Query 016874
Match_columns 381
No_of_seqs 135 out of 225
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:35:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016874.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016874hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5157 CDC73 RNA polymerase I 100.0 1.3E-70 2.8E-75 518.9 23.4 325 2-379 3-343 (362)
2 KOG3786 RNA polymerase II asse 100.0 5.9E-69 1.3E-73 526.0 19.7 333 1-379 2-373 (395)
3 PF05179 CDC73: RNA pol II acc 100.0 1.9E-60 4.2E-65 460.0 10.5 143 232-378 114-256 (273)
4 KOG3786 RNA polymerase II asse 97.5 2.4E-05 5.2E-10 78.6 0.8 46 51-96 1-46 (395)
5 smart00481 POLIIIAc DNA polyme 35.3 25 0.00054 26.3 1.7 29 61-89 12-40 (67)
6 PF14504 CAP_assoc_N: CAP-asso 28.9 39 0.00085 29.9 2.1 30 312-341 45-75 (141)
7 PRK07313 phosphopantothenoylcy 22.1 60 0.0013 29.9 2.0 35 233-267 112-151 (182)
8 TIGR02113 coaC_strep phosphopa 19.5 93 0.002 28.5 2.7 35 233-267 111-150 (177)
9 PRK06029 3-octaprenyl-4-hydrox 18.9 92 0.002 28.9 2.5 35 233-267 114-150 (185)
10 PRK05920 aromatic acid decarbo 17.0 1.1E+02 0.0023 28.9 2.6 36 233-268 129-166 (204)
No 1
>COG5157 CDC73 RNA polymerase II assessory factor [Transcription]
Probab=100.00 E-value=1.3e-70 Score=518.88 Aligned_cols=325 Identities=26% Similarity=0.370 Sum_probs=250.5
Q ss_pred ChhHHHHHHHhcCCC-----------CcceecCcEEEecC----CccccCCCcceeeecCCceeeHHHHHHHHHhCCCCh
Q 016874 2 DPLSALRDFTIRSEL-----------DKVTQTGDEILFGS----DYTFPSSIETAYRSKQGNLYTLQTVVYFIKHYNLKH 66 (381)
Q Consensus 2 DpL~~LR~~~~~~~~-----------~~i~~~~~~i~Fg~----~~~~~k~~~T~f~~~~~~~ytL~si~f~~~~~d~~~ 66 (381)
..|.+||.++.+++. .+++....++.|.+ .++|+.+..|.... +..+.|++|||||+|+|.++
T Consensus 3 n~ldllk~~l~~~d~~~l~~~E~~s~~~kv~~~q~~~f~~~~S~~~~fe~ne~~eiE~--DS~~qLR~v~f~wlnrD~s~ 80 (362)
T COG5157 3 NSLDLLKKALRDPDACQLSPEEIVSGGKKVPPKQMVKFKGTESKEYTFEQNEETEIEI--DSLVQLRIVLFYWLNRDKSY 80 (362)
T ss_pred cHHHHHHHHhcCccceecchhhccccCcccCceeEEEecCCCCceeecCcccceeecc--cchhhhhhhhhhhhhccchH
Confidence 568899999998851 11223457888853 24788888887764 68999999999999999999
Q ss_pred HHHHHHHHhCCCCceecCchhhHHHhhcCCCCCccccccccccccccCCCCccccCCCCCCcchhhHHHHHhccccCCch
Q 016874 67 TDYIQRARSNKLPAVTLPDRKPLYEYLTGVTDSADQIETVIANDHVLNDGKIVETDGGGDDLELDDISLIRACERPLKDR 146 (381)
Q Consensus 67 ~~Yv~~a~~~~i~~Vs~~DRkdLl~yL~G~~dts~~I~~~ap~~~~~~~~~~~~~~~~~d~~~~d~~~~I~~~Er~l~dr 146 (381)
++||++|++.||++|+|+||+|||+||+|.+|++.+|....|...+..+.+ ..+..+.+...+.+-+.+.+||.+.+|
T Consensus 81 a~Y~~~C~e~gi~ni~fl~rtdlI~wlegnteSsq~l~~~~~k~EtSs~ts--~s~~~D~~~sd~~V~~~~k~eR~l~~h 158 (362)
T COG5157 81 AVYMTLCRESGIGNIYFLDRTDLIEWLEGNTESSQYLKAPGQKKETSSTTS--ISARIDSEVSDPVVVETMKHERILVGH 158 (362)
T ss_pred HHHHHHHHHcCcccEEEeeHHHHHHHHhCCcchhhhhcCCCCCCCCccccc--ceeecccccccHHHhhhhhcceeecCC
Confidence 999999999999999999999999999999999999975222211111111 111122222235889999999999999
Q ss_pred hhhhh-hcCcchHHHHhhhhHHHHHHHHHHhhhhcccccccccccCccccCcccCCCCCCCCCCCCCCcccCCCChhhhh
Q 016874 147 EALLE-CKGIDFYSVLVSSTRREEERQRIESQQRKDGLVAKNRLMGVDERGIGYGGGGGGGGGGAGDEAYEANPKPKLLQ 225 (381)
Q Consensus 147 nsvLr-~k~~dF~~vl~~~~~~e~~~~~~~~~~~k~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 225 (381)
|++|+ .||.+|.+++.++.. ++ ++++.+. .|+.+.+| .|.
