Query 016874
Match_columns 381
No_of_seqs 135 out of 225
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 05:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016874.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016874hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v46_A Cell division control p 100.0 2.6E-56 9E-61 401.6 12.5 138 233-378 12-150 (170)
2 3ctr_A Poly(A)-specific ribonu 32.9 13 0.00043 30.4 0.8 24 329-352 17-40 (101)
3 1qzu_A Hypothetical protein MD 25.8 31 0.0011 31.1 2.3 35 233-267 131-170 (206)
4 4h0a_A Uncharacterized protein 25.4 38 0.0013 32.6 2.9 30 312-341 88-118 (323)
5 1g63_A Epidermin modifying enz 23.5 35 0.0012 30.1 2.1 35 233-267 106-145 (181)
6 1whv_A Poly(A)-specific ribonu 23.4 11 0.00036 30.7 -1.2 22 331-352 29-50 (100)
7 4ifa_A Extracellular protein c 22.5 84 0.0029 30.5 4.8 30 312-341 99-129 (339)
8 1p3y_1 MRSD protein; flavoprot 22.5 34 0.0011 30.6 1.8 35 233-267 114-153 (194)
9 2ejb_A Probable aromatic acid 20.6 53 0.0018 29.1 2.7 34 234-267 118-153 (189)
10 3qjg_A Epidermin biosynthesis 20.5 33 0.0011 30.2 1.3 36 233-268 109-149 (175)
11 1sbz_A Probable aromatic acid 20.3 51 0.0018 29.5 2.5 35 233-267 113-149 (197)
No 1
>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding, protein interaction surface, transcription elongation factor; 1.55A {Saccharomyces cerevisiae} PDB: 4dm4_A
Probab=100.00 E-value=2.6e-56 Score=401.58 Aligned_cols=138 Identities=33% Similarity=0.630 Sum_probs=129.6
Q ss_pred CCCcEEEecCCcccccchhhHHHHHhcCcccCChhhhhccCCCCCceEEEEeeecCCCCceeeEEEEEcCCCCC-CCCCC
Q 016874 233 EGVPIILVPSASQTLITIYNVKEFLEDGVYIPTDVKVKNMNGMRPECVTVQKKFSRDRDQVVKAYEVRDKPSTM-KSEDW 311 (381)
Q Consensus 233 ~~~PIIivPs~~tslit~~NiK~FLe~g~fv~~~~~~~~~~~~~~~~v~i~r~~~~~~~~~~~~f~vvD~~~~~-~~~dW 311 (381)
.++||||||+++||||||+|||+|||||+|||+++..+ ..+++|+|+|++.+ .+.+++|+||||+.+| +||||
T Consensus 12 ~~~PIIiVp~s~sSlitm~NiK~FLedg~fv~~~~~~~----~~~~~v~I~r~~~~--~~~~~~f~VVD~~~~~tkpe~W 85 (170)
T 3v46_A 12 RKDPIILIPSAASSILTVANIKQFLLESKYVNPRNLPS----VPNGLVNIEKNFER--ISRPIRFIIVDNTRMFTKPEYW 85 (170)
T ss_dssp CSCCEEECCCCTTCSSCTTTHHHHHHHCCCCCGGGSCC----CTTSEEEEEECCTT--SSSCEEEEEESSSTTCCSGGGG
T ss_pred CCCCEEEECCCccchhhHHHHHHHHhcCeecChhhccc----CCCCeEEEEEecCC--CCcceEEEEEEChHHcCCccCC
Confidence 57999999999999999999999999999999998653 25679999999864 3579999999999999 69999
Q ss_pred CeEEEEEEcCCccccccCCCCCHHHHhccccEEEEEeccCCCCchhcccccceEEEEeCCCCccCcc
Q 016874 312 DRVVAVFVLGKEWQFKEWPFKDHVEIFNKIIGFYMRFEDDSVESAKIVKQWNVKIISVSKLFPFSCL 378 (381)
Q Consensus 312 ~rVVAVf~~G~~WQFk~w~~~~p~~lF~~v~gf~~~~~~~~~p~~~~v~~WnV~~l~i~r~kRh~d~ 378 (381)
+|||||||+|++||||+|||++|++||++||||||+|+||++|+ +|++|||++|.|+|+|||+|.
