Query 016876
Match_columns 381
No_of_seqs 172 out of 1318
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:36:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016876.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016876hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 1.7E-66 3.6E-71 527.5 39.7 364 5-381 167-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 6E-63 1.3E-67 498.8 36.4 332 19-381 215-554 (596)
3 PLN02792 oxidoreductase 100.0 6.8E-63 1.5E-67 496.2 36.1 332 14-381 184-523 (536)
4 PLN02991 oxidoreductase 100.0 1.3E-62 2.9E-67 493.5 36.4 332 14-381 195-530 (543)
5 KOG1263 Multicopper oxidases [ 100.0 5.3E-61 1.2E-65 479.7 37.0 343 20-381 208-555 (563)
6 PLN02354 copper ion binding / 100.0 4.4E-61 9.5E-66 485.2 36.5 321 20-381 206-538 (552)
7 PLN02835 oxidoreductase 100.0 5.4E-61 1.2E-65 483.9 36.4 320 19-381 200-531 (539)
8 PLN02604 oxidoreductase 100.0 4.2E-60 9.1E-65 482.0 38.2 331 19-381 222-561 (566)
9 PLN02191 L-ascorbate oxidase 100.0 4.2E-60 9.1E-65 481.2 36.9 330 20-381 225-561 (574)
10 TIGR03388 ascorbase L-ascorbat 100.0 4.5E-60 9.8E-65 480.3 37.1 331 20-381 202-538 (541)
11 PLN02168 copper ion binding / 100.0 3.2E-60 6.8E-65 477.1 35.5 326 13-381 192-541 (545)
12 TIGR03390 ascorbOXfungal L-asc 100.0 5.7E-56 1.2E-60 449.2 33.0 307 20-364 197-534 (538)
13 TIGR01480 copper_res_A copper- 100.0 1E-43 2.3E-48 360.0 29.6 250 19-362 258-587 (587)
14 PRK10965 multicopper oxidase; 100.0 1.7E-41 3.6E-46 341.3 27.6 269 11-361 212-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 2.7E-41 5.8E-46 336.8 25.7 247 11-363 209-469 (471)
16 COG2132 SufI Putative multicop 100.0 4.8E-34 1E-38 285.4 26.2 263 7-362 185-449 (451)
17 PF07731 Cu-oxidase_2: Multico 100.0 2.1E-29 4.6E-34 212.2 11.7 106 254-363 31-136 (138)
18 PF00394 Cu-oxidase: Multicopp 99.9 1.9E-25 4.2E-30 192.5 12.0 102 19-120 58-159 (159)
19 TIGR02376 Cu_nitrite_red nitri 99.6 2.6E-15 5.6E-20 142.7 8.9 96 21-121 202-299 (311)
20 TIGR02376 Cu_nitrite_red nitri 99.5 2.3E-12 5E-17 122.5 24.6 91 260-363 205-297 (311)
21 PLN02604 oxidoreductase 99.1 7.2E-10 1.6E-14 113.8 14.2 91 258-365 56-146 (566)
22 PF07732 Cu-oxidase_3: Multico 98.9 2.2E-09 4.8E-14 87.4 7.3 90 257-364 26-116 (117)
23 TIGR03388 ascorbase L-ascorbat 98.7 7.5E-08 1.6E-12 98.7 10.3 90 257-365 32-123 (541)
24 TIGR03389 laccase laccase, pla 98.6 4.9E-06 1.1E-10 85.4 20.3 77 257-347 187-264 (539)
25 PRK10883 FtsI repressor; Provi 98.5 1.2E-05 2.7E-10 80.9 20.9 74 258-345 221-295 (471)
26 PLN02835 oxidoreductase 98.5 1.4E-05 3E-10 81.8 20.2 74 258-345 203-277 (539)
27 PF00394 Cu-oxidase: Multicopp 98.5 1E-06 2.2E-11 75.8 9.9 94 256-363 59-157 (159)
28 TIGR03095 rusti_cyanin rusticy 98.4 1.3E-06 2.9E-11 73.9 8.9 90 257-362 52-148 (148)
29 PLN02354 copper ion binding / 98.4 3.7E-05 8.1E-10 78.8 20.0 76 257-346 207-283 (552)
30 PLN02191 L-ascorbate oxidase 98.3 2E-06 4.4E-11 88.5 10.0 91 257-364 54-144 (574)
31 TIGR01480 copper_res_A copper- 98.2 1.9E-05 4.1E-10 81.3 13.8 88 257-364 76-163 (587)
32 TIGR03390 ascorbOXfungal L-asc 98.1 0.00026 5.6E-09 72.7 19.7 68 257-338 198-266 (538)
33 PF07731 Cu-oxidase_2: Multico 98.0 8.4E-05 1.8E-09 62.1 11.3 79 19-99 32-121 (138)
34 PLN02168 copper ion binding / 98.0 2.9E-05 6.3E-10 79.3 10.0 90 257-365 57-147 (545)
35 TIGR02656 cyanin_plasto plasto 98.0 3.6E-05 7.8E-10 60.7 8.0 82 258-362 18-99 (99)
36 PRK10965 multicopper oxidase; 97.9 5.8E-05 1.3E-09 77.0 10.7 91 6-99 413-509 (523)
37 PLN02792 oxidoreductase 97.9 3.6E-05 7.7E-10 78.6 8.8 90 257-365 47-137 (536)
38 PLN00044 multi-copper oxidase- 97.9 5E-05 1.1E-09 78.2 8.9 90 257-365 60-150 (596)
39 PF00127 Copper-bind: Copper b 97.7 0.00033 7.1E-09 55.1 9.4 83 257-362 17-99 (99)
40 PLN02991 oxidoreductase 97.7 0.00017 3.7E-09 73.7 9.7 90 257-365 59-149 (543)
41 KOG1263 Multicopper oxidases [ 97.6 0.00023 5E-09 72.6 9.6 91 257-366 59-150 (563)
42 TIGR03096 nitroso_cyanin nitro 97.4 0.00075 1.6E-08 55.6 8.2 59 258-347 62-120 (135)
43 PRK02888 nitrous-oxide reducta 97.3 0.0013 2.7E-08 67.4 9.5 78 258-363 556-634 (635)
44 PF13473 Cupredoxin_1: Cupredo 97.1 0.003 6.6E-08 50.0 7.8 68 258-360 36-103 (104)
45 PRK02710 plastocyanin; Provisi 97.0 0.0028 6.1E-08 51.6 7.3 72 258-362 48-119 (119)
46 COG4454 Uncharacterized copper 96.7 0.0048 1E-07 51.7 6.4 94 258-362 64-157 (158)
47 COG2132 SufI Putative multicop 96.5 0.014 3.1E-07 58.7 9.6 77 20-99 356-435 (451)
48 TIGR02375 pseudoazurin pseudoa 95.9 0.039 8.4E-07 44.6 7.5 40 325-368 54-93 (116)
49 TIGR02657 amicyanin amicyanin. 95.4 0.11 2.5E-06 39.2 7.9 72 258-362 12-83 (83)
50 TIGR03096 nitroso_cyanin nitro 95.4 0.076 1.6E-06 43.9 7.3 62 19-98 59-120 (135)
51 TIGR03102 halo_cynanin halocya 95.1 0.15 3.3E-06 41.1 8.2 73 258-362 43-115 (115)
52 PF13473 Cupredoxin_1: Cupredo 95.1 0.12 2.7E-06 40.7 7.8 61 19-97 33-93 (104)
53 PF06525 SoxE: Sulfocyanin (So 95.0 0.39 8.5E-06 42.2 11.1 99 257-365 86-189 (196)
54 PF07732 Cu-oxidase_3: Multico 94.6 0.043 9.4E-07 44.5 3.9 77 19-100 24-101 (117)
55 PF00116 COX2: Cytochrome C ox 94.1 0.69 1.5E-05 37.6 10.0 74 256-361 45-119 (120)
56 TIGR02866 CoxB cytochrome c ox 93.2 0.52 1.1E-05 42.0 8.4 75 257-365 117-194 (201)
57 TIGR03095 rusti_cyanin rusticy 92.9 0.37 8E-06 40.8 6.7 83 14-97 44-132 (148)
58 PF06525 SoxE: Sulfocyanin (So 92.8 0.38 8.2E-06 42.3 6.7 83 14-97 78-170 (196)
59 COG3794 PetE Plastocyanin [Ene 92.6 0.69 1.5E-05 38.0 7.5 73 258-362 55-127 (128)
60 TIGR03094 sulfo_cyanin sulfocy 92.3 1.8 3.9E-05 37.5 9.9 99 256-365 84-188 (195)
61 TIGR02656 cyanin_plasto plasto 87.0 1.8 4E-05 33.7 5.6 65 19-97 15-85 (99)
62 COG4454 Uncharacterized copper 86.0 1.5 3.4E-05 36.9 4.9 75 19-97 61-141 (158)
63 PF14344 DUF4397: Domain of un 84.9 18 0.00038 29.0 10.8 55 32-86 3-82 (122)
64 COG1622 CyoA Heme/copper-type 83.6 5.3 0.00012 36.8 7.8 79 256-366 136-215 (247)
65 PF11142 DUF2917: Protein of u 81.3 5.5 0.00012 28.3 5.5 47 22-80 1-47 (63)
66 PF12690 BsuPI: Intracellular 78.8 23 0.00049 26.6 8.5 65 31-96 4-82 (82)
67 MTH00140 COX2 cytochrome c oxi 76.9 13 0.00027 33.9 7.9 77 256-364 139-216 (228)
68 PF00116 COX2: Cytochrome C ox 75.3 34 0.00074 27.6 9.3 62 19-99 44-105 (120)
69 PF07691 PA14: PA14 domain; I 75.1 30 0.00066 28.2 9.3 65 22-91 53-124 (145)
70 smart00758 PA14 domain in bact 74.7 25 0.00055 28.6 8.6 63 23-90 52-115 (136)
71 PF04151 PPC: Bacterial pre-pe 74.1 15 0.00033 26.2 6.3 66 20-97 4-69 (70)
72 PF00127 Copper-bind: Copper b 73.4 6.8 0.00015 30.4 4.6 65 19-98 15-86 (99)
73 MTH00047 COX2 cytochrome c oxi 73.3 34 0.00074 30.3 9.4 76 257-364 116-192 (194)
74 PRK02888 nitrous-oxide reducta 73.2 11 0.00025 39.2 7.2 72 26-99 536-618 (635)
75 PF07705 CARDB: CARDB; InterP 68.9 47 0.001 25.0 8.9 67 24-99 14-84 (101)
76 TIGR02695 azurin azurin. Azuri 68.6 38 0.00082 27.7 7.8 79 19-97 14-111 (125)
77 PTZ00047 cytochrome c oxidase 68.5 27 0.00059 29.8 7.3 76 256-363 72-148 (162)
78 PRK02710 plastocyanin; Provisi 68.1 19 0.00042 28.9 6.3 61 19-97 45-105 (119)
79 TIGR02695 azurin azurin. Azuri 66.5 38 0.00082 27.7 7.4 97 256-360 15-124 (125)
80 TIGR02657 amicyanin amicyanin. 60.9 27 0.00057 26.1 5.4 63 19-97 9-71 (83)
81 TIGR01433 CyoA cytochrome o ub 56.7 40 0.00088 30.6 6.8 76 257-364 139-215 (226)
82 MTH00023 COX2 cytochrome c oxi 54.5 70 0.0015 29.3 8.0 77 256-364 150-227 (240)
83 PF01835 A2M_N: MG2 domain; I 52.0 79 0.0017 24.0 7.0 69 25-98 11-85 (99)
84 TIGR01432 QOXA cytochrome aa3 51.8 52 0.0011 29.6 6.7 76 257-364 130-206 (217)
85 MTH00008 COX2 cytochrome c oxi 51.2 99 0.0021 28.1 8.4 76 256-363 139-215 (228)
86 MTH00038 COX2 cytochrome c oxi 50.2 76 0.0017 28.8 7.5 74 256-361 139-213 (229)
87 PF11614 FixG_C: IG-like fold 49.8 58 0.0013 25.9 6.1 48 29-85 33-82 (118)
88 PF14016 DUF4232: Protein of u 48.2 1.4E+02 0.003 24.2 8.3 56 30-87 21-82 (131)
89 COG3354 FlaG Putative archaeal 47.6 1.3E+02 0.0029 25.1 7.7 64 29-97 70-141 (154)
90 PRK10378 inactive ferrous ion 47.5 86 0.0019 30.8 7.8 38 322-364 81-118 (375)
91 TIGR03094 sulfo_cyanin sulfocy 46.8 84 0.0018 27.5 6.7 78 19-98 83-170 (195)
92 TIGR02375 pseudoazurin pseudoa 46.3 44 0.00096 26.9 4.8 61 19-97 13-73 (116)
93 PF08329 ChitinaseA_N: Chitina 46.1 43 0.00093 27.7 4.7 45 20-68 74-120 (133)
94 COG1470 Predicted membrane pro 44.4 1.3E+02 0.0028 30.4 8.4 73 19-98 387-467 (513)
95 MTH00051 COX2 cytochrome c oxi 44.2 1E+02 0.0022 28.1 7.4 76 256-363 143-219 (234)
96 MTH00185 COX2 cytochrome c oxi 44.0 1.7E+02 0.0036 26.7 8.7 75 256-362 139-214 (230)
97 MTH00139 COX2 cytochrome c oxi 43.7 86 0.0019 28.4 6.8 76 256-363 139-215 (226)
98 TIGR02866 CoxB cytochrome c ox 42.5 1E+02 0.0023 27.2 7.1 29 70-99 148-176 (201)
99 MTH00129 COX2 cytochrome c oxi 42.0 1.1E+02 0.0024 27.9 7.2 77 256-364 139-216 (230)
100 MTH00154 COX2 cytochrome c oxi 41.8 1.1E+02 0.0023 27.9 7.1 76 256-363 139-215 (227)
101 MTH00080 COX2 cytochrome c oxi 40.7 1.2E+02 0.0026 27.7 7.2 77 256-364 142-219 (231)
102 MTH00098 COX2 cytochrome c oxi 40.2 1.8E+02 0.0039 26.4 8.3 76 256-363 139-215 (227)
103 PF14874 PapD-like: Flagellar- 40.1 1.6E+02 0.0036 22.3 8.7 60 24-94 15-82 (102)
104 MTH00117 COX2 cytochrome c oxi 39.0 1.4E+02 0.0031 27.0 7.5 75 256-362 139-214 (227)
105 PF10633 NPCBM_assoc: NPCBM-as 37.8 1.6E+02 0.0034 21.4 7.3 65 25-98 1-75 (78)
106 MTH00076 COX2 cytochrome c oxi 37.7 1.7E+02 0.0037 26.5 7.8 76 256-363 139-215 (228)
107 PRK10525 cytochrome o ubiquino 37.1 96 0.0021 29.7 6.2 74 257-362 151-225 (315)
108 TIGR03102 halo_cynanin halocya 36.9 1.6E+02 0.0034 23.7 6.6 62 19-97 40-101 (115)
109 PF15415 DUF4622: Protein of u 36.6 65 0.0014 29.3 4.7 58 3-64 78-137 (310)
110 TIGR02745 ccoG_rdxA_fixG cytoc 34.0 1.3E+02 0.0027 30.3 6.8 49 29-86 348-398 (434)
111 PF06775 Seipin: Putative adip 33.9 41 0.0009 29.7 3.1 30 70-99 50-86 (199)
112 PRK05461 apaG CO2+/MG2+ efflux 33.5 1.3E+02 0.0027 24.7 5.6 49 30-81 32-84 (127)
113 PRK09918 putative fimbrial cha 32.8 1.7E+02 0.0036 26.6 7.0 62 19-85 74-135 (230)
114 MTH00168 COX2 cytochrome c oxi 32.3 1.6E+02 0.0034 26.7 6.6 76 256-363 139-215 (225)
115 PF10989 DUF2808: Protein of u 32.2 56 0.0012 27.4 3.5 25 323-347 99-127 (146)
116 PF04379 DUF525: Protein of un 31.2 1.1E+02 0.0025 23.3 4.7 49 30-81 15-67 (90)
117 PRK00022 lolB outer membrane l 30.6 1.2E+02 0.0027 26.7 5.6 58 6-63 47-108 (202)
118 PF05938 Self-incomp_S1: Plant 29.3 1.2E+02 0.0026 23.7 4.8 39 320-361 28-68 (110)
119 COG1622 CyoA Heme/copper-type 29.0 2.2E+02 0.0047 26.3 7.0 32 69-101 167-198 (247)
120 PF14321 DUF4382: Domain of un 28.8 3.2E+02 0.0069 22.4 7.5 61 21-87 61-123 (139)
121 PF06832 BiPBP_C: Penicillin-B 27.9 54 0.0012 24.6 2.5 12 50-61 72-83 (89)
122 PF09937 DUF2169: Uncharacteri 27.8 1.2E+02 0.0027 28.7 5.3 75 2-78 208-290 (297)
123 PF14734 DUF4469: Domain of un 27.4 1.4E+02 0.003 23.4 4.7 34 65-98 52-85 (102)
124 PRK15249 fimbrial chaperone pr 27.4 80 0.0017 29.2 3.9 34 19-52 84-124 (253)
125 PRK09926 putative chaperone pr 26.3 79 0.0017 29.1 3.7 22 19-40 80-101 (246)
126 PF07228 SpoIIE: Stage II spor 26.3 1.5E+02 0.0032 25.3 5.4 50 29-78 72-126 (193)
127 PRK15299 fimbrial chaperone pr 25.9 84 0.0018 28.5 3.7 22 19-40 75-96 (227)
128 MTH00027 COX2 cytochrome c oxi 25.7 2.1E+02 0.0045 26.7 6.3 77 256-364 173-250 (262)
129 PF10636 hemP: Hemin uptake pr 25.5 1.1E+02 0.0023 19.5 3.0 20 20-39 13-32 (38)
130 PRK15195 fimbrial chaperone pr 25.3 1E+02 0.0022 28.0 4.1 34 19-52 76-115 (229)
131 COG4263 NosZ Nitrous oxide red 24.9 2.6E+02 0.0056 28.2 6.9 42 320-361 593-635 (637)
132 PF13464 DUF4115: Domain of un 23.6 1.9E+02 0.0041 21.0 4.7 22 43-64 39-60 (77)
133 PF14524 Wzt_C: Wzt C-terminal 21.8 3.3E+02 0.0071 21.6 6.3 47 52-98 55-107 (142)
134 PF03550 LolB: Outer membrane 21.0 1.7E+02 0.0036 24.7 4.4 58 6-64 4-66 (157)
135 PF04225 OapA: Opacity-associa 21.0 1.6E+02 0.0035 22.2 3.8 41 23-63 41-82 (85)
136 PRK10183 hypothetical protein; 20.7 1.5E+02 0.0032 20.6 3.1 21 19-39 30-50 (56)
137 PF12992 DUF3876: Domain of un 20.6 4.1E+02 0.0088 20.5 6.5 31 9-39 15-45 (95)
138 PF00345 PapD_N: Pili and flag 20.4 1.6E+02 0.0036 23.3 4.1 34 19-52 54-92 (122)
139 PF03633 Glyco_hydro_65C: Glyc 20.2 2.8E+02 0.006 18.5 5.0 30 30-61 9-38 (54)
140 PF06355 Aegerolysin: Aegeroly 20.0 2.5E+02 0.0053 23.1 5.0 56 29-84 2-60 (131)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.7e-66 Score=527.54 Aligned_cols=364 Identities=58% Similarity=1.046 Sum_probs=275.1
Q ss_pred CCcccCCcc---cCCCC-CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEE
Q 016876 5 SNAKVSDVT---MNCNA-ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTN 80 (381)
Q Consensus 5 ~~~~~~~~~---~~~~~-~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRyd 80 (381)
.+..+||.. ++|+. ...+|+|++||+|||||||+|+.+.+.|+||||+|+|||+||.+++|++++.|.|++|||||
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRyd 246 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTN 246 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEE
Confidence 455666653 45665 66899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCccceeeeeeccccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhccccccccC-
Q 016876 81 VLLTADQPPARYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKSLH- 159 (381)
Q Consensus 81 VlV~~~~~~g~y~lr~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~- 159 (381)
|+|++++.+|+||||+.....|.....+....|||+|.++.... .+..+..+..++......+...++.+.
T Consensus 247 Vlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~--------~p~~~~~~~~~~~~~~~~~~~~l~~~~~ 318 (539)
T TIGR03389 247 VLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSA--------KPILPTLPAYNDTAAATNFSNKLRSLNS 318 (539)
T ss_pred EEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCC--------CCCCCCCCCCCchhhhhHHHhhcccccc
Confidence 99999988899999998765443223346689999998865411 111122222222221111112333332
Q ss_pred ---CCCCCcccceeEEEEeceeeeecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCCCCcccCCCCCCCC
Q 016876 160 ---QVQVPTVIDENLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPP 236 (381)
Q Consensus 160 ---~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p 236 (381)
+..+|..++.++.+.+++...... .......++..+.|+|||++|..|.+ |+|++.+..+++.+..+++..+|
T Consensus 319 ~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~w~in~~s~~~p~~-p~l~~~~~~~~~~~~~~~~~~~p 394 (539)
T TIGR03389 319 AQYPANVPVTIDRRLFFTIGLGLDPCP---NNTCQGPNGTRFAASMNNISFVMPTT-ALLQAHYFGISGVFTTDFPANPP 394 (539)
T ss_pred cCCCCCCCCCCCeEEEEEeecccccCc---ccccccCCCcEEEEEECCcccCCCCc-chhhhhhcccCCccccCCccCCC
Confidence 223344567776666554321100 00011123556889999999988877 56677666566666667788888
Q ss_pred cccCCCCCC-CCCcccCCCccceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCC
Q 016876 237 IIFDYTGNV-SRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDP 315 (381)
Q Consensus 237 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p 315 (381)
+.|++++.. +..+. ...+++++.++.|++|+|+|.|.+.+....||||||||+|+|+++|.|.|+..+....+|+.||
T Consensus 395 ~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP 473 (539)
T TIGR03389 395 TKFNYTGTNLPNNLF-TTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDP 473 (539)
T ss_pred ccccCCCCCcccccc-cccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCC
Confidence 888765531 21221 1336778999999999999999643335589999999999999999999987655557899999
Q ss_pred CccceEEeCCCcEEEEEEEeCCceeEEEEecchhhHhccceEEEEEecCCCcCCCCCCCCCCCCCC
Q 016876 316 PRRNTIGTPPGGWVAVRFVAENPGIWLLHCHIDSHLTWGLAMAFLVENGVGKLQTVQPPPLDLPRC 381 (381)
Q Consensus 316 ~~rDtv~v~~~~~~~i~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 381 (381)
++|||+.|++++|++|||++||||.|+|||||+||++.||+++|.+..+++..++++++|..+|+|
T Consensus 474 ~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 474 PERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 999999999999999999999999999999999999999999999988877788899999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=6e-63 Score=498.82 Aligned_cols=332 Identities=28% Similarity=0.376 Sum_probs=253.9
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCc-cceeeee
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPA-RYYMAAH 97 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g-~y~lr~~ 97 (381)
..++++|++||+|||||||+++.+.+.|+||||+|+|||+||.+++|+.++.|.|++||||||||+++|.++ +||||+.
T Consensus 215 ~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~ 294 (596)
T PLN00044 215 TYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVAS 294 (596)
T ss_pred ccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEe
Confidence 345899999999999999999999999999999999999999999999999999999999999999999765 8999986
Q ss_pred ec-cccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCC-CCCcccchhccccccccC--C--CCCCcccceeE
Q 016876 98 AY-NTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPG-FNDTATATAFTARIKSLH--Q--VQVPTVIDENL 171 (381)
Q Consensus 98 ~~-~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~l~~l~--~--~~~p~~~d~~~ 171 (381)
.. ..+. .+++..+.|||+|.++... ....+|..+. ..++.....+...++.+. + .+.|...+...
T Consensus 295 ~~~~~~~-~~~~~~~~AIl~Y~~~~~~--------~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 365 (596)
T PLN00044 295 ARFVDAA-VVDKLTGVAILHYSNSQGP--------ASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYG 365 (596)
T ss_pred cccccCc-cccCcceeEEEEECCCCCC--------CCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceee
Confidence 42 2332 2355678899999875431 0111343342 444443322323333221 1 22222223222
Q ss_pred EEEeceeeeecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCCCCcccCCCCCCCCcccCCCCCCCCCccc
Q 016876 172 FFTVGLGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYTGNVSRGLWQ 251 (381)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 251 (381)
.+.++........ ....+ +| ++.|+|||++|..|++ |+|.+++.+.++.+.++||..+|...
T Consensus 366 ~~~~~~~~~~~~~-~~~~~---~g-~~~~s~Nnvsf~~p~~-p~L~a~~~~~~gv~~~~fp~~pp~~~------------ 427 (596)
T PLN00044 366 DITVTDVYLLQSM-APELI---DG-KLRATLNEISYIAPST-PLMLAQIFNVPGVFKLDFPNHPMNRL------------ 427 (596)
T ss_pred EEeeeeeeeeccc-ccccc---CC-eEEEEECcccCCCCCC-cchhhhhccCCCcccCCCCCCCCccc------------
Confidence 3333221100000 00011 22 6789999999999988 77777777778889888888777310
Q ss_pred CCCccceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEE
Q 016876 252 PRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAV 331 (381)
Q Consensus 252 ~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i 331 (381)
....+.++.+++|++|||+|+|.. ...||||||||+|+||++|.|.|++. ....||+.||++|||+.|++++|++|
T Consensus 428 ~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aI 503 (596)
T PLN00044 428 PKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYAFFVVGMDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAI 503 (596)
T ss_pred cccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCccEEEEeecCCCCCCC-cccccccCCCCccceEEeCCCCeEEE
Confidence 122567889999999999999953 45899999999999999999999865 45689999999999999999999999
Q ss_pred EEEeCCceeEEEEecchhhHhccceEEEEEecCCCc-CCCCCCCCCCCCCC
Q 016876 332 RFVAENPGIWLLHCHIDSHLTWGLAMAFLVENGVGK-LQTVQPPPLDLPRC 381 (381)
Q Consensus 332 ~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~-~~~~~~~p~~~~~c 381 (381)
||++||||.|+||||++.|...||...|.|+++.+. .+++++||.++++|
T Consensus 504 RF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 504 LVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred EEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcc
Confidence 999999999999999999999999999999988875 78899999999999
No 3
>PLN02792 oxidoreductase
Probab=100.00 E-value=6.8e-63 Score=496.15 Aligned_cols=332 Identities=23% Similarity=0.294 Sum_probs=249.0
Q ss_pred cCCCC--CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCcc
Q 016876 14 MNCNA--ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPAR 91 (381)
Q Consensus 14 ~~~~~--~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~ 91 (381)
+|+++ ..++|+|++||+|||||||+|+.+.+.|+||||+|+|||+||++++|..++.|.|++||||||||++++++|+
T Consensus 184 iNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~ 263 (536)
T PLN02792 184 INGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQN 263 (536)
T ss_pred EeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCce
Confidence 45554 3578999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred ceeeeeeccccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhc----cccccccCCCCCCccc
Q 016876 92 YYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAF----TARIKSLHQVQVPTVI 167 (381)
Q Consensus 92 y~lr~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~l~~l~~~~~p~~~ 167 (381)
|||++.....+ .+....|||+|.++.... +..+..|..++......+ ...+.+..+.++|+..
