..+.+++.++++|++++|+
T Consensus 124 ~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~-~~~~~~-~~~r~~~~~i~~~i~lPLs~~r~ 201 (467)
T PTZ00206 124 EGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAP-DFLKQK-SGNRLLTSLMWLCFMLPLVIPRH 201 (467)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-chhhhc-cCcEEeeeehhhhHhhhcccccc
Confidence 4899999999999999999999999999999999999999887531100 000000 01122344557788999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873 81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 160 (381)
Q Consensus 81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~ 160 (381)
+++|+|+|.+|+++.+...+++++....++..+ ..++.+.++. ...+........+.+.++|+++|||.||.++
T Consensus 202 i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~-----~~~~~~~~~~-~~~~~~~f~~~~~~~~algi~~faF~~h~~~ 275 (467)
T PTZ00206 202 IDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPE-----NIKNVSVGKD-DNAEIILFNSGNRAIEGLGVFIFAYVFQITA 275 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcc-----cccccccCCC-CCCceEEecCchHHHhhhhHHHhhhhhhhhh
Confidence 999999999998665543333333333322211 1111111110 0000011112235789999999999999999
Q ss_pred HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCchhHHHHHHHHHHHHHHHhhh
Q 016873 161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240 (381)
Q Consensus 161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~i~~~~s~~ 240 (381)
||+++||||| +.++|.+++..++.++.++|..+|++||++||+++++||+.|+++ .++....++++++.+.++.+||
T Consensus 276 ~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~syp 352 (467)
T PTZ00206 276 YEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYA 352 (467)
T ss_pred HHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhh
Confidence 9999999998 678999999999999999999999999999999999999999742 2345567778888899999999
Q ss_pred eeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhH
Q 016873 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPL 320 (381)
Q Consensus 241 l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~~~~l 320 (381)
+..+|+++.+++.+.++ +++ .+ .++|...+..++++++++|+++|+++.+++|+||++++.+
T Consensus 353 L~~~p~r~~i~~~~~~~--~~~---------~~-------~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l 414 (467)
T PTZ00206 353 LLGMACRNALYDVIGWD--ARK---------VA-------FWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLL 414 (467)
T ss_pred hhhhhHHHHHHHHhCCC--ccc---------Cc-------hhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHH
Confidence 99999999999886432 111 01 2556666777777889999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016873 321 TVYFPIEMYKAQK---KIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVV 368 (381)
Q Consensus 321 ~fi~P~l~~lkl~---~~~~~~~~~~~~~~l~~~g~~~~v~gt~~si~~li 368 (381)
+|++|++||+|.. +++....+|+.+++++++|++..++|||+|+.+.+
T Consensus 415 ~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 415 GFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 9999999999953 22223345667899999999999999999999876
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=5.2e-44 Score=357.95 Aligned_cols=324 Identities=17% Similarity=0.165 Sum_probs=259.5
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 81 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l 81 (381)
|+++..+||+++.+..+...++++|.|+.|++..++++..+- + .++.+.|+++++++++|++++|++
T Consensus 124 e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~-----------~--~~~~~~~~~i~~~v~~~~~~i~sl 190 (473)
T PLN03074 124 EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN-----------D--NLDKRTWTYIFGACCATTVFIPSF 190 (473)
T ss_pred HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC-----------C--CcCCCeEEeehHHHHHHHHHccCH
Confidence 567778999999999999999999999999998888766541 1 345678899999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 016873 82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL 161 (381)
Q Consensus 82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~ 161 (381)
++++++|.+|..+++.+...+++....++.+ ++.+. ..+.+....+.+.++++|||+||+++|
T Consensus 191 ~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~--------~~~~~---------~~~~~~~~~f~~~~~i~faf~g~~v~~ 253 (473)
T PLN03074 191 HNYRIWSFLGLLMTTYTAWYMTIAALSHGQV--------EGVKH---------SGPTKLVLYFTGATNILYTFGGHAVTV 253 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CCCCC---------CCchhHHHHHHHHHHHHHHhcccccHH
Confidence 9999999999876655433333333322211 11110 113345567888999999999999999
Q ss_pred HHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCc--ccccccCCCCchhHHHHHHHHHHHHHHHhh
Q 016873 162 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPN--NLLTGFGFYNPYWLIDIANAAIVVHLVGAY 239 (381)
Q Consensus 162 ~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~--~Il~n~~~~~~~~~~~~~~~~~~i~~~~s~ 239 (381)
|||+||||| ++|+++...+...+..+|..+|+.||++|||++++ +.+.|.| ++. ...+++++++++++.+|
T Consensus 254 ~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~~-~~~~~~~~~~i~~~~sy 326 (473)
T PLN03074 254 EIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RSG-WRDAAVILMLIHQFITF 326 (473)
T ss_pred HHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cch-HHHHHHHHHHHHHHHHH
Confidence 999999999 57999999999999999999999999999999864 5566643 233 35788999999999999
Q ss_pred heeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhh
Q 016873 240 QVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWP 319 (381)
Q Consensus 240 ~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~~~~ 319 (381)
++++.|+.+.+|+....+ +. +....|.++|+.+++.++++|+.+|+|+++++|+||++++.
T Consensus 327 ~l~~~p~~~~~e~~~~~~--~~-----------------k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~ 387 (473)
T PLN03074 327 GFACTPLYFVWEKAIGVH--DT-----------------KSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSF 387 (473)
T ss_pred HHHHhhHHHHHHHHhccc--cc-----------------ccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 999999999999876432 10 11367899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCC-------------Ccchh--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccccccCCcCC
Q 016873 320 LTVYFPIEMYKAQKKIG-------------RGTTR--WLGLQILNVSC-FFITLVAAIGSVAGVVLDLKTYKPFKTRY 381 (381)
Q Consensus 320 l~fi~P~l~~lkl~~~~-------------~~~~~--~~~~~~l~~~g-~~~~v~gt~~si~~li~~~~~~~~f~~~~ 381 (381)
++|++|+++|+++++++ .+.++ .+.|+.+++++ ++..+.|||+|++++++++++|+.|++-|
T Consensus 388 l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~~ 465 (473)
T PLN03074 388 TVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKCY 465 (473)
T ss_pred HHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhhhc
Confidence 99999999999875332 11222 36788888764 44468999999999999999999998864
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=6.5e-43 Score=346.28 Aligned_cols=333 Identities=24% Similarity=0.328 Sum_probs=261.4
Q ss_pred ChhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873 1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 80 (381)
Q Consensus 1 ~dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~ 80 (381)
.|++++++||++++++++++.++++|.|++|+++.+|.++++.+.... ....++..+.++.+++++|++++|+
T Consensus 71 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~-------~~~~~~~~~~~i~~~i~~pls~~~~ 143 (409)
T PF01490_consen 71 GDLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFG-------DLFISRYVWIIIFALIVLPLSFLKN 143 (409)
T ss_pred cccccccccccccccccchheeccccccceeEEEeeeeeecccccccc-------cccccccccccccccccccccccch
Confidence 489999999999999999999999999999999999999998764210 1234567788888899999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873 81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 160 (381)
Q Consensus 81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~ 160 (381)
++++++.|.+|.++.+.+.++.+... ......+ .++.... +.....+.++++.++|+++|||.||.++
T Consensus 144 l~~l~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~i~~faf~~~~~~ 211 (409)
T PF01490_consen 144 LKSLRYLSILGLFSIFYFIVIVVIYI-ISYGPGE-----PSGVPSP------PVWPFISFSGFFSAFGIIIFAFSCHPNL 211 (409)
T ss_pred hhHHHHHhhhhhhccceeeeeeccee-eeeeccc-----ccccccc------cccccchhhHHHHhhhhhhhhhhccccc
Confidence 99999999999876543212222111 1111111 1111100 0113455678999999999999999999
Q ss_pred HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCchhHHHHHHHHHHHHHHHhhh
Q 016873 161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240 (381)
Q Consensus 161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~i~~~~s~~ 240 (381)
||+++|||+|+ +.++++|+...++.+++++|+.+|..||++||+++++|++.|++ ++++...++++++.++++.+||
T Consensus 212 ~~i~~~m~~~~-~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~p 288 (409)
T PF01490_consen 212 PPIQSEMKDPS-KFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYP 288 (409)
T ss_pred ceeeeeccCCc-cccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--Ccccccccccccchhhhhhccc
Confidence 99999999993 22567799999999999999999999999999999999999975 3446778889999999999999
Q ss_pred eeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhH
Q 016873 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPL 320 (381)
Q Consensus 241 l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~~~~l 320 (381)
+..+|.++.+|+.+.++.+.++..+.+ +.+.+++|..+|+.++..+.++|+.+|+++++++++||++++.+
T Consensus 289 l~~~p~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i 359 (409)
T PF01490_consen 289 LQLFPARNSLENLLFKRAASSRDSPKN---------TPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFI 359 (409)
T ss_pred cccchhHhhhhhheecccccccccccc---------ccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhH
Confidence 999999999999886420000000000 01124678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcchhH-----HHHHHHHHHHHHHHHHHHHHHH
Q 016873 321 TVYFPIEMYKAQKKIGRGTTRW-----LGLQILNVSCFFITLVAAIGSV 364 (381)
Q Consensus 321 ~fi~P~l~~lkl~~~~~~~~~~-----~~~~~l~~~g~~~~v~gt~~si 364 (381)
+|++|+++|+|.+|.++.+.++ ..++..+++|++.++.||+.++
T Consensus 360 ~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 360 SFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred HHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 9999999999997665433322 3356778899999999999876
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-34 Score=280.62 Aligned_cols=333 Identities=17% Similarity=0.232 Sum_probs=253.8
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCch-hhHHHHHHHHHhhcCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNG-YMITFGIIEVLFSQIPD 80 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~ii~~~v~~pl~~l~~ 80 (381)
++++..+|+.++...++.......| |++|++.+||.+..+....-..++..+. ..+++. |++...++..|++..|+
T Consensus 71 ~l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~--~~~~~~~ill~~~~~i~pLsl~k~ 147 (411)
T KOG1305|consen 71 SLGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSH--YLDRNFLILLVLLFIILPLSLLKN 147 (411)
T ss_pred HHHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccc--cccceeEeehHHHHHHHHHHHHHh
Confidence 5789999999977777777777777 7999999999999766542111110000 122333 56667788999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873 81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 160 (381)
Q Consensus 81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~ 160 (381)
++++++.|.++.+..+.++.++++..... +. ..++.++. .++...+++.+.++|+++|||.||.+.
T Consensus 148 l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~----~~---~~~~~~~~-------~~~~~~~~~~~~~~pi~~faf~Ch~n~ 213 (411)
T KOG1305|consen 148 LDSLKYTSALSLASVVYFVVLVVYKYFQG----PC---ALGRLSYL-------VPNLSSFSSLFYALPIFVFAFTCHSNV 213 (411)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhc----cc---ccCCcccc-------cCCcchhhhhhhhhhhhheeeeccccc
Confidence 99999999999877665544443332221 10 01111110 122333368899999999999999999
Q ss_pred HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCch----hHHHHHHHHHHHHHH
Q 016873 161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPY----WLIDIANAAIVVHLV 236 (381)
Q Consensus 161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~----~~~~~~~~~~~i~~~ 236 (381)
.++++||||| +.++|.++...+...+..+|..+|.+||+.|||++++|++.+++-..+. +....++..+.++.+
T Consensus 214 ~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~ 291 (411)
T KOG1305|consen 214 FPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVL 291 (411)
T ss_pred eeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHH
Confidence 9999999999 6899999999999999999999999999999999999999997632221 234678999999999
Q ss_pred HhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhh
Q 016873 237 GAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMG 316 (381)
Q Consensus 237 ~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~ 316 (381)
..+|+..+|++..+++...+++|+++ . + .+.++.+....++..+...|+.+|+++++.+++||++
T Consensus 292 l~~pi~~fPlr~~l~~~~~~~~~~~~----~-----~------s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~ 356 (411)
T KOG1305|consen 292 LTFPIVLFPLRMNLDELLFPYQPGLT----S-----F------SGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATS 356 (411)
T ss_pred HHHHHHhchHHHHHHHHhcccCCCCC----C-----c------cceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhh
Confidence 99999999999999988776544321 1 1 0245677777888888999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016873 317 FWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLD 370 (381)
Q Consensus 317 ~~~l~fi~P~l~~lkl~~~~~~~~~~~~~~~l~~~g~~~~v~gt~~si~~li~~ 370 (381)
++.++||+|+++|+|.+|. +++.....+...++|+...+.|+..-+.++..+
T Consensus 357 ~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 357 STSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred hhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999766 333344566777888888888888888777654
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-35 Score=271.11 Aligned_cols=329 Identities=16% Similarity=0.185 Sum_probs=262.4
Q ss_pred hhhhhhcCCC-cceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873 2 DAVKANLGGK-KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 80 (381)
Q Consensus 2 dl~~~~~G~~-~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~ 80 (381)
++|+.+++|. |.+.+.+.+++.+..+|+.|+|..||.+..-++. . ..+++-|+++.+..++|.+++++
T Consensus 189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~------~-----svd~~sWm~i~~a~LLpc~FLk~ 257 (524)
T KOG4303|consen 189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPG------L-----SVDKASWMMITSASLLPCSFLKD 257 (524)
T ss_pred HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCC------C-----CccccchhhhhhHHHhhhHHHHH
Confidence 5788889987 6688899999999999999999999988865432 1 34577899999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873 81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 160 (381)
Q Consensus 81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~ 160 (381)
+|-++-+|+.++..-++.-.+++..+... ++ |.....+.+ ..+..++...+|+++|+|+.|...
T Consensus 258 Lk~VS~lSf~ct~sH~viN~i~v~YCLs~-~~----dW~wskv~F-----------sidi~~fPisvG~iVFsYTSqIFL 321 (524)
T KOG4303|consen 258 LKIVSRLSFFCTISHLVINLIMVLYCLSF-VS----DWSWSKVTF-----------SIDINTFPISVGMIVFSYTSQIFL 321 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh----hccceeEEE-----------EEEcccCceEEEEEEEeeeceeec
Confidence 99999999999888887776666655432 22 233333332 233345667899999999999999
Q ss_pred HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCchhHHHHHHHHHHHHHHHhhh
Q 016873 161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 240 (381)
Q Consensus 161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~~~~~~~~~~~~i~~~~s~~ 240 (381)
|+++.+|++| .+|.-.+.++-+...++-..+|..||++||+.++..|.+|.| +.-...++|+...+..+.|||
T Consensus 322 P~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~VN~fLV~KALLSYP 394 (524)
T KOG4303|consen 322 PNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKILVNLFLVVKALLSYP 394 (524)
T ss_pred cccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhhhhHHHHHHHHHcCC
Confidence 9999999999 356666778888888888999999999999999999999953 334567889999999999999
Q ss_pred eeccchHHHHHHHHhccCCCCccCcccccccCCC-c-cccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhh
Q 016873 241 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPF-W-GVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFW 318 (381)
Q Consensus 241 l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~-~-~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~~~ 318 (381)
+-.+...+.+|+-+..--|+..| |. | +..+.+...+-+|..+++.++++|+.+|+|..++||+|+++++
T Consensus 395 LPfyAAvelLe~nlF~g~p~t~F---------pscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGt 465 (524)
T KOG4303|consen 395 LPFYAAVELLENNLFLGYPQTPF---------PSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGT 465 (524)
T ss_pred chHHHHHHHHHHhhhcCCCCCCC---------ceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccc
Confidence 87766677777755433243322 21 1 1112234456789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016873 319 PLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKT 373 (381)
Q Consensus 319 ~l~fi~P~l~~lkl~~~~~~~~~~~~~~~l~~~g~~~~v~gt~~si~~li~~~~~ 373 (381)
.++||.|++||+++++......+..++..+++.|...++.|.|-|-.++++.++.
