Query 016877
Match_columns 381
No_of_seqs 238 out of 2471
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:36:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.2E-45 2.5E-50 359.3 29.6 253 90-380 301-555 (571)
2 PHA02713 hypothetical protein; 100.0 2.1E-43 4.6E-48 345.0 28.6 258 90-380 272-542 (557)
3 PLN02153 epithiospecifier prot 100.0 4.5E-40 9.8E-45 305.6 31.2 292 26-371 25-339 (341)
4 KOG4441 Proteins containing BT 100.0 3.1E-40 6.7E-45 321.4 27.0 239 26-334 325-565 (571)
5 PLN02193 nitrile-specifier pro 100.0 2E-38 4.4E-43 305.1 36.3 317 29-372 116-469 (470)
6 TIGR03547 muta_rot_YjhT mutatr 100.0 7.6E-39 1.7E-43 298.3 30.9 264 92-370 31-345 (346)
7 PLN02153 epithiospecifier prot 100.0 9.4E-39 2E-43 296.8 30.5 268 97-379 4-292 (341)
8 PLN02193 nitrile-specifier pro 100.0 3.5E-38 7.5E-43 303.4 32.7 259 92-380 139-419 (470)
9 PHA02713 hypothetical protein; 100.0 1.7E-38 3.7E-43 310.5 27.3 261 35-325 259-543 (557)
10 PRK14131 N-acetylneuraminic ac 100.0 1.4E-37 2.9E-42 292.1 31.1 266 98-377 60-374 (376)
11 TIGR03548 mutarot_permut cycli 100.0 1.5E-37 3.3E-42 286.6 27.2 284 23-353 3-316 (323)
12 PHA03098 kelch-like protein; P 100.0 2.4E-37 5.3E-42 304.4 29.0 255 91-380 265-520 (534)
13 PHA02790 Kelch-like protein; P 100.0 2.2E-35 4.7E-40 284.8 28.8 210 117-378 267-477 (480)
14 PHA03098 kelch-like protein; P 100.0 1.8E-35 3.9E-40 291.2 28.1 239 27-331 288-527 (534)
15 KOG4693 Uncharacterized conser 100.0 4.4E-36 9.5E-41 250.8 19.6 272 26-351 16-313 (392)
16 TIGR03547 muta_rot_YjhT mutatr 100.0 1.5E-35 3.3E-40 276.2 25.1 255 105-381 1-308 (346)
17 PHA02790 Kelch-like protein; P 100.0 4E-35 8.7E-40 283.0 26.3 189 91-322 288-477 (480)
18 TIGR03548 mutarot_permut cycli 100.0 4.3E-34 9.4E-39 263.6 26.8 241 111-381 3-289 (323)
19 PRK14131 N-acetylneuraminic ac 100.0 9.6E-34 2.1E-38 266.1 26.1 259 101-381 18-330 (376)
20 KOG4693 Uncharacterized conser 100.0 1.3E-33 2.8E-38 236.0 18.9 258 101-379 3-284 (392)
21 KOG0379 Kelch repeat-containin 100.0 7.3E-28 1.6E-32 231.3 25.0 249 22-333 59-323 (482)
22 KOG1230 Protein containing rep 100.0 3.8E-28 8.3E-33 214.6 18.0 261 106-378 61-347 (521)
23 KOG0379 Kelch repeat-containin 100.0 3.8E-27 8.1E-32 226.4 25.8 243 107-380 56-310 (482)
24 KOG4152 Host cell transcriptio 99.9 1.4E-26 3E-31 209.6 19.1 293 66-372 30-364 (830)
25 KOG1230 Protein containing rep 99.9 2.1E-26 4.6E-31 203.6 17.6 254 61-322 59-347 (521)
26 KOG4152 Host cell transcriptio 99.9 2E-25 4.4E-30 202.1 18.4 274 26-314 35-361 (830)
27 COG3055 Uncharacterized protei 99.8 2.5E-19 5.3E-24 157.0 19.0 252 104-381 29-336 (381)
28 COG3055 Uncharacterized protei 99.8 6.5E-19 1.4E-23 154.4 21.2 262 96-372 66-375 (381)
29 KOG2437 Muskelin [Signal trans 99.4 1.3E-13 2.8E-18 125.8 3.3 258 100-380 239-543 (723)
30 PF13964 Kelch_6: Kelch motif 99.3 2.6E-12 5.6E-17 83.6 6.4 49 111-159 1-49 (50)
31 PF13964 Kelch_6: Kelch motif 99.3 3E-12 6.4E-17 83.3 6.5 49 162-212 2-50 (50)
32 KOG2437 Muskelin [Signal trans 99.3 1.3E-13 2.8E-18 125.7 -1.5 170 23-233 260-459 (723)
33 PF01344 Kelch_1: Kelch motif; 99.2 2.6E-11 5.6E-16 77.8 4.2 47 111-157 1-47 (47)
34 PF13415 Kelch_3: Galactose ox 99.1 3.9E-10 8.4E-15 72.8 6.2 48 171-219 1-48 (49)
35 PF01344 Kelch_1: Kelch motif; 99.1 1.9E-10 4.1E-15 73.8 4.3 47 161-209 1-47 (47)
36 PF07646 Kelch_2: Kelch motif; 99.0 6.6E-10 1.4E-14 71.8 6.2 47 111-157 1-49 (49)
37 PF13418 Kelch_4: Galactose ox 99.0 2.7E-10 5.8E-15 73.7 4.1 47 111-157 1-48 (49)
38 PF07646 Kelch_2: Kelch motif; 99.0 1.2E-09 2.7E-14 70.5 6.7 49 161-209 1-49 (49)
39 PF13415 Kelch_3: Galactose ox 98.9 4.9E-09 1.1E-13 67.6 6.1 47 121-169 1-48 (49)
40 smart00612 Kelch Kelch domain. 98.9 3.5E-09 7.5E-14 67.7 5.3 47 173-222 1-47 (47)
41 PF13418 Kelch_4: Galactose ox 98.9 2.4E-09 5.3E-14 69.2 4.1 47 162-210 2-49 (49)
42 smart00612 Kelch Kelch domain. 98.7 4.9E-08 1.1E-12 62.3 5.0 47 123-172 1-47 (47)
43 PF13854 Kelch_5: Kelch motif 98.7 6.9E-08 1.5E-12 59.9 5.3 41 108-148 1-42 (42)
44 PLN02772 guanylate kinase 98.5 7.7E-07 1.7E-11 82.0 11.0 87 109-200 22-110 (398)
45 PF07250 Glyoxal_oxid_N: Glyox 98.5 3.8E-06 8.1E-11 73.0 14.0 152 140-327 48-210 (243)
46 PLN02772 guanylate kinase 98.5 9.1E-07 2E-11 81.5 10.5 79 161-245 24-106 (398)
47 PF13854 Kelch_5: Kelch motif 98.4 7.1E-07 1.5E-11 55.2 5.5 39 160-199 3-41 (42)
48 TIGR01640 F_box_assoc_1 F-box 98.4 0.00013 2.9E-09 63.8 21.3 181 90-283 14-215 (230)
49 TIGR01640 F_box_assoc_1 F-box 98.3 0.0002 4.4E-09 62.7 20.8 198 138-373 14-230 (230)
50 PF07250 Glyoxal_oxid_N: Glyox 98.2 3.9E-05 8.5E-10 66.7 14.2 151 190-381 46-208 (243)
51 PF03089 RAG2: Recombination a 98.0 0.00097 2.1E-08 58.0 18.0 160 124-287 41-231 (337)
52 PRK11138 outer membrane biogen 98.0 0.012 2.6E-07 56.0 26.3 247 28-347 64-342 (394)
53 PF07893 DUF1668: Protein of u 97.7 0.0052 1.1E-07 57.1 18.2 124 168-324 73-216 (342)
54 TIGR03300 assembly_YfgL outer 97.6 0.067 1.5E-06 50.5 26.5 211 27-282 59-286 (377)
55 PF03089 RAG2: Recombination a 97.4 0.0049 1.1E-07 53.7 13.2 112 174-287 41-176 (337)
56 PRK11138 outer membrane biogen 97.4 0.13 2.8E-06 48.9 25.4 211 28-282 115-342 (394)
57 TIGR03300 assembly_YfgL outer 96.9 0.41 8.8E-06 45.2 25.3 169 29-228 101-286 (377)
58 PF07893 DUF1668: Protein of u 96.6 0.073 1.6E-06 49.5 14.4 112 91-210 87-221 (342)
59 PF13360 PQQ_2: PQQ-like domai 96.5 0.47 1E-05 41.2 24.2 209 90-376 3-237 (238)
60 PF12768 Rax2: Cortical protei 95.8 0.17 3.7E-06 45.4 11.8 101 125-230 2-110 (281)
61 PF12768 Rax2: Cortical protei 95.6 0.43 9.4E-06 42.8 13.4 110 188-324 14-130 (281)
62 PF13360 PQQ_2: PQQ-like domai 95.6 1.4 3.1E-05 38.2 21.5 157 50-229 4-181 (238)
63 KOG2055 WD40 repeat protein [G 95.4 0.65 1.4E-05 43.5 13.9 135 123-285 226-366 (514)
64 TIGR03866 PQQ_ABC_repeats PQQ- 95.3 2 4.4E-05 38.3 21.7 140 34-201 1-148 (300)
65 PF08450 SGL: SMP-30/Gluconola 94.8 1.5 3.2E-05 38.5 14.5 86 121-228 11-103 (246)
66 PRK13684 Ycf48-like protein; P 93.6 6.1 0.00013 36.7 22.0 156 98-283 74-233 (334)
67 PRK13684 Ycf48-like protein; P 93.4 6.6 0.00014 36.4 21.2 205 92-350 111-323 (334)
68 PF02191 OLF: Olfactomedin-lik 93.1 3 6.6E-05 36.8 12.9 183 121-347 30-237 (250)
69 KOG0310 Conserved WD40 repeat- 92.7 5.9 0.00013 37.5 14.5 136 118-287 162-302 (487)
70 cd00200 WD40 WD40 domain, foun 92.5 6.4 0.00014 34.0 22.2 61 122-200 105-167 (289)
71 PF08450 SGL: SMP-30/Gluconola 92.2 6.3 0.00014 34.5 14.0 123 89-227 21-151 (246)
72 KOG2055 WD40 repeat protein [G 91.6 12 0.00026 35.4 15.0 126 87-229 277-406 (514)
73 COG4257 Vgb Streptogramin lyas 91.5 7.4 0.00016 34.5 12.8 152 33-206 158-313 (353)
74 PF10282 Lactonase: Lactonase, 90.5 15 0.00032 34.2 19.9 236 91-379 63-332 (345)
75 TIGR03866 PQQ_ABC_repeats PQQ- 89.4 15 0.00032 32.6 17.1 66 123-204 2-67 (300)
76 PF08268 FBA_3: F-box associat 89.0 4.4 9.6E-05 31.6 9.0 82 169-259 3-87 (129)
77 PF05096 Glu_cyclase_2: Glutam 88.6 6.7 0.00014 34.7 10.5 101 163-285 46-149 (264)
78 PF05096 Glu_cyclase_2: Glutam 88.4 6.9 0.00015 34.6 10.4 96 220-350 54-149 (264)
79 KOG0310 Conserved WD40 repeat- 87.6 27 0.00058 33.4 15.4 102 120-244 121-224 (487)
80 PF12217 End_beta_propel: Cata 87.4 20 0.00042 31.6 15.4 255 29-286 21-335 (367)
81 KOG0649 WD40 repeat protein [G 87.2 19 0.00042 31.3 13.7 150 101-284 100-264 (325)
82 PF10282 Lactonase: Lactonase, 86.7 27 0.00058 32.5 16.4 94 126-227 3-104 (345)
83 PF06433 Me-amine-dh_H: Methyl 86.6 14 0.0003 34.0 11.6 66 88-158 65-138 (342)
84 cd00094 HX Hemopexin-like repe 86.2 19 0.00041 30.3 15.0 22 167-198 12-33 (194)
85 smart00284 OLF Olfactomedin-li 86.0 24 0.00052 31.2 16.4 184 121-346 34-241 (255)
86 PF09910 DUF2139: Uncharacteri 85.4 28 0.0006 31.4 17.0 160 152-346 27-219 (339)
87 PF03178 CPSF_A: CPSF A subuni 84.2 29 0.00062 31.8 13.0 122 90-228 62-190 (321)
88 PF14870 PSII_BNR: Photosynthe 83.9 34 0.00074 31.2 18.2 206 92-350 83-296 (302)
89 PF03178 CPSF_A: CPSF A subuni 83.8 18 0.00039 33.1 11.5 78 138-227 62-145 (321)
90 cd00094 HX Hemopexin-like repe 82.8 27 0.0006 29.4 13.5 94 116-230 11-119 (194)
91 PF08268 FBA_3: F-box associat 82.7 16 0.00036 28.3 9.3 84 119-206 3-88 (129)
92 PRK11028 6-phosphogluconolacto 82.6 39 0.00084 31.0 25.9 95 90-200 57-158 (330)
93 PRK00178 tolB translocation pr 82.4 48 0.001 31.8 22.9 104 90-206 223-327 (430)
94 TIGR02800 propeller_TolB tol-p 82.1 47 0.001 31.5 20.7 62 138-207 214-275 (417)
95 KOG0296 Angio-associated migra 81.9 43 0.00093 30.9 13.7 60 165-232 68-128 (399)
96 PRK05137 tolB translocation pr 81.5 52 0.0011 31.7 22.9 63 138-208 226-288 (435)
97 PLN00033 photosystem II stabil 81.5 50 0.0011 31.4 21.6 98 92-205 112-214 (398)
98 cd00216 PQQ_DH Dehydrogenases 81.2 58 0.0013 32.0 24.4 27 28-60 104-131 (488)
99 PF02191 OLF: Olfactomedin-lik 81.0 39 0.00085 29.9 15.8 178 32-227 29-236 (250)
100 PLN00181 protein SPA1-RELATED; 80.7 79 0.0017 33.2 17.5 62 122-200 545-608 (793)
101 TIGR02800 propeller_TolB tol-p 79.8 56 0.0012 31.0 20.3 59 309-379 303-362 (417)
102 cd00200 WD40 WD40 domain, foun 79.3 40 0.00086 28.9 19.9 64 121-201 62-126 (289)
103 TIGR02658 TTQ_MADH_Hv methylam 79.3 55 0.0012 30.6 23.1 117 33-157 12-147 (352)
104 PF06433 Me-amine-dh_H: Methyl 79.0 38 0.00083 31.3 11.3 179 47-245 65-275 (342)
105 PTZ00421 coronin; Provisional 78.5 71 0.0015 31.4 18.3 101 121-243 87-196 (493)
106 PRK04792 tolB translocation pr 78.5 67 0.0015 31.1 24.1 62 138-207 242-303 (448)
107 COG4946 Uncharacterized protei 78.2 67 0.0014 30.9 14.5 72 118-206 232-303 (668)
108 PRK05137 tolB translocation pr 77.9 68 0.0015 30.9 20.8 66 137-210 181-246 (435)
109 PRK04922 tolB translocation pr 77.8 69 0.0015 30.8 22.9 62 138-207 228-289 (433)
110 PRK04922 tolB translocation pr 77.7 69 0.0015 30.8 22.6 104 90-206 228-332 (433)
111 TIGR03075 PQQ_enz_alc_DH PQQ-d 77.4 38 0.00083 33.6 11.9 59 309-374 131-192 (527)
112 PF02897 Peptidase_S9_N: Proly 76.9 70 0.0015 30.4 14.5 198 137-379 201-412 (414)
113 PRK04792 tolB translocation pr 75.8 80 0.0017 30.6 23.6 104 90-206 242-346 (448)
114 PRK11028 6-phosphogluconolacto 75.3 66 0.0014 29.4 20.0 90 123-228 3-98 (330)
115 PRK00178 tolB translocation pr 75.3 79 0.0017 30.3 23.2 62 138-207 223-284 (430)
116 KOG1332 Vesicle coat complex C 74.7 58 0.0013 28.5 12.6 16 365-380 280-296 (299)
117 TIGR03075 PQQ_enz_alc_DH PQQ-d 74.7 73 0.0016 31.7 13.1 95 117-227 65-171 (527)
118 cd00216 PQQ_DH Dehydrogenases 73.6 96 0.0021 30.5 27.0 115 28-152 56-191 (488)
119 KOG0649 WD40 repeat protein [G 73.2 64 0.0014 28.3 12.4 116 148-285 99-227 (325)
120 PLN03215 ascorbic acid mannose 72.7 86 0.0019 29.5 13.5 102 147-262 189-304 (373)
121 PLN03215 ascorbic acid mannose 72.5 72 0.0016 30.0 11.6 104 253-381 189-304 (373)
122 KOG0646 WD40 repeat protein [G 72.4 92 0.002 29.8 17.3 123 48-182 17-145 (476)
123 COG4880 Secreted protein conta 70.7 1E+02 0.0022 29.5 12.9 77 115-200 380-459 (603)
124 PF13859 BNR_3: BNR repeat-lik 70.7 87 0.0019 28.7 14.5 185 115-325 2-216 (310)
125 COG4257 Vgb Streptogramin lyas 68.5 89 0.0019 28.0 14.3 116 116-260 194-313 (353)
126 KOG0281 Beta-TrCP (transducin 67.0 39 0.00085 31.0 8.2 178 32-244 245-427 (499)
127 smart00284 OLF Olfactomedin-li 64.2 1E+02 0.0023 27.3 17.5 194 3-227 17-241 (255)
128 PF13859 BNR_3: BNR repeat-lik 62.8 1.3E+02 0.0027 27.7 13.7 184 165-377 2-211 (310)
129 PLN00033 photosystem II stabil 62.6 1.5E+02 0.0031 28.4 20.4 120 93-229 159-299 (398)
130 KOG0278 Serine/threonine kinas 62.4 1.1E+02 0.0024 27.0 9.9 123 189-352 164-290 (334)
131 KOG0316 Conserved WD40 repeat- 60.4 70 0.0015 27.9 8.1 109 30-150 67-177 (307)
132 PRK10115 protease 2; Provision 58.4 2.3E+02 0.005 29.3 21.2 131 138-285 199-335 (686)
133 PLN00181 protein SPA1-RELATED; 57.8 2.5E+02 0.0054 29.5 23.7 99 121-244 587-689 (793)
134 PRK02889 tolB translocation pr 57.0 1.9E+02 0.004 27.8 22.8 62 138-207 220-281 (427)
135 COG3823 Glutamine cyclotransfe 56.5 1.3E+02 0.0028 25.9 10.2 111 154-284 38-149 (262)
136 KOG2445 Nuclear pore complex c 56.3 1.6E+02 0.0034 26.8 12.1 111 94-208 94-219 (361)
137 KOG0289 mRNA splicing factor [ 56.0 1.9E+02 0.0041 27.6 10.8 33 337-381 438-472 (506)
138 PRK02889 tolB translocation pr 55.6 2E+02 0.0042 27.6 18.9 63 138-208 176-238 (427)
139 KOG2048 WD40 repeat protein [G 54.7 2.4E+02 0.0053 28.5 21.9 98 28-132 209-311 (691)
140 KOG0289 mRNA splicing factor [ 54.0 2.1E+02 0.0045 27.4 12.2 120 165-329 351-476 (506)
141 KOG2321 WD40 repeat protein [G 53.6 2.4E+02 0.0052 28.1 11.4 75 110-201 132-208 (703)
142 PF12217 End_beta_propel: Cata 50.8 1.8E+02 0.0039 25.8 10.9 65 115-180 194-258 (367)
143 KOG0279 G protein beta subunit 49.4 2E+02 0.0043 25.8 17.2 184 31-244 72-261 (315)
144 PRK03629 tolB translocation pr 48.7 2.5E+02 0.0055 26.9 24.0 63 138-208 223-285 (429)
145 KOG0278 Serine/threonine kinas 48.7 1.9E+02 0.0042 25.5 10.5 120 91-232 166-289 (334)
146 PF15525 DUF4652: Domain of un 48.4 1.6E+02 0.0036 24.6 9.3 73 136-212 86-162 (200)
147 TIGR03074 PQQ_membr_DH membran 48.1 3.5E+02 0.0076 28.4 15.7 36 165-209 188-225 (764)
148 KOG2321 WD40 repeat protein [G 47.8 3E+02 0.0065 27.5 13.7 38 248-287 159-198 (703)
149 PF13570 PQQ_3: PQQ-like domai 47.1 43 0.00093 19.7 3.7 26 165-199 15-40 (40)
150 PF14781 BBS2_N: Ciliary BBSom 46.1 93 0.002 24.5 6.2 27 340-379 107-135 (136)
151 PRK04043 tolB translocation pr 45.7 2.8E+02 0.0061 26.6 19.4 103 91-206 214-317 (419)
152 KOG0291 WD40-repeat-containing 43.3 4E+02 0.0086 27.6 16.1 49 191-244 331-379 (893)
153 KOG3545 Olfactomedin and relat 42.2 2.4E+02 0.0052 24.8 13.4 187 7-227 20-235 (249)
154 KOG0647 mRNA export protein (c 41.6 2.4E+02 0.0052 25.7 8.7 132 33-182 83-220 (347)
155 COG1520 FOG: WD40-like repeat 40.9 3.1E+02 0.0066 25.6 17.4 151 29-204 64-225 (370)
156 PF02897 Peptidase_S9_N: Proly 40.2 3.3E+02 0.0071 25.8 15.9 184 33-228 134-343 (414)
157 KOG2111 Uncharacterized conser 39.0 3.1E+02 0.0067 25.1 12.4 56 171-228 58-119 (346)
158 PRK04043 tolB translocation pr 37.6 3.8E+02 0.0082 25.7 19.5 188 139-373 214-402 (419)
159 KOG4378 Nuclear protein COP1 [ 37.4 4.1E+02 0.0089 26.1 11.0 18 270-287 215-232 (673)
160 KOG0315 G-protein beta subunit 36.7 3E+02 0.0066 24.4 22.8 98 90-204 61-160 (311)
161 PF14870 PSII_BNR: Photosynthe 36.3 3.4E+02 0.0073 24.8 20.9 161 92-282 39-204 (302)
162 KOG1036 Mitotic spindle checkp 36.0 3.4E+02 0.0073 24.7 13.2 88 138-244 35-123 (323)
163 PF05262 Borrelia_P83: Borreli 34.5 3E+02 0.0064 27.1 9.0 87 133-227 370-456 (489)
164 KOG3545 Olfactomedin and relat 34.4 3.3E+02 0.007 24.0 13.9 182 121-347 30-236 (249)
165 TIGR02658 TTQ_MADH_Hv methylam 34.0 4E+02 0.0087 25.0 18.9 70 33-103 57-141 (352)
166 COG4447 Uncharacterized protei 33.5 2.7E+02 0.0059 25.1 7.8 129 149-324 33-165 (339)
167 PRK03629 tolB translocation pr 32.6 4.5E+02 0.0099 25.2 23.8 170 91-285 224-394 (429)
168 KOG0643 Translation initiation 32.4 3.7E+02 0.0081 24.1 10.4 108 109-232 144-254 (327)
169 KOG2445 Nuclear pore complex c 32.3 4E+02 0.0086 24.4 8.6 18 364-381 202-219 (361)
170 KOG0639 Transducin-like enhanc 30.3 5.4E+02 0.012 25.3 12.1 104 31-148 474-583 (705)
171 KOG1332 Vesicle coat complex C 29.4 4E+02 0.0087 23.6 8.5 75 108-207 219-296 (299)
172 PTZ00421 coronin; Provisional 29.2 5.7E+02 0.012 25.2 15.3 22 34-60 138-159 (493)
173 COG1520 FOG: WD40-like repeat 28.7 4.8E+02 0.01 24.3 19.5 92 117-227 64-159 (370)
174 KOG0291 WD40-repeat-containing 28.6 6.9E+02 0.015 26.0 22.5 130 91-244 373-507 (893)
175 PF07734 FBA_1: F-box associat 28.5 3.2E+02 0.0068 22.0 8.5 84 168-259 2-90 (164)
176 PRK02888 nitrous-oxide reducta 28.4 6.5E+02 0.014 25.7 15.4 50 310-372 298-352 (635)
177 KOG0299 U3 snoRNP-associated p 28.4 5.5E+02 0.012 24.8 14.6 30 26-60 206-235 (479)
178 KOG0316 Conserved WD40 repeat- 28.4 4.1E+02 0.0089 23.4 12.4 132 50-201 40-176 (307)
179 PF08662 eIF2A: Eukaryotic tra 28.1 3.6E+02 0.0078 22.5 9.0 91 121-228 71-161 (194)
180 PF09910 DUF2139: Uncharacteri 27.6 4.8E+02 0.01 23.8 15.4 69 121-202 117-185 (339)
181 KOG0294 WD40 repeat-containing 26.1 2.2E+02 0.0047 26.1 6.0 62 279-374 4-74 (362)
182 KOG2111 Uncharacterized conser 25.3 2.3E+02 0.005 25.9 6.0 58 121-178 58-119 (346)
183 COG2706 3-carboxymuconate cycl 24.3 5.8E+02 0.013 23.7 22.8 63 137-206 166-231 (346)
184 KOG0282 mRNA splicing factor [ 24.0 6.2E+02 0.013 24.6 8.8 22 122-149 312-333 (503)
185 PTZ00420 coronin; Provisional 23.5 7.7E+02 0.017 24.9 15.5 22 34-60 138-159 (568)
186 PF02239 Cytochrom_D1: Cytochr 23.3 3.8E+02 0.0082 25.2 7.7 157 26-203 38-207 (369)
187 KOG0772 Uncharacterized conser 22.3 7.7E+02 0.017 24.4 13.7 119 209-371 314-445 (641)
188 PF13088 BNR_2: BNR repeat-lik 22.2 1.6E+02 0.0035 25.9 4.8 76 100-176 194-275 (275)
189 KOG0272 U4/U6 small nuclear ri 22.1 7E+02 0.015 23.9 11.5 142 165-352 307-453 (459)
190 PRK09891 cold shock gene; Prov 21.4 1.2E+02 0.0025 19.8 2.6 39 3-41 2-40 (76)
191 KOG2315 Predicted translation 20.1 3.5E+02 0.0076 26.7 6.5 91 51-147 253-345 (566)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.2e-45 Score=359.32 Aligned_cols=253 Identities=21% Similarity=0.351 Sum_probs=225.0
Q ss_pred cceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877 90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169 (381)
Q Consensus 90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 169 (381)
..+..||+.+++|..+++||.+|..+++++++++||++||.+.....++++|+||+.+++|..+++|+. +|..+++++
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~--~R~~~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT--KRSDFGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC--ccccceeEE
Confidence 367788889999999999999999999999999999999999544456889999999999999999999 589999999
Q ss_pred eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCC-CCCCccceEeeeec
Q 016877 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENR-YTPEVDHWSLAVKD 248 (381)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~~~~ 248 (381)
++++||++||.++... ++++++|||.+++|+.+++|+.+|++|++++++++||++||.++.. ...+ +++
T Consensus 379 l~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~s-------ve~ 448 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKS---LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNS-------VEC 448 (571)
T ss_pred ECCEEEEEeccccccc---cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccce-------EEE
Confidence 9999999999997654 7899999999999999999999999999999999999999988754 3444 455
Q ss_pred CCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCC
Q 016877 249 GKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPK 327 (381)
Q Consensus 249 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~ 327 (381)
|||.+++|+.++||+..|.++++++++++||++||+++.. ....+..|| .+++|+.+++|+.