T Consensus 264 Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~---------~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~ 330 (536)
T PLN02792 264 YSIVVSTRFIA----AKVLVSSTLHYSNSKGHK---------IIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGS 330 (536)
T ss_pred EEEEEEeccCC----CCCceEEEEEECCCCCCC---------CCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcc
Confidence 99999864332 235678999998764310 011222223332221111 1112111122333322
Q ss_pred ceeEEEEeceeee-ecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCCCCcccCC-CCCCCCcccCCCCCC
Q 016876 168 DENLFFTVGLGLI-NCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTD-FPPVPPIIFDYTGNV 245 (381)
Q Consensus 168 d~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~ 245 (381)
+....+.++.... .+. ... .+..+.|+|||++|..|++ |+|.+++..+.|.+..+ ++..+|..++.
T Consensus 331 ~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~iN~~s~~~p~~-p~L~a~~~~~~g~~~~~~~~~~p~~~~~~---- 398 (536)
T PLN02792 331 YHYGKMKISRTLILESS---AAL----VKRKQRYAINGVSFVPSDT-PLKLADHFKIKGVFKVGSIPDKPRRGGGM---- 398 (536)
T ss_pred cccceeccceeEEeccc---ccc----cCceeEEEECCcccCCCCC-chhhhhhhccCCCcCcccCccCCcccCCC----
Confidence 2211122111110 000 000 1125689999999999988 66666665666766543 66666642211
Q ss_pred CCCcccCCCccceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCC
Q 016876 246 SRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPP 325 (381)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~ 325 (381)
...+.++.++.|++|||+|+|.. ...||||||||+|+||++|.|.|++. ....||+.||++|||+.|++
T Consensus 399 -------~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nP~~RdTv~v~~ 467 (536)
T PLN02792 399 -------RLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRA-SRREYNLKDAISRSTTQVYP 467 (536)
T ss_pred -------ccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCcc-cccccCcCCCCccceEEECC
Confidence 23467889999999999999953 45799999999999999999999864 45689999999999999999
Q ss_pred CcEEEEEEEeCCceeEEEEecchhhHhccceEEEEEecCCCcCCCCCCCCCCCCCC
Q 016876 326 GGWVAVRFVAENPGIWLLHCHIDSHLTWGLAMAFLVENGVGKLQTVQPPPLDLPRC 381 (381)
Q Consensus 326 ~~~~~i~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 381 (381)
++|++|||++||||.|+||||+..|+..||..+|.|+++.+..+++++||.++++|
T Consensus 468 ~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 468 ESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred CCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 99999999999999999999999999999999999998888888999999999999
No 4
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.3e-62 Score=493.54 Aligned_cols=332 Identities=24% Similarity=0.301 Sum_probs=245.4
Q ss_pred cCCCCCCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccce
Q 016876 14 MNCNAETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYY 93 (381)
Q Consensus 14 ~~~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~ 93 (381)
+|+++..++++|++||+|||||||+|+.+.+.|+||||+|+|||+||++++|..++.|.|++||||||||++++++|+||
T Consensus 195 iNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~ 274 (543)
T PLN02991 195 INGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYY 274 (543)
T ss_pred EccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEE
Confidence 34444557899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcc--cchhccccccccCCCCCCcccceeE
Q 016876 94 MAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTA--TATAFTARIKSLHQVQVPTVIDENL 171 (381)
Q Consensus 94 lr~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~l~~l~~~~~p~~~d~~~ 171 (381)
||+...... ......|||+|.++..... ...|..+...+.. ........+.+..+.+.|...+...
T Consensus 275 i~~~~~~~~----~~~~~~AIl~Y~g~~~~~~--------~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~ 342 (543)
T PLN02991 275 IVVSSRFTS----KILITTGVLHYSNSAGPVS--------GPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYG 342 (543)
T ss_pred EEEeeccCC----CCcceEEEEEeCCCCCCCC--------CCCCCCCccccccccchhhhhhcccCCCCCCCCCcccccc
Confidence 999763321 2356789999998643110 0112111111010 0111122333322223332211111
Q ss_pred EEEeceeee-ecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCCCCcccCC-CCCCCCcccCCCCCCCCCc
Q 016876 172 FFTVGLGLI-NCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTD-FPPVPPIIFDYTGNVSRGL 249 (381)
Q Consensus 172 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~ 249 (381)
.+.++.... .+. ...+ +| .+.|+|||.+|..|.+ |+|.+++...+|.+..+ ++..+|..
T Consensus 343 ~~~~~~~~~~~~~---~~~~---~g-~~~~~iN~~s~~~p~~-p~L~~~~~~~~g~~~~~~~~~~~~~~----------- 403 (543)
T PLN02991 343 KINITRTIRLANS---AGNI---EG-KQRYAVNSASFYPADT-PLKLADYFKIAGVYNPGSIPDQPTNG----------- 403 (543)
T ss_pred ccccceeEEEeec---cccc---Cc-eEEEEECCCccCCCCC-ChhhhhhhcccCccccccccccCCCC-----------
Confidence 111111100 000 0000 22 4689999999998887 67667776677776544 44433310
Q ss_pred ccCCCccceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEE
Q 016876 250 WQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWV 329 (381)
Q Consensus 250 ~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~ 329 (381)
.....+.++.+++|++|||+|+|.. ...||||||||+|+||++|.|.|++. ....||+.||++|||+.|++++|+
T Consensus 404 -~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~ 478 (543)
T PLN02991 404 -AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGMELGKWSAA-SRKVYNLNDAVSRCTVQVYPRSWT 478 (543)
T ss_pred -ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeCCCCCCcc-cccccCCCCCCcccEEEECCCCEE
Confidence 0012356889999999999999963 45899999999999999999999865 456799999999999999999999
Q ss_pred EEEEEeCCceeEEEEecchhhHhccceEEEEEecCCCcCCCCCCCCCCCCCC
Q 016876 330 AVRFVAENPGIWLLHCHIDSHLTWGLAMAFLVENGVGKLQTVQPPPLDLPRC 381 (381)
Q Consensus 330 ~i~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 381 (381)
+|||++||||.|+|||||..|+..||..++.|.++++..+++++||.++++|
T Consensus 479 vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 479 AIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLC 530 (543)
T ss_pred EEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCcc
Confidence 9999999999999999999999999999999999988889999999999999
No 5
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.3e-61 Score=479.66 Aligned_cols=343 Identities=50% Similarity=0.838 Sum_probs=285.5
Q ss_pred CeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeeeec
Q 016876 20 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAY 99 (381)
Q Consensus 20 ~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~~~ 99 (381)
.++++|++||+|||||||++....+.|+|+||+|+|||+||.+++|..+++|.|+|||||||||+++|.+++|+|++..+
T Consensus 208 ~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~ 287 (563)
T KOG1263|consen 208 TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPY 287 (563)
T ss_pred eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEee
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhccccccccC----CCCCCcccceeEEEEe
Q 016876 100 NTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKSLH----QVQVPTVIDENLFFTV 175 (381)
Q Consensus 100 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~----~~~~p~~~d~~~~~~~ 175 (381)
..+.....+....|+|+|.++..... ...+..+..++.++...+..+...++.+. +.+.|++.+......+
T Consensus 288 ~~~~~~~~~~t~~~~l~y~~~~~~~s-----~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i 362 (563)
T KOG1263|consen 288 FDASNVPFNLTTTGILRYSGSTHPAS-----EKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITI 362 (563)
T ss_pred eccCCcceeeeEEEEEEEeCCcccCc-----ccCcccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceee
Confidence 76532111678999999998433110 00122233444445444444444555543 4567777777777777
Q ss_pred ceeeeecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCCCCcccCCCCCCCCcccCCCCCCCCCcccCCCc
Q 016876 176 GLGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYTGNVSRGLWQPRKR 255 (381)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 255 (381)
+.+...+... ...++...++||+.+|..|++|.++.+++...++.+..++|..||..+++.+ .+.+
T Consensus 363 ~~~~~~~~~~------~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~--------~~~~ 428 (563)
T KOG1263|consen 363 GLTLKLCNSD------NKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTG--------PTLG 428 (563)
T ss_pred eccEEeccCC------CCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCcc--------cccc
Confidence 6665544310 0235577899999999999998888888888888888899999988777654 1357
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCC-CccCCCCCCccceEEeCCCcEEEEEEE
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDT-AKFNLIDPPRRNTIGTPPGGWVAVRFV 334 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~-~~~n~~~p~~rDtv~v~~~~~~~i~f~ 334 (381)
+.++.+++++.||++++|.+......||||||||.|+|++.|.|.|++.++. ..||+.+|+.||||.|+||+|++|||.
T Consensus 429 t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~ 508 (563)
T KOG1263|consen 429 TSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFV 508 (563)
T ss_pred ceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEE
Confidence 8899999999999999998866678899999999999999999999985555 789999999999999999999999999
Q ss_pred eCCceeEEEEecchhhHhccceEEEEEecCCCcCCCCCCCCCCCCCC
Q 016876 335 AENPGIWLLHCHIDSHLTWGLAMAFLVENGVGKLQTVQPPPLDLPRC 381 (381)
Q Consensus 335 ~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 381 (381)
+||||.|+||||+.+|...||...|.|..+++.++++.++|.+.++|
T Consensus 509 adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 509 ADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKC 555 (563)
T ss_pred cCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999
No 6
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=4.4e-61 Score=485.22 Aligned_cols=321 Identities=23% Similarity=0.363 Sum_probs=237.5
Q ss_pred CeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeeeec
Q 016876 20 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHAY 99 (381)
Q Consensus 20 ~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~~~ 99 (381)
.++|+|++||+|||||||+|+.+.+.|+||||+|+|||+||++++|..++.|.|++||||||||++++++|+|||++...
T Consensus 206 ~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~ 285 (552)
T PLN02354 206 EPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTR 285 (552)
T ss_pred ceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999889999998743
Q ss_pred cccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCC-CC-CcccchhccccccccCCCCCCc--------ccce
Q 016876 100 NTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPG-FN-DTATATAFTARIKSLHQVQVPT--------VIDE 169 (381)
Q Consensus 100 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~-~~-~~~~~~~~~~~l~~l~~~~~p~--------~~d~ 169 (381)
..+ .+....|||+|.++.... ++..|..+. .. .......+..++.+....+.+. ..++
T Consensus 286 ~~~----~~~~~~ail~Y~g~~~~~--------~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~ 353 (552)
T PLN02354 286 FLK----KVLTTTGIIRYEGGKGPA--------SPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITR 353 (552)
T ss_pred ccC----CCccEEEEEEECCCCCCC--------CCCCCCCCcccccchhhhhhhhhcccccccCCCCCCccccccccccc
Confidence 221 345688999998764411 111221111 00 0000011111222211111111 1222
Q ss_pred eEEEEeceeeeecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCC-CCcccCC-CCCCCCcccCCCCCCCC
Q 016876 170 NLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQ-PGIFTTD-FPPVPPIIFDYTGNVSR 247 (381)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~-~~~~~~~-~~~~~p~~~~~~~~~~~ 247 (381)
++.+..+.. . .+| ...|+|||++|..|++ |+|.+.+..+ .|.+..+ ++..+|..++
T Consensus 354 ~~~~~~~~~----------~---~~g-~~~~~iNn~s~~~p~~-P~L~~~~~~~~~g~~~~~~~~~~pp~~~~------- 411 (552)
T PLN02354 354 TIKLVNSAS----------K---VDG-KLRYALNGVSHVDPET-PLKLAEYFGVADKVFKYDTIKDNPPAKIT------- 411 (552)
T ss_pred eEEEecccc----------c---CCc-eEEEEECCccCCCCCC-ChHHhhhhcccCCccccCccccCCccccC-------
Confidence 232222110 0 122 5679999999998888 5555544333 3544323 3444443211
Q ss_pred CcccCCCccceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCc
Q 016876 248 GLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGG 327 (381)
Q Consensus 248 ~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~ 327 (381)
....++.++.++.|++|+|+|+|.. ...||||||||+|+||++|.|.|++. ....||+.||++|||+.|+++|
T Consensus 412 ---~~~~~~~v~~~~~~~~VeiVi~n~~---~~~HP~HLHGh~F~Vlg~G~G~~~~~-~~~~~nl~nP~rRDTv~vp~~G 484 (552)
T PLN02354 412 ---KIKIQPNVLNITFRTFVEIIFENHE---KSMQSWHLDGYSFFAVAVEPGTWTPE-KRKNYNLLDAVSRHTVQVYPKS 484 (552)
T ss_pred ---ccccCCeeEEcCCCCEEEEEEeCCC---CCCCCCcCCCccEEEEeecCCCCCcc-ccccCCcCCCCccceEEeCCCC
Confidence 0123567889999999999999963 55899999999999999999999864 3567899999999999999999
Q ss_pred EEEEEEEeCCceeEEEEecchhhHhccceEEEEEecCCCcCCCCCCCCCCCCCC
Q 016876 328 WVAVRFVAENPGIWLLHCHIDSHLTWGLAMAFLVENGVGKLQTVQPPPLDLPRC 381 (381)
Q Consensus 328 ~~~i~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 381 (381)
|++|||++||||.|+|||||+.|+..||...+.|.++++..++++++|.+.+.|
T Consensus 485 w~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 485 WAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLC 538 (552)
T ss_pred eEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCcccccc
Confidence 999999999999999999999999999999999998888888888899999999
No 7
>PLN02835 oxidoreductase
Probab=100.00 E-value=5.4e-61 Score=483.88 Aligned_cols=320 Identities=24% Similarity=0.379 Sum_probs=236.2
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeeee
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHA 98 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~~ 98 (381)
..+.++|++||+|||||||+|+.+.+.|+||||+|+|||+||++++|..++.|.|++||||||||++++++|+||||+..
T Consensus 200 ~~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~ 279 (539)
T PLN02835 200 TQSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVAST 279 (539)
T ss_pred cCceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999888999999864
Q ss_pred ccccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCC---CcccchhccccccccCCCCCCc--------cc
Q 016876 99 YNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFN---DTATATAFTARIKSLHQVQVPT--------VI 167 (381)
Q Consensus 99 ~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~~~~~l~~l~~~~~p~--------~~ 167 (381)
...+ .+....|||+|.++.... +..+|..+... +..........+.+....+.+. ..
T Consensus 280 ~~~~----~~~~~~ail~Y~~~~~~~--------~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 347 (539)
T PLN02835 280 RFTR----QILTATAVLHYSNSRTPA--------SGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITP 347 (539)
T ss_pred cccC----CCcceEEEEEECCCCCCC--------CCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCC
Confidence 2222 235688999998764311 11122211110 0000001111122111111111 11
Q ss_pred ceeEEEEeceeeeecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCCCCcccCCC-CCCCCcccCCCCCCC
Q 016876 168 DENLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDF-PPVPPIIFDYTGNVS 246 (381)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~ 246 (381)
++++.+..... ..+| ...|+|||++|..|.. |+|.+++....+.++.+. ...++
T Consensus 348 ~~~~~~~~~~~-------------~~~g-~~~w~iN~~s~~~p~~-P~L~~~~~~~~~~~~~~~~~~~~~---------- 402 (539)
T PLN02835 348 TKTIVLANSAP-------------LING-KQRYAVNGVSYVNSDT-PLKLADYFGIPGVFSVNSIQSLPS---------- 402 (539)
T ss_pred CceEEEecccc-------------ccCC-eEEEEECCcccCCCCC-ChhhhhhhcCCCccccCccccCCC----------
Confidence 33333322110 0122 4679999999998887 555555555555554332 11111
Q ss_pred CCcccCCCccceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCC
Q 016876 247 RGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPG 326 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~ 326 (381)
.. ....++.++.++.|++|+|+|+|.. ...||||||||+|+||++|.|.|+... ...+|+.||++|||+.|+++
T Consensus 403 -~~-~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G~g~~~~~~-~~~~nl~nP~~RDTv~vp~~ 476 (539)
T PLN02835 403 -GG-PAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWTPAK-RSLYNLVDALTRHTAQVYPK 476 (539)
T ss_pred -CC-ccccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEeccCCCCCccc-ccccCCCCCCccceEEeCCC
Confidence 10 1123577889999999999999964 558999999999999999999887542 45678999999999999999
Q ss_pred cEEEEEEEeCCceeEEEEecchhhHhccceEEEEEecCCCcCCCCCCCCCCCCCC
Q 016876 327 GWVAVRFVAENPGIWLLHCHIDSHLTWGLAMAFLVENGVGKLQTVQPPPLDLPRC 381 (381)
Q Consensus 327 ~~~~i~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 381 (381)
+|++|||++||||.|+|||||++|+..||+++|.|+++.+...+++++|.++|+|
T Consensus 477 gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 477 SWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLC 531 (539)
T ss_pred CEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcccccc
Confidence 9999999999999999999999999999999999998888888999999999999
No 8
>PLN02604 oxidoreductase
Probab=100.00 E-value=4.2e-60 Score=481.97 Aligned_cols=331 Identities=31% Similarity=0.532 Sum_probs=233.2
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCc-cceeeee
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPA-RYYMAAH 97 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g-~y~lr~~ 97 (381)
..++++|++||+|||||||+|+.+.++|+||||+|+|||+||++|+|++++.|.|++||||||||++++++| +||||+.
T Consensus 222 ~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~ 301 (566)
T PLN02604 222 SPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTS 301 (566)
T ss_pred CceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEe
Confidence 445899999999999999999999999999999999999999999999999999999999999999998764 8999987
Q ss_pred eccccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhccccccccCC--CCCCcccceeEEEEe
Q 016876 98 AYNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKSLHQ--VQVPTVIDENLFFTV 175 (381)
Q Consensus 98 ~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~~--~~~p~~~d~~~~~~~ 175 (381)
....+. +.....|||+|.+......+ +...+..+.+++..........+..+.+ ...+...++++.+..
T Consensus 302 ~~~~~~---~~~~~~aIL~Y~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 372 (566)
T PLN02604 302 VVSRNN---TTPPGLAIFNYYPNHPRRSP------PTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLN 372 (566)
T ss_pred cccCCC---CCcceeEEEEECCCCCCCCC------CCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEec
Confidence 544331 23567999999864321100 0011111122221111000011111111 122334566665433
Q ss_pred ceeeeecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCCCCcccCCCCCCCCcccCC---CCCCCCCcccC
Q 016876 176 GLGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDY---TGNVSRGLWQP 252 (381)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~ 252 (381)
.... .+..+.|+||+++|..+.. |+|.+.+....+.++.+. +|..+.. +..........
T Consensus 373 ~~~~--------------~~~~~~w~in~~~~~~p~~-p~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 434 (566)
T PLN02604 373 TQNE--------------VNGYRRWSVNNVSFNLPHT-PYLIALKENLTGAFDQTP---PPEGYDFANYDIYAKPNNSNA 434 (566)
T ss_pred cccc--------------cCCeEEEEECcccCCCCCC-chhHhhhhcCCCcccCCC---CCcccccccccccCCcccccc
Confidence 2211 1124689999999988877 455454444444443211 1111110 00000000011
Q ss_pred CCccceEEeecCCEEEEEEeecCCc---CCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEE
Q 016876 253 RKRTKLYKLKFGSRVQIVFQDTSIV---SVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWV 329 (381)
Q Consensus 253 ~~~~~~~~~~~g~~v~~~i~n~~~~---~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~ 329 (381)
+.++.++.++.|++|+++|.|...+ ....||||||||+|+|+++|.|.|++.++...+|+.||++|||+.|++++|+
T Consensus 435 ~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwv 514 (566)
T PLN02604 435 TSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWT 514 (566)
T ss_pred ccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceE
Confidence 3356788999999999999996421 2567999999999999999999998776667899999999999999999999
Q ss_pred EEEEEeCCceeEEEEecchhhHhccceEEEEEecCCCcCCCCCCCCCCCCCC
Q 016876 330 AVRFVAENPGIWLLHCHIDSHLTWGLAMAFLVENGVGKLQTVQPPPLDLPRC 381 (381)
Q Consensus 330 ~i~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 381 (381)
+|||++||||.|+|||||+||+..||+++|.+. .++++.+|.+++.|
T Consensus 515 vIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 515 ALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-----IERVGKLPSSIMGC 561 (566)
T ss_pred EEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-----hhhccCCCCCcCcc
Confidence 999999999999999999999999999999742 24566788899999
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=4.2e-60 Score=481.17 Aligned_cols=330 Identities=31% Similarity=0.531 Sum_probs=229.8
Q ss_pred CeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCC-ccceeeeee
Q 016876 20 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPP-ARYYMAAHA 98 (381)
Q Consensus 20 ~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~-g~y~lr~~~ 98 (381)
+.+|+|++||+|||||||+|+.+.+.|+||||+|+|||+||++|+|++++.|.|++||||||||++++++ ++||||+..
T Consensus 225 p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~ 304 (574)
T PLN02191 225 PQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGV 304 (574)
T ss_pred ceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEc
Confidence 3479999999999999999999999999999999999999999999999999999999999999999876 589999976
Q ss_pred ccccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhcccccccc-CCCCCCc-ccceeEEEEec
Q 016876 99 YNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKSL-HQVQVPT-VIDENLFFTVG 176 (381)
Q Consensus 99 ~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l-~~~~~p~-~~d~~~~~~~~ 176 (381)
...+. ......|||+|.+......+ ....+..+.+.+......+...+... .....|. ..+.++.+...
T Consensus 305 ~~~~~---~~~~~~ail~Y~~~~~~~~p------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 375 (574)
T PLN02191 305 RGRKP---NTTQALTILNYVTAPASKLP------SSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQ 375 (574)
T ss_pred cccCC---CCCCceEEEEECCCCCCCCC------CCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEeccc
Confidence 44331 22345699999876542111 00011122222222111111111110 0111222 23444433211
Q ss_pred eeeeecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCCCCcccCCCCCCC-CcccCCCCCCCCCcccCCCc
Q 016876 177 LGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVP-PIIFDYTGNVSRGLWQPRKR 255 (381)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~ 255 (381)
. . ......|.|||++|..|..|.|+ +.+.+..+.+..+.+... +..|+... +..++..+.+
T Consensus 376 ~-~--------------~~~~~~~~~n~~s~~~p~~P~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 437 (574)
T PLN02191 376 N-L--------------IDGYTKWAINNVSLVTPATPYLG-SVKYNLKLGFNRKSPPRSYRMDYDIMN--PPPFPNTTTG 437 (574)
T ss_pred c-e--------------eCCeEEEEECcccCcCCCcchHH-HHhhccCcccccCCCcccccccccccC--CCcccccccc
Confidence 0 0 11235799999999988884444 444344444433332211 11121111 1112222345
Q ss_pred cceEEeecCCEEEEEEeecCCc---CCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEE
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIV---SVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVR 332 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~---~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~ 332 (381)
+.++.++.|++|+|+|+|.... ....||||||||+|+||++|.|.|++......+|+.||++|||+.+++++|++||
T Consensus 438 ~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIR 517 (574)
T PLN02191 438 NGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIR 517 (574)
T ss_pred ceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEE
Confidence 6788999999999999996311 2568999999999999999999998754456789999999999999999999999
Q ss_pred EEeCCceeEEEEecchhhHhccceEEEEEecCCCcCCCCCCCCCCCCCC
Q 016876 333 FVAENPGIWLLHCHIDSHLTWGLAMAFLVENGVGKLQTVQPPPLDLPRC 381 (381)
Q Consensus 333 f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 381 (381)
|++||||.|+|||||+||++.||.++|.. +. ++++.+|.+++.|
T Consensus 518 f~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e--~~---~~~~~~p~~~~~C 561 (574)
T PLN02191 518 FVTDNPGVWFFHCHIEPHLHMGMGVVFAE--GL---NRIGKIPDEALGC 561 (574)
T ss_pred EECCCCEEEEEecCchhhhhcCCEEEEec--Ch---hhccCCCcchhhh
Confidence 99999999999999999999999999963 33 3344578888988
No 10
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=4.5e-60 Score=480.27 Aligned_cols=331 Identities=31% Similarity=0.535 Sum_probs=233.2
Q ss_pred CeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCC-ccceeeeee
Q 016876 20 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPP-ARYYMAAHA 98 (381)
Q Consensus 20 ~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~-g~y~lr~~~ 98 (381)
+.+|+|++||+|||||||+|+.+.+.|+||||+|+|||+||++|+|++++.|.|++||||||||++++.+ ++||||+..
T Consensus 202 ~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~ 281 (541)
T TIGR03388 202 PQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGV 281 (541)
T ss_pred ceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEec
Confidence 3569999999999999999999999999999999999999999999999999999999999999999865 589999976
Q ss_pred ccccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhcccccccc-CCCCCCcccceeEEEEece
Q 016876 99 YNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKSL-HQVQVPTVIDENLFFTVGL 177 (381)
Q Consensus 99 ~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l-~~~~~p~~~d~~~~~~~~~ 177 (381)
...+ .......|||+|.+......+ +...+..+.+.+......+...+... .....|..+++++.+....