T Consensus 466 mLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 466 MLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS 520 (524)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence 9999999999999975544444555788899999999999999999999999875
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.88 E-value=4.9e-21 Score=189.56 Aligned_cols=323 Identities=15% Similarity=0.164 Sum_probs=217.3
Q ss_pred ChhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873 1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 80 (381)
Q Consensus 1 ~dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~ 80 (381)
.|++++.+||+++++.++...+.++|.+.+|.+..||.+++..+.. ++. + ..+++...+++..++.++++.++
T Consensus 75 ~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~-~~~----~--~~~r~~~~lif~~~~~~l~~~~~ 147 (415)
T COG0814 75 TSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQ-FGL----N--PLPRKLGSLIFALVLAFLSWLGT 147 (415)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhh-ccc----C--CcchHHHHHHHHHHHHHHHHhch
Confidence 3789999999999999999999999999999999999999998742 111 1 14566677778888888999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873 81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 160 (381)
Q Consensus 81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~ 160 (381)
...++..|.+.....+..++... +. .... +. .+..--| ...+....+...++|++.|||+||+++
T Consensus 148 ~~~lk~ts~l~~~~v~~~~~l~~----~~-~~~~--~~--~~l~~~~------~~~~~~~~~~~~~ipv~vfsF~~h~~i 212 (415)
T COG0814 148 LAVLKITSLLVFGKVIYLVLLVV----YL-IPHW--NP--ANLFALP------SASQSFWKYLLLAIPVFVFSFGFHGNI 212 (415)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HH-hccc--CH--HHHhccc------ccchhhHHHHHHHhhHHHhhhhCCccc
Confidence 99999999887665443222211 11 1110 00 0000000 000244456788999999999999999
Q ss_pred HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccccCCCCchhHH-------------HHH
Q 016873 161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLI-------------DIA 227 (381)
Q Consensus 161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n~~~~~~~~~~-------------~~~ 227 (381)
|++++|||+++ +++.+|+...+..+..++|..+++++|..+|+.+.++++.+.+ +++.+. ...
T Consensus 213 ~si~~~~~~~~--~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~--~~~~~l~~~~~~~~~~~~~~~~ 288 (415)
T COG0814 213 PSLVNYMRKNS--KKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE--QNISLLSALAGVINSPILSIAL 288 (415)
T ss_pred hHHHHHhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC--chHHHHHHHHHhhcchHHHHHH
Confidence 99999999983 4459999999999999999999999999999999999999864 222211 112
Q ss_pred HHHHHHHHHHhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchh-HHHHHHHHHHHHHHHHHHccchH
Q 016873 228 NAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLF-RLVWRTLFVVLTTLISMLLPFFN 306 (381)
Q Consensus 228 ~~~~~i~~~~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-r~~~r~~~v~~~~~iA~~iP~f~ 306 (381)
++.-.+.+..||-=.....+|..|+.+++. +++. ++ .....+ ............+..+...|..+
T Consensus 289 ~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~--~~~~-~r-----------~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 354 (415)
T COG0814 289 NIFALFAIATSFLGVYLGLFEGLADLFKKS--NSKP-GR-----------KKTGLLTFLPPLIFALLYPWGFAIALGYAG 354 (415)
T ss_pred HHHHHHHHHHHHhCchhhHHHhhhHHHHhc--cCcc-cc-----------hhhhhhhHHHHHHHHHHHHHHHHHHhHhHH
Confidence 222233333333222223344455544321 1000 00 011112 22333334556677899999999
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 016873 307 DVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGS 363 (381)
Q Consensus 307 ~vl~LvGa~~~~~l~fi~P~l~~lkl~~~~~~~~~~~~~~~l~~~g~~~~v~gt~~s 363 (381)
.+++-+|+..+..+.++.|...+.|....+.+..++..+..++++|+..++.-.++.
T Consensus 355 ~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~ 411 (415)
T COG0814 355 GLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLAT 411 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987774333322212356667778877666554443
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.63 E-value=1.2e-14 Score=143.08 Aligned_cols=285 Identities=14% Similarity=0.061 Sum_probs=187.8
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 81 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l 81 (381)
|.++++|||++++++.+...+.++..+.+|.+..++.++.+++.. .. . ..+++...+++.+++.++.+ +..
T Consensus 63 ~~~~~~~G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~-~~-----~--~~~~~~~~~~~~~v~~~l~~-~G~ 133 (381)
T TIGR00837 63 TIAKDLLGKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEY-FG-----F--PWSARAIVLIFTVLFGSFVW-LST 133 (381)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHh-cC-----C--CccHHHHHHHHHHHHHHHHH-hch
Confidence 678999999999999999999999999999999999999887631 11 0 12223333344444455444 445
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 016873 82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL 161 (381)
Q Consensus 82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~ 161 (381)
+..+.++.+.....+....+.++....+. +.++. .|. ...+....+...+++..+++|++|.+++
T Consensus 134 ~~~~~v~~i~~~~~l~~l~~~ii~~~~~~--------~~~~~--~~~-----~~~~~~~~~~~~a~~~~~~~fg~~~~i~ 198 (381)
T TIGR00837 134 SAVDRITRVLIFGKIIAFALVFSGLLPHV--------KGDLL--LDV-----ALDTSYWPYILSALPVCLTSFGFHGNVP 198 (381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cHHHH--hcC-----ccccccHHHHHHHHHHHHHHHHcccccH
Confidence 77777776554443332222222222211 00110 000 0001233467789999999999999999
Q ss_pred HHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCc-------cc---ccccC-CCCchhHHHHHHHH
Q 016873 162 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPN-------NL---LTGFG-FYNPYWLIDIANAA 230 (381)
Q Consensus 162 ~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~-------~I---l~n~~-~~~~~~~~~~~~~~ 230 (381)
++.+++++| +|+.+|+...+..+++++|+.+........+.+.-. ++ ..... .....+...+..++
T Consensus 199 ~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~ 275 (381)
T TIGR00837 199 SLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELF 275 (381)
T ss_pred HHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHH
Confidence 999999876 378999999999999999998866555554432211 10 00000 01223444566777
Q ss_pred HHHHHHHhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchH-HHH
Q 016873 231 IVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFN-DVV 309 (381)
Q Consensus 231 ~~i~~~~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~-~vl 309 (381)
-.+.+.+|+.-.....+|.+++.++++.++ ..|.....+..+...++|...|+.. ..+
T Consensus 276 ~~~al~tS~~g~~l~~~d~l~~~~~~~~~~---------------------~~~~~~~~~~~~~pl~~a~~~p~~~~~~l 334 (381)
T TIGR00837 276 SNFALASSFLGVTLGLFDYLADLFKFDDSK---------------------KGRFKTGLLTFLPPLVFALFYPEGFLYAI 334 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccc---------------------CCCchhhhhhHHhHHHHHHHhhHHHHHHH
Confidence 777888888877777888877776542110 1133444555677788899999866 899
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhccC
Q 016873 310 GILGAMGFWPLTVYFPIEMYKAQKKI 335 (381)
Q Consensus 310 ~LvGa~~~~~l~fi~P~l~~lkl~~~ 335 (381)
+..| +..+.+.+++|++++.|.||+
T Consensus 335 ~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 335 GYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 9999 888999999999999998754
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.44 E-value=1.7e-11 Score=120.93 Aligned_cols=285 Identities=16% Similarity=0.160 Sum_probs=176.9
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 81 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l 81 (381)
|++++.+||+++++..+...+..++.+++|..-.|+.+++.++.... .+.+++.-.+++.++...+.+..+
T Consensus 69 ~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--------~~~~~~~~~~~f~~i~~~iv~~g~- 139 (394)
T PF03222_consen 69 SMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--------TDLSPWLSSLLFTIIFGGIVYFGT- 139 (394)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHHHHHHhhH-
Confidence 78999999999999999999999999999999999999999875210 123333333333333333222221
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 016873 82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL 161 (381)
Q Consensus 82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~ 161 (381)
+-+...+-.-+...+......++..+.+ ...++.... .....++...+.++|++++||+.|+++|
T Consensus 140 ~~v~~~n~~lv~~~i~~~~~l~~~~~p~--------~~~~~L~~~-------~~~~~~~~~~~~~lPv~~~Sf~f~~ivP 204 (394)
T PF03222_consen 140 KAVDRINRVLVFGMIISFIILVVYLIPH--------WNPSNLLDA-------PPSPSDWSYILPALPVLVFSFGFHNIVP 204 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh--------cCHHHhhcc-------ccccccHHHHHHHHHHHHHHHHHHhhhH
Confidence 1222222111111111011111111111 111111100 1123444567789999999999999999
Q ss_pred HHHhhhcCCccccccchhhhhhhHHHHHHHHhhh--hhhhc---------cccCCCCCc--ccccccCCCCchhHHHHHH
Q 016873 162 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC--GCMGY---------AAFGDLAPN--NLLTGFGFYNPYWLIDIAN 228 (381)
Q Consensus 162 ~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~--g~~GY---------~~fG~~v~~--~Il~n~~~~~~~~~~~~~~ 228 (381)
++.+.+++. .|+.+|+...+..+..++|+.. ...|- ..-|+++.+ ..+.+ ...+.+...+.+
T Consensus 205 sl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~i~~~~~ 279 (394)
T PF03222_consen 205 SLVKYLGGD---PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALAN--VSGSPWISILGS 279 (394)
T ss_pred HHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHh--hcCCcHHHHHHH
Confidence 999999864 4789999999988888888765 33331 122222221 12222 112334555667
Q ss_pred HHHHHHHHHhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccc-hHH
Q 016873 229 AAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FND 307 (381)
Q Consensus 229 ~~~~i~~~~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~-f~~ 307 (381)
+.-.+.+.+||-=...-.+|.+++.++. +++ +..|...-.+..+-.+++|...|+ |-.
T Consensus 280 ~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r~~~~~ltf~ppl~~a~~~p~~F~~ 338 (394)
T PF03222_consen 280 IFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGRLKTWLLTFLPPLIFALLFPNGFLI 338 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccchHHHHHHHHHhHHHHHHHCcHHHHH
Confidence 7777888888865556678888877653 121 012434444455667888999995 889
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhccCCC
Q 016873 308 VVGILGAMGFWPLTVYFPIEMYKAQKKIGR 337 (381)
Q Consensus 308 vl~LvGa~~~~~l~fi~P~l~~lkl~~~~~ 337 (381)
.+++.| ...+.+..++|+++..|.||+++
T Consensus 339 al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 339 ALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred HHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 999999 99999999999999999875544
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.31 E-value=2.6e-10 Score=112.04 Aligned_cols=281 Identities=13% Similarity=0.120 Sum_probs=175.7
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 81 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l 81 (381)
.++|+.+||+|+.+..+......++.+++|+--.||.+++.++.. .. +.+++.-.++++++.-...+..+
T Consensus 77 tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~-------~i~~~~~~llF~~~~~~iv~~gt- 146 (414)
T PRK10483 77 TITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SL-------NVPARAAGFGFALLVAFVVWLST- 146 (414)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CC-------CCcHHHHHHHHHHHHHHHHHhhh-
Confidence 478999999999999999999999999999999999999887641 10 22323333445544444444332
Q ss_pred chhhHHH---HHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccch
Q 016873 82 DQVWWLS---IVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSI 158 (381)
Q Consensus 82 ~~l~~~S---~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~ 158 (381)
+.....+ +.+.+.++. +.+ ......++. ..+.+.+. .....+.....++|++++||+.|+
T Consensus 147 ~~vd~~n~~l~~~~i~~f~---~~~-~~l~~~i~~----~~L~~~~~---------~~~~~~~~~~~alPvl~~SFgfh~ 209 (414)
T PRK10483 147 KAVSRMTAIVLGAKVITFF---LTF-GSLLGHVQP----ATLFNVAE---------SNASYAPYLLMTLPFCLASFGYHG 209 (414)
T ss_pred hHHHHHHHHHHHHHHHHHH---HHH-HHHHhhcCH----HHHhcccc---------ccchhHHHHHHHHHHHHhhccCCC
Confidence 3444433 222222111 111 111111110 00111110 011222346789999999999999
Q ss_pred hhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhh--hhhhccc---------cCCCCCcccccccC-CCCchhHHHH
Q 016873 159 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC--GCMGYAA---------FGDLAPNNLLTGFG-FYNPYWLIDI 226 (381)
Q Consensus 159 ~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~--g~~GY~~---------fG~~v~~~Il~n~~-~~~~~~~~~~ 226 (381)
++|++.+.+++. .|+.+|++..+..+..++|+.. ...|-.. -|++++. .+.... ..++.+...+
T Consensus 210 iIPsl~~y~~~d---~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~-L~~~l~~~~~~~~i~~~ 285 (414)
T PRK10483 210 NVPSLMKYYGKD---PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDV-LVQALSGVLNSRSLDLL 285 (414)
T ss_pred cchHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHH-HHHHHHHhcCChHHHHH
Confidence 999999999864 3689999999999999999773 2233221 3333321 111110 0122344445
Q ss_pred HHHHHHHHHHHhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccc-h
Q 016873 227 ANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-F 305 (381)
Q Consensus 227 ~~~~~~i~~~~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~-f 305 (381)
..+.-.+.+.+||-=...-.+|.+++.++.+ ++. ..|...-.+..+-.+++|+..|+ |
T Consensus 286 ~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~--~~~-------------------~~r~~~~~ltflPPl~~al~~P~~F 344 (414)
T PRK10483 286 LVVFSNFAVASSFLGVTLGLFDYLADLFGFD--DSA-------------------MGRFKTALLTFLPPVVGGLLFPNGF 344 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeehhhHhhHHHHHHHhHHHH
Confidence 6677777888888656666788888877542 110 12333334556777889999997 8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHhccC
Q 016873 306 NDVVGILGAMGFWPLTVYFPIEMYKAQKKI 335 (381)
Q Consensus 306 ~~vl~LvGa~~~~~l~fi~P~l~~lkl~~~ 335 (381)
-..++..|.+ .+.+.-++|+++-.|.||+
T Consensus 345 l~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 345 LYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 8899999987 6777789999999999864
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.31 E-value=3.2e-10 Score=111.68 Aligned_cols=303 Identities=11% Similarity=0.081 Sum_probs=184.7
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 81 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l 81 (381)
+++++.+||+|+++..+......+..+.+|..-.|+.+.+.+.. +... +++.....+++.++.....+..+
T Consensus 69 ~~a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~--~~~~------~i~~~~~~l~F~~~~~~iv~~g~- 139 (403)
T PRK15132 69 TLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISD--WTGI------SMSPTAGVLLFTLVAGGVVCVGT- 139 (403)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH--hccC------CCChHHHHHHHHHHHHHHHhccH-
Confidence 67999999999999999999999999999999999999888764 1100 12223344444444333334332
Q ss_pred chhhHHHH-HHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873 82 DQVWWLSI-VAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 160 (381)
Q Consensus 82 ~~l~~~S~-i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~ 160 (381)
+.....+- +-....+.+. .... ...++ .+.++.... +...+ ....++|++.+||+.|+++
T Consensus 140 ~~v~~~n~~L~~~~ii~~~--~~~~---~l~p~----~~~~~L~~~--------~~~~~--~~~~~iPvl~~SFgfh~iI 200 (403)
T PRK15132 140 SSVDLFNRFLFSAKIIFLV--VMLA---LMMPH----IHKVNLLTL--------PLQQG--LALSAIPVIFTSFGFHGSV 200 (403)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHH---HHHHh----cCHHHHhcC--------Ccccc--HHHHHHHHHHHHhhCCccc
Confidence 23332221 1111111111 1111 11110 111111100 00111 2678999999999999999
Q ss_pred HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCC-----CCcc-----cccccC-CCCchhHHHHHHH
Q 016873 161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL-----APNN-----LLTGFG-FYNPYWLIDIANA 229 (381)
Q Consensus 161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~-----v~~~-----Il~n~~-~~~~~~~~~~~~~ 229 (381)
|++.+.+++. .|+.+|+..++..+..++|+..=......-+.+ .+++ ++..+. ..+..+...+..+
T Consensus 201 psl~~y~~~~---~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 277 (403)
T PRK15132 201 PSIVSYMGGN---IRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHL 277 (403)
T ss_pred HHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHH
Confidence 9999999764 478999999999999998876544333333322 1112 222211 0123455556677
Q ss_pred HHHHHHHHhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccc-hHHH
Q 016873 230 AIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDV 308 (381)
Q Consensus 230 ~~~i~~~~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~-f~~v 308 (381)
.-.+.+.+||-=...-.+|.+++.++++ ++ . ..|...-.+..+-.+.+|...|+ |...
