BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016877
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/294 (21%), Positives = 108/294 (36%), Gaps = 40/294 (13%)
Query: 89 PATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN 148
P + + + W ++ R D A + N++Y+ G S + +D YN +
Sbjct: 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGG--SQLFPIKRMDCYNVVKD 80
Query: 149 TWGGRFD--MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTF-VLDTETKKWQDL 205
+W + PR+ S +G+ IY G + + F DT T+ W
Sbjct: 81 SWYSKLGPPTPRD---SLAACAAEGK-IYTSGGS---EVGNSALYLFECYDTRTESWHTK 133
Query: 206 PPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRG 265
P + R + G ++V GGS N + V + S V D P + W P+
Sbjct: 134 PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN-SCEVYD--PATETWTELCPMIEA 190
Query: 266 GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSM 325
+ V V D++ +GGQ G + V Y D+ + +WK++ M
Sbjct: 191 RKNHGLVFVKDKIFAVGGQNG------------LGGLDNVEYYDIKL----NEWKMVSPM 234
Query: 326 PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNA 379
P W V VG + + +G I ++N T V N+
Sbjct: 235 P---------WKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANS 279
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 12/143 (8%)
Query: 110 VPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169
VPR A ++ L+Y GY S+++ YN +D TW D+ ++ S L
Sbjct: 14 VPRGSHMAPKVGRLIYTAGGY--FRQSLSYLEAYNPSDGTWLRLADL--QVPRSGLAGCV 69
Query: 170 DGRYIYVVTGQY-GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMG 228
G +Y V G+ P ++ + T +W P+ VPR + G ++ +G
Sbjct: 70 VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVG 129
Query: 229 GS-------GENRYTPEVDHWSL 244
GS RY PE D W L
Sbjct: 130 GSHGCIHHNSVERYEPERDEWHL 152
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 98 PELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
PE + A + R G + + N LLY G+ + ++S + Y N W R
Sbjct: 145 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEW--RMIT 201
Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
S G+ IY G Y Q + + + D ET+ W + P+ R A
Sbjct: 202 AMNTIRSGAGVCVLHNCIYAA-GGYDGQDQLNSVERY--DVETETWTFVAPMKHRRSALG 258
Query: 217 TQLWRGRLHVMGGSGENR-------YTPEVDHWS 243
+ +GR++V+GG + Y P+ D WS
Sbjct: 259 ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 292
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 110 VPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169
VPR A ++ L+Y GY S+++ YN +D TW D+ ++ S L
Sbjct: 14 VPR-GSHAPKVGRLIYTAGGY--FRQSLSYLEAYNPSDGTWLRLADL--QVPRSGLAGCV 68
Query: 170 DGRYIYVVTGQY-GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMG 228
G +Y V G+ P ++ + T +W P+ VPR + G ++ +G
Sbjct: 69 VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVG 128
Query: 229 GS-------GENRYTPEVDHWSL 244
GS RY PE D W L
Sbjct: 129 GSHGCIHHNSVERYEPERDEWHL 151
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 14/154 (9%)
Query: 98 PELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
PE + A + R G + + N LLY G+ + ++S + Y N W R
Sbjct: 144 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEW--RMIT 200
Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
S G+ IY G Y Q + + + D ET+ W + P+ R A
Sbjct: 201 AMNTIRSGAGVCVLHNCIYAA-GGYDGQDQLNSVERY--DVETETWTFVAPMKHRRSALG 257
Query: 217 TQLWRGRLHVMGGSGENR-------YTPEVDHWS 243
+ +GR++V+GG + Y P+ D WS
Sbjct: 258 ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS 291
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 123 LLYVFAGYG-SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQY 181
LLY GY + S V+ YN T N W +M + + +G++ + +Y V G
Sbjct: 157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNN--LLYAVGGHD 214
Query: 182 GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-------SGENR 234
GP R V D T W+ + + + R G L+V+GG +
Sbjct: 215 GPLVRKSVE---VYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEY 271
Query: 235 YTPEVDHWSL 244
Y P D W++
Sbjct: 272 YNPTTDKWTV 281
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 81 DVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHV 140
