Query 016873
Match_columns 381
No_of_seqs 110 out of 1137
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 05:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016873.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016873hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 23.9 10 0.00075 23.7 0.6 30 167-202 15-44 (56)
2 d1jb0l_ f.31.1.1 (L:) Photosys 5.5 5.2E+02 0.038 18.7 6.2 25 144-168 123-147 (151)
3 d1ciya3 f.1.3.1 (A:33-255) del 3.4 3.5E+02 0.025 20.9 3.2 26 290-315 7-32 (223)
4 d2e74h1 f.23.27.1 (H:3-29) Pet 3.0 3.6E+02 0.026 13.1 2.7 15 288-302 7-21 (27)
5 d1q90r_ f.23.12.1 (R:) ISP sub 2.9 4.6E+02 0.034 14.4 2.4 13 313-325 19-31 (39)
6 d1v54d_ f.23.1.1 (D:) Mitochon 2.6 4.6E+02 0.033 18.9 2.8 24 164-190 65-88 (144)
7 d1ppjc1 f.32.1.1 (C:261-379) M 2.6 4.4E+02 0.032 18.2 2.6 23 301-326 23-46 (119)
8 d1h9aa1 c.2.1.3 (A:1-181,A:413 2.5 3E+02 0.022 20.9 1.6 23 311-333 10-32 (195)
9 d1qkia1 c.2.1.3 (A:12-199,A:43 2.4 3E+02 0.022 21.1 1.6 23 311-333 25-47 (203)
10 d3cx5c1 f.32.1.1 (C:262-385) M 2.4 4.9E+02 0.036 18.0 2.7 22 301-325 23-45 (124)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=23.95 E-value=10 Score=23.75 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=17.6
Q ss_pred hcCCccccccchhhhhhhHHHHHHHHhhhhhhhccc
Q 016873 167 IRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA 202 (381)
Q Consensus 167 M~~P~~~~~~~~~~~~~s~~~~~~ly~~~g~~GY~~ 202 (381)
-++| +++.|.++..++ .+=.+++|+.||.-
T Consensus 15 ~~KP--~~~Ef~~ia~v~----~iG~~i~G~IGf~I 44 (56)
T d1rh5b_ 15 LKKP--TKDEYLAVAKVT----ALGISLLGIIGYII 44 (56)
T ss_dssp EECC--CHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hcCC--CHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3566 677787765432 33344667777754
No 2
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=5.54 E-value=5.2e+02 Score=18.73 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhccchhhHHHHhhhc
Q 016873 144 LQALGAIAFAYSFSIILLEIQDTIR 168 (381)
Q Consensus 144 ~~a~g~i~faf~~~~~~~~i~~~M~ 168 (381)
+.++|-..|||..-.+.+-++.-|+
T Consensus 123 ~Gg~GGa~fAy~Ll~n~~~~d~i~~ 147 (151)
T d1jb0l_ 123 VGAMGSAFVAFFLLENFLVVDGIMT 147 (151)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hccccHHHHHHHHHcchHHHHHHHH
Confidence 4689999999988888887777665
No 3
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=3.41 E-value=3.5e+02 Score=20.89 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHccchHHHHHHhhhh
Q 016873 290 LFVVLTTLISMLLPFFNDVVGILGAM 315 (381)
Q Consensus 290 ~~v~~~~~iA~~iP~f~~vl~LvGa~ 315 (381)
..-++..+++.++|..+.++++++-+
T Consensus 7 ~~~~~~~ll~~~iP~~g~~~~li~~l 32 (223)
T d1ciya3 7 SLSLTQFLLSEFVPGAGFVLGLVDII 32 (223)
T ss_dssp HHHHHHHHHHCCSSSHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCCchHHHHHHHHHH
Confidence 44466677788899999888876554
No 4
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.03 E-value=3.6e+02 Score=13.13 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHc
Q 016873 288 RTLFVVLTTLISMLL 302 (381)
Q Consensus 288 r~~~v~~~~~iA~~i 302 (381)
..++++.++-+|+.+
T Consensus 7 v~llvvftwsiamvv 21 (27)
T d2e74h1 7 VALLVVFTWSIAMVV 21 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHhhheeeeEE
Confidence 445666777777654
No 5
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.91 E-value=4.6e+02 Score=14.41 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=4.7
Q ss_pred hhhhhhhHHHHHH
Q 016873 313 GAMGFWPLTVYFP 325 (381)
Q Consensus 313 Ga~~~~~l~fi~P 325 (381)
|+.+.......+|
T Consensus 19 G~~~~~~~g~l~p 31 (39)
T d1q90r_ 19 GGAGLPITTLALG 31 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hccchhhhhhccc
Confidence 3333333333333
No 6
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.62 E-value=4.6e+02 Score=18.94 Aligned_cols=24 Identities=4% Similarity=-0.035 Sum_probs=13.6
Q ss_pred HhhhcCCccccccchhhhhhhHHHHHH
Q 016873 164 QDTIRSPPAEYKTMKKATLFSIIVTTT 190 (381)
Q Consensus 164 ~~~M~~P~~~~~~~~~~~~~s~~~~~~ 190 (381)
+.+|..|. ..+++++...+..+.+
T Consensus 65 ~ae~~~p~---gewK~v~g~~~~~i~~ 88 (144)
T d1v54d_ 65 FAEMNRST---NEWKTVVGAAMFFIGF 88 (144)
T ss_dssp HHHHTCCC---SHHHHHHHHHHHHHHH
T ss_pred cccccCCC---CchhHHHHHHHHHHHH
Confidence 67888773 4466665544443333
No 7
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.57 E-value=4.4e+02 Score=18.25 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=13.4
Q ss_pred Hccc-hHHHHHHhhhhhhhhHHHHHHH
Q 016873 301 LLPF-FNDVVGILGAMGFWPLTVYFPI 326 (381)
Q Consensus 301 ~iP~-f~~vl~LvGa~~~~~l~fi~P~ 326 (381)
.+|+ ++-++.+++|+. +-+.+|-
T Consensus 23 sipnK~gGvl~m~~si~---il~~lP~ 46 (119)
T d1ppjc1 23 SIPNKLGGVLALAFSIL---ILALIPL 46 (119)
T ss_dssp TCSSHHHHHHHHHHHHH---GGGTHHH
T ss_pred cCCchhHHHHHHHHHHH---HHHHHHH
Confidence 3774 777777666663 4444443
No 8
>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}
Probab=2.45 E-value=3e+02 Score=20.87 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.5
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhc
Q 016873 311 ILGAMGFWPLTVYFPIEMYKAQK 333 (381)
Q Consensus 311 LvGa~~~~~l~fi~P~l~~lkl~ 333 (381)
+.||++--+.=-++|+++++...
T Consensus 10 IFGaTGDLa~RKL~PAL~~L~~~ 32 (195)
T d1h9aa1 10 FFGGTGDLAKRKLYPSVFNLYKK 32 (195)
T ss_dssp EETTTSHHHHHTHHHHHHHHHHT
T ss_pred EECcccHHHHhHHHHHHHHHHHc
Confidence 56999999999999999999875
No 9
>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.45 E-value=3e+02 Score=21.14 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.6
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhc
Q 016873 311 ILGAMGFWPLTVYFPIEMYKAQK 333 (381)
Q Consensus 311 LvGa~~~~~l~fi~P~l~~lkl~ 333 (381)
+.||++--+-=-++|+++++...
T Consensus 25 IFGatGDLA~RKL~PALf~L~~~ 47 (203)
T d1qkia1 25 IMGASGDLAKKKIYPTIWWLFRD 47 (203)
T ss_dssp EETTTSHHHHHTHHHHHHHHHHT
T ss_pred EECcccHHHHhHHHHHHHHHHHc
Confidence 56999999999999999999874
No 10
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.42 E-value=4.9e+02 Score=18.03 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=12.4
Q ss_pred Hccc-hHHHHHHhhhhhhhhHHHHHH
Q 016873 301 LLPF-FNDVVGILGAMGFWPLTVYFP 325 (381)
Q Consensus 301 ~iP~-f~~vl~LvGa~~~~~l~fi~P 325 (381)
.+|+ .+-++.+++|+. +-+.+|
T Consensus 23 siP~k~~Gvl~~~~si~---il~~lP 45 (124)
T d3cx5c1 23 SIPDKLLGVITMFAAIL---VLLVLP 45 (124)
T ss_dssp TSSSHHHHHHHHHHHHH---GGGGHH
T ss_pred cCCcchhhhHHHHHHHH---HHHHHH
Confidence 3674 666666666653 334444
Done!