T Consensus 278 fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~~-----~--------------~~r~~~~~l~flppli~a~~~P~~F~~a 336 (403)
T PRK15132 278 FADLALATSFLGVALGLFDYLADLFQRR--NT-----V--------------GGRLQTGLITFLPPLAFALFYPRGFVMA 336 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccC--cc-----c--------------cCCchhehhhHHHHHHHHHHhHHHHHHH
Confidence 7777888888656666788887776532 10 0 12445555667788899999996 8889
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhccCC---Ccch--hHHHHHHHHHHHHHHHH
Q 016873 309 VGILGAMGFWPLTVYFPIEMYKAQKKIG---RGTT--RWLGLQILNVSCFFITL 357 (381)
Q Consensus 309 l~LvGa~~~~~l~fi~P~l~~lkl~~~~---~~~~--~~~~~~~l~~~g~~~~v 357 (381)
++..|.. .+.+.+++|+++-.|.||.+ +++. .+..+++.+++|++..+
T Consensus 337 l~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~ 389 (403)
T PRK15132 337 LGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIG 389 (403)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHH
Confidence 9998875 79999999999999987544 2210 22334555555554433
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.23 E-value=1.3e-09 Score=107.20 Aligned_cols=285 Identities=14% Similarity=0.079 Sum_probs=175.8
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 81 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l 81 (381)
.++|+.+||.|+.+..+......++.+++|+--.|+.+++.++.. ... +.+++.-.++++++.-...+..+
T Consensus 75 tma~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~-~~~-------~i~~~~~~llF~~~~~~~v~~gt- 145 (415)
T PRK09664 75 TITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMN-LGY-------HANPRIVGICTAIFVASVLWISS- 145 (415)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhh-ccC-------CCcHHHHHHHHHHHHHHHHHhch-
Confidence 478999999999999999999999999999999999999887531 100 22333333455555555555443
Q ss_pred chhhHHH---HHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccch
Q 016873 82 DQVWWLS---IVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSI 158 (381)
Q Consensus 82 ~~l~~~S---~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~ 158 (381)
+...+.+ +.+.+.+ +.. .+ ......++. ..+.+.+.. ............++|++++||+.|+
T Consensus 146 ~~vd~~nr~l~~~~ii~--f~~-~~-~~l~~~i~~----~~L~~~~~~-------~~~~~~~~~i~~alPVl~~SFgfh~ 210 (415)
T PRK09664 146 LAASRITSLFLGLKIIS--FVI-VF-GSFFFQVDY----SILRDATST-------TAGTSYFPYIFMALPVCLASFGFHG 210 (415)
T ss_pred hHHHHHHHHHHHHHHHH--HHH-HH-HHHhhcccH----HHHhcCccc-------cccchHHHHHHHHHHHHHHhhhCCC
Confidence 3333333 1121111 111 11 111111100 001110000 0001112246679999999999999
Q ss_pred hhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhh--hhhh---------ccccCCCCCcccccccCCCCchhHHHHH
Q 016873 159 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC--GCMG---------YAAFGDLAPNNLLTGFGFYNPYWLIDIA 227 (381)
Q Consensus 159 ~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~--g~~G---------Y~~fG~~v~~~Il~n~~~~~~~~~~~~~ 227 (381)
++|++.+.+++. .|+.+|+...+..+..++|... ...| -.+.|++++.-+..-....+..+...+.
T Consensus 211 iIPsl~~y~~~d---~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~ 287 (415)
T PRK09664 211 NIPSLIICYGKR---KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCL 287 (415)
T ss_pred cchHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHH
Confidence 999999998753 4678899888888888888443 2222 1233444433111100011234555566
Q ss_pred HHHHHHHHHHhhheeccchHHHHHHHHhccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccc-hH
Q 016873 228 NAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FN 306 (381)
Q Consensus 228 ~~~~~i~~~~s~~l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~-f~ 306 (381)
++...+.+.+||-=...-.+|.+.+.++.+ |++ ..|...-.+..+-.+..|+..|+ |=
T Consensus 288 ~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~~~-------------------~~r~~~~~ltflPPl~~al~~P~gFl 346 (415)
T PRK09664 288 LVFSNLAVASSFFGVTLGLFDYLADLFKID--NSH-------------------GGRFKTVLLTFLPPALLYLIFPNGFI 346 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeehhhHhhhHHHHHHhhHHHH
Confidence 777777888888656666788888777542 210 12333344556677889999997 88
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHhccC
Q 016873 307 DVVGILGAMGFWPLTVYFPIEMYKAQKKI 335 (381)
Q Consensus 307 ~vl~LvGa~~~~~l~fi~P~l~~lkl~~~ 335 (381)
..++..|.. .+.+.-++|+++-.|.||+
T Consensus 347 ~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 347 YGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 999999997 5788889999999999864
No 14
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.06 E-value=4.6e-09 Score=103.59 Aligned_cols=295 Identities=9% Similarity=0.038 Sum_probs=172.8
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 81 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l 81 (381)
|++++.|||+++.+..+......+..+.+|....++.++...... .+.+ .+.+.+..+..+..+-.......
T Consensus 70 ~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~-~~~~-------~p~~~i~~lilv~il~~iv~~G~ 141 (397)
T TIGR00814 70 EVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQ-LGTA-------PPLRGLLSLALILILVAIMSFGE 141 (397)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC-------CcHHHHHHHHHHHHHHHHHHhcH
Confidence 788999999999999999999999999999999999988776531 1111 11221111111111122222345
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 016873 82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL 161 (381)
Q Consensus 82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~ 161 (381)
+.+..++-+-....+....+..+..+.+ ...++....| .......+...+++..++||.+|+.++
T Consensus 142 ~~i~r~~~il~~~~ii~l~~l~~~lip~--------~~~~~L~~~p-------~~~~~~~~i~~alpv~~~SF~~~~iIs 206 (397)
T TIGR00814 142 KLLFKIMGPLVFPLVLILVLLSLYLIPH--------WNGANLTTFP-------SFNGFLKTLWLTIPVMVFSFNHSPIIS 206 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCHHHHhcCC-------cccchHHHHHHHHHHHHHHHHccccch
Confidence 5555555332211111111111111111 1111111000 011223567889999999999999999
Q ss_pred HHHhhh----cCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCC-----Ccc--cccccC-CCCchhHHHHHHH
Q 016873 162 EIQDTI----RSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA-----PNN--LLTGFG-FYNPYWLIDIANA 229 (381)
Q Consensus 162 ~i~~~M----~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v-----~~~--Il~n~~-~~~~~~~~~~~~~ 229 (381)
+...+. ++|+...|+.+|+...+..+..++|+..-+..-...+++. ++| ++.... ..+..+...+...
T Consensus 207 sl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~ 286 (397)
T TIGR00814 207 SFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPI 286 (397)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHH
Confidence 997444 3332235678899999998888888776555555544322 122 111000 0112233334444
Q ss_pred HHHHHHHHhhheeccchHHHHHHHHhc-cCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHH
Q 016873 230 AIVVHLVGAYQVFCQPLFAFVEKWSAK-KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDV 308 (381)
Q Consensus 230 ~~~i~~~~s~~l~~~p~~~~ie~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~v 308 (381)
.-.+.+..||.=...-.+|.+++.+.+ +.++++. . +.+..+...-.+..+.++..|..=|++=++
T Consensus 287 f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~~~w~~~~~n~~il~~ 352 (397)
T TIGR00814 287 VAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKK--------I------NIRKLNRAIAIFIVLTTWIVAYINPSILSF 352 (397)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccc--------c------CHHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 455677777765666778888887732 1111110 0 111334455566678889999999999999
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhc
Q 016873 309 VGILGAMGFWPLTVYFPIEMYKAQK 333 (381)
Q Consensus 309 l~LvGa~~~~~l~fi~P~l~~lkl~ 333 (381)
++-+|+--...+.|++|+..-.|..
T Consensus 353 i~~~~gp~~a~i~~~~p~~~~~~v~ 377 (397)
T TIGR00814 353 IEALGGPIIAMILFLMPMYAIYKVP 377 (397)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHccH
Confidence 9988888889999999997777763
No 15
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.92 E-value=2.3e-07 Score=91.69 Aligned_cols=321 Identities=9% Similarity=0.106 Sum_probs=182.7
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 81 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l 81 (381)
|++++.|||.++.+..+.-.+..+-.+.+|.+.+.+.++..+... .+. + +.++....+++.+++....+..+
T Consensus 86 ~v~~~~lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~q-l~~----~--~~~r~l~slifv~~l~~iv~~G~- 157 (443)
T PRK13629 86 ETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQ-LGF----A--PLNRGFVALFLLLLMAFVIWFGK- 157 (443)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCc----C--CccHHHHHHHHHHHHHHHHHhhH-
Confidence 789999999999999999999999999999988888887754321 110 0 12333344444444444444443
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccc--ccccCCcccchhhHHHHHHHHHHHHHHhccchh
Q 016873 82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIG--TLTSAGTVTGTQKLWRSLQALGAIAFAYSFSII 159 (381)
Q Consensus 82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~ 159 (381)
+.+-.++-+ .+. ...++.+..+++ .++... ...+.+.+.+ ++ ............++|++.|||+-|+.
T Consensus 158 ~~v~kv~~~-Lv~--~~i~~l~~l~~~-LiP~w~-~~~L~~~~~~~~~~-----~~~~~~~~~l~~~iPv~v~SF~f~~i 227 (443)
T PRK13629 158 DLMVKVMSY-LVW--PFIASLVLISLS-LIPYWN-SAVIDQVDLGSLSL-----TGHDGILVTVWLGISIMVFSFNFSPI 227 (443)
T ss_pred HHHHHHHHH-HHH--HHHHHHHHHHHH-HHHHcC-HHHHhcCccccccc-----cccccHHHHHHHHHHHHHHHHhcccc
Confidence 222222211 010 001111111111 111100 0001110000 00 00011113467889999999999999
Q ss_pred hHHHHhhhcCC-------ccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCC-----Cccc--ccccC--CCC---c
Q 016873 160 LLEIQDTIRSP-------PAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA-----PNNL--LTGFG--FYN---P 220 (381)
Q Consensus 160 ~~~i~~~M~~P-------~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v-----~~~I--l~n~~--~~~---~ 220 (381)
+|+....+|+. +...|+.+|+..++..+..++|+..-+..-..-+++- +.|+ +..+. ..+ .
T Consensus 228 Issl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~ 307 (443)
T PRK13629 228 VSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGT 307 (443)
T ss_pred chHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccc
Confidence 99998885432 1115778999999998888888776554444444321 1222 22110 111 0
Q ss_pred -----hhHHHHHHHHHHHHHHHhhheeccchHHHHHHHHhc-c-CCCCccCcccccccCCCccccccchhHHHHHHHHHH
Q 016873 221 -----YWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-K-WPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVV 293 (381)
Q Consensus 221 -----~~~~~~~~~~~~i~~~~s~~l~~~p~~~~ie~~~~~-~-~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~ 293 (381)
.+...+..+.-.+.+..||-=...-.+|.++.+..+ . .++++. . +.+..+.....+..+
T Consensus 308 ~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~ 373 (443)
T PRK13629 308 KSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTK--------V------SLGKLNTISMIFIMG 373 (443)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--------c------CHHHHHHHHHHHHHH
Confidence 223344455556677888755555678888887732 1 111110 0 112345566667788
Q ss_pred HHHHHHHHccchHHHHHHhhhhhhhhHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHH
Q 016873 294 LTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFI 355 (381)
Q Consensus 294 ~~~~iA~~iP~f~~vl~LvGa~~~~~l~fi~P~l~~lkl~~~~~~~~~~~~~~~l~~~g~~~ 355 (381)
.++..|..=|++=++++-+|+-....+.|++|+..-.|...-++++.+. .|+.+.+.|++.
T Consensus 374 ~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~~~-~n~fv~~~Gl~~ 434 (443)
T PRK13629 374 STWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRL-DNVFVTVIGLLT 434 (443)
T ss_pred HHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhCCCc-hhHHHHHHHHHH
Confidence 8899999999999999988888889999999998777764323322222 366666666653
No 16
>PRK11021 putative transporter; Provisional
Probab=98.46 E-value=0.0001 Score=73.38 Aligned_cols=64 Identities=16% Similarity=0.422 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh--hccccCC
Q 016873 139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM--GYAAFGD 205 (381)
Q Consensus 139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~--GY~~fG~ 205 (381)
++.++..++...+|+|.|-......-+|+|||+ |+++|+...+..++.++|...... +...++|
T Consensus 175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~ 240 (410)
T PRK11021 175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVVVLHFPAYGD 240 (410)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 445678889999999999999999999999994 899999999999999999987654 3343444
No 17
>PRK10746 putative transport protein YifK; Provisional
Probab=98.43 E-value=9.4e-05 Score=74.82 Aligned_cols=61 Identities=15% Similarity=0.042 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccc
Q 016873 139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA 202 (381)
Q Consensus 139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~ 202 (381)
.+.++..++...+|+|.|-..+...-+|+|||+ |+++|+...+...+.++|.......-..
T Consensus 198 g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~---k~iP~Ai~~~~~~i~~~yv~~~~~~~~~ 258 (461)
T PRK10746 198 GWKGFLTALCIVVASYQGVELIGITAGEAKNPQ---VTLRSAVGKVLWRILIFYVGAIFVIVTI 258 (461)
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHeee
Confidence 345677899999999999999999999999994 8999999888888888887764433333
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=98.43 E-value=0.0001 Score=74.01 Aligned_cols=57 Identities=11% Similarity=0.065 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhc
Q 016873 141 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 200 (381)
Q Consensus 141 ~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY 200 (381)
.++..++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|+.......