T Consensus 86 ~RVVAVFv~G~~WQFk~w~~~~P~elF~~v~Gf~~~~~~~~~p~--~v~~WnV~~l~l~r~kRh~D~ 150 (170)
T 3v46_A 86 DRVVAIFTTGHTWQFNNYQWNSPQELFQRCKGYYFHFAGDSVPQ--HVQQWNVEKVELDKNKRFKDV 150 (170)
T ss_dssp GGEEEEECCSCGGGGTTSSSCSHHHHHHHSEEEEEEETTSCCCH--HHHHSSEEEEEECSSCCTTHH
T ss_pred ceEEEEEeECchhhcCCCCCCChHHHhccceEEEEEecCCCCCh--hHhhCCCEEEEeCcCccccHH
Confidence 99999999999999999999999999999999999999999999 999999999999999999996
No 2
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=32.89 E-value=13 Score=30.38 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=20.4
Q ss_pred CCCCCHHHHhccccEEEEEeccCC
Q 016874 329 WPFKDHVEIFNKIIGFYMRFEDDS 352 (381)
Q Consensus 329 w~~~~p~~lF~~v~gf~~~~~~~~ 352 (381)
|+=.|...||+.+.||++.|-+|.
T Consensus 17 wKt~Di~~lFs~fggv~I~WidDT 40 (101)
T 3ctr_A 17 WKTSDLYQLFSAFGNIQISWIDDT 40 (101)
T ss_dssp CCHHHHHHHTTTSEEEEEEEEETT
T ss_pred hhhHHHHHHHhccCCEEEEEEcCC
Confidence 334589999999999999998875
No 3
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=25.82 E-value=31 Score=31.05 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=26.5
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHHhcCccc-CChh
Q 016874 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGVYI-PTDV 267 (381)
Q Consensus 233 ~~~PIIivPs~~t----slit~~NiK~FLe~g~fv-~~~~ 267 (381)
.+.||||+|+..+ +.++.-|++..-+.|.++ ||..
T Consensus 131 ~~~pvvlaPaMn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~ 170 (206)
T 1qzu_A 131 RSKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVA 170 (206)
T ss_dssp TTSCCCEEECCCHHHHTSSTHHHHHHHHHTTCCCCCC---
T ss_pred CCCCEEEEecCCccccCCHHHHHHHHHHHHCCCEEECCcc
Confidence 4699999997653 678999999999988754 4554
No 4
>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}
Probab=25.36 E-value=38 Score=32.57 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=25.9
Q ss_pred CeEEEEEEcCCccccccCCCCCH-HHHhccc
Q 016874 312 DRVVAVFVLGKEWQFKEWPFKDH-VEIFNKI 341 (381)
Q Consensus 312 ~rVVAVf~~G~~WQFk~w~~~~p-~~lF~~v 341 (381)
++||+||++|..|..+++....+ .++|++.
T Consensus 88 ~kVv~iy~~g~~~~~~p~~iG~s~~~v~~~~ 118 (323)
T 4h0a_A 88 EEIVSVYATGEKVNVSPLKIGQHSAEIFNHT 118 (323)
T ss_dssp TEEEEEEEESSSCCCTTCCTTSBGGGTTTSC
T ss_pred CEEEEEEECCCccccCCcccCCCHHHHHHhc
Confidence 89999999999999999888754 5787775
No 5
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=23.50 E-value=35 Score=30.11 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=28.0
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHHhcCccc-CChh
Q 016874 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGVYI-PTDV 267 (381)
Q Consensus 233 ~~~PIIivPs~~t----slit~~NiK~FLe~g~fv-~~~~ 267 (381)
.+.|+||+|+..+ +.++.-|+...-+.|.++ ||..
T Consensus 106 ~~~pvvlaPamn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~ 145 (181)
T 1g63_A 106 GYQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDM 145 (181)
T ss_dssp TGGGEEEEECCCHHHHTCHHHHHHHHHHHTTTCEECCCEE
T ss_pred cCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCCEEECCCC
Confidence 4689999998864 678899999999988754 4544
No 6
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=23.41 E-value=11 Score=30.73 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.6
Q ss_pred CCCHHHHhccccEEEEEeccCC
Q 016874 331 FKDHVEIFNKIIGFYMRFEDDS 352 (381)
Q Consensus 331 ~~~p~~lF~~v~gf~~~~~~~~ 352 (381)
=.|...||+.+.||++.|-+|.