T Consensus 159 ns~l~G~kpi~f~~l~kd~ed-----~l---~qs~~~s------------------~~Hk~ah~--------Rp~----- 199 (362)
T COG5157 159 NSRLIGLKPISFLGLLKDKED-----KL---VQSEGGS------------------LGHKGAHG--------RPT----- 199 (362)
T ss_pred CceeecccccchhhhhhhHHH-----Hh---hhhcccc------------------cccccccc--------Ccc-----
Confidence 99999 599999999966632 22 1222110 01111111 111
Q ss_pred cccCCCCCCCcEEEecCCcccccchhhHHHHHhcCcccCChhhhhccCCCCCceEEEEeeecCCCCceeeEEEEEcCCCC
Q 016874 226 LKSGKIGEGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQVVKAYEVRDKPST 305 (381)
Q Consensus 226 ~~~~k~~~~~PIIivPs~~tslit~~NiK~FLe~g~fv~~~~~~~~~~~~~~~~v~i~r~~~~~~~~~~~~f~vvD~~~~ 305 (381)
|-..++||||||++++|++||+|||+|||+|+||+|.+......+ --.+.+.+...+ ...+++|++||++.+
T Consensus 200 ----k~~~kDPIIlvp~saSS~lt~~NIK~FleEgkyV~P~n~~~~~~G--~~i~~~eK~~~~--~~g~~rfIiVd~t~~ 271 (362)
T COG5157 200 ----KYYAKDPIILVPQSASSPLTLSNIKEFLEEGKYVNPRNLPSCSDG--IRISEVEKVELD--LDGPFRFIIVDDTGG 271 (362)
T ss_pred ----ccccCCceEEeccccccceeHHHHHHHHHhcCccCccccccCCCC--ceEEeeeehhhc--ccCceEEEEEcCCCC
Confidence 112579999999999999999999999999999998664322111 124455554432 356899999999999
Q ss_pred CCCCCCCeEEEEEEcCCccccccCCCCCHHHHhccccEEEEEeccCCCCchhcccccceEEEEeCCCCccCccc
Q 016874 306 MKSEDWDRVVAVFVLGKEWQFKEWPFKDHVEIFNKIIGFYMRFEDDSVESAKIVKQWNVKIISVSKLFPFSCLC 379 (381)
Q Consensus 306 ~~~~dW~rVVAVf~~G~~WQFk~w~~~~p~~lF~~v~gf~~~~~~~~~p~~~~v~~WnV~~l~i~r~kRh~d~~ 379 (381)
|+||||||||||||||++|||.+|+|++|.+||++|+||||+|.||++|+ .+++|||+.+.+++.|||.|--
T Consensus 272 FkpeyWdRVVciFttG~~WQf~~y~w~~p~elF~~~kgfyf~~~Gd~~~~--~~~~wNve~i~v~~~kR~~dre 343 (362)
T COG5157 272 FKPEYWDRVVCIFTTGSKWQFGRYNWRDPGELFNTIKGFYFARRGDQSNL--YMRNWNVEEIGVHDGKRFVDRE 343 (362)
T ss_pred cChhhhceEEEEEecCCeeeecCcccCCHHHHHhhCCceEEEEcCCCCCh--hhhccCceeEEeecCcccccHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999854
No 2
>KOG3786 consensus RNA polymerase II assessory factor Cdc73p [Transcription]
Probab=100.00 E-value=5.9e-69 Score=526.01 Aligned_cols=333 Identities=35% Similarity=0.512 Sum_probs=254.6
Q ss_pred CChhHHHHHHHhcCCCCcceec--------------CcEEEecC---CccccCCCcceeeecCCceeeHHHHHHHHHhCC
Q 016874 1 MDPLSALRDFTIRSELDKVTQT--------------GDEILFGS---DYTFPSSIETAYRSKQGNLYTLQTVVYFIKHYN 63 (381)
Q Consensus 1 ~DpL~~LR~~~~~~~~~~i~~~--------------~~~i~Fg~---~~~~~k~~~T~f~~~~~~~ytL~si~f~~~~~d 63 (381)