T Consensus 189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 189 SAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999995 89999999999999999988765433
No 19
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.42 E-value=6e-05 Score=75.87 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873 140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 198 (381)
Q Consensus 140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~ 198 (381)
+.++..++....|+|.|-......-+|+|||+ |+.+|+...+..++.++|.++.+.
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~ 245 (445)
T PRK10644 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTA 245 (445)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence 34566778899999999999999999999995 899999999999999999888765
No 20
>TIGR00909 2A0306 amino acid transporter.
Probab=98.40 E-value=0.00016 Score=72.35 Aligned_cols=174 Identities=10% Similarity=0.046 Sum_probs=104.1
Q ss_pred hhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCccc---Cchh--h-HHHHHHHHHhh
Q 016873 3 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMS---SNGY--M-ITFGIIEVLFS 76 (381)
Q Consensus 3 l~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~---~~~~--~-ii~~~v~~pl~ 76 (381)
-.++.+||+...++.+..++.....+..+....++.+..+.+.. ..+.++ .+... ...+ . +++..+...+
T Consensus 72 ~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~l- 147 (429)
T TIGR00909 72 YAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGV--GLDLPA-VLTAKPGNGGVFNLPALLIVLFLTYI- 147 (429)
T ss_pred eHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cccCch-hhhcCCcccccccHHHHHHHHHHHHH-
Confidence 46788999999999999888887777778888888877776521 001100 00000 0011 1 1121222222
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhcc
Q 016873 77 QIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSF 156 (381)
Q Consensus 77 ~l~~l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~ 156 (381)
-.+..+..+.++.+.....+...++.++....+... .+ +.+ . .+.+..+...++...+|+|.|
T Consensus 148 ~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~--------~~--~~~------~-~~~~~~~~~~~~~~~~~af~G 210 (429)
T TIGR00909 148 LYLGAKESGKVNDILVVLKVAALLLFAALGAIHFAS--------NN--YTP------F-MPMGFGGVGAATALVFFAFIG 210 (429)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcH--------Hh--cCC------C-CCCcHHHHHHHHHHHHHHHhh
Confidence 234456666665554443333222222222221100 01 110 0 112334667889999999999
Q ss_pred chhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhc
Q 016873 157 SIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 200 (381)
Q Consensus 157 ~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY 200 (381)
........+|+|||+ |+.+|++..+..++.++|........
T Consensus 211 ~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 211 FEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred HHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999994 88999999999999999998865444
No 21
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.36 E-value=9.6e-05 Score=74.68 Aligned_cols=167 Identities=12% Similarity=0.017 Sum_probs=89.1
Q ss_pred hhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCch
Q 016873 4 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 83 (381)
Q Consensus 4 ~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~ 83 (381)
+++.+||...+++.+...+.....+.+.....++.++...+ + .+...+.++...+...+.. ...+.
T Consensus 82 ~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p------~-------~~~~~~~~i~~~~~~~lN~-~gv~~ 147 (456)
T PRK10238 82 AYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP------E-------IPTWVSAAVFFVVINAINL-TNVKV 147 (456)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------c-------CcHHHHHHHHHHHHHHHHH-HhHHH
Confidence 46789999999999999888887777777666766554321 1 1111122222111211111 12333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhh---hhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873 84 VWWLSIVAAIMSFTYSTAGLGLGI---GKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 160 (381)
Q Consensus 84 l~~~S~i~~~~~~~~~~iiv~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~ 160 (381)
++.+..+..+..+...++.++..+ ..+...+ +...++. ++ + ..-.+..+.++..+++..+|+|.|-...
T Consensus 148 ~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~--~~~~~~~-~~-~----~~~~~~g~~~~~~~~~~~~~af~G~e~~ 219 (456)
T PRK10238 148 FGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGP--QATVSNL-WD-Q----GGFLPHGFTGLVMMMAIIMFSFGGLELV 219 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--Ccccccc-CC-C----CCCccccHHHHHHHHHHHHHHhcCHHHH
Confidence 333333222222111111111111 1111111 0111110 00 0 0001223345667788899999999999
Q ss_pred HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhh
Q 016873 161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC 195 (381)
Q Consensus 161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~ 195 (381)
...-+|+|||+ |+.+|++..+.....++|+..
T Consensus 220 ~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 220 GITAAEADNPE---QSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999994 889999988887777777654
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=98.36 E-value=0.00016 Score=73.21 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccC
Q 016873 141 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 204 (381)
Q Consensus 141 ~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG 204 (381)
.++..++....|+|.|-.....+-+|+||+ |+++|++..+...+..+|..+.+..+...+
T Consensus 195 ~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 195 TQVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 345578889999999999988888888875 799999999999999999998876554444
No 23
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=98.34 E-value=0.00014 Score=73.27 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873 139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 198 (381)
Q Consensus 139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~ 198 (381)
.+.++..++...+|+|.|-......-+|+|||+ |+++|+...++..+..+|....+.
T Consensus 179 g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 179 GFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999994 889999999999999999886554
No 24
>PRK10249 phenylalanine transporter; Provisional
Probab=98.33 E-value=0.00022 Score=72.16 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873 139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 198 (381)
Q Consensus 139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~ 198 (381)
.+.++..++...+|+|.|-......-+|+|||+ |+.+|++..+...+..+|......
T Consensus 207 g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~~ 263 (458)
T PRK10249 207 GWNGLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLVV 263 (458)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677899999999999999999999999994 889999999999999999775443
No 25
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=98.32 E-value=0.00014 Score=75.20 Aligned_cols=183 Identities=11% Similarity=0.048 Sum_probs=99.3
Q ss_pred hhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhc-c-cccC--CCCCCCcccCchhhHHHH-HHHHHhhcC
Q 016873 4 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSN-C-FQKS--GGKDPCHMSSNGYMITFG-IIEVLFSQI 78 (381)
Q Consensus 4 ~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~-~-~~~~--~~~~~~~~~~~~~~ii~~-~v~~pl~~l 78 (381)
.++.+|+...+++.+..++.....+.+.....++.+..++... . +... ..+.+ ........+... ++.+-..-.
T Consensus 99 ~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln~ 177 (557)
T TIGR00906 99 SYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLLS 177 (557)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHHH
Confidence 4678999988999998887766555554444555555444310 0 0000 00000 011111111111 111112233
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccch
Q 016873 79 PDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSI 158 (381)
Q Consensus 79 ~~l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~ 158 (381)
+..+..+.+..+..+..+...+++++.+..+...+ .....+. .++ +.-.+..+.+++.+....+|+|.|-.
T Consensus 178 ~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~---~~~~~~~-~~~-----~~f~p~g~~g~l~g~~~~~faf~Gfd 248 (557)
T TIGR00906 178 FGVKESAWVNKIFTAINILVLLFVIIAGFTKADVA---NWSITEE-KGA-----GGFMPYGFTGVLSGAATCFFAFIGFD 248 (557)
T ss_pred hchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCch---hcccccc-ccC-----CCCCCcchHHHHHHHHHHHHHHhhHH
Confidence 45666666665444433332222333333222110 0110000 000 00112234577889999999999999
Q ss_pred hhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhh
Q 016873 159 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG 199 (381)
Q Consensus 159 ~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~G 199 (381)
.+...-+|+|||+ |+++|+...++.+++++|..+.+.-
T Consensus 249 ~v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 249 AIATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred HHHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999995 8899999999999999999886543
No 26
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.31 E-value=0.00028 Score=71.64 Aligned_cols=176 Identities=8% Similarity=0.013 Sum_probs=95.9
Q ss_pred hhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHH-HHHhhcCCCC
Q 016873 3 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGII-EVLFSQIPDF 81 (381)
Q Consensus 3 l~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v-~~pl~~l~~l 81 (381)
-+++.+||+...++.+...........++.....+.+..+.+. +.. +. .. ..+.....++ ..-..-.+..
T Consensus 78 y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~--~~~---~~--~~--~~~~~~~~~~~~~~~ln~~Gi 148 (473)
T TIGR00905 78 YAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPL--FGS---GN--PV--PSILGASVLLWVFTFLVLRGV 148 (473)
T ss_pred hHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcC---CC--cH--HHHHHHHHHHHHHHHHHHhCH
Confidence 4678999999999999887766655566666655656555442 100 00 00 1111111111 1111223445
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 016873 82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL 161 (381)
Q Consensus 82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~ 161 (381)
+..+.+..+..+..+...++.++..+.....+. .. .+ +.++ ..+.....+.++..++...+|+|.|-....
T Consensus 149 ~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~---~~-~~--~~~~---~~p~~~~~~~~~~~~~~~~~~af~G~e~~~ 219 (473)
T TIGR00905 149 RQAAFINTITTIAKLIPLFLFIIIGWFWFKLDL---FT-AD--FWGH---DVPSLGSVFSQVKNTMLVTLWVFIGIEGAV 219 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh---cc-cc--cCcc---CCCcccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 555544444333222211122222221110100 00 00 0000 000011233456778899999999999999
Q ss_pred HHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhc
Q 016873 162 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 200 (381)
Q Consensus 162 ~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY 200 (381)
..-+|+|| + |+.+|++..+..++.++|........
T Consensus 220 ~~a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 220 VSSGRAKN-K---SDVGKATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred HHHHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 5 89999999999999999988866533
No 27
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=98.30 E-value=0.00047 Score=70.01 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873 140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 198 (381)
Q Consensus 140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~ 198 (381)
+.++..++...+|+|.|-......-+|+|||+ |+.+|++..+...+..+|....+.
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999999999999999995 899999999999999999987543
No 28
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.29 E-value=0.00025 Score=71.49 Aligned_cols=62 Identities=21% Similarity=0.136 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccC
Q 016873 140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 204 (381)
Q Consensus 140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG 204 (381)
+.++..++...+|+|.|-......-+|+|||+ |+.+|+...+......+|+..........+
T Consensus 200 ~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p 261 (452)
T TIGR01773 200 IGAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFIVVALLP 261 (452)
T ss_pred HHHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHeeEeC
Confidence 34678899999999999999999999999994 889999988888888888876554443333
No 29
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.28 E-value=0.00023 Score=71.49 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhcccc
Q 016873 139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAF 203 (381)
Q Consensus 139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~f 203 (381)
+..++..++....|+|.|-......-+|+|||+ |+.+|+...+...+.++|+...+.-....
T Consensus 185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456788899999999999999999999999994 89999999999999999998877544333
No 30
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.28 E-value=0.00042 Score=70.02 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873 140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 198 (381)
Q Consensus 140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~ 198 (381)
+.+...++....|+|.|-......-+|+|||+ |+.+|+...+...+..+|......
T Consensus 198 ~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 198 WLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677889999999999999999999999994 889999988877777788666443
No 31
>PRK15049 L-asparagine permease; Provisional
Probab=98.27 E-value=0.00033 Score=71.61 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhcccc
Q 016873 139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAF 203 (381)
Q Consensus 139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~f 203 (381)
.+.+.+.++...+|+|.|-..+...-+|+|||+ |+.+|++..++..+.++|+..........
T Consensus 218 g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~~~~ 279 (499)
T PRK15049 218 GLLPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVLLVMLL 279 (499)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 344566677889999999999999999999994 88999999888888888877655443333
No 32
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.27 E-value=0.00021 Score=71.82 Aligned_cols=168 Identities=7% Similarity=-0.059 Sum_probs=92.0
Q ss_pred hhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCch
Q 016873 4 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 83 (381)
Q Consensus 4 ~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~ 83 (381)
+++.+||....++.+...+.......++....++.++...+. .....+.++...+...+ -.+..+.
T Consensus 77 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~~~~~~~~~~~~~~l-n~~g~~~ 142 (442)
T TIGR00908 77 ARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPGWLAALVFYIVFIGI-NILGVGE 142 (442)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CchhHHHHHHHHHHHHH-HHHHHHH
Confidence 577899999999999888877766777777777776655321 01111111111111111 1223344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhHHH
Q 016873 84 VWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEI 163 (381)
Q Consensus 84 l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~~i 163 (381)
.+.+..+..+..+... ++++.......+ . .+. .++ ++.+. +...+..+.+++.++...+|+|.|.......
T Consensus 143 ~~~i~~~~~~~~~~~l-~i~~~~~~~~~~-~-~~~-~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~ 213 (442)
T TIGR00908 143 AAKLEFVVTAVAIIAL-GVFIGAMVPHFD-S-ANL-FNG-PQTGA----SSFLPGAYVGVFAAIPFAIWFFLAVEGVAMA 213 (442)
T ss_pred HHhHHHHHHHHHHHHH-HHHHHHHhccCC-H-HHh-ccC-CccCC----CCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443332222111111 111111110000 0 000 000 00000 0011223456788888999999999999999
Q ss_pred HhhhcCCccccccchhhhhhhHHHHHHHHhhhhh
Q 016873 164 QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 197 (381)
Q Consensus 164 ~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~ 197 (381)
-+|+|||+ |+.+|++..+..++..+|...-.
T Consensus 214 aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 214 AEETKNPK---RDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence 99999994 88999999999988888876644
No 33
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.24 E-value=0.00042 Score=70.30 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhc
Q 016873 139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 200 (381)
Q Consensus 139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY 200 (381)
.+.++..++...+|+|.|-......-+|+|||+ |+++|+...+...+.++|......-+
T Consensus 209 g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 209 GLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 344678899999999999999999999999994 88999997777777888876655444
No 34
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.17 E-value=0.0004 Score=69.91 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873 140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 198 (381)
Q Consensus 140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~ 198 (381)
+.+...++...+|+|.|-......-+|+|||+ |+.+|++..++.++.++|......
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHH
Confidence 44667888999999999999999999999994 899999999999999999887654
No 35
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.15 E-value=0.00012 Score=73.14 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=99.2
Q ss_pred hhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHH-HH--HHHHHhhcCCC
Q 016873 4 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMIT-FG--IIEVLFSQIPD 80 (381)
Q Consensus 4 ~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii-~~--~v~~pl~~l~~ 80 (381)
+++++||+...++.+...+.....+.++....++.+...+.. +.+ . ++....++ .. +....+ -.+.
T Consensus 68 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~-~~~~~~~i~~~~~~~~~~l-~~~g 136 (426)
T PF13520_consen 68 VSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP-----DLN----P-SPWPQFLIAIILILLFTLL-NLLG 136 (426)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG-----GGT----C-SHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred hhhcccccchhcccceeEEEeeccccccccchhhhhhhcccc-----ccc----c-ccchheeeeecccccceEe-eech
Confidence 577899998899999888888887777777777766544321 100 0 01111111 11 112222 3344
Q ss_pred CchhhHHHHHHHHHHH-HHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchh
Q 016873 81 FDQVWWLSIVAAIMSF-TYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSII 159 (381)
Q Consensus 81 l~~l~~~S~i~~~~~~-~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~ 159 (381)
.+..+.+..+..+..+ ...++.++..+.....+.....+....+..+ ....+.+.+++..+|+|.|-..
T Consensus 137 ~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~G~e~ 206 (426)
T PF13520_consen 137 IKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFP----------SGWPGFLAGFSVAFFAFSGFEA 206 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSC----------SSSSHHHHHHHHHGGGGTTTTH
T ss_pred hhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCC----------ccccchhhHHHHHHhhcccccc
Confidence 5566665544444333 2222222233332211100000000000110 1111357889999999999999
Q ss_pred hHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCC
Q 016873 160 LLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 205 (381)
Q Consensus 160 ~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~ 205 (381)
....-+|+|| |+.+|++..+..++.++|......-....++
T Consensus 207 ~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 207 IASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPD 247 (426)
T ss_dssp HHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred cccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccc
Confidence 9999999875 5899999999999999999986665555544
No 36
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.15 E-value=0.00058 Score=69.29 Aligned_cols=57 Identities=18% Similarity=0.118 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhh
Q 016873 140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG 199 (381)
Q Consensus 140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~G 199 (381)
..+...++...+|+|.|-......-+|+|||+ |+++|++..+...+..+|+......