T Consensus 282 ~~~~---~~~~~~~aiL~Y~~~~~~~~p------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (541)
T TIGR03388 282 RGRK---PNTPPGLTVLNYYPNSPSRLP------PTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQ 352 (541)
T ss_pred ccCC---CCCccEEEEEEECCCCCCCCC------CCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccC
Confidence 4432 123467899999875431110 00111123333221111111111111 1112334566666543321
Q ss_pred eeeecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCCCCcccCCCC-CCCCcccCCCCCCCCCcccCCCcc
Q 016876 178 GLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFP-PVPPIIFDYTGNVSRGLWQPRKRT 256 (381)
Q Consensus 178 ~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~ 256 (381)
.. .+....|++||++|..|.. |+|.+.+.+..+.+..+.+ ...+..|+.... +. ....+.++
T Consensus 353 ~~--------------~~~~~~~~~n~~s~~~p~~-p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 415 (541)
T TIGR03388 353 NK--------------INGYTKWAINNVSLTLPHT-PYLGSLKYNLLNAFDQKPPPENYPRDYDIFKP-PP-NPNTTTGN 415 (541)
T ss_pred cc--------------cCceEEEEECcccCCCCCc-cHHHHHhhcCCccccCCCCcccccccccccCC-Cc-ccccccCc
Confidence 10 1123579999999988877 4544443333333321110 111111111100 00 01123467
Q ss_pred ceEEeecCCEEEEEEeecCCc---CCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEE
Q 016876 257 KLYKLKFGSRVQIVFQDTSIV---SVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRF 333 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~---~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f 333 (381)
.++.++.|++|+++|+|...+ ....||||||||+|+|+++|.|.|+...+...+|+.||++|||+.|++++|++|||
T Consensus 416 ~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF 495 (541)
T TIGR03388 416 GIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRF 495 (541)
T ss_pred eEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEE
Confidence 789999999999999996421 24679999999999999999999986555567999999999999999999999999
Q ss_pred EeCCceeEEEEecchhhHhccceEEEEEecCCCcCCCCCCCCCCCCCC
Q 016876 334 VAENPGIWLLHCHIDSHLTWGLAMAFLVENGVGKLQTVQPPPLDLPRC 381 (381)
Q Consensus 334 ~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 381 (381)
++||||.|+|||||+||++.||+++|.+. .++++.+|.++++|
T Consensus 496 ~adNPG~W~~HCHi~~H~~~GM~~~~~e~-----~~~~~~~P~~~~~C 538 (541)
T TIGR03388 496 VADNPGVWAFHCHIEPHLHMGMGVVFAEG-----VEKVGKLPKEALGC 538 (541)
T ss_pred ECCCCeEeeeeccchhhhhcccEEEEecc-----ccccCCCCccccCC
Confidence 99999999999999999999999999742 34567789999999
No 11
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=3.2e-60 Score=477.15 Aligned_cols=326 Identities=24% Similarity=0.410 Sum_probs=233.5
Q ss_pred ccCCCC-CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCC--
Q 016876 13 TMNCNA-ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPP-- 89 (381)
Q Consensus 13 ~~~~~~-~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~-- 89 (381)
++|+++ ..++++|++||+|||||||+|+.+.+.|+||||+|+|||+||.+++|..++.|.|++||||||||++++++
T Consensus 192 liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g 271 (545)
T PLN02168 192 LFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVG 271 (545)
T ss_pred EEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCC
Confidence 345554 46799999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred --ccceeeeeeccccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhccc----cccccCCCCC
Q 016876 90 --ARYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTA----RIKSLHQVQV 163 (381)
Q Consensus 90 --g~y~lr~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~----~l~~l~~~~~ 163 (381)
++||||+.....+ ......|||+|.++.... ....+..+...+......... .+.+..+.+.
T Consensus 272 ~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~--------~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~ 339 (545)
T PLN02168 272 IYRSYYIVATARFTD----AYLGGVALIRYPNSPLDP--------VGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSN 339 (545)
T ss_pred CcceEEEEEEecccC----CCcceEEEEEECCCCCCC--------CCCCCCCCcccccccccchhhhhhhcCCCCCCCCC
Confidence 3899999864332 235678999998764310 001222222222211111111 1221111122
Q ss_pred Ccc--------cceeEEEEeceeeeecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCCCCcccCC-CCCC
Q 016876 164 PTV--------IDENLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTD-FPPV 234 (381)
Q Consensus 164 p~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~ 234 (381)
|.. .++++.+.... ...+| ...|+|||++|..|++| ++.+++...++.+..+ ++..
T Consensus 340 p~~~~~~~~~~~~~~~~~~~~~-------------~~~~g-~~~~~iN~~s~~~p~~P-~l~~~~~~~~~~~~~~~~~~~ 404 (545)
T PLN02168 340 PQGSYHYGRINVTRTIILHNDV-------------MLSSG-KLRYTINGVSFVYPGTP-LKLVDHFQLNDTIIPGMFPVY 404 (545)
T ss_pred CcccccccccccceeEEecccc-------------cccCc-eEEEEECCCccCCCCCc-hhhhhhcccccccccCCCccC
Confidence 211 11222111100 00122 46899999999999884 5445444333333222 4444
Q ss_pred CCcccCCCCCCCCCcccCCCccceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCC
Q 016876 235 PPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLID 314 (381)
Q Consensus 235 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~ 314 (381)
+|.. ....++.++.++.|++|+|+|+|.. ...||||||||+|+||++|.|.|++.. ...||+.|
T Consensus 405 p~~~------------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g~g~~~~~~-~~~~Nl~n 468 (545)
T PLN02168 405 PSNK------------TPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYGFGAWSESK-KAGYNLVD 468 (545)
T ss_pred CCcC------------ccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECCCCCCCccc-cccCCCCC
Confidence 3310 0012467889999999999999963 458999999999999999999998643 45789999
Q ss_pred CCccceEEeCCCcEEEEEEEeCCceeEEEEecchhhHhccceEEEEEecCCC------cCCCCCCCCCCCCCC
Q 016876 315 PPRRNTIGTPPGGWVAVRFVAENPGIWLLHCHIDSHLTWGLAMAFLVENGVG------KLQTVQPPPLDLPRC 381 (381)
Q Consensus 315 p~~rDtv~v~~~~~~~i~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~------~~~~~~~~p~~~~~c 381 (381)
|++|||+.|+++||++|||++||||.|+|||||..|...||...+.|+++++ ..++++++|.++++|
T Consensus 469 P~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 469 AVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRC 541 (545)
T ss_pred CCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhccc
Confidence 9999999999999999999999999999999998888888888888864433 346678899999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=5.7e-56 Score=449.20 Aligned_cols=307 Identities=26% Similarity=0.467 Sum_probs=219.0
Q ss_pred CeeEEeeCCCEEEEEEEecCCCceeEEEEcCee-EEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCC-------Ccc
Q 016876 20 TVRFPVEAGETILLRIINSAMNQEHFFGVANHK-LTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQP-------PAR 91 (381)
Q Consensus 20 ~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~-m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~-------~g~ 91 (381)
.++++|++||+|||||||+|+.+.+.|+||||+ |+|||+||++++|++++.|.|++||||||||++++. +++
T Consensus 197 ~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~ 276 (538)
T TIGR03390 197 LPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQ 276 (538)
T ss_pred ceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCc
Confidence 478999999999999999999999999999999 999999999999999999999999999999999975 479
Q ss_pred ceeeeeeccccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCc-ccchhccccccccCCC-----CCCc
Q 016876 92 YYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDT-ATATAFTARIKSLHQV-----QVPT 165 (381)
Q Consensus 92 y~lr~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~l~~l~~~-----~~p~ 165 (381)
||||+.....+ +.....|||+|.++..+.. +..+..+..... .+.......+.++.+. +.+.
T Consensus 277 Y~ir~~~~~~~----~~~~~~aiL~Y~~~~~~~~--------~~~p~~~~~~~~~~~~~~~~~~l~pl~~~~~~~~~~~~ 344 (538)
T TIGR03390 277 YFIQFETRDRP----KVYRGYAVLRYRSDKASKL--------PSVPETPPLPLPNSTYDWLEYELEPLSEENNQDFPTLD 344 (538)
T ss_pred EEEEEeecCCC----CcceEEEEEEeCCCCCCCC--------CCCCCCCCCCccCcchhhhheeeEecCccccCCCCCCC
Confidence 99999764432 2345789999986543111 111111111000 0000111234444321 2234
Q ss_pred ccceeEEEEeceeeeecCCCCCCCccCCCCCeEEEEecceeeec--CCchhhHHHHHhCCCCcccCCCCCCCCcccCCCC
Q 016876 166 VIDENLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNISFVF--PRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYTG 243 (381)
Q Consensus 166 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~--~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~~ 243 (381)
.+++++.+.+++... .....+.|+|||++|.. +..|.|+..+.... +..++ |+..
T Consensus 345 ~~d~~~~l~~~~~~~------------~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~--------~~~~~--~~~~- 401 (538)
T TIGR03390 345 EVTRRVVIDAHQNVD------------PLNGRVAWLQNGLSWTESVRQTPYLVDIYENGL--------PATPN--YTAA- 401 (538)
T ss_pred cCceEEEEEcccccc------------ccCCeEEEEECCcccCCCCCCCchHHHHhcCCC--------CcCCC--cccc-
Confidence 567777666654310 01124689999999985 56644443322110 11111 1100
Q ss_pred CCCCCcccCCCccceEEeecCCEEEEEEeecCCc-----CCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCcc
Q 016876 244 NVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIV-----SVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRR 318 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~-----~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~r 318 (381)
... +.....+.++.++.|++|+|+|+|.... ....||||||||+|+||++|.|.|++......+|+.||++|
T Consensus 402 -~~~--~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rR 478 (538)
T TIGR03390 402 -LAN--YGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLR 478 (538)
T ss_pred -ccc--CCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCee
Confidence 000 0012235578899999999999996311 25689999999999999999999987554456888999999
Q ss_pred ceEEeC----------CCcEEEEEEEeCCceeEEEEecchhhHhccceEEEEEecC
Q 016876 319 NTIGTP----------PGGWVAVRFVAENPGIWLLHCHIDSHLTWGLAMAFLVENG 364 (381)
Q Consensus 319 Dtv~v~----------~~~~~~i~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~ 364 (381)
||+.|+ +++|++|||++||||.|+|||||.||+..||+++|.|...
T Consensus 479 DTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~ 534 (538)
T TIGR03390 479 DTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDA 534 (538)
T ss_pred cceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCCh
Confidence 999996 8899999999999999999999999999999999998544
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1e-43 Score=359.98 Aligned_cols=250 Identities=24% Similarity=0.353 Sum_probs=179.5
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeeee
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHA 98 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~~ 98 (381)
..+++.+++|++|||||||+|+.+.|+|+|+||+|+|||+||++|+|++++.|.|++||||||||+++ ..|.|+|++..
T Consensus 258 ~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~ 336 (587)
T TIGR01480 258 GNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQD 336 (587)
T ss_pred CCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEe
Confidence 45779999999999999999999999999999999999999999999999999999999999999987 45799999976
Q ss_pred ccccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCC--CCCCccc-----------------------------
Q 016876 99 YNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILP--GFNDTAT----------------------------- 147 (381)
Q Consensus 99 ~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~----------------------------- 147 (381)
... .....++|++.+...... +.++..+ ...+...
T Consensus 337 ~~~------~~~~~~~l~~~~~~~~~~--------p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (587)
T TIGR01480 337 SDR------TGYARGTLAVRLGLTAPV--------PALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSN 402 (587)
T ss_pred cCC------CceEEEEEecCCCCCCCC--------CCCCCccccChhhcccccccccccccccccCcccccCcccccccc
Confidence 432 235677888765321100 0000000 0000000
Q ss_pred -----------------------------------------------c--hhccccccccCCCCCCcccceeEEEEecee
Q 016876 148 -----------------------------------------------A--TAFTARIKSLHQVQVPTVIDENLFFTVGLG 178 (381)
Q Consensus 148 -----------------------------------------------~--~~~~~~l~~l~~~~~p~~~d~~~~~~~~~~ 178 (381)
. .....+|+.+.+...+..+++++.+.+.-
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g- 481 (587)
T TIGR01480 403 APMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTG- 481 (587)
T ss_pred ccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcC-
Confidence 0 00001111111111112334444333311
Q ss_pred eeecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCCCCcccCCCCCCCCcccCCCCCCCCCcccCCCccce
Q 016876 179 LINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYTGNVSRGLWQPRKRTKL 258 (381)
Q Consensus 179 ~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 258 (381)
+...+.|+|||..|.. ...
T Consensus 482 ---------------~m~~~~wtiNG~~~~~----------------------------------------------~~p 500 (587)
T TIGR01480 482 ---------------NMERFAWSFDGEAFGL----------------------------------------------KTP 500 (587)
T ss_pred ---------------CCceeEEEECCccCCC----------------------------------------------CCc
Confidence 2245678899865421 124
Q ss_pred EEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeCCc
Q 016876 259 YKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAENP 338 (381)
Q Consensus 259 ~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~~p 338 (381)
++++.|++|+|+|.|.. .+.||||||||.|+++..+ |. .+.++||+.|+||++++++|++++|
T Consensus 501 l~v~~Gervri~l~N~t---~~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ad~p 563 (587)
T TIGR01480 501 LRFNYGERLRVVLVNDT---MMAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVTADAL 563 (587)
T ss_pred eEecCCCEEEEEEECCC---CCCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEECCCC
Confidence 57899999999999965 5699999999999997643 32 2458899999999999999999999
Q ss_pred eeEEEEecchhhHhccceEEEEEe
Q 016876 339 GIWLLHCHIDSHLTWGLAMAFLVE 362 (381)
Q Consensus 339 G~w~~HCHi~~H~~~Gm~~~~~v~ 362 (381)
|.|+||||++.|++.||++.|.|.
T Consensus 564 G~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 564 GRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred eEEEEcCCCHHHHhCcCcEEEEeC
Confidence 999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1.7e-41 Score=341.27 Aligned_cols=269 Identities=17% Similarity=0.235 Sum_probs=168.5
Q ss_pred CcccCCCC-CCeeEEeeCCCEEEEEEEecCCCceeEEEE-cCeeEEEEeeCCCcc-CceEeeEEEeccCcEEEEEEEeCC
Q 016876 11 DVTMNCNA-ETVRFPVEAGETILLRIINSAMNQEHFFGV-ANHKLTVVGVDTSYT-KPFPTSVIMIAPGQTTNVLLTADQ 87 (381)
Q Consensus 11 ~~~~~~~~-~~~~~~v~~Gk~yRlRlINa~~~~~~~~~i-dgh~m~VIa~DG~~v-~P~~v~~l~l~~GeRydVlV~~~~ 87 (381)
|..+.+|+ ..+.+.++ +++|||||||+|+.+.|.|++ |+|+|+|||+||+++ +|+.++.|.|+|||||||+|++++
T Consensus 212 gd~~lVNG~~~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~ 290 (523)
T PRK10965 212 GDTLLTNGAIYPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSD 290 (523)
T ss_pred CCeEEECCcccceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCC
Confidence 34445566 56777775 579999999999999999998 899999999999997 899999999999999999999984
Q ss_pred CCccceeeeeeccccccCC-CCCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhccccccccCCCCCC-c
Q 016876 88 PPARYYMAAHAYNTANAAF-DNTTTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKSLHQVQVP-T 165 (381)
Q Consensus 88 ~~g~y~lr~~~~~~~~~~~-~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~p-~ 165 (381)
.++|++++..+....... .......++++...... ....+|. .++.+.+.+.+ .
T Consensus 291 -~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~P~---------------~l~~~~~~~~~~~ 346 (523)
T PRK10965 291 -GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLIS--------ASGTLPD---------------SLASLPALPSLEG 346 (523)
T ss_pred -CceEEEEEecccCcccccccCCCceeEEEEeccCcC--------CCCcCCh---------------hhccCCCCCcccc
Confidence 578999886443211000 01113455555543210 0001111 01111110000 0
Q ss_pred ccceeEEEEeceeee------ecCCCCCCCccC---------C-C--------C----Ce-E----EEEecceeeecCCc
Q 016876 166 VIDENLFFTVGLGLI------NCSNPNSPRCQG---------P-N--------G----TR-F----AASINNISFVFPRR 212 (381)
Q Consensus 166 ~~d~~~~~~~~~~~~------~~~~~~~~~~~~---------~-~--------g----~~-~----~~~iN~~~~~~~~~ 212 (381)
...+++.+.+..... .....+.....+ . . + .+ + .|+|||++|...
T Consensus 347 ~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~-- 424 (523)
T PRK10965 347 LTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDMN-- 424 (523)
T ss_pred cceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCCC--
Confidence 112333332210000 000000000000 0 0 0 00 0 136777665421
Q ss_pred hhhHHHHHhCCCCcccCCCCCCCCcccCCCCCCCCCcccCCCccceEEeecCCEEEEEEeecCCcCCCCCceeecCccEE
Q 016876 213 NSLMQAYIQGQPGIFTTDFPPVPPIIFDYTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFY 292 (381)
Q Consensus 213 ~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~ 292 (381)
...+.++.|++++|.|.|.+ ..+.|||||||++|+
T Consensus 425 -------------------------------------------~~~~~~~~G~~e~w~i~N~~--~~~~Hp~HlHg~~F~ 459 (523)
T PRK10965 425 -------------------------------------------KPMFAAKKGQYERWVISGVG--DMMLHPFHIHGTQFR 459 (523)
T ss_pred -------------------------------------------CcceecCCCCEEEEEEEeCC--CCCccCeEEeCcEEE
Confidence 12357899999999999965 135799999999999
Q ss_pred EEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe----CCceeEEEEecchhhHhccceEEEEE
Q 016876 293 VVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA----ENPGIWLLHCHIDSHLTWGLAMAFLV 361 (381)
Q Consensus 293 v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~----~~pG~w~~HCHi~~H~~~Gm~~~~~v 361 (381)
|++++.... ....+.|||||.|++ +.+.|++++ +++|.|||||||++|+|.|||+.|.|
T Consensus 460 Vl~~~g~~~---------~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 460 ILSENGKPP---------AAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred EEEecCCCC---------CccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence 999863221 122467999999987 556665554 46789999999999999999999987
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2.7e-41 Score=336.84 Aligned_cols=247 Identities=16% Similarity=0.181 Sum_probs=164.9
Q ss_pred CcccCCCC-CCeeEEeeCCCEEEEEEEecCCCceeEEEE-cCeeEEEEeeCCCcc-CceEeeEEEeccCcEEEEEEEeCC
Q 016876 11 DVTMNCNA-ETVRFPVEAGETILLRIINSAMNQEHFFGV-ANHKLTVVGVDTSYT-KPFPTSVIMIAPGQTTNVLLTADQ 87 (381)
Q Consensus 11 ~~~~~~~~-~~~~~~v~~Gk~yRlRlINa~~~~~~~~~i-dgh~m~VIa~DG~~v-~P~~v~~l~l~~GeRydVlV~~~~ 87 (381)
|..+.+|+ ..+.++|++| +|||||||+|+.+.|.|+| |+|+|+|||+||+++ +|+.++.|.|+|||||||+|++++
T Consensus 209 gd~~lvNG~~~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~ 287 (471)
T PRK10883 209 GDTLLVNGVQSPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN 287 (471)
T ss_pred CCeeEECCccCCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC
Confidence 34455666 6679999985 8999999999999999999 899999999997776 899999999999999999999974
Q ss_pred CCccceeeeeecccccc----CCCCC---ceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhccccccccCC
Q 016876 88 PPARYYMAAHAYNTANA----AFDNT---TTTAILEYKSAPFNGKKGKSRSSAPIFPILPGFNDTATATAFTARIKSLHQ 160 (381)
Q Consensus 88 ~~g~y~lr~~~~~~~~~----~~~~~---~~~ail~y~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~l~~ 160 (381)
.+.+.|++........ ..... ....+++...... .. ......| ..+.. +
T Consensus 288 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~p------------~~l~~--~ 343 (471)
T PRK10883 288 -GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL--------LP-LVTDNLP------------MRLLP--D 343 (471)
T ss_pred -CceEEEECCCccccccccccccCCccccccceeEEEEcccc--------cc-CCCCcCC------------hhhcC--C
Confidence 4566666532111000 00000 0111222221110 00 0000000 01111 0
Q ss_pred CCCCcccceeEEEEeceeeeecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCCCCcccCCCCCCCCcccC
Q 016876 161 VQVPTVIDENLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFD 240 (381)
Q Consensus 161 ~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~ 240 (381)
...+..+.+++.+.++. + .|.|||.+|.....
T Consensus 344 ~~~~~~~~~~~~~~l~~-----------------~---~~~INg~~~~~~~~---------------------------- 375 (471)
T PRK10883 344 EIMEGSPIRSREISLGD-----------------D---LPGINGALWDMNRI---------------------------- 375 (471)
T ss_pred CCCCCCCcceEEEEecC-----------------C---cCccCCcccCCCcc----------------------------
Confidence 01112233444443321 1 25699987753211
Q ss_pred CCCCCCCCcccCCCccceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccce
Q 016876 241 YTGNVSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNT 320 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDt 320 (381)
.+.++.|++++|.+.|. +.|||||||+.|||++++..... .....||||
T Consensus 376 -----------------~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G~~~~---------~~~~gwkDT 424 (471)
T PRK10883 376 -----------------DVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNGAMPF---------PEDRGWKDT 424 (471)
T ss_pred -----------------eeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecCCCCC---------ccccCcCcE
Confidence 24678999999999883 47999999999999998632111 112469999
Q ss_pred EEeCCCcEEEEEEEeCCce----eEEEEecchhhHhccceEEEEEec
Q 016876 321 IGTPPGGWVAVRFVAENPG----IWLLHCHIDSHLTWGLAMAFLVEN 363 (381)
Q Consensus 321 v~v~~~~~~~i~f~~~~pG----~w~~HCHi~~H~~~Gm~~~~~v~~ 363 (381)
|.|+ +.+.|+++++++| .|||||||++|+|.|||+.|.|.+
T Consensus 425 V~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 425 VWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred EEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 9995 4699999999887 899999999999999999999954
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.8e-34 Score=285.42 Aligned_cols=263 Identities=23% Similarity=0.315 Sum_probs=166.9
Q ss_pred cccCCcccCCCCCCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeC
Q 016876 7 AKVSDVTMNCNAETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTAD 86 (381)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~ 86 (381)
+...|..-..++....+...++.+|||||+|+++.+.+.+.+.+++|+||++||.+++|..++.|.|+|||||||+|+++
T Consensus 185 ~~~~g~~~~vnG~~~p~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~ 264 (451)
T COG2132 185 GGFPGDTLLVNGAILPFKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMN 264 (451)
T ss_pred cCCCCCeEEECCCccceeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcC
Confidence 34444443344433445555556799999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccceeeeeeccccccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCCC--CCCCCcccchhccccccccCCCCCC
Q 016876 87 QPPARYYMAAHAYNTANAAFDNTTTTAILEYKSAPFNGKKGKSRSSAPIFPIL--PGFNDTATATAFTARIKSLHQVQVP 164 (381)
Q Consensus 87 ~~~g~y~lr~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~l~~l~~~~~p 164 (381)
+ .+.+.+.+.... . .....+......... .+....... ....+. ........++.....+-+
T Consensus 265 ~-~~~~~l~~~~~~-~-----~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~ 328 (451)
T COG2132 265 D-GGAVTLTALGED-M-----PDTLKGFRAPNPILT--------PSYPVLNGRVGAPTGDM-ADHAPVGLLVTILVEPGP 328 (451)
T ss_pred C-CCeEEEEecccc-C-----Cceeeeeeccccccc--------cccccccccccCCCcch-hhccccccchhhcCCCcc
Confidence 4 677888876411 0 011111211111110 000000000 000000 000000000000000000
Q ss_pred cccceeEEEEeceeeeecCCCCCCCccCCCCCeEEEEecceeeecCCchhhHHHHHhCCCCcccCCCCCCCCcccCCCCC
Q 016876 165 TVIDENLFFTVGLGLINCSNPNSPRCQGPNGTRFAASINNISFVFPRRNSLMQAYIQGQPGIFTTDFPPVPPIIFDYTGN 244 (381)
Q Consensus 165 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iN~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 244 (381)
..+....+.. ....+.|.+|+..|..
T Consensus 329 -~~~~~~~l~~------------------~~~~~~~~~n~~~~~~----------------------------------- 354 (451)
T COG2132 329 -NRDTDFHLIG------------------GIGGYVWAINGKAFDD----------------------------------- 354 (451)
T ss_pred -cccccchhhc------------------ccccccccccCccCCC-----------------------------------
Confidence 0000000000 0011245566654421
Q ss_pred CCCCcccCCCccceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeC
Q 016876 245 VSRGLWQPRKRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTP 324 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~ 324 (381)
....+.++.|++++|+|.|.. .+.||||+||+.|+|++.+.. .--..+.||||+.+.
T Consensus 355 ----------~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~~~----------~~~~~~~~kDTv~v~ 411 (451)
T COG2132 355 ----------NRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGDAP----------APGAAPGWKDTVLVA 411 (451)
T ss_pred ----------CcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecCCC----------cccccCccceEEEeC
Confidence 123567899999999999964 479999999999999998611 112357899999999
Q ss_pred CCcEEEEEEEeCCceeEEEEecchhhHhccceEEEEEe
Q 016876 325 PGGWVAVRFVAENPGIWLLHCHIDSHLTWGLAMAFLVE 362 (381)
Q Consensus 325 ~~~~~~i~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~ 362 (381)
+++.++++|.+++||.|+||||+++|++.|||..+.|.
T Consensus 412 ~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 412 PGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred CCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 99999999999999999999999999999999999885
No 17
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=2.1e-29 Score=212.19 Aligned_cols=106 Identities=46% Similarity=0.875 Sum_probs=94.1
Q ss_pred CccceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEE
Q 016876 254 KRTKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRF 333 (381)
Q Consensus 254 ~~~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f 333 (381)
.++..+.++.|++|+|+|.|.+ ...|||||||+.|+|++.+.+.++.. ....+++.+|.||||+.|+++++++|||
T Consensus 31 ~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~~ 106 (138)
T PF07731_consen 31 GNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIRF 106 (138)
T ss_dssp STTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEEE
T ss_pred CCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEEE
Confidence 4677899999999999999965 55999999999999999987665433 3456788899999999999999999999
Q ss_pred EeCCceeEEEEecchhhHhccceEEEEEec
Q 016876 334 VAENPGIWLLHCHIDSHLTWGLAMAFLVEN 363 (381)
Q Consensus 334 ~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~ 363 (381)
++++||.|+||||+++|++.|||+.|.|.+
T Consensus 107 ~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 107 RADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 999999999999999999999999999864
No 18
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.93 E-value=1.9e-25 Score=192.48 Aligned_cols=102 Identities=33% Similarity=0.552 Sum_probs=88.1
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeeee
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHA 98 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~~ 98 (381)
..+.++|++|++|||||||+++.+.+.|+|+||+|+|||+||++++|..++.|.|++||||||+|++++++|+|||++..
T Consensus 58 ~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~ 137 (159)
T PF00394_consen 58 EPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASY 137 (159)
T ss_dssp TSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEE
T ss_pred ccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999999999999878999999963
Q ss_pred ccccccCCCCCceEEEEEecCC
Q 016876 99 YNTANAAFDNTTTTAILEYKSA 120 (381)
Q Consensus 99 ~~~~~~~~~~~~~~ail~y~~~ 120 (381)
...+..........|||+|.++
T Consensus 138 ~~~~~~~~~~~~~~aiL~Y~~~ 159 (159)
T PF00394_consen 138 QHDSINDPQNGNALAILRYDGA 159 (159)
T ss_dssp SSSSSHSHGGGTTEEEEEETTS
T ss_pred ccCCCccCCCcEEEEEEEECCC
Confidence 2222122235678999999863
No 19
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.59 E-value=2.6e-15 Score=142.70 Aligned_cols=96 Identities=19% Similarity=0.151 Sum_probs=83.2
Q ss_pred eeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCce--EeeEEEeccCcEEEEEEEeCCCCccceeeeee
Q 016876 21 VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPF--PTSVIMIAPGQTTNVLLTADQPPARYYMAAHA 98 (381)
Q Consensus 21 ~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~--~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~~ 98 (381)
+.+++++|+++||||||+++.+.+.|++.+|.+++|+.||.++.|. .++.+.|+|||||||+|++++ +|.|++++..