T Consensus 449 YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~-----------------~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS-----------------ALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EcCCCCceeecCCcccccccceEEEECCEEEEECCccCCC-----------------ccceEEEEcCCCCceeEcccCcc
Confidence 6799999999999999999999999999999999998632 134489999 9999999999998
Q ss_pred CCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeec
Q 016877 328 PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAM 380 (381)
Q Consensus 328 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~ 380 (381)
+|... ++++.+++||++||+++.. +++.++.|||++|+|+....
T Consensus 512 ~rs~~--g~~~~~~~ly~vGG~~~~~-------~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 512 PRSAV--GVVVLGGKLYAVGGFDGNN-------NLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ccccc--cEEEECCEEEEEecccCcc-------ccceeEEcCCCCCceeeCCC
Confidence 88764 4589999999999988776 67899999999999998764
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=344.99 Aligned_cols=258 Identities=16% Similarity=0.185 Sum_probs=217.3
Q ss_pred cceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877 90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169 (381)
Q Consensus 90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 169 (381)
..+++||+.+++|..+++||.+|..+++++++++|||+||.+......+++++||+.+++|..+++||. +|..+++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~R~~~~~~~ 349 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--NRCRFSLAV 349 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--hhhceeEEE
Confidence 367899999999999999999999999999999999999986444446789999999999999999998 478899999
Q ss_pred eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCC-CCCCc---------
Q 016877 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENR-YTPEV--------- 239 (381)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~--------- 239 (381)
++++||++||.++.. ..+++++|||.+++|+.+++||.+|..+++++++++||++||.+... +.+..
T Consensus 350 ~~g~IYviGG~~~~~---~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 IDDTIYAIGGQNGTN---VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred ECCEEEEECCcCCCC---CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence 999999999987543 36889999999999999999999999999999999999999976421 00000
Q ss_pred -cceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CC-
Q 016877 240 -DHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE- 316 (381)
Q Consensus 240 -~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~- 316 (381)
......++.|||.+++|+.+++|+.+|..+++++++++||++||.++... ..+.+++|| ++
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~----------------~~~~ve~Ydp~~~ 490 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKN----------------VKTCIFRYNTNTY 490 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCc----------------cceeEEEecCCCC
Confidence 01123467888999999999999999988899999999999999863211 123478999 77
Q ss_pred CCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeec
Q 016877 317 MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAM 380 (381)
Q Consensus 317 ~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~ 380 (381)
++|+.+++||.+|.. +++++++++||++||+++.. .+++||+++++|+.++.
T Consensus 491 ~~W~~~~~m~~~r~~--~~~~~~~~~iyv~Gg~~~~~----------~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 491 NGWELITTTESRLSA--LHTILHDNTIMMLHCYESYM----------LQDTFNVYTYEWNHICH 542 (557)
T ss_pred CCeeEccccCccccc--ceeEEECCEEEEEeeeccee----------ehhhcCcccccccchhh
Confidence 799999999988875 45689999999999988632 58999999999998753
No 3
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=4.5e-40 Score=305.59 Aligned_cols=292 Identities=19% Similarity=0.271 Sum_probs=213.8
Q ss_pred HhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEc
Q 016877 26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKM 105 (381)
Q Consensus 26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l 105 (381)
.|+++++++.|||+||..... ....+.+++||+.+++|+++
T Consensus 25 ~h~~~~~~~~iyv~GG~~~~~---------------------------------------~~~~~~~~~yd~~~~~W~~~ 65 (341)
T PLN02153 25 SHGIAVVGDKLYSFGGELKPN---------------------------------------EHIDKDLYVFDFNTHTWSIA 65 (341)
T ss_pred cceEEEECCEEEEECCccCCC---------------------------------------CceeCcEEEEECCCCEEEEc
Confidence 689999999999999953211 01223678888899999998
Q ss_pred cCCC-CCCC---CceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC---CCccceEEEEEeCCEEEEEc
Q 016877 106 KAAP-VPRL---DGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR---EMAHSHLGMVTDGRYIYVVT 178 (381)
Q Consensus 106 ~~~p-~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~~~r~~~~~~~~~~~iyv~G 178 (381)
++++ .||. .|+++.++++||||||.+.... ++++++||+++++|+.+++|+. |.+|..|++++.+++|||+|
T Consensus 66 ~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~G 144 (341)
T PLN02153 66 PANGDVPRISCLGVRMVAVGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFG 144 (341)
T ss_pred CccCCCCCCccCceEEEEECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEEC
Confidence 8754 4443 6888999999999999875543 5789999999999999987721 44688999999999999999
Q ss_pred CCCCCCC---CCCcceEEEEECCCCcEEeCCCCC---CCCcccEEEEECCEEEEEccCCCCCCC-CCccceEeeeecCCc
Q 016877 179 GQYGPQC---RGPTAHTFVLDTETKKWQDLPPLP---VPRYAPATQLWRGRLHVMGGSGENRYT-PEVDHWSLAVKDGKP 251 (381)
Q Consensus 179 G~~~~~~---~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~-~~~~~~~~~~~~~~~ 251 (381)
|.+.... ...++++++||+++++|+.++++. .+|..|++++++++|||+||....... .........++.||+
T Consensus 145 G~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~ 224 (341)
T PLN02153 145 GVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP 224 (341)
T ss_pred CccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc
Confidence 9864321 113578999999999999998654 789999999999999999997532100 000011123556779
Q ss_pred cCCceEEecC---CCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCC---
Q 016877 252 LEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPS--- 324 (381)
Q Consensus 252 ~~~~W~~~~~---~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~--- 324 (381)
.+++|+.+.+ +|..|..+++++++++||||||...... ........+.+++|.|| ++++|+.+..
T Consensus 225 ~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~ 296 (341)
T PLN02153 225 ASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDL--------KGHLGPGTLSNEGYALDTETLVWEKLGECGE 296 (341)
T ss_pred CCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcc--------ccccccccccccEEEEEcCccEEEeccCCCC
Confidence 9999999864 5777878899999999999999743210 00011223567899999 9999998863
Q ss_pred CCCCCCC--cceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcC
Q 016877 325 MPKPDSH--IEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN 371 (381)
Q Consensus 325 ~~~~~~~--~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~ 371 (381)
.+.||.+ ++++++..+++|||+||.++... .++|+|+|+..
T Consensus 297 ~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~------~~~~~~~~~~~ 339 (341)
T PLN02153 297 PAMPRGWTAYTTATVYGKNGLLMHGGKLPTNE------RTDDLYFYAVN 339 (341)
T ss_pred CCCCCccccccccccCCcceEEEEcCcCCCCc------cccceEEEecc
Confidence 2344444 33333344568999999976532 56899999864
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.1e-40 Score=321.38 Aligned_cols=239 Identities=18% Similarity=0.312 Sum_probs=207.8
Q ss_pred HhhheeEcCEEEEecCCC-CCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEE
Q 016877 26 ILGFALVADFFWASSSKF-TSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEK 104 (381)
Q Consensus 26 ~~~~~~~~~~ly~~GG~~-~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 104 (381)
.+++++++|+||++||.+ +...++ .+++||+.+++|++
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~-----------------------------------------~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLS-----------------------------------------SVERYDPRTNQWTP 363 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccc-----------------------------------------eEEEecCCCCceec
Confidence 799999999999999988 555544 45555667778999
Q ss_pred ccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCC
Q 016877 105 MKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQ 184 (381)
Q Consensus 105 l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 184 (381)
+++|+.+|..++++++++.||++||.++... ++++|+|||.+++|+.+++|+. +|..+++++.+++||++||.++..
T Consensus 364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va~m~~--~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVAPMLT--RRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred cCCccCccccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccCCCCc--ceeeeEEEEECCEEEEEcCcCCCc
Confidence 9999999999999999999999999997665 4679999999999999999998 589999999999999999998876
Q ss_pred CCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCC
Q 016877 185 CRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR 264 (381)
Q Consensus 185 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~ 264 (381)
. .++.+++|||.+++|+.+++|+.+|.++.+++++++||++||+++.....+ ++.|||.+++|+.+.+|+.
T Consensus 441 ~--~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~-------VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 441 N--CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSS-------VERYDPETNQWTMVAPMTS 511 (571)
T ss_pred c--ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccce-------EEEEcCCCCceeEcccCcc
Confidence 2 489999999999999999999999999999999999999999987322222 5667799999999999999
Q ss_pred CCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcce
Q 016877 265 GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEF 334 (381)
Q Consensus 265 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~ 334 (381)
.+....++.++++||++||+++.. +++.+..|| ++++|+..+++...+...++
T Consensus 512 ~rs~~g~~~~~~~ly~vGG~~~~~-----------------~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~ 565 (571)
T KOG4441|consen 512 PRSAVGVVVLGGKLYAVGGFDGNN-----------------NLNTVECYDPETDTWTEVTEPESGRGGAGV 565 (571)
T ss_pred ccccccEEEECCEEEEEecccCcc-----------------ccceeEEcCCCCCceeeCCCccccccCcce
Confidence 999889999999999999987654 466789999 99999999985555544433
No 5
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2e-38 Score=305.07 Aligned_cols=317 Identities=16% Similarity=0.236 Sum_probs=238.9
Q ss_pred heeEcCEEEEecCCCCCcccceeeee--eCCC----ce-eeecC----CCCCCCceeEEeee-cccccccc-----cCcc
Q 016877 29 FALVADFFWASSSKFTSSYLNIASNW--SPYH----NS-IILPN----NGPQKGENIGVKTK-KDVVPKRI-----LPAT 91 (381)
Q Consensus 29 ~~~~~~~ly~~GG~~~~~~~~~~~~~--d~~~----~~-~~~p~----~~~~~~~~~~~~~~-~~~~~~~~-----~~~~ 91 (381)
+.+.+++|+.|+|..+. .++.+..| +|.+ ++ ..+.+ +.||..|+++..++ ++..++.. ..+.
T Consensus 116 f~~~~~~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~ 194 (470)
T PLN02193 116 FVLQGGKIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKH 194 (470)
T ss_pred EEEcCCeEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCc
Confidence 44569999999997654 36666666 7655 44 44433 56899999887766 77777642 3346
Q ss_pred eEeecCCCCCeEEccC---CCC-CCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC-CCccceEE
Q 016877 92 FQDLPAPELKWEKMKA---APV-PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EMAHSHLG 166 (381)
Q Consensus 92 ~~~~~~~~~~W~~l~~---~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~r~~~~ 166 (381)
+++||+.+++|+.+++ +|. +|..++++.++++|||+||.+... .++++++||+.+++|+++++++. |.+|..|+
T Consensus 195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 9999999999998765 343 356788899999999999987644 45789999999999999988732 34688899
Q ss_pred EEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC---CCCCCcccEEEEECCEEEEEccCCCCCCCCCccceE
Q 016877 167 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWS 243 (381)
Q Consensus 167 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~ 243 (381)
+++.+++|||+||.+... .++++++||+.+++|+.+++ +|.+|..|++++++++||++||.++.. .
T Consensus 274 ~~~~~~~iYv~GG~~~~~---~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-~------- 342 (470)
T PLN02193 274 MAADEENVYVFGGVSATA---RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-V------- 342 (470)
T ss_pred EEEECCEEEEECCCCCCC---CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-c-------
Confidence 999999999999987643 36889999999999999874 678899999999999999999976421 1
Q ss_pred eeeecCCccCCceEEecCC---CCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCe
Q 016877 244 LAVKDGKPLEKEWRTEIPI---PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW 319 (381)
Q Consensus 244 ~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W 319 (381)
..++.||+.+++|+.++++ |.+|..++++.++++|||+||...... ........+.++++.|| .+++|
T Consensus 343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDP--------LAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred CceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCcc--------ccccCccceeccEEEEEcCcCEE
Confidence 2244556899999998654 777777889999999999999864210 00011223577899999 99999
Q ss_pred EEcCCC------CCCCCCcceEEEEEC--CEEEEEcccccccCCceeeeeecceEEEEcCC
Q 016877 320 KVLPSM------PKPDSHIEFAWVLVN--NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT 372 (381)
Q Consensus 320 ~~i~~~------~~~~~~~~~~~~~~~--~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 372 (381)
+.++.+ |.+|..++++++.++ +.|+++||.+.... +++|+|+|++++
T Consensus 415 ~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~------~~~D~~~~~~~~ 469 (470)
T PLN02193 415 ERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTND------RFDDLFFYGIDS 469 (470)
T ss_pred EEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccc------cccceEEEecCC
Confidence 998754 455555443333343 45999999976543 688999998865
No 6
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=7.6e-39 Score=298.35 Aligned_cols=264 Identities=19% Similarity=0.237 Sum_probs=188.1
Q ss_pred eEeec--CCCCCeEEccCCC-CCCCCceEEEECCEEEEEecCCCCC-----CcccceEEEeCCCCeEecCCCCCCCCccc
Q 016877 92 FQDLP--APELKWEKMKAAP-VPRLDGAAIQIKNLLYVFAGYGSID-----YVHSHVDIYNFTDNTWGGRFDMPREMAHS 163 (381)
Q Consensus 92 ~~~~~--~~~~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~~~~~~r~ 163 (381)
+++|| +.+++|.++++|| .+|..+++++++++|||+||..... ..++++|+||+.+++|+.++. +.|+.|.
T Consensus 31 ~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~ 109 (346)
T TIGR03547 31 WYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLL 109 (346)
T ss_pred eEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCccc
Confidence 34444 3678999999999 5899999999999999999985422 245789999999999999974 3344566
Q ss_pred eEEEE-EeCCEEEEEcCCCCCCC-------------------------------CCCcceEEEEECCCCcEEeCCCCCC-
Q 016877 164 HLGMV-TDGRYIYVVTGQYGPQC-------------------------------RGPTAHTFVLDTETKKWQDLPPLPV- 210 (381)
Q Consensus 164 ~~~~~-~~~~~iyv~GG~~~~~~-------------------------------~~~~~~~~~yd~~~~~W~~~~~~p~- 210 (381)
.++++ +.+++||++||.+.... ....+++++|||++++|+.+++||.
T Consensus 110 ~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~ 189 (346)
T TIGR03547 110 GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFL 189 (346)
T ss_pred ceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCC
Confidence 66665 79999999999763210 0013789999999999999999996
Q ss_pred CCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCC-------cceeEEEeCCEEEEEcc
Q 016877 211 PRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG-------PHRACVVVDDRLLVIGG 283 (381)
Q Consensus 211 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~-------~~~~~~~~~~~l~v~GG 283 (381)
+|..+++++++++|||+||...... ...+. .++++|+.+++|+.+++||..+ ..+.+++++++||++||
T Consensus 190 ~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~---~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG 265 (346)
T TIGR03547 190 GTAGSAIVHKGNKLLLINGEIKPGL-RTAEV---KQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGG 265 (346)
T ss_pred cCCCceEEEECCEEEEEeeeeCCCc-cchhe---EEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeec
Confidence 7899999999999999999754321 11222 2345568889999999887644 23446789999999999
Q ss_pred CCCCCCCCC--CCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeee
Q 016877 284 QEGDFMAKP--GSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMV 360 (381)
Q Consensus 284 ~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~ 360 (381)
.+....... ....+....... ...+.+|| ++++|+.+++||.+|.. +++++++++|||+||.+..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~yd~~~~~W~~~~~lp~~~~~--~~~~~~~~~iyv~GG~~~~~~------ 335 (346)
T TIGR03547 266 ANFPGAQENYKNGKLYAHEGLIK--AWSSEVYALDNGKWSKVGKLPQGLAY--GVSVSWNNGVLLIGGENSGGK------ 335 (346)
T ss_pred CCCCCchhhhhcCCccccCCCCc--eeEeeEEEecCCcccccCCCCCCcee--eEEEEcCCEEEEEeccCCCCC------
Confidence 863210000 000000000000 12245555 78999999999988754 456889999999999876543
Q ss_pred eecceEEEEc
Q 016877 361 LVGEIFQFNL 370 (381)
Q Consensus 361 ~~~~v~~yd~ 370 (381)
.+++|+.|-.
T Consensus 336 ~~~~v~~~~~ 345 (346)
T TIGR03547 336 AVTDVYLLSW 345 (346)
T ss_pred EeeeEEEEEe
Confidence 5667877643
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=9.4e-39 Score=296.76 Aligned_cols=268 Identities=19% Similarity=0.274 Sum_probs=203.1
Q ss_pred CCCCCeEEccC----CCCCCCCceEEEECCEEEEEecCCCC-CCcccceEEEeCCCCeEecCCCCC-CCCc-cceEEEEE
Q 016877 97 APELKWEKMKA----APVPRLDGAAIQIKNLLYVFAGYGSI-DYVHSHVDIYNFTDNTWGGRFDMP-REMA-HSHLGMVT 169 (381)
Q Consensus 97 ~~~~~W~~l~~----~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~yd~~~~~W~~~~~~~-~~~~-r~~~~~~~ 169 (381)
+.+.+|.++.+ +|.||..|++++++++|||+||.... ....+++++||+.+++|+.+++++ .|+. +..+++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 35678999976 79999999999999999999998643 334578999999999999988775 3322 34688899
Q ss_pred eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCC-----CCCCcccEEEEECCEEEEEccCCCCCCCCCccceEe
Q 016877 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL-----PVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 244 (381)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-----p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 244 (381)
++++||+|||.+... .++++++||+++++|+.+++| |.+|..|++++++++|||+||............+ .
T Consensus 84 ~~~~iyv~GG~~~~~---~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-~ 159 (341)
T PLN02153 84 VGTKLYIFGGRDEKR---EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF-R 159 (341)
T ss_pred ECCEEEEECCCCCCC---ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc-c
Confidence 999999999987643 368999999999999999877 8899999999999999999998643322211112 2
Q ss_pred eeecCCccCCceEEecCCC---CCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeE
Q 016877 245 AVKDGKPLEKEWRTEIPIP---RGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWK 320 (381)
Q Consensus 245 ~~~~~~~~~~~W~~~~~~p---~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~ 320 (381)
.++.||+.+++|+.++++. ..|..+++++++++||++||........ .......++++.|| .+++|+
T Consensus 160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~g---------G~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPG---------GKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccC---------CccceecCceEEEEcCCCcEE
Confidence 3556779999999987653 5677778889999999999975321000 00011256799999 999999
Q ss_pred EcCC---CCCCCCCcceEEEEECCEEEEEcccccccCC--ceeeeeecceEEEEcCCCceEEee
Q 016877 321 VLPS---MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPT--TKKMVLVGEIFQFNLNTLVAVLNA 379 (381)
Q Consensus 321 ~i~~---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~--~~~~~~~~~v~~yd~~~~~W~~i~ 379 (381)
.++. +|.+|. .+++++++++|||+||....... ...+.+.+++|+||+++++|+.+.
T Consensus 231 ~~~~~g~~P~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 231 EVETTGAKPSARS--VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred eccccCCCCCCcc--eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 9875 455554 45678999999999997532100 011225679999999999999875
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.5e-38 Score=303.43 Aligned_cols=259 Identities=23% Similarity=0.294 Sum_probs=204.0
Q ss_pred eEeecCCC----CCeEEccC---CCCCCCCceEEEECCEEEEEecCCCC-CCcccceEEEeCCCCeEecCCCCC-CCC-c
Q 016877 92 FQDLPAPE----LKWEKMKA---APVPRLDGAAIQIKNLLYVFAGYGSI-DYVHSHVDIYNFTDNTWGGRFDMP-REM-A 161 (381)
Q Consensus 92 ~~~~~~~~----~~W~~l~~---~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~yd~~~~~W~~~~~~~-~~~-~ 161 (381)
++.+++.+ ++|.++++ +|.||..|+++.++++|||+||.... ....+++|+||+++++|+.++.+. .|. +
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~ 218 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLS 218 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCc
Confidence 33446544 79999876 68899999999999999999997543 334467999999999999876542 232 3
Q ss_pred cceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCC---CCCCcccEEEEECCEEEEEccCCCCCCCCC
Q 016877 162 HSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL---PVPRYAPATQLWRGRLHVMGGSGENRYTPE 238 (381)
Q Consensus 162 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 238 (381)
|..+++++++++||||||.+... .++++++||+.+++|++++++ |.+|..|++++++++|||+||.........
T Consensus 219 ~~~~~~v~~~~~lYvfGG~~~~~---~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~ 295 (470)
T PLN02193 219 CLGVRMVSIGSTLYVFGGRDASR---QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKT 295 (470)
T ss_pred ccceEEEEECCEEEEECCCCCCC---CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcce
Confidence 56788999999999999987643 378999999999999999887 889999999999999999999875433332
Q ss_pred ccceEeeeecCCccCCceEEecC---CCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-
Q 016877 239 VDHWSLAVKDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD- 314 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd- 314 (381)
++.||+.+++|+.+++ +|..|..+++++++++||++||.++. ..++++.||
T Consensus 296 -------~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~------------------~~~dv~~yD~ 350 (470)
T PLN02193 296 -------LDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC------------------EVDDVHYYDP 350 (470)
T ss_pred -------EEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC------------------ccCceEEEEC
Confidence 3445688999998764 56667777888999999999997532 246799999
Q ss_pred CCCCeEEcCCC---CCCCCCcceEEEEECCEEEEEcccccccCCc--eeeeeecceEEEEcCCCceEEeec
Q 016877 315 DEMKWKVLPSM---PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTT--KKMVLVGEIFQFNLNTLVAVLNAM 380 (381)
Q Consensus 315 ~~~~W~~i~~~---~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~--~~~~~~~~v~~yd~~~~~W~~i~~ 380 (381)
.+++|+.++.+ |.+|.. ++++.++++|||+||........ ..+.+.+++|+||+++++|+.+..
T Consensus 351 ~t~~W~~~~~~g~~P~~R~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 351 VQDKWTQVETFGVRPSERSV--FASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred CCCEEEEeccCCCCCCCcce--eEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence 89999999765 556554 55689999999999986422111 112367899999999999998864
No 9
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=310.53 Aligned_cols=261 Identities=11% Similarity=0.141 Sum_probs=214.8
Q ss_pred EEEEecCCCCCcccceeeeeeCCCce-eeecC-CCCCCCceeEEeee-cccccccc----cCcceEeecCCCCCeEEccC
Q 016877 35 FFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVKTK-KDVVPKRI----LPATFQDLPAPELKWEKMKA 107 (381)
Q Consensus 35 ~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~-~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~W~~l~~ 107 (381)
.|++.||... .....+++|||.+++ ..+++ +.+|..++++..++ ++..|+.. ..+.+++||+.+++|..+++
T Consensus 259 ~l~~~~g~~~-~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~ 337 (557)
T PHA02713 259 CLVCHDTKYN-VCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP 337 (557)
T ss_pred EEEEecCccc-cCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC
Confidence 4566665222 123468999999999 77777 66777888887776 88877742 23568999999999999999
Q ss_pred CCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCC--
Q 016877 108 APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQC-- 185 (381)
Q Consensus 108 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~-- 185 (381)
||.+|..+++++++++||++||.++.. ..+++++|||.+++|..+++||.+ |..+++++++++||++||.++...
T Consensus 338 m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~~--r~~~~~~~~~g~IYviGG~~~~~~~~ 414 (557)
T PHA02713 338 MIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPIA--LSSYGMCVLDQYIYIIGGRTEHIDYT 414 (557)
T ss_pred CcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCcc--cccccEEEECCEEEEEeCCCcccccc
Confidence 999999999999999999999987544 356799999999999999999985 677888999999999999864310
Q ss_pred -------------CCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCcc
Q 016877 186 -------------RGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL 252 (381)
Q Consensus 186 -------------~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~ 252 (381)
...++.+++|||++++|+.+++|+.+|..+++++++++|||+||.++... ....++.|||.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~------~~~~ve~Ydp~ 488 (557)
T PHA02713 415 SVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKN------VKTCIFRYNTN 488 (557)
T ss_pred cccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCc------cceeEEEecCC
Confidence 01257899999999999999999999999999999999999999764211 11235678899
Q ss_pred C-CceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCC
Q 016877 253 E-KEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSM 325 (381)
Q Consensus 253 ~-~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~ 325 (381)
+ ++|+.+++||..|..+++++++++||++||+++. ..+.+|| .+++|+.+++.
T Consensus 489 ~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~--------------------~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 489 TYNGWELITTTESRLSALHTILHDNTIMMLHCYESY--------------------MLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred CCCCeeEccccCcccccceeEEECCEEEEEeeecce--------------------eehhhcCcccccccchhhh
Confidence 9 8999999999999999999999999999998742 1478899 99999998764
No 10
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.4e-37 Score=292.12 Aligned_cols=266 Identities=18% Similarity=0.183 Sum_probs=191.3
Q ss_pred CCCCeEEccCCC-CCCCCceEEEECCEEEEEecCCC-C----CCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-e
Q 016877 98 PELKWEKMKAAP-VPRLDGAAIQIKNLLYVFAGYGS-I----DYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-D 170 (381)
Q Consensus 98 ~~~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~-~----~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~ 170 (381)
.+++|.+++++| .+|.+++++.++++|||+||... . ...++++|+||+.+++|+.++++ .|+.+..+++++ .
T Consensus 60 ~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~ 138 (376)
T PRK14131 60 PSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLH 138 (376)
T ss_pred CCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEee
Confidence 357899999998 58999999999999999999864 1 13457899999999999999863 244566666665 8
Q ss_pred CCEEEEEcCCCCCC-------------------------------CCCCcceEEEEECCCCcEEeCCCCCC-CCcccEEE
Q 016877 171 GRYIYVVTGQYGPQ-------------------------------CRGPTAHTFVLDTETKKWQDLPPLPV-PRYAPATQ 218 (381)
Q Consensus 171 ~~~iyv~GG~~~~~-------------------------------~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~ 218 (381)
+++||++||..... .....+++++||+.+++|+.++++|. +|..++++
T Consensus 139 ~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v 218 (376)
T PRK14131 139 NGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVV 218 (376)
T ss_pred CCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEE
Confidence 99999999975310 00124789999999999999999996 78889999
Q ss_pred EECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCc--------ceeEEEeCCEEEEEccCCCCCCC
Q 016877 219 LWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP--------HRACVVVDDRLLVIGGQEGDFMA 290 (381)
Q Consensus 219 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~--------~~~~~~~~~~l~v~GG~~~~~~~ 290 (381)
.++++|||+||...... ...+.|. +++|+.+++|+.+++||..+. ++.+++++++||++||.+.....
