Query 016874
Match_columns 381
No_of_seqs 135 out of 225
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 05:13:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016874.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016874hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p3y1_ c.34.1.1 (1:) MrsD {Ba 32.8 8.1 0.00059 32.3 1.8 35 233-267 112-151 (183)
2 d1nd9a_ a.6.1.6 (A:) N-termina 28.4 25 0.0018 23.2 3.3 33 62-94 12-49 (49)
3 d1mvla_ c.34.1.1 (A:) 4'-phosp 25.2 15 0.0011 30.5 2.1 35 234-268 114-153 (182)
4 d1g5qa_ c.34.1.1 (A:) Epidermi 21.6 18 0.0013 29.8 1.9 34 234-267 107-145 (174)
5 d1a62a1 a.140.3.1 (A:1-47) Rho 20.1 33 0.0024 22.3 2.6 30 62-91 7-36 (47)
6 d1qzua_ c.34.1.1 (A:) 4'-phosp 18.7 24 0.0018 29.1 2.1 34 234-267 117-155 (181)
7 d1se0a_ g.52.1.1 (A:) BIR doma 13.1 9.4 0.00068 28.7 -1.9 53 326-380 13-70 (97)
8 d1k91a_ b.104.1.1 (A:) Calreti 12.9 49 0.0036 20.5 1.9 14 299-312 5-18 (37)
9 d1m65a_ c.6.3.1 (A:) Hypotheti 10.3 50 0.0037 25.9 1.7 27 64-90 17-43 (244)
10 d1cota_ a.3.1.1 (A:) Cytochrom 9.6 2E+02 0.014 20.9 5.0 47 47-97 67-118 (121)
No 1
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}
Probab=32.83 E-value=8.1 Score=32.28 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=28.2
Q ss_pred CCCcEEEecCCcc----cccchhhHHHHHhcCc-ccCChh
Q 016874 233 EGVPIILVPSASQ----TLITIYNVKEFLEDGV-YIPTDV 267 (381)
Q Consensus 233 ~~~PIIivPs~~t----slit~~NiK~FLe~g~-fv~~~~ 267 (381)
.+.||||+|+.-+ +.++.-|++.+-++|. +++|.+
T Consensus 112 ~~~pvviaPaMn~~M~~np~~~~ni~~L~~~G~~vi~P~~ 151 (183)
T d1p3y1_ 112 HPHNTIFFPNMNDLMWNKTVVSRNIEQLRKDGHIVIEPVE 151 (183)
T ss_dssp SSSCCEEEECCCHHHHTCHHHHHHHHHHHHHTCEECCCBC
T ss_pred ccCceEEEEccchHHHhhhhhHHHHHHHHHCCCEEeCCCC
Confidence 3589999998865 5688999999999995 666764
No 2
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=28.35 E-value=25 Score=23.20 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=26.5
Q ss_pred CCCChHHHHHHHHhCCCC-----ceecCchhhHHHhhc
Q 016874 62 YNLKHTDYIQRARSNKLP-----AVTLPDRKPLYEYLT 94 (381)
Q Consensus 62 ~d~~~~~Yv~~a~~~~i~-----~Vs~~DRkdLl~yL~ 94 (381)
...+.-.-+.+..++||+ .|+-.|++.|++||+
T Consensus 12 v~~~vd~Ll~Ql~~AGl~ks~~D~vt~~eK~~LL~~Ln 49 (49)
T d1nd9a_ 12 RQTSVERLVQQFADAGIRKSADDSVSAQEKQTLIDHLN 49 (49)
T ss_dssp HSSSHHHHHHHHHHHTSCCSSSSCEETTGGGHHHHHHC
T ss_pred HCcCHHHHHHHHHHcCCCCCCCCccCHHHHHHHHHhhC
Confidence 345566678888888876 788899999999996
No 3
>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.16 E-value=15 Score=30.54 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=28.0
Q ss_pred CCcEEEecCCcc----cccchhhHHHHHhcCc-ccCChhh
Q 016874 234 GVPIILVPSASQ----TLITIYNVKEFLEDGV-YIPTDVK 268 (381)
Q Consensus 234 ~~PIIivPs~~t----slit~~NiK~FLe~g~-fv~~~~~ 268 (381)
+.||||+|+.-+ ..++.-|++.+-++|. +++|...