||.|.+|+.++..+ ..+.+. ..++.|.. ...+|+...|...+ +.-.+|+.++++|..++
T Consensus 2 l~sll~l~kn~~~~--h~v~l~~~~~~s~~~v~~~drk~lL~~~ng~~~~~~~~e~~~~~~--d~~~~~~i~~l~~amsd 77 (395)
T KOG3786|consen 2 LDSLLLLLKNVALK--HDVYLRASAEESIPVVTRPDRKELLFYLNGPIAKKPRTEETELEN--DSVFDLRIKSLSEAMSD 77 (395)
T ss_pred hhHHHHHHHHHhhc--CCeeeecccccCCCccccccHHHHHhhcCChhhccCCccceeeee--cccccHHHHHHHHHhcc
Confidence 68999999999999 554432 24555521 22455555555543 44899999999999999
Q ss_pred CChHHHHHHHHhCCCCceecCchhhHHHhhcCCCCCccccccccccccccCCCCccccCCCCCCcchhhHHHHHhccccC
Q 016874 64 LKHTDYIQRARSNKLPAVTLPDRKPLYEYLTGVTDSADQIETVIANDHVLNDGKIVETDGGGDDLELDDISLIRACERPL 143 (381)
Q Consensus 64 ~~~~~Yv~~a~~~~i~~Vs~~DRkdLl~yL~G~~dts~~I~~~ap~~~~~~~~~~~~~~~~~d~~~~d~~~~I~~~Er~l 143 (381)
.++++|.++|.+.+..+++|++|.|++.||.|-+++. .|.++.|+++||++
T Consensus 78 ~~ia~ykak~~~~~~~~~k~~~~~d~i~~~~g~~~~d-----------------------------~d~~~~i~k~Er~~ 128 (395)
T KOG3786|consen 78 ESIAEYKAKCLAKKRTNIKFLVRTDLIVWLKGNTESD-----------------------------VDLIRDILKRERPW 128 (395)
T ss_pred HHHHHHhHHHHHhcccchhcccchHHHHHhhCCcccc-----------------------------HHHHhhhhccCCcc
Confidence 9999999999999999999999999999999932211 15778899999999
Q ss_pred CchhhhhhhcCcchH----HHHhhhhHHHHHHHHHHhhhh----------ccc--ccccccccCccccCcccCCCCCCCC
Q 016874 144 KDREALLECKGIDFY----SVLVSSTRREEERQRIESQQR----------KDG--LVAKNRLMGVDERGIGYGGGGGGGG 207 (381)
Q Consensus 144 ~drnsvLr~k~~dF~----~vl~~~~~~e~~~~~~~~~~~----------k~~--~~~~~r~~~~~~~~~~~~~~~~~~~ 207 (381)
++|.++|++.+++|. +++...+.+++.++..+.++. ..+ +..|+||.+... .++.++++|.
T Consensus 129 rt~~~il~~~~~~~~k~~~s~l~~~~~~~e~~~~v~~~~~~~~~v~~~~~~~~p~~~~y~ryi~~rf--~~~~~~~~Gs- 205 (395)
T KOG3786|consen 129 RTRTTILQSTGREFVKNIFSKLQEVKAREEDRKTVEEHNPNFMPVDPAIRIDGPKPIDYNRYIQERF--LSFGIDTYGS- 205 (395)
T ss_pred chHHHHHhhcchhhhhhHHHHhhccceeeecCcccccccccccCCCHHHhcCCccchhhhhhhhhhh--hccccccccc-
Confidence 999999998888882 344455555555544433321 112 235788864322 2333454444
Q ss_pred CCCCCCcccCCCChhhh----hccc--CCCCCCCcEEEecCCcccccchhhHHHHHhcCcccCChhhhhccCCCCCceEE
Q 016874 208 GGAGDEAYEANPKPKLL----QLKS--GKIGEGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVT 281 (381)
Q Consensus 208 ~~~~~~~~~~~p~~~~~----~~~~--~k~~~~~PIIivPs~~tslit~~NiK~FLe~g~fv~~~~~~~~~~~~~~~~v~ 281 (381)
+|. .. +|.++.. ..+. .....++||||||+|+||||||+|||+|||||+|+|...++.+++ .++++|.