T Consensus 219 ~~~~~iYv~GG~~~~~~-~~~~~~~---~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~ 294 (376)
T PRK14131 219 IKGNKLWLINGEIKPGL-RTDAVKQ---GKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGAR 294 (376)
T ss_pred EECCEEEEEeeeECCCc-CChhheE---EEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCCh
Confidence 99999999999753321 2233332 345788999999998876542 22356789999999998642100
Q ss_pred C-CCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEE
Q 016877 291 K-PGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQF 368 (381)
Q Consensus 291 ~-~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~y 368 (381)
. .............. ...+..|| ++++|+.+++||.+|..+ +++.++++|||+||...... ..+++++|
T Consensus 295 ~~~~~~~~~~~~~~~~-~~~~e~yd~~~~~W~~~~~lp~~r~~~--~av~~~~~iyv~GG~~~~~~------~~~~v~~~ 365 (376)
T PRK14131 295 ENYQNGKLYAHEGLKK-SWSDEIYALVNGKWQKVGELPQGLAYG--VSVSWNNGVLLIGGETAGGK------AVSDVTLL 365 (376)
T ss_pred hhhhcCCcccccCCcc-eeehheEEecCCcccccCcCCCCccce--EEEEeCCEEEEEcCCCCCCc------EeeeEEEE
Confidence 0 00000000000000 11244566 789999999999988654 56899999999999865432 56799999
Q ss_pred EcCCCceEE
Q 016877 369 NLNTLVAVL 377 (381)
Q Consensus 369 d~~~~~W~~ 377 (381)
+++.+.+..
T Consensus 366 ~~~~~~~~~ 374 (376)
T PRK14131 366 SWDGKKLTV 374 (376)
T ss_pred EEcCCEEEE
Confidence 999888764
No 11
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.5e-37 Score=286.60 Aligned_cols=284 Identities=20% Similarity=0.257 Sum_probs=203.3
Q ss_pred HHHHhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeec-CC-CC
Q 016877 23 FVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLP-AP-EL 100 (381)
Q Consensus 23 ~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 100 (381)
.++-|.+++++++||++||.+.... + ....+.......++.++ +. +.
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~--------~-----------------------~~~~g~~~~~~~v~~~~~~~~~~ 51 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPED--------P-----------------------LAEGGKKKNYKGIYIAKDENSNL 51 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCC--------c-----------------------hhhCCcEEeeeeeEEEecCCCce
Confidence 3556889999999999999654220 0 00011112223455553 33 23
Q ss_pred CeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeE----ecCCCCCCCCccceEEEEEeCCEEEE
Q 016877 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTW----GGRFDMPREMAHSHLGMVTDGRYIYV 176 (381)
Q Consensus 101 ~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~~~~~~r~~~~~~~~~~~iyv 176 (381)
+|..+++||.+|..+++++++++||++||.+.... ++++++||+.+++| +.+++||.+ |..+++++++++||+
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~~--~~~~~~~~~~~~iYv 128 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSER-FSSVYRITLDESKEELICETIGNLPFT--FENGSACYKDGTLYV 128 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCCCCCC-ceeEEEEEEcCCceeeeeeEcCCCCcC--ccCceEEEECCEEEE
Confidence 79999999999998888999999999999876444 57899999999998 678888874 667888999999999
Q ss_pred EcCCCCCCCCCCcceEEEEECCCCcEEeCCCCC-CCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCc
Q 016877 177 VTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 255 (381)
Q Consensus 177 ~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (381)
+||..... ..+++++||+.+++|+.++++| .+|..+++++++++|||+||.+.... .+++.||+.+++
T Consensus 129 ~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~--------~~~~~yd~~~~~ 197 (323)
T TIGR03548 129 GGGNRNGK---PSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAY--------TDGYKYSPKKNQ 197 (323)
T ss_pred EeCcCCCc---cCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccc--------cceEEEecCCCe
Confidence 99975432 3789999999999999999988 58999999999999999999764321 123566799999
Q ss_pred eEEecCC-----CCCCccee-EEEeCCEEEEEccCCCCCCCC----------CCCCccc-----cccCceeecCceeEeC
Q 016877 256 WRTEIPI-----PRGGPHRA-CVVVDDRLLVIGGQEGDFMAK----------PGSPIFK-----CSRRNEVVYDDVYMLD 314 (381)
Q Consensus 256 W~~~~~~-----p~~~~~~~-~~~~~~~l~v~GG~~~~~~~~----------~~~~~~~-----~~~~~~~~~~~v~~yd 314 (381)
|+.++++ |+.+..++ ++..+++||++||.+.....+ ..++... .......+.++++.||
T Consensus 198 W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 277 (323)
T TIGR03548 198 WQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYN 277 (323)
T ss_pred eEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEE
Confidence 9998765 33333333 445579999999986421000 0000000 0000011246799999
Q ss_pred -CCCCeEEcCCCC-CCCCCcceEEEEECCEEEEEccccccc
Q 016877 315 -DEMKWKVLPSMP-KPDSHIEFAWVLVNNSIVIVGGTTEKH 353 (381)
Q Consensus 315 -~~~~W~~i~~~~-~~~~~~~~~~~~~~~~l~v~GG~~~~~ 353 (381)
.+++|+.++++| .+|. +++++.++++||++||....+
T Consensus 278 ~~~~~W~~~~~~p~~~r~--~~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 278 VRTGKWKSIGNSPFFARC--GAALLLTGNNIFSINGELKPG 316 (323)
T ss_pred CCCCeeeEcccccccccC--chheEEECCEEEEEeccccCC
Confidence 899999999876 3444 456799999999999986544
No 12
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.4e-37 Score=304.43 Aligned_cols=255 Identities=21% Similarity=0.291 Sum_probs=210.9
Q ss_pred ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe
Q 016877 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD 170 (381)
Q Consensus 91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~ 170 (381)
.+..|++.+++|..+++.|. +..+++++++++||++||.+......+++++||+.+++|..+++||.| |..++++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--R~~~~~~~~ 341 (534)
T PHA03098 265 NYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP--RKNPGVTVF 341 (534)
T ss_pred eeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc--cccceEEEE
Confidence 35578888899998877664 445688899999999999987666667899999999999999999874 778899999
Q ss_pred CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCC
Q 016877 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK 250 (381)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~ 250 (381)
+++||++||.+... ..+++++||+.+++|+.++++|.+|..|++++++++||++||....... .-.++.||
T Consensus 342 ~~~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~------~~~v~~yd 412 (534)
T PHA03098 342 NNRIYVIGGIYNSI---SLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDEL------LKTVECFS 412 (534)
T ss_pred CCEEEEEeCCCCCE---ecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcc------cceEEEEe
Confidence 99999999987433 3788999999999999999999999999999999999999997532111 12345567
Q ss_pred ccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCC
Q 016877 251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD 329 (381)
Q Consensus 251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~ 329 (381)
+.+++|+.++++|.++..++++..+++||++||...... ....+.++.|| .+++|+.+++++.+|
T Consensus 413 ~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--------------~~~~~~v~~yd~~~~~W~~~~~~~~~r 478 (534)
T PHA03098 413 LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN--------------IKVYNIVESYNPVTNKWTELSSLNFPR 478 (534)
T ss_pred CCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC--------------CcccceEEEecCCCCceeeCCCCCccc
Confidence 999999999999999988899999999999999864311 01134599999 899999999998887
Q ss_pred CCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeec
Q 016877 330 SHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAM 380 (381)
Q Consensus 330 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~ 380 (381)
..+ +++..+++||++||.+... ..+++++||+++++|..++.
T Consensus 479 ~~~--~~~~~~~~iyv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 479 INA--SLCIFNNKIYVVGGDKYEY-------YINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ccc--eEEEECCEEEEEcCCcCCc-------ccceeEEEeCCCCEEEecCC
Confidence 654 4577899999999987543 35689999999999998765
No 13
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=284.82 Aligned_cols=210 Identities=18% Similarity=0.305 Sum_probs=177.7
Q ss_pred EEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEE
Q 016877 117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD 196 (381)
Q Consensus 117 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd 196 (381)
++.+++.||++||.+... ..+++++||+.+++|..+++|+.| |..+++++.+++||++||.++ .+.+++||
T Consensus 267 ~~~~~~~lyviGG~~~~~-~~~~v~~Ydp~~~~W~~~~~m~~~--r~~~~~v~~~~~iYviGG~~~------~~sve~yd 337 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNE-IHNNAIAVNYISNNWIPIPPMNSP--RLYASGVPANNKLYVVGGLPN------PTSVERWF 337 (480)
T ss_pred eEEECCEEEEEcCCCCCC-cCCeEEEEECCCCEEEECCCCCch--hhcceEEEECCEEEEECCcCC------CCceEEEE
Confidence 455899999999986543 456799999999999999999884 677888899999999999753 25689999
Q ss_pred CCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCC
Q 016877 197 TETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276 (381)
Q Consensus 197 ~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 276 (381)
+.+++|+.+++||.+|..+++++++++||++||.... .. .++.|||.+++|+.+++|+.++..++++++++
T Consensus 338 p~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~-------~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~ 408 (480)
T PHA02790 338 HGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DT-------TTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR 408 (480)
T ss_pred CCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--Cc-------cEEEEeCCCCEEEeCCCCCCccccceEEEECC
Confidence 9999999999999999999999999999999997532 12 23455799999999999999988888999999
Q ss_pred EEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCC
Q 016877 277 RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPT 355 (381)
Q Consensus 277 ~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~ 355 (381)
+||++||. +..|| ++++|+.+++|+.+|..+ ++++++++||++||.+...
T Consensus 409 ~IYv~GG~-------------------------~e~ydp~~~~W~~~~~m~~~r~~~--~~~v~~~~IYviGG~~~~~-- 459 (480)
T PHA02790 409 RLFLVGRN-------------------------AEFYCESSNTWTLIDDPIYPRDNP--ELIIVDNKLLLIGGFYRGS-- 459 (480)
T ss_pred EEEEECCc-------------------------eEEecCCCCcEeEcCCCCCCcccc--EEEEECCEEEEECCcCCCc--
Confidence 99999984 34566 899999999999888764 5689999999999987432
Q ss_pred ceeeeeecceEEEEcCCCceEEe
Q 016877 356 TKKMVLVGEIFQFNLNTLVAVLN 378 (381)
Q Consensus 356 ~~~~~~~~~v~~yd~~~~~W~~i 378 (381)
..+.+++||+++++|+.-
T Consensus 460 -----~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 460 -----YIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred -----ccceEEEEECCCCeEEec
Confidence 345799999999999763
No 14
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=291.15 Aligned_cols=239 Identities=15% Similarity=0.309 Sum_probs=198.1
Q ss_pred hhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEcc
Q 016877 27 LGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMK 106 (381)
Q Consensus 27 ~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~ 106 (381)
|+++++++.||++||.+.... ....++.||+.+++|.+++
T Consensus 288 ~~~~~~~~~lyv~GG~~~~~~----------------------------------------~~~~v~~yd~~~~~W~~~~ 327 (534)
T PHA03098 288 FGSVVLNNVIYFIGGMNKNNL----------------------------------------SVNSVVSYDTKTKSWNKVP 327 (534)
T ss_pred ceEEEECCEEEEECCCcCCCC----------------------------------------eeccEEEEeCCCCeeeECC
Confidence 578888999999998543211 1236788999999999999
Q ss_pred CCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCC
Q 016877 107 AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCR 186 (381)
Q Consensus 107 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 186 (381)
++|.+|..++++.++++||++||.+... ..+++++||+.+++|+.++++|.| |..++++..+++||++||......
T Consensus 328 ~~~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~lp~~--r~~~~~~~~~~~iYv~GG~~~~~~- 403 (534)
T PHA03098 328 ELIYPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEPPLIFP--RYNPCVVNVNNLIYVIGGISKNDE- 403 (534)
T ss_pred CCCcccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCCCcCcC--CccceEEEECCEEEEECCcCCCCc-
Confidence 9999999999999999999999987433 457799999999999999999884 788889999999999999754432
Q ss_pred CCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCC
Q 016877 187 GPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG 266 (381)
Q Consensus 187 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~ 266 (381)
.++++++||+.+++|+.++++|.+|..|++++++++||++||...... ...+. .++.||+.+++|+.++++|.++
T Consensus 404 -~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~-~v~~yd~~~~~W~~~~~~~~~r 478 (534)
T PHA03098 404 -LLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN---IKVYN-IVESYNPVTNKWTELSSLNFPR 478 (534)
T ss_pred -ccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC---Ccccc-eEEEecCCCCceeeCCCCCccc
Confidence 368999999999999999999999999999999999999999764321 11122 2677889999999999998888
Q ss_pred cceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCC
Q 016877 267 PHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSH 331 (381)
Q Consensus 267 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~ 331 (381)
..++++.++++||++||.+... ..++++.|| ++++|+.++.+|.....
T Consensus 479 ~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~~~~ 527 (534)
T PHA03098 479 INASLCIFNNKIYVVGGDKYEY-----------------YINEIEVYDDKTNTWTLFCKFPKVIGS 527 (534)
T ss_pred ccceEEEECCEEEEEcCCcCCc-----------------ccceeEEEeCCCCEEEecCCCcccccc
Confidence 8888899999999999987432 246799999 99999999887765443
No 15
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=4.4e-36 Score=250.82 Aligned_cols=272 Identities=17% Similarity=0.308 Sum_probs=211.8
Q ss_pred HhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEc
Q 016877 26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKM 105 (381)
Q Consensus 26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l 105 (381)
-|+++.|+++||.|||.=.+.. ||- + ..-.+..+|..+-+|+++
T Consensus 16 NHAavaVG~riYSFGGYCsGed------y~~--~----------------------------~piDVH~lNa~~~RWtk~ 59 (392)
T KOG4693|consen 16 NHAAVAVGSRIYSFGGYCSGED------YDA--K----------------------------DPIDVHVLNAENYRWTKM 59 (392)
T ss_pred cceeeeecceEEecCCcccccc------ccc--C----------------------------CcceeEEeeccceeEEec
Confidence 7999999999999999332221 110 0 011345555556666665
Q ss_pred cC-------------CCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCC-CCCCccceEEEEEeC
Q 016877 106 KA-------------APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTDG 171 (381)
Q Consensus 106 ~~-------------~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~~ 171 (381)
++ .|..|.+|+++.+++++||.||.+.....-+.+++||++++.|.+..-- -.|.+|.+|++++.+
T Consensus 60 pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g 139 (392)
T KOG4693|consen 60 PPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG 139 (392)
T ss_pred CcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEEC
Confidence 43 5678999999999999999999988666667899999999999984311 113379999999999
Q ss_pred CEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC---CCCCCCcccEEEEECCEEEEEccCCCC--CCCCCccceEeee
Q 016877 172 RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGEN--RYTPEVDHWSLAV 246 (381)
Q Consensus 172 ~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~--~~~~~~~~~~~~~ 246 (381)
+.+|||||+..... ..+++++.+|..|.+|+.+. ..|.-|..|++.++++.+|||||..+. .+-...+.|.-.+
T Consensus 140 n~MyiFGGye~~a~-~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i 218 (392)
T KOG4693|consen 140 NQMYIFGGYEEDAQ-RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTI 218 (392)
T ss_pred cEEEEecChHHHHH-hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhccee
Confidence 99999999866532 34789999999999999986 456778999999999999999998653 2333455666566
Q ss_pred ecCCccCCceEEecC---CCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEc
Q 016877 247 KDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVL 322 (381)
Q Consensus 247 ~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i 322 (381)
..+|..+..|...++ .|.+|.+|+..+++++||+|||+++.- ..-.+|+|+|| .+..|+.|
T Consensus 219 ~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l---------------n~HfndLy~FdP~t~~W~~I 283 (392)
T KOG4693|consen 219 MALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL---------------NVHFNDLYCFDPKTSMWSVI 283 (392)
T ss_pred EEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhh---------------hhhhcceeecccccchheee
Confidence 667789999998754 578888999999999999999998652 23478999999 89999988
Q ss_pred CC---CCCCCCCcceEEEEECCEEEEEccccc
Q 016877 323 PS---MPKPDSHIEFAWVLVNNSIVIVGGTTE 351 (381)
Q Consensus 323 ~~---~~~~~~~~~~~~~~~~~~l~v~GG~~~ 351 (381)
.. -|.+|.+. ++++.++++|+|||...
T Consensus 284 ~~~Gk~P~aRRRq--C~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 284 SVRGKYPSARRRQ--CSVVSGGKVYLFGGTSP 313 (392)
T ss_pred eccCCCCCcccce--eEEEECCEEEEecCCCC
Confidence 53 47777774 35899999999999764
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.5e-35 Score=276.16 Aligned_cols=255 Identities=20% Similarity=0.292 Sum_probs=189.8
Q ss_pred ccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeC--CCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCC
Q 016877 105 MKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNF--TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYG 182 (381)
Q Consensus 105 l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 182 (381)
+++||.+|..+++++++++|||+||... +++++||+ .+++|..+++||.. +|..+++++++++||++||...
T Consensus 1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~-~R~~~~~~~~~~~iYv~GG~~~ 74 (346)
T TIGR03547 1 LPDLPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIADFPGG-PRNQAVAAAIDGKLYVFGGIGK 74 (346)
T ss_pred CCCCCccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceECCCCCCC-CcccceEEEECCEEEEEeCCCC
Confidence 4789999999888899999999999742 46899996 57899999999842 4788899999999999999854
Q ss_pred CC---CCCCcceEEEEECCCCcEEeCC-CCCCCCcccEEE-EECCEEEEEccCCCCCC----------CCCc--------
Q 016877 183 PQ---CRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQ-LWRGRLHVMGGSGENRY----------TPEV-------- 239 (381)
Q Consensus 183 ~~---~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~----------~~~~-------- 239 (381)
.. ....++++|+||+.+++|+.++ ++|.+|..++++ +++++||++||.+...+ ....
T Consensus 75 ~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (346)
T TIGR03547 75 ANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIA 154 (346)
T ss_pred CCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHH
Confidence 22 1123688999999999999997 567778888777 79999999999864210 0000
Q ss_pred ---------cceEeeeecCCccCCceEEecCCCC-CCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCc
Q 016877 240 ---------DHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD 309 (381)
Q Consensus 240 ---------~~~~~~~~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
..+...++.|||.+++|+.+++||. .+..++++.++++||++||...... ...+
T Consensus 155 ~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~----------------~~~~ 218 (346)
T TIGR03547 155 AYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGL----------------RTAE 218 (346)
T ss_pred HHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCc----------------cchh
Confidence 0112346778899999999999985 5777788899999999999753210 1223
Q ss_pred e--eEeC-CCCCeEEcCCCCCCCC-----CcceEEEEECCEEEEEcccccccCC---------ceee-eeecceEEEEcC
Q 016877 310 V--YMLD-DEMKWKVLPSMPKPDS-----HIEFAWVLVNNSIVIVGGTTEKHPT---------TKKM-VLVGEIFQFNLN 371 (381)
Q Consensus 310 v--~~yd-~~~~W~~i~~~~~~~~-----~~~~~~~~~~~~l~v~GG~~~~~~~---------~~~~-~~~~~v~~yd~~ 371 (381)
+ |+|| ++++|+.+++||.+|. +.++++++++++|||+||.+..... ...+ .....+++||++
T Consensus 219 ~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~ 298 (346)
T TIGR03547 219 VKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD 298 (346)
T ss_pred eEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec
Confidence 4 5555 6789999999987763 2344568899999999998632100 0000 012358999999
Q ss_pred CCceEEeecC
Q 016877 372 TLVAVLNAML 381 (381)
Q Consensus 372 ~~~W~~i~~l 381 (381)
+++|+.++.|
T Consensus 299 ~~~W~~~~~l 308 (346)
T TIGR03547 299 NGKWSKVGKL 308 (346)
T ss_pred CCcccccCCC
Confidence 9999988765
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=4e-35 Score=282.96 Aligned_cols=189 Identities=19% Similarity=0.305 Sum_probs=165.2
Q ss_pred ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe
Q 016877 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD 170 (381)
Q Consensus 91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~ 170 (381)
.+++||+.+++|..+++||.+|..++++.++++||++||.+.. +++++||+.+++|..+++||.+ |..+++++.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~~--r~~~~~~~~ 361 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLKP--RCNPAVASI 361 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCCC--CcccEEEEE
Confidence 5677888889999999999999999999999999999997532 4699999999999999999984 778899999
Q ss_pred CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCC
Q 016877 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK 250 (381)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~ 250 (381)
+++||++||.++. .+.+++|||++++|+.+++|+.+|..+++++++++||++||. . +.||
T Consensus 362 ~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~-------e~yd 421 (480)
T PHA02790 362 NNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------A-------EFYC 421 (480)
T ss_pred CCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------e-------EEec
Confidence 9999999997542 367899999999999999999999999999999999999983 1 2356
Q ss_pred ccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEc
Q 016877 251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVL 322 (381)
Q Consensus 251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i 322 (381)
|.+++|+.+++||.+|..+++++++++||++||.+... ..+.+..|| ++++|+..
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~-----------------~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGS-----------------YIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCc-----------------ccceEEEEECCCCeEEec
Confidence 88999999999999998889999999999999986331 135688999 99999865
No 18
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=4.3e-34 Score=263.63 Aligned_cols=241 Identities=17% Similarity=0.165 Sum_probs=182.6
Q ss_pred CCCCceEEEECCEEEEEecCCCCC---------CcccceEEEe-CCC-CeEecCCCCCCCCccceEEEEEeCCEEEEEcC
Q 016877 111 PRLDGAAIQIKNLLYVFAGYGSID---------YVHSHVDIYN-FTD-NTWGGRFDMPREMAHSHLGMVTDGRYIYVVTG 179 (381)
Q Consensus 111 ~r~~~~~~~~~~~iyv~GG~~~~~---------~~~~~~~~yd-~~~-~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG 179 (381)
.++++.++++++.|||+||.+..+ ...+++++|+ +.. .+|..+++||.| |..+++++++++||++||
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~--r~~~~~~~~~~~lyviGG 80 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYE--AAYGASVSVENGIYYIGG 80 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCcc--ccceEEEEECCEEEEEcC
Confidence 456788899999999999986543 2345788886 332 379999999885 555667788999999999
Q ss_pred CCCCCCCCCcceEEEEECCCCcE----EeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCc
Q 016877 180 QYGPQCRGPTAHTFVLDTETKKW----QDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 255 (381)
Q Consensus 180 ~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (381)
.++.. .++++++||+.+++| +.+++||.+|..|++++++++|||+||....... ..++.||+.+++
T Consensus 81 ~~~~~---~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~-------~~v~~yd~~~~~ 150 (323)
T TIGR03548 81 SNSSE---RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPS-------NKSYLFNLETQE 150 (323)
T ss_pred CCCCC---CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccC-------ceEEEEcCCCCC
Confidence 87643 378999999999988 7889999999999999999999999997543222 235566799999
Q ss_pred eEEecCCCC-CCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCC---CCCC
Q 016877 256 WRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMP---KPDS 330 (381)
Q Consensus 256 W~~~~~~p~-~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~---~~~~ 330 (381)
|+.++++|. .|..++++.++++||++||.+.. ...++++|| .+++|+.+++++ .|+.
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~------------------~~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 212 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI------------------AYTDGYKYSPKKNQWQKVADPTTDSEPIS 212 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCc------------------cccceEEEecCCCeeEECCCCCCCCCcee
Confidence 999988874 67777888999999999998532 134578999 899999998763 4444
Q ss_pred CcceE-EEEECCEEEEEcccccccCC-------------------------ceeeeeecceEEEEcCCCceEEeecC
Q 016877 331 HIEFA-WVLVNNSIVIVGGTTEKHPT-------------------------TKKMVLVGEIFQFNLNTLVAVLNAML 381 (381)
Q Consensus 331 ~~~~~-~~~~~~~l~v~GG~~~~~~~-------------------------~~~~~~~~~v~~yd~~~~~W~~i~~l 381 (381)
+++++ +++.+++||++||.+..... ...-.+.+++++||+++++|+.++.|
T Consensus 213 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~ 289 (323)
T TIGR03548 213 LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS 289 (323)
T ss_pred ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc
Confidence 33333 45557999999998742100 00000235799999999999988753
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=9.6e-34 Score=266.05 Aligned_cols=259 Identities=18% Similarity=0.243 Sum_probs=191.3
Q ss_pred CeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCC--CCeEecCCCCCCCCccceEEEEEeCCEEEEEc
Q 016877 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFT--DNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT 178 (381)
Q Consensus 101 ~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~G 178 (381)
.++.+++||.||..+++++++++|||+||... +.+++||+. +++|..++++|.+ +|..++++..+++||++|
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~-~r~~~~~v~~~~~IYV~G 91 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIAAFPGG-PREQAVAAFIDGKLYVFG 91 (376)
T ss_pred ecccCCCCCcCccCCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEECCcCCCC-CcccceEEEECCEEEEEc
Confidence 56788999999998899999999999999742 348899987 4789999998753 478888999999999999
Q ss_pred CCCCCC---CCCCcceEEEEECCCCcEEeCCC-CCCCCcccEEEE-ECCEEEEEccCCCCCC------------------
Q 016877 179 GQYGPQ---CRGPTAHTFVLDTETKKWQDLPP-LPVPRYAPATQL-WRGRLHVMGGSGENRY------------------ 235 (381)
Q Consensus 179 G~~~~~---~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~lyv~GG~~~~~~------------------ 235 (381)
|..... ....++++++||+.+++|+.+++ +|.++..|++++ .+++||++||.....+
T Consensus 92 G~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~ 171 (376)
T PRK14131 92 GIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKD 171 (376)
T ss_pred CCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhh
Confidence 986411 11236899999999999999985 467777788776 8999999999753210
Q ss_pred -------CCCcc--ceEeeeecCCccCCceEEecCCCC-CCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCcee
Q 016877 236 -------TPEVD--HWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV 305 (381)
Q Consensus 236 -------~~~~~--~~~~~~~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~ 305 (381)
..... .+...++.||+.+++|+.++++|. .+.+++++.++++||++||......
