Query 016873
Match_columns 381
No_of_seqs 110 out of 1137
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:12:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.9 4.3E-08 1.5E-12 96.6 16.7 177 3-205 76-252 (445)
2 3gia_A Uncharacterized protein 98.5 8.3E-06 2.8E-10 80.2 19.0 65 137-204 184-248 (444)
3 4djk_A Probable glutamate/gamm 98.4 1.7E-05 5.7E-10 79.4 20.7 59 145-206 205-263 (511)
4 2jln_A MHP1; hydantoin, transp 96.7 0.043 1.5E-06 54.7 16.5 84 1-94 91-174 (501)
5 3dh4_A Sodium/glucose cotransp 90.5 15 0.00051 36.5 18.8 79 2-94 87-166 (530)
6 2xq2_A Sodium/glucose cotransp 65.6 1.1E+02 0.0039 30.4 18.4 79 2-94 116-195 (593)
7 1afo_A Glycophorin A; integral 27.8 1.1E+02 0.0036 18.7 4.1 26 346-371 12-37 (40)
8 3mp7_B Preprotein translocase 26.8 28 0.00095 23.7 1.6 31 165-201 20-50 (61)
9 3l1l_A Arginine/agmatine antip 21.9 2.8E+02 0.0096 25.7 8.4 44 2-45 264-307 (445)
10 1rh5_B Preprotein translocase 18.9 37 0.0013 24.1 1.0 32 165-202 24-55 (74)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.87 E-value=4.3e-08 Score=96.62 Aligned_cols=177 Identities=11% Similarity=0.049 Sum_probs=99.5
Q ss_pred hhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCCCc
Q 016873 3 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFD 82 (381)
Q Consensus 3 l~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~l~ 82 (381)
..++.+||+...++.+...+.....+.++....++.++...+. . . + ++....+.++...++..+ -.+..+
T Consensus 76 ~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~--~--~~~~~~~~~~~~~~~~~i-n~~g~~ 145 (445)
T 3l1l_A 76 YARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI--L---K--D--PWVLTITCVVVLWIFVLL-NIVGPK 145 (445)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG--G---G--S--HHHHHHHHHHHHHHHHHH-HHHCHH
T ss_pred hHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc--c---c--c--cHHHHHHHHHHHHHHHHH-HHhchH
Confidence 4678899999899999888887777777777777655543221 0 0 0 111111111111111111 223455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccccccccccCCcccchhhHHHHHHHHHHHHHHhccchhhHH
Q 016873 83 QVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLE 162 (381)
Q Consensus 83 ~l~~~S~i~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~g~i~faf~~~~~~~~ 162 (381)
..+.+..+.....+...++.++..+... ++ +.-.++ +. .....+..++..++...+|+|.|......
T Consensus 146 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~--~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~af~G~e~~~~ 212 (445)
T 3l1l_A 146 MITRVQAVATVLALIPIVGIAVFGWFWF--RG--ETYMAA--WN-------VSGLGTFGAIQSTLNVTLWSFIGVESASV 212 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTC--CC--CCCCCC--------------------HHHHHHHHHHTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--Ch--hhcccc--cC-------ccCCccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5555543333322221111222222111 10 000011 11 11122345678889999999999999999
Q ss_pred HHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCC
Q 016873 163 IQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 205 (381)
Q Consensus 163 i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~ 205 (381)
..+|+|||+ |+.+|+...+..++.++|....+......+.
T Consensus 213 ~~~e~k~p~---r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~ 252 (445)
T 3l1l_A 213 AAGVVKNPK---RNVPIATIGGVLIAAVCYVLSTTAIMGMIPN 252 (445)
T ss_dssp GGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 999999994 8899999999999999999988776666654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.46 E-value=8.3e-06 Score=80.16 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccC
Q 016873 137 TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 204 (381)
Q Consensus 137 ~~~~~~~~~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG 204 (381)
+.++.+++.++...+|+|.|........+|+|||+ |+.+|+...+..++.++|....+......+
T Consensus 184 ~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~---r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 184 PSAVSGMIFASAIFFLSYMGFGVITNASEHIENPK---KNVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33445778889999999999999999999999994 789999999999999999988776554444
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.43 E-value=1.7e-05 Score=79.43 Aligned_cols=59 Identities=10% Similarity=0.032 Sum_probs=51.3
Q ss_pred HHHHHHHHHhccchhhHHHHhhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccccCCC
Q 016873 145 QALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL 206 (381)
Q Consensus 145 ~a~g~i~faf~~~~~~~~i~~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~fG~~ 206 (381)
.++...+|+|.|.......-+|+|||+ |+.+|++..++.++.++|....+.-....+++
T Consensus 205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 205 VVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 456778999999999999999999994 88999999999999999999887766666653
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=96.73 E-value=0.043 Score=54.70 Aligned_cols=84 Identities=14% Similarity=0.103 Sum_probs=59.3
Q ss_pred ChhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873 1 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 80 (381)
Q Consensus 1 ~dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~ 80 (381)
+++.|..||++|..+..+...+.++|-...-....|+.+..+++.. ++. . +.....++++++.++.++ .-
T Consensus 91 ~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~-~g~-------~-~~~v~~~i~~~l~~~~~~-~G 160 (501)
T 2jln_A 91 TVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLL-TGF-------T-NLPLWIVIFGAIQVVTTF-YG 160 (501)
T ss_dssp HHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCC-------C-CHHHHHHHHHHHHHHHHT-TH
T ss_pred hhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCc-------c-hHHHHHHHHHHHHHHHHH-hC
Confidence 3678999999999999999999999999988899999998886531 110 0 012345556666677764 44
Q ss_pred CchhhHHHHHHHHH
Q 016873 81 FDQVWWLSIVAAIM 94 (381)
Q Consensus 81 l~~l~~~S~i~~~~ 94 (381)
++.++.+..++...