T Consensus 202 ~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~ 280 (311)
T TIGR02376 202 GDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHN 280 (311)
T ss_pred CCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcH
Confidence 4679999999999999999999999999999999999999999764 489999999999999999995 7999999976
Q ss_pred ccccccCCCCCceEEEEEecCCC
Q 016876 99 YNTANAAFDNTTTTAILEYKSAP 121 (381)
Q Consensus 99 ~~~~~~~~~~~~~~ail~y~~~~ 121 (381)
+.... +....|+|.|.+..
T Consensus 281 ~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 281 LIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred HHHHH----hCCCEEEEEECCCC
Confidence 54321 23478999998654
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.55 E-value=2.3e-12 Score=122.55 Aligned_cols=91 Identities=23% Similarity=0.158 Sum_probs=76.1
Q ss_pred EeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCC-ccceEEeCCCcEEEEEEEeCCc
Q 016876 260 KLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPP-RRNTIGTPPGGWVAVRFVAENP 338 (381)
Q Consensus 260 ~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~-~rDtv~v~~~~~~~i~f~~~~p 338 (381)
.++.|++++|+|.|.+ ....+.||++|++|.++...++.. ..|. ..|++.|.||+...|.++++.|
T Consensus 205 ~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~DG~~~-----------~~~~~~~~~~~i~PG~R~dv~v~~~~p 271 (311)
T TIGR02376 205 ALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVTGKFA-----------NPPNRDVETWFIPGGSAAAALYTFEQP 271 (311)
T ss_pred ccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEECCccc-----------CCCCCCcceEEECCCceEEEEEEeCCC
Confidence 5688999999999986 345689999999999998843221 1122 3689999999999999999999
Q ss_pred eeEEEEecchhhH-hccceEEEEEec
Q 016876 339 GIWLLHCHIDSHL-TWGLAMAFLVEN 363 (381)
Q Consensus 339 G~w~~HCHi~~H~-~~Gm~~~~~v~~ 363 (381)
|.|.+|||...|. ..|+++.+.|+.
T Consensus 272 G~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 272 GVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred eEEEEECcHHHHHHhCCCEEEEEECC
Confidence 9999999999998 789999999853
No 21
>PLN02604 oxidoreductase
Probab=99.13 E-value=7.2e-10 Score=113.84 Aligned_cols=91 Identities=22% Similarity=0.310 Sum_probs=71.1
Q ss_pred eEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeCC
Q 016876 258 LYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAEN 337 (381)
Q Consensus 258 ~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~~ 337 (381)
+++++.|+++++.+.|.. ....|++|+||... .+.. -.+. ........|.||++.+.+|+++.
T Consensus 56 ~i~~~~Gd~v~v~v~N~l--~~~~~~iH~HG~~~--~~~~--~~DG-----------~~~~tq~~i~pg~s~~y~f~~~~ 118 (566)
T PLN02604 56 TILAQQGDTVIVELKNSL--LTENVAIHWHGIRQ--IGTP--WFDG-----------TEGVTQCPILPGETFTYEFVVDR 118 (566)
T ss_pred cEEEECCCEEEEEEEeCC--CCCCCCEEeCCCCC--CCCc--cccC-----------CCccccCccCCCCeEEEEEEcCC
Confidence 578999999999999963 24579999999952 1110 0000 01123457899999999999999
Q ss_pred ceeEEEEecchhhHhccceEEEEEecCC
Q 016876 338 PGIWLLHCHIDSHLTWGLAMAFLVENGV 365 (381)
Q Consensus 338 pG~w~~HCHi~~H~~~Gm~~~~~v~~~~ 365 (381)
+|.|.||||...|.+.||++.|.|++.+
T Consensus 119 ~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 119 PGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred CEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 9999999999999999999999998654
No 22
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.95 E-value=2.2e-09 Score=87.36 Aligned_cols=90 Identities=22% Similarity=0.269 Sum_probs=68.7
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE 336 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~ 336 (381)
++++++.|+.|++.+.|.. ...+.+|+||....--...+|... .. .-.|.||+..+.+|++.
T Consensus 26 PtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~~~~~~DG~~~--------------~~-~~~i~pG~~~~Y~~~~~ 87 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQPPSPWMDGVPG--------------VT-QCPIAPGESFTYEFTAN 87 (117)
T ss_dssp EEEEEETTEEEEEEEEEES---SSGBSEEEETSBSTTGGGGSGGTT--------------TS-GSSBSTTEEEEEEEEES
T ss_pred CEEEEEcCCeeEEEEEecc---ccccccccceeeeeeeeecCCccc--------------cc-ceeEEeecceeeeEeee
Confidence 5899999999999999964 567999999976321100112110 00 12478899999999999
Q ss_pred C-ceeEEEEecchhhHhccceEEEEEecC
Q 016876 337 N-PGIWLLHCHIDSHLTWGLAMAFLVENG 364 (381)
Q Consensus 337 ~-pG~w~~HCHi~~H~~~Gm~~~~~v~~~ 364 (381)
. +|.|.||||...|...||.+.|.|++.
T Consensus 88 ~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 88 QQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 8 999999999999988999999999764
No 23
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.69 E-value=7.5e-08 Score=98.66 Aligned_cols=90 Identities=20% Similarity=0.338 Sum_probs=70.6
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcC--CCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEE
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSG--LGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFV 334 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~--~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~ 334 (381)
+.++++.|+++++.+.|.. ....+.+|+||.+. .+.. .|. | -.....|+||++.+.+|+
T Consensus 32 P~i~~~~Gd~v~v~v~N~l--~~~~t~iHwHGl~~--~~~~~~DG~--------------~-~vtq~~I~PG~s~~y~f~ 92 (541)
T TIGR03388 32 PTIRAQAGDTIVVELTNKL--HTEGVVIHWHGIRQ--IGTPWADGT--------------A-GVTQCAINPGETFIYNFV 92 (541)
T ss_pred CeEEEEcCCEEEEEEEECC--CCCCccEEecCcCC--cCCcccCCC--------------C-ccccCCcCCCCEEEEEEE
Confidence 4789999999999999963 24579999999952 1110 110 0 112336789999999999
Q ss_pred eCCceeEEEEecchhhHhccceEEEEEecCC
Q 016876 335 AENPGIWLLHCHIDSHLTWGLAMAFLVENGV 365 (381)
Q Consensus 335 ~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~ 365 (381)
++.+|.|.||||...|...||.+.|.|++..
T Consensus 93 ~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 93 VDRPGTYFYHGHYGMQRSAGLYGSLIVDVPD 123 (541)
T ss_pred cCCCEEEEEEecchHHhhccceEEEEEecCC
Confidence 9999999999999999999999999998664
No 24
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.60 E-value=4.9e-06 Score=85.43 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=64.1
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE 336 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~ 336 (381)
..+.++.|++++|+|.|.+ ....+.||++||.|.|++.. |. +..|...|++.|.+|++..|.++++
T Consensus 187 ~~i~v~~G~~~RlRlINa~--~~~~~~~~idgH~~~VIa~D-G~-----------~~~P~~~~~l~i~~GqRydVlv~a~ 252 (539)
T TIGR03389 187 FKLTVEPGKTYLLRIINAA--LNDELFFAIANHTLTVVEVD-AT-----------YTKPFKTKTIVIGPGQTTNVLLTAD 252 (539)
T ss_pred eEEEECCCCEEEEEEEecc--CCceEEEEECCCeEEEEEeC-Cc-----------ccCceEeCeEEecCCCEEEEEEECC
Confidence 3688999999999999986 24568899999999999985 32 2357788999999999999999998
Q ss_pred C-ceeEEEEecc
Q 016876 337 N-PGIWLLHCHI 347 (381)
Q Consensus 337 ~-pG~w~~HCHi 347 (381)
. +|.|.++-+.
T Consensus 253 ~~~g~y~i~~~~ 264 (539)
T TIGR03389 253 QSPGRYFMAARP 264 (539)
T ss_pred CCCceEEEEEec
Confidence 4 8988877654
No 25
>PRK10883 FtsI repressor; Provisional
Probab=98.53 E-value=1.2e-05 Score=80.94 Aligned_cols=74 Identities=12% Similarity=0.172 Sum_probs=58.7
Q ss_pred eEEeecCCEEEEEEeecCCcCCCCCceee-cCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC
Q 016876 258 LYKLKFGSRVQIVFQDTSIVSVEDHPMHL-HGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE 336 (381)
Q Consensus 258 ~~~~~~g~~v~~~i~n~~~~~~~~Hp~Hl-HG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~ 336 (381)
.+.++. .+++|+|.|.+. ....-+++ +||.|+|++...|.+ ..|...|.+.|.||+.+.|.++++
T Consensus 221 ~~~v~~-~~~RlRliNas~--~~~~~l~l~d~~~~~vIa~DGg~~-----------~~P~~~~~l~l~pGeR~dvlVd~~ 286 (471)
T PRK10883 221 YVEVSR-GWVRLRLLNASN--ARRYQLQMSDGRPLHVIAGDQGFL-----------PAPVSVKQLSLAPGERREILVDMS 286 (471)
T ss_pred eEEecC-CEEEEEEEEccC--CceEEEEEcCCCeEEEEEeCCCcc-----------cCCcEeCeEEECCCCeEEEEEECC
Confidence 355665 478999999863 34567787 899999999875542 356677999999999999999998
Q ss_pred CceeEEEEe
Q 016876 337 NPGIWLLHC 345 (381)
Q Consensus 337 ~pG~w~~HC 345 (381)
..+.+.+++
T Consensus 287 ~~~~~~l~~ 295 (471)
T PRK10883 287 NGDEVSITA 295 (471)
T ss_pred CCceEEEEC
Confidence 877888887
No 26
>PLN02835 oxidoreductase
Probab=98.49 E-value=1.4e-05 Score=81.76 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=59.8
Q ss_pred eEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC-
Q 016876 258 LYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE- 336 (381)
Q Consensus 258 ~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~- 336 (381)
.+.++.|++++|+|.|.+ ....+-||+.||.|.|++..... ..|...|.+.|.+|++..|.++++
T Consensus 203 ~~~v~~G~~yRlRliNa~--~~~~~~f~i~gH~~~VI~~DG~~------------v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 203 TFSGDQGKTYMFRISNVG--LSTSLNFRIQGHTMKLVEVEGSH------------TIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred eEEECCCCEEEEEEEEcC--CCccEEEEECCCEEEEEEECCcc------------CCCceeeEEEECcCceEEEEEEcCC
Confidence 467889999999999987 34579999999999999875321 235578999999999999999987
Q ss_pred CceeEEEEe
Q 016876 337 NPGIWLLHC 345 (381)
Q Consensus 337 ~pG~w~~HC 345 (381)
.+|.|-++-
T Consensus 269 ~~g~y~i~a 277 (539)
T PLN02835 269 SPKDYYIVA 277 (539)
T ss_pred CCCcEEEEE
Confidence 468666553
No 27
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.48 E-value=1e-06 Score=75.77 Aligned_cols=94 Identities=20% Similarity=0.323 Sum_probs=77.5
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
...+.++.|++++|+|.|.+ ....+.|+++||.|+|++..+.. ..|...|++.|.+|+++.|.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~--~~~~~~~~i~gh~~~Via~DG~~------------v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAG--ASTSFNFSIDGHPMTVIAADGVP------------VEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEES--SS-BEEEEETTBCEEEEEETTEE------------EEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEecc--CCeeEEEEeeccceeEeeecccc------------ccccccceEEeeCCeEEEEEEEe
Confidence 45889999999999999986 34579999999999999985221 23778899999999999999999
Q ss_pred CC-ceeEEEEe----cchhhHhccceEEEEEec
Q 016876 336 EN-PGIWLLHC----HIDSHLTWGLAMAFLVEN 363 (381)
Q Consensus 336 ~~-pG~w~~HC----Hi~~H~~~Gm~~~~~v~~ 363 (381)
+. +|.|.+++ +...+...|+...+++..
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 97 99999999 667778888888777643
No 28
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.42 E-value=1.3e-06 Score=73.86 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=58.2
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCcc--EEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCC---C--cEE
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHE--FYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPP---G--GWV 329 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~--f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~---~--~~~ 329 (381)
+.++++.|++|++++.|.+ ....|.|-||.+. +.....-.|. |.....-.+++ | .+.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~--~~~~H~~~I~~~g~~~~~~p~mdG~--------------~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTD--TDSGHNFDISKRGPPYPYMPGMDGL--------------GFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CEEEEcCCCEEEEEEEeCC--CCccccEEeecCCCccccccccCCC--------------CccccCcccCCCCCCcccee
Confidence 4789999999999999974 2345666555322 1110000010 11111112222 2 246
Q ss_pred EEEEEeCCceeEEEEecchhhHhccceEEEEEe
Q 016876 330 AVRFVAENPGIWLLHCHIDSHLTWGLAMAFLVE 362 (381)
Q Consensus 330 ~i~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~ 362 (381)
.+.|+++.+|.+-||||+..|.+.||.+.+.|+
T Consensus 116 ~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 788888899999999999999999999999873
No 29
>PLN02354 copper ion binding / oxidoreductase
Probab=98.38 E-value=3.7e-05 Score=78.80 Aligned_cols=76 Identities=13% Similarity=0.229 Sum_probs=62.5
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE 336 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~ 336 (381)
..+.++.|++++|+|.|.+. ....-||+.||.|.|++..... ..|...|++.|.+|++..|.++++
T Consensus 207 ~~~~v~~Gk~yRlRiINa~~--~~~~~f~IdgH~~tVIa~DG~~------------v~p~~~~~l~i~~GqRydVlv~a~ 272 (552)
T PLN02354 207 PLFTMKPGKTYRYRICNVGL--KSSLNFRIQGHKMKLVEMEGSH------------VLQNDYDSLDVHVGQCFSVLVTAN 272 (552)
T ss_pred eEEEECCCCEEEEEEEecCC--CceEEEEECCceEEEEEeCCcc------------cCCcceeEEEEccCceEEEEEECC
Confidence 46789999999999999873 4578999999999999875322 235567999999999999999998
Q ss_pred -CceeEEEEec
Q 016876 337 -NPGIWLLHCH 346 (381)
Q Consensus 337 -~pG~w~~HCH 346 (381)
.+|.|-+.-.
T Consensus 273 ~~~g~Y~i~a~ 283 (552)
T PLN02354 273 QAPKDYYMVAS 283 (552)
T ss_pred CCCCcEEEEEe
Confidence 4787777655
No 30
>PLN02191 L-ascorbate oxidase
Probab=98.34 E-value=2e-06 Score=88.53 Aligned_cols=91 Identities=19% Similarity=0.241 Sum_probs=69.7
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE 336 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~ 336 (381)
++++++.|+++++.+.|.- ....+.+|+||.+..-.....|.. ---...|+||++.+.+|+++
T Consensus 54 P~i~~~~Gd~v~v~v~N~l--~~~~tsiHwHGl~~~~~~~~DGv~---------------gvtq~pI~PG~s~~Y~f~~~ 116 (574)
T PLN02191 54 PTIDAVAGDTIVVHLTNKL--TTEGLVIHWHGIRQKGSPWADGAA---------------GVTQCAINPGETFTYKFTVE 116 (574)
T ss_pred CeEEEEcCCEEEEEEEECC--CCCCccEECCCCCCCCCccccCCC---------------ccccCCcCCCCeEEEEEECC
Confidence 5789999999999999963 345799999999621100001110 00013578999999999999
Q ss_pred CceeEEEEecchhhHhccceEEEEEecC
Q 016876 337 NPGIWLLHCHIDSHLTWGLAMAFLVENG 364 (381)
Q Consensus 337 ~pG~w~~HCHi~~H~~~Gm~~~~~v~~~ 364 (381)
.+|.|.||||...+...||.+.+.|++.
T Consensus 117 ~~GT~wYHsH~~~q~~~Gl~G~liV~~~ 144 (574)
T PLN02191 117 KPGTHFYHGHYGMQRSAGLYGSLIVDVA 144 (574)
T ss_pred CCeEEEEeeCcHHHHhCCCEEEEEEccC
Confidence 9999999999999999999999999743
No 31
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=98.22 E-value=1.9e-05 Score=81.34 Aligned_cols=88 Identities=24% Similarity=0.337 Sum_probs=69.3
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE 336 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~ 336 (381)
+.++++.|+.+++.+.|.- ...+.+|+||...- ..-.|. |. .-.-.|+||++.+.+|.+.
T Consensus 76 P~ir~~~Gd~v~v~v~N~l---~~~tsiHwHGl~~~--~~~DGv--------------P~-vt~~~I~PG~s~~Y~f~~~ 135 (587)
T TIGR01480 76 PLLRWREGDTVRLRVTNTL---PEDTSIHWHGILLP--FQMDGV--------------PG-VSFAGIAPGETFTYRFPVR 135 (587)
T ss_pred ceEEEECCCEEEEEEEcCC---CCCceEEcCCCcCC--ccccCC--------------Cc-ccccccCCCCeEEEEEECC
Confidence 4689999999999999963 56899999998621 111121 10 0012578999999999999
Q ss_pred CceeEEEEecchhhHhccceEEEEEecC
Q 016876 337 NPGIWLLHCHIDSHLTWGLAMAFLVENG 364 (381)
Q Consensus 337 ~pG~w~~HCHi~~H~~~Gm~~~~~v~~~ 364 (381)
.+|.|.||||...++..||.+.|.|++.
T Consensus 136 ~~GTyWYHsH~~~q~~~GL~G~lIV~~~ 163 (587)
T TIGR01480 136 QSGTYWYHSHSGFQEQAGLYGPLIIDPA 163 (587)
T ss_pred CCeeEEEecCchhHhhccceEEEEECCC
Confidence 9999999999999999999999999754
No 32
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.12 E-value=0.00026 Score=72.68 Aligned_cols=68 Identities=13% Similarity=0.242 Sum_probs=57.4
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCcc-EEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHE-FYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~-f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
..+.++.|++++|+|.|.+. ....-|++.||. |+|++.... +..|...|++.|.+|++..|.+++
T Consensus 198 ~~~~v~~G~~yRlRlINa~~--~~~~~~~idgH~~~~VIa~DG~------------~~~P~~v~~l~l~~GqRydVlv~~ 263 (538)
T TIGR03390 198 PVIDVEPGKTYRLRFIGATA--LSLISLGIEDHENLTIIEADGS------------YTKPAKIDHLQLGGGQRYSVLFKA 263 (538)
T ss_pred eEEEECCCCEEEEEEEccCC--ceEEEEEECCCCeEEEEEeCCC------------CCCceEeCeEEEccCCEEEEEEEC
Confidence 46889999999999999872 446889999999 999998532 245778899999999999999999
Q ss_pred CCc
Q 016876 336 ENP 338 (381)
Q Consensus 336 ~~p 338 (381)
+.+
T Consensus 264 ~~~ 266 (538)
T TIGR03390 264 KTE 266 (538)
T ss_pred CCc
Confidence 853
No 33
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.01 E-value=8.4e-05 Score=62.05 Aligned_cols=79 Identities=20% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCcc-----------CceEeeEEEeccCcEEEEEEEeCC
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT-----------KPFPTSVIMIAPGQTTNVLLTADQ 87 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v-----------~P~~v~~l~l~~GeRydVlV~~~~ 87 (381)
....+.++.|++++|+|+|.+.. ...|.+.||+|.|++.++... .|...|++.+.+|++..+.++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~- 109 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD- 109 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-
Confidence 56799999999999999997776 677999999999999999884 68899999999999999999998
Q ss_pred CCccceeeeeec
Q 016876 88 PPARYYMAAHAY 99 (381)
Q Consensus 88 ~~g~y~lr~~~~ 99 (381)
.+|.|.+.....
T Consensus 110 ~~G~w~~HCHi~ 121 (138)
T PF07731_consen 110 NPGPWLFHCHIL 121 (138)
T ss_dssp STEEEEEEESSH
T ss_pred cceEEEEEEchH
Confidence 889999998764
No 34
>PLN02168 copper ion binding / pectinesterase
Probab=98.01 E-value=2.9e-05 Score=79.33 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=69.9
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe-
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA- 335 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~- 335 (381)
+.++++.|+++++.+.|.- .....+|+||....--....|.. - -...|+||++.+.+|++
T Consensus 57 P~I~~~~GD~v~V~v~N~L---~~~ttiHWHGl~~~~~~~~DGv~---------------g-tQcpI~PG~sftY~F~~~ 117 (545)
T PLN02168 57 PLLNATANDVINVNIFNNL---TEPFLMTWNGLQLRKNSWQDGVR---------------G-TNCPILPGTNWTYRFQVK 117 (545)
T ss_pred CcEEEECCCEEEEEEEeCC---CCCccEeeCCccCCCCCCcCCCC---------------C-CcCCCCCCCcEEEEEEeC
Confidence 4789999999999999963 45789999997522111112210 0 12368999999999998
Q ss_pred CCceeEEEEecchhhHhccceEEEEEecCC
Q 016876 336 ENPGIWLLHCHIDSHLTWGLAMAFLVENGV 365 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~ 365 (381)
+.+|.+-||||...+...||.+.+.|++.+
T Consensus 118 ~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~ 147 (545)
T PLN02168 118 DQIGSYFYFPSLLLQKAAGGYGAIRIYNPE 147 (545)
T ss_pred CCCceEEEecChhhhhhCcceeEEEEcCCc
Confidence 589999999999999999999999997654
No 35
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.98 E-value=3.6e-05 Score=60.65 Aligned_cols=82 Identities=20% Similarity=0.279 Sum_probs=57.3
Q ss_pred eEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeCC
Q 016876 258 LYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAEN 337 (381)
Q Consensus 258 ~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~~ 337 (381)
.+.++.|++|+|+ |.+ ...|-+.++...+..-.. . .......+.+.+.||.+..+.|..
T Consensus 18 ~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~~pG~t~~~tF~~-- 76 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAGVK-----E---------LAKSLSHKDLLNSPGESYEVTFST-- 76 (99)
T ss_pred EEEECCCCEEEEE--ECC---CCCceEEECCCCCccchh-----h---------hcccccccccccCCCCEEEEEeCC--
Confidence 5789999999887 532 346777765432211100 0 000112356778899999887776
Q ss_pred ceeEEEEecchhhHhccceEEEEEe
Q 016876 338 PGIWLLHCHIDSHLTWGLAMAFLVE 362 (381)
Q Consensus 338 pG~w~~HCHi~~H~~~Gm~~~~~v~ 362 (381)
+|.|.|+|. -|.+.||.+.+.|+
T Consensus 77 ~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999873
No 36
>PRK10965 multicopper oxidase; Provisional
Probab=97.93 E-value=5.8e-05 Score=76.96 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=72.9
Q ss_pred CcccCCcccCCCCCCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCc---eEeeEEEeccCcEEEEE
Q 016876 6 NAKVSDVTMNCNAETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKP---FPTSVIMIAPGQTTNVL 82 (381)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P---~~v~~l~l~~GeRydVl 82 (381)
.|.+||..|+. ..+.++++.|++.+|+|+|.+.....-|.|.|++|+|++.||.+..+ ..-|++.+.+ ++..++
T Consensus 413 ~~~ING~~~~~--~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~ 489 (523)
T PRK10965 413 ANKINGKAFDM--NKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVL 489 (523)
T ss_pred cccCCCeECCC--CCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEE
Confidence 35777777654 34568899999999999999975567899999999999999998753 3569999966 899999
Q ss_pred EEeCCC---Cccceeeeeec
Q 016876 83 LTADQP---PARYYMAAHAY 99 (381)
Q Consensus 83 V~~~~~---~g~y~lr~~~~ 99 (381)
|+++.. .|.|....+..