T Consensus 172 ~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~---------------- 235 (376)
T PRK14131 172 KINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGL---------------- 235 (376)
T ss_pred hhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCc----------------
Confidence 00000 123457788899999999998886 6767788889999999999743210
Q ss_pred ecCcee--EeC-CCCCeEEcCCCCCCCCC------cceEEEEECCEEEEEcccccccCC---------ceeee-eecceE
Q 016877 306 VYDDVY--MLD-DEMKWKVLPSMPKPDSH------IEFAWVLVNNSIVIVGGTTEKHPT---------TKKMV-LVGEIF 366 (381)
Q Consensus 306 ~~~~v~--~yd-~~~~W~~i~~~~~~~~~------~~~~~~~~~~~l~v~GG~~~~~~~---------~~~~~-~~~~v~ 366 (381)
...++| +|| ++++|+.+++||.+|.. .++.+++.+++|||+||.+..... ...+. ....++
T Consensus 236 ~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e 315 (376)
T PRK14131 236 RTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDE 315 (376)
T ss_pred CChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehh
Confidence 123344 556 78999999999877632 223357899999999998642210 00000 012478
Q ss_pred EEEcCCCceEEeecC
Q 016877 367 QFNLNTLVAVLNAML 381 (381)
Q Consensus 367 ~yd~~~~~W~~i~~l 381 (381)
+||+++++|+.++.|
T Consensus 316 ~yd~~~~~W~~~~~l 330 (376)
T PRK14131 316 IYALVNGKWQKVGEL 330 (376)
T ss_pred eEEecCCcccccCcC
Confidence 999999999988764
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=236.04 Aligned_cols=258 Identities=19% Similarity=0.306 Sum_probs=202.8
Q ss_pred CeEEccCCCCCCCCceEEEECCEEEEEecCCCCC-----CcccceEEEeCCCCeEecCCCC--------C---CCCccce
Q 016877 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSID-----YVHSHVDIYNFTDNTWGGRFDM--------P---REMAHSH 164 (381)
Q Consensus 101 ~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~--------~---~~~~r~~ 164 (381)
+|+.--+--..|-.|+++.++.+||-|||+-... .. -++.++|..+-+|+++++- + .|..|++
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~p-iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYG 81 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDP-IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYG 81 (392)
T ss_pred eEEEEecCCcccccceeeeecceEEecCCcccccccccCCc-ceeEEeeccceeEEecCcccccccccCCCCccchhhcC
Confidence 4654433345678999999999999999974322 22 2599999999999998761 1 2556999
Q ss_pred EEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC---CCCCCCcccEEEEECCEEEEEccCCCCCCCCCccc
Q 016877 165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDH 241 (381)
Q Consensus 165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 241 (381)
|+++.+++++|+.||...... ..|.++.|||++++|.+.. -+|.+|.+|++++.++.+|||||+.. ..++
T Consensus 82 HtvV~y~d~~yvWGGRND~eg--aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~-----~a~~ 154 (392)
T KOG4693|consen 82 HTVVEYQDKAYVWGGRNDDEG--ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEE-----DAQR 154 (392)
T ss_pred ceEEEEcceEEEEcCccCccc--ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHH-----HHHh
Confidence 999999999999999876543 3789999999999998875 58999999999999999999999865 3556
Q ss_pred eEeeeecCCccCCceEEec---CCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCC
Q 016877 242 WSLAVKDGKPLEKEWRTEI---PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEM 317 (381)
Q Consensus 242 ~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~ 317 (381)
|+.++..+|..+.+|+.+- ..|+-|-.|++.++++.+|||||.....+. .....+.++++|..+| .+.
T Consensus 155 FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gp--------fHs~~e~Yc~~i~~ld~~T~ 226 (392)
T KOG4693|consen 155 FSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGP--------FHSIHEQYCDTIMALDLATG 226 (392)
T ss_pred hhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCC--------ccchhhhhcceeEEEecccc
Confidence 6666666678999999873 346777778999999999999998765431 1234556888899999 999
Q ss_pred CeEEcCCCC-CCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEee
Q 016877 318 KWKVLPSMP-KPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNA 379 (381)
Q Consensus 318 ~W~~i~~~~-~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~ 379 (381)
.|...++.+ .|-.+..+++.++|++||+|||+++.-+. -++|+|+|||.+..|..|.
T Consensus 227 aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~-----HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 227 AWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV-----HFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred ccccCCCCCcCCCcccccceEEEcceEEEecccchhhhh-----hhcceeecccccchheeee
Confidence 999886532 22334456789999999999999865431 2679999999999999886
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=7.3e-28 Score=231.32 Aligned_cols=249 Identities=21% Similarity=0.293 Sum_probs=197.3
Q ss_pred HHHHHhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCC
Q 016877 22 IFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELK 101 (381)
Q Consensus 22 ~~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (381)
.+++.|+++++++.+|+|||......+.. ..++.+|..+..
T Consensus 59 ~~R~~hs~~~~~~~~~vfGG~~~~~~~~~---------------------------------------~dl~~~d~~~~~ 99 (482)
T KOG0379|consen 59 IPRAGHSAVLIGNKLYVFGGYGSGDRLTD---------------------------------------LDLYVLDLESQL 99 (482)
T ss_pred chhhccceeEECCEEEEECCCCCCCcccc---------------------------------------ceeEEeecCCcc
Confidence 45679999999999999999555443211 046667777778
Q ss_pred eEEcc---CCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC-CCccceEEEEEeCCEEEEE
Q 016877 102 WEKMK---AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EMAHSHLGMVTDGRYIYVV 177 (381)
Q Consensus 102 W~~l~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~r~~~~~~~~~~~iyv~ 177 (381)
|.... ..|.+|.+|.++.++++||+|||.+......++++.||+.+++|..+..... |.+|..|+++++++++|||
T Consensus 100 w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vf 179 (482)
T KOG0379|consen 100 WTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVF 179 (482)
T ss_pred cccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEE
Confidence 87654 3778999999999999999999998644456889999999999999876655 6679999999999999999
Q ss_pred cCCCCCCCCCCcceEEEEECCCCcEEeCC---CCCCCCcccEEEEECCEEEEEccCC-CCCCCCCccceEeeeecCCccC
Q 016877 178 TGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSG-ENRYTPEVDHWSLAVKDGKPLE 253 (381)
Q Consensus 178 GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~~~~~~~~~~~~~ 253 (381)
||.+.... .++++|.||+++.+|.++. +.|.||++|++++++++++++||.+ +..+.. +++.+|..+
T Consensus 180 GG~~~~~~--~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~-------D~~~ldl~~ 250 (482)
T KOG0379|consen 180 GGIGGTGD--SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLN-------DVHILDLST 250 (482)
T ss_pred CCccCccc--ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceec-------ceEeeeccc
Confidence 99887653 4899999999999999986 6788999999999999999999987 433343 334445778
Q ss_pred CceEEec---CCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCC----
Q 016877 254 KEWRTEI---PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSM---- 325 (381)
Q Consensus 254 ~~W~~~~---~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~---- 325 (381)
.+|..+. ..|.+|..|+.+..+.+++++||..... .....++|.|| ++..|+.+...
T Consensus 251 ~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~---------------~~~l~~~~~l~~~~~~w~~~~~~~~~~ 315 (482)
T KOG0379|consen 251 WEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPK---------------QEPLGDLYGLDLETLVWSKVESVGVVR 315 (482)
T ss_pred ceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccc---------------cccccccccccccccceeeeecccccc
Confidence 9999664 3578888889999999999999986430 01366799999 89999988654
Q ss_pred CCCCCCcc
Q 016877 326 PKPDSHIE 333 (381)
Q Consensus 326 ~~~~~~~~ 333 (381)
|.++..+.
T Consensus 316 ~~~~~~~~ 323 (482)
T KOG0379|consen 316 PSPRLGHA 323 (482)
T ss_pred cccccccc
Confidence 34444433
No 22
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.96 E-value=3.8e-28 Score=214.59 Aligned_cols=261 Identities=19% Similarity=0.293 Sum_probs=196.0
Q ss_pred cCCCCCCCCceEEEE--CCEEEEEecC--CCCC-CcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeC-CEEEEEcC
Q 016877 106 KAAPVPRLDGAAIQI--KNLLYVFAGY--GSID-YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDG-RYIYVVTG 179 (381)
Q Consensus 106 ~~~p~~r~~~~~~~~--~~~iyv~GG~--~~~~-~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~-~~iyv~GG 179 (381)
.+.|.||.+++++.. .+.|++|||. +++. .+.++++.||.++++|+.+.+...|.+|+.|.++++. +.+|+|||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 357899999988765 3489999995 4433 3568999999999999998766555578888887765 89999999
Q ss_pred CCCC-C--CCCCcceEEEEECCCCcEEeCC--CCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCC
Q 016877 180 QYGP-Q--CRGPTAHTFVLDTETKKWQDLP--PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK 254 (381)
Q Consensus 180 ~~~~-~--~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (381)
.... . .+--.+++|.||..+++|+++. .-|.||++|-+++..++|++|||+.+. +....|-.+++.||..+-
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~---nr~y~YyNDvy~FdLdty 217 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS---NRDYIYYNDVYAFDLDTY 217 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecC---CCceEEeeeeEEEeccce
Confidence 7432 1 1122689999999999999986 578999999999999999999998763 334456667788888899
Q ss_pred ceEEecC---CCCCCcceeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CC-----CCeEEcCC
Q 016877 255 EWRTEIP---IPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE-----MKWKVLPS 324 (381)
Q Consensus 255 ~W~~~~~---~p~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~-----~~W~~i~~ 324 (381)
+|+.+.| -|.+|+++.+.+. ++.|||+|||+.....+ ........+|++.++ +. -.|+.+.+
T Consensus 218 kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK--------~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp 289 (521)
T KOG1230|consen 218 KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKK--------DVDKGTRHSDMFLLKPEDGREDKWVWTKVKP 289 (521)
T ss_pred eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhh--------hhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence 9999744 3666666666666 99999999998653211 111223567889887 43 46777765
Q ss_pred ---CCCCCCCcceEEEEECCEEEEEccccccc--CCceeeeeecceEEEEcCCCceEEe
Q 016877 325 ---MPKPDSHIEFAWVLVNNSIVIVGGTTEKH--PTTKKMVLVGEIFQFNLNTLVAVLN 378 (381)
Q Consensus 325 ---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~--~~~~~~~~~~~v~~yd~~~~~W~~i 378 (381)
-|.||..++++ +..+++-|.|||..+.. ...-.+.++||++.||+..++|...
T Consensus 290 ~g~kPspRsgfsv~-va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 290 SGVKPSPRSGFSVA-VAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred CCCCCCCCCceeEE-EecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 37788776653 56677999999987522 2223356899999999999999754
No 23
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.96 E-value=3.8e-27 Score=226.42 Aligned_cols=243 Identities=26% Similarity=0.434 Sum_probs=196.4
Q ss_pred CCCCCCCCceEEEECCEEEEEecCCCCCCccc-ceEEEeCCCCeEecCCCC-CCCCccceEEEEEeCCEEEEEcCCCCCC
Q 016877 107 AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHS-HVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTDGRYIYVVTGQYGPQ 184 (381)
Q Consensus 107 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 184 (381)
..|.+|..|+++.+++++|||||........+ +++++|..+..|.....- ..|.+|..|+++.++++||+|||.+...
T Consensus 56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~ 135 (482)
T KOG0379|consen 56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY 135 (482)
T ss_pred CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence 47889999999999999999999876554333 699999999999986432 3345799999999999999999988632
Q ss_pred CCCCcceEEEEECCCCcEEeCC---CCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEe--
Q 016877 185 CRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE-- 259 (381)
Q Consensus 185 ~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-- 259 (381)
..+++++.||+.|++|+.+. ..|.+|.+|+++++++++|||||.....- +..+++.||..+.+|.++
T Consensus 136 --~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~------~~ndl~i~d~~~~~W~~~~~ 207 (482)
T KOG0379|consen 136 --RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD------SLNDLHIYDLETSTWSELDT 207 (482)
T ss_pred --CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc------ceeeeeeeccccccceeccc
Confidence 23899999999999999886 46899999999999999999999875431 344556667889999986
Q ss_pred -cCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCC---CCCCCCCcce
Q 016877 260 -IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPS---MPKPDSHIEF 334 (381)
Q Consensus 260 -~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~---~~~~~~~~~~ 334 (381)
.+.|.+|.+|+++..++++++|||.... ..+++|+|.+| .+..|..+.+ +|.+|.. +
T Consensus 208 ~g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~--h 269 (482)
T KOG0379|consen 208 QGEAPSPRYGHAMVVVGNKLLVFGGGDDG----------------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSG--H 269 (482)
T ss_pred CCCCCCCCCCceEEEECCeEEEEeccccC----------------CceecceEeeecccceeeeccccCCCCCCcce--e
Confidence 3457788888999999999999998722 22689999999 8899997653 5666665 5
Q ss_pred EEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeec
Q 016877 335 AWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAM 380 (381)
Q Consensus 335 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~ 380 (381)
+++..+.+++++||...... ..+.++|.||.+++.|..+..
T Consensus 270 ~~~~~~~~~~l~gG~~~~~~-----~~l~~~~~l~~~~~~w~~~~~ 310 (482)
T KOG0379|consen 270 SLTVSGDHLLLFGGGTDPKQ-----EPLGDLYGLDLETLVWSKVES 310 (482)
T ss_pred eeEEECCEEEEEcCCccccc-----ccccccccccccccceeeeec
Confidence 56799999999999876410 035789999999999998764
No 24
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.4e-26 Score=209.56 Aligned_cols=293 Identities=15% Similarity=0.209 Sum_probs=214.0
Q ss_pred CCCCCCceeEEeee---cccccccccCcceEeecCCCCCeEEc---cCCCCCCCCceEEEECCEEEEEecCCCCCCcccc
Q 016877 66 NGPQKGENIGVKTK---KDVVPKRILPATFQDLPAPELKWEKM---KAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSH 139 (381)
Q Consensus 66 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~l---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 139 (381)
+.||++|....+-. ++..+...+-+.+..||..+++|..- .+.|.+...|+.+-.+.+||+|||+..-+.+.++
T Consensus 30 PrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNd 109 (830)
T KOG4152|consen 30 PRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSND 109 (830)
T ss_pred CCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccch
Confidence 66788777665544 34444456667899999999999653 4688888888888889999999999988888887
Q ss_pred eEEEeCCCCeEecCCCC-----CCCCccceEEEEEeCCEEEEEcCCCCCCCC------CCcceEEEEECCCC----cEEe
Q 016877 140 VDIYNFTDNTWGGRFDM-----PREMAHSHLGMVTDGRYIYVVTGQYGPQCR------GPTAHTFVLDTETK----KWQD 204 (381)
Q Consensus 140 ~~~yd~~~~~W~~~~~~-----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~------~~~~~~~~yd~~~~----~W~~ 204 (381)
++.+-...-.|+++.+- +.|.+|-+|+..+++++-|+|||...+... .+++|+|..++.-. .|..
T Consensus 110 LYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~i 189 (830)
T KOG4152|consen 110 LYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDI 189 (830)
T ss_pred HHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEec
Confidence 76655555567776432 224569999999999999999997543221 34889998887743 3876
Q ss_pred C---CCCCCCCcccEEEEE------CCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEe-----cCCCCCCccee
Q 016877 205 L---PPLPVPRYAPATQLW------RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE-----IPIPRGGPHRA 270 (381)
Q Consensus 205 ~---~~~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-----~~~p~~~~~~~ 270 (381)
. ..+|.+|-.|+++++ ..++||+||.++-+ ..+.|.++ .++..|.+. +||||+. |+
T Consensus 190 p~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R---LgDLW~Ld-----l~Tl~W~kp~~~G~~PlPRSL--Hs 259 (830)
T KOG4152|consen 190 PITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR---LGDLWTLD-----LDTLTWNKPSLSGVAPLPRSL--HS 259 (830)
T ss_pred ccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc---ccceeEEe-----cceeecccccccCCCCCCccc--cc
Confidence 5 368999999999987 34799999998743 34567663 778899874 5667665 48
Q ss_pred EEEeCCEEEEEccCCCCCCCCCCCCccccccCce-eecCceeEeC-CCCCeEEcC-----CCCCCCCCcceEEEEECCEE
Q 016877 271 CVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNE-VVYDDVYMLD-DEMKWKVLP-----SMPKPDSHIEFAWVLVNNSI 343 (381)
Q Consensus 271 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~yd-~~~~W~~i~-----~~~~~~~~~~~~~~~~~~~l 343 (381)
+..+++++|||||.-..-..+- ....+..+ ...+.+-++| +++.|+.+- .-..||.+++|+++.++.+|
T Consensus 260 a~~IGnKMyvfGGWVPl~~~~~----~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRl 335 (830)
T KOG4152|consen 260 ATTIGNKMYVFGGWVPLVMDDV----KVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRL 335 (830)
T ss_pred ceeecceeEEecceeeeecccc----ccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEE
Confidence 9999999999999743221110 00011111 1233455566 899998763 11356778888999999999
Q ss_pred EEEcccccccCCceeeeeecceEEEEcCC
Q 016877 344 VIVGGTTEKHPTTKKMVLVGEIFQFNLNT 372 (381)
Q Consensus 344 ~v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 372 (381)
|+..|+++.......++.+.|+|-+|.++
T Consensus 336 YiWSGRDGYrKAwnnQVCCkDlWyLdTek 364 (830)
T KOG4152|consen 336 YIWSGRDGYRKAWNNQVCCKDLWYLDTEK 364 (830)
T ss_pred EEEeccchhhHhhccccchhhhhhhcccC
Confidence 99999998877777788899999999765
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.95 E-value=2.1e-26 Score=203.63 Aligned_cols=254 Identities=20% Similarity=0.276 Sum_probs=188.0
Q ss_pred eeecCCCCCCCceeE---------Eeee-cccccccccCcceEeecCCCCCeEEcc--CCCCCCCCceEEEEC-CEEEEE
Q 016877 61 IILPNNGPQKGENIG---------VKTK-KDVVPKRILPATFQDLPAPELKWEKMK--AAPVPRLDGAAIQIK-NLLYVF 127 (381)
Q Consensus 61 ~~~p~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~--~~p~~r~~~~~~~~~-~~iyv~ 127 (381)
..+|+++||....+. .+++ .+......+-+.++.||...++|+++. +.|.||+.|+++++. +.+|+|
T Consensus 59 ~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~f 138 (521)
T KOG1230|consen 59 TSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLF 138 (521)
T ss_pred ccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEe
Confidence 455667778765544 4455 455445566678999999999999874 478999999998885 899999
Q ss_pred ecCC-CCC----CcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCC-CCCCCcceEEEEECCCCc
Q 016877 128 AGYG-SID----YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGP-QCRGPTAHTFVLDTETKK 201 (381)
Q Consensus 128 GG~~-~~~----~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~~yd~~~~~ 201 (381)
||.- ..+ ...+++|.||+.+++|+++..-..|.+|.+|.+++..++|+||||+... ....+.|++|+||+++-+
T Consensus 139 GGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk 218 (521)
T KOG1230|consen 139 GGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK 218 (521)
T ss_pred ccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecccee
Confidence 9962 111 2347899999999999999877778889999999999999999998554 333568999999999999
Q ss_pred EEeCCC---CCCCCcccEEEEE-CCEEEEEccCCCCC-------CCCCccceEeeeecCCccCCceEEecC---CCCCCc
Q 016877 202 WQDLPP---LPVPRYAPATQLW-RGRLHVMGGSGENR-------YTPEVDHWSLAVKDGKPLEKEWRTEIP---IPRGGP 267 (381)
Q Consensus 202 W~~~~~---~p~~r~~~~~~~~-~~~lyv~GG~~~~~-------~~~~~~~~~~~~~~~~~~~~~W~~~~~---~p~~~~ 267 (381)
|+++.+ -|.||++|++.+. ++.|||.||++... -....+.|.+.....+...-+|+.+.| -|.+|.
T Consensus 219 W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs 298 (521)
T KOG1230|consen 219 WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS 298 (521)
T ss_pred eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC
Confidence 999975 4789999999998 99999999986422 122345666543322222356787754 256666
Q ss_pred ceeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEc
Q 016877 268 HRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVL 322 (381)
Q Consensus 268 ~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i 322 (381)
+.++++. +++-|.|||...-.. ....-...+.||+|.|| +.++|...
T Consensus 299 gfsv~va~n~kal~FGGV~D~ee--------eeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 299 GFSVAVAKNHKALFFGGVCDLEE--------EEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred ceeEEEecCCceEEecceecccc--------cchhhhhhhhhhhhheecccchhhHh
Confidence 6677765 669999999865211 00112334789999999 89999654
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=2e-25 Score=202.09 Aligned_cols=274 Identities=17% Similarity=0.235 Sum_probs=200.7
Q ss_pred HhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecC-----CCCCCCceeEEeee-ccccccc----ccCcceEee
Q 016877 26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPN-----NGPQKGENIGVKTK-KDVVPKR----ILPATFQDL 95 (381)
Q Consensus 26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~-----~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~ 95 (381)
-|-++++...|.+|||.|- ++..+++.||-.+++.-+|. +.+-.+||+.+.+. ++..++. .+++.++.+
T Consensus 35 GHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYEL 113 (830)
T KOG4152|consen 35 GHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYEL 113 (830)
T ss_pred cchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHh
Confidence 3888999999999999542 36789999999999944444 33334788876666 6666653 456667777
Q ss_pred cCCCCCeEEccC-------CCCCCCCceEEEECCEEEEEecCCCC--------CCcccceEEEeCCCC----eEecCCC-
Q 016877 96 PAPELKWEKMKA-------APVPRLDGAAIQIKNLLYVFAGYGSI--------DYVHSHVDIYNFTDN----TWGGRFD- 155 (381)
Q Consensus 96 ~~~~~~W~~l~~-------~p~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~yd~~~~----~W~~~~~- 155 (381)
....-.|+++.+ +|.||.+|+..+.+++.|+|||..++ ..+++|++++++.-. .|...-.
T Consensus 114 QasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~ 193 (830)
T KOG4152|consen 114 QASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITY 193 (830)
T ss_pred hhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEeccccc
Confidence 666678888743 67999999999999999999997431 246789999998854 3887422
Q ss_pred CCCCCccceEEEEEe------CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC---CCCCCCcccEEEEECCEEEE
Q 016877 156 MPREMAHSHLGMVTD------GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHV 226 (381)
Q Consensus 156 ~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv 226 (381)
-+.|.+|..|+++.+ ..++||+||..+- .+.|+|.+|++|.+|.+.. -.|.||..|++..+++|+||
T Consensus 194 Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~----RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyv 269 (830)
T KOG4152|consen 194 GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC----RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYV 269 (830)
T ss_pred CCCCCCcccceeEEEEeccCCcceEEEEcccccc----cccceeEEecceeecccccccCCCCCCcccccceeecceeEE
Confidence 123445788888877 3479999999884 4799999999999999875 46788999999999999999
Q ss_pred EccCCC-----CCCCCCccceEe--eeecCCccCCceEEe-------cCCCCCCcceeEEEeCCEEEEEccCCCCCCCCC
Q 016877 227 MGGSGE-----NRYTPEVDHWSL--AVKDGKPLEKEWRTE-------IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKP 292 (381)
Q Consensus 227 ~GG~~~-----~~~~~~~~~~~~--~~~~~~~~~~~W~~~-------~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~ 292 (381)
|||+-- .........|.. .+.+++..++.|+.+ ...||+|.+|.++.++.+||+..|.++..
T Consensus 270 fGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYr---- 345 (830)
T KOG4152|consen 270 FGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYR---- 345 (830)
T ss_pred ecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhh----
Confidence 999732 111222223321 233445668999875 23799999999999999999999987541
Q ss_pred CCCccccccCceeecCceeEeC
Q 016877 293 GSPIFKCSRRNEVVYDDVYMLD 314 (381)
Q Consensus 293 ~~~~~~~~~~~~~~~~~v~~yd 314 (381)
+.++. +..+.|+|.+|
T Consensus 346 -----KAwnn-QVCCkDlWyLd 361 (830)
T KOG4152|consen 346 -----KAWNN-QVCCKDLWYLD 361 (830)
T ss_pred -----Hhhcc-ccchhhhhhhc
Confidence 22333 33466677775
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.84 E-value=2.5e-19 Score=157.02 Aligned_cols=252 Identities=22% Similarity=0.311 Sum_probs=183.8
Q ss_pred EccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCC--CeEecCCCCCCCCccceEEEEEeCCEEEEEcCCC
Q 016877 104 KMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTD--NTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQY 181 (381)
Q Consensus 104 ~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 181 (381)
.+|++|.+-...+.+.+++.+||-=|..+. +.+..|++. ..|++++..|.+ +|.....++.+++||+|||..
T Consensus 29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a~FpG~-~rnqa~~a~~~~kLyvFgG~G 102 (381)
T COG3055 29 QLPDLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIADFPGG-ARNQAVAAVIGGKLYVFGGYG 102 (381)
T ss_pred cCCCCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcccCCCc-ccccchheeeCCeEEEeeccc
Confidence 468899998888888899999997775432 355666664 579999999986 588889999999999999975
Q ss_pred CCCC--CCCcceEEEEECCCCcEEeCCC-CCCCCcccEEEEECC-EEEEEccCCCCC-----------------------
Q 016877 182 GPQC--RGPTAHTFVLDTETKKWQDLPP-LPVPRYAPATQLWRG-RLHVMGGSGENR----------------------- 234 (381)
Q Consensus 182 ~~~~--~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~-~lyv~GG~~~~~----------------------- 234 (381)
.... ....+++|+|||.+++|+++.. .|....+++.+.+++ +||++||.+...