DV ++ L +T + A +W + R + NLLY G+ V V
Sbjct: 165 DVASRQCL-STVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDG-PLVRKSV 222
Query: 141 DIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGP 183
++Y+ T N W DM M + G+ +YVV G G
Sbjct: 223 EVYDPTTNAWRQVADM--NMCRRNAGVCAVNGLLYVVGGDDGS 263
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 62/159 (38%), Gaps = 19/159 (11%)
Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
+W + R + ++Y GY ++ ++S V+ Y+ W M +
Sbjct: 139 QWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNS-VEKYDPHTGHWTNVTPMATKR 197
Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDT---ETKKWQDLPPLPVPRYAPAT 217
+ + + ++ D +IYVV G G TAH ++ T W + + PR
Sbjct: 198 SGAGVALLND--HIYVVGGFDG------TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGA 249
Query: 218 QLWRGRLHVMGGSGENR-------YTPEVDHWSLAVKDG 249
+ RGRL+ + G N Y P +D W + G
Sbjct: 250 TVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMG 288
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 13/188 (6%)
Query: 102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMA 161
W + V R A + +++YV G+ H+ ++ Y+ + W DM + A
Sbjct: 93 WYSVAPMNVRRGLAGATTLGDMIYVSGGFDG-SRRHTSMERYDPNIDQWSMLGDM--QTA 149
Query: 162 HSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWR 221
G+V IY + G G D T W ++ P+ R L
Sbjct: 150 REGAGLVVASGVIYCLGGYDGLNILNSVEK---YDPHTGHWTNVTPMATKRSGAGVALLN 206
Query: 222 GRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVI 281
++V+GG + V+ +++ + T + PR + V+ RL I
Sbjct: 207 DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV-----TSMTTPR--CYVGATVLRGRLYAI 259
Query: 282 GGQEGDFM 289
G +G+ +
Sbjct: 260 AGYDGNSL 267
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 12/197 (6%)
Query: 88 LPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYG-SIDYVHSHVDIYNFT 146
L + F L +W + P R ++ + +YV AG + V Y+
Sbjct: 76 LQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPV 135
Query: 147 DNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP 206
W ++P ++ + H +++ IY + G+ + T F+ + + W+DL
Sbjct: 136 AAKWSEVKNLPIKV-YGH-NVISHNGMIYCLGGKTDD--KKCTNRVFIYNPKKGDWKDLA 191
Query: 207 PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG 266
P+ PR + +G++ + GG E+ + V+ + L +W P+
Sbjct: 192 PMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKT-------NKWEVMTEFPQER 244
Query: 267 PHRACVVVDDRLLVIGG 283
+ V + L IGG
Sbjct: 245 SSISLVSLAGSLYAIGG 261
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 77/200 (38%), Gaps = 27/200 (13%)
Query: 156 MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGP---TAHTFVLDTETKKWQDLPPLPVPR 212
+ ++ +H +VT +YVV G Y + ++ F LD + +W LPPLP R
Sbjct: 41 LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100
Query: 213 YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV 272
+++V+ G E S+ D P+ +W +P +
Sbjct: 101 CLFGLGEVDDKIYVVAG---KDLQTEASLDSVLCYD--PVAAKWSEVKNLPIKVYGHNVI 155
Query: 273 VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSH 331
+ + +GG+ D KC+ R V++ + + WK L M P S
Sbjct: 156 SHNGMIYCLGGKTDD---------KKCTNR-------VFIYNPKKGDWKDLAPMKTPRSM 199
Query: 332 IEFAWVLVNNSIVIVGGTTE 351
F + IVI GG TE
Sbjct: 200 --FGVAIHKGKIVIAGGVTE 217
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 13/143 (9%)
Query: 110 VPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169
VPR A ++ L+Y GY S+++ YN ++ TW D+ ++ S L
Sbjct: 14 VPR-GSHAPKVGRLIYTAGGY--FRQSLSYLEAYNPSNGTWLRLADL--QVPRSGLAGCV 68
Query: 170 DGRYIYVVTGQY-GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMG 228
G +Y V G+ P ++ + T +W P VPR + G ++ +G
Sbjct: 69 VGGLLYAVGGRNNSPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVG 128
Query: 229 GS-------GENRYTPEVDHWSL 244
GS RY PE D W L
Sbjct: 129 GSHGCIHHNSVERYEPERDEWHL 151
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 14/158 (8%)
Query: 98 PELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
PE + A + R G + + N LLY G+ + ++S + Y N W R
Sbjct: 144 PERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEW--RXIT 200
Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