T Consensus 206 ~g~-~l----~~~~e~~~~~~~~~~~~~~~prr~PIIlvPsA~sSlITm~NiK~fLeEgkyvp~~~k~~~g~-~~~~~v~ 279 (395)
T KOG3786|consen 206 HGM-KL----KPVHEGARKRRKKQPGASGGPRRDPIILVPSAASSLITMLNIKEFLEEGKYVPEAAKKNQGC-RRPEEVL 279 (395)
T ss_pred ccc-cC----CccchhhhhccccCCCCCCCCccCcEEEechhhcchhhHHhHHHHHHhcccCccchhhcCCC-CCCceee
Confidence 222 11 1111110 0000 012257999999999999999999999999999999555554444 3899999
Q ss_pred EEeeecCCCCceeeEEEEEcCCCCCCCCCCCeEEEEEEcCCccccccCCCCCHHHHhccccEEEEEeccCCCCchhcccc
Q 016874 282 VQKKFSRDRDQVVKAYEVRDKPSTMKSEDWDRVVAVFVLGKEWQFKEWPFKDHVEIFNKIIGFYMRFEDDSVESAKIVKQ 361 (381)
Q Consensus 282 i~r~~~~~~~~~~~~f~vvD~~~~~~~~dW~rVVAVf~~G~~WQFk~w~~~~p~~lF~~v~gf~~~~~~~~~p~~~~v~~ 361 (381)
|+|++++. ..+++|+|||||.+|+|+||||||||||+|++||||+|||+||++||++||||||+|.|+++++ +|++
T Consensus 280 ve~kf~~~--~~~v~y~VVDn~~~ltPedWDRVVaVF~~G~~WQFk~wpw~dp~eIF~ki~gF~l~f~gd~~~~--~v~~ 355 (395)
T KOG3786|consen 280 VEKKFDNF--KVTVRYRVVDNPTKLTPEDWDRVVAVFVTGPKWQFKGWPWRDPVEIFNKIKGFHLHFRGDPLDP--NVQQ 355 (395)
T ss_pred eeeccccc--ccceEEEEecCCCcCChhhhceEEEEEeecCccccCCCCCCCHHHHHhhcceeEEEecCCCCCc--chhh
Confidence 99999753 3689999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred cceEEEEeCCCCccCccc
Q 016874 362 WNVKIISVSKLFPFSCLC 379 (381)
Q Consensus 362 WnV~~l~i~r~kRh~d~~ 379 (381)
|||+.|.|+++|||.|--
T Consensus 356 wnV~~lels~~kRh~Dr~ 373 (395)
T KOG3786|consen 356 WNVEALELSKNKRHVDRE 373 (395)
T ss_pred hceeEEEeecccccccHH
Confidence 999999999999999953
No 3
>PF05179 CDC73: RNA pol II accessory factor, Cdc73 family; InterPro: IPR007852 Paf1 is an RNA polymerase II-associated protein in yeast, which defines a complex that is distinct from the Srb/Mediator holoenzyme. The Paf1 complex, which also contains Cdc73, Ctr9, Hpr1, Ccr4, Rtf1 and Leo1, is required for full expression of a subset of yeast genes, particularly those responsive to signals from the Pkc1/MAP kinase cascade. The complex appears to play an essential role in RNA elongation []. ; PDB: 3V46_A.