T Consensus 103 k~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~ 182 (381)
T COG3055 103 KSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIA 182 (381)
T ss_pred cCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHH
Confidence 4332 3448999999999999999974 567788888888888 999999986421
Q ss_pred ----CCCCccceEeeeecCCccCCceEEecCCCC-CCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCc
Q 016877 235 ----YTPEVDHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD 309 (381)
Q Consensus 235 ----~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
..+....|.-++..|+|++++|+.+...|- .+++++++.-++++.++.|+-... .+ +.+
T Consensus 183 ~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpG-----------LR-----t~~ 246 (381)
T COG3055 183 HYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPG-----------LR-----TAE 246 (381)
T ss_pred HHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCC-----------cc-----ccc
Confidence 122344567778899999999999875553 333445556678899999985432 11 223
Q ss_pred eeEeC---CCCCeEEcCCCCCCCCC-----cceEEEEECCEEEEEcccccc-------------cC-CceeeeeecceEE
Q 016877 310 VYMLD---DEMKWKVLPSMPKPDSH-----IEFAWVLVNNSIVIVGGTTEK-------------HP-TTKKMVLVGEIFQ 367 (381)
Q Consensus 310 v~~yd---~~~~W~~i~~~~~~~~~-----~~~~~~~~~~~l~v~GG~~~~-------------~~-~~~~~~~~~~v~~ 367 (381)
++.++ ...+|..++.+|.+... +++-.-..++.++|.||.+-. |+ ..+ .+.++||+
T Consensus 247 ~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K--~w~~~Vy~ 324 (381)
T COG3055 247 VKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSK--SWNSEVYI 324 (381)
T ss_pred eeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhh--hhhceEEE
Confidence 44444 56799999888765532 222234567999999996521 11 112 26778999
Q ss_pred EEcCCCceEEeecC
Q 016877 368 FNLNTLVAVLNAML 381 (381)
Q Consensus 368 yd~~~~~W~~i~~l 381 (381)
+| ++.|+.+++|
T Consensus 325 ~d--~g~Wk~~GeL 336 (381)
T COG3055 325 FD--NGSWKIVGEL 336 (381)
T ss_pred Ec--CCceeeeccc
Confidence 98 8999999876
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.84 E-value=6.5e-19 Score=154.40 Aligned_cols=262 Identities=19% Similarity=0.245 Sum_probs=176.2
Q ss_pred cCCCCCeEEccCCC-CCCCCceEEEECCEEEEEecCCCC----CCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe
Q 016877 96 PAPELKWEKMKAAP-VPRLDGAAIQIKNLLYVFAGYGSI----DYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD 170 (381)
Q Consensus 96 ~~~~~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~ 170 (381)
+-....|++++..| .+|.+..++.++++||||||.... .+..+++++||+.+|+|+++.... |+....++++.+
T Consensus 66 ~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~G~~~~~~ 144 (381)
T COG3055 66 KKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLVGASTFSL 144 (381)
T ss_pred hcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccccccceeEec
Confidence 34556999999988 678888899999999999997532 346689999999999999997654 223556667777
Q ss_pred CC-EEEEEcCCCCCC-------------------------------CCCCcceEEEEECCCCcEEeCCCCC-CCCcccEE
Q 016877 171 GR-YIYVVTGQYGPQ-------------------------------CRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPAT 217 (381)
Q Consensus 171 ~~-~iyv~GG~~~~~-------------------------------~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~ 217 (381)
++ +||++||..... .......+..|||.+++|+.+...| .++++++.
T Consensus 145 ~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~ 224 (381)
T COG3055 145 NGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAV 224 (381)
T ss_pred CCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcce
Confidence 66 999999974110 0123567889999999999999777 57787676
Q ss_pred EEECCEEEEEccCCCCC-CCCCccceEeeeecCCccCCceEEecCCCCCCc-------ceeEEEeCCEEEEEccCCCCCC
Q 016877 218 QLWRGRLHVMGGSGENR-YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP-------HRACVVVDDRLLVIGGQEGDFM 289 (381)
Q Consensus 218 ~~~~~~lyv~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~-------~~~~~~~~~~l~v~GG~~~~~~ 289 (381)
+.-++++.++-|.-... ..+.+....+ .....+|..++.+|..-. ++-.-..++.+.+.||......
T Consensus 225 ~~~~n~~~lInGEiKpGLRt~~~k~~~~-----~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga 299 (381)
T COG3055 225 VIKGNKLTLINGEIKPGLRTAEVKQADF-----GGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGA 299 (381)
T ss_pred eecCCeEEEEcceecCCccccceeEEEe-----ccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhH
Confidence 66788888887753221 2223333332 345679999866543221 1122245788999998654321
Q ss_pred CCCCCCccccc--cCceeecCceeEeCCCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEE
Q 016877 290 AKPGSPIFKCS--RRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQ 367 (381)
Q Consensus 290 ~~~~~~~~~~~--~~~~~~~~~v~~yd~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~ 367 (381)
.+..-...... .-.....++||.+| .+.|+.+..||.++.+ + ..+..+++||++||.+..+. ...+++.
T Consensus 300 ~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-~g~Wk~~GeLp~~l~Y-G-~s~~~nn~vl~IGGE~~~Gk------a~~~v~~ 370 (381)
T COG3055 300 LKAYKNGKFYAHEGLSKSWNSEVYIFD-NGSWKIVGELPQGLAY-G-VSLSYNNKVLLIGGETSGGK------ATTRVYS 370 (381)
T ss_pred HHHHHhcccccccchhhhhhceEEEEc-CCceeeecccCCCccc-e-EEEecCCcEEEEccccCCCe------eeeeEEE
Confidence 11000000000 01223567899995 9999999999997765 3 35888999999999987664 3344555
Q ss_pred EEcCC
Q 016877 368 FNLNT 372 (381)
Q Consensus 368 yd~~~ 372 (381)
+-.+.
T Consensus 371 l~~~g 375 (381)
T COG3055 371 LSWDG 375 (381)
T ss_pred EEEcC
Confidence 44433
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.40 E-value=1.3e-13 Score=125.81 Aligned_cols=258 Identities=14% Similarity=0.172 Sum_probs=166.2
Q ss_pred CCeEEccC----------CCCCCCCceEEEECC--EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC-CCCccceEE
Q 016877 100 LKWEKMKA----------APVPRLDGAAIQIKN--LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP-REMAHSHLG 166 (381)
Q Consensus 100 ~~W~~l~~----------~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~r~~~~ 166 (381)
.+|.++++ -|..|.+|.++...+ -||+.||+++.+.+ .+.|+|+...+.|..+.--. .|-.|..|.
T Consensus 239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l-~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR 317 (723)
T KOG2437|consen 239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDL-ADFWAYSVKENQWTCINRDTEGPGARSCHR 317 (723)
T ss_pred ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhH-HHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence 47887753 367799999988765 89999999988875 67999999999999875432 344788888
Q ss_pred EEEeCC--EEEEEcCCCCCCC---CCCcceEEEEECCCCcEEeCC------CCCCCCcccEEEEECCE--EEEEccCCCC
Q 016877 167 MVTDGR--YIYVVTGQYGPQC---RGPTAHTFVLDTETKKWQDLP------PLPVPRYAPATQLWRGR--LHVMGGSGEN 233 (381)
Q Consensus 167 ~~~~~~--~iyv~GG~~~~~~---~~~~~~~~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~--lyv~GG~~~~ 233 (381)
++..-. ++|+.|-+-+.+. ....+++|+||..++.|..+. .-|...+.|.+++.+++ |||+||+.-+
T Consensus 318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~ 397 (723)
T KOG2437|consen 318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILT 397 (723)
T ss_pred hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeecc
Confidence 888655 9999997754322 223689999999999999885 24667889999999888 9999998643
Q ss_pred CCCCCccceEeeeecCCccCCceEEecCC----------CCCCccee--EEEeCCEEEEEccCCCCCCCCCCCCcccccc
Q 016877 234 RYTPEVDHWSLAVKDGKPLEKEWRTEIPI----------PRGGPHRA--CVVVDDRLLVIGGQEGDFMAKPGSPIFKCSR 301 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----------p~~~~~~~--~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~ 301 (381)
. ...+|. -+|.|+.....|.....- -..|.++. .+.-+..+|++||......
T Consensus 398 ~---~e~~f~-GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E------------ 461 (723)
T KOG2437|consen 398 C---NEPQFS-GLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE------------ 461 (723)
T ss_pred C---CCcccc-ceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE------------
Confidence 2 223332 356667888888764221 11232332 3445778999999865432
Q ss_pred CceeecCceeEeC-CCCCeEEc-------CCC-CCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCC
Q 016877 302 RNEVVYDDVYMLD-DEMKWKVL-------PSM-PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT 372 (381)
Q Consensus 302 ~~~~~~~~v~~yd-~~~~W~~i-------~~~-~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 372 (381)
.+-.+.|+ ....=..+ ..+ |.+.....+.+-.-.+.|.+.-|...... .+.+...++.|+|+..+
T Consensus 462 -----l~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~-~~e~~~rns~wi~~i~~ 535 (723)
T KOG2437|consen 462 -----LNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKE-KREENVRNSFWIYDIVR 535 (723)
T ss_pred -----EeehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhcc-CccccccCcEEEEEecc
Confidence 22233343 11110011 011 11110000111222467777777654321 11122567899999999
Q ss_pred CceEEeec
Q 016877 373 LVAVLNAM 380 (381)
Q Consensus 373 ~~W~~i~~ 380 (381)
+.|.+|.+
T Consensus 536 ~~w~cI~~ 543 (723)
T KOG2437|consen 536 NSWSCIYK 543 (723)
T ss_pred cchhhHhh
Confidence 99988754
No 30
>PF13964 Kelch_6: Kelch motif
Probab=99.35 E-value=2.6e-12 Score=83.59 Aligned_cols=49 Identities=31% Similarity=0.562 Sum_probs=45.1
Q ss_pred CCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCC
Q 016877 111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159 (381)
Q Consensus 111 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~ 159 (381)
||.+|++++++++|||+||........+++++||+++++|+.+++||.|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 6999999999999999999987566678899999999999999999985
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.34 E-value=3e-12 Score=83.32 Aligned_cols=49 Identities=33% Similarity=0.526 Sum_probs=44.5
Q ss_pred cceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCC
Q 016877 162 HSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR 212 (381)
Q Consensus 162 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 212 (381)
|.++++++.+++|||+||.... ...++++++||+++++|+.+++||.||
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 7889999999999999998875 245899999999999999999999987
No 32
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.32 E-value=1.3e-13 Score=125.73 Aligned_cols=170 Identities=15% Similarity=0.136 Sum_probs=122.4
Q ss_pred HHHHhhheeEcC--EEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCC
Q 016877 23 FVMILGFALVAD--FFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPEL 100 (381)
Q Consensus 23 ~~~~~~~~~~~~--~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (381)
.++-|-++.-.+ .||+.||++|...+.+++.| +..++
T Consensus 260 ~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y-----------------------------------------~v~e~ 298 (723)
T KOG2437|consen 260 MRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAY-----------------------------------------SVKEN 298 (723)
T ss_pred ccCcceEEEeCCCcEEEEecCcccchhHHHHHhh-----------------------------------------cCCcc
Confidence 345677777655 99999999997765555555 44566
Q ss_pred CeEEcc---CCCCCCCCceEEEECC--EEEEEecCCCC-----CCcccceEEEeCCCCeEecCCC--C--CCCCccceEE
Q 016877 101 KWEKMK---AAPVPRLDGAAIQIKN--LLYVFAGYGSI-----DYVHSHVDIYNFTDNTWGGRFD--M--PREMAHSHLG 166 (381)
Q Consensus 101 ~W~~l~---~~p~~r~~~~~~~~~~--~iyv~GG~~~~-----~~~~~~~~~yd~~~~~W~~~~~--~--~~~~~r~~~~ 166 (381)
.|+.+. ..|-.|..|.++.... ++|+.|-+-+. ....+++|.||..++.|..+.- - ..|..-+.|.
T Consensus 299 ~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHq 378 (723)
T KOG2437|consen 299 QWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQ 378 (723)
T ss_pred eeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecce
Confidence 776653 4788999999987655 99999987432 2345689999999999998741 1 2344567789
Q ss_pred EEEeCCE--EEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC----------CCCCCcccEEEEE--CCEEEEEccCCC
Q 016877 167 MVTDGRY--IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP----------LPVPRYAPATQLW--RGRLHVMGGSGE 232 (381)
Q Consensus 167 ~~~~~~~--iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~----------~p~~r~~~~~~~~--~~~lyv~GG~~~ 232 (381)
+++.+++ |||+||..-........-+|.||.....|..++. -...|.+|++-.+ ++++|++||...
T Consensus 379 M~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s 458 (723)
T KOG2437|consen 379 MCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS 458 (723)
T ss_pred eeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence 9998888 9999997433221236779999999999987752 1234666666554 678999999764
Q ss_pred C
Q 016877 233 N 233 (381)
Q Consensus 233 ~ 233 (381)
.
T Consensus 459 ~ 459 (723)
T KOG2437|consen 459 K 459 (723)
T ss_pred c
Confidence 3
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.18 E-value=2.6e-11 Score=77.81 Aligned_cols=47 Identities=34% Similarity=0.604 Sum_probs=43.0
Q ss_pred CCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC
Q 016877 111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP 157 (381)
Q Consensus 111 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 157 (381)
||..|++++++++|||+||.+......+++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 68999999999999999999886777889999999999999999876
No 34
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=99.08 E-value=3.9e-10 Score=72.84 Aligned_cols=48 Identities=25% Similarity=0.484 Sum_probs=42.1
Q ss_pred CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEE
Q 016877 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219 (381)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 219 (381)
+++||||||.+... ...++++|+||+.+++|++++++|.+|.+|++++
T Consensus 1 g~~~~vfGG~~~~~-~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG-GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCC-CCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 57899999988422 2458999999999999999999999999999986
No 35
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=99.06 E-value=1.9e-10 Score=73.76 Aligned_cols=47 Identities=40% Similarity=0.700 Sum_probs=41.5
Q ss_pred ccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCC
Q 016877 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP 209 (381)
Q Consensus 161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p 209 (381)
+|..+++++.+++||++||.++.. ..++++++||+++++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN--QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS--SBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccC--ceeeeEEEEeCCCCEEEEcCCCC
Confidence 378899999999999999998832 45899999999999999999886
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.04 E-value=6.6e-10 Score=71.75 Aligned_cols=47 Identities=26% Similarity=0.482 Sum_probs=41.5
Q ss_pred CCCCceEEEECCEEEEEecC--CCCCCcccceEEEeCCCCeEecCCCCC
Q 016877 111 PRLDGAAIQIKNLLYVFAGY--GSIDYVHSHVDIYNFTDNTWGGRFDMP 157 (381)
Q Consensus 111 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~~~~W~~~~~~~ 157 (381)
||..|++++++++|||+||. +......+++++||+++++|+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 445556788999999999999998775
No 37
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=99.03 E-value=2.7e-10 Score=73.72 Aligned_cols=47 Identities=34% Similarity=0.569 Sum_probs=32.1
Q ss_pred CCCCceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC
Q 016877 111 PRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP 157 (381)
Q Consensus 111 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 157 (381)
||..|+++.+ +++|||+||.+.....++++|+||+++++|++++++|
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 6999999998 5899999999887677889999999999999998776
No 38
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=99.01 E-value=1.2e-09 Score=70.47 Aligned_cols=49 Identities=27% Similarity=0.409 Sum_probs=40.8
Q ss_pred ccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCC
Q 016877 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP 209 (381)
Q Consensus 161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p 209 (381)
+|..|++++.+++||++||..........++++.||+++++|++++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 3788999999999999999922222345899999999999999998875
No 39
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.89 E-value=4.9e-09 Score=67.64 Aligned_cols=47 Identities=30% Similarity=0.448 Sum_probs=40.4
Q ss_pred CCEEEEEecCC-CCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877 121 KNLLYVFAGYG-SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169 (381)
Q Consensus 121 ~~~iyv~GG~~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 169 (381)
+++|||+||.+ .....++++|+||+.+++|++++++|. +|..|++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~--~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP--PRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC--CccceEEEE
Confidence 57899999998 456677899999999999999988877 588888875
No 40
>smart00612 Kelch Kelch domain.
Probab=98.89 E-value=3.5e-09 Score=67.74 Aligned_cols=47 Identities=38% Similarity=0.604 Sum_probs=41.2
Q ss_pred EEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECC
Q 016877 173 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 222 (381)
Q Consensus 173 ~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 222 (381)
+||++||..+. ...+++++||+++++|+.+++||.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG---QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC---ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998652 347899999999999999999999999999988764
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.87 E-value=2.4e-09 Score=69.15 Aligned_cols=47 Identities=28% Similarity=0.530 Sum_probs=30.3
Q ss_pred cceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCC
Q 016877 162 HSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV 210 (381)
Q Consensus 162 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 210 (381)
|..|+++.. +++||||||.+... ..++++|+||+++++|++++++|.
T Consensus 2 R~~h~~~~~~~~~i~v~GG~~~~~--~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 2 RYGHSAVSIGDNSIYVFGGRDSSG--SPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp -BS-EEEEE-TTEEEEE--EEE-T--EE---EEEEETTTTEEEE--SS--
T ss_pred cceEEEEEEeCCeEEEECCCCCCC--cccCCEEEEECCCCEEEECCCCCC
Confidence 677888877 58999999998764 348999999999999999988873
No 42
>smart00612 Kelch Kelch domain.
Probab=98.66 E-value=4.9e-08 Score=62.26 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=38.3
Q ss_pred EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCC
Q 016877 123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGR 172 (381)
Q Consensus 123 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~ 172 (381)
+|||+||.... ...+++++||+.+++|+.+++|+.+ |..++++++++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTP--RSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCc--cccceEEEeCC
Confidence 48999998753 4467899999999999999999884 77777777654
No 43
>PF13854 Kelch_5: Kelch motif
Probab=98.65 E-value=6.9e-08 Score=59.86 Aligned_cols=41 Identities=22% Similarity=0.508 Sum_probs=36.1
Q ss_pred CCCCCCCceEEEECCEEEEEecCCC-CCCcccceEEEeCCCC
Q 016877 108 APVPRLDGAAIQIKNLLYVFAGYGS-IDYVHSHVDIYNFTDN 148 (381)
Q Consensus 108 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~~~ 148 (381)
+|.+|..|+++.++++|||+||.+. .+...+++|+||+.+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 5889999999999999999999984 6667789999998763
No 44
>PLN02772 guanylate kinase
Probab=98.53 E-value=7.7e-07 Score=82.01 Aligned_cols=87 Identities=17% Similarity=0.238 Sum_probs=67.2
Q ss_pred CCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCC-CCCCccceEEEEEe-CCEEEEEcCCCCCCCC
Q 016877 109 PVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTD-GRYIYVVTGQYGPQCR 186 (381)
Q Consensus 109 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 186 (381)
..|+..++++.+++++||+||.+......+.+++||..+++|..-.-+ ..|.+|.+|+++++ +++|+|+++....
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 358889999999999999999887665678899999999999985433 12335788888776 6899999864442
Q ss_pred CCcceEEEEECCCC
Q 016877 187 GPTAHTFVLDTETK 200 (381)
Q Consensus 187 ~~~~~~~~yd~~~~ 200 (381)
-+++|.....|.
T Consensus 99 --~~~~w~l~~~t~ 110 (398)
T PLN02772 99 --DDSIWFLEVDTP 110 (398)
T ss_pred --ccceEEEEcCCH
Confidence 366787777653
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.50 E-value=3.8e-06 Score=72.99 Aligned_cols=152 Identities=16% Similarity=0.240 Sum_probs=95.7
Q ss_pred eEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCC----CcEEeCC-CCCCCCcc
Q 016877 140 VDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET----KKWQDLP-PLPVPRYA 214 (381)
Q Consensus 140 ~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~----~~W~~~~-~~p~~r~~ 214 (381)
...||+.+++++.+...... ....+ +..-++.+.+.||.... .+.+-.|++.+ ..|.+.+ .|..+|..
T Consensus 48 s~~yD~~tn~~rpl~v~td~-FCSgg-~~L~dG~ll~tGG~~~G-----~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY 120 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDT-FCSGG-AFLPDGRLLQTGGDNDG-----NKAIRIFTPCTSDGTCDWTESPNDMQSGRWY 120 (243)
T ss_pred EEEEecCCCcEEeccCCCCC-cccCc-CCCCCCCEEEeCCCCcc-----ccceEEEecCCCCCCCCceECcccccCCCcc
Confidence 56799999999988644332 12222 34467899999997542 34566788765 6798886 58999999
Q ss_pred cEEEEE-CCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEec----CCCCCCcceeEEEeCCEEEEEccCCCCCC
Q 016877 215 PATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI----PIPRGGPHRACVVVDDRLLVIGGQEGDFM 289 (381)
Q Consensus 215 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~----~~p~~~~~~~~~~~~~~l~v~GG~~~~~~ 289 (381)
.++..+ +++++|+||.....+ +.|... .-......|..+. ..+...+-+..+.-+++||+++....
T Consensus 121 pT~~~L~DG~vlIvGG~~~~t~----E~~P~~--~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--- 191 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNNPTY----EFWPPK--GPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--- 191 (243)
T ss_pred ccceECCCCCEEEEeCcCCCcc----cccCCc--cCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc---
Confidence 988875 789999999874322 111100 0001111222222 23445544566677999999997642
Q ss_pred CCCCCCccccccCceeecCceeEeCCCCCe-EEcCCCCC
Q 016877 290 AKPGSPIFKCSRRNEVVYDDVYMLDDEMKW-KVLPSMPK 327 (381)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W-~~i~~~~~ 327 (381)
.+++| .++++ +.+|.+|.
T Consensus 192 -------------------~i~d~-~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 192 -------------------IIYDY-KTNTVVRTLPDLPG 210 (243)
T ss_pred -------------------EEEeC-CCCeEEeeCCCCCC
Confidence 25555 56665 77887764
No 46
>PLN02772 guanylate kinase
Probab=98.50 E-value=9.1e-07 Score=81.54 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=63.6
Q ss_pred ccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC---CCCCCCcccEEEEE-CCEEEEEccCCCCCCC
Q 016877 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLW-RGRLHVMGGSGENRYT 236 (381)
Q Consensus 161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 236 (381)
++..++++.+++++||+||.+..+. .++.+++||+.+++|.... +.|.||.+|+++++ +++|+|+++....
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~~--~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGNT--LSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCcc--ccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 3677899999999999999766432 3799999999999998865 68899999999988 6889999875532
Q ss_pred CCccceEee
Q 016877 237 PEVDHWSLA 245 (381)
Q Consensus 237 ~~~~~~~~~ 245 (381)
....|-+.
T Consensus 99 -~~~~w~l~ 106 (398)
T PLN02772 99 -DDSIWFLE 106 (398)
T ss_pred -ccceEEEE
Confidence 34556554
No 47
>PF13854 Kelch_5: Kelch motif
Probab=98.42 E-value=7.1e-07 Score=55.25 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=32.6
Q ss_pred CccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877 160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET 199 (381)
Q Consensus 160 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~ 199 (381)
.+|..|++++++++|||+||... .....++++|+||+.+
T Consensus 3 ~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 3 SPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence 36899999999999999999985 2224589999999876
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.39 E-value=0.00013 Score=63.83 Aligned_cols=181 Identities=14% Similarity=0.214 Sum_probs=107.1
Q ss_pred cceEeecCCCCCeEEccCCCCCCCCc----eEEEEC----C-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCC
Q 016877 90 ATFQDLPAPELKWEKMKAAPVPRLDG----AAIQIK----N-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160 (381)
Q Consensus 90 ~~~~~~~~~~~~W~~l~~~p~~r~~~----~~~~~~----~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~ 160 (381)
..+...||.+.+|..+++.+.++... .....+ . ||..+....... ....+++|+..+++|+.+...+...
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~~ 92 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPHH 92 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCCc
Confidence 46889999999999998655432111 111122 2 566665432111 2346899999999999987443321
Q ss_pred ccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEe-CCCCCCCC----cccEEEEECCEEEEEccCCCCCC
Q 016877 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQD-LPPLPVPR----YAPATQLWRGRLHVMGGSGENRY 235 (381)
Q Consensus 161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r----~~~~~~~~~~~lyv~GG~~~~~~ 235 (381)
.... ..+.+++.+|-+.-..... ....+..||..+.+|+. ++ +|..+ ....++.++++|.++.....
T Consensus 93 ~~~~-~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~--- 164 (230)
T TIGR01640 93 PLKS-RGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKD--- 164 (230)
T ss_pred cccC-CeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCC---
Confidence 1122 2667899899876322211 11369999999999995 54 44332 23456678899888865432
Q ss_pred CCCccceEeeeecCCccCCceEEecCCC-----CCC--cceeEEEeCCEEEEEcc
Q 016877 236 TPEVDHWSLAVKDGKPLEKEWRTEIPIP-----RGG--PHRACVVVDDRLLVIGG 283 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~W~~~~~~p-----~~~--~~~~~~~~~~~l~v~GG 283 (381)
....+.|.++ + ....+|++.-.++ .-. .....+..+++|++.-.
T Consensus 165 ~~~~~IWvl~--d--~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~ 215 (230)
T TIGR01640 165 TNNFDLWVLN--D--AGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE 215 (230)
T ss_pred CCcEEEEEEC--C--CCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence 1236778764 2 3345698752222 111 12345566788888664
No 49
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.32 E-value=0.0002 Score=62.66 Aligned_cols=198 Identities=13% Similarity=0.148 Sum_probs=112.7
Q ss_pred cceEEEeCCCCeEecCCCCCCCCc---cceEEEEEe---CC-EEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCC
Q 016877 138 SHVDIYNFTDNTWGGRFDMPREMA---HSHLGMVTD---GR-YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV 210 (381)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~~~~~~---r~~~~~~~~---~~-~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 210 (381)
..+.++||.|.+|..+|+.+.+.. +...+.... +. |+..+....... ....+++|+..++.|+.+...+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~---~~~~~~Vys~~~~~Wr~~~~~~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR---NQSEHQVYTLGSNSWRTIECSPP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC---CCccEEEEEeCCCCccccccCCC
Confidence 358899999999999976543211 111111111 11 455443321111 23578999999999999874332
Q ss_pred C-CcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCC----cceeEEEeCCEEEEEccCC
Q 016877 211 P-RYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG----PHRACVVVDDRLLVIGGQE 285 (381)
Q Consensus 211 ~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~----~~~~~~~~~~~l~v~GG~~ 285 (381)
. ......+.++|.||-+.-.... ... ..+..||..+.+|++..++|... .....+.++++|.++....
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~-----~~~--~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~ 163 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKT-----NPD--YFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKK 163 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCC-----CCc--EEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecC
Confidence 1 1122266789999988743221 111 13556678899999533334322 1345678899998876543
Q ss_pred CCCCCCCCCCccccccCceeecCceeEeC--CCCCeEEcCCCCC---CCCC--cceEEEEECCEEEEEcccccccCCcee
Q 016877 286 GDFMAKPGSPIFKCSRRNEVVYDDVYMLD--DEMKWKVLPSMPK---PDSH--IEFAWVLVNNSIVIVGGTTEKHPTTKK 358 (381)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd--~~~~W~~i~~~~~---~~~~--~~~~~~~~~~~l~v~GG~~~~~~~~~~ 358 (381)
... .-+||..+ ....|++.-.++. +... .....+..+++|++..... ..