T Consensus 114 ~kPv~iaPaMn~~Mw~~p~t~~Nl~~L~~~G~~vi~P~~G 153 (182)
T d1mvla_ 114 TKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKK 153 (182)
T ss_dssp TSCEEEEECCCHHHHHSHHHHHHHHHHHHHTCEECCCBC-
T ss_pred CCCEEEEecccHHHHhhHHHHHHHHHHhccCCEEECCCcc
Confidence 479999999875 5678999999999987 5667654
No 4
>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]}
Probab=21.64 E-value=18 Score=29.78 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=28.1
Q ss_pred CCcEEEecCCcc----cccchhhHHHHHhcCc-ccCChh
Q 016874 234 GVPIILVPSASQ----TLITIYNVKEFLEDGV-YIPTDV 267 (381)
Q Consensus 234 ~~PIIivPs~~t----slit~~NiK~FLe~g~-fv~~~~ 267 (381)
+.||||+|+.-+ ..++.-|++.+-++|. +++|+.
T Consensus 107 ~~piiiaPaMn~~Mw~~p~~~~nl~~L~~~G~~vi~P~~ 145 (174)
T d1g5qa_ 107 YQKLFIFPNMNIRMWGNPFLQKNIDLLKNNDVKVYSPDM 145 (174)
T ss_dssp GGGEEEEECSCHHHHTCHHHHHHHHHHHTTTCEECCCEE
T ss_pred cccEEEEecccHHHHhhhhHHHHHHHHHHCCCEEECCCC
Confidence 479999999865 6789999999999987 555655
No 5
>d1a62a1 a.140.3.1 (A:1-47) Rho termination factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.06 E-value=33 Score=22.28 Aligned_cols=30 Identities=10% Similarity=0.054 Sum_probs=27.0
Q ss_pred CCCChHHHHHHHHhCCCCceecCchhhHHH
Q 016874 62 YNLKHTDYIQRARSNKLPAVTLPDRKPLYE 91 (381)
Q Consensus 62 ~d~~~~~Yv~~a~~~~i~~Vs~~DRkdLl~ 91 (381)
+..+.++-+.-|.+.||.+++.+-|.||+-
T Consensus 7 k~k~~~EL~~iA~~lgIen~~~lrKQeLif 36 (47)
T d1a62a1 7 KNTPVSELITLGENMGLENLARMRKQDIIF 36 (47)
T ss_dssp HTSCHHHHHHHHHTTTCCCCTTSCHHHHHH
T ss_pred hcCCHHHHHHHHHHcCCCCcccccHHHHHH
Confidence 457889999999999999999999999974
No 6
>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.68 E-value=24 Score=29.13 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=26.2
Q ss_pred CCcEEEecCCcc----cccchhhHHHHHhcCccc-CChh
Q 016874 234 GVPIILVPSASQ----TLITIYNVKEFLEDGVYI-PTDV 267 (381)
Q Consensus 234 ~~PIIivPs~~t----slit~~NiK~FLe~g~fv-~~~~ 267 (381)
+.||+|+|+..+ ..+|--|++.+-+.|..+ +|..
T Consensus 117 ~kPv~iaPaMn~~Mw~np~tq~nl~~Lk~~G~~vi~P~~ 155 (181)
T d1qzua_ 117 SKPLLFCPAMNTAMWEHPITAQQVDQLKAFGYVEIPCVA 155 (181)
T ss_dssp TSCCCEEECCCHHHHTSSTHHHHHHHHHTTCCCCCC---
T ss_pred CCCEEEEECccHHHHhhHHHHHHHHHHHHCCcEEeCCCC
Confidence 479999999976 589999999998988754 4554
No 7
>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=13.12 E-value=9.4 Score=28.67 Aligned_cols=53 Identities=23% Similarity=0.504 Sum_probs=30.6
Q ss_pred cccCCCC--CHHHHhccccEEEEEeccCCCC--ch-hcccccceEEEEeCCCCccCcccC
Q 016874 326 FKEWPFK--DHVEIFNKIIGFYMRFEDDSVE--SA-KIVKQWNVKIISVSKLFPFSCLCL 380 (381)
Q Consensus 326 Fk~w~~~--~p~~lF~~v~gf~~~~~~~~~p--~~-~~v~~WnV~~l~i~r~kRh~d~~~ 380 (381)
|++||.. +|.+|=. .|||..-.+|.+- -| ..|.+|...--.+..++||.-.|.