Probab=100.00 E-value=1.9e-60 Score=459.99 Aligned_cols=143 Identities=46% Similarity=0.849 Sum_probs=100.7
Q ss_pred CCCCcEEEecCCcccccchhhHHHHHhcCcccCChhhhhccCCCCCceEEEEeeecCCCCceeeEEEEEcCCCCCCCCCC
Q 016874 232 GEGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQVVKAYEVRDKPSTMKSEDW 311 (381)
Q Consensus 232 ~~~~PIIivPs~~tslit~~NiK~FLe~g~fv~~~~~~~~~~~~~~~~v~i~r~~~~~~~~~~~~f~vvD~~~~~~~~dW 311 (381)
.+++||||||+|+||||||+|||+|||||+||++++.+..++ .++++|+|+|++.++. ..+++|+|||||.+|+||||
T Consensus 114 ~~~~PIIiVp~s~sSlitm~NiK~FLed~~fv~~~~~~~~~~-~~~~~v~i~r~~~~~~-~~~v~f~VvD~~~~~~pedW 191 (273)
T PF05179_consen 114 RSKDPIIIVPPSASSLITMYNIKQFLEDGKFVPPDEKRKSGS-SKPNEVTIQRKFDRIK-PGPVRFRVVDNPEKFTPEDW 191 (273)
T ss_dssp --S--EEE----TT-SS-TTTHHHHHHH--------GGGS----TTSEEEEEE--TTSS-S--EEEEEESSSTT--GGGG
T ss_pred CCCCCEEEECCcccchhHHHHHHHHHHcCeeecCccccccCC-CCCCEEEEEeccCCCC-CCceeEEEecChhhCCcccC
Confidence 367999999999999999999999999999999888877654 4889999999996532 24899999999999999999
Q ss_pred CeEEEEEEcCCccccccCCCCCHHHHhccccEEEEEeccCCCCchhcccccceEEEEeCCCCccCcc
Q 016874 312 DRVVAVFVLGKEWQFKEWPFKDHVEIFNKIIGFYMRFEDDSVESAKIVKQWNVKIISVSKLFPFSCL 378 (381)
Q Consensus 312 ~rVVAVf~~G~~WQFk~w~~~~p~~lF~~v~gf~~~~~~~~~p~~~~v~~WnV~~l~i~r~kRh~d~ 378 (381)
+|||||||+||+||||+|||++|++||++||||||+|+||++|+ +|++|||++|.|+|+|||+|.
T Consensus 192 ~RVVAVF~~G~~WQFk~w~~~~P~~LF~~v~gf~~~~~~~~~p~--~v~~WnV~~l~l~r~kRh~D~ 256 (273)
T PF05179_consen 192 DRVVAVFVTGQAWQFKGWPWSDPVELFQKVKGFYVHYDGDKVPP--NVKQWNVKVLRLSRNKRHLDR 256 (273)
T ss_dssp GGEEEEE--S-GGGGTTSSS-SHHHHHHHSEEEEEEETTS---H--HHHHSSEEEEEE-SS--TTHH
T ss_pred CeEEEEEeECchhhhCCCCCCCHHHHhhcCcEEEEEecCCCCCh--hHhcCCCeEEEeCCCcccchH
Confidence 99999999999999999999999999999999999999999999 999999999999999999996
No 4
>KOG3786 consensus RNA polymerase II assessory factor Cdc73p [Transcription]
Probab=97.54 E-value=2.4e-05 Score=78.57 Aligned_cols=46 Identities=39% Similarity=0.688 Sum_probs=44.8
Q ss_pred eHHHHHHHHHhCCCChHHHHHHHHhCCCCceecCchhhHHHhhcCC
Q 016874 51 TLQTVVYFIKHYNLKHTDYIQRARSNKLPAVTLPDRKPLYEYLTGV 96 (381)
Q Consensus 51 tL~si~f~~~~~d~~~~~Yv~~a~~~~i~~Vs~~DRkdLl~yL~G~ 96 (381)
||+||+|+.+|..++|..||++|.++.++.|+.+||++||.||+|.