S G+ IY G Y Q + + + D ET+ W + P R A
Sbjct: 201 AXNTIRSGAGVCVLHNCIYAA-GGYDGQDQLNSVERY--DVETETWTFVAPXKHRRSALG 257
Query: 217 TQLWRGRLHVMGGSGENR-------YTPEVDHWSLAVK 247
+ +GR++V+GG + Y P+ D WS +
Sbjct: 258 ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR 295
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 14/158 (8%)
Query: 98 PELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
PE + A + R G + + N LLY G+ + ++S + Y N W R
Sbjct: 137 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEW--RMIT 193
Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
P S G+ IY G Y Q + + + D ET+ W + P+ R A
Sbjct: 194 PMNTIRSGAGVCVLHNCIYAAGG-YDGQDQLNSVERY--DVETETWTFVAPMRHHRSALG 250
Query: 217 TQLWRGRLHVMGG-------SGENRYTPEVDHWSLAVK 247
+ +G+++V+GG Y P+ D WS +
Sbjct: 251 ITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTR 288
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 12/136 (8%)
Query: 117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYV 176
A ++ L+Y GY S+++ YN ++ +W D+ ++ S L G +Y
Sbjct: 13 APKVGRLIYTAGGY--FRQSLSYLEAYNPSNGSWLRLADL--QVPRSGLAGCVVGGLLYA 68
Query: 177 VTGQY-GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG------ 229
V G+ P ++ + T +W + VPR + G ++ +GG
Sbjct: 69 VGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIH 128
Query: 230 -SGENRYTPEVDHWSL 244
S RY PE D W L
Sbjct: 129 HSSVERYEPERDEWHL 144
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 14/158 (8%)
Query: 98 PELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
PE + A + R G + + N LLY G+ + ++S + Y N W R
Sbjct: 138 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEW--RMIT 194
Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
P S G+ IY G Y Q + + + D ET+ W + P+ R A
Sbjct: 195 PMNTIRSGAGVCVLHNCIYAAGG-YDGQDQLNSVERY--DVETETWTFVAPMRHHRSALG 251
Query: 217 TQLWRGRLHVMGG-------SGENRYTPEVDHWSLAVK 247
+ +G+++V+GG Y P+ D WS +
Sbjct: 252 ITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTR 289
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 12/136 (8%)
Query: 117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYV 176
A ++ L+Y GY S+++ YN ++ +W D+ ++ S L G +Y
Sbjct: 14 APKVGRLIYTAGGY--FRQSLSYLEAYNPSNGSWLRLADL--QVPRSGLAGCVVGGLLYA 69
Query: 177 VTGQY-GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG------ 229
V G+ P ++ + T +W + VPR + G ++ +GG
Sbjct: 70 VGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIH 129
Query: 230 -SGENRYTPEVDHWSL 244
S RY PE D W L
Sbjct: 130 HSSVERYEPERDEWHL 145
>pdb|3NB3|A Chain A, The Host Outer Membrane Proteins Ompa And Ompc Are
Packed At Specific Sites In The Shigella Phage Sf6
Virion As Structural Components
pdb|3NB3|B Chain B, The Host Outer Membrane Proteins Ompa And Ompc Are
Packed At Specific Sites In The Shigella Phage Sf6
Virion As Structural Components
pdb|3NB3|C Chain C, The Host Outer Membrane Proteins Ompa And Ompc Are
Packed At Specific Sites In The Shigella Phage Sf6
Virion As Structural Components
Length = 346
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 17 RVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGV 76
+ ++I V + GFA VA ++ +T + L WS YH++ + NNGP +G
Sbjct: 3 KTAIAIAVALAGFATVAQAAPKDNTWYTGAKLG----WSQYHDTGFINNNGPTHENKLGA 58
>pdb|1S9V|A Chain A, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
pdb|1S9V|D Chain D, Crystal Structure Of Hla-Dq2 Complexed With Deamidated
Gliadin Peptide
Length = 193
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 230 SGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP 263
S E Y +V+HW L KPL K W EIP P
Sbjct: 158 SAEESYDCKVEHWGL----DKPLLKHWEPEIPAP 187
>pdb|4HEC|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Tuberculosis
pdb|4HEC|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Tuberculosis
pdb|4HVJ|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Tuberculosis In Complex With Amp
pdb|4HVJ|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Tuberculosis In Complex With Amp
Length = 190
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 165 LGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGR 223