T Consensus 13 F~~Wp~~~~~~~~LA~--aGFyytg~~D~v~C~~C~~~l~~W~~~D~p~~eH~r~~p~C~ 70 (97)
T d1se0a_ 13 FTDWPLDWLDKRQLAQ--TGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCP 70 (97)
T ss_dssp CTTCCCTTSCHHHHHH--TTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCT
T ss_pred HhhCCcCcCCHHHHHh--cCCEECCCCCEEEeCcCCCCcCCCCCCCCHHHHHHHHCcCCc
Confidence 6677764 5666533 4888654444441 01 136677765555666777776664
No 8
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.86 E-value=49 Score=20.50 Aligned_cols=14 Identities=43% Similarity=0.798 Sum_probs=11.6
Q ss_pred EEcCCCCCCCCCCC
Q 016874 299 VRDKPSTMKSEDWD 312 (381)
Q Consensus 299 vvD~~~~~~~~dW~ 312 (381)
.|.+++..+|+||+
T Consensus 5 ~IpDp~A~kP~dWd 18 (37)
T d1k91a_ 5 HIPDPDAKKPEDWD 18 (37)
T ss_dssp EEECSSCCSCTTCC
T ss_pred ccCCCCCCCCCccc
Confidence 46678888999998
No 9
>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}
Probab=10.29 E-value=50 Score=25.93 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=22.8
Q ss_pred CChHHHHHHHHhCCCCceecCchhhHH
Q 016874 64 LKHTDYIQRARSNKLPAVTLPDRKPLY 90 (381)
Q Consensus 64 ~~~~~Yv~~a~~~~i~~Vs~~DRkdLl 90 (381)
.+..++++.|++.|+..|.++|--.+.
T Consensus 17 ~~~~e~v~~A~~~Gl~~iaiTDH~~~~ 43 (244)
T d1m65a_ 17 STLSDYIAQAKQKGIKLFAITDHGPDM 43 (244)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEEECTTS
T ss_pred CCHHHHHHHHHHCCCCEEEEcCCCCcc
Confidence 356789999999999999999986543
No 10
>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]}
Probab=9.57 E-value=2e+02 Score=20.86 Aligned_cols=47 Identities=6% Similarity=0.137 Sum_probs=29.3
Q ss_pred CceeeHHHHHHHHHhCCCChHHHHHHHHhCCC-----CceecCchhhHHHhhcCCC
Q 016874 47 GNLYTLQTVVYFIKHYNLKHTDYIQRARSNKL-----PAVTLPDRKPLYEYLTGVT 97 (381)
Q Consensus 47 ~~~ytL~si~f~~~~~d~~~~~Yv~~a~~~~i-----~~Vs~~DRkdLl~yL~G~~ 97 (381)
|..++-+.|.-++.+ -..||+.-..... +..+--||.|||+||.--+
T Consensus 67 g~~w~~~~L~~~l~~----P~~~i~~~~~~~~~~t~M~~~~~~d~~dliAYLks~~ 118 (121)
T d1cota_ 67 DLTWTEADLIEYVTD----PKPWLVKMTDDKGAKTKMTFKMGKNQADVVAFLAQNS 118 (121)
T ss_dssp TCBCCHHHHHHHHHC----HHHHHHHHHTCTTCCCSCCCCCCSCHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHC----cHHHhccccCCCCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 445666666555544 2456665554433 2446679999999997543
Done!