T Consensus 1 tl~sll~l~kn~~~~h~v~l~~~~~~s~~~v~~~drk~lL~~~ng~ 46 (395)
T KOG3786|consen 1 TLDSLLLLLKNVALKHDVYLRASAEESIPVVTRPDRKELLFYLNGP 46 (395)
T ss_pred ChhHHHHHHHHHhhcCCeeeecccccCCCccccccHHHHHhhcCCh
Confidence 6899999999999999999999999999999999999999999993
No 5
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=35.26 E-value=25 Score=26.30 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=24.9
Q ss_pred hCCCChHHHHHHHHhCCCCceecCchhhH
Q 016874 61 HYNLKHTDYIQRARSNKLPAVTLPDRKPL 89 (381)
Q Consensus 61 ~~d~~~~~Yv~~a~~~~i~~Vs~~DRkdL 89 (381)
+...+..+|++.|++.|+..|.+.|...+
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTDh~~~ 40 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITDHGNL 40 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEeeCCcc
Confidence 44567889999999999999999999754
No 6
>PF14504 CAP_assoc_N: CAP-associated N-terminal
Probab=28.88 E-value=39 Score=29.92 Aligned_cols=30 Identities=23% Similarity=0.488 Sum_probs=25.3
Q ss_pred CeEEEEEEcCCccccccCCCCCH-HHHhccc
Q 016874 312 DRVVAVFVLGKEWQFKEWPFKDH-VEIFNKI 341 (381)
Q Consensus 312 ~rVVAVf~~G~~WQFk~w~~~~p-~~lF~~v 341 (381)
++||++++.|..|...+++...+ .++|++.
T Consensus 45 ~kV~~lyt~~~~~~~~p~kiG~s~~~v~~~~ 75 (141)
T PF14504_consen 45 GKVVALYTNGNDINVSPFKIGMSKSEVFKKL 75 (141)
T ss_pred CEEEEEEECCcccccCCeecCCCHHHHHHhc
Confidence 99999999999999999988765 4577654
No 7
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=22.10 E-value=60 Score=29.85 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=27.7
Q ss_pred CCCcEEEecCC----cccccchhhHHHHHhcCcccC-Chh
Q 016874 233 EGVPIILVPSA----SQTLITIYNVKEFLEDGVYIP-TDV 267 (381)
Q Consensus 233 ~~~PIIivPs~----~tslit~~NiK~FLe~g~fv~-~~~ 267 (381)
.+.|+||+|+. ..+.++.-|+...=+.|..+= |..
T Consensus 112 ~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~ 151 (182)
T PRK07313 112 ATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKE 151 (182)
T ss_pred CCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCC
Confidence 47999999984 347899999999999887554 544
No 8
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=19.48 E-value=93 Score=28.51 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=27.9
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHHhcCcccC-Chh
Q 016874 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGVYIP-TDV 267 (381)
Q Consensus 233 ~~~PIIivPs~~t----slit~~NiK~FLe~g~fv~-~~~ 267 (381)
.+.|++|+|+..+ +.++.-|++.+=+.|.++= |..
T Consensus 111 ~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi~P~~ 150 (177)
T TIGR02113 111 PETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEIQPKE 150 (177)
T ss_pred CCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEECCCc
Confidence 3689999998764 6789999999999887654 544
No 9
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=18.89 E-value=92 Score=28.90 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=28.0
Q ss_pred CCCcEEEecCCc-ccccchhhHHHHHhcCc-ccCChh
Q 016874 233 EGVPIILVPSAS-QTLITIYNVKEFLEDGV-YIPTDV 267 (381)
Q Consensus 233 ~~~PIIivPs~~-tslit~~NiK~FLe~g~-fv~~~~ 267 (381)
.+.|+||+|..+ .+.++..|+...-+.|. ++||..
T Consensus 114 ~~~pvii~P~~M~~~p~~~~Nl~~L~~~G~~vi~P~~ 150 (185)
T PRK06029 114 ERRRLVLCVRETPLHLGHLRNMTKLAEMGAIIMPPVP 150 (185)
T ss_pred cCCCEEEEeccccCCHHHHHHHHHHHHCcCEEECCCc
Confidence 469999999765 36899999999999887 555655
No 10
>PRK05920 aromatic acid decarboxylase; Validated
Probab=16.96 E-value=1.1e+02 Score=28.92 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=28.6
Q ss_pred CCCcEEEecCC-cccccchhhHHHHHhcCc-ccCChhh
Q 016874 233 EGVPIILVPSA-SQTLITIYNVKEFLEDGV-YIPTDVK 268 (381)
Q Consensus 233 ~~~PIIivPs~-~tslit~~NiK~FLe~g~-fv~~~~~ 268 (381)
.+.|++|+|+. ..+.++.-|+....+.|. +++|...
T Consensus 129 ~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii~P~~g 166 (204)
T PRK05920 129 ERRKLILVPRETPLSLIHLENMLKLAEAGAIILPAIPA 166 (204)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEeCCccc
Confidence 46899999984 347889999999999887 5666553
Done!