T Consensus 490 ~~f~~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 490 VKFDHDAPKEHAYMAHCHLL 509 (523)
T ss_pred EEecCCCCCCCCEEEEeCch
Confidence 999743 46787877653
No 37
>PLN02792 oxidoreductase
Probab=97.92 E-value=3.6e-05 Score=78.61 Aligned_cols=90 Identities=12% Similarity=0.045 Sum_probs=69.9
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe-
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA- 335 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~- 335 (381)
+.++++.|+++++.+.|.- .....+|+||....--...+|. +. -...|+||++.+-+|++
T Consensus 47 P~I~~~~GD~v~V~v~N~L---~~~ttiHWHGl~q~~~~~~DGv--------------~~--tqcPI~PG~sftY~F~~~ 107 (536)
T PLN02792 47 PEIRSLTNDNLVINVHNDL---DEPFLLSWNGVHMRKNSYQDGV--------------YG--TTCPIPPGKNYTYDFQVK 107 (536)
T ss_pred CcEEEECCCEEEEEEEeCC---CCCcCEeCCCcccCCCCccCCC--------------CC--CcCccCCCCcEEEEEEeC
Confidence 4789999999999999963 4678999999863221111221 01 13468999999999998
Q ss_pred CCceeEEEEecchhhHhccceEEEEEecCC
Q 016876 336 ENPGIWLLHCHIDSHLTWGLAMAFLVENGV 365 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~ 365 (381)
+.+|.+-||||...+...||.+.+.|.+.+
T Consensus 108 ~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~ 137 (536)
T PLN02792 108 DQVGSYFYFPSLAVQKAAGGYGSLRIYSLP 137 (536)
T ss_pred CCccceEEecCcchhhhcccccceEEeCCc
Confidence 589999999999999999999999886543
No 38
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=97.87 E-value=5e-05 Score=78.19 Aligned_cols=90 Identities=13% Similarity=0.059 Sum_probs=71.4
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe-
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA- 335 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~- 335 (381)
+.++++.|+++++.+.|.. +....+|+||.+..--...+|. | - ....|+||++.+.+|++
T Consensus 60 PtI~~~~GD~v~V~V~N~L---~~~ttIHWHGl~q~~t~w~DGv--------------~-~-TQcPI~PG~sftY~F~~~ 120 (596)
T PLN00044 60 PALNVTTNWNLVVNVRNAL---DEPLLLTWHGVQQRKSAWQDGV--------------G-G-TNCAIPAGWNWTYQFQVK 120 (596)
T ss_pred CcEEEECCCEEEEEEEeCC---CCCccEEECCccCCCCccccCC--------------C-C-CcCCcCCCCcEEEEEEeC
Confidence 4789999999999999973 4678999999764322222221 1 1 23468999999999999
Q ss_pred CCceeEEEEecchhhHhccceEEEEEecCC
Q 016876 336 ENPGIWLLHCHIDSHLTWGLAMAFLVENGV 365 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~ 365 (381)
+.+|.+-||+|..++...||.+.|.|.+.+
T Consensus 121 dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~ 150 (596)
T PLN00044 121 DQVGSFFYAPSTALHRAAGGYGAITINNRD 150 (596)
T ss_pred CCCceeEeeccchhhhhCcCeeEEEEcCcc
Confidence 589999999999999999999999997654
No 39
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.71 E-value=0.00033 Score=55.13 Aligned_cols=83 Identities=25% Similarity=0.415 Sum_probs=55.1
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE 336 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~ 336 (381)
..+.++.|++|.|+..+ ...|.+++=- .+ +......... +..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~-----~~~Hnv~~~~-------~~---~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNND-----SMPHNVVFVA-------DG---MPAGADSDYV----PPGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEES-----SSSBEEEEET-------TS---SHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECC-----CCCceEEEec-------cc---cccccccccc----CccccceecCCCCEEEEEeC--
Confidence 36899999999987653 2345544322 11 1000000000 11115677889999888888
Q ss_pred CceeEEEEecchhhHhccceEEEEEe
Q 016876 337 NPGIWLLHCHIDSHLTWGLAMAFLVE 362 (381)
Q Consensus 337 ~pG~w~~HCHi~~H~~~Gm~~~~~v~ 362 (381)
.+|.|.|+|- . |...||.+.+.|+
T Consensus 76 ~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999999 5 9999999999984
No 40
>PLN02991 oxidoreductase
Probab=97.70 E-value=0.00017 Score=73.68 Aligned_cols=90 Identities=13% Similarity=0.008 Sum_probs=69.6
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe-
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA- 335 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~- 335 (381)
+.++++.|+++++.+.|.- +..-.+|+||....--...+|. |. -.-.|+||++.+-+|++
T Consensus 59 P~I~~~~GD~v~V~V~N~L---~~~ttiHWHGi~q~~~~~~DGv--------------~~--tQcpI~PG~sftY~F~~~ 119 (543)
T PLN02991 59 PDIISVTNDNLIINVFNHL---DEPFLISWSGIRNWRNSYQDGV--------------YG--TTCPIPPGKNYTYALQVK 119 (543)
T ss_pred CcEEEECCCEEEEEecCCC---CCCccEEECCcccCCCccccCC--------------CC--CCCccCCCCcEEEEEEeC
Confidence 4789999999999999963 4577899999873111111121 11 12357899999999998
Q ss_pred CCceeEEEEecchhhHhccceEEEEEecCC
Q 016876 336 ENPGIWLLHCHIDSHLTWGLAMAFLVENGV 365 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~ 365 (381)
+.+|.+-||+|...+...|+.+.+.|++.+
T Consensus 120 ~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~ 149 (543)
T PLN02991 120 DQIGSFYYFPSLGFHKAAGGFGAIRISSRP 149 (543)
T ss_pred CCCcceEEecCcchhhhCCCeeeEEEeCCc
Confidence 589999999999999999999999998653
No 41
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.65 E-value=0.00023 Score=72.64 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=73.0
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE 336 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~ 336 (381)
+.+.+..|+++.+.+.|.. ..+-.+|.||.+..--...+|.+- -.-.|+||+..+-+|.++
T Consensus 59 P~I~~~~gD~ivV~v~N~~---~~~~sihWhGv~q~kn~w~DG~~~----------------TqCPI~Pg~~~tY~F~v~ 119 (563)
T KOG1263|consen 59 PTINAEEGDTIVVNVVNRL---DEPFSIHWHGVRQRKNPWQDGVYI----------------TQCPIQPGENFTYRFTVK 119 (563)
T ss_pred CeEEEEeCCEEEEEEEeCC---CCceEEEeccccccCCccccCCcc----------------ccCCcCCCCeEEEEEEeC
Confidence 4789999999999999973 457789999997544333333221 123578999999999987
Q ss_pred -CceeEEEEecchhhHhccceEEEEEecCCC
Q 016876 337 -NPGIWLLHCHIDSHLTWGLAMAFLVENGVG 366 (381)
Q Consensus 337 -~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~ 366 (381)
..|.+.||.|..+|.+.||.+.|.|.+...
T Consensus 120 ~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~ 150 (563)
T KOG1263|consen 120 DQIGTLWYHSHVSWQRATGVFGALIINPRPG 150 (563)
T ss_pred CcceeEEEeeccccccccCceeEEEEcCCcc
Confidence 999999999999999999999999976654
No 42
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.44 E-value=0.00075 Score=55.63 Aligned_cols=59 Identities=15% Similarity=0.307 Sum_probs=47.5
Q ss_pred eEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeCC
Q 016876 258 LYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAEN 337 (381)
Q Consensus 258 ~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~~ 337 (381)
.+.++.|+.|+|++.|.+ +..|.+-++++.+ ...|.||++.+++|.++-
T Consensus 62 ~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~adK 110 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKS---PISEGFSIDAYGI----------------------------SEVIKAGETKTISFKADK 110 (135)
T ss_pred EEEECCCCEEEEEEEeCC---CCccceEECCCCc----------------------------ceEECCCCeEEEEEECCC
Confidence 578999999999999964 4567766665421 235788999999999999
Q ss_pred ceeEEEEecc
Q 016876 338 PGIWLLHCHI 347 (381)
Q Consensus 338 pG~w~~HCHi 347 (381)
||.|-|||-.
T Consensus 111 pG~Y~y~C~~ 120 (135)
T TIGR03096 111 AGAFTIWCQL 120 (135)
T ss_pred CEEEEEeCCC
Confidence 9999999953
No 43
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.29 E-value=0.0013 Score=67.37 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=58.1
Q ss_pred eEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeCC
Q 016876 258 LYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAEN 337 (381)
Q Consensus 258 ~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~~ 337 (381)
.+.++.|+.|.+++.|.....+..|.|.+-++... +.+.||....+.|+++.
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI~----------------------------~dv~PG~t~svtF~adk 607 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGVN----------------------------MEVAPQATASVTFTADK 607 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCcc----------------------------EEEcCCceEEEEEEcCC
Confidence 46788999999999996422356777777554322 24568899999999999
Q ss_pred ceeEEEEecchhhHh-ccceEEEEEec
Q 016876 338 PGIWLLHCHIDSHLT-WGLAMAFLVEN 363 (381)
Q Consensus 338 pG~w~~HCHi~~H~~-~Gm~~~~~v~~ 363 (381)
||.|.+||...-|.. .+|.+.+.|++
T Consensus 608 PGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 608 PGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CEEEEEECCcccccCcccceEEEEEEe
Confidence 999999998743221 39999999865
No 44
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.06 E-value=0.003 Score=50.03 Aligned_cols=68 Identities=19% Similarity=0.382 Sum_probs=41.9
Q ss_pred eEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeCC
Q 016876 258 LYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAEN 337 (381)
Q Consensus 258 ~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~~ 337 (381)
.+.++.|+.+.+++.|.+ ...|-+.+.+.. . ...|.+|+..++.|.++.
T Consensus 36 ~i~v~~G~~v~l~~~N~~---~~~h~~~i~~~~---------------------------~-~~~l~~g~~~~~~f~~~~ 84 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNND---SRPHEFVIPDLG---------------------------I-SKVLPPGETATVTFTPLK 84 (104)
T ss_dssp EEEEETTCEEEEEEEE-S---SS-EEEEEGGGT---------------------------E-EEEE-TT-EEEEEEEE-S
T ss_pred EEEEcCCCeEEEEEEECC---CCcEEEEECCCc---------------------------e-EEEECCCCEEEEEEcCCC
Confidence 689999999999999975 233444444411 1 257788999999999999
Q ss_pred ceeEEEEecchhhHhccceEEEE
Q 016876 338 PGIWLLHCHIDSHLTWGLAMAFL 360 (381)
Q Consensus 338 pG~w~~HCHi~~H~~~Gm~~~~~ 360 (381)
||.|-|+|-+-.+ |-+.+.
T Consensus 85 ~G~y~~~C~~~~~----m~G~li 103 (104)
T PF13473_consen 85 PGEYEFYCTMHPN----MKGTLI 103 (104)
T ss_dssp -EEEEEB-SSS-T----TB----
T ss_pred CEEEEEEcCCCCc----ceeccc
Confidence 9999999995443 555443
No 45
>PRK02710 plastocyanin; Provisional
Probab=97.01 E-value=0.0028 Score=51.62 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=51.4
Q ss_pred eEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeCC
Q 016876 258 LYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAEN 337 (381)
Q Consensus 258 ~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~~ 337 (381)
.+.++.|++|+|+ |.+ ...|.+.+.+.... + .. ...+.+|+...+.|..
T Consensus 48 ~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~~--~---------------------~~-~~~~~pg~t~~~tF~~-- 96 (119)
T PRK02710 48 TLTIKAGDTVKWV--NNK---LAPHNAVFDGAKEL--S---------------------HK-DLAFAPGESWEETFSE-- 96 (119)
T ss_pred EEEEcCCCEEEEE--ECC---CCCceEEecCCccc--c---------------------cc-ccccCCCCEEEEEecC--
Confidence 5789999999886 432 34787765432100 0 01 1346788888877776
Q ss_pred ceeEEEEecchhhHhccceEEEEEe
Q 016876 338 PGIWLLHCHIDSHLTWGLAMAFLVE 362 (381)
Q Consensus 338 pG~w~~HCHi~~H~~~Gm~~~~~v~ 362 (381)
||.|.|+|- -|.+.||-+.+.|+
T Consensus 97 ~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 79999999999983
No 46
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.0048 Score=51.67 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=63.3
Q ss_pred eEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeCC
Q 016876 258 LYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAEN 337 (381)
Q Consensus 258 ~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~~ 337 (381)
.+.++.|++++.++.|.+. .-|=|-+- ++.... +.+........ ..-.-..++.|.||.+..+.+.+.+
T Consensus 64 ~~~v~aG~tv~~v~~n~~e---l~hef~~~---~~~~~~--~~~~~~~~~~D---me~d~~~~v~L~PG~s~elvv~ft~ 132 (158)
T COG4454 64 SFEVKAGETVRFVLKNEGE---LKHEFTMD---APDKNL--EHVTHMILADD---MEHDDPNTVTLAPGKSGELVVVFTG 132 (158)
T ss_pred cccccCCcEEeeeecCccc---ceEEEecc---Cccccc--hhHHHhhhCCc---cccCCcceeEeCCCCcEEEEEEecC
Confidence 4577899999999999752 23433332 111100 11100000000 0112345899999999999999999
Q ss_pred ceeEEEEecchhhHhccceEEEEEe
Q 016876 338 PGIWLLHCHIDSHLTWGLAMAFLVE 362 (381)
Q Consensus 338 pG~w~~HCHi~~H~~~Gm~~~~~v~ 362 (381)
+|.+.|-|-|.+|.+.||-+.|.|.
T Consensus 133 ~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 133 AGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CccEEEEecCCCcccCCcEEEEEeC
Confidence 9999999999999999999999984
No 47
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.50 E-value=0.014 Score=58.74 Aligned_cols=77 Identities=23% Similarity=0.316 Sum_probs=65.7
Q ss_pred CeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCcc---CceEeeEEEeccCcEEEEEEEeCCCCccceeee
Q 016876 20 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT---KPFPTSVIMIAPGQTTNVLLTADQPPARYYMAA 96 (381)
Q Consensus 20 ~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v---~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~ 96 (381)
...+.++.|+++||+|.|-.. -..-|.+.||.|.|++.| ... .+..-|++.+.+|+|..+.++++ .+|.|.+..
T Consensus 356 ~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~~v~~~a~-~~g~~~~HC 432 (451)
T COG2132 356 RVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGERLLVRFDAD-YPGPWMFHC 432 (451)
T ss_pred cCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeEEEEEEeCC-CCCceEEec
Confidence 567899999999999999998 556799999999999999 333 35677999999999999999988 556888887
Q ss_pred eec
Q 016876 97 HAY 99 (381)
Q Consensus 97 ~~~ 99 (381)
+..
T Consensus 433 H~l 435 (451)
T COG2132 433 HIL 435 (451)
T ss_pred cch
Confidence 653
No 48
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.93 E-value=0.039 Score=44.64 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=31.0
Q ss_pred CCcEEEEEEEeCCceeEEEEecchhhHhccceEEEEEecCCCcC
Q 016876 325 PGGWVAVRFVAENPGIWLLHCHIDSHLTWGLAMAFLVENGVGKL 368 (381)
Q Consensus 325 ~~~~~~i~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~ 368 (381)
++....+. ++.+|.+-|+|- -|...||.+.+.|....-.+
T Consensus 54 ~g~~~~~t--F~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~~n~ 93 (116)
T TIGR02375 54 INEEYTVT--VTEEGVYGVKCT--PHYGMGMVALIQVGDPPANL 93 (116)
T ss_pred CCCEEEEE--eCCCEEEEEEcC--CCccCCCEEEEEECCCCcCH
Confidence 45555544 478999999999 99999999999996543333
No 49
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=95.39 E-value=0.11 Score=39.18 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=45.3
Q ss_pred eEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeCC
Q 016876 258 LYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAEN 337 (381)
Q Consensus 258 ~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~~ 337 (381)
.+.++.|++|.|+ |.+ ...|-++++.-.+ +..+ +. ...+.+|.... ++++.
T Consensus 12 ~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~~--------------~~-~~~~~~g~~~~--~tf~~ 62 (83)
T TIGR02657 12 ELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEAA--------------LK-GPMMKKEQAYS--LTFTE 62 (83)
T ss_pred EEEECCCCEEEEE--ECC---CCCccEEecCCCC-------cccc--------------cc-ccccCCCCEEE--EECCC
Confidence 6789999999884 532 4568887643211 0000 11 11234566554 55678
Q ss_pred ceeEEEEecchhhHhccceEEEEEe
Q 016876 338 PGIWLLHCHIDSHLTWGLAMAFLVE 362 (381)
Q Consensus 338 pG~w~~HCHi~~H~~~Gm~~~~~v~ 362 (381)
||.|.|||-+ |. +|-+.+.|+
T Consensus 63 ~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 63 AGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CEEEEEEcCC--CC--CCeEEEEEC
Confidence 9999999975 44 599988873
No 50
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=95.38 E-value=0.076 Score=43.89 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=50.1
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeeee
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHA 98 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~~ 98 (381)
.+..|+|++|++++|++.|.... .-.|.|+++. -...|.+||+..+-+.++ .+|.|+.....
T Consensus 59 ~P~~I~VkaGD~Vtl~vtN~d~~-~H~f~i~~~g----------------is~~I~pGet~TitF~ad-KpG~Y~y~C~~ 120 (135)
T TIGR03096 59 EPEALVVKKGTPVKVTVENKSPI-SEGFSIDAYG----------------ISEVIKAGETKTISFKAD-KAGAFTIWCQL 120 (135)
T ss_pred cCCEEEECCCCEEEEEEEeCCCC-ccceEECCCC----------------cceEECCCCeEEEEEECC-CCEEEEEeCCC
Confidence 78899999999999999998874 4456666542 157789999999999988 77999988654
No 51
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=95.12 E-value=0.15 Score=41.12 Aligned_cols=73 Identities=25% Similarity=0.392 Sum_probs=48.6
Q ss_pred eEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeCC
Q 016876 258 LYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAEN 337 (381)
Q Consensus 258 ~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~~ 337 (381)
.+.++.|++|.|+-... ...|-.. +.+.+.|+. ......+|....+.| +.
T Consensus 43 ~ltV~~GdTVtw~~~~d----~~~HnV~---------s~~~~~f~s---------------~~~~~~~G~t~s~Tf--~~ 92 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGE----GGGHNVV---------SDGDGDLDE---------------SERVSEEGTTYEHTF--EE 92 (115)
T ss_pred EEEECCCCEEEEEECCC----CCCEEEE---------ECCCCCccc---------------cccccCCCCEEEEEe--cC
Confidence 57899999999985431 2345443 222223321 011234577766666 68
Q ss_pred ceeEEEEecchhhHhccceEEEEEe
Q 016876 338 PGIWLLHCHIDSHLTWGLAMAFLVE 362 (381)
Q Consensus 338 pG~w~~HCHi~~H~~~Gm~~~~~v~ 362 (381)
||.+.|+|- -|...||.+.+.|+
T Consensus 93 ~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 93 PGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CcEEEEEcc--CCCCCCCEEEEEEC
Confidence 999999998 89999999999883
No 52
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=95.12 E-value=0.12 Score=40.69 Aligned_cols=61 Identities=23% Similarity=0.370 Sum_probs=42.0
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeee
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAH 97 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~ 97 (381)
.+.++++++|+.++|.+.|.+... ..|.+++ .-....|.+|+...+.+... ++|.|.+...
T Consensus 33 ~P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~----------------~~~~~~l~~g~~~~~~f~~~-~~G~y~~~C~ 93 (104)
T PF13473_consen 33 SPSTITVKAGQPVTLTFTNNDSRP-HEFVIPD----------------LGISKVLPPGETATVTFTPL-KPGEYEFYCT 93 (104)
T ss_dssp ES-EEEEETTCEEEEEEEE-SSS--EEEEEGG----------------GTEEEEE-TT-EEEEEEEE--S-EEEEEB-S
T ss_pred ecCEEEEcCCCeEEEEEEECCCCc-EEEEECC----------------CceEEEECCCCEEEEEEcCC-CCEEEEEEcC
Confidence 677999999999999999998775 5555555 11237789999999999765 7799988764
No 53
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.05 E-value=0.39 Score=42.15 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=61.5
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCC---CCCCccC--CCCCCccceEEeCCCcEEEE
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPS---TDTAKFN--LIDPPRRNTIGTPPGGWVAV 331 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~---~~~~~~n--~~~p~~rDtv~v~~~~~~~i 331 (381)
..+.++.|-.|.+++.|.+ ...| .|-|+..+....... .+..-+. -..+.--..--|.+|.....
T Consensus 86 m~i~VPAGw~V~i~f~N~~---~l~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~ 155 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQE---SLPH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASG 155 (196)
T ss_pred EEEEEcCCCEEEEEEEcCC---CCCe-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeE
Confidence 4678999999999999964 3344 566664432111100 0000000 00111111123456777766
Q ss_pred EEEeCCceeEEEEecchhhHhccceEEEEEecCC
Q 016876 332 RFVAENPGIWLLHCHIDSHLTWGLAMAFLVENGV 365 (381)
Q Consensus 332 ~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~ 365 (381)
.+..-.+|.|.|-|-+.-|.+.||.+.|.|....
T Consensus 156 ~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 156 VYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred EEccCCCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 6666689999999999999999999999997553
No 54
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=94.60 E-value=0.043 Score=44.47 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=56.1
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEE-EeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeee
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTV-VGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAH 97 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~V-Ia~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~ 97 (381)
..|+|.++.|++++++|.|.... ...+.+.|-.+.- -..||.+-.+. -.|.||+.+..-+++++.+|.||-...
T Consensus 24 pGPtI~v~~Gd~v~i~~~N~l~~-~~siH~HG~~~~~~~~~DG~~~~~~----~~i~pG~~~~Y~~~~~~~~Gt~wYH~H 98 (117)
T PF07732_consen 24 PGPTIRVREGDTVRITVTNNLDE-PTSIHWHGLHQPPSPWMDGVPGVTQ----CPIAPGESFTYEFTANQQAGTYWYHSH 98 (117)
T ss_dssp SEEEEEEETTEEEEEEEEEESSS-GBSEEEETSBSTTGGGGSGGTTTSG----SSBSTTEEEEEEEEESSCSEEEEEEEC
T ss_pred CCCEEEEEcCCeeEEEEEecccc-ccccccceeeeeeeeecCCcccccc----eeEEeecceeeeEeeeccccceeEeeC
Confidence 66899999999999999999844 3446665532211 02677654221 247899999999999977899999987
Q ss_pred ecc
Q 016876 98 AYN 100 (381)
Q Consensus 98 ~~~ 100 (381)
...
T Consensus 99 ~~~ 101 (117)
T PF07732_consen 99 VHG 101 (117)
T ss_dssp STT
T ss_pred CCc
Confidence 543
No 55
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.14 E-value=0.69 Score=37.63 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=53.7
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
.+.+.++.|+.+++.+.+. +..|.|.+.+...++ .+.||....+.|++
T Consensus 45 ~~~l~lp~g~~v~~~ltS~----DViHsf~ip~~~~k~----------------------------d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE----DVIHSFWIPELGIKM----------------------------DAIPGRTNSVTFTP 92 (120)
T ss_dssp SSEEEEETTSEEEEEEEES----SS-EEEEETTCTEEE----------------------------EEBTTCEEEEEEEE
T ss_pred cceecccccceEeEEEEcC----CccccccccccCccc----------------------------ccccccceeeeeee
Confidence 4578999999999999984 557988887766544 23568888999999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEE
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLV 361 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v 361 (381)
+.||.+-..|...=... ..|.+.+.|
T Consensus 93 ~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 93 DKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 99999999997664333 334444443
No 56
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=93.18 E-value=0.52 Score=42.03 Aligned_cols=75 Identities=19% Similarity=0.241 Sum_probs=55.9
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE 336 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~ 336 (381)
+.+.++.|+.|++.+.+. +..|.|.+-+...+ ...-||....+.|+++
T Consensus 117 ~~l~vp~g~~v~~~~ts~----DV~Hsf~ip~~~~k----------------------------~da~PG~~~~~~~~~~ 164 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSK----DVIHSFWVPELGGK----------------------------IDAIPGQYNALWFNAD 164 (201)
T ss_pred CEEEEEcCCEEEEEEEeC----chhhcccccccCce----------------------------EEecCCcEEEEEEEeC
Confidence 467899999999999984 34566655443222 2345788899999999
Q ss_pred CceeEEEEecc---hhhHhccceEEEEEecCC
Q 016876 337 NPGIWLLHCHI---DSHLTWGLAMAFLVENGV 365 (381)
Q Consensus 337 ~pG~w~~HCHi---~~H~~~Gm~~~~~v~~~~ 365 (381)
.||.+...|.. ..| ..|.+.+.|.+.+
T Consensus 165 ~~G~y~~~c~e~cG~~h--~~M~~~v~v~~~~ 194 (201)
T TIGR02866 165 EPGVYYGYCAELCGAGH--SLMLFKVVVVERE 194 (201)
T ss_pred CCEEEEEEehhhCCcCc--cCCeEEEEEECHH
Confidence 99999999987 445 7788888886543
No 57
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=92.89 E-value=0.37 Score=40.77 Aligned_cols=83 Identities=13% Similarity=0.182 Sum_probs=47.9
Q ss_pred cCCCC-CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCee--EEE-EeeCCCccCceEeeEEEeccCcE--EEEEEEeCC
Q 016876 14 MNCNA-ETVRFPVEAGETILLRIINSAMNQEHFFGVANHK--LTV-VGVDTSYTKPFPTSVIMIAPGQT--TNVLLTADQ 87 (381)
Q Consensus 14 ~~~~~-~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~--m~V-Ia~DG~~v~P~~v~~l~l~~GeR--ydVlV~~~~ 87 (381)
|+.++ ..+.|.+++|+++++++.|........|.|..+. +.. -..||.+..+...-.-...+|+. .++..+++
T Consensus 44 f~~~~~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~- 122 (148)
T TIGR03095 44 FEIHDLKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFS- 122 (148)
T ss_pred EEecCCCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECC-
Confidence 33434 5577889999999999999976333344444332 111 13566543211100001123555 47888887
Q ss_pred CCccceeeee
Q 016876 88 PPARYYMAAH 97 (381)
Q Consensus 88 ~~g~y~lr~~ 97 (381)
.+|.||....
T Consensus 123 ~aGtywyhC~ 132 (148)
T TIGR03095 123 TAGTYWYLCT 132 (148)
T ss_pred CCeEEEEEcC
Confidence 6799999865
No 58
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=92.82 E-value=0.38 Score=42.25 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=54.3
Q ss_pred cCCCC-CCeeEEeeCCCEEEEEEEecCCCce-eEEEEcCe---eEEEEeeCCCccC-----ceEeeEEEeccCcEEEEEE
Q 016876 14 MNCNA-ETVRFPVEAGETILLRIINSAMNQE-HFFGVANH---KLTVVGVDTSYTK-----PFPTSVIMIAPGQTTNVLL 83 (381)
Q Consensus 14 ~~~~~-~~~~~~v~~Gk~yRlRlINa~~~~~-~~~~idgh---~m~VIa~DG~~v~-----P~~v~~l~l~~GeRydVlV 83 (381)
||+.. ...+|.|.+|-++.++++|.++..+ +.+--.+- ..-.|..||.-+. |-....--|.+||+++.+.
T Consensus 78 fnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~ 157 (196)
T PF06525_consen 78 FNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVY 157 (196)
T ss_pred eecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEE
Confidence 34444 7899999999999999999987653 21211111 2346777776551 2122233567999999776
Q ss_pred EeCCCCccceeeee
Q 016876 84 TADQPPARYYMAAH 97 (381)
Q Consensus 84 ~~~~~~g~y~lr~~ 97 (381)
..- ++|.|||...
T Consensus 158 ~~l-~aG~YwlvC~ 170 (196)
T PF06525_consen 158 NDL-PAGYYWLVCG 170 (196)
T ss_pred ccC-CCceEEEEcc
Confidence 532 6799999874
No 59
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=92.55 E-value=0.69 Score=37.96 Aligned_cols=73 Identities=22% Similarity=0.275 Sum_probs=46.7
Q ss_pred eEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeCC
Q 016876 258 LYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAEN 337 (381)
Q Consensus 258 ~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~~ 337 (381)
.++++.|++|+|+-.. ...|-.+.=+-. . |..-+.+...++.+....|..
T Consensus 55 ~v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~---------~--------------~~g~~~~~~~~~~s~~~Tfe~-- 104 (128)
T COG3794 55 EVTVKPGDTVTWVNTD-----SVGHNVTAVGGM---------D--------------PEGSGTLKAGINESFTHTFET-- 104 (128)
T ss_pred EEEECCCCEEEEEECC-----CCCceEEEeCCC---------C--------------cccccccccCCCcceEEEecc--
Confidence 4689999999998542 225554433322 0 101122222334555555554
Q ss_pred ceeEEEEecchhhHhccceEEEEEe
Q 016876 338 PGIWLLHCHIDSHLTWGLAMAFLVE 362 (381)
Q Consensus 338 pG~w~~HCHi~~H~~~Gm~~~~~v~ 362 (381)
||.+.|.|- -|...||-+.+.|.
T Consensus 105 ~G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 105 PGEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred cceEEEEec--cCCCCCcEEEEEeC
Confidence 999999996 68999999999985
No 60
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=92.29 E-value=1.8 Score=37.47 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=60.8
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCC--C--CCCCCccCC--CCCCccceEEeCCCcEE
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFN--P--STDTAKFNL--IDPPRRNTIGTPPGGWV 329 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~--~--~~~~~~~n~--~~p~~rDtv~v~~~~~~ 329 (381)
...+-++.|-.|.+++.|.. ..+| .+.++-.+. ++. + ..+...+++ ..+..-..=-+.+|...