T Consensus 205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 205 GLPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788889999999999999999999995 8899999999999999998876543
No 37
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.12 E-value=0.00096 Score=67.72 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=44.2
Q ss_pred HHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccC
Q 016873 149 AIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 204 (381)
Q Consensus 149 ~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG 204 (381)
.+.|+|.|-......-+|+|||+ |+.+|++..+..++..+|....+.-...-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 46789999999999999999995 899999999999999999876654333333
No 38
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.11 E-value=0.00024 Score=69.87 Aligned_cols=293 Identities=13% Similarity=0.146 Sum_probs=160.0
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHH--HHH--HHHhhc
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITF--GII--EVLFSQ 77 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~--~~v--~~pl~~ 77 (381)
|.+++.+|+|+.+++++.-...-.-++++=+.-+|.-++..++ +. ..|+... .++ .+=+.-
T Consensus 81 ~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP-------------~v--P~Wv~al~~~~l~~~~NL~s 145 (462)
T COG1113 81 DYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFP-------------DV--PQWVFALAAVVLLLAVNLIS 145 (462)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CC--cHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999998888888888888876665432 11 2333332 222 222445
Q ss_pred CCCCchhh-HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhcc
Q 016873 78 IPDFDQVW-WLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSF 156 (381)
Q Consensus 78 l~~l~~l~-~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~ 156 (381)
.|.+.++- |++++=++..+.+.++.++..+ .+..++......++.. + +.--.+..+.+++.++-+.+|||+|
T Consensus 146 Vk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~-~g~~~~~~~~g~snl~-~-----hGGffP~G~~g~~~~~~~v~Faf~G 218 (462)
T COG1113 146 VKVFGELEFWFALIKVAAIIAFIVVGIVLLF-GGFGGGGGAAGFSNLW-D-----HGGFFPNGFLGFLSALQIVMFAFGG 218 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCCCCccccccc-c-----CCCcCCCchHHHHHHHHHHHHHHhh
Confidence 66677777 6676655554444333333322 2332221111222110 0 0011366677889999999999999
Q ss_pred chhhHHHHhhhcCCccccccchhhhhhhHHHHHHHH-----hhhhhhhccccCCCCCcc--cccccCCCCchhHHHHHHH
Q 016873 157 SIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFY-----LLCGCMGYAAFGDLAPNN--LLTGFGFYNPYWLIDIANA 229 (381)
Q Consensus 157 ~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly-----~~~g~~GY~~fG~~v~~~--Il~n~~~~~~~~~~~~~~~ 229 (381)
...+=.--+|-+||| |..+|+.+--..=+.+.| +++.+.-+-.++++.++- +...++. .+...+.|.
T Consensus 219 iElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi---~~Aa~i~N~ 292 (462)
T COG1113 219 IELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGI---PFAAGIMNF 292 (462)
T ss_pred HHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCC---cccccceeE
Confidence 999988899999995 778888765544444444 555666666677765542 2222221 122223333
Q ss_pred HHHHHHHHhhheeccchHHHHHHHHhcc-CCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccc--hH
Q 016873 230 AIVVHLVGAYQVFCQPLFAFVEKWSAKK-WPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF--FN 306 (381)
Q Consensus 230 ~~~i~~~~s~~l~~~p~~~~ie~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~--f~ 306 (381)
.++.....+.-=-++..-+.+..+-.+. -|+ .+ .+- ++++..+.-++..+....++.++....|. |+
T Consensus 293 VVLtAa~S~~NSglystsRmL~~la~~g~APk-~~-~kl--------sk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~ 362 (462)
T COG1113 293 VVLTAALSALNSGLYSTSRMLYSLAKQGDAPK-AF-AKL--------SKRGVPVNAILLSAVVLLLGVVLNYILPEKVFE 362 (462)
T ss_pred EEeechhhcccccccccchHHHHHhhcCcccH-hH-hhc--------cccCCCHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 2222222222111112233333332111 111 00 000 11111144566777778888888999993 45
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHhcc
Q 016873 307 DVVGILGAMGFWPLTVYFPIEMYKAQKK 334 (381)
Q Consensus 307 ~vl~LvGa~~~~~l~fi~P~l~~lkl~~ 334 (381)
.+.+..+.... ....+=.+.|+|.||
T Consensus 363 ~v~s~s~~~~l--~vW~~I~~s~l~~rk 388 (462)
T COG1113 363 LVTSSSGLGLL--FVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 55554443322 222233678888876
No 39
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.05 E-value=0.0023 Score=70.06 Aligned_cols=184 Identities=15% Similarity=0.053 Sum_probs=97.8
Q ss_pred hhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCc
Q 016873 3 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFD 82 (381)
Q Consensus 3 l~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~ 82 (381)
..+++||+.....+.++.+..+...+..|.+..++.+..+++..+.. ...++ ....+.+.++..+++..+.+ ...+
T Consensus 148 yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~--~~~~~-~~~~~iia~i~l~ll~~In~-~Gvk 223 (953)
T TIGR00930 148 LISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSK--IMVDP-INDIRIYGTVTVVVLLGISF-AGME 223 (953)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--cccCc-cccchHHHHHHHHHHHHHHH-hhHH
Confidence 35678999988888999998888888899999999888876531110 00000 01112222222222222222 2233
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcc-cchhhHH-HHHHHHHHHHHHhccchhh
Q 016873 83 QVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTV-TGTQKLW-RSLQALGAIAFAYSFSIIL 160 (381)
Q Consensus 83 ~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~a~g~i~faf~~~~~~ 160 (381)
..+.+..+-.+..+...+.+++.++... .+ .......+.+..+ ...+. +...+.. +++..++++++||.|-...
T Consensus 224 ~~ak~q~vl~vi~ll~ll~~iig~~~~~-~~-~~~~g~~~~~~~~--f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~ag 299 (953)
T TIGR00930 224 WENKAQVLFLVIVLLSILNIFVGTIIPA-FD-KPAKGFFGLGNEI--FSENFIPGIPGPEGGFFSLFGIFFPSVTGILAG 299 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeecC-CC-CCccceeeccchh--hhhccCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 3333332221111111111111111100 00 0000011100000 00000 0011111 2566788888899999999
Q ss_pred HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhh
Q 016873 161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 197 (381)
Q Consensus 161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~ 197 (381)
..+-+|+|||+ |+.+|++..++.+++++|+++.+
T Consensus 300 an~sgElKnP~---r~IPratl~ai~i~~vlYllv~~ 333 (953)
T TIGR00930 300 ANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVV 333 (953)
T ss_pred HHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999995 89999999999999999999876
No 40
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.01 E-value=0.0017 Score=66.45 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhh
Q 016873 144 LQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 197 (381)
Q Consensus 144 ~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~ 197 (381)
...+..++|+|.|-......-+|||||+ |+++|++..+..++..+|....+
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHHH
Confidence 3445556899999999999999999995 89999999999888888876443
No 41
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.95 E-value=0.0037 Score=63.58 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhh
Q 016873 141 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC 195 (381)
Q Consensus 141 ~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~ 195 (381)
++...++-...|+|.|-......-+|+|||+ |+++|++..+..+..+++.+.
T Consensus 217 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~ 268 (482)
T TIGR00907 217 FAFLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCF 268 (482)
T ss_pred hhhhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHH
Confidence 3456666778899999999999999999995 899999999887766544433
No 42
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.95 E-value=0.0014 Score=67.03 Aligned_cols=57 Identities=19% Similarity=0.175 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhh
Q 016873 140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG 199 (381)
Q Consensus 140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~G 199 (381)
..++..++...+|+|.|-.......+|+|||+ |+.+|++..+..++.++|+...+.-
T Consensus 234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~ 290 (501)
T TIGR00911 234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAY 290 (501)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999994 8899999999999999999986543
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.88 E-value=0.0032 Score=63.29 Aligned_cols=179 Identities=13% Similarity=0.142 Sum_probs=106.6
Q ss_pred hhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHh--hcCCCC
Q 016873 4 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLF--SQIPDF 81 (381)
Q Consensus 4 ~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl--~~l~~l 81 (381)
+++.+||+...++.+...+.......+..+..++.+..+.+... .. ..+...+.++..++...+ .-.+..
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~ln~~G~ 153 (466)
T COG0531 82 AKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG----LL----SIGPLLIILIALALIALLTLLNLRGI 153 (466)
T ss_pred hhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch----hh----cCCchHHHHHHHHHHHHHHHHHHhhH
Confidence 57889988878889998888888888888888876666544210 00 001112222222222111 123344
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 016873 82 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL 161 (381)
Q Consensus 82 ~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~ 161 (381)
+..+....+..+..+...+++.+..+.....+. ..... .. ........+...+++...++|.|-....
T Consensus 154 ~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~---~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 221 (466)
T COG0531 154 KASAKINSIITILKIIILLIFIILGLFAFGFSN---GNLFA-PF--------NPGGGSFGGILAAILLAFFAFTGFEAIA 221 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc---cccCC-Cc--------ccccchHHHHHHHHHHHHHHhhcHHHHH
Confidence 444444444433333322223223233221110 00000 00 0011222357788999999999999999
Q ss_pred HHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCC
Q 016873 162 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 205 (381)
Q Consensus 162 ~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~ 205 (381)
+.-+|+|||+ |+.+|+...++.++..+|......-....++
T Consensus 222 ~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 222 TLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 9999999994 7899999999999999999988877777665
No 44
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.86 E-value=0.0012 Score=65.97 Aligned_cols=293 Identities=13% Similarity=0.113 Sum_probs=148.2
Q ss_pred hhcCCCcceeehHhHHHHHH-hHHHHHHHhhhhh-HHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCch
Q 016873 6 ANLGGKKVIFCGLIQYLNLF-GVAIGYTIAASVS-MMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 83 (381)
Q Consensus 6 ~~~G~~~~~~v~~~~~i~~~-g~~i~ylI~~g~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~ 83 (381)
++||+.......+.-.+... ..+..+-+..+|= +++.++ .|+.++..--+ .+..++-+....+..+
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-----------~c~~p~~~~~l-la~~~l~~lt~~n~~~ 153 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-----------LCDVPRVASKL-LAAALLVLLTLINSFS 153 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-----------CCCCchHHHHH-HHHHHHHHHHHHhhhh
Confidence 56777654444444333333 3335566666663 444432 13333332222 3333333344566777
Q ss_pred hhHHHHHHHHHHHH---HHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873 84 VWWLSIVAAIMSFT---YSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 160 (381)
Q Consensus 84 l~~~S~i~~~~~~~---~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~ 160 (381)
+++.+.+=.++++. .+.++++.+++.............+.+ + ...+.-+...|+=.-.|||.|=..+
T Consensus 154 V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~-g---------~~~~~g~i~lafysglfa~~GWd~l 223 (479)
T KOG1287|consen 154 VKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFE-G---------SDTDVGNIALAFYSGLFAFSGWDYL 223 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccc-c---------CcCchHHHHHHHHHhhhcccCchhh
Confidence 88777665555442 233333344442222111000000010 0 1122234667888889999999999
Q ss_pred HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCCcccccc------cCC-CCchhHHHHHHHHHHH
Q 016873 161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTG------FGF-YNPYWLIDIANAAIVV 233 (381)
Q Consensus 161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~~~Il~n------~~~-~~~~~~~~~~~~~~~i 233 (381)
--+-+|+||| +|+++|+...++.+++++|+.+=+..+.+-- .+.++.+ ++. ..+.+. -.+.+++.+
T Consensus 224 N~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~Val 296 (479)
T KOG1287|consen 224 NYVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILGVFA-WAIPFSVAL 296 (479)
T ss_pred ccchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhccchH-HHHHHHHHH
Confidence 9999999999 4999999999999999999998775554432 2233222 000 001121 222333344
Q ss_pred HHHHhhheeccchHHHHHHHHh-ccCCCCccCcccccccCCCccccccchhHHHHHHHHHHHHHHHHHHccchHHHHHHh
Q 016873 234 HLVGAYQVFCQPLFAFVEKWSA-KKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGIL 312 (381)
Q Consensus 234 ~~~~s~~l~~~p~~~~ie~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~iP~f~~vl~Lv 312 (381)
..+++.--.+.-..+.+...-+ .+.|+. + +.. .+++. ..+ ...++..+...+...+.+++.+++.+
T Consensus 297 S~~G~~n~~ifs~SR~~~~~areG~LP~~-~-s~i--------~~~~~-TP~--~allf~~~~~i~~~~~~d~~~LIny~ 363 (479)
T KOG1287|consen 297 SLIGSLNSVIFSSSRLFYAGAREGHLPAF-F-SMI--------SVRRF-TPR--PALLFSGLLSIVLSLIGDFDQLINYV 363 (479)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHccCccHH-H-Hhh--------cCCCC-CCh--HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444432222222112211110 111210 0 000 00000 001 11222333344445566899999998
Q ss_pred hhhhhhhHHHHHHHHHHHHhccCCCcch
Q 016873 313 GAMGFWPLTVYFPIEMYKAQKKIGRGTT 340 (381)
Q Consensus 313 Ga~~~~~l~fi~P~l~~lkl~~~~~~~~ 340 (381)
+=.......+.+=+++|++.++++..++
T Consensus 364 sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 364 SFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 8887777888888999999887665433
No 45
>PRK10836 lysine transporter; Provisional
Probab=97.84 E-value=0.0085 Score=61.10 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccc
Q 016873 140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA 202 (381)
Q Consensus 140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~ 202 (381)
+.+.+.+.....|+|.|-......-+|+|||+ |+.+|++..++..+..+|......-...
T Consensus 204 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 204 FAAMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 33455556667899999999999999999995 8999999999999999999776543333
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=97.66 E-value=0.054 Score=55.03 Aligned_cols=55 Identities=13% Similarity=-0.097 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873 141 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 198 (381)
Q Consensus 141 ~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~ 198 (381)
..+..+....+|+|.|-.....+-+|+|||+ |+.+|++..+..+...+|...-+.
T Consensus 213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~~ 267 (475)
T TIGR03428 213 GAFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMILG 267 (475)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778899999999999999999995 899999999998887655554443
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.63 E-value=0.03 Score=57.20 Aligned_cols=55 Identities=22% Similarity=0.201 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh
Q 016873 141 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 198 (381)
Q Consensus 141 ~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~ 198 (381)
.+...++....|+|.|-......-+|+|||+ |+.+|++..+...+..+|....+.
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~~ 265 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIFL 265 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 3566778889999999999999999999994 889999999999999999876443
No 48
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=97.53 E-value=0.0041 Score=60.63 Aligned_cols=172 Identities=15% Similarity=0.147 Sum_probs=98.1
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHH-HHHHHHhhcCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITF-GIIEVLFSQIPD 80 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~-~~v~~pl~~l~~ 80 (381)
|..++++||+...++.+....+.+..+..-.-..+|.++... .+ + ...|.+.. .++..-....+.