T Consensus 164 ~~~------------------~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~~----- 219 (230)
T TIGR01640 164 DTN------------------NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-NP----- 219 (230)
T ss_pred CCC------------------cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-Cc-----
Confidence 210 23688875 4567987543331 1111 1123366778888877531 11
Q ss_pred eeeecceEEEEcCCC
Q 016877 359 MVLVGEIFQFNLNTL 373 (381)
Q Consensus 359 ~~~~~~v~~yd~~~~ 373 (381)
.-+..||+++|
T Consensus 220 ----~~~~~y~~~~~ 230 (230)
T TIGR01640 220 ----FYIFYYNVGEN 230 (230)
T ss_pred ----eEEEEEeccCC
Confidence 13899999875
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.25 E-value=3.9e-05 Score=66.71 Aligned_cols=151 Identities=17% Similarity=0.262 Sum_probs=92.4
Q ss_pred ceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEec-CCCCCCcc
Q 016877 190 AHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI-PIPRGGPH 268 (381)
Q Consensus 190 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~p~~~~~ 268 (381)
...-.||+.+++++.+......-+...+..-++++++.||..+. ...+..|+. +.+..+..|.+.. .|...|.+
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p---~~~~~~~~w~e~~~~m~~~RWY 120 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTP---CTSDGTCDWTESPNDMQSGRWY 120 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEec---CCCCCCCCceECcccccCCCcc
Confidence 34568999999999887544444444445568999999998652 222333331 0012246798875 58888888
Q ss_pred eeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEe-CC------CCCeEEcCCC--CCCCCCcceEEEE
Q 016877 269 RACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML-DD------EMKWKVLPSM--PKPDSHIEFAWVL 338 (381)
Q Consensus 269 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y-d~------~~~W~~i~~~--~~~~~~~~~~~~~ 338 (381)
.+...+ +++++|+||..... |.| ++ ...|..+... ..+....-...+.
T Consensus 121 pT~~~L~DG~vlIvGG~~~~t----------------------~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~ll 178 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNNPT----------------------YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLL 178 (243)
T ss_pred ccceECCCCCEEEEeCcCCCc----------------------ccccCCccCCCCceeeecchhhhccCccccCceEEEc
Confidence 887765 88999999987331 111 11 1122222211 1122222234478
Q ss_pred ECCEEEEEcccccccCCceeeeeecceEEEEcCCCce-EEeecC
Q 016877 339 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVA-VLNAML 381 (381)
Q Consensus 339 ~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W-~~i~~l 381 (381)
.+++|++++... ..+||+.++++ +.++.|
T Consensus 179 PdG~lFi~an~~--------------s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 179 PDGNLFIFANRG--------------SIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred CCCCEEEEEcCC--------------cEEEeCCCCeEEeeCCCC
Confidence 899999998753 57889998876 555543
No 51
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.03 E-value=0.00097 Score=57.95 Aligned_cols=160 Identities=14% Similarity=0.115 Sum_probs=94.8
Q ss_pred EEEEecCCCCCCcccceEEEeCCCCe--------Eec---CCCCCCCCccceEEEEEe--C--CEEEEEcCCCCCC--C-
Q 016877 124 LYVFAGYGSIDYVHSHVDIYNFTDNT--------WGG---RFDMPREMAHSHLGMVTD--G--RYIYVVTGQYGPQ--C- 185 (381)
Q Consensus 124 iyv~GG~~~~~~~~~~~~~yd~~~~~--------W~~---~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~--~- 185 (381)
-++.||..+++.+.+++++....+.. ..+ +.++|. +|++|++.++ . ....+|||..-.- .
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~--aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR 118 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPE--ARYGHTINVVHSRGKTACVLFGGRSYMPPGQR 118 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCc--ccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence 45678888888888888888766443 111 345555 6898887665 2 2477899974210 0
Q ss_pred --------CCCcceEEEEECCCCcEEe--CCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCc
Q 016877 186 --------RGPTAHTFVLDTETKKWQD--LPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 255 (381)
Q Consensus 186 --------~~~~~~~~~yd~~~~~W~~--~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (381)
......|+..|++-...+. ++.+......|.+..-+|.+|++||+.-.........|.+.+.- +...-
T Consensus 119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdL--llGSP 196 (337)
T PF03089_consen 119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDL--LLGSP 196 (337)
T ss_pred chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEee--cCCCc
Confidence 1124567888888776543 45677788888888999999999998654333334445543221 11111
Q ss_pred eEEecCCCCCCcceeEEE---eCCEEEEEccCCCC
Q 016877 256 WRTEIPIPRGGPHRACVV---VDDRLLVIGGQEGD 287 (381)
Q Consensus 256 W~~~~~~p~~~~~~~~~~---~~~~l~v~GG~~~~ 287 (381)
......++.+..-.++.+ -.++.+|+||+...
T Consensus 197 ~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sd 231 (337)
T PF03089_consen 197 AVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSD 231 (337)
T ss_pred eeEEEECCCCceEeeeeEeecCCCceEEEeccccc
Confidence 111112233322222221 14678889999755
No 52
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.95 E-value=0.012 Score=55.95 Aligned_cols=247 Identities=15% Similarity=0.110 Sum_probs=128.6
Q ss_pred hheeEcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCC--C--------CCCceeEEeee-cccccccccCcceEe
Q 016877 28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNG--P--------QKGENIGVKTK-KDVVPKRILPATFQD 94 (381)
Q Consensus 28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~--~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~ 94 (381)
.-++.++.+|+.... ..+.++|..+++ ....... . +..-+....++ .+... ....++.
T Consensus 64 sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~---~~g~l~a 134 (394)
T PRK11138 64 HPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS---EKGQVYA 134 (394)
T ss_pred ccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc---CCCEEEE
Confidence 457789999998642 368999999888 3322211 0 11111222222 33322 2346888
Q ss_pred ecCCCC--CeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccceEEEEEe
Q 016877 95 LPAPEL--KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTD 170 (381)
Q Consensus 95 ~~~~~~--~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~ 170 (381)
+|..+. .|+.-.+ .+ ...+-++.++.+|+..+. ..++.+|+++.+ |+.-...|....+...+-++.
T Consensus 135 ld~~tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~ 204 (394)
T PRK11138 135 LNAEDGEVAWQTKVA--GE-ALSRPVVSDGLVLVHTSN-------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA 204 (394)
T ss_pred EECCCCCCcccccCC--Cc-eecCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE
Confidence 987665 6865322 11 112224557888875431 358999998775 887543322111222233455
Q ss_pred CCEEEEEcCCCCCCCCCCcceEEEEECCCC--cEEeCCCCCCC--------CcccEEEEECCEEEEEccCCCCCCCCCcc
Q 016877 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETK--KWQDLPPLPVP--------RYAPATQLWRGRLHVMGGSGENRYTPEVD 240 (381)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 240 (381)
++.+|+..+ ...++.+|+++. .|+.-...|.. ....+-++.++.+|+.+. ++ .
T Consensus 205 ~~~v~~~~~---------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g-------~ 267 (394)
T PRK11138 205 FGGAIVGGD---------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NG-------N 267 (394)
T ss_pred CCEEEEEcC---------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-CC-------e
Confidence 677776433 234777888765 47643212211 011233467888888652 11 1
Q ss_pred ceEeeeecCCccC--CceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-C--
Q 016877 241 HWSLAVKDGKPLE--KEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D-- 315 (381)
Q Consensus 241 ~~~~~~~~~~~~~--~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~-- 315 (381)
.+- +|+.+ ..|+.... .. ...+..+++||+.... ..++.+| .
T Consensus 268 l~a-----ld~~tG~~~W~~~~~--~~---~~~~~~~~~vy~~~~~-----------------------g~l~ald~~tG 314 (394)
T PRK11138 268 LVA-----LDLRSGQIVWKREYG--SV---NDFAVDGGRIYLVDQN-----------------------DRVYALDTRGG 314 (394)
T ss_pred EEE-----EECCCCCEEEeecCC--Cc---cCcEEECCEEEEEcCC-----------------------CeEEEEECCCC
Confidence 111 22333 35875321 11 1346678999987532 1378887 4
Q ss_pred CCCeEEcCCCCCCCCCcceEEEEECCEEEEEc
Q 016877 316 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVG 347 (381)
Q Consensus 316 ~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~G 347 (381)
+..|+.-. +. .+. ..+.++.++.||+..
T Consensus 315 ~~~W~~~~-~~-~~~--~~sp~v~~g~l~v~~ 342 (394)
T PRK11138 315 VELWSQSD-LL-HRL--LTAPVLYNGYLVVGD 342 (394)
T ss_pred cEEEcccc-cC-CCc--ccCCEEECCEEEEEe
Confidence 34686421 11 111 123356788888754
No 53
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.67 E-value=0.0052 Score=57.08 Aligned_cols=124 Identities=21% Similarity=0.272 Sum_probs=80.4
Q ss_pred EEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCc--cceEee
Q 016877 168 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEV--DHWSLA 245 (381)
Q Consensus 168 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~--~~~~~~ 245 (381)
++.+++|+.++.. ....+||+++..-...|.++.+.....++.++++||++............ ..| +
T Consensus 73 al~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F--E 141 (342)
T PF07893_consen 73 ALHGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF--E 141 (342)
T ss_pred EecCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeE--E
Confidence 3359999998653 33789999999988888888777777777889999999876432111110 133 3
Q ss_pred eecCC--------ccCCceEEecCCCCCCc-------ceeEEEe-CCEEEE-EccCCCCCCCCCCCCccccccCceeecC
Q 016877 246 VKDGK--------PLEKEWRTEIPIPRGGP-------HRACVVV-DDRLLV-IGGQEGDFMAKPGSPIFKCSRRNEVVYD 308 (381)
Q Consensus 246 ~~~~~--------~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~l~v-~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (381)
+..|+ ...-.|+.+++.|-... -.+.+++ +..|+| .-+...
T Consensus 142 ~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~---------------------- 199 (342)
T PF07893_consen 142 ALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRW---------------------- 199 (342)
T ss_pred EeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCce----------------------
Confidence 33332 23346788766443221 2345666 677888 443321
Q ss_pred ceeEeC-CCCCeEEcCC
Q 016877 309 DVYMLD-DEMKWKVLPS 324 (381)
Q Consensus 309 ~v~~yd-~~~~W~~i~~ 324 (381)
-.|.|| .+.+|+....
T Consensus 200 GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGD 216 (342)
T ss_pred EEEEEEcCCcceeeccc
Confidence 169999 8899999975
No 54
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.60 E-value=0.067 Score=50.48 Aligned_cols=211 Identities=14% Similarity=0.123 Sum_probs=106.2
Q ss_pred hhheeEcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCC--C
Q 016877 27 LGFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPEL--K 101 (381)
Q Consensus 27 ~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~ 101 (381)
.+.++.++.+|+.+. + ..+.+||+.+++ ........ ..-+....++ .+... ....++.+|..+. .
T Consensus 59 ~~p~v~~~~v~v~~~-~-----g~v~a~d~~tG~~~W~~~~~~~-~~~~p~v~~~~v~v~~---~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 59 LQPAVAGGKVYAADA-D-----GTVVALDAETGKRLWRVDLDER-LSGGVGADGGLVFVGT---EKGEVIALDAEDGKEL 128 (377)
T ss_pred cceEEECCEEEEECC-C-----CeEEEEEccCCcEeeeecCCCC-cccceEEcCCEEEEEc---CCCEEEEEECCCCcEe
Confidence 345778898888763 2 368999999888 22222111 1111122222 33222 2346888887655 5
Q ss_pred eEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCC--eEecCCCCCCCCccceEEEEEeCCEEEEEcC
Q 016877 102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREMAHSHLGMVTDGRYIYVVTG 179 (381)
Q Consensus 102 W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG 179 (381)
|+.-.. .. .....+..++.+|+..+ ...++++|+++. .|+.-...+....+...+.+..++.+|+ |.
T Consensus 129 W~~~~~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~ 197 (377)
T TIGR03300 129 WRAKLS--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GF 197 (377)
T ss_pred eeeccC--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-EC
Confidence 865322 11 11223445777777543 134889999866 4876432221001222334556676654 32
Q ss_pred CCCCCCCCCcceEEEEECCCC--cEEeCCCCCCCC--------cccEEEEECCEEEEEccCCCCCCCCCccceEeeeecC
Q 016877 180 QYGPQCRGPTAHTFVLDTETK--KWQDLPPLPVPR--------YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDG 249 (381)
Q Consensus 180 ~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~ 249 (381)
. ...+..+|+++. .|+.--..+... ...+..+.++.+|+.... + ....++.
T Consensus 198 ~--------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-g-----~l~a~d~----- 258 (377)
T TIGR03300 198 A--------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-G-----RVAALDL----- 258 (377)
T ss_pred C--------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-C-----EEEEEEC-----
Confidence 1 235888998765 476432222111 122334567888886421 1 1222221
Q ss_pred CccCCceEEecCCCCCCcceeEEEeCCEEEEEc
Q 016877 250 KPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIG 282 (381)
Q Consensus 250 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~G 282 (381)
...+..|+.... . ....+..+++||+..
T Consensus 259 ~tG~~~W~~~~~---~--~~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 259 RSGRVLWKRDAS---S--YQGPAVDDNRLYVTD 286 (377)
T ss_pred CCCcEEEeeccC---C--ccCceEeCCEEEEEC
Confidence 122345765311 1 123456788998864
No 55
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.43 E-value=0.0049 Score=53.70 Aligned_cols=112 Identities=13% Similarity=0.226 Sum_probs=67.4
Q ss_pred EEEEcCCCCCCCCCCcceEEEEECCCCc--------E---EeCCCCCCCCcccEEEEE--CC--EEEEEccCCCCC-CCC
Q 016877 174 IYVVTGQYGPQCRGPTAHTFVLDTETKK--------W---QDLPPLPVPRYAPATQLW--RG--RLHVMGGSGENR-YTP 237 (381)
Q Consensus 174 iyv~GG~~~~~~~~~~~~~~~yd~~~~~--------W---~~~~~~p~~r~~~~~~~~--~~--~lyv~GG~~~~~-~~~ 237 (381)
-+|.||.+..... ++.+|........ . ..+.+.|.+|++|++-++ .+ ...+|||+.-.. -..
T Consensus 41 YlIHGGrTPNNEl--S~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR 118 (337)
T PF03089_consen 41 YLIHGGRTPNNEL--SSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR 118 (337)
T ss_pred EEecCCcCCCccc--ccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence 4467887665443 5666665554322 1 223579999999999876 33 388889975321 123
Q ss_pred CccceEeeeec------CCccCCceEE--ecCCCCCCcceeEEEeCCEEEEEccCCCC
Q 016877 238 EVDHWSLAVKD------GKPLEKEWRT--EIPIPRGGPHRACVVVDDRLLVIGGQEGD 287 (381)
Q Consensus 238 ~~~~~~~~~~~------~~~~~~~W~~--~~~~p~~~~~~~~~~~~~~l~v~GG~~~~ 287 (381)
.++.|+-.+.+ .|.+-...+. ++.+..+.+.|.+..-++.+|++||..-.
T Consensus 119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~ 176 (337)
T PF03089_consen 119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLE 176 (337)
T ss_pred chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEcc
Confidence 44555543211 1233333322 34455666677778889999999998643
No 56
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.40 E-value=0.13 Score=48.92 Aligned_cols=211 Identities=15% Similarity=0.122 Sum_probs=107.9
Q ss_pred hheeEcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCC--Ce
Q 016877 28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPEL--KW 102 (381)
Q Consensus 28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~W 102 (381)
+.++.++.+|+.+ .+ ..+.++|.++++ ...+...+.... -.+.++ .+... ....++.+|+.+. .|
T Consensus 115 ~~~v~~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~~~~~ss-P~v~~~~v~v~~---~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 115 GVTVAGGKVYIGS-EK-----GQVYALNAEDGEVAWQTKVAGEALSR-PVVSDGLVLVHT---SNGMLQALNESDGAVKW 184 (394)
T ss_pred ccEEECCEEEEEc-CC-----CEEEEEECCCCCCcccccCCCceecC-CEEECCEEEEEC---CCCEEEEEEccCCCEee
Confidence 4567788998754 22 368999999988 332221110000 011112 22221 2346888998776 58
Q ss_pred EEccCCCC--CCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCC------ccceEEEEEeCC
Q 016877 103 EKMKAAPV--PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREM------AHSHLGMVTDGR 172 (381)
Q Consensus 103 ~~l~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~------~r~~~~~~~~~~ 172 (381)
+.-...|. .+...+-++.++.+|+..+. ..+..+|+++.+ |+.-...+... .....+-++.++
T Consensus 185 ~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~ 257 (394)
T PRK11138 185 TVNLDVPSLTLRGESAPATAFGGAIVGGDN-------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG 257 (394)
T ss_pred eecCCCCcccccCCCCCEEECCEEEEEcCC-------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC
Confidence 76433322 12223334556777764431 247788888764 87532222100 011233456789
Q ss_pred EEEEEcCCCCCCCCCCcceEEEEECCCCc--EEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCC
Q 016877 173 YIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK 250 (381)
Q Consensus 173 ~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~ 250 (381)
.+|+.+. ...++.+|+++.+ |+.- .... ...++.+++||+.... ...+-++ ..
T Consensus 258 ~vy~~~~---------~g~l~ald~~tG~~~W~~~--~~~~---~~~~~~~~~vy~~~~~--------g~l~ald---~~ 312 (394)
T PRK11138 258 VVYALAY---------NGNLVALDLRSGQIVWKRE--YGSV---NDFAVDGGRIYLVDQN--------DRVYALD---TR 312 (394)
T ss_pred EEEEEEc---------CCeEEEEECCCCCEEEeec--CCCc---cCcEEECCEEEEEcCC--------CeEEEEE---CC
Confidence 9998652 2358899998754 8753 2111 1345678899987531 1122221 11
Q ss_pred ccCCceEEecCCCCCCcceeEEEeCCEEEEEc
Q 016877 251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIG 282 (381)
Q Consensus 251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~G 282 (381)
..+..|+..... .+...+.+..+++||+..
T Consensus 313 tG~~~W~~~~~~--~~~~~sp~v~~g~l~v~~ 342 (394)
T PRK11138 313 GGVELWSQSDLL--HRLLTAPVLYNGYLVVGD 342 (394)
T ss_pred CCcEEEcccccC--CCcccCCEEECCEEEEEe
Confidence 223457643211 112224456788988753
No 57
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.88 E-value=0.41 Score=45.16 Aligned_cols=169 Identities=13% Similarity=0.137 Sum_probs=86.2
Q ss_pred heeEcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCC--CeE
Q 016877 29 FALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPEL--KWE 103 (381)
Q Consensus 29 ~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~W~ 103 (381)
.++.++.+|+.. .+ +.+.++|+.++. ............. ...++ .+... ....++.+|+.+. .|+
T Consensus 101 p~v~~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~~~~~~~p-~v~~~~v~v~~---~~g~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 101 VGADGGLVFVGT-EK-----GEVIALDAEDGKELWRAKLSSEVLSPP-LVANGLVVVRT---NDGRLTALDAATGERLWT 170 (377)
T ss_pred eEEcCCEEEEEc-CC-----CEEEEEECCCCcEeeeeccCceeecCC-EEECCEEEEEC---CCCeEEEEEcCCCceeeE
Confidence 345577777643 23 368999998887 2222211100000 11111 22221 2346788888765 586
Q ss_pred EccCCCC--CCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCC--eEecCCCCCCCC------ccceEEEEEeCCE
Q 016877 104 KMKAAPV--PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREM------AHSHLGMVTDGRY 173 (381)
Q Consensus 104 ~l~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~------~r~~~~~~~~~~~ 173 (381)
.-...+. .+...+.+..++.+| +|..+ ..+..+|+++. .|+.-...+... .....+.+..++.
T Consensus 171 ~~~~~~~~~~~~~~sp~~~~~~v~-~~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~ 243 (377)
T TIGR03300 171 YSRVTPALTLRGSASPVIADGGVL-VGFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQ 243 (377)
T ss_pred EccCCCceeecCCCCCEEECCEEE-EECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCE
Confidence 5433221 122233455566655 44321 24888998776 486532222100 0112234456888
Q ss_pred EEEEcCCCCCCCCCCcceEEEEECCCCc--EEeCCCCCCCCcccEEEEECCEEEEEc
Q 016877 174 IYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMG 228 (381)
Q Consensus 174 iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~G 228 (381)
+|+... ...++.||+++.+ |+.-. + .....++.++++|+..
T Consensus 244 vy~~~~---------~g~l~a~d~~tG~~~W~~~~--~---~~~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 244 VYAVSY---------QGRVAALDLRSGRVLWKRDA--S---SYQGPAVDDNRLYVTD 286 (377)
T ss_pred EEEEEc---------CCEEEEEECCCCcEEEeecc--C---CccCceEeCCEEEEEC
Confidence 888642 2458899987654 76531 1 1223446788898874
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.64 E-value=0.073 Score=49.49 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=73.4
Q ss_pred ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcc----cceEEE--eC--------CCCeEecCCCC
Q 016877 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVH----SHVDIY--NF--------TDNTWGGRFDM 156 (381)
Q Consensus 91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~----~~~~~y--d~--------~~~~W~~~~~~ 156 (381)
....||+.+..-..++.++.+.....++.++++||++.......... ...|++ ++ ..-.|+.+++.
T Consensus 87 ~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P 166 (342)
T PF07893_consen 87 RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP 166 (342)
T ss_pred CeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence 47799999988777777877777777788899999998764322110 034555 32 22368888775
Q ss_pred CCCCccc-----eEEEEEe-CCEEEEE-cCCCCCCCCCCcceEEEEECCCCcEEeCCC--CCC
Q 016877 157 PREMAHS-----HLGMVTD-GRYIYVV-TGQYGPQCRGPTAHTFVLDTETKKWQDLPP--LPV 210 (381)
Q Consensus 157 ~~~~~r~-----~~~~~~~-~~~iyv~-GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~ 210 (381)
|...... -.+-+++ +..|+|- -|.. .-.+.||.++.+|+++.+ ||.
T Consensus 167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred CccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeeccceecCc
Confidence 5432211 2334445 7889983 2211 248999999999999985 553
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.53 E-value=0.47 Score=41.22 Aligned_cols=209 Identities=21% Similarity=0.283 Sum_probs=113.9
Q ss_pred cceEeecCCCC--CeEEccCCCCCCCCce--EEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccc
Q 016877 90 ATFQDLPAPEL--KWEKMKAAPVPRLDGA--AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHS 163 (381)
Q Consensus 90 ~~~~~~~~~~~--~W~~l~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~ 163 (381)
..+..+|+.+. .|+. .+..+..... .+..++++|+..+ ...+.++|..+.+ |+.-. +.+ .
T Consensus 3 g~l~~~d~~tG~~~W~~--~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~--~~~---~ 68 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSY--DLGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL--PGP---I 68 (238)
T ss_dssp SEEEEEETTTTEEEEEE--ECSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC--SSC---G
T ss_pred CEEEEEECCCCCEEEEE--ECCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec--ccc---c
Confidence 35677887665 5765 2222233333 3346889998842 2459999998775 77643 332 1
Q ss_pred eEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCc--EE-eCCCCCC--CCcccEEEEECCEEEEEccCCCCCCCCC
Q 016877 164 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQ-DLPPLPV--PRYAPATQLWRGRLHVMGGSGENRYTPE 238 (381)
Q Consensus 164 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~-~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 238 (381)
....+..++.+|+... .+.++.+|.++.+ |+ .....+. .+......+.++.+|+.... ..
T Consensus 69 ~~~~~~~~~~v~v~~~---------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~ 133 (238)
T PF13360_consen 69 SGAPVVDGGRVYVGTS---------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS------GK 133 (238)
T ss_dssp GSGEEEETTEEEEEET---------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC------SE
T ss_pred cceeeecccccccccc---------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc------Cc
Confidence 1124778899988752 2468999977654 88 4433232 23344455567777777531 11
Q ss_pred ccceEeeeecCCcc--CCceEEecCCCCCCc--------ceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecC
Q 016877 239 VDHWSLAVKDGKPL--EKEWRTEIPIPRGGP--------HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD 308 (381)
Q Consensus 239 ~~~~~~~~~~~~~~--~~~W~~~~~~p~~~~--------~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (381)
... +|+. ...|+.....+.... ....+..++.+|+..+..
T Consensus 134 l~~-------~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g----------------------- 183 (238)
T PF13360_consen 134 LVA-------LDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG----------------------- 183 (238)
T ss_dssp EEE-------EETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-----------------------
T ss_pred EEE-------EecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-----------------------
Confidence 111 1233 335766544443221 123344467888876543
Q ss_pred ceeEeC-CCC--CeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCc--eE
Q 016877 309 DVYMLD-DEM--KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV--AV 376 (381)
Q Consensus 309 ~v~~yd-~~~--~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~--W~ 376 (381)
.++.+| .+. .|+.. ... ........++.||+.. .. ..++++|+++++ |+
T Consensus 184 ~~~~~d~~tg~~~w~~~--~~~----~~~~~~~~~~~l~~~~-~~------------~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 184 RVVAVDLATGEKLWSKP--ISG----IYSLPSVDGGTLYVTS-SD------------GRLYALDLKTGKVVWQ 237 (238)
T ss_dssp SEEEEETTTTEEEEEEC--SS-----ECECEECCCTEEEEEE-TT------------TEEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEEEec--CCC----ccCCceeeCCEEEEEe-CC------------CEEEEEECCCCCEEeE
Confidence 145556 444 48443 211 1111355567777776 32 148999999876 64
No 60
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.83 E-value=0.17 Score=45.41 Aligned_cols=101 Identities=15% Similarity=0.140 Sum_probs=60.5
Q ss_pred EEEecCCCCCC-cccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcE
Q 016877 125 YVFAGYGSIDY-VHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW 202 (381)
Q Consensus 125 yv~GG~~~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W 202 (381)
||-|-....+. ....+..||+.+.+|.....--. -.-..+... ++++|+.|-..-.+. ....+-.||.++.+|
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~---G~V~~l~~~~~~~Llv~G~ft~~~~--~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGIS---GTVTDLQWASNNQLLVGGNFTLNGT--NSSNLATYDFKNQTW 76 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCce---EEEEEEEEecCCEEEEEEeeEECCC--CceeEEEEecCCCee
Confidence 44444444332 23569999999999999764322 222344433 778888775443321 246688999999999
Q ss_pred EeCCC-----CCCCCcccEEEEE-CCEEEEEccC
Q 016877 203 QDLPP-----LPVPRYAPATQLW-RGRLHVMGGS 230 (381)
Q Consensus 203 ~~~~~-----~p~~r~~~~~~~~-~~~lyv~GG~ 230 (381)
+.++. +|.+......... ...+++.|..