+G+V DGR Y V+ ++ P+ G T V LP LP PA+QLWR R
Sbjct: 43 IGVVAEDGREYYAVSTEFDPERAGSWVRTHV----------LPKLP----PPASQLWRSR 88
Query: 224 LHV 226
+
Sbjct: 89 QQI 91
>pdb|3FMX|X Chain X, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Putida Complexed With Nadh
Length = 364
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 62 ILPNNGPQKGENIGVKTKKDVVPKRILPATFQDL--PAPELKWEKMKAAPVPRLDGAAIQ 119
IL + GP IG+ ++ P+R P+ F+ + AP++ + K A P+ A I
Sbjct: 250 ILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDI-FGKNIANPI-----AMIW 303
Query: 120 IKNLLYVFAGYGSIDYVHSHVDIYN 144
L+ F G G Y +H D+ N
Sbjct: 304 SGALMLEFLGQGDERYQRAHDDMLN 328
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 71/198 (35%), Gaps = 13/198 (6%)
Query: 88 LPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSID--YVHSHVDIYNF 145
+ A F + +W M P PR + N +YV G D V Y+
Sbjct: 65 MSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDR 124
Query: 146 TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL 205
WG +P + + H +++ +YV+ G+ R V D + +W++L
Sbjct: 125 LSFKWGESDPLPY-VVYGHT-VLSHMDLVYVIGGKGSD--RKCLNKMCVYDPKKFEWKEL 180
Query: 206 PPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRG 265
P+ R + GR+ V G + T + +S+ P E P+
Sbjct: 181 APMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE-------AFPQE 233
Query: 266 GPHRACVVVDDRLLVIGG 283
+ V + L IGG
Sbjct: 234 RSSLSLVSLVGTLYAIGG 251
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 15/65 (23%)
Query: 193 FVLDTETK--KWQDLPPLPV-PRYAPATQLWRGRLHVMGGSGEN------------RYTP 237
+ LDT+ K KW L P PR + G L+V GG G+N +Y P
Sbjct: 34 YKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNP 93
Query: 238 EVDHW 242
+ + W
Sbjct: 94 KTNSW 98
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|B Chain B, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|C Chain C, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|D Chain D, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
Length = 364
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 62 ILPNNGPQKGENIGVKTKKDVVPKRILPATFQDL--PAPELKWEKMKAAPVPRLDGAAIQ 119
IL + GP IG+ ++ P+R P+ F+ + AP++ + K A P+ + A+
Sbjct: 250 ILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDI-FGKNIANPIAXIWSGALX 308
Query: 120 IKNLLYVFAGYGSIDYVHSHVDIYN 144
++ F G G Y +H D N
Sbjct: 309 LE-----FLGQGDERYQRAHDDXLN 328
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 119 QIKNLLYV---FAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIY 175
++KNL+++ AG GS D V+ D F N +G D P + + +LG GR++Y
Sbjct: 325 KLKNLIWIHENLAG-GSTDIVYYDNDELIFVRNGYG---DKPGLITYINLGSSKAGRWVY 380
Query: 176 VVTGQYGPQCRGPTAHTFV 194
V P+ G H +
Sbjct: 381 V------PKFAGACIHEYT 393
>pdb|1UVQ|A Chain A, Crystal Structure Of Hla-Dq0602 In Complex With A
Hypocretin Peptide
Length = 197
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 230 SGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP 263
S + Y +V+HW L +PL K W EIP P
Sbjct: 159 SADEIYDCKVEHWGL----DQPLLKHWEPEIPAP 188
>pdb|4D8P|A Chain A, Structural And Functional Studies Of The Trans-Encoded
Hla-Dq2.3 (Dqa103:01DQB102:01) MOLECULE
pdb|4D8P|C Chain C, Structural And Functional Studies Of The Trans-Encoded
Hla-Dq2.3 (Dqa103:01DQB102:01) MOLECULE
Length = 213
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 230 SGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP 263
S + Y +V+HW L +PL K W EIP P
Sbjct: 159 SADEIYDCKVEHWGL----DEPLLKHWEPEIPTP 188
>pdb|3PL6|A Chain A, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 194
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 230 SGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIP 263
S + Y +V+HW L +PL K W EIP P
Sbjct: 159 SADEIYDCKVEHWGL----DQPLLKHWEPEIPAP 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,385,284
Number of Sequences: 62578
Number of extensions: 636907
Number of successful extensions: 1225
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1185
Number of HSP's gapped (non-prelim): 40
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)