T Consensus 29 t~DI~~lFs~fggv~I~WidDT 50 (100)
T 1whv_A 29 TSDLYQLFSAFGNIQISWIDDT 50 (100)
T ss_dssp HHHHHHHHTTTCSCCCEEEETT
T ss_pred hHHHHHHhhccCCEEEEEEcCC
Confidence 4589999999999999998875
No 7
>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}
Probab=22.51 E-value=84 Score=30.47 Aligned_cols=30 Identities=17% Similarity=0.455 Sum_probs=26.0
Q ss_pred CeEEEEEEcCCccccccCCCCCH-HHHhccc
Q 016874 312 DRVVAVFVLGKEWQFKEWPFKDH-VEIFNKI 341 (381)
Q Consensus 312 ~rVVAVf~~G~~WQFk~w~~~~p-~~lF~~v 341 (381)
++||+|+++|+.+..++++...+ .+||+..
T Consensus 99 ~kVv~~y~~g~~~~~~p~kiG~s~~~v~~~~ 129 (339)
T 4ifa_A 99 RKVVTAYVAGEQVKVPPYYINEKYEDVYKKN 129 (339)
T ss_dssp TEEEEEEECCTTSCBTTBCTTCBHHHHHHHS
T ss_pred CEEEEEEECCCccccCCcccCCCHHHHHHhc
Confidence 99999999999999998888765 5688765
No 8
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=22.48 E-value=34 Score=30.57 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=27.7
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHHhcCcc-cCChh
Q 016874 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGVY-IPTDV 267 (381)
Q Consensus 233 ~~~PIIivPs~~t----slit~~NiK~FLe~g~f-v~~~~ 267 (381)
.+.|+||+|+..+ +.++.-|+...-+.|.+ +||..
T Consensus 114 ~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~~iv~p~~ 153 (194)
T 1p3y_1 114 HPHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVE 153 (194)
T ss_dssp SSSCCEEEECCCHHHHTCHHHHHHHHHHHHHTCEECCCBC
T ss_pred cCCCEEEEECCChhhcCCHHHHHHHHHHHHCCCEEECCCC
Confidence 4689999998553 68899999999998874 44544
No 9
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=20.64 E-value=53 Score=29.10 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=27.4
Q ss_pred CCcEEEecCCc-ccccchhhHHHHHhcCccc-CChh
Q 016874 234 GVPIILVPSAS-QTLITIYNVKEFLEDGVYI-PTDV 267 (381)
Q Consensus 234 ~~PIIivPs~~-tslit~~NiK~FLe~g~fv-~~~~ 267 (381)
+.|+||+|+.+ .+.+++-|+...-+.|.++ ||..
T Consensus 118 ~~plvl~Pa~m~~~~~~~~N~~~L~~~G~~ivpp~~ 153 (189)
T 2ejb_A 118 RVPLVLLVREAPYNEIHLENMLKITRMGGVVVPASP 153 (189)
T ss_dssp TCCEEEEECCSSCCHHHHHHHHHHHHTTCEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCeEEeCCCh
Confidence 68999999954 4789999999999988754 4544
No 10
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=20.51 E-value=33 Score=30.17 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=27.8
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHHhcCc-ccCChhh
Q 016874 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGV-YIPTDVK 268 (381)
Q Consensus 233 ~~~PIIivPs~~t----slit~~NiK~FLe~g~-fv~~~~~ 268 (381)
.+.|+||+|+..+ +.+++-|++..-+.|. ++||...
T Consensus 109 ~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~G~~iv~P~~g 149 (175)
T 3qjg_A 109 AFEKLSIFPNMNLRMWENPVTQNNIRLLKDYGVSIYPANIS 149 (175)
T ss_dssp CGGGEEEEECEEHHHHTCHHHHHHHHHHHHTTCEECCCCEE
T ss_pred cCCCEEEEecCChhhhcCHHHHHHHHHHHHCCCEEECCCCC
Confidence 3699999997543 6789999999999886 4556543
No 11
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=20.34 E-value=51 Score=29.51 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=27.5
Q ss_pred CCCcEEEecCCc-ccccchhhHHHHHhcCccc-CChh
Q 016874 233 EGVPIILVPSAS-QTLITIYNVKEFLEDGVYI-PTDV 267 (381)
Q Consensus 233 ~~~PIIivPs~~-tslit~~NiK~FLe~g~fv-~~~~ 267 (381)
.+.|+||+|+.+ .+.+++-|+...-+.|.++ ||..
T Consensus 113 ~~~plvl~Pa~m~~~~~~~~N~~~L~~~G~~ivpp~~ 149 (197)
T 1sbz_A 113 EGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMP 149 (197)
T ss_dssp HTCEEEEEECCSSBCHHHHHHHHHHHTTTCEECCCCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCC
Confidence 368999999965 3679999999999988654 4544
Done!