T Consensus 84 ~mtIyiPaGw~V~V~f~N~e---~~pH-------nl~iv~n~t-~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 84 AMTIYLPAGWNVYVTFTNYE---SLPH-------NLKLLPNST-QTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred ceEEEEeCCCEEEEEEEcCC---CCCc-------cEEEecCCC-CCCCccccccCceeEeecccccCcccccccccccee
Confidence 35788999999999999964 3344 445554331 111 0 000011100 00111111123456676
Q ss_pred EEEEEeCCceeEEEEecchhhHhccceEEEEEecCC
Q 016876 330 AVRFVAENPGIWLLHCHIDSHLTWGLAMAFLVENGV 365 (381)
Q Consensus 330 ~i~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~~ 365 (381)
...+..-.||.+-+-|-+.-|++.||.+.+.|....
T Consensus 153 sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 153 SGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred EEEeccCCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 677777799999999999999999999999986543
No 61
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=86.98 E-value=1.8 Score=33.69 Aligned_cols=65 Identities=17% Similarity=0.315 Sum_probs=40.7
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCcc-----Cc-eEeeEEEeccCcEEEEEEEeCCCCccc
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT-----KP-FPTSVIMIAPGQTTNVLLTADQPPARY 92 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v-----~P-~~v~~l~l~~GeRydVlV~~~~~~g~y 92 (381)
.+..|+|++|++++|. |.+.. .|++++.+. +.+. .+ ..-+.+.+.|||.+++-++. +|.|
T Consensus 15 ~P~~i~v~~G~~V~~~--N~~~~--------~H~~~~~~~-~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y 80 (99)
T TIGR02656 15 EPAKISIAAGDTVEWV--NNKGG--------PHNVVFDED-AVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTY 80 (99)
T ss_pred eCCEEEECCCCEEEEE--ECCCC--------CceEEECCC-CCccchhhhcccccccccccCCCCEEEEEeCC---CEEE
Confidence 6778999999988665 76532 233333211 1111 11 12256788999999996653 6899
Q ss_pred eeeee
Q 016876 93 YMAAH 97 (381)
Q Consensus 93 ~lr~~ 97 (381)
.....
T Consensus 81 ~y~C~ 85 (99)
T TIGR02656 81 TFYCE 85 (99)
T ss_pred EEEcC
Confidence 88864
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=86.02 E-value=1.5 Score=36.90 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=54.6
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEc------CeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccc
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVA------NHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARY 92 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~id------gh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y 92 (381)
.+..++++.|+++|+-+-|.+-.-. .|.++ +|.-..+.+| ..+=-..+.+.|.||+.-.++|.+. .+|.|
T Consensus 61 ~p~~~~v~aG~tv~~v~~n~~el~h-ef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft-~~g~y 136 (158)
T COG4454 61 KPSSFEVKAGETVRFVLKNEGELKH-EFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFT-GAGKY 136 (158)
T ss_pred CCCcccccCCcEEeeeecCcccceE-EEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEec-CCccE
Confidence 5668999999999999999886543 23333 2333344444 3333456789999999999999997 56899
Q ss_pred eeeee
Q 016876 93 YMAAH 97 (381)
Q Consensus 93 ~lr~~ 97 (381)
.++..
T Consensus 137 e~~C~ 141 (158)
T COG4454 137 EFACN 141 (158)
T ss_pred EEEec
Confidence 98874
No 63
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=84.86 E-value=18 Score=29.00 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=30.5
Q ss_pred EEEEEecCCC-ceeEEEEcCe----------------------eEEEEeeCCCcc--CceEeeEEEeccCcEEEEEEEeC
Q 016876 32 LLRIINSAMN-QEHFFGVANH----------------------KLTVVGVDTSYT--KPFPTSVIMIAPGQTTNVLLTAD 86 (381)
Q Consensus 32 RlRlINa~~~-~~~~~~idgh----------------------~m~VIa~DG~~v--~P~~v~~l~l~~GeRydVlV~~~ 86 (381)
++|+||++.. ..+.+.++|- +++|..+++..- .|.....+.|.+|..|.+++.-.
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~~~~~v~y~~~s~Y~~v~~G~~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~ 82 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTKVFSNVAYGQASDYLPVPPGTYTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGT 82 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEEEEccCCCCcccCceEECCceEEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECC
Confidence 6777777765 4466666543 344444443332 23444556666666666666543
No 64
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=83.59 E-value=5.3 Score=36.76 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=57.2
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
.+.+.++.|+.|++.+... +..|.|.+.+...++ ..-||....+.+++
T Consensus 136 ~n~l~lPv~~~V~f~ltS~----DViHsF~IP~l~~k~----------------------------d~iPG~~~~~~~~~ 183 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA----DVIHSFWIPQLGGKI----------------------------DAIPGMTTELWLTA 183 (247)
T ss_pred cceEEEeCCCeEEEEEEec----hhceeEEecCCCcee----------------------------eecCCceEEEEEec
Confidence 3467899999999999874 445766655554443 23467888899999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEecCCC
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVENGVG 366 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~~~~ 366 (381)
+.+|.+-.+|+..-=.. ..|-+.+.|.+.++
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 99999999998776333 45667777765543
No 65
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=81.33 E-value=5.5 Score=28.33 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=30.6
Q ss_pred eEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEE
Q 016876 22 RFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTN 80 (381)
Q Consensus 22 ~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRyd 80 (381)
+|++.+|+..+||.-. ...|.+.+-.++|.. || ..+-+.|.+||++.
T Consensus 1 ~~~L~~g~~~~lr~~~-----~~~l~v~~G~vWlT~-~g------~~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 1 TFELAPGETLSLRAAA-----GQRLRVESGRVWLTR-EG------DPDDYWLQAGDSLR 47 (63)
T ss_pred CEEeCCCceEEeEcCC-----CcEEEEccccEEEEC-CC------CCCCEEECCCCEEE
Confidence 3678899999999543 234777777888765 55 23445555555554
No 66
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=78.78 E-value=23 Score=26.62 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=35.4
Q ss_pred EEEEEEecCCCceeEEEEc-Ce--eEEEEeeCCCcc------Cc--eEeeEEEeccCcEEEEEEEeCCC---Cccceeee
Q 016876 31 ILLRIINSAMNQEHFFGVA-NH--KLTVVGVDTSYT------KP--FPTSVIMIAPGQTTNVLLTADQP---PARYYMAA 96 (381)
Q Consensus 31 yRlRlINa~~~~~~~~~id-gh--~m~VIa~DG~~v------~P--~~v~~l~l~~GeRydVlV~~~~~---~g~y~lr~ 96 (381)
..|++.|.+... +.|.+. |+ ++.|...||..| +. .......|.|||...+-.+.+.. +|.|.+.|
T Consensus 4 ~~l~v~N~s~~~-v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSDEP-VTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCCCe-EEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 457777777543 445554 33 455665667766 11 23467889999998888888764 68888764
No 67
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=76.93 E-value=13 Score=33.88 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=55.2
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
.+.+.++.|+.|++.+.+. +..|.|.+-+...++ ..-||....+.+.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts~----DViHsf~ip~~~~k~----------------------------d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA----DVIHSWTVPSLGVKV----------------------------DAIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC----ccccceeccccCcee----------------------------ECCCCcceeEEEEe
Confidence 4567899999999999984 446776665443322 23468888899999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEecC
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVENG 364 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~~ 364 (381)
+.||.+...|.-.-... ..|-..++|.+.
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEECH
Confidence 99999999998776543 456666666544
No 68
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=75.32 E-value=34 Score=27.64 Aligned_cols=62 Identities=23% Similarity=0.441 Sum_probs=45.4
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeeee
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHA 98 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~~ 98 (381)
....+.++.|+.+||+|-+.... ..|+|.+..++ +.+-||+.-.+-++++ .+|.|+++..-
T Consensus 44 ~~~~l~lp~g~~v~~~ltS~DVi--Hsf~ip~~~~k----------------~d~~PG~~~~~~~~~~-~~G~y~~~C~e 104 (120)
T PF00116_consen 44 TDNELVLPAGQPVRFHLTSEDVI--HSFWIPELGIK----------------MDAIPGRTNSVTFTPD-KPGTYYGQCAE 104 (120)
T ss_dssp BSSEEEEETTSEEEEEEEESSS---EEEEETTCTEE----------------EEEBTTCEEEEEEEES-SSEEEEEEE-S
T ss_pred ccceecccccceEeEEEEcCCcc--ccccccccCcc----------------cccccccceeeeeeec-cCCcEEEcCcc
Confidence 45689999999999999885544 44566665443 3445888888888887 78999999864
Q ss_pred c
Q 016876 99 Y 99 (381)
Q Consensus 99 ~ 99 (381)
+
T Consensus 105 ~ 105 (120)
T PF00116_consen 105 Y 105 (120)
T ss_dssp S
T ss_pred c
Confidence 4
No 69
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=75.06 E-value=30 Score=28.21 Aligned_cols=65 Identities=5% Similarity=0.009 Sum_probs=45.4
Q ss_pred eEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCcc-------CceEeeEEEeccCcEEEEEEEeCCCCcc
Q 016876 22 RFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT-------KPFPTSVIMIAPGQTTNVLLTADQPPAR 91 (381)
Q Consensus 22 ~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v-------~P~~v~~l~l~~GeRydVlV~~~~~~g~ 91 (381)
.|++..--.|+|++-. ....+|.|||..+ |+.++..- .+.....+.|..|++|+|-|...+..+.
T Consensus 53 ~~~~~~~G~y~f~~~~---~d~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~~~ 124 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTS---DDGARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRGGD 124 (145)
T ss_dssp EEEESSSEEEEEEEEE---SSEEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECSCS
T ss_pred EEecccCceEEEEEEe---cccEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECCCC
Confidence 4667666689999983 3357788999874 66666543 3556678899999999999997654443
No 70
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=74.73 E-value=25 Score=28.57 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=40.2
Q ss_pred EEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCcc-CceEeeEEEeccCcEEEEEEEeCCCCc
Q 016876 23 FPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT-KPFPTSVIMIAPGQTTNVLLTADQPPA 90 (381)
Q Consensus 23 ~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v-~P~~v~~l~l~~GeRydVlV~~~~~~g 90 (381)
|++...-.|+|.+.. ....+|.|||.. ||..++..- .+.....+.|..|++|.|-|+..+..+
T Consensus 52 i~~~~~G~y~f~~~~---~~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~ 115 (136)
T smart00758 52 LKPPEDGEYTFSITS---DDGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGT 115 (136)
T ss_pred EECCCCccEEEEEEc---CCcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCC
Confidence 555555578998843 334678888863 455544332 233445688889999998888754433
No 71
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=74.06 E-value=15 Score=26.25 Aligned_cols=66 Identities=18% Similarity=0.300 Sum_probs=37.9
Q ss_pred CeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeee
Q 016876 20 TVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAH 97 (381)
Q Consensus 20 ~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~ 97 (381)
.+.|++++|+++++.+-+.+. +..|.|...+|..+.-..-.. -..|..-.+-+++. .+|.|.|++.
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 468999999999988866665 334677777765442211111 01121222223343 6788998874
No 72
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=73.39 E-value=6.8 Score=30.38 Aligned_cols=65 Identities=28% Similarity=0.431 Sum_probs=43.4
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCcc-------CceEeeEEEeccCcEEEEEEEeCCCCcc
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT-------KPFPTSVIMIAPGQTTNVLLTADQPPAR 91 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v-------~P~~v~~l~l~~GeRydVlV~~~~~~g~ 91 (381)
.+..|+|++|++++ ++|... -+|++++.. |+... .+.. ....+.+||.+++-++ .+|.
T Consensus 15 ~P~~i~V~~G~tV~--~~n~~~--------~~Hnv~~~~-~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~tF~---~~G~ 79 (99)
T PF00127_consen 15 DPSEITVKAGDTVT--FVNNDS--------MPHNVVFVA-DGMPAGADSDYVPPGD-SSPLLAPGETYSVTFT---KPGT 79 (99)
T ss_dssp ESSEEEEETTEEEE--EEEESS--------SSBEEEEET-TSSHTTGGHCHHSTTC-EEEEBSTTEEEEEEEE---SSEE
T ss_pred eCCEEEECCCCEEE--EEECCC--------CCceEEEec-ccccccccccccCccc-cceecCCCCEEEEEeC---CCeE
Confidence 67899999999775 566522 235555554 43221 2222 6778999999999877 6688
Q ss_pred ceeeeee
Q 016876 92 YYMAAHA 98 (381)
Q Consensus 92 y~lr~~~ 98 (381)
|......
T Consensus 80 y~y~C~P 86 (99)
T PF00127_consen 80 YEYYCTP 86 (99)
T ss_dssp EEEEETT
T ss_pred EEEEcCC
Confidence 8888753
No 73
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=73.31 E-value=34 Score=30.27 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=53.7
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE 336 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~ 336 (381)
+.+.++.|+.+++.+... +..|.|.+.+...++ ..-||....+.+.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~k~----------------------------d~~PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNLKM----------------------------DAIPGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecC----ccccceeccccCcee----------------------------ecCCCceEEEEEEcC
Confidence 457889999999999864 456777665543322 224688888999999
Q ss_pred CceeEEEEecchhhHh-ccceEEEEEecC
Q 016876 337 NPGIWLLHCHIDSHLT-WGLAMAFLVENG 364 (381)
Q Consensus 337 ~pG~w~~HCHi~~H~~-~Gm~~~~~v~~~ 364 (381)
.+|.+-..|...-=.. ..|-..+.|.+.
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 9999999998664332 456666666443
No 74
>PRK02888 nitrous-oxide reductase; Validated
Probab=73.17 E-value=11 Score=39.18 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=41.9
Q ss_pred eCCCEEEEEEEecC-CCceeEEEEcC---eeEEEEeeCCC-cc------CceEeeEEEeccCcEEEEEEEeCCCCcccee
Q 016876 26 EAGETILLRIINSA-MNQEHFFGVAN---HKLTVVGVDTS-YT------KPFPTSVIMIAPGQTTNVLLTADQPPARYYM 94 (381)
Q Consensus 26 ~~Gk~yRlRlINa~-~~~~~~~~idg---h~m~VIa~DG~-~v------~P~~v~~l~l~~GeRydVlV~~~~~~g~y~l 94 (381)
+.|++|+.++.-.. .+..-.|.+.. -++++...|+. .| ..+.+ .+.+.|||...|-++++ .+|.||+
T Consensus 536 R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI-~~dv~PG~t~svtF~ad-kPGvy~~ 613 (635)
T PRK02888 536 RDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV-NMEVAPQATASVTFTAD-KPGVYWY 613 (635)
T ss_pred EeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccccceeecccCc-cEEEcCCceEEEEEEcC-CCEEEEE
Confidence 45666666666332 23333333321 24555555442 12 12222 35677999999999988 6799999
Q ss_pred eeeec
Q 016876 95 AAHAY 99 (381)
Q Consensus 95 r~~~~ 99 (381)
...-+
T Consensus 614 ~Ctef 618 (635)
T PRK02888 614 YCTWF 618 (635)
T ss_pred ECCcc
Confidence 87543
No 75
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=68.94 E-value=47 Score=24.98 Aligned_cols=67 Identities=22% Similarity=0.315 Sum_probs=40.8
Q ss_pred EeeCCCEEE--EEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEE-EeccCcEEEEEEEeCC-CCccceeeeeec
Q 016876 24 PVEAGETIL--LRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVI-MIAPGQTTNVLLTADQ-PPARYYMAAHAY 99 (381)
Q Consensus 24 ~v~~Gk~yR--lRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l-~l~~GeRydVlV~~~~-~~g~y~lr~~~~ 99 (381)
.+.+|+.++ +.+-|.|....-.+.+. +-.||..+ ....| .|.+|+...+-+.... .+|.|.|++...
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 456677775 67779887654444333 33455555 33444 7899999888888754 578888888653
No 76
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=68.62 E-value=38 Score=27.67 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=51.0
Q ss_pred CCeeEEeeC-CCEEEEEEEecCCCc----eeEEEE-cCeeEEEE-------eeCCCccCc----eEeeEEEeccCcEEEE
Q 016876 19 ETVRFPVEA-GETILLRIINSAMNQ----EHFFGV-ANHKLTVV-------GVDTSYTKP----FPTSVIMIAPGQTTNV 81 (381)
Q Consensus 19 ~~~~~~v~~-Gk~yRlRlINa~~~~----~~~~~i-dgh~m~VI-------a~DG~~v~P----~~v~~l~l~~GeRydV 81 (381)
...+|+|++ +|.+.+.|-|.+... ..++-| ...++.-| +.|-+||.+ +..++=.|++||..+|
T Consensus 14 d~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~sv 93 (125)
T TIGR02695 14 NTKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSV 93 (125)
T ss_pred cccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEE
Confidence 445899998 589999999998643 122222 11223322 235667743 2446668999999999
Q ss_pred EEEeCC-CCc-cceeeee
Q 016876 82 LLTADQ-PPA-RYYMAAH 97 (381)
Q Consensus 82 lV~~~~-~~g-~y~lr~~ 97 (381)
-++++. .+| +|....+
T Consensus 94 tF~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 94 TFDVSKLSAGEDYTFFCS 111 (125)
T ss_pred EEECCCCCCCCcceEEEc
Confidence 999864 344 6877654
No 77
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=68.48 E-value=27 Score=29.83 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=51.9
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.+++.+... +..|.|.+-+...++ ...||....+.+.+
T Consensus 72 Dn~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgvK~----------------------------DavPGr~n~l~~~~ 119 (162)
T PTZ00047 72 DKRLTLPTRTHIRFLITAT----DVIHSWSVPSLGIKA----------------------------DAIPGRLHKINTFI 119 (162)
T ss_pred cCCEEEeCCCEEEEEEEeC----ccceeeeccccCcee----------------------------eccCCceEEEEEec
Confidence 3467889999999999874 446776665543322 22367777788999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEec
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVEN 363 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~ 363 (381)
+.+|.+...|.-.-=.. ..|-..+.|..
T Consensus 120 ~~~G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 120 LREGVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred CCCeEEEEEcchhcCcCccCceEEEEEeC
Confidence 99999999997653211 34666666544
No 78
>PRK02710 plastocyanin; Provisional
Probab=68.09 E-value=19 Score=28.95 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=38.7
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeee
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAH 97 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~ 97 (381)
.+..+++++|++++| +|.... ..++.++ +. +......+.+.+|+.+++-++. +|.|.....
T Consensus 45 ~P~~i~v~~Gd~V~~--~N~~~~-~H~v~~~----------~~--~~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~ 105 (119)
T PRK02710 45 EPSTLTIKAGDTVKW--VNNKLA-PHNAVFD----------GA--KELSHKDLAFAPGESWEETFSE---AGTYTYYCE 105 (119)
T ss_pred eCCEEEEcCCCEEEE--EECCCC-CceEEec----------CC--ccccccccccCCCCEEEEEecC---CEEEEEEcC
Confidence 667899999998766 465432 2233333 21 1112234678999999977763 688877764
No 79
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=66.48 E-value=38 Score=27.65 Aligned_cols=97 Identities=16% Similarity=0.237 Sum_probs=60.6
Q ss_pred cceEEeec-CCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCC-----CCCCCccCCCC----CCccceEEeCC
Q 016876 256 TKLYKLKF-GSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNP-----STDTAKFNLID----PPRRNTIGTPP 325 (381)
Q Consensus 256 ~~~~~~~~-g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~-----~~~~~~~n~~~----p~~rDtv~v~~ 325 (381)
+..+.++. ++.+.++|.|.+.+ |--.=||.+ ||... +..+. ......-+|.. -++-.|=+|.+
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~l-----pk~~MgHN~-Vl~k~-~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkligg 87 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKL-----PKAVMGHNW-VLAKS-ADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGG 87 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcC-----chhccCccE-EEecc-ccHHHHHHHHHhcccccCccCCCCcceEEEccccCC
Confidence 34677776 58999999997632 222335554 34332 11110 00011112221 23556777899
Q ss_pred CcEEEEEEEeC--Ccee-EEEEecchhhHhccceEEEE
Q 016876 326 GGWVAVRFVAE--NPGI-WLLHCHIDSHLTWGLAMAFL 360 (381)
Q Consensus 326 ~~~~~i~f~~~--~pG~-w~~HCHi~~H~~~Gm~~~~~ 360 (381)
|+...|.|.+. .+|. |.|-|-..-|.. .|-+.+.
T Consensus 88 Ges~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 88 GEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred CceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 99999999975 5775 999999999997 6888764
No 80
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=60.93 E-value=27 Score=26.05 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=37.9
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeee
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAH 97 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~ 97 (381)
++..+++++|.++.| +|.... .|.++..+ |.. .........+.+|+.|++-++ ++|.|.....
T Consensus 9 ~P~~i~v~~GdtVt~--~N~d~~--------~Hnv~~~~--g~~-~~~~~~~~~~~~g~~~~~tf~---~~G~y~y~C~ 71 (83)
T TIGR02657 9 ETPELHVKVGDTVTW--INREAM--------PHNVHFVA--GVL-GEAALKGPMMKKEQAYSLTFT---EAGTYDYHCT 71 (83)
T ss_pred cCCEEEECCCCEEEE--EECCCC--------CccEEecC--CCC-ccccccccccCCCCEEEEECC---CCEEEEEEcC
Confidence 678999999999887 465432 14433322 211 011122335688999997664 5688877654
No 81
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=56.69 E-value=40 Score=30.57 Aligned_cols=76 Identities=9% Similarity=0.115 Sum_probs=51.1
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE 336 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~ 336 (381)
+.+.++.|+.|++.+... +..|+|.+- +-+ + .+|. -||....+.|+++
T Consensus 139 nel~lP~g~pV~~~ltS~----DViHSF~VP-------~l~-~-----------------K~Da---iPG~~n~~~~~~~ 186 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSN----SVMNSFFIP-------QLG-S-----------------QIYA---MAGMQTKLHLIAN 186 (226)
T ss_pred ceEEEECCCEEEEEEEEC----chhhhhhhh-------hcC-C-----------------eeec---CCCceEEEEEEeC
Confidence 357889999999999874 445665544 222 1 2233 3688888999999
Q ss_pred CceeEEEEecchhhHh-ccceEEEEEecC
Q 016876 337 NPGIWLLHCHIDSHLT-WGLAMAFLVENG 364 (381)
Q Consensus 337 ~pG~w~~HCHi~~H~~-~Gm~~~~~v~~~ 364 (381)
.||.|...|--.-=.. ..|...+.|.+.
T Consensus 187 ~~G~y~g~CaE~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 187 EPGVYDGISANYSGPGFSGMKFKAIATDR 215 (226)
T ss_pred CCEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 9999999996443221 456666666543
No 82
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=54.49 E-value=70 Score=29.32 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=53.6
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.+++.+... +..|.|.+-....++- .-||....+.|.+
T Consensus 150 ~n~lvlP~~~~v~~~~tS~----DViHsf~iP~lgvK~D----------------------------aiPG~~n~~~~~~ 197 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGA----DVLHSFAVPSLGLKID----------------------------AVPGRLNQTGFFI 197 (240)
T ss_pred CceEEEecCCEEEEEEEcC----CcccceeecccCceee----------------------------cCCCcceeEEEEc
Confidence 3568899999999999874 4567776665543332 2356777788999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEecC
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVENG 364 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~~ 364 (381)
+.||.+...|.-.--.. .-|-..++|.+.
T Consensus 198 ~~~G~y~g~C~e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 198 KRPGVFYGQCSEICGANHSFMPIVIEAVSL 227 (240)
T ss_pred CCCEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 99999999997665443 445555555443
No 83
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=52.00 E-value=79 Score=24.03 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=39.9
Q ss_pred eeCCCEEEEEEE--ecCCCceeEEEEcCe--eEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCC--Cccceeeeee
Q 016876 25 VEAGETILLRII--NSAMNQEHFFGVANH--KLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQP--PARYYMAAHA 98 (381)
Q Consensus 25 v~~Gk~yRlRlI--Na~~~~~~~~~idgh--~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~--~g~y~lr~~~ 98 (381)
-+||+++.||.+ +..+. .-...++ .++|..-+|..|.-... ........++.-+.+++. .|.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~~---~~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDND---FKPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECTT---CSCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEeccccc---cccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 479999999999 66621 1112233 35566666665522222 133566777777777664 5899999875
No 84
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=51.83 E-value=52 Score=29.58 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=50.2
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE 336 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~ 336 (381)
+.+.++.|+.|++.+... +..|.|.+ =+-+ + .+|. -||....+.|+++
T Consensus 130 n~l~iP~g~~v~~~ltS~----DViHsf~v-------P~l~-~-----------------k~da---iPG~~~~~~~~~~ 177 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSA----DTMTSFWI-------PQLG-G-----------------QKYA---MTGMTMNWYLQAD 177 (217)
T ss_pred CcEEEECCCEEEEEEECC----chhhhhhc-------hhhC-c-----------------eeec---CCCceEEEEEEeC
Confidence 356889999999999874 34565544 2221 1 2233 3788889999999
Q ss_pred CceeEEEEecchhhH-hccceEEEEEecC
Q 016876 337 NPGIWLLHCHIDSHL-TWGLAMAFLVENG 364 (381)
Q Consensus 337 ~pG~w~~HCHi~~H~-~~Gm~~~~~v~~~ 364 (381)
.||.+-..|--.-=. -.-|...+.|.+.
T Consensus 178 ~~G~y~g~Cae~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 178 QVGTYRGRNANFNGEGFADQTFDVNAVSE 206 (217)
T ss_pred CCEEEEEEehhhcCccccCCeEEEEEeCH
Confidence 999999999544211 1356666665544
No 85
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=51.16 E-value=99 Score=28.08 Aligned_cols=76 Identities=12% Similarity=0.184 Sum_probs=53.2
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.|++.+.+. +..|.|.+.+...++ ..-||....+.+.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~----DViHsf~vP~~~~k~----------------------------daiPG~~~~~~~~~ 186 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAA----DVIHSWTVPSLGVKV----------------------------DAVPGRLNQIGFTI 186 (228)
T ss_pred CceEEEecCCEEEEEEEeC----CccccccccccCcce----------------------------ecCCCceEEEEEEe
Confidence 4567899999999999984 446666655544332 22467888889999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEec
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVEN 363 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~ 363 (381)
+.||.+...|.-.-... .-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 187 TRPGVFYGQCSEICGANHSFMPIVLEAVD 215 (228)
T ss_pred CCCEEEEEEChhhcCcCccCceeEEEEEC
Confidence 99999999997665443 44555555543
No 86
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.18 E-value=76 Score=28.83 Aligned_cols=74 Identities=9% Similarity=0.194 Sum_probs=51.2
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.+++.+... +..|.|.+.....++ |. -||....+.+.+
T Consensus 139 dn~lvlP~~~~v~~~~tS~----DViHsf~iP~lg~k~-------------------------da---iPG~~~~~~~~~ 186 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSSA----DVLHSWAVPSLGVKM-------------------------DA---VPGRLNQTTFFI 186 (229)
T ss_pred CceEEEecCeEEEEEEEEC----CccccccccccCcee-------------------------ec---CCCceEEEEEEc
Confidence 4567899999999999874 456776665543322 22 367778889999
Q ss_pred CCceeEEEEecchhhHhcc-ceEEEEE
Q 016876 336 ENPGIWLLHCHIDSHLTWG-LAMAFLV 361 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~~G-m~~~~~v 361 (381)
+.||.+...|.-.--...+ |-..+.|
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~v 213 (229)
T MTH00038 187 SRTGLFYGQCSEICGANHSFMPIVIES 213 (229)
T ss_pred CCCEEEEEEcccccCcCcCCCeEEEEE
Confidence 9999999999766544433 3344443
No 87
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=49.77 E-value=58 Score=25.92 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=26.6
Q ss_pred CEEEEEEEecCCCc-eeEEEEcCe-eEEEEeeCCCccCceEeeEEEeccCcEEEEEEEe
Q 016876 29 ETILLRIINSAMNQ-EHFFGVANH-KLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTA 85 (381)
Q Consensus 29 k~yRlRlINa~~~~-~~~~~idgh-~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~ 85 (381)
-.|+|+|+|-+... .|.++++|. .+++ . .....+.|.+|+..++-|..