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS 110 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCCceEEEecee
Confidence 88875 2334322222222 3457777764
No 61
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.58 E-value=0.43 Score=42.82 Aligned_cols=110 Identities=16% Similarity=0.146 Sum_probs=64.3
Q ss_pred CcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecC-----
Q 016877 188 PTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP----- 261 (381)
Q Consensus 188 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~----- 261 (381)
....+..||+.+.+|.....--.. .-.++... +++||+.|-...... . ...+..||..+.+|+.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~----~--~~~la~yd~~~~~w~~~~~~~s~~ 86 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGT----N--SSNLATYDFKNQTWSSLGGGSSNS 86 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCC----C--ceeEEEEecCCCeeeecCCccccc
Confidence 478899999999999998754222 22344434 778888886543221 1 1223445577999988755
Q ss_pred CCCCCcceeEEE-eCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeCCCCCeEEcCC
Q 016877 262 IPRGGPHRACVV-VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPS 324 (381)
Q Consensus 262 ~p~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~i~~ 324 (381)
+|.......... -..++++.|..... ..-+..| +..+|+.+..
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~~g-------------------~~~l~~~-dGs~W~~i~~ 130 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSANG-------------------STFLMKY-DGSSWSSIGS 130 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceecCC-------------------CceEEEE-cCCceEeccc
Confidence 233321111111 23467777765221 2237778 4778988865
No 62
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.56 E-value=1.4 Score=38.16 Aligned_cols=157 Identities=19% Similarity=0.168 Sum_probs=85.7
Q ss_pred eeeeeeCCCce--eeecCCCCCCCcee--EE-eee-cccccccccCcceEeecCCCC--CeEEccCCCCCCCCceEEEEC
Q 016877 50 IASNWSPYHNS--IILPNNGPQKGENI--GV-KTK-KDVVPKRILPATFQDLPAPEL--KWEKMKAAPVPRLDGAAIQIK 121 (381)
Q Consensus 50 ~~~~~d~~~~~--~~~p~~~~~~~~~~--~~-~~~-~~~~~~~~~~~~~~~~~~~~~--~W~~l~~~p~~r~~~~~~~~~ 121 (381)
.+.++|+.+++ ....... ...... .. .++ .+.. .....++.+|+.+. .|+.-. +.+-... ....+
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~---~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~~~~ 76 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVA---SGDGNLYALDAKTGKVLWRFDL--PGPISGA-PVVDG 76 (238)
T ss_dssp EEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEE---ETTSEEEEEETTTSEEEEEEEC--SSCGGSG-EEEET
T ss_pred EEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEE---cCCCEEEEEECCCCCEEEEeec--cccccce-eeecc
Confidence 67889998888 4443311 122222 22 222 3332 24457889998666 575532 2222222 46678
Q ss_pred CEEEEEecCCCCCCcccceEEEeCCCC--eEe-cCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877 122 NLLYVFAGYGSIDYVHSHVDIYNFTDN--TWG-GRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE 198 (381)
Q Consensus 122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~-~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~ 198 (381)
+.+|+.... +.++++|.++. .|+ .....+..........++.++.+|+... ...+..+|++
T Consensus 77 ~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~l~~~d~~ 140 (238)
T PF13360_consen 77 GRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---------SGKLVALDPK 140 (238)
T ss_dssp TEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET---------CSEEEEEETT
T ss_pred cccccccce-------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec---------cCcEEEEecC
Confidence 899887721 25899997776 498 4433222111334445556888877643 3568999998
Q ss_pred CCc--EEeCCCCCCCCc--------ccEEEEECCEEEEEcc
Q 016877 199 TKK--WQDLPPLPVPRY--------APATQLWRGRLHVMGG 229 (381)
Q Consensus 199 ~~~--W~~~~~~p~~r~--------~~~~~~~~~~lyv~GG 229 (381)
+.+ |+.-...+.... .....+.++.+|+..+
T Consensus 141 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 181 (238)
T PF13360_consen 141 TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSG 181 (238)
T ss_dssp TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECC
T ss_pred CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcC
Confidence 765 766433332111 1233344678888865
No 63
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.37 E-value=0.65 Score=43.49 Aligned_cols=135 Identities=16% Similarity=0.106 Sum_probs=70.6
Q ss_pred EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC---CCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877 123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR---EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET 199 (381)
Q Consensus 123 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~ 199 (381)
-+.+++|.++.- .++..|-++|. .+.++.. |. .....+..+....+++|. ..-++.||.++
T Consensus 226 plllvaG~d~~l----rifqvDGk~N~--~lqS~~l~~fPi--~~a~f~p~G~~~i~~s~r--------rky~ysyDle~ 289 (514)
T KOG2055|consen 226 PLLLVAGLDGTL----RIFQVDGKVNP--KLQSIHLEKFPI--QKAEFAPNGHSVIFTSGR--------RKYLYSYDLET 289 (514)
T ss_pred ceEEEecCCCcE----EEEEecCccCh--hheeeeeccCcc--ceeeecCCCceEEEeccc--------ceEEEEeeccc
Confidence 688888887532 36777777776 3333321 21 122223334436666663 35689999999
Q ss_pred CcEEeCCCCC--CCCcccEE-EEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCC
Q 016877 200 KKWQDLPPLP--VPRYAPAT-QLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276 (381)
Q Consensus 200 ~~W~~~~~~p--~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~ 276 (381)
.+-+++.++- ..+.-... +..++.++++-|..+.-+.. ...+++|-.--.++-..........+.
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lL------------hakT~eli~s~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLL------------HAKTKELITSFKIEGVVSDFTFSSDSK 357 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEee------------hhhhhhhhheeeeccEEeeEEEecCCc
Confidence 9988887542 11222222 23455677777765431111 133455533222332222222223456
Q ss_pred EEEEEccCC
Q 016877 277 RLLVIGGQE 285 (381)
Q Consensus 277 ~l~v~GG~~ 285 (381)
+|++.||+.
T Consensus 358 ~l~~~~~~G 366 (514)
T KOG2055|consen 358 ELLASGGTG 366 (514)
T ss_pred EEEEEcCCc
Confidence 688888764
No 64
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.30 E-value=2 Score=38.34 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=65.1
Q ss_pred CEEEEecCCCCCcccceeeeeeCCCce--eeecC-CCCCCCceeEEeee-cccccccccCcceEeecCCCCCeEE-ccCC
Q 016877 34 DFFWASSSKFTSSYLNIASNWSPYHNS--IILPN-NGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELKWEK-MKAA 108 (381)
Q Consensus 34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~-l~~~ 108 (381)
+.+|+.++.++ .+..||+.++. ..+.. ..++. .....-+. .+..+. ....+..+|..+.+... ++..
T Consensus 1 ~~~~~s~~~d~-----~v~~~d~~t~~~~~~~~~~~~~~~-l~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~ 72 (300)
T TIGR03866 1 EKAYVSNEKDN-----TISVIDTATLEVTRTFPVGQRPRG-ITLSKDGKLLYVCAS--DSDTIQVIDLATGEVIGTLPSG 72 (300)
T ss_pred CcEEEEecCCC-----EEEEEECCCCceEEEEECCCCCCc-eEECCCCCEEEEEEC--CCCeEEEEECCCCcEEEeccCC
Confidence 35777777554 77889998876 33332 11221 11111111 111111 23457788887766543 2211
Q ss_pred CCCCCCceEEEE-C-CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEE-EeCCEEEEEcCCCCCCC
Q 016877 109 PVPRLDGAAIQI-K-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV-TDGRYIYVVTGQYGPQC 185 (381)
Q Consensus 109 p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~ 185 (381)
..+ ..++.. + +.+|+.++.+ ..+.+||+.+.+-.. .++.. ....+++ .-++++++++..+.
T Consensus 73 ~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~--~~~~~--~~~~~~~~~~dg~~l~~~~~~~--- 136 (300)
T TIGR03866 73 PDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLA--EIPVG--VEPEGMAVSPDGKIVVNTSETT--- 136 (300)
T ss_pred CCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEe--EeeCC--CCcceEEECCCCCEEEEEecCC---
Confidence 111 122222 3 3566665432 248889998754222 12211 1112233 34566666654221
Q ss_pred CCCcceEEEEECCCCc
Q 016877 186 RGPTAHTFVLDTETKK 201 (381)
Q Consensus 186 ~~~~~~~~~yd~~~~~ 201 (381)
+.+..||..+.+
T Consensus 137 ----~~~~~~d~~~~~ 148 (300)
T TIGR03866 137 ----NMAHFIDTKTYE 148 (300)
T ss_pred ----CeEEEEeCCCCe
Confidence 335667877654
No 65
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.76 E-value=1.5 Score=38.53 Aligned_cols=86 Identities=21% Similarity=0.123 Sum_probs=51.2
Q ss_pred CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE--eCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTE 198 (381)
Q Consensus 121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~ 198 (381)
++.+|+.--. ...++.+|+.+++-..+. .+. ..+++. .++.+|+... .....+|++
T Consensus 11 ~g~l~~~D~~------~~~i~~~~~~~~~~~~~~-~~~-----~~G~~~~~~~g~l~v~~~----------~~~~~~d~~ 68 (246)
T PF08450_consen 11 DGRLYWVDIP------GGRIYRVDPDTGEVEVID-LPG-----PNGMAFDRPDGRLYVADS----------GGIAVVDPD 68 (246)
T ss_dssp TTEEEEEETT------TTEEEEEETTTTEEEEEE-SSS-----EEEEEEECTTSEEEEEET----------TCEEEEETT
T ss_pred CCEEEEEEcC------CCEEEEEECCCCeEEEEe-cCC-----CceEEEEccCCEEEEEEc----------CceEEEecC
Confidence 4677776321 246999999988766532 222 223444 4788888753 234667999
Q ss_pred CCcEEeCCCCC-----CCCcccEEEEECCEEEEEc
Q 016877 199 TKKWQDLPPLP-----VPRYAPATQLWRGRLHVMG 228 (381)
Q Consensus 199 ~~~W~~~~~~p-----~~r~~~~~~~~~~~lyv~G 228 (381)
+.+++.+...+ ..+.+-.++--++.||+--
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~ 103 (246)
T PF08450_consen 69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTD 103 (246)
T ss_dssp TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEE
T ss_pred CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEe
Confidence 99998876552 2233333333477888764
No 66
>PRK13684 Ycf48-like protein; Provisional
Probab=93.61 E-value=6.1 Score=36.65 Aligned_cols=156 Identities=12% Similarity=0.010 Sum_probs=74.1
Q ss_pred CCCCeEEccC-CCCCCCCc-eEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCC-CCCCccceEEEEEeCCEE
Q 016877 98 PELKWEKMKA-APVPRLDG-AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTDGRYI 174 (381)
Q Consensus 98 ~~~~W~~l~~-~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~~~~i 174 (381)
.-.+|++... +|..+... .+...++..++.|.. ..+++=+-.-.+|+++... ..|. ......+..++.+
T Consensus 74 gG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~~-~~~~i~~~~~~~~ 145 (334)
T PRK13684 74 GGETWEERSLDLPEENFRLISISFKGDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLPG-SPYLITALGPGTA 145 (334)
T ss_pred CCCCceECccCCcccccceeeeEEcCCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCCC-CceEEEEECCCcc
Confidence 4568988653 43333222 233334556666521 1122222234589987532 1211 1222333344556
Q ss_pred EEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCC
Q 016877 175 YVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK 254 (381)
Q Consensus 175 yv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (381)
|+.|. ...+++=+-.-.+|+.+.... .-..+.+....+..+++.|..+.- +.. .+....
T Consensus 146 ~~~g~---------~G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G~i-------~~s----~~~gg~ 204 (334)
T PRK13684 146 EMATN---------VGAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRGNF-------YST----WEPGQT 204 (334)
T ss_pred eeeec---------cceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCceE-------EEE----cCCCCC
Confidence 76653 233555555677899886433 223344555445555554433311 110 123345
Q ss_pred ceEEecCCCCCCcceeEE-EeCCEEEEEcc
Q 016877 255 EWRTEIPIPRGGPHRACV-VVDDRLLVIGG 283 (381)
Q Consensus 255 ~W~~~~~~p~~~~~~~~~-~~~~~l~v~GG 283 (381)
+|+......... -.+++ .-+++++++|.
T Consensus 205 tW~~~~~~~~~~-l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 205 AWTPHQRNSSRR-LQSMGFQPDGNLWMLAR 233 (334)
T ss_pred eEEEeeCCCccc-ceeeeEcCCCCEEEEec
Confidence 798775432222 22333 34678888864
No 67
>PRK13684 Ycf48-like protein; Provisional
Probab=93.37 E-value=6.6 Score=36.39 Aligned_cols=205 Identities=11% Similarity=0.125 Sum_probs=98.9
Q ss_pred eEeecCCCCCeEEccCC-CCCCCCceEEEEC-CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877 92 FQDLPAPELKWEKMKAA-PVPRLDGAAIQIK-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169 (381)
Q Consensus 92 ~~~~~~~~~~W~~l~~~-p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 169 (381)
+++-.-...+|+++... ..+.....+..++ +.+++.|.. ..+++=+-.-.+|+.+..... -..+.+..
T Consensus 111 i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~~~~---g~~~~i~~ 180 (334)
T PRK13684 111 LLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVEDAA---GVVRNLRR 180 (334)
T ss_pred EEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcCCCc---ceEEEEEE
Confidence 34433345699987532 2333333343343 356665532 124444445679998764332 23344444
Q ss_pred eCCEEEEEcCCCCCCCCCCcceEEE-EECCCCcEEeCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCccceEeeee
Q 016877 170 DGRYIYVVTGQYGPQCRGPTAHTFV-LDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSLAVK 247 (381)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~-yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~ 247 (381)
..+..|+..|..+ .++. .|....+|+.+.. +..+...+++. -++.++++|..... .+.
T Consensus 181 ~~~g~~v~~g~~G--------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G~~-------~~~---- 240 (334)
T PRK13684 181 SPDGKYVAVSSRG--------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGGQI-------RFN---- 240 (334)
T ss_pred CCCCeEEEEeCCc--------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCCEE-------EEc----
Confidence 4444555544333 1332 2455568998853 44444445444 46778888643211 010
Q ss_pred cCCccCCceEEecC-CCCCCc-ceeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeE-eCCCCCeEEcC
Q 016877 248 DGKPLEKEWRTEIP-IPRGGP-HRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYM-LDDEMKWKVLP 323 (381)
Q Consensus 248 ~~~~~~~~W~~~~~-~p~~~~-~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-yd~~~~W~~i~ 323 (381)
-+..-.+|+.+.. ...... .++++.. ++.++++|... . ++. .|...+|+.++
T Consensus 241 -s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G-~----------------------v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 241 -DPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG-T----------------------LLVSKDGGKTWEKDP 296 (334)
T ss_pred -cCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCC-e----------------------EEEeCCCCCCCeECC
Confidence 0122457876432 111111 1223322 66788877532 1 333 33678999975
Q ss_pred CCCCCCCCcceEEEEECCEEEEEcccc
Q 016877 324 SMPKPDSHIEFAWVLVNNSIVIVGGTT 350 (381)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~v~GG~~ 350 (381)
............+...++++|++|...
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~G~~G 323 (334)
T PRK13684 297 VGEEVPSNFYKIVFLDPEKGFVLGQRG 323 (334)
T ss_pred cCCCCCcceEEEEEeCCCceEEECCCc
Confidence 321111122122334467888877644
No 68
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.10 E-value=3 Score=36.80 Aligned_cols=183 Identities=17% Similarity=0.192 Sum_probs=96.3
Q ss_pred CCEEEEEecCCCCCCcccceEEEeC-----CCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEE
Q 016877 121 KNLLYVFAGYGSIDYVHSHVDIYNF-----TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL 195 (381)
Q Consensus 121 ~~~iyv~GG~~~~~~~~~~~~~yd~-----~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y 195 (381)
.+++|++.+..+. .++.|.. ..++..+.-.+|.+ -.+.+.++.++.+|-.= ...+.+.+|
T Consensus 30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~~--~~GtG~vVYngslYY~~--------~~s~~Ivky 94 (250)
T PF02191_consen 30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPYP--WQGTGHVVYNGSLYYNK--------YNSRNIVKY 94 (250)
T ss_pred CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEece--eccCCeEEECCcEEEEe--------cCCceEEEE
Confidence 4579998886543 2444432 22233333334443 33456677888888652 126889999
Q ss_pred ECCCCcEEeCCCCCCCCcc------------cEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccC----CceEEe
Q 016877 196 DTETKKWQDLPPLPVPRYA------------PATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLE----KEWRTE 259 (381)
Q Consensus 196 d~~~~~W~~~~~~p~~r~~------------~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~----~~W~~~ 259 (381)
|+.+++=.....+|.+... .-.++-++-|+|+=..... .-.+.+...||.+ .+|..-
T Consensus 95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~-------~g~ivvskld~~tL~v~~tw~T~ 167 (250)
T PF02191_consen 95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN-------NGNIVVSKLDPETLSVEQTWNTS 167 (250)
T ss_pred ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC-------CCcEEEEeeCcccCceEEEEEec
Confidence 9998875422223322222 2334445567777433221 1123344445543 456642
Q ss_pred cCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEE
Q 016877 260 IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVL 338 (381)
Q Consensus 260 ~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~ 338 (381)
.++.... .+.++=|.||++....... ..-.|.|| .+++=. ...++.+......+++.
T Consensus 168 --~~k~~~~-naFmvCGvLY~~~s~~~~~------------------~~I~yafDt~t~~~~-~~~i~f~~~~~~~~~l~ 225 (250)
T PF02191_consen 168 --YPKRSAG-NAFMVCGVLYATDSYDTRD------------------TEIFYAFDTYTGKEE-DVSIPFPNPYGNISMLS 225 (250)
T ss_pred --cCchhhc-ceeeEeeEEEEEEECCCCC------------------cEEEEEEECCCCcee-ceeeeeccccCceEeee
Confidence 3333322 3455667899987765331 11247888 544433 23445444444455566
Q ss_pred EC---CEEEEEc
Q 016877 339 VN---NSIVIVG 347 (381)
Q Consensus 339 ~~---~~l~v~G 347 (381)
++ .+||+.-
T Consensus 226 YNP~dk~LY~wd 237 (250)
T PF02191_consen 226 YNPRDKKLYAWD 237 (250)
T ss_pred ECCCCCeEEEEE
Confidence 64 7888874
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.68 E-value=5.9 Score=37.55 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=66.5
Q ss_pred EEECCEEEEEecCCCCCCcccceEEEeCCCC-eEecCCCCCCCCccceEEEEEeC-CEEEEEcCCCCCCCCCCcceEEEE
Q 016877 118 IQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN-TWGGRFDMPREMAHSHLGMVTDG-RYIYVVTGQYGPQCRGPTAHTFVL 195 (381)
Q Consensus 118 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~y 195 (381)
...++.|++.||+++ .+-.||..+. .|..--+-..|. ..-+++-+ ..|-..|| +.+-++
T Consensus 162 ~~~~~hivvtGsYDg------~vrl~DtR~~~~~v~elnhg~pV---e~vl~lpsgs~iasAgG----------n~vkVW 222 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDG------KVRLWDTRSLTSRVVELNHGCPV---ESVLALPSGSLIASAGG----------NSVKVW 222 (487)
T ss_pred ccCCCeEEEecCCCc------eEEEEEeccCCceeEEecCCCce---eeEEEcCCCCEEEEcCC----------CeEEEE
Confidence 344678999999985 3566788777 444322222222 12233333 34445555 556677
Q ss_pred ECCCCcEEeCCCCC-CCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEE-
Q 016877 196 DTETKKWQDLPPLP-VPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV- 272 (381)
Q Consensus 196 d~~~~~W~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~- 272 (381)
|..+.. +.+..+- .-..--++... ++.-++.||.+. .+..|+ +..|+.+-.+..+..-.+++
T Consensus 223 Dl~~G~-qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd---------~t~~Kvv~s~~~~~pvLsiav 287 (487)
T KOG0310|consen 223 DLTTGG-QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFD---------TTNYKVVHSWKYPGPVLSIAV 287 (487)
T ss_pred EecCCc-eehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEEE---------ccceEEEEeeecccceeeEEe
Confidence 776543 1111111 11111222222 345666666554 344444 33444443322222222433
Q ss_pred EeCCEEEEEccCCCC
Q 016877 273 VVDDRLLVIGGQEGD 287 (381)
Q Consensus 273 ~~~~~l~v~GG~~~~ 287 (381)
.-++.-.++|..++.
T Consensus 288 s~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 288 SPDDQTVVIGMSNGL 302 (487)
T ss_pred cCCCceEEEecccce
Confidence 346778888887654
No 70
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=92.54 E-value=6.4 Score=34.03 Aligned_cols=61 Identities=5% Similarity=-0.059 Sum_probs=30.0
Q ss_pred CEEEEEecCCCCCCcccceEEEeCCCCeEec-CCCCCCCCccceEEEEEeC-CEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877 122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG-RFDMPREMAHSHLGMVTDG-RYIYVVTGQYGPQCRGPTAHTFVLDTET 199 (381)
Q Consensus 122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~yd~~~ 199 (381)
+.+++.++.+ ..+.+||+.+.+-.. +.... ..-.++.... +.+++.|..+ ..+..||..+
T Consensus 105 ~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~~--------~~i~i~d~~~ 166 (289)
T cd00200 105 GRILSSSSRD------KTIKVWDVETGKCLTTLRGHT----DWVNSVAFSPDGTFVASSSQD--------GTIKLWDLRT 166 (289)
T ss_pred CCEEEEecCC------CeEEEEECCCcEEEEEeccCC----CcEEEEEEcCcCCEEEEEcCC--------CcEEEEEccc
Confidence 3666666532 358888987544322 22111 1122334443 4444444312 3478888874
Q ss_pred C
Q 016877 200 K 200 (381)
Q Consensus 200 ~ 200 (381)
.
T Consensus 167 ~ 167 (289)
T cd00200 167 G 167 (289)
T ss_pred c
Confidence 3
No 71
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.20 E-value=6.3 Score=34.52 Aligned_cols=123 Identities=14% Similarity=0.080 Sum_probs=67.7
Q ss_pred CcceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC---CCCccc
Q 016877 89 PATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP---REMAHS 163 (381)
Q Consensus 89 ~~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~~~r~ 163 (381)
...++++++.+.+-+.+ ..+. -.+++.. ++++|+.... .+.++|+.+++++.+...+ .+..+.
T Consensus 21 ~~~i~~~~~~~~~~~~~-~~~~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVI-DLPG---PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TTEEEEEETTTTEEEEE-ESSS---EEEEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred CCEEEEEECCCCeEEEE-ecCC---CceEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEeeccCCCcccCCC
Confidence 34788888887754332 2222 2333433 6788887642 2566799999999876653 133455
Q ss_pred eEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC-CCCCCCcccEEEEE-C-CEEEEE
Q 016877 164 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLW-R-GRLHVM 227 (381)
Q Consensus 164 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~-~-~~lyv~ 227 (381)
+-.++.-++.||+---............++++++. .+.+.+. .+..| ..++.. + +.||+.
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEE
T ss_pred ceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeec
Confidence 55566667888875321111111111679999999 6655543 22222 233333 3 357775
No 72
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=91.59 E-value=12 Score=35.44 Aligned_cols=126 Identities=10% Similarity=0.067 Sum_probs=71.8
Q ss_pred ccCcceEeecCCCCCeEEccCCC--CCCCCce-EEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccc
Q 016877 87 ILPATFQDLPAPELKWEKMKAAP--VPRLDGA-AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHS 163 (381)
Q Consensus 87 ~~~~~~~~~~~~~~~W~~l~~~p--~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~ 163 (381)
.....++.||..+.+-+++.++. +.+.-.. .++.++.++++-|.. ..+..+..+|+.|..--.++. .-.
T Consensus 277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~KieG--~v~ 348 (514)
T KOG2055|consen 277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSFKIEG--VVS 348 (514)
T ss_pred ccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhheeeecc--EEe
Confidence 34456889999998888877643 1112111 234455566666543 246777888888876545554 223
Q ss_pred eEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEE-EECCEEEEEcc
Q 016877 164 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ-LWRGRLHVMGG 229 (381)
Q Consensus 164 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG 229 (381)
..+....+..||+.||. ..||.+|..++.-...=.-.-..++-+.| ..++.++..|.
T Consensus 349 ~~~fsSdsk~l~~~~~~---------GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGGT---------GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS 406 (514)
T ss_pred eEEEecCCcEEEEEcCC---------ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc
Confidence 44445566788888873 45999999987421110011122333444 34666555554
No 73
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.54 E-value=7.4 Score=34.51 Aligned_cols=152 Identities=11% Similarity=0.092 Sum_probs=84.1
Q ss_pred cCEEEEecCCCCCcccceeeeeeCCCce-eeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEccCCCCC
Q 016877 33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVP 111 (381)
Q Consensus 33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~ 111 (381)
++.||+.|-. | ..-+.||.++. ...|...-...+|+++.-+..+--..+..+.+...|+....=+.++ .|.+
T Consensus 158 ~G~lWFt~q~-G-----~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p-~P~~ 230 (353)
T COG4257 158 WGNLWFTGQI-G-----AYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVP-QPNA 230 (353)
T ss_pred CccEEEeecc-c-----cceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceec-CCCc
Confidence 4678888751 1 23488999998 5455443334556655433222222233345667777765322222 2333
Q ss_pred CCC-ceE--EEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCC
Q 016877 112 RLD-GAA--IQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGP 188 (381)
Q Consensus 112 r~~-~~~--~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 188 (381)
... ..- ..-.+++.+. ..-...+.+|||...+|.+-+ +|..-+|.....+-.-+.+++.- ..