T Consensus 68 ~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~-~---------tp~~~~~l~~l~~~~~~~~~G 133 (359)
T TIGR00912 68 EILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYL----LP-R---------TPIIVIIILIIIVSIYIVRKG 133 (359)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC-C---------CCHHHHHHHHHHHHHHHHHcc
Confidence 578899999988888888777777666655555666554321 11 1 11222221 111112223356
Q ss_pred CchhhHHHHHHHHHHHHH-HHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHH-HHHHHHhccch
Q 016873 81 FDQVWWLSIVAAIMSFTY-STAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQAL-GAIAFAYSFSI 158 (381)
Q Consensus 81 l~~l~~~S~i~~~~~~~~-~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-g~i~faf~~~~ 158 (381)
++..+.++.+-....+.. ..+.......+ ...++. .| . ...+..+...+. ....++|++..
T Consensus 134 i~~i~r~~~i~~~~~i~~~~~il~~~~~~~--------~~~~~l--~P------~-~~~g~~~~~~~~~~~~~~~f~g~~ 196 (359)
T TIGR00912 134 IEVLLRTAEILLIIFLILFILVLILLAPKL--------GNIKNL--LP------V-LENGLSPILKGAYPVVTFAFGEIE 196 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------ccHHHc--cC------c-cccCcHHHHhhhhHHhhhhhHHHH
Confidence 777776665443322221 01111111110 111111 01 0 111222333333 46788999888
Q ss_pred hhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCC
Q 016873 159 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAP 208 (381)
Q Consensus 159 ~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~ 208 (381)
.......+++|| |+.+|+...+..+...+|..+-+..-..+|.+..
T Consensus 197 i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~ 242 (359)
T TIGR00912 197 IFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVT 242 (359)
T ss_pred HHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHh
Confidence 888888899987 5799999999999999999888887888886443
No 49
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=96.90 E-value=0.0042 Score=63.09 Aligned_cols=64 Identities=23% Similarity=0.228 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCC
Q 016873 139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 205 (381)
Q Consensus 139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~ 205 (381)
++.+++.++...+++|.|-......-+|.|||+ |+.+|+...++....++|.......=...|.
T Consensus 198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~ 261 (478)
T PF00324_consen 198 GFSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATLLSVLRIGVFYVLTSYALTLAVPY 261 (478)
T ss_pred chhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhhhhhhhhhhhhhhhhhhcccccCc
Confidence 456788999999999999999999999999994 8999999999999999998877655455553
No 50
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=96.88 E-value=0.11 Score=52.35 Aligned_cols=190 Identities=16% Similarity=0.134 Sum_probs=99.3
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCc--hhhHHHHHHHHHhhcCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSN--GYMITFGIIEVLFSQIP 79 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~ii~~~v~~pl~~l~ 79 (381)
-+.|..||++|..+..++..+..+|=...-.+..|+.+..+++... +...+.++ +++.. ...+++.++.+++..+.
T Consensus 80 v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~-~~~~~~~~-~~t~~~~~~~~i~~~l~~~~~~~~ 157 (442)
T TIGR00800 80 VLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIF-PGYLHLGN-GMTTLELICFIIFWALVLVFLFFF 157 (442)
T ss_pred hhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc-ccccccCC-cccHHHHHHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999999988876521 10000000 01111 12233445555554444
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHH-HHhccch
Q 016873 80 DFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIA-FAYSFSI 158 (381)
Q Consensus 80 ~l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~-faf~~~~ 158 (381)
-.+-.......+....+....+.+ ....+.... .+..+. .+ +.+...+.+.+..++...+ +.-....
T Consensus 158 g~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~g~----~~~~~~--~~-----~~~~~~~~~~f~~~~~~~~g~~~s~~~ 225 (442)
T TIGR00800 158 GYKIRHLFEWLAVVPPFAAFGMLI-WALSKAHGK----GPLGEL--TG-----TLHGSTGAWAFLYALSLVIGSFATWAT 225 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCC----CccccC--CC-----CCCcchhHHHHHHHHHHHHHHHHHHHc
Confidence 433333344333322111111111 111111100 000000 00 0011223344444444422 2223345
Q ss_pred hhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccc----cCCCCCc
Q 016873 159 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA----FGDLAPN 209 (381)
Q Consensus 159 ~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~----fG~~v~~ 209 (381)
+.+..-+.+|+| |+-.+....++.........+|..+-.. +|+...+
T Consensus 226 ~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~ 276 (442)
T TIGR00800 226 NAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWS 276 (442)
T ss_pred CchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 778988999887 3334446667777777777777777655 8765433
No 51
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=96.58 E-value=0.31 Score=48.16 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=96.5
Q ss_pred hhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCc
Q 016873 3 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFD 82 (381)
Q Consensus 3 l~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~ 82 (381)
+.|..||++|..+..+...+...|=-..-....|+.++.+.+.. ++. .+...+.++++++..+.+.. -.+
T Consensus 63 ~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~-~~~--------~~~~~~~~i~~~l~~~~~~~-G~~ 132 (386)
T TIGR02358 63 SLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRL-FGE--------ESPMLWILIVGILVTLWLLS-GPL 132 (386)
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC--------CchHHHHHHHHHHHHHHHHH-HHH
Confidence 57899999999999999999999999999999999999987641 110 11223444555555555543 356
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHH-HHhccchhhH
Q 016873 83 QVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIA-FAYSFSIILL 161 (381)
Q Consensus 83 ~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~-faf~~~~~~~ 161 (381)
.++++..++........+...+....+. +. .+.. .+ . ...++ ..++...+ +.-......+
T Consensus 133 ~i~~~~~~~~~~~~i~~~~~~~~~~~~~--~~---~~~~----~~------~-~~~s~---~~~~~~~~~~~~swa~~~~ 193 (386)
T TIGR02358 133 AFVWLNNWSVWLLLIATLWLLVVVFSKA--DL---SELW----NR------A-GDMSF---AVAVELVIAMPLSWLPLIA 193 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--ch---hhhc----CC------C-CCccH---HHHHHHHHHHHHHHHHHcc
Confidence 6666665554433222211111112211 00 0000 00 0 11111 22222111 1012234467
Q ss_pred HHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCC
Q 016873 162 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 205 (381)
Q Consensus 162 ~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~ 205 (381)
...+-.|+| |+..+....+..+...+...+|...-.+.|+
T Consensus 194 DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~ 233 (386)
T TIGR02358 194 DYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ 233 (386)
T ss_pred chhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777777776 5566667777777888888888877666665
No 52
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=96.57 E-value=0.33 Score=48.51 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=95.8
Q ss_pred ChhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcC--
Q 016873 1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQI-- 78 (381)
Q Consensus 1 ~dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l-- 78 (381)
|.++|..||++|.++.++.+.+.+.|-...-.+..|+. ..+ . + ..+...+.++.++++...+.+
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a---~~~---~------~--~~~~~~~ili~g~l~~l~~ifG~ 149 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIA---IGS---G------T--GLPVWAGILIIGVLMTLVTIFGY 149 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccc---ccc---C------C--CCcHHHHHHHHHHHHHHHHHHhH
Confidence 46789999999999999999999999999999999986 111 1 1 223345666677666555543
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHH-HHHHHHHHHHhccc
Q 016873 79 PDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRS-LQALGAIAFAYSFS 157 (381)
Q Consensus 79 ~~l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~g~i~faf~~~ 157 (381)
|-++.+...+....+..+.+ .+...+... +..... +.+ .++.+.++... ..+++-. -...
T Consensus 150 r~l~~l~~~a~~~~~~lf~~---l~~~~~~~~-------~~~~~~-~~~-----~~~~~~~fl~a~slv~g~~---~sw~ 210 (442)
T COG1457 150 RALHKLERIAVPLLLLLFLY---LLALLFRSK-------GGLDAL-WVK-----GPTSPLSFLSALSLVIGSF---ASWG 210 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhcc-------ccccee-ecc-----CCCcchhHHHHHHHHHHHH---Hhhh
Confidence 34555554443333222221 111111100 111100 000 01122222111 1222221 1344
Q ss_pred hhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCC
Q 016873 158 IILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA 207 (381)
Q Consensus 158 ~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v 207 (381)
+.....-+-+|+|+| ++.-.....+.......-+..|...-.+=|+.-
T Consensus 211 ~~~aDysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~ 258 (442)
T COG1457 211 PYAADYSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD 258 (442)
T ss_pred hhhhhhhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 667788888988732 234444555566667777788888888888766
No 53
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=96.45 E-value=0.023 Score=54.54 Aligned_cols=172 Identities=13% Similarity=0.083 Sum_probs=103.8
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHH-HHHHHHHhhcCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMIT-FGIIEVLFSQIPD 80 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii-~~~v~~pl~~l~~ 80 (381)
|..++.+|||...+..+...++.+......+-..+|.++...- + + ...|.+. ..++..--.-.+.
T Consensus 66 ~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l----p-~---------TP~~~i~~~~ll~~~y~a~~G 131 (320)
T PF03845_consen 66 EISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLL----P-E---------TPIWVIILLFLLVAAYAARKG 131 (320)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C-c---------CCHHHHHHHHHHHHHHHHhcC
Confidence 6788999999888888888888888877777777777765421 1 1 1122222 2222222223467
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 016873 81 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 160 (381)
Q Consensus 81 l~~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~ 160 (381)
++.++-.+-+-....+.....+...... +.+.++.. +-...+..+.+.+.-...+.|++-...
T Consensus 132 ~e~i~R~~~~~~~~~~i~~~~i~~~~~~--------~~~~~~l~---------P~~~~g~~~i~~~~~~~~~~~~~~~~~ 194 (320)
T PF03845_consen 132 IEVIARVAEILFPIFLILLLLILLLSIP--------NIDWDNLL---------PVLESGIKPILKGSLVISFPFGGIEIL 194 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCCHHHee---------CcccCChHHHHHHHHHHHHHHHHHHHH
Confidence 7777764433222222111111111111 11112111 112333445666677778888888888
Q ss_pred HHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCCC
Q 016873 161 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAP 208 (381)
Q Consensus 161 ~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v~ 208 (381)
.-+...+++| |+..|....+..+...+|...-+..-..||.+..
T Consensus 195 l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~ 238 (320)
T PF03845_consen 195 LFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPELA 238 (320)
T ss_pred HHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888899987 5678999999999888888887777888886543
No 54
>PRK11375 allantoin permease; Provisional
Probab=96.30 E-value=0.92 Score=46.29 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=34.9
Q ss_pred hhhhhcCCCcceeehHhHH-HHHHhHHHHHHHhhhhhHHHHHhh
Q 016873 3 AVKANLGGKKVIFCGLIQY-LNLFGVAIGYTIAASVSMMAIKRS 45 (381)
Q Consensus 3 l~~~~~G~~~~~~v~~~~~-i~~~g~~i~ylI~~g~~l~~l~~~ 45 (381)
+.|..||++|..+..+... +..+|=...-..+.|+.+..+++.
T Consensus 94 ~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~ 137 (484)
T PRK11375 94 ILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGK 137 (484)
T ss_pred hHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999888888884 577777777788889988877654
No 55
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.75 E-value=0.44 Score=49.28 Aligned_cols=111 Identities=15% Similarity=0.112 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhh-hccccCCC--CCcccccccC
Q 016873 140 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM-GYAAFGDL--APNNLLTGFG 216 (381)
Q Consensus 140 ~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~-GY~~fG~~--v~~~Il~n~~ 216 (381)
+.++..++-+..|+|.|.-.+-.--+|-|||+ |+.++++..++..+..+|....+. |-+.=-++ ..++....-|
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~sp 307 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPR---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASP 307 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCCc---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccH
Confidence 56778899999999999999999999999994 999999999999999999988763 33332222 2222211111
Q ss_pred CC---CchhHH---HHHHHHHHHHHHHhhheeccchHHHHHHH
Q 016873 217 FY---NPYWLI---DIANAAIVVHLVGAYQVFCQPLFAFVEKW 253 (381)
Q Consensus 217 ~~---~~~~~~---~~~~~~~~i~~~~s~~l~~~p~~~~ie~~ 253 (381)
.. ++.+.. .+.+++.++.+..+---.+++.-+.+..+
T Consensus 308 F~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~am 350 (554)
T KOG1286|consen 308 FVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYAL 350 (554)
T ss_pred HHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 10 112222 25566666666665544455555555554
No 56
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.03 E-value=2.6 Score=42.94 Aligned_cols=66 Identities=11% Similarity=-0.015 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCCC
Q 016873 139 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA 207 (381)
Q Consensus 139 ~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v 207 (381)
+.|.+..++-.-.....|--.-..+-+|-||++ |+-+|+...+..+..++=.++-+.-...-+++.
T Consensus 250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred chHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 566777777777777778888889999999984 778999888887777666555554445556433
No 57
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=94.64 E-value=5.7 Score=40.23 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=52.7
Q ss_pred hhhhhhcCCC-cceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873 2 DAVKANLGGK-KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 80 (381)
Q Consensus 2 dl~~~~~G~~-~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~ 80 (381)
|.-++-||++ .|.+..++.++.+++..++-+...|..++.+++. +...-+++.+++....+.+.-
T Consensus 111 e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi--------------~~~~~iii~~~iv~iYt~~GG 176 (471)
T TIGR02119 111 DVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL--------------SYLTALFIFSSSVLIYTTFGG 176 (471)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhhh
Confidence 5567778854 5677788888888887777777778877777531 112224445556667777888
Q ss_pred CchhhHHHHHHHH
Q 016873 81 FDQVWWLSIVAAI 93 (381)
Q Consensus 81 l~~l~~~S~i~~~ 93 (381)
++...++..+=.+
T Consensus 177 ~~av~~td~iQ~~ 189 (471)
T TIGR02119 177 FRAVALTDAIQGI 189 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888765443
No 58
>PRK11017 codB cytosine permease; Provisional
Probab=93.61 E-value=2.5 Score=42.01 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=46.9
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 81 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l 81 (381)
-+.|..||++|..+..+...+...|=...-..+.++.++++... +...+.++++++..+.+.+. .
T Consensus 75 v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~--------------~~~~~~~i~~~l~~~~~~~G-~ 139 (404)
T PRK11017 75 LLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL--------------DINLLIVLSGLLMTVTAYFG-I 139 (404)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHHHH-H
Confidence 36789999999999999888888877777666677766654321 11224555666666655443 3
Q ss_pred chhhHHHHH
Q 016873 82 DQVWWLSIV 90 (381)
Q Consensus 82 ~~l~~~S~i 90 (381)
+.++.+.-+
T Consensus 140 ~~i~~~~~~ 148 (404)
T PRK11017 140 SALTILSRI 148 (404)
T ss_pred HHHHHHHHH
Confidence 344444433
No 59
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=93.39 E-value=4.6 Score=38.67 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=37.2
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHh
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKR 44 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~ 44 (381)
|+-+.++||+...+.+..++..++++|+.-+=-.|.++++.++
T Consensus 70 ~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~ 112 (349)
T COG3949 70 EILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG 112 (349)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC
Confidence 6778899999888889999999999999988888878887643
No 60
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=93.12 E-value=11 Score=38.29 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=48.7
Q ss_pred hhhhhhcCCC-cceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873 2 DAVKANLGGK-KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 80 (381)
Q Consensus 2 dl~~~~~G~~-~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~ 80 (381)
|.-++-||+. .+.+..+..++..++...+-+...|..++.+++. +...-+++.+++....+.+.-
T Consensus 112 e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi--------------~~~~~iii~~~iv~iYt~~GG 177 (483)
T PRK09442 112 DMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI--------------SYETGLLIFGITVALYTAFGG 177 (483)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHHhcc
Confidence 5556667754 4556666666666666666667777777776431 112234445566677778888
Q ss_pred CchhhHHHHHHHH
Q 016873 81 FDQVWWLSIVAAI 93 (381)
Q Consensus 81 l~~l~~~S~i~~~ 93 (381)
++...++-.+=.+
T Consensus 178 l~av~~TD~iQ~~ 190 (483)
T PRK09442 178 FRAVVLTDALQGI 190 (483)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887765433
No 61
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=92.84 E-value=13 Score=38.16 Aligned_cols=247 Identities=16% Similarity=0.116 Sum_probs=125.7
Q ss_pred cCchhhHHHHHHHHHhh--cCCCCchhh-HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcc-c
Q 016873 60 SSNGYMITFGIIEVLFS--QIPDFDQVW-WLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTV-T 135 (381)
Q Consensus 60 ~~~~~~ii~~~v~~pl~--~l~~l~~l~-~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 135 (381)
+...|..++.++++.+- -.|-+.+.- |+|.+=++..+.+.++.++..+ .+..+ ++.. +.++ |+++ .