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l--------~-~~~~~i~v~~g~~~~~~v~v 82 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAEL--------Q-GPENTITVPPGETREVPVFV 82 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEE--------E-CCCcceEECCCCEEEEEEEE
Confidence 36889999988764 477877774 2333 1 13357788888876665554
No 88
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=48.20 E-value=1.4e+02 Score=24.20 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=39.0
Q ss_pred EEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccC------ceEeeEEEeccCcEEEEEEEeCC
Q 016876 30 TILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTK------PFPTSVIMIAPGQTTNVLLTADQ 87 (381)
Q Consensus 30 ~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~------P~~v~~l~l~~GeRydVlV~~~~ 87 (381)
.++|.|-|.|...+---...+ +..+..||..+. ......+.|.||+...+.|....
T Consensus 21 ~~~l~~tN~s~~~C~l~G~P~--v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 21 HATLTFTNTSDTPCTLYGYPG--VALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred EEEEEEEECCCCcEEeccCCc--EEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 457999999988654333333 555578888552 12456799999999999998764
No 89
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=47.58 E-value=1.3e+02 Score=25.10 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=46.0
Q ss_pred CEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEe-------eEEEeccCcEE-EEEEEeCCCCccceeeee
Q 016876 29 ETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT-------SVIMIAPGQTT-NVLLTADQPPARYYMAAH 97 (381)
Q Consensus 29 k~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v-------~~l~l~~GeRy-dVlV~~~~~~g~y~lr~~ 97 (381)
.+|-|-+=|.|... +.++.-.++|+ +||+.+.|..+ +.+.|.|||=- .+.|.-. ..|...+.+.
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~-lSGyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEA-LSGYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccC-CCcceEEEEE
Confidence 46788888998776 66788888887 89999987654 36679999976 6666544 2355556554
No 90
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=47.51 E-value=86 Score=30.80 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=27.5
Q ss_pred EeCCCcEEEEEEEeCCceeEEEEecchhhHhccceEEEEEecC
Q 016876 322 GTPPGGWVAVRFVAENPGIWLLHCHIDSHLTWGLAMAFLVENG 364 (381)
Q Consensus 322 ~v~~~~~~~i~f~~~~pG~w~~HCHi~~H~~~Gm~~~~~v~~~ 364 (381)
.|.||.+..+.+.. .||.|-|+| ..| ..|-+.|.|..+
T Consensus 81 nIaPG~s~~l~~~L-~pGtY~~~C--~~~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 81 NIAPGFSQKMTANL-QPGEYDMTC--GLL--TNPKGKLIVKGE 118 (375)
T ss_pred ccCCCCceEEEEec-CCceEEeec--CcC--CCCCceEEEeCC
Confidence 56778666665554 599999999 446 446888998754
No 91
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=46.84 E-value=84 Score=27.46 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=49.2
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEE-cCee----EEEEeeCCCcc-CceEeeEE----EeccCcEEEEEEEeCCC
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGV-ANHK----LTVVGVDTSYT-KPFPTSVI----MIAPGQTTNVLLTADQP 88 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~i-dgh~----m~VIa~DG~~v-~P~~v~~l----~l~~GeRydVlV~~~~~ 88 (381)
..++|-+.+|-++.+-|+|....- .++.| ..-+ =-.++.||..+ .+=....+ -|..||+.+.+.+.- .
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e~~p-Hnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~-~ 160 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYESLP-HNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDT-S 160 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCCCCC-ccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccC-C
Confidence 779999999999999999998543 22222 1111 12355666444 11111122 356889977777655 7
Q ss_pred Cccceeeeee
Q 016876 89 PARYYMAAHA 98 (381)
Q Consensus 89 ~g~y~lr~~~ 98 (381)
+|.||+...-
T Consensus 161 ~G~YwlvCgi 170 (195)
T TIGR03094 161 AGKYWLVCGI 170 (195)
T ss_pred CeeEEEEccc
Confidence 8999998743
No 92
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=46.35 E-value=44 Score=26.90 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=36.0
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeee
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAH 97 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~ 97 (381)
++..++|++|.+++|...+.+ |..+ +.++ ..|...+.+...+|+.|++-+ + .+|.|.....
T Consensus 13 ~P~~v~V~~GdTV~f~n~d~~-----------Hnv~--~~~~--~~p~g~~~~~s~~g~~~~~tF--~-~~G~Y~Y~C~ 73 (116)
T TIGR02375 13 EPAYIRAAPGDTVTFVPTDKG-----------HNVE--TIKG--MIPEGAEAFKSKINEEYTVTV--T-EEGVYGVKCT 73 (116)
T ss_pred eCCEEEECCCCEEEEEECCCC-----------eeEE--EccC--CCcCCcccccCCCCCEEEEEe--C-CCEEEEEEcC
Confidence 778999999999999887742 3222 2111 012112223334577666555 4 5688877764
No 93
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=46.11 E-value=43 Score=27.71 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=26.3
Q ss_pred CeeEEeeCCCEE--EEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEe
Q 016876 20 TVRFPVEAGETI--LLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPT 68 (381)
Q Consensus 20 ~~~~~v~~Gk~y--RlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v 68 (381)
...|+++.|-+| +.+|+|+.+-+ .| +-.+++|-.+||..+.|...
T Consensus 74 ~a~~~~~~gG~y~~~VeLCN~~GCS---~S-~~~~V~VaDTDGsHl~pL~~ 120 (133)
T PF08329_consen 74 SATFTVTKGGRYQMQVELCNADGCS---TS-APVEVVVADTDGSHLAPLPY 120 (133)
T ss_dssp EEEEEE-S-EEEEEEEEEEETTEEE---E----EEEEEE-TTSTTS-----
T ss_pred eEEEEecCCCEEEEEEEEECCCCcc---cC-CCEEEEEeCCCccccccccC
Confidence 357899998777 57789999811 11 25578888999999998654
No 94
>COG1470 Predicted membrane protein [Function unknown]
Probab=44.40 E-value=1.3e+02 Score=30.38 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=50.0
Q ss_pred CCeeEEeeCC--CEEEEEEEecCCCc--eeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcE--EEEEEEeCC--CCc
Q 016876 19 ETVRFPVEAG--ETILLRIINSAMNQ--EHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQT--TNVLLTADQ--PPA 90 (381)
Q Consensus 19 ~~~~~~v~~G--k~yRlRlINa~~~~--~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeR--ydVlV~~~~--~~g 90 (381)
....+++++| +..|+++-|.|+.. -+.+.|++-.=+=|++|+.-+ +. |.|||| .++-|+++. .+|
T Consensus 387 g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~s--L~pge~~tV~ltI~vP~~a~aG 459 (513)
T COG1470 387 GPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----PS--LEPGESKTVSLTITVPEDAGAG 459 (513)
T ss_pred CcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----cc--cCCCCcceEEEEEEcCCCCCCC
Confidence 4477888888 56689999999654 477777777667788887633 22 345555 555666655 357
Q ss_pred cceeeeee
Q 016876 91 RYYMAAHA 98 (381)
Q Consensus 91 ~y~lr~~~ 98 (381)
+|.++...
T Consensus 460 dY~i~i~~ 467 (513)
T COG1470 460 DYRITITA 467 (513)
T ss_pred cEEEEEEE
Confidence 89887754
No 95
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.20 E-value=1e+02 Score=28.12 Aligned_cols=76 Identities=11% Similarity=0.169 Sum_probs=51.4
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.+++.+.+. +..|.|.+-+...++ ..-||....+.|.+
T Consensus 143 dn~lvlP~~~~v~~~itS~----DViHsf~vp~lg~k~----------------------------daiPG~~~~~~~~~ 190 (234)
T MTH00051 143 DNRLIVPIQTQVRVLVTAA----DVLHSFAVPSLSVKI----------------------------DAVPGRLNQTSFFI 190 (234)
T ss_pred ceEEEEecCcEEEEEEEeC----chhccccccccCcee----------------------------EccCCceEeEEEEe
Confidence 4567899999999999984 446666554443222 22367777889999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEec
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVEN 363 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~ 363 (381)
+.||.+-.-|.-.=-.. .-|-..++|.+
T Consensus 191 ~~~G~y~g~Cse~CG~~Hs~M~i~v~vv~ 219 (234)
T MTH00051 191 KRPGVFYGQCSEICGANHSFMPIVIEGVS 219 (234)
T ss_pred CCCEEEEEEChhhcCcccccCeeEEEEEC
Confidence 99999999997654332 34445555543
No 96
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.00 E-value=1.7e+02 Score=26.66 Aligned_cols=75 Identities=11% Similarity=0.164 Sum_probs=50.5
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.+++.+... +..|.|.+-+...++ ..-||....+.+.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~----DViHsf~iP~lg~k~----------------------------daiPG~~~~~~~~~ 186 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAE----DVLHSWTVPALGVKM----------------------------DAVPGRLNQATFII 186 (230)
T ss_pred CCeEEEecCCEEEEEEEcC----cccccccccccCcee----------------------------EecCCceEEEEEEe
Confidence 4567899999999999874 445655544443222 22467778888999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEe
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVE 362 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~ 362 (381)
+.||.+...|.-.-... .-|-..++|.
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M~~~v~vv 214 (230)
T MTH00185 187 SRPGLYYGQCSEICGANHSFMPIVVEAV 214 (230)
T ss_pred CCcEEEEEEchhhcCcCcCCCeEEEEEE
Confidence 99999999998754443 3344444443
No 97
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.67 E-value=86 Score=28.39 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=50.3
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.+++.+... +..|.|.+-.... .+|. -||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~tS~----DViHsf~vP~l~~-------------------------K~Da---iPG~~n~~~~~~ 186 (226)
T MTH00139 139 DNRLVLPYKSNIRALITAA----DVLHSWTVPSLGV-------------------------KIDA---VPGRLNQVGFFI 186 (226)
T ss_pred CceEEEecCCEEEEEEecC----ccccceeccccCc-------------------------cccC---CCCcEEEEEEEc
Confidence 4568899999999999864 4466655433221 2233 367888899999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEec
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVEN 363 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~ 363 (381)
+.||.+...|--.-=.. .-|-..++|.+
T Consensus 187 ~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 187 NRPGVFYGQCSEICGANHSFMPIVVEAIS 215 (226)
T ss_pred CCCEEEEEEChhhcCcCcCCCeEEEEEeC
Confidence 99999999996554322 23444444443
No 98
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=42.49 E-value=1e+02 Score=27.20 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=22.0
Q ss_pred EEEeccCcEEEEEEEeCCCCccceeeeeec
Q 016876 70 VIMIAPGQTTNVLLTADQPPARYYMAAHAY 99 (381)
Q Consensus 70 ~l~l~~GeRydVlV~~~~~~g~y~lr~~~~ 99 (381)
.+..-||..-.+-++++ .+|.|..+...+
T Consensus 148 k~da~PG~~~~~~~~~~-~~G~y~~~c~e~ 176 (201)
T TIGR02866 148 KIDAIPGQYNALWFNAD-EPGVYYGYCAEL 176 (201)
T ss_pred eEEecCCcEEEEEEEeC-CCEEEEEEehhh
Confidence 34566888888888877 678999887644
No 99
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.99 E-value=1.1e+02 Score=27.86 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=51.4
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.+++.+... +..|. |.|-+.| + ..| .-||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~----DViHs-------f~ip~~~-~-----------------k~d---a~PG~~~~~~~~~ 186 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAE----DVLHS-------WAVPALG-V-----------------KMD---AVPGRLNQTAFIA 186 (230)
T ss_pred cceEEEecCcEEEEEEEeC----ccccc-------eeccccC-C-----------------ccc---cCCCceEEEEEEe
Confidence 3467899999999999874 33444 5554433 1 112 2468888899999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEecC
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVENG 364 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~~ 364 (381)
+.||.+-..|.-.--.. ..|-..++|.+.
T Consensus 187 ~~~G~~~g~C~e~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 187 SRPGVFYGQCSEICGANHSFMPIVVEAVPL 216 (230)
T ss_pred CCceEEEEEChhhccccccCCcEEEEEECH
Confidence 99999999998754332 455555555443
No 100
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.81 E-value=1.1e+02 Score=27.85 Aligned_cols=76 Identities=12% Similarity=0.203 Sum_probs=51.0
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.+++.+... +..|.|-+-....+ +|. -||....+.|.+
T Consensus 139 dn~l~lP~~~~v~~~~tS~----DViHsf~vp~l~~k-------------------------~da---vPG~~~~~~~~~ 186 (227)
T MTH00154 139 DNRLVLPMNTQIRILITAA----DVIHSWTVPSLGVK-------------------------VDA---VPGRLNQLNFLI 186 (227)
T ss_pred cceEEEecCCEEEEEEEcC----chhhheeccccCCe-------------------------eec---CCCceEEEEEEE
Confidence 3567899999999999864 44666655443222 222 368888899999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEec
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVEN 363 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~ 363 (381)
+.||.+...|.-.-=.. .-|-..++|.+
T Consensus 187 ~~~G~y~g~Cse~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 187 NRPGLFFGQCSEICGANHSFMPIVIESVS 215 (227)
T ss_pred cCceEEEEEeechhCcCccCCeEEEEEeC
Confidence 99999999997554222 34555555543
No 101
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.73 E-value=1.2e+02 Score=27.66 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=52.0
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.+++.+... +..|.|.+-....++ |. -||....+.+.+
T Consensus 142 dn~l~lP~~~~v~~~itS~----DViHSf~vP~lg~K~-------------------------Da---vPGr~n~~~~~~ 189 (231)
T MTH00080 142 DNRCVLPCDTNIRFCITSS----DVIHSWALPSLSIKM-------------------------DA---MSGILSTLCYSF 189 (231)
T ss_pred eCceEeecCcEEEEEEEeC----cccccccccccCcee-------------------------ec---cCCceEEEEEEE
Confidence 4567899999999999874 456776655433222 22 357777889999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEecC
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVENG 364 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~~ 364 (381)
+.||.+.-.|--.-=.. ..|-..++|.+.
T Consensus 190 ~~~G~y~g~CsE~CG~~Hs~M~~~v~vv~~ 219 (231)
T MTH00080 190 PMPGVFYGQCSEICGANHSFMPIAVEVTLL 219 (231)
T ss_pred cCceEEEEEehhhcCcCccCCEEEEEEECH
Confidence 99999999996543111 456666665543
No 102
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=40.21 E-value=1.8e+02 Score=26.42 Aligned_cols=76 Identities=9% Similarity=0.135 Sum_probs=50.6
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.+++.+... +..|.|.+-....+ . ..-||....+.+.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~----DViHsf~ip~lg~k-------------------------~---daiPG~~~~~~~~~ 186 (227)
T MTH00098 139 DNRVVLPMEMPIRMLISSE----DVLHSWAVPSLGLK-------------------------T---DAIPGRLNQTTLMS 186 (227)
T ss_pred cceEEecCCCEEEEEEEEC----cccccccccccccc-------------------------e---ecCCCceEEEEEec
Confidence 3567899999999999874 34555444332211 1 22468888899999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEec
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVEN 363 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~ 363 (381)
+.||.+...|.-.-... .-|-..++|.+
T Consensus 187 ~~~G~~~g~Cse~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 187 TRPGLYYGQCSEICGSNHSFMPIVLELVP 215 (227)
T ss_pred CCcEEEEEECccccCcCcCCceEEEEEeC
Confidence 99999999998754443 34555555543
No 103
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=40.13 E-value=1.6e+02 Score=22.31 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=36.4
Q ss_pred EeeCCCEEE--EEEEecCCCce-eEEEEcCe---eEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeC-C-CCcccee
Q 016876 24 PVEAGETIL--LRIINSAMNQE-HFFGVANH---KLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTAD-Q-PPARYYM 94 (381)
Q Consensus 24 ~v~~Gk~yR--lRlINa~~~~~-~~~~idgh---~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~-~-~~g~y~l 94 (381)
.+..|++|. +.|.|.|.... |++..... .+.| +|. .-.|+||+..++-|++. . ..|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v--------~~~---~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSV--------EPP---SGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEE--------ECC---CCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 445677774 99999997642 44444331 1221 221 33589999988888887 3 3465543
No 104
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.01 E-value=1.4e+02 Score=27.03 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=50.2
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.+++.+... +..|.|.+-....++ ..-||....+.|.+
T Consensus 139 ~n~lvlP~~~~v~~~~tS~----DViHsf~vP~lg~K~----------------------------DavPG~~n~~~~~~ 186 (227)
T MTH00117 139 DHRMVIPMESPIRILITAE----DVLHSWAVPSLGVKT----------------------------DAVPGRLNQTSFIT 186 (227)
T ss_pred cceEEEecCceEEEEEEec----chhhcccccccCcee----------------------------EecCCceEEEEEEE
Confidence 4567899999999999874 345555443332221 22468888899999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEe
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVE 362 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~ 362 (381)
+.||.+...|--.--.. ..|-..++|.
T Consensus 187 ~~~G~y~g~CsE~CG~~Hs~M~~~v~vv 214 (227)
T MTH00117 187 TRPGVFYGQCSEICGANHSFMPIVVESV 214 (227)
T ss_pred cccceEEEEeccccccCccCCeEEEEEc
Confidence 99999999997655443 3344444443
No 105
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=37.75 E-value=1.6e+02 Score=21.37 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=30.0
Q ss_pred eeCCCEE--EEEEEecCCCc--eeEEEEcCeeEEEEeeCCCcc--CceEeeEEEeccCcEEE--EEEEeCC--CCcccee
Q 016876 25 VEAGETI--LLRIINSAMNQ--EHFFGVANHKLTVVGVDTSYT--KPFPTSVIMIAPGQTTN--VLLTADQ--PPARYYM 94 (381)
Q Consensus 25 v~~Gk~y--RlRlINa~~~~--~~~~~idgh~m~VIa~DG~~v--~P~~v~~l~l~~GeRyd--VlV~~~~--~~g~y~l 94 (381)
|++|+.. ++.+-|.+... .+.++++. =+|=.+ .|..+. .|.+||... +-|+... .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 4566555 57777888544 34444432 234333 344444 788997654 4444443 3689998
Q ss_pred eeee
Q 016876 95 AAHA 98 (381)
Q Consensus 95 r~~~ 98 (381)
.+..
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 106
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.74 E-value=1.7e+02 Score=26.52 Aligned_cols=76 Identities=12% Similarity=0.169 Sum_probs=51.1
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.+++.+... +..|.|.+-+...++ ..-||....+.+.+
T Consensus 139 ~n~l~lP~~~~v~~~~tS~----DViHsf~vP~lg~k~----------------------------da~PG~~n~~~~~~ 186 (228)
T MTH00076 139 DNRMVVPMESPIRMLITAE----DVLHSWAVPSLGIKT----------------------------DAIPGRLNQTSFIA 186 (228)
T ss_pred CceEEEecCCEEEEEEEec----cccccccccccCceE----------------------------EccCCcceeEEEEe
Confidence 4568899999999999874 446665554433222 12357777788999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEec
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVEN 363 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~ 363 (381)
+.||.+-..|.-.-... ..|-..++|.+
T Consensus 187 ~~~G~~~g~C~e~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 187 SRPGVYYGQCSEICGANHSFMPIVVEATP 215 (228)
T ss_pred CCcEEEEEEChhhcCccccCCceEEEEeC
Confidence 99999999998754332 44555555543
No 107
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=37.06 E-value=96 Score=29.69 Aligned_cols=74 Identities=9% Similarity=0.028 Sum_probs=49.3
Q ss_pred ceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEeC
Q 016876 257 KLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVAE 336 (381)
Q Consensus 257 ~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~~ 336 (381)
+.+.++.|+.|++.+... +..|+|.+-.--.++ | .-||-...+.|.++
T Consensus 151 NeL~iP~g~pV~f~lTS~----DViHSF~IP~Lg~K~-------------------------d---amPG~~n~l~~~a~ 198 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSN----SVMNSFFIPRLGSQI-------------------------Y---AMAGMQTRLHLIAN 198 (315)
T ss_pred ccEEEecCCEEEEEEEEc----hhhhhhhhhhhCCee-------------------------e---cCCCceeEEEEEcC
Confidence 357889999999999874 335655444222211 2 23678888999999
Q ss_pred CceeEEEEecchhhHh-ccceEEEEEe
Q 016876 337 NPGIWLLHCHIDSHLT-WGLAMAFLVE 362 (381)
Q Consensus 337 ~pG~w~~HCHi~~H~~-~Gm~~~~~v~ 362 (381)
.||.|.-.|-..-=.. ..|...+.+.
T Consensus 199 ~~G~Y~G~CaEyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 199 EPGTYDGISASYSGPGFSGMKFKAIAT 225 (315)
T ss_pred CCEEEEEEChhhcCccccCCeEEEEEE
Confidence 9999999996554222 4455555554
No 108
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=36.86 E-value=1.6e+02 Score=23.70 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=37.6
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCCCCccceeeee
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQPPARYYMAAH 97 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~ 97 (381)
++..++|++|.+++|.--..+. .|..+ +.++... ....+.+.+|+.|++-++ .+|.|.....
T Consensus 40 ~P~~ltV~~GdTVtw~~~~d~~---------~HnV~--s~~~~~f---~s~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~ 101 (115)
T TIGR03102 40 DPPAIRVDPGTTVVWEWTGEGG---------GHNVV--SDGDGDL---DESERVSEEGTTYEHTFE---EPGIYLYVCV 101 (115)
T ss_pred eCCEEEECCCCEEEEEECCCCC---------CEEEE--ECCCCCc---cccccccCCCCEEEEEec---CCcEEEEEcc
Confidence 6778999999988865322221 23222 2233222 123455678999999885 5688877754
No 109
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=36.58 E-value=65 Score=29.34 Aligned_cols=58 Identities=21% Similarity=0.352 Sum_probs=38.1
Q ss_pred CCCCcccCCcccCCCCCCeeEEeeCCCEEEEEEEecCCCc--eeEEEEcCeeEEEEeeCCCccC
Q 016876 3 FPSNAKVSDVTMNCNAETVRFPVEAGETILLRIINSAMNQ--EHFFGVANHKLTVVGVDTSYTK 64 (381)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~v~~Gk~yRlRlINa~~~~--~~~~~idgh~m~VIa~DG~~v~ 64 (381)
+||--+-||.+.++ ....+-+++| +|.||+|.-+-.. -...-|++ -+.++|+|+.+.+
T Consensus 78 YPC~~deNG~~i~~--s~tPLyl~aG-tY~F~~iSPAka~~~dgk~~I~N-GeYl~aTd~rytq 137 (310)
T PF15415_consen 78 YPCQFDENGKYINS--SSTPLYLNAG-TYYFRMISPAKASNSDGKMNIDN-GEYLYATDNRYTQ 137 (310)
T ss_pred eeeEEcCCCcEEec--cCCceEEecc-eEEEEEeccccccccCceEEeCC-ceEEEEcCCceeE
Confidence 45544446665543 3345778998 8999999766322 23344444 4789999999984
No 110
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=33.99 E-value=1.3e+02 Score=30.30 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=32.8
Q ss_pred CEEEEEEEecCCC-ceeEEEEcCeeEEEEeeCCCccC-ceEeeEEEeccCcEEEEEEEeC
Q 016876 29 ETILLRIINSAMN-QEHFFGVANHKLTVVGVDTSYTK-PFPTSVIMIAPGQTTNVLLTAD 86 (381)
Q Consensus 29 k~yRlRlINa~~~-~~~~~~idgh~m~VIa~DG~~v~-P~~v~~l~l~~GeRydVlV~~~ 86 (381)
..|+++|+|.+.. ..+.++++|.+ |..++ +. +.+.+.+||+.++-|...
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~-------~~~~~~~~--~~i~v~~g~~~~~~v~v~ 398 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLP-------GIKIEGPG--APIHVKAGEKVKLPVFLR 398 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCC-------CcEEEcCC--ceEEECCCCEEEEEEEEE
Confidence 4688999998865 45888877742 22221 11 278999999987666553
No 111
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=33.93 E-value=41 Score=29.75 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=21.0
Q ss_pred EEEeccCcEEEEEEEeCC-------CCccceeeeeec
Q 016876 70 VIMIAPGQTTNVLLTADQ-------PPARYYMAAHAY 99 (381)
Q Consensus 70 ~l~l~~GeRydVlV~~~~-------~~g~y~lr~~~~ 99 (381)
.-.|.+||.|||.|+..= +-|.|-+.....
T Consensus 50 ~~~l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l~ 86 (199)
T PF06775_consen 50 ARLLPPGQPYDVSVELELPESPYNRDLGMFMVSLELL 86 (199)
T ss_pred ccccCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEEE
Confidence 346789999999998743 235677766553
No 112
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=33.53 E-value=1.3e+02 Score=24.72 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=29.4
Q ss_pred EEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccC---c-eEeeEEEeccCcEEEE
Q 016876 30 TILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTK---P-FPTSVIMIAPGQTTNV 81 (381)
Q Consensus 30 ~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~---P-~~v~~l~l~~GeRydV 81 (381)
.|++||-|-+... +.+-....+|...||...+ + +.-..=.|.|||.|..