T Consensus 161 ~~~i~~~~~~~~p~ 174 (501)
T 2jln_A 161 ITFIRWMNVFASPV 174 (501)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777766655443
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=90.47 E-value=15 Score=36.46 Aligned_cols=79 Identities=9% Similarity=0.174 Sum_probs=39.7
Q ss_pred hhhhhhcCCCcceeehHhHHH-HHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYL-NLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 80 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i-~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~ 80 (381)
|.-++-||++.|.+..+..++ +.+....+-+...|..++.++. ++...-+++.++++..-+.+--
T Consensus 87 e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GG 152 (530)
T 3dh4_A 87 EFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGG 152 (530)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------CCHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcc
Confidence 455667888877776665443 2333333334445555665532 1112224445566677777778
Q ss_pred CchhhHHHHHHHHH
Q 016873 81 FDQVWWLSIVAAIM 94 (381)
Q Consensus 81 l~~l~~~S~i~~~~ 94 (381)
++...|+-.+=.+.
T Consensus 153 l~aV~~TD~iQ~~i 166 (530)
T 3dh4_A 153 LSAVVWTDVIQVFF 166 (530)
T ss_dssp ---CCSHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 88888877655443
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=65.63 E-value=1.1e+02 Score=30.44 Aligned_cols=79 Identities=9% Similarity=0.156 Sum_probs=41.0
Q ss_pred hhhhhhcCCCcceeehHhHHH-HHHhHHHHHHHhhhhhHHHHHhhcccccCCCCCCCcccCchhhHHHHHHHHHhhcCCC
Q 016873 2 DAVKANLGGKKVIFCGLIQYL-NLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 80 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i-~~~g~~i~ylI~~g~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ii~~~v~~pl~~l~~ 80 (381)
|.-++=||++.|.+..+..++ +.+.....-+...|..++.+++. +...-+++.++++...+.+--
T Consensus 116 e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi--------------~~~~~i~i~~~i~~~Yt~~GG 181 (593)
T 2xq2_A 116 EFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGI--------------PLMYSILGLALFALVYSIYGG 181 (593)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------------cHHHHHHHHHHHHHHHHHhcc
Confidence 445566788777666555443 23332333334456666666431 111223445566677777777
Q ss_pred CchhhHHHHHHHHH
Q 016873 81 FDQVWWLSIVAAIM 94 (381)
Q Consensus 81 l~~l~~~S~i~~~~ 94 (381)
++...|+-.+=.+.
T Consensus 182 l~av~~TD~iQ~ii 195 (593)
T 2xq2_A 182 LSAVVWTDVIQVFF 195 (593)
T ss_dssp ---CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 88877777655443
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=27.81 E-value=1.1e+02 Score=18.72 Aligned_cols=26 Identities=12% Similarity=0.026 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 016873 346 QILNVSCFFITLVAAIGSVAGVVLDL 371 (381)
Q Consensus 346 ~~l~~~g~~~~v~gt~~si~~li~~~ 371 (381)
..++++|+..++.||+-.+.=.++.+
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~rl 37 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIRRL 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888887776655544
No 8
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=26.79 E-value=28 Score=23.71 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=17.9
Q ss_pred hhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhcc
Q 016873 165 DTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYA 201 (381)
Q Consensus 165 ~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~ 201 (381)
+--++| +++.|.++...+ .+-..++|++||.
T Consensus 20 k~~~KP--d~~Ef~~iak~~----~iG~~i~G~iGf~ 50 (61)
T 3mp7_B 20 LVTKKP--NWATYKRAAKIT----GLGIILIGLIGML 50 (61)
T ss_dssp HHSCCC--CTTHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344677 677787765532 3334456666664
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=21.85 E-value=2.8e+02 Score=25.72 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=38.8
Q ss_pred hhhhhhcCCCcceeehHhHHHHHHhHHHHHHHhhhhhHHHHHhh
Q 016873 2 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRS 45 (381)
Q Consensus 2 dl~~~~~G~~~~~~v~~~~~i~~~g~~i~ylI~~g~~l~~l~~~ 45 (381)
|+.+..+|+++..++.+...+..+++..+++...++.+..+.+.
T Consensus 264 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 264 DAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56788899999999999999999999999999999988887664
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=18.93 E-value=37 Score=24.07 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=18.7
Q ss_pred hhhcCCccccccchhhhhhhHHHHHHHHhhhhhhhccc
Q 016873 165 DTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA 202 (381)
Q Consensus 165 ~~M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~ 202 (381)
+--++| +++.|.++...+ .+-..++|++||.-
T Consensus 24 k~~~KP--dr~EF~~iak~~----~iG~~imG~IGfiI 55 (74)
T 1rh5_B 24 LVLKKP--TKDEYLAVAKVT----ALGISLLGIIGYII 55 (74)
T ss_dssp HSEECC--CHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHhcCC--CHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 344677 677787765432 33344567777754
Done!