T Consensus 159 ~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~-Gg~~~---~~~i-g~~y-----w~~pg~ 228 (541)
T COG0833 159 PPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIIC-GGGPT---HGYI-GFNY-----WHDPGA 228 (541)
T ss_pred ChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhc-CCCCC---CCCc-ceee-----ecCCCC
Confidence 34467777666555444 345555555 6666666555554444333322 22221 1111 1111 1111 2
Q ss_pred chhhHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhh-hhccccCCCC------C
Q 016873 136 GTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC-MGYAAFGDLA------P 208 (381)
Q Consensus 136 ~~~~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~-~GY~~fG~~v------~ 208 (381)
....+.++...+-+..|||+|..++----.|=+||+ |..+|+..-...=+.+.|...-+ .|-+.-.++- .
T Consensus 229 F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~ 305 (541)
T COG0833 229 FAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSS 305 (541)
T ss_pred CCcchHHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCc
Confidence 344466778889999999999999988889999994 88999988888777777755432 2332222220 0
Q ss_pred cccccc-----cCCCCchhHHHHHHHHHHHHHHHhhheeccchHHHHHHHHhccC-CCC-ccCcccccccCCCccccccc
Q 016873 209 NNLLTG-----FGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKW-PKS-DLVTAEYEIPIPFWGVYQLN 281 (381)
Q Consensus 209 ~~Il~n-----~~~~~~~~~~~~~~~~~~i~~~~s~~l~~~p~~~~ie~~~~~~~-~~~-~~~~~~~~~~~p~~~~~~~~ 281 (381)
+++-.+ +....-..+..+.|+.++..++.+--=.++-..+.+..+-+..+ |+- ...|++ ..|
T Consensus 306 ~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~---GvP-------- 374 (541)
T COG0833 306 SGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRR---GVP-------- 374 (541)
T ss_pred CCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCC---CCc--------
Confidence 111111 10001123345667776666655532223334445544432211 110 001111 112
Q ss_pred hhHHHHHHHHHHHHHHHHHHccc---hHHHHHHhhhhhhhhHHHHHHHHHHHHhc
Q 016873 282 LFRLVWRTLFVVLTTLISMLLPF---FNDVVGILGAMGFWPLTVYFPIEMYKAQK 333 (381)
Q Consensus 282 ~~r~~~r~~~v~~~~~iA~~iP~---f~~vl~LvGa~~~~~l~fi~P~l~~lkl~ 333 (381)
..-+++..++-+++++-+.. .. ++-++++.|-.+ .++-+.=++.|++.|
T Consensus 375 ~~al~vt~~fg~lafl~~~~-~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR 426 (541)
T COG0833 375 LVALLVTLLFGLLAFLNSSF-KETTVFNWLLNISGLSG--FIAWGSICLSHIRFR 426 (541)
T ss_pred hHHHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 23344555555555554444 43 777888877654 334444467777654
No 62
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=92.68 E-value=9.7 Score=38.96 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=55.1
Q ss_pred hhhhhhcC-CCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873 2 DAVKANLG-GKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 80 (381)
Q Consensus 2 dl~~~~~G-~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~ 80 (381)
|.-++=|| ++.|.+..++.++..++-+..-++.+|+.++..... +...-+++.+.++..-+.+--
T Consensus 109 d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi--------------~~~~~~~~~~~~v~~Yt~~gG 174 (493)
T COG0591 109 DFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGI--------------SYVTGILIGALIVALYTFLGG 174 (493)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--------------CHHHHHHHHHHHHHHHHHHcC
Confidence 56677799 889999999999999999999999999988655431 111112334455666667777
Q ss_pred CchhhHHHHHH
Q 016873 81 FDQVWWLSIVA 91 (381)
Q Consensus 81 l~~l~~~S~i~ 91 (381)
+++..|+..+=
T Consensus 175 ~~av~~Td~iq 185 (493)
T COG0591 175 LRAVVWTDFIQ 185 (493)
T ss_pred hhHHHHHHHHH
Confidence 88888877643
No 63
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=91.99 E-value=1.4 Score=43.65 Aligned_cols=79 Identities=11% Similarity=0.289 Sum_probs=45.9
Q ss_pred hhhhhhcCCCc--ceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCC
Q 016873 2 DAVKANLGGKK--VIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIP 79 (381)
Q Consensus 2 dl~~~~~G~~~--~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~ 79 (381)
|.-++-||+.. |.+..+..++..+......+...|..++.+++. +....+++.+++.+..+.+-
T Consensus 73 e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi--------------~~~~~~~i~~~i~~iYt~~G 138 (406)
T PF00474_consen 73 EYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI--------------PYNTAILIVGVIVIIYTFFG 138 (406)
T ss_dssp HHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT
T ss_pred hhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccch--------------hhhHHHHHHHHHHHHhhhhh
Confidence 56677888888 666566666667777777777788877766431 11233444556666677777
Q ss_pred CCchhhHHHHHHHHH
Q 016873 80 DFDQVWWLSIVAAIM 94 (381)
Q Consensus 80 ~l~~l~~~S~i~~~~ 94 (381)
=++...+...+=.+.
T Consensus 139 Gl~av~~td~iQ~~i 153 (406)
T PF00474_consen 139 GLRAVAWTDFIQGVI 153 (406)
T ss_dssp ------SHHHHHHHH
T ss_pred hHhhhhHHHHHHHHH
Confidence 788888777655443
No 64
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=90.04 E-value=21 Score=35.29 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=54.0
Q ss_pred hhhhhhcCC-CcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873 2 DAVKANLGG-KKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 80 (381)
Q Consensus 2 dl~~~~~G~-~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~ 80 (381)
|.-++-||+ ..|.+..+..++.++.....-+...|..++.+++- +...-+++.+++++..+.+--
T Consensus 70 e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi--------------~~~~~~ii~~~i~~~Yt~~GG 135 (407)
T TIGR00813 70 EYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL--------------DLYLSLLLLGAITILYTVFGG 135 (407)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------------hHHHHHHHHHHHHHHHHHHcc
Confidence 556677887 47777778888888888888888888888877531 112224445556666677777
Q ss_pred CchhhHHHHHHHHH
Q 016873 81 FDQVWWLSIVAAIM 94 (381)
Q Consensus 81 l~~l~~~S~i~~~~ 94 (381)
++...+.-.+=.+.
T Consensus 136 ~~av~~Td~iQ~~i 149 (407)
T TIGR00813 136 LKAVVWTDTIQAVI 149 (407)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888877665443
No 65
>PRK12488 acetate permease; Provisional
Probab=87.18 E-value=40 Score=34.97 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=51.8
Q ss_pred hhhhhcC-CCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873 3 AVKANLG-GKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 81 (381)
Q Consensus 3 l~~~~~G-~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l 81 (381)
.-++=|| |+.|.+..+..++.++....+-++..|..++.++.. +...-+++.++++..-+.+-=+
T Consensus 135 ~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi--------------~~~~~iii~~~i~~~Yt~~GGm 200 (549)
T PRK12488 135 VVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI--------------SYLYAVVIVGALMVLYVTFGGM 200 (549)
T ss_pred HHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHhccch
Confidence 3344566 568888888888887777777777788887777431 1112244455666667777888
Q ss_pred chhhHHHHHHHHH
Q 016873 82 DQVWWLSIVAAIM 94 (381)
Q Consensus 82 ~~l~~~S~i~~~~ 94 (381)
+...|+..+=.+.
T Consensus 201 ~av~~td~iQ~~i 213 (549)
T PRK12488 201 LATTWVQIIKAVL 213 (549)
T ss_pred hHHHHHHHHHHHH
Confidence 8888888765433
No 66
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=86.10 E-value=2.3 Score=41.93 Aligned_cols=73 Identities=21% Similarity=0.313 Sum_probs=53.8
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 81 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l 81 (381)
|+++..||++|+.+..+...+.|+++|++.+...+|-++++.+ ..+.+.|.++++++...++.. .+
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------------k~~y~~~v~~~~l~s~~ia~~-Gl 324 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------------KLSYKTWVIVFTLFSFIVANL-GL 324 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHHHHHh-CH
Confidence 6789999999999999999999999999999999888777632 123345666666555554432 45
Q ss_pred chhhHHH
Q 016873 82 DQVWWLS 88 (381)
Q Consensus 82 ~~l~~~S 88 (381)
+++--.|
T Consensus 325 ~~Ii~~~ 331 (378)
T TIGR00796 325 TQIISIS 331 (378)
T ss_pred HHHHHHH
Confidence 5554444
No 67
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=79.19 E-value=64 Score=31.29 Aligned_cols=73 Identities=8% Similarity=0.174 Sum_probs=47.0
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhc--CC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQ--IP 79 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~--l~ 79 (381)
|..++-+||+..++..+...+.+..+.++-++..+..++.+.+ .+...+.++.++..+.+.+ .+
T Consensus 46 ~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g--------------~~~~~~~~~~~~~~~~ll~~~~~ 111 (358)
T PF01566_consen 46 EGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG--------------IPLWIWVLLVAVIAILLLWLSSG 111 (358)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCcHHHHHHHHHHHHHHHHHHhc
Confidence 4556778888888888888888888888877777777775531 2233455555544444444 56
Q ss_pred CCchhhHHH
Q 016873 80 DFDQVWWLS 88 (381)
Q Consensus 80 ~l~~l~~~S 88 (381)
+.+.+..+.
T Consensus 112 ~y~~~E~~~ 120 (358)
T PF01566_consen 112 GYRRLERIL 120 (358)
T ss_pred cchHHHHHH
Confidence 666666444
No 68
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=75.54 E-value=1e+02 Score=31.59 Aligned_cols=79 Identities=19% Similarity=0.169 Sum_probs=43.2
Q ss_pred hhhhhhcCCCcce---eehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcC
Q 016873 2 DAVKANLGGKKVI---FCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQI 78 (381)
Q Consensus 2 dl~~~~~G~~~~~---~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l 78 (381)
|.-++=||++.|. +..+..++..+.-+.+-+...|..++.+++ ++...-+++.+++.+.-+.+
T Consensus 112 e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~ 177 (502)
T PRK15419 112 DYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAATILYTFI 177 (502)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHh
Confidence 3334556654333 344444444444444445556666666542 11122344456667777778
Q ss_pred CCCchhhHHHHHHHHH
Q 016873 79 PDFDQVWWLSIVAAIM 94 (381)
Q Consensus 79 ~~l~~l~~~S~i~~~~ 94 (381)
-=++...|+-.+=.+.
T Consensus 178 GGl~aV~~TD~iQ~~i 193 (502)
T PRK15419 178 GGFLAVSWTDTVQASL 193 (502)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8888888887665433
No 69
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=66.78 E-value=15 Score=36.77 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=38.9
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhh
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRS 45 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~ 45 (381)
-+.|..||.+|..+..+...+...|-...-.++.|+.+..+.+.
T Consensus 75 v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~ 118 (440)
T PF02133_consen 75 VLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGI 118 (440)
T ss_dssp HHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46789999999999999999999999999999999999998764
No 70
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=65.89 E-value=1.5e+02 Score=29.67 Aligned_cols=54 Identities=17% Similarity=-0.007 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHccchHHHHHHhhhhhhhhHHHHHHHHHHHHhccC
Q 016873 282 LFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKI 335 (381)
Q Consensus 282 ~~r~~~r~~~v~~~~~iA~~iP~f~~vl~LvGa~~~~~l~fi~P~l~~lkl~~~ 335 (381)
.+|...|+...+.+..+.+.+-+.+.++.+.+.+.+..+-+..+++..+-.+|+
T Consensus 325 ~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 325 RRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 567888877766655554444499999999999887777777777766665554
No 71
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=60.92 E-value=28 Score=34.91 Aligned_cols=73 Identities=22% Similarity=0.353 Sum_probs=56.1
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 81 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l 81 (381)
+++++.||+.|..+..+...+.|+-+|++.+-..+|-++++.+. .+-+.|.++++++...++-+- +
T Consensus 265 ~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k-------------isY~~~v~i~~i~S~~ian~G-l 330 (427)
T PF05525_consen 265 QIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK-------------ISYKVWVIIFTIFSFIIANLG-L 330 (427)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cChHHHHHHHHHHHHHHHHhC-H
Confidence 46889999999999999999999999999999999999987652 334567777777666666433 4
Q ss_pred chhhHHH
Q 016873 82 DQVWWLS 88 (381)
Q Consensus 82 ~~l~~~S 88 (381)
+++--.|
T Consensus 331 ~~Ii~~s 337 (427)
T PF05525_consen 331 DQIIKIS 337 (427)
T ss_pred HHHHHHH
Confidence 4443333
No 72
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=58.86 E-value=2.3e+02 Score=29.42 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=44.3
Q ss_pred hhhcC-CCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCch
Q 016873 5 KANLG-GKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 83 (381)
Q Consensus 5 ~~~~G-~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~~ 83 (381)
++=|| |..|.+..+..++.++...+.-++..|..++.++.. +...-+++.++++..-+.+-=++.
T Consensus 137 ~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi--------------~~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T TIGR02711 137 SYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL--------------NYHVAVVLVGILMVMYVLFGGMLA 202 (549)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34455 446777666666666666666677777777766431 111223445556666667777777
Q ss_pred hhHHHHHH
Q 016873 84 VWWLSIVA 91 (381)
Q Consensus 84 l~~~S~i~ 91 (381)
..|+-.+=
T Consensus 203 v~~td~iQ 210 (549)
T TIGR02711 203 TTWVQIIK 210 (549)
T ss_pred HHHHHHHH
Confidence 77777554
No 73
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=57.09 E-value=25 Score=32.02 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=49.4
Q ss_pred HHHHHHHHHHccchHHHHHHh---------hhhhhhhHHHHHHHHHHHHhccCCCcc-----hhHHHHHHHHHHHHHHHH
Q 016873 292 VVLTTLISMLLPFFNDVVGIL---------GAMGFWPLTVYFPIEMYKAQKKIGRGT-----TRWLGLQILNVSCFFITL 357 (381)
Q Consensus 292 v~~~~~iA~~iP~f~~vl~Lv---------Ga~~~~~l~fi~P~l~~lkl~~~~~~~-----~~~~~~~~l~~~g~~~~v 357 (381)
.+.++++|.+++.++-++..+ ||.++--|+++= |..+-|.+... -+.|+.|+++++|+++..