T Consensus 231 ~~~gsRriwsdpig~~wit------twg~g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~se--------a~ 295 (353)
T COG4257 231 LKAGSRRIWSDPIGRAWIT------TWGTGSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSE--------AD 295 (353)
T ss_pred ccccccccccCccCcEEEe------ccCCceeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEeec--------cc
Confidence 111 111 1124466664 111346899999999999863 44322344444444456677641 22
Q ss_pred cceEEEEECCCCcEEeCC
Q 016877 189 TAHTFVLDTETKKWQDLP 206 (381)
Q Consensus 189 ~~~~~~yd~~~~~W~~~~ 206 (381)
.+.+.+||+++.+.+.++
T Consensus 296 agai~rfdpeta~ftv~p 313 (353)
T COG4257 296 AGAIGRFDPETARFTVLP 313 (353)
T ss_pred cCceeecCcccceEEEec
Confidence 577899999999988764
No 74
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=90.51 E-value=15 Score=34.21 Aligned_cols=236 Identities=14% Similarity=0.179 Sum_probs=103.4
Q ss_pred ceEeec--CCCCCeEEccCCCCCCCCceEEEE---CCEEEEEecCCCCCCcccceEEEeCCCC-eEecC---------CC
Q 016877 91 TFQDLP--APELKWEKMKAAPVPRLDGAAIQI---KNLLYVFAGYGSIDYVHSHVDIYNFTDN-TWGGR---------FD 155 (381)
Q Consensus 91 ~~~~~~--~~~~~W~~l~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~-~W~~~---------~~ 155 (381)
.+..|. ..+.+.+.+...+........+.+ +..||+.- +. ..++.+|++..+ +-... .+
T Consensus 63 ~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~ 136 (345)
T PF10282_consen 63 GVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGP 136 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEES
T ss_pred CEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCC
Confidence 444444 443567776665533333333333 33666643 21 234667777653 21111 01
Q ss_pred CC-CCCccceEEEEEe--CCEEEEEcCCCCCCCCCCcceEEEEECCCCc--EEeCC--CCCCCCcccEEEEE--CCEEEE
Q 016877 156 MP-REMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLP--PLPVPRYAPATQLW--RGRLHV 226 (381)
Q Consensus 156 ~~-~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~--~~p~~r~~~~~~~~--~~~lyv 226 (381)
-+ .......|.+... ++.+|+.- - -.+.++.|+..... .+... .+|..-.-..++.. +..+||
T Consensus 137 ~~~rq~~~h~H~v~~~pdg~~v~v~d---l-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv 208 (345)
T PF10282_consen 137 NPDRQEGPHPHQVVFSPDGRFVYVPD---L-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYV 208 (345)
T ss_dssp STTTTSSTCEEEEEE-TTSSEEEEEE---T-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEE
T ss_pred cccccccccceeEEECCCCCEEEEEe---c-----CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEE
Confidence 11 1111234555554 34677763 1 14678888887665 54432 22221111122332 347899
Q ss_pred EccCCCCCCCCCccceEeeeecCCccCCceEEe---cCCCCCC----cceeEEEe--CCEEEEEccCCCCCCCCCCCCcc
Q 016877 227 MGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE---IPIPRGG----PHRACVVV--DDRLLVIGGQEGDFMAKPGSPIF 297 (381)
Q Consensus 227 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~---~~~p~~~----~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~ 297 (381)
+.-.. +.+..|++ ++.+.+++.. +.+|... ....++.. +..||+-....+
T Consensus 209 ~~e~s-----~~v~v~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~----------- 267 (345)
T PF10282_consen 209 VNELS-----NTVSVFDY-----DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN----------- 267 (345)
T ss_dssp EETTT-----TEEEEEEE-----ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT-----------
T ss_pred ecCCC-----CcEEEEee-----cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC-----------
Confidence 86433 23444433 3445555543 3343321 22233333 445777543211
Q ss_pred ccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceE
Q 016877 298 KCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAV 376 (381)
Q Consensus 298 ~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 376 (381)
.-.+|..| .+.+-+.+...+..-......++-.+++.++++...... -.++..|.+++.++
T Consensus 268 ---------sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~---------v~vf~~d~~tG~l~ 329 (345)
T PF10282_consen 268 ---------SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT---------VSVFDIDPDTGKLT 329 (345)
T ss_dssp ---------EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE---------EEEEEEETTTTEEE
T ss_pred ---------EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe---------EEEEEEeCCCCcEE
Confidence 11244554 444555554333211111111123355555555444332 13555677888887
Q ss_pred Eee
Q 016877 377 LNA 379 (381)
Q Consensus 377 ~i~ 379 (381)
.+.
T Consensus 330 ~~~ 332 (345)
T PF10282_consen 330 PVG 332 (345)
T ss_dssp EEE
T ss_pred Eec
Confidence 654
No 75
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=89.38 E-value=15 Score=32.60 Aligned_cols=66 Identities=15% Similarity=0.244 Sum_probs=35.7
Q ss_pred EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcE
Q 016877 123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW 202 (381)
Q Consensus 123 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W 202 (381)
++|+.++.+ ..+.++|+.+++-...-..... .+ .....-.+..+|+.++. .+.+..||..+.+.
T Consensus 2 ~~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~~-~~-~l~~~~dg~~l~~~~~~--------~~~v~~~d~~~~~~ 65 (300)
T TIGR03866 2 KAYVSNEKD------NTISVIDTATLEVTRTFPVGQR-PR-GITLSKDGKLLYVCASD--------SDTIQVIDLATGEV 65 (300)
T ss_pred cEEEEecCC------CEEEEEECCCCceEEEEECCCC-CC-ceEECCCCCEEEEEECC--------CCeEEEEECCCCcE
Confidence 567777654 2588889887654332221111 12 11111223457777642 24588899988765
Q ss_pred Ee
Q 016877 203 QD 204 (381)
Q Consensus 203 ~~ 204 (381)
..
T Consensus 66 ~~ 67 (300)
T TIGR03866 66 IG 67 (300)
T ss_pred EE
Confidence 43
No 76
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=88.99 E-value=4.4 Score=31.59 Aligned_cols=82 Identities=12% Similarity=0.239 Sum_probs=54.8
Q ss_pred EeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC---CCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEee
Q 016877 169 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLA 245 (381)
Q Consensus 169 ~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 245 (381)
..+|-+|-..-... .....+.+||.++.+|+.++- .........++.++|+|-++.-..... ....+.|.++
T Consensus 3 cinGvly~~a~~~~----~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvLe 77 (129)
T PF08268_consen 3 CINGVLYWLAWSED----SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVLE 77 (129)
T ss_pred EECcEEEeEEEECC----CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEee
Confidence 46777776554311 125778999999999988863 235567777888999998875443221 2346777765
Q ss_pred eecCCccCCceEEe
Q 016877 246 VKDGKPLEKEWRTE 259 (381)
Q Consensus 246 ~~~~~~~~~~W~~~ 259 (381)
|..+.+|...
T Consensus 78 ----D~~k~~Wsk~ 87 (129)
T PF08268_consen 78 ----DYEKQEWSKK 87 (129)
T ss_pred ----ccccceEEEE
Confidence 4557899865
No 77
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.59 E-value=6.7 Score=34.73 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=63.9
Q ss_pred ceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccc
Q 016877 163 SHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDH 241 (381)
Q Consensus 163 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~ 241 (381)
+--++.. .++.+|.--|..+ -+.+.+||+++.+=....++|..-.+=.++.++++||.+-=.++. .-.
T Consensus 46 FTQGL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~-----~f~ 114 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGT-----GFV 114 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSE-----EEE
T ss_pred cCccEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCe-----EEE
Confidence 3345555 6889999888766 467999999999877767788888888899999999999644332 112
Q ss_pred eEeeeecCCccCCceEEecC--CCCCCcceeEEEeCCEEEEEccCC
Q 016877 242 WSLAVKDGKPLEKEWRTEIP--IPRGGPHRACVVVDDRLLVIGGQE 285 (381)
Q Consensus 242 ~~~~~~~~~~~~~~W~~~~~--~p~~~~~~~~~~~~~~l~v~GG~~ 285 (381)
| |+. +.+.+.. .+..+. +.+..+..|++-.|.+
T Consensus 115 y-------d~~--tl~~~~~~~y~~EGW--GLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 115 Y-------DPN--TLKKIGTFPYPGEGW--GLTSDGKRLIMSDGSS 149 (264)
T ss_dssp E-------ETT--TTEEEEEEE-SSS----EEEECSSCEEEE-SSS
T ss_pred E-------ccc--cceEEEEEecCCcce--EEEcCCCEEEEECCcc
Confidence 2 222 2333322 233333 6777788888877754
No 78
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.38 E-value=6.9 Score=34.65 Aligned_cols=96 Identities=15% Similarity=0.197 Sum_probs=62.2
Q ss_pred ECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCcccc
Q 016877 220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKC 299 (381)
Q Consensus 220 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~ 299 (381)
.++.+|.--|..+.. .... +|+.+++-....++|...++-+++.++++||..--.++
T Consensus 54 ~~g~LyESTG~yG~S---~l~~-------~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~------------- 110 (264)
T PF05096_consen 54 DDGTLYESTGLYGQS---SLRK-------VDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEG------------- 110 (264)
T ss_dssp ETTEEEEEECSTTEE---EEEE-------EETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSS-------------
T ss_pred CCCEEEEeCCCCCcE---EEEE-------EECCCCcEEEEEECCccccceeEEEECCEEEEEEecCC-------------
Confidence 578999998876531 2222 24677777777788888888899999999999875543
Q ss_pred ccCceeecCceeEeCCCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccc
Q 016877 300 SRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTT 350 (381)
Q Consensus 300 ~~~~~~~~~~v~~yd~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~ 350 (381)
..+.|| .++.+.+...+.+...- +++..+..|++--|.+
T Consensus 111 ---------~~f~yd-~~tl~~~~~~~y~~EGW--GLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 111 ---------TGFVYD-PNTLKKIGTFPYPGEGW--GLTSDGKRLIMSDGSS 149 (264)
T ss_dssp ---------EEEEEE-TTTTEEEEEEE-SSS----EEEECSSCEEEE-SSS
T ss_pred ---------eEEEEc-cccceEEEEEecCCcce--EEEcCCCEEEEECCcc
Confidence 378886 34566776665554443 4566677888888854
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.58 E-value=27 Score=33.36 Aligned_cols=102 Identities=15% Similarity=0.098 Sum_probs=52.0
Q ss_pred ECCEEEEEecCCCCCCcccceEEEeCCCCeEe-cCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877 120 IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWG-GRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE 198 (381)
Q Consensus 120 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~ 198 (381)
.++.+++.|+.+. -+-.+|..+..-. .+.....- -|+ .++.-.++.|++.||+++. +-.||..
T Consensus 121 ~d~t~l~s~sDd~------v~k~~d~s~a~v~~~l~~htDY-VR~-g~~~~~~~hivvtGsYDg~--------vrl~DtR 184 (487)
T KOG0310|consen 121 QDNTMLVSGSDDK------VVKYWDLSTAYVQAELSGHTDY-VRC-GDISPANDHIVVTGSYDGK--------VRLWDTR 184 (487)
T ss_pred cCCeEEEecCCCc------eEEEEEcCCcEEEEEecCCcce-eEe-eccccCCCeEEEecCCCce--------EEEEEec
Confidence 5778999987543 2334455444421 11111111 132 2344467789999999883 5568877
Q ss_pred CCcEEeCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEe
Q 016877 199 TKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSL 244 (381)
Q Consensus 199 ~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~ 244 (381)
+.+ ..+-.+.....--.++.+ .+.+++..| .+.+.+|++
T Consensus 185 ~~~-~~v~elnhg~pVe~vl~lpsgs~iasAg------Gn~vkVWDl 224 (487)
T KOG0310|consen 185 SLT-SRVVELNHGCPVESVLALPSGSLIASAG------GNSVKVWDL 224 (487)
T ss_pred cCC-ceeEEecCCCceeeEEEcCCCCEEEEcC------CCeEEEEEe
Confidence 763 222222222111223333 335555444 235778876
No 80
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=87.40 E-value=20 Score=31.58 Aligned_cols=255 Identities=15% Similarity=0.103 Sum_probs=106.6
Q ss_pred heeEcCEEEE--ecC-CCCCcccceeeeeeCCCce-eeecC----CCCCC------CceeEEeee-ccc-------cccc
Q 016877 29 FALVADFFWA--SSS-KFTSSYLNIASNWSPYHNS-IILPN----NGPQK------GENIGVKTK-KDV-------VPKR 86 (381)
Q Consensus 29 ~~~~~~~ly~--~GG-~~~~~~~~~~~~~d~~~~~-~~~p~----~~~~~------~~~~~~~~~-~~~-------~~~~ 86 (381)
+-|.++.||+ .+| +-|...|...+.-....++ ...|. .+|.. .+++.+++. .+. ....
T Consensus 21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~k 100 (367)
T PF12217_consen 21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNK 100 (367)
T ss_dssp -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--
T ss_pred ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhh
Confidence 3467888875 344 5576777776666666666 44444 22221 233333333 221 1111
Q ss_pred ccCcceE-eecCCCCCeEE--ccCCCC-------CCCCceEEEECCEEEEEecCCCCCCcccc-eEEEeC----CCCeEe
Q 016877 87 ILPATFQ-DLPAPELKWEK--MKAAPV-------PRLDGAAIQIKNLLYVFAGYGSIDYVHSH-VDIYNF----TDNTWG 151 (381)
Q Consensus 87 ~~~~~~~-~~~~~~~~W~~--l~~~p~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~-~~~yd~----~~~~W~ 151 (381)
.....++ +--...+.|+. |+.+|. .-.-|+.+.+++.-|.+|=.++.-.+..- +..|.. ....-+
T Consensus 101 m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vr 180 (367)
T PF12217_consen 101 MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVR 180 (367)
T ss_dssp EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EE
T ss_pred hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceee
Confidence 1111111 11234567854 444443 33457888888888888865443322111 222211 111111
Q ss_pred -cCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC-CCCCCCcccEEEEECCEEEEEcc
Q 016877 152 -GRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLWRGRLHVMGG 229 (381)
Q Consensus 152 -~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~lyv~GG 229 (381)
.++.- ........++-.+++++|+.---.... ..-+.+.+-+..-..|+.+. +-..-....-.+.+++.||+||-
T Consensus 181 r~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~~--~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 181 RIIPSE-YERNASEPCVKYYDGVLYLTTRGTLPT--NPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp EE--GG-G-TTEEEEEEEEETTEEEEEEEES-TT--S---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred eechhh-hccccccchhhhhCCEEEEEEcCcCCC--CCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEec
Confidence 22211 111345567788999999986322221 12356777777778898775 21222333345678999999986
Q ss_pred CCC----------CCCC---CCccceEeeeecCCccCCceEEecC------CCCCCcce-eEEEeCCEE-EEEccCCC
Q 016877 230 SGE----------NRYT---PEVDHWSLAVKDGKPLEKEWRTEIP------IPRGGPHR-ACVVVDDRL-LVIGGQEG 286 (381)
Q Consensus 230 ~~~----------~~~~---~~~~~~~~~~~~~~~~~~~W~~~~~------~p~~~~~~-~~~~~~~~l-~v~GG~~~ 286 (381)
... .+|. |.+-.-...+.+..++.-+|..+.. .-.+..+. ++|+-++-| |+|||.+.
T Consensus 258 ERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~ 335 (367)
T PF12217_consen 258 ERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDF 335 (367)
T ss_dssp -SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-S
T ss_pred cccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCccc
Confidence 432 1121 1111122334444566777876532 12222233 344556665 67898764
No 81
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=87.23 E-value=19 Score=31.33 Aligned_cols=150 Identities=20% Similarity=0.264 Sum_probs=79.8
Q ss_pred CeEEccCCC-----CCCCCceEEE-ECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeC-CE
Q 016877 101 KWEKMKAAP-----VPRLDGAAIQ-IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDG-RY 173 (381)
Q Consensus 101 ~W~~l~~~p-----~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~-~~ 173 (381)
-|+...|+. .|-....... -.+.|+..||. ..+++.|+++++.++.-.-. ..+-|+++.-+ +-
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rGH---tDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYRGH---TDYVHSVVGRNANG 169 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcCC---cceeeeeeecccCc
Confidence 576665543 3333322222 35688888873 34889999999988752222 24556676632 22
Q ss_pred EEEEcCCCCCCCCCCcceEEEEECCCCcEEeC-C-----CCCCCCccc--EEEEECCEEEEEccCCCCCCCCCccceEee
Q 016877 174 IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL-P-----PLPVPRYAP--ATQLWRGRLHVMGGSGENRYTPEVDHWSLA 245 (381)
Q Consensus 174 iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~-~-----~~p~~r~~~--~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 245 (381)
-.+.|+.++ .+-.+|.+|.+=..+ . .+..|..+. .+...+....|.||.. ....|.+.
T Consensus 170 qilsG~EDG--------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp------~lslwhLr 235 (325)
T KOG0649|consen 170 QILSGAEDG--------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP------KLSLWHLR 235 (325)
T ss_pred ceeecCCCc--------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC------ceeEEecc
Confidence 234566555 255677777765433 1 122222222 4445566677777743 34556642
Q ss_pred eecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccC
Q 016877 246 VKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQ 284 (381)
Q Consensus 246 ~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~ 284 (381)
..+=+.+-|.|... ..+.+.+...++||.
T Consensus 236 -------sse~t~vfpipa~v---~~v~F~~d~vl~~G~ 264 (325)
T KOG0649|consen 236 -------SSESTCVFPIPARV---HLVDFVDDCVLIGGE 264 (325)
T ss_pred -------CCCceEEEecccce---eEeeeecceEEEecc
Confidence 33333344444432 345665666666664
No 82
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=86.70 E-value=27 Score=32.46 Aligned_cols=94 Identities=18% Similarity=0.107 Sum_probs=48.3
Q ss_pred EEecCCC-CCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE--eCCEEEEEcCCCCCCCCCCcceEEEE--ECCCC
Q 016877 126 VFAGYGS-IDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVL--DTETK 200 (381)
Q Consensus 126 v~GG~~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~y--d~~~~ 200 (381)
++|++.. ...-. .++.||.++.+++.+...... ....-++. .++.||+....... ...+..| +.++.
T Consensus 3 ~vgsy~~~~~~gI-~~~~~d~~~g~l~~~~~~~~~--~~Ps~l~~~~~~~~LY~~~e~~~~-----~g~v~~~~i~~~~g 74 (345)
T PF10282_consen 3 YVGSYTNGKGGGI-YVFRFDEETGTLTLVQTVAEG--ENPSWLAVSPDGRRLYVVNEGSGD-----SGGVSSYRIDPDTG 74 (345)
T ss_dssp EEEECCSSSSTEE-EEEEEETTTTEEEEEEEEEES--SSECCEEE-TTSSEEEEEETTSST-----TTEEEEEEEETTTT
T ss_pred EEEcCCCCCCCcE-EEEEEcCCCCCceEeeeecCC--CCCceEEEEeCCCEEEEEEccccC-----CCCEEEEEECCCcc
Confidence 4565553 22211 366677799999887543221 11122333 56789988643211 2344444 55556
Q ss_pred cEEeCCCCCCCCcccEEEEE---CCEEEEE
Q 016877 201 KWQDLPPLPVPRYAPATQLW---RGRLHVM 227 (381)
Q Consensus 201 ~W~~~~~~p~~r~~~~~~~~---~~~lyv~ 227 (381)
+.+.+...+......+...+ +..||+.
T Consensus 75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred eeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 78877765533333333333 3445555
No 83
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=86.57 E-value=14 Score=34.05 Aligned_cols=66 Identities=15% Similarity=0.097 Sum_probs=36.9
Q ss_pred cCcceEeecCCCCCeEEccCCCCC-CCCc-----eEEE-ECC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC
Q 016877 88 LPATFQDLPAPELKWEKMKAAPVP-RLDG-----AAIQ-IKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR 158 (381)
Q Consensus 88 ~~~~~~~~~~~~~~W~~l~~~p~~-r~~~-----~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 158 (381)
....+..||..+.+-..--.+|.. |... .... -++ .+||.= -.+..+|-+.|++.++-...-+.|.
T Consensus 65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-----~TPa~SVtVVDl~~~kvv~ei~~PG 138 (342)
T PF06433_consen 65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN-----FTPATSVTVVDLAAKKVVGEIDTPG 138 (342)
T ss_dssp EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE-----ESSSEEEEEEETTTTEEEEEEEGTS
T ss_pred ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEc-----cCCCCeEEEEECCCCceeeeecCCC
Confidence 344677899988754332234432 5432 1222 244 666652 2345679999999998766444443
No 84
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=86.23 E-value=19 Score=30.32 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=15.3
Q ss_pred EEEeCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877 167 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE 198 (381)
Q Consensus 167 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~ 198 (381)
+....+++|+|-| +.+|+++..
T Consensus 12 ~~~~~g~~y~FkG----------~~~w~~~~~ 33 (194)
T cd00094 12 VTTLRGELYFFKG----------RYFWRLSPG 33 (194)
T ss_pred EEEeCCEEEEEeC----------CEEEEEeCC
Confidence 3445699999965 457778765
No 85
>smart00284 OLF Olfactomedin-like domains.
Probab=85.97 E-value=24 Score=31.20 Aligned_cols=184 Identities=14% Similarity=0.130 Sum_probs=91.2
Q ss_pred CCEEEEEecCCCCCCcccceEEEeC----CCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEE
Q 016877 121 KNLLYVFAGYGSIDYVHSHVDIYNF----TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD 196 (381)
Q Consensus 121 ~~~iyv~GG~~~~~~~~~~~~~yd~----~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd 196 (381)
++++|++-+.... .+.++.|.- ...++.+.-.+|.+ -.+.+.++.++.+|..-. ....+.+||
T Consensus 34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~~Lp~~--~~GtG~VVYngslYY~~~--------~s~~iiKyd 100 (255)
T smart00284 34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDHPLPHA--GQGTGVVVYNGSLYFNKF--------NSHDICRFD 100 (255)
T ss_pred CceEEEEccccCC---CcEEEEecCHHHHhccCCceEEECCCc--cccccEEEECceEEEEec--------CCccEEEEE
Confidence 4678887664311 123444432 23333332234543 345677889999997521 257799999
Q ss_pred CCCCcEEeCCCCCCCCcc------------cEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccC----CceEEec
Q 016877 197 TETKKWQDLPPLPVPRYA------------PATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLE----KEWRTEI 260 (381)
Q Consensus 197 ~~~~~W~~~~~~p~~r~~------------~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~----~~W~~~~ 260 (381)
+.+.+-.....+|.+.+. .-.++-++-|+|+=..... .=.+.+...||.+ .+|..
T Consensus 101 L~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~-------~g~ivvSkLnp~tL~ve~tW~T-- 171 (255)
T smart00284 101 LTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN-------AGKIVISKLNPATLTIENTWIT-- 171 (255)
T ss_pred CCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC-------CCCEEEEeeCcccceEEEEEEc--
Confidence 999886544444433211 1233344556666222110 0123333444543 45665
Q ss_pred CCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEE
Q 016877 261 PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLV 339 (381)
Q Consensus 261 ~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~ 339 (381)
..++...+ .+.++=|.||+.-..... . ..-.|.|| .+.+ ..-..+|.+.....++++-+
T Consensus 172 ~~~k~sa~-naFmvCGvLY~~~s~~~~--------------~----~~I~yayDt~t~~-~~~~~i~f~n~y~~~s~l~Y 231 (255)
T smart00284 172 TYNKRSAS-NAFMICGILYVTRSLGSK--------------G----EKVFYAYDTNTGK-EGHLDIPFENMYEYISMLDY 231 (255)
T ss_pred CCCccccc-ccEEEeeEEEEEccCCCC--------------C----cEEEEEEECCCCc-cceeeeeeccccccceecee
Confidence 33333322 344555688888642211 0 11157888 4443 22233444444433445555
Q ss_pred ---CCEEEEE
Q 016877 340 ---NNSIVIV 346 (381)
Q Consensus 340 ---~~~l~v~ 346 (381)
+.+||+.
T Consensus 232 NP~d~~LY~w 241 (255)
T smart00284 232 NPNDRKLYAW 241 (255)
T ss_pred CCCCCeEEEE
Confidence 4788886
No 86
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=85.40 E-value=28 Score=31.39 Aligned_cols=160 Identities=17% Similarity=0.107 Sum_probs=82.2
Q ss_pred cCCCCCCCCccceEEEEEeCCEEEEEcCCC-------CCCC-------CCCcceEEEEECCCCc----EEeCCCCCCCCc
Q 016877 152 GRFDMPREMAHSHLGMVTDGRYIYVVTGQY-------GPQC-------RGPTAHTFVLDTETKK----WQDLPPLPVPRY 213 (381)
Q Consensus 152 ~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-------~~~~-------~~~~~~~~~yd~~~~~----W~~~~~~p~~r~ 213 (381)
.+.+.|..-...+.++..+++.|| |||.- +... ..-.+.+..||.++++ |.+--.-+ +.
T Consensus 27 lvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~--~~ 103 (339)
T PF09910_consen 27 LVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDK--TK 103 (339)
T ss_pred eccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCc--cc
Confidence 355555544456677888899888 78751 1100 0124678899999877 65533222 22
Q ss_pred ccEEE------EECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCC
Q 016877 214 APATQ------LWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGD 287 (381)
Q Consensus 214 ~~~~~------~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~ 287 (381)
...-+ .++++|++.-+-.. -++-+++.|..+..=+.+..-|... .....+...|-+ .+..
T Consensus 104 WaGEVSdIlYdP~~D~LLlAR~DGh---------~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~ 169 (339)
T PF09910_consen 104 WAGEVSDILYDPYEDRLLLARADGH---------ANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFH 169 (339)
T ss_pred cccchhheeeCCCcCEEEEEecCCc---------ceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccc
Confidence 22221 14788888753211 1233333356666666654444332 334444444433 1111
Q ss_pred CCCCCCCCccccccCceeecCceeEeC-CCCCe--EEcCCC------CCCCCCcceEEEEECCEEEEE
Q 016877 288 FMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW--KVLPSM------PKPDSHIEFAWVLVNNSIVIV 346 (381)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W--~~i~~~------~~~~~~~~~~~~~~~~~l~v~ 346 (381)
. -...+.++| .+.+| +..+.- +.-+...+ .++...++++.|
T Consensus 170 ~-----------------g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G-~~~s~ynR~faF 219 (339)
T PF09910_consen 170 K-----------------GVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELG-AMASAYNRLFAF 219 (339)
T ss_pred c-----------------CCceEEEEEccCCeEEEEecccccCCCCCceEeeccc-cEEEEeeeEEEE
Confidence 1 134588898 88999 433211 11111222 356677777665
No 87
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=84.16 E-value=29 Score=31.82 Aligned_cols=122 Identities=15% Similarity=0.137 Sum_probs=76.1
Q ss_pred cceEeecCCCC-----CeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCe-EecCCCCCCCCccc
Q 016877 90 ATFQDLPAPEL-----KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT-WGGRFDMPREMAHS 163 (381)
Q Consensus 90 ~~~~~~~~~~~-----~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~r~ 163 (381)
..+..|+..+. +.+.+.....+-.-.+++.+++++.+.-| +.+.+|++..++ +...+.+..+. .
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~~--~ 131 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSPF--Y 131 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BSS--S
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecceE--E
Confidence 45677776663 55555544444445667778999776665 358888888888 88887776643 5
Q ss_pred eEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEc
Q 016877 164 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMG 228 (381)
Q Consensus 164 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~G 228 (381)
..++.+.++.|++---.. .-.++.|+.+..+-..++.-..++...++..+ ++..++.+
T Consensus 132 i~sl~~~~~~I~vgD~~~-------sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 132 ITSLSVFKNYILVGDAMK-------SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp EEEEEEETTEEEEEESSS-------SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred EEEEeccccEEEEEEccc-------CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 567777888766542211 23466788877777777765556766666666 65544443
No 88
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=83.86 E-value=34 Score=31.18 Aligned_cols=206 Identities=13% Similarity=0.143