T Consensus 32 ~Y~ItI~N~~~~~---vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRVP---VQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCCC---EEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 5789999977543 5566667777766665321 1 1222335777876654
No 113
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=32.83 E-value=1.7e+02 Score=26.57 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=34.8
Q ss_pred CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEEe
Q 016876 19 ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTA 85 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~ 85 (381)
-+|.+++++|+.+.+|++..+.. -.|...+.-+-++..+-++..-..|.|..+.|.=+++.-
T Consensus 74 tPPl~rl~pg~~q~vRii~~~~l-----p~drEs~f~l~v~~IP~~~~~~~~l~ia~r~~iklfyRP 135 (230)
T PRK09918 74 TPPVARVEPGQSQQVRFILKSGS-----PLNTEHLLRVSFEGVPPKPGGKNKVVMPIRQDLPVLIQP 135 (230)
T ss_pred cCCeEEECCCCceEEEEEECCCC-----CCCeeEEEEEEEEEcCCCCCCCCEEEEEEEeEEEEEEeC
Confidence 57889999999999999976531 113233222233333322222234666665566555543
No 114
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.34 E-value=1.6e+02 Score=26.71 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=50.8
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|+.+++.+... +..|.|.+-.... ..|. -||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~tS~----DViHsf~vP~lg~-------------------------k~da---iPG~~n~~~~~~ 186 (225)
T MTH00168 139 DNRLVLPMDSKIRVLVTSA----DVLHSWTLPSLGL-------------------------KMDA---VPGRLNQLAFLS 186 (225)
T ss_pred cceEEEecCCEEEEEEEeC----Chhhccccccccc-------------------------cccC---CCCeEEEEEEEc
Confidence 4567899999999999874 4466665543211 1222 368888899999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEec
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVEN 363 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~ 363 (381)
+.||.+-..|.-.-=.. .-|-..++|.+
T Consensus 187 ~~~G~~~g~CsE~CG~~Hs~M~~~v~vv~ 215 (225)
T MTH00168 187 SRPGSFYGQCSEICGANHSFMPIVVEFVP 215 (225)
T ss_pred CCCEEEEEEcccccCcCcCCCeEEEEEeC
Confidence 99999999997654222 34555555543
No 115
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=32.23 E-value=56 Score=27.37 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=20.0
Q ss_pred eCCCcEEEEEEEe-CCc---eeEEEEecc
Q 016876 323 TPPGGWVAVRFVA-ENP---GIWLLHCHI 347 (381)
Q Consensus 323 v~~~~~~~i~f~~-~~p---G~w~~HCHi 347 (381)
|+||..++|.++. .|| |.|+|+|-.
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 5789999999953 355 999999864
No 116
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=31.18 E-value=1.1e+02 Score=23.32 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=24.9
Q ss_pred EEEEEEEecCCCceeEEEEcCeeEEEEeeCCCcc--C-c-eEeeEEEeccCcEEEE
Q 016876 30 TILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT--K-P-FPTSVIMIAPGQTTNV 81 (381)
Q Consensus 30 ~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v--~-P-~~v~~l~l~~GeRydV 81 (381)
.|++||-|.+... +.+-.....|...||..- + + +.-+.=.|.|||.|..
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 5899999998873 444455555555555221 0 0 1112335778886544
No 117
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=30.61 E-value=1.2e+02 Score=26.66 Aligned_cols=58 Identities=7% Similarity=-0.157 Sum_probs=39.7
Q ss_pred CcccCCcc-cCCCCCC---eeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCcc
Q 016876 6 NAKVSDVT-MNCNAET---VRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT 63 (381)
Q Consensus 6 ~~~~~~~~-~~~~~~~---~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v 63 (381)
.|.+.|.+ +...++. ...=...+.+|+++|.+.-+.....+..++-.++++..||...
T Consensus 47 ~w~~~Gria~~~~~~~~sa~~~W~q~~~~~~l~l~~plG~~~~~i~~~~~~~tL~~~~g~~~ 108 (202)
T PRK00022 47 QYQTRGRFAYISPQQRVSARFDWQQRGDRYRLLLTSPLGSTELELTGRPGGATLEDNKGQRY 108 (202)
T ss_pred ceEEEEEEEEECCCceEEEEEEEEEcCCeeEEEEEccCCccEEEEEEcCCEEEEEECCCCEE
Confidence 57777776 3222211 1233344588999999988888888888888888888887655
No 118
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=29.27 E-value=1.2e+02 Score=23.69 Aligned_cols=39 Identities=26% Similarity=0.197 Sum_probs=32.0
Q ss_pred eEEeCCCcEEEEEEEeCCceeEEEEecchhhHhccc--eEEEEE
Q 016876 320 TIGTPPGGWVAVRFVAENPGIWLLHCHIDSHLTWGL--AMAFLV 361 (381)
Q Consensus 320 tv~v~~~~~~~i~f~~~~pG~w~~HCHi~~H~~~Gm--~~~~~v 361 (381)
...|.+|+...+.|..+-.|.-+|.|++.+ .|+ ...|.|
T Consensus 28 ~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~---~~~~~~~~f~v 68 (110)
T PF05938_consen 28 WHVLKPGQSYSFSFRDNFFGTTLFWCHFRW---PGGKYHHSFDV 68 (110)
T ss_pred CEECCCCCEEEEEEecCcCCceeEEEEEEE---CCccEEEEEEE
Confidence 456888999999999888899999999999 454 666665
No 119
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=29.01 E-value=2.2e+02 Score=26.29 Aligned_cols=32 Identities=34% Similarity=0.449 Sum_probs=24.1
Q ss_pred eEEEeccCcEEEEEEEeCCCCccceeeeeeccc
Q 016876 69 SVIMIAPGQTTNVLLTADQPPARYYMAAHAYNT 101 (381)
Q Consensus 69 ~~l~l~~GeRydVlV~~~~~~g~y~lr~~~~~~ 101 (381)
-.+..-||+.++..++++ ++|.|..+...+.+
T Consensus 167 ~k~d~iPG~~~~~~~~~~-~~G~Y~g~Cae~CG 198 (247)
T COG1622 167 GKIDAIPGMTTELWLTAN-KPGTYRGICAEYCG 198 (247)
T ss_pred ceeeecCCceEEEEEecC-CCeEEEEEcHhhcC
Confidence 344455889999999988 77999999865543
No 120
>PF14321 DUF4382: Domain of unknown function (DUF4382)
Probab=28.84 E-value=3.2e+02 Score=22.41 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=32.4
Q ss_pred eeEEeeCCCEEEEEEEecCCCceeEEEEcCe--eEEEEeeCCCccCceEeeEEEeccCcEEEEEEEeCC
Q 016876 21 VRFPVEAGETILLRIINSAMNQEHFFGVANH--KLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLTADQ 87 (381)
Q Consensus 21 ~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh--~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~~~~ 87 (381)
....+++|+-..+||.=..+. +.++|. .+++=...-.-+ .....+.+.+|+.++++++++-
T Consensus 61 ~~~~lpaG~Y~~irl~l~~~~----v~~~g~~~~l~vps~~~~gl--k~~~~~~v~~g~~~~~vlDFDl 123 (139)
T PF14321_consen 61 ADAELPAGTYNQIRLVLDDAN----VVINGTTYPLKVPSGQQKGL--KLNGNFTVSAGGSYDLVLDFDL 123 (139)
T ss_pred eccccCCCcEEEEEEEEeCCe----EEECCEEEEEEcCCCCccee--EEcCCeEEcCCCEEEEEEEEec
Confidence 356677776446776655433 333332 222211100001 1124677889999999999874
No 121
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=27.89 E-value=54 Score=24.61 Aligned_cols=12 Identities=42% Similarity=0.559 Sum_probs=5.9
Q ss_pred CeeEEEEeeCCC
Q 016876 50 NHKLTVVGVDTS 61 (381)
Q Consensus 50 gh~m~VIa~DG~ 61 (381)
.|+++|+..+|.
T Consensus 72 ~h~l~vvD~~G~ 83 (89)
T PF06832_consen 72 EHTLTVVDAQGR 83 (89)
T ss_pred eEEEEEEcCCCC
Confidence 345555555444
No 122
>PF09937 DUF2169: Uncharacterized protein conserved in bacteria (DUF2169); InterPro: IPR018683 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=27.78 E-value=1.2e+02 Score=28.68 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=50.7
Q ss_pred CCCCC-cccCCcccCCCC--CCeeEEeeCCCEEEEEEEecCCCce-eEEEEcCeeEEEEe---eCCCcc-CceEeeEEEe
Q 016876 2 RFPSN-AKVSDVTMNCNA--ETVRFPVEAGETILLRIINSAMNQE-HFFGVANHKLTVVG---VDTSYT-KPFPTSVIMI 73 (381)
Q Consensus 2 ~~~~~-~~~~~~~~~~~~--~~~~~~v~~Gk~yRlRlINa~~~~~-~~~~idgh~m~VIa---~DG~~v-~P~~v~~l~l 73 (381)
|||-- -+|+-.+|||.. +...-.++.|+ +++|.|...... +.|.+.+..+.+.- .+|..+ .+...|+|.|
T Consensus 208 ~~P~lP~DfD~r~fn~Ap~dq~~~~~l~gge--~i~L~gl~p~~~~~~~~LP~~~~~~~~~~~~~~~~~~~~~~ldTv~i 285 (297)
T PF09937_consen 208 RAPGLPDDFDPRFFNAAPPDQQLPGPLRGGE--RIELEGLHPEGPVLRFRLPGLRPRAFVRRRRDGRREEVPLRLDTVWI 285 (297)
T ss_pred cCCCCcccCCHHHHccCCHHHccCCCCCCCc--eEEEeeecCCCCeEEEECCCCCceEEEEEcCCCceeeecccccEEEE
Confidence 44442 257778899987 22223346665 677788888766 99999999755333 455555 3778899998
Q ss_pred ccCcE
Q 016876 74 APGQT 78 (381)
Q Consensus 74 ~~GeR 78 (381)
-+.+|
T Consensus 286 ~pd~~ 290 (297)
T PF09937_consen 286 DPDER 290 (297)
T ss_pred ECCCC
Confidence 77765
No 123
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=27.43 E-value=1.4e+02 Score=23.44 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=26.5
Q ss_pred ceEeeEEEeccCcEEEEEEEeCCCCccceeeeee
Q 016876 65 PFPTSVIMIAPGQTTNVLLTADQPPARYYMAAHA 98 (381)
Q Consensus 65 P~~v~~l~l~~GeRydVlV~~~~~~g~y~lr~~~ 98 (381)
+...+.+...-.-|..++|-++-++|.|.|.+..
T Consensus 52 ~v~~~~i~~N~ps~l~~~lPa~L~~G~Y~l~V~T 85 (102)
T PF14734_consen 52 KVPCSSIVRNKPSRLIFILPADLAAGEYTLEVRT 85 (102)
T ss_pred EecHHHeEeCCCcEEEEECcCccCceEEEEEEEE
Confidence 4455567888888999999877678999988764
No 124
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=27.38 E-value=80 Score=29.17 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=24.9
Q ss_pred CCeeEEeeCCCEEEEEEEecCC-------CceeEEEEcCee
Q 016876 19 ETVRFPVEAGETILLRIINSAM-------NQEHFFGVANHK 52 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~-------~~~~~~~idgh~ 52 (381)
-+|.|++++|++..+||+..+. ...|+|.+.+.+
T Consensus 84 tPPlfrl~p~~~q~lRI~~~~~~~lP~DRESlf~lnv~eIP 124 (253)
T PRK15249 84 TPPVFRIQPKAGQVVRVIYNNTKKLPQDRESVFWFNVLQVP 124 (253)
T ss_pred cCCeEEecCCCceEEEEEEcCCCCCCCCceEEEEEEeeecC
Confidence 5778999999999999998753 134666655443
No 125
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=26.34 E-value=79 Score=29.05 Aligned_cols=22 Identities=5% Similarity=0.086 Sum_probs=19.4
Q ss_pred CCeeEEeeCCCEEEEEEEecCC
Q 016876 19 ETVRFPVEAGETILLRIINSAM 40 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~ 40 (381)
-+|.+++++|+...+||+..+.
T Consensus 80 tPPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 80 TPPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred cCCeEEECCCCccEEEEEeCCC
Confidence 5678999999999999998875
No 126
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=26.25 E-value=1.5e+02 Score=25.28 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=37.7
Q ss_pred CEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCcc-----CceEeeEEEeccCcE
Q 016876 29 ETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYT-----KPFPTSVIMIAPGQT 78 (381)
Q Consensus 29 k~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v-----~P~~v~~l~l~~GeR 78 (381)
++-+|+++|+|....+.+.=++.....+...|.++ .++....+.+.+|.|
T Consensus 72 ~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~l~~gd~ 126 (193)
T PF07228_consen 72 ETGTLTYANAGHPPPLLLRPGGREIEQLESEGPPLGIFEDIDYQEQEIQLEPGDR 126 (193)
T ss_dssp TTTEEEEEEESSSEEEEEETTCTEEEEETCSSBBCSSSCTTCEEEEEEE--TTEE
T ss_pred cceEEEEeCCCCCCEEEEeccccceeecccCccceeeeccccccceEEEeccccE
Confidence 34589999999998887777678888888888886 246677788888776
No 127
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=25.93 E-value=84 Score=28.45 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.4
Q ss_pred CCeeEEeeCCCEEEEEEEecCC
Q 016876 19 ETVRFPVEAGETILLRIINSAM 40 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~ 40 (381)
-+|.+++++|++..+|++..+.
T Consensus 75 tPPl~rl~p~~~q~lRI~~~~~ 96 (227)
T PRK15299 75 TPPLFRLNGGQKNVLRIIRTGG 96 (227)
T ss_pred cCCeEEECCCCccEEEEEECCC
Confidence 5788999999999999998864
No 128
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.65 E-value=2.1e+02 Score=26.66 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=50.8
Q ss_pred cceEEeecCCEEEEEEeecCCcCCCCCceeecCccEEEEEcCCCCCCCCCCCCccCCCCCCccceEEeCCCcEEEEEEEe
Q 016876 256 TKLYKLKFGSRVQIVFQDTSIVSVEDHPMHLHGHEFYVVGSGLGNFNPSTDTAKFNLIDPPRRNTIGTPPGGWVAVRFVA 335 (381)
Q Consensus 256 ~~~~~~~~g~~v~~~i~n~~~~~~~~Hp~HlHG~~f~v~~~~~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~i~f~~ 335 (381)
++.+.++.|..+++.+... +..|.|.+-.... .+|. -||....+.|.+
T Consensus 173 dn~lvlP~~~~v~~~ltS~----DViHSf~vP~lgv-------------------------K~Da---iPGr~n~~~~~~ 220 (262)
T MTH00027 173 DNRLILPVDTNVRVLITAA----DVLHSWTVPSLAV-------------------------KMDA---VPGRINETGFLI 220 (262)
T ss_pred eceEEEeeCcEEEEEEEcC----ccccceecccccC-------------------------cccC---CCCceeeEEEEc
Confidence 3567899999999999864 4456655433211 1222 357777789999
Q ss_pred CCceeEEEEecchhhHh-ccceEEEEEecC
Q 016876 336 ENPGIWLLHCHIDSHLT-WGLAMAFLVENG 364 (381)
Q Consensus 336 ~~pG~w~~HCHi~~H~~-~Gm~~~~~v~~~ 364 (381)
+.||.+.-.|.-.-=.. ..|-..++|.+.
T Consensus 221 ~~~G~y~g~CsE~CG~~Hs~Mpi~v~vv~~ 250 (262)
T MTH00027 221 KRPGIFYGQCSEICGANHSFMPIVVESVSL 250 (262)
T ss_pred CCcEEEEEEcchhcCcCcCCCeEEEEEECH
Confidence 99999999997664222 456666665443
No 129
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=25.52 E-value=1.1e+02 Score=19.47 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=14.8
Q ss_pred CeeEEeeCCCEEEEEEEecC
Q 016876 20 TVRFPVEAGETILLRIINSA 39 (381)
Q Consensus 20 ~~~~~v~~Gk~yRlRlINa~ 39 (381)
....-.-.|+.||||+-.++
T Consensus 13 ~ev~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 13 REVRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp SEEEEEETTEEEEEEEETTT
T ss_pred CEEEEEeCCeEEEeeEccCC
Confidence 44566678999999987554
No 130
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=25.27 E-value=1e+02 Score=28.00 Aligned_cols=34 Identities=21% Similarity=0.153 Sum_probs=24.9
Q ss_pred CCeeEEeeCCCEEEEEEEecCCC------ceeEEEEcCee
Q 016876 19 ETVRFPVEAGETILLRIINSAMN------QEHFFGVANHK 52 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~------~~~~~~idgh~ 52 (381)
-+|.+++++|+++.+|++..+.. +.|+|.+.+.+
T Consensus 76 tPPlfrl~p~~~q~lRIi~~~~~LP~DrESlf~Lnv~eIP 115 (229)
T PRK15195 76 TPPLFVSEPKSENTLRIIYAGPPLAADRESLFWMNVKAIP 115 (229)
T ss_pred cCCeEEECCCCceEEEEEECCCCCCCCeeEEEEEEeeecC
Confidence 57789999999999999987642 23556555443
No 131
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=24.94 E-value=2.6e+02 Score=28.21 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=28.9
Q ss_pred eEEeCCCcEEEEEEEeCCceeEEEEecchhhHh-ccceEEEEE
Q 016876 320 TIGTPPGGWVAVRFVAENPGIWLLHCHIDSHLT-WGLAMAFLV 361 (381)
Q Consensus 320 tv~v~~~~~~~i~f~~~~pG~w~~HCHi~~H~~-~Gm~~~~~v 361 (381)
.+.+.|....++.|.++-||.|++-|.-.-|+. .-|.+.++|
T Consensus 593 ~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rmlv 635 (637)
T COG4263 593 NMEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRMLV 635 (637)
T ss_pred EEEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccceee
Confidence 455667888889999999999998874443332 344444444
No 132
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=23.56 E-value=1.9e+02 Score=20.97 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=10.1
Q ss_pred eeEEEEcCeeEEEEeeCCCccC
Q 016876 43 EHFFGVANHKLTVVGVDTSYTK 64 (381)
Q Consensus 43 ~~~~~idgh~m~VIa~DG~~v~ 64 (381)
.+.+.+.+..-.-|..||..+.
T Consensus 39 ~~~i~iGna~~v~v~~nG~~~~ 60 (77)
T PF13464_consen 39 PFRIRIGNAGAVEVTVNGKPVD 60 (77)
T ss_pred CEEEEEeCCCcEEEEECCEECC
Confidence 3444444444444445555543
No 133
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=21.75 E-value=3.3e+02 Score=21.65 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=27.5
Q ss_pred eEEEEeeCCCccCce----EeeEEEeccCcEEEEEEEeCC--CCccceeeeee
Q 016876 52 KLTVVGVDTSYTKPF----PTSVIMIAPGQTTNVLLTADQ--PPARYYMAAHA 98 (381)
Q Consensus 52 ~m~VIa~DG~~v~P~----~v~~l~l~~GeRydVlV~~~~--~~g~y~lr~~~ 98 (381)
.+.|...||..|--. ....+....++++.+.++.+. .+|.|.|.+..
T Consensus 55 ~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 55 GFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp EEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEEEE
Confidence 467777888776211 122444444999999998876 58999998865
No 134
>PF03550 LolB: Outer membrane lipoprotein LolB; InterPro: IPR004565 This protein, LolB, is known so far only in the gamma subdivision of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. In Escherichia coli, lipoproteins are anchored to the periplasmic side of either the inner or outer membrane through N-terminal lipids, depending on the lipoprotein-sorting signal present at position 2 []. Five Lol proteins are involved in the sorting and outer membrane localization of lipoproteins. LolCDE, an ATP binding cassette (ABC) transporter, in the inner membrane releases outer membrane-directed lipoproteins from the inner membrane in an ATP-dependent manner, leading to the formation of a water-soluble complex between the lipoprotein and LolA. The LolA-lipoprotein complex crosses the periplasm and then interacts with outer membrane receptor LolB, which is essential for the anchoring of lipoproteins to the outer membrane.; GO: 0015031 protein transport, 0009279 cell outer membrane; PDB: 1IWM_B 1IWN_A.
Probab=21.04 E-value=1.7e+02 Score=24.71 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=37.6
Q ss_pred CcccCCcc-cCCCC----CCeeEEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEeeCCCccC
Q 016876 6 NAKVSDVT-MNCNA----ETVRFPVEAGETILLRIINSAMNQEHFFGVANHKLTVVGVDTSYTK 64 (381)
Q Consensus 6 ~~~~~~~~-~~~~~----~~~~~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~~v~ 64 (381)
.|.+.|++ +.... ......-. +..|+|+|.+--+....++..+....+++..||....
T Consensus 4 ~w~~~Gr~av~~~~~~~sa~f~W~q~-~~~~~l~L~~PlG~~~~~l~~~~~~~~L~~~~g~~~~ 66 (157)
T PF03550_consen 4 QWQLSGRIAVRTPDQSGSANFNWQQQ-PDQYRLRLSSPLGQTVARLEGDPQGATLIDSDGQTYQ 66 (157)
T ss_dssp EEEEEEEEEEE-SS-EEEEEEEEEEE-TTEEEEEEE-TTS-EEEEEEEETTEEEEE-TTS-EEE
T ss_pred ceEEEEEEEEECCCceEEEEEEEEEc-CCccEEEEECCCCccEEEEEECCCEEEEEECCCcEEe
Confidence 46666665 22111 34445545 7899999999888888888888888888888887653
No 135
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=20.99 E-value=1.6e+02 Score=22.15 Aligned_cols=41 Identities=10% Similarity=0.134 Sum_probs=25.3
Q ss_pred EEeeCCCEEEEEEEecCCCceeEEEEcCeeEEEEe-eCCCcc
Q 016876 23 FPVEAGETILLRIINSAMNQEHFFGVANHKLTVVG-VDTSYT 63 (381)
Q Consensus 23 ~~v~~Gk~yRlRlINa~~~~~~~~~idgh~m~VIa-~DG~~v 63 (381)
-.++||++.+|.+=..+....+++..+..+..++- .||.+.
T Consensus 41 ~~L~pGq~l~f~~d~~g~L~~L~~~~~~~~~~~~R~~DG~f~ 82 (85)
T PF04225_consen 41 TRLKPGQTLEFQLDEDGQLTALRYERSPKTTLYTRQSDGSFS 82 (85)
T ss_dssp GG--TT-EEEEEE-TTS-EEEEEEEEETTEEEEEE-TTS-EE
T ss_pred hhCCCCCEEEEEECCCCCEEEEEEEcCCcEEEEEEeCCCCEE
Confidence 35789999999987777778888888776544443 578764
No 136
>PRK10183 hypothetical protein; Provisional
Probab=20.67 E-value=1.5e+02 Score=20.56 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=16.2
Q ss_pred CCeeEEeeCCCEEEEEEEecC
Q 016876 19 ETVRFPVEAGETILLRIINSA 39 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~ 39 (381)
....+-.-.|+.||||+--++
T Consensus 30 ~~~v~I~H~G~~Y~LR~Tr~G 50 (56)
T PRK10183 30 DGKVIIDHDGQEYLLRKTQAG 50 (56)
T ss_pred CCEEEEEECCcEEEeEEccCC
Confidence 455677788999999987654
No 137
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=20.59 E-value=4.1e+02 Score=20.55 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=17.4
Q ss_pred cCCcccCCCCCCeeEEeeCCCEEEEEEEecC
Q 016876 9 VSDVTMNCNAETVRFPVEAGETILLRIINSA 39 (381)
Q Consensus 9 ~~~~~~~~~~~~~~~~v~~Gk~yRlRlINa~ 39 (381)
+-|.+-..++.+.+.-.+-|+.|++.++--+
T Consensus 15 ~~G~W~Sv~~~P~v~I~r~g~~Y~vti~~~~ 45 (95)
T PF12992_consen 15 ICGEWESVNGKPDVTIYRNGGSYKVTITYRS 45 (95)
T ss_pred eEEEeEccCCCCCEEEEECCCeEEEEEEEEc
Confidence 3344444444444455566788888776544
No 138
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=20.39 E-value=1.6e+02 Score=23.29 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=24.8
Q ss_pred CCeeEEeeCCCEEEEEEEecCCC-----ceeEEEEcCee
Q 016876 19 ETVRFPVEAGETILLRIINSAMN-----QEHFFGVANHK 52 (381)
Q Consensus 19 ~~~~~~v~~Gk~yRlRlINa~~~-----~~~~~~idgh~ 52 (381)
-++.+.+++|++..+||+..+.. ..|+|.+....
T Consensus 54 sPp~~~L~pg~~q~vRv~~~~~~~~~~E~~yrl~~~~iP 92 (122)
T PF00345_consen 54 SPPIFRLEPGESQTVRVYRGSKLPIDRESLYRLSFREIP 92 (122)
T ss_dssp ESSEEEEETTEEEEEEEEECSGS-SSS-EEEEEEEEEEE
T ss_pred eCCceEeCCCCcEEEEEEecCCCCCCceEEEEEEEEEEe
Confidence 56789999999999999885441 34666665543
No 139
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=20.20 E-value=2.8e+02 Score=18.49 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=15.9
Q ss_pred EEEEEEEecCCCceeEEEEcCeeEEEEeeCCC
Q 016876 30 TILLRIINSAMNQEHFFGVANHKLTVVGVDTS 61 (381)
Q Consensus 30 ~yRlRlINa~~~~~~~~~idgh~m~VIa~DG~ 61 (381)
.++|||.--+.. +.+.|+.++++|....|.
T Consensus 9 ~l~F~~~~rg~~--l~v~i~~~~v~v~~~~g~ 38 (54)
T PF03633_consen 9 SLSFRLRYRGHW--LEVEITHEKVTVTLLSGD 38 (54)
T ss_dssp EEEEEEEETTEE--EEEEEETTEEEEEEEESS
T ss_pred EeEEEEEECCEE--EEEEEECCEEEEEEccCC
Confidence 345554444322 556666666666555554
No 140
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=20.02 E-value=2.5e+02 Score=23.14 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=35.8
Q ss_pred CEEEEEEEecCCCcee---EEEEcCeeEEEEeeCCCccCceEeeEEEeccCcEEEEEEE
Q 016876 29 ETILLRIINSAMNQEH---FFGVANHKLTVVGVDTSYTKPFPTSVIMIAPGQTTNVLLT 84 (381)
Q Consensus 29 k~yRlRlINa~~~~~~---~~~idgh~m~VIa~DG~~v~P~~v~~l~l~~GeRydVlV~ 84 (381)
+++-++|+|-.....+ +..+..-+|.--.-....+.|..++.+.|.+|+.+.|---
T Consensus 2 qwv~i~I~n~~~~~~l~i~Na~L~~GKfy~~~~kd~eis~~~v~~~~i~~~~~~~i~sc 60 (131)
T PF06355_consen 2 QWVSIHIVNNLGSGDLKIKNAQLSWGKFYRDGNKDDEISPDDVNGIVIPPGGSYSICSC 60 (131)
T ss_pred cEEEEEEEeCCCCccEEEEccEeccCccccCCCcCCEeCccccCceEecCCCeEEEEEe
Confidence 5677889886554322 2234444555444444456788889999999999876553
Done!