T Consensus 163 F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~l 238 (262)
T KOG4812|consen 163 FMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFL 238 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHHHH
Confidence 445577788888887777665 888888888775 54443322211 134567788889998887
Q ss_pred HHHH--HHHHHHHHhcc
Q 016873 358 VAAI--GSVAGVVLDLK 372 (381)
Q Consensus 358 ~gt~--~si~~li~~~~ 372 (381)
-|++ ..|+..-+.++
T Consensus 239 r~~i~YikVrrm~~~~s 255 (262)
T KOG4812|consen 239 RGFINYIKVRRMEEKYS 255 (262)
T ss_pred HHHHhHHHHhhHHHHHh
Confidence 7664 45555555544
No 74
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=55.20 E-value=2.2e+02 Score=28.09 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=26.5
Q ss_pred cchhhHHHHh-hhcCCccccccchhhhhhhH---HHHHHHHhhhhhhhccc
Q 016873 156 FSIILLEIQD-TIRSPPAEYKTMKKATLFSI---IVTTTFYLLCGCMGYAA 202 (381)
Q Consensus 156 ~~~~~~~i~~-~M~~P~~~~~~~~~~~~~s~---~~~~~ly~~~g~~GY~~ 202 (381)
|-..+-.+.+ ++|||+ |..++....+. .....+|...+..|-..
T Consensus 196 g~iiv~~i~~~g~~~~~---~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~ 243 (378)
T TIGR00796 196 GIIVVNAIRSRGVTKPK---KITKYTIKAGLIAAVLLAFIYLSLFYLGATS 243 (378)
T ss_pred HHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3556666777 999984 55666666655 33445555555555443
No 75
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=53.80 E-value=14 Score=24.47 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=24.5
Q ss_pred chhhhhhhHHHHHHHHhhhhhhhccccCCCC
Q 016873 177 MKKATLFSIIVTTTFYLLCGCMGYAAFGDLA 207 (381)
Q Consensus 177 ~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~v 207 (381)
|..+..+++.+..++..++|..-|.+||+.-
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 5566777788888888888888899999753
No 76
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=52.74 E-value=16 Score=36.15 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=50.0
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhh
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFS 76 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~ 76 (381)
+..+..||+.|+.+...+..+.|+-+|++.+...+|-++++.+. ++-+.|..+++++.+..+
T Consensus 267 ~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~-------------~SY~~~v~if~i~sflva 328 (431)
T COG1114 267 AYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPK-------------LSYKTWVIIFTLISFLVA 328 (431)
T ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------ccHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999998887652 334457777776665554
No 77
>CHL00020 psbN photosystem II protein N
Probab=50.54 E-value=14 Score=24.13 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=21.6
Q ss_pred hhhhhhHHHHHHHHhhhhhhhccccCCCC
Q 016873 179 KATLFSIIVTTTFYLLCGCMGYAAFGDLA 207 (381)
Q Consensus 179 ~~~~~s~~~~~~ly~~~g~~GY~~fG~~v 207 (381)
.+..+++.+..++..++|..-|.+||+.-
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 34566777777777888888899999753
No 78
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=46.83 E-value=16 Score=36.73 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=50.7
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIP 79 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~ 79 (381)
...+..+|++|+.+..+.+.+.|+-++++-+-..+|-+++..+ .+.+.|.++.+++..+++.+.
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~G 332 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNLG 332 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHhH
Confidence 4567889999999999999999999999999999997776532 234567777777777776543
No 79
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=44.40 E-value=23 Score=23.20 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=20.9
Q ss_pred hhhhhHHHHHHHHhhhhhhhccccCCCCC
Q 016873 180 ATLFSIIVTTTFYLLCGCMGYAAFGDLAP 208 (381)
Q Consensus 180 ~~~~s~~~~~~ly~~~g~~GY~~fG~~v~ 208 (381)
+..+++.+..++-.++|...|.+||+.-+
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 34566677777777888888999996443
No 80
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=38.09 E-value=4.5e+02 Score=26.69 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=40.6
Q ss_pred hhhhhhcCCCccee---ehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcC
Q 016873 2 DAVKANLGGKKVIF---CGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQI 78 (381)
Q Consensus 2 dl~~~~~G~~~~~~---v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l 78 (381)
|.-++=||+..|.+ ..+...+....-...-+...|..++.+++. +...-+++.+++...-+.+
T Consensus 108 e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi--------------~~~~~iii~~~i~~~Yt~~ 173 (487)
T TIGR02121 108 DFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL--------------DYKTGLLIGALIIVIYTFF 173 (487)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------------cHHHHHHHHHHHHHHHHHh
Confidence 34455567543332 333333333343444455566666665431 1122244455666666677
Q ss_pred CCCchhhHHHHHHHH
Q 016873 79 PDFDQVWWLSIVAAI 93 (381)
Q Consensus 79 ~~l~~l~~~S~i~~~ 93 (381)
-=++...++-.+=.+
T Consensus 174 GGl~av~~TD~iQ~~ 188 (487)
T TIGR02121 174 GGFLAVSWTDFVQGL 188 (487)
T ss_pred hhHHHHHHHHHHHHH
Confidence 778888877765433
No 81
>PRK10484 putative transporter; Provisional
Probab=36.49 E-value=4.9e+02 Score=26.70 Aligned_cols=85 Identities=8% Similarity=0.110 Sum_probs=41.2
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHH-HHHhhhhhHHHHHhhcccccCCCCCCCcccCc--hh--hHHHHHHHHHhh
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIG-YTIAASVSMMAIKRSNCFQKSGGKDPCHMSSN--GY--MITFGIIEVLFS 76 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~-ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~--~~--~ii~~~v~~pl~ 76 (381)
|.-++-||+..+.+.....++......++ .+...+..++.+...... ..++.. .+ .++.+++...-+
T Consensus 105 e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~--------~gi~~~~~~~~~~~~~~~i~~~Yt 176 (523)
T PRK10484 105 DFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSEL--------LGISYGAAIWLLVWLIGIIGAIYA 176 (523)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh--------cCCcHHHHHHHHHHHHHHHHhhhh
Confidence 55567788877766666554443333222 223334444444321000 011111 11 112234556666
Q ss_pred cCCCCchhhHHHHHHHHH
Q 016873 77 QIPDFDQVWWLSIVAAIM 94 (381)
Q Consensus 77 ~l~~l~~l~~~S~i~~~~ 94 (381)
.+-=++...++-.+=.+.
T Consensus 177 ~~GGl~aV~~TD~iQ~vi 194 (523)
T PRK10484 177 VFGGLKAVAVSDTINGIG 194 (523)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 777788888877665443
No 82
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=35.07 E-value=5.2e+02 Score=28.19 Aligned_cols=93 Identities=19% Similarity=0.191 Sum_probs=52.6
Q ss_pred hhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHH-HHHhhcc-cccC-CCCCCCcc--cCchhhHHHHHHH--HHhhc
Q 016873 5 KANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMM-AIKRSNC-FQKS-GGKDPCHM--SSNGYMITFGIIE--VLFSQ 77 (381)
Q Consensus 5 ~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~-~l~~~~~-~~~~-~~~~~~~~--~~~~~~ii~~~v~--~pl~~ 77 (381)
.+.+||-..-.++++.++...-....|++-.=|.+- .+.+... ++.+ .+++.-.+ +.|.+-.++.+++ +.+.=
T Consensus 186 SRsLGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~G 265 (1075)
T KOG2082|consen 186 SRSLGPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVG 265 (1075)
T ss_pred ecccCccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHH
Confidence 467899888889999999988888889887666543 3444211 2211 11111111 2344433332222 22223
Q ss_pred CCCCchhhHHHHHHHHHHHH
Q 016873 78 IPDFDQVWWLSIVAAIMSFT 97 (381)
Q Consensus 78 l~~l~~l~~~S~i~~~~~~~ 97 (381)
.|-.++++.+++.+++.++.
T Consensus 266 VK~Vnk~A~vfL~CVILSIl 285 (1075)
T KOG2082|consen 266 VKFVNKFAPVFLACVILSIL 285 (1075)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 45667778888777665554
No 83
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=34.69 E-value=5.4e+02 Score=26.64 Aligned_cols=76 Identities=9% Similarity=0.080 Sum_probs=48.0
Q ss_pred hhhhhhcCCC-cceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873 2 DAVKANLGGK-KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 80 (381)
Q Consensus 2 dl~~~~~G~~-~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~ 80 (381)
|.-++=||++ .|.+..+..++..+.....-+...|..++.++.. +...-+++.++++..-+.+-=
T Consensus 99 e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi--------------~~~~~iii~~~i~~iYt~~GG 164 (552)
T TIGR03648 99 DFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV--------------DFETGVFIGMAIVFFYAVLGG 164 (552)
T ss_pred HHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhhh
Confidence 3345557744 6777777777777777667777778777776531 111223445566666677777
Q ss_pred CchhhHHHHHH
Q 016873 81 FDQVWWLSIVA 91 (381)
Q Consensus 81 l~~l~~~S~i~ 91 (381)
++...|.-.+=
T Consensus 165 ~~aV~~TD~iQ 175 (552)
T TIGR03648 165 MKGVTWTQVAQ 175 (552)
T ss_pred HHHHHHHHHHH
Confidence 88887777654
No 84
>PRK00701 manganese transport protein MntH; Reviewed
Probab=29.29 E-value=6e+02 Score=25.54 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=27.9
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHH
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAI 42 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l 42 (381)
|+.|+-+||+..++..+...+.+.++.++-++-.+..++.+
T Consensus 98 ~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 98 QACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred HHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788887777666666667777777666666666554
No 85
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=29.17 E-value=3.1e+02 Score=27.27 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHcc-chHHHHHHhhhhhhhhHHHHHHHHHHHHhcc
Q 016873 283 FRLVWRTLFVVLTTLISMLLP-FFNDVVGILGAMGFWPLTVYFPIEMYKAQKK 334 (381)
Q Consensus 283 ~r~~~r~~~v~~~~~iA~~iP-~f~~vl~LvGa~~~~~l~fi~P~l~~lkl~~ 334 (381)
.|............+.++..| .+-..++..|++..+..+-++|.+++.+-++
T Consensus 323 ~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~ 375 (415)
T COG0814 323 GRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRK 375 (415)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555556666777888888 5888889999999999999999999988753
No 86
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=28.72 E-value=4.2e+02 Score=25.44 Aligned_cols=34 Identities=15% Similarity=0.460 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHH---------HccchHHHHHHhhhhhh
Q 016873 284 RLVWRTLFVVLTTLISM---------LLPFFNDVVGILGAMGF 317 (381)
Q Consensus 284 r~~~r~~~v~~~~~iA~---------~iP~f~~vl~LvGa~~~ 317 (381)
.+++++.-.++.+++|. -+|.+..++++++++--
T Consensus 80 ~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il 122 (356)
T COG4956 80 TILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIIL 122 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHH
Confidence 44555554444444332 35677777777766653
No 87
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.22 E-value=2.8e+02 Score=21.77 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016873 345 LQILNVSCFFITLVAAIG 362 (381)
Q Consensus 345 ~~~l~~~g~~~~v~gt~~ 362 (381)
...++++|++.++...|-
T Consensus 77 tl~~lllGv~~G~~n~w~ 94 (100)
T TIGR02230 77 TLTMLIVGVVIGCLNAWH 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445667788777775554
No 88
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=27.11 E-value=35 Score=24.17 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=19.0
Q ss_pred HhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhcc
Q 016873 164 QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYA 201 (381)
Q Consensus 164 ~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~ 201 (381)
.+--++| +++.|.++... +.+-..++|++||.
T Consensus 21 l~~~~KP--d~~Ef~~ia~~----~~iG~~i~G~iGf~ 52 (61)
T PRK09400 21 LKVARKP--TREEFLLVAKV----TGLGILLIGLIGFI 52 (61)
T ss_pred HHHhcCC--CHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3344677 67777776543 33344567777775
No 89
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=26.08 E-value=38 Score=24.02 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=18.8
Q ss_pred hhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccc
Q 016873 166 TIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA 202 (381)
Q Consensus 166 ~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~ 202 (381)
--++| +++.|.++... +.+-..++|+.||.-
T Consensus 19 ~~~KP--d~~Ef~~iak~----t~iG~~i~G~IGf~I 49 (61)
T TIGR00327 19 VCKKP--DLEEYLKVAKV----TGIGIIIVGIIGYII 49 (61)
T ss_pred HhcCC--CHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34677 67778776543 233345677777754
No 90
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=24.25 E-value=3.6e+02 Score=25.73 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016873 345 LQILNVSCFFITLVAAIGSVAGVVLDL 371 (381)
Q Consensus 345 ~~~l~~~g~~~~v~gt~~si~~li~~~ 371 (381)
...+.+.|++++.+|++.+++.-.+..
T Consensus 280 ~~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 280 CLLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567778888888888887776655
No 91
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=23.28 E-value=4e+02 Score=25.37 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016873 345 LQILNVSCFFITLVAAIGSVAGVVLDLK 372 (381)
Q Consensus 345 ~~~l~~~g~~~~v~gt~~si~~li~~~~ 372 (381)
...++..|++++.+|.+.+++.-.+.++
T Consensus 280 ~~~l~~~g~~lg~lgs~~s~~r~Lr~~~ 307 (309)
T TIGR00439 280 LGLLLGFCIALGVVGAWLATTQHLLCFK 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456677888888888888887776653
No 92
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=22.80 E-value=1.6e+02 Score=31.55 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=35.5
Q ss_pred HHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhh
Q 016873 145 QALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG 199 (381)
Q Consensus 145 ~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~G 199 (381)
..||++.=+-.|...=-..-.|+|+|+ |..+|....+...++++|.++.++-
T Consensus 298 ~~FgV~F~g~tGimAGAnMSgELk~PS---kSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 298 STFGVFFPGTTGIMAGANMSGELKAPS---KSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred hhheeeeccchhhhcCCCcCccccCcc---ccCCccchHHHHHHHHHHHHHHHHh
Confidence 334444433333222234457899994 7799999999999999999887743
No 93
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=20.52 E-value=3.4e+02 Score=24.09 Aligned_cols=60 Identities=13% Similarity=-0.032 Sum_probs=41.3
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhccCCC----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016873 311 ILGAMGFWPLTVYFPIEMYKAQKKIGR----------GTTRWLGLQILNVSCFFITLVAAIGSVAGVVLD 370 (381)
Q Consensus 311 LvGa~~~~~l~fi~P~l~~lkl~~~~~----------~~~~~~~~~~l~~~g~~~~v~gt~~si~~li~~ 370 (381)
..|++.+.-+-.++|+...+.++|+.- ++-+-..-.+...+|++.++.....|..++.+.
T Consensus 49 ~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~G 118 (195)
T PF05805_consen 49 YFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSEG 118 (195)
T ss_pred ecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 456677777888999999998875521 111222345566788888888888888888664
No 94
>PRK12768 CysZ-like protein; Reviewed
Probab=20.11 E-value=3.8e+02 Score=24.61 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=20.8
Q ss_pred HhhhcCCccccccchhhhhhhHHHHHHHHhhhh
Q 016873 164 QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCG 196 (381)
Q Consensus 164 ~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g 196 (381)
.+++.+| ++++++..+.+.+..++...+
T Consensus 9 ~~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 9 LARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4678887 588888888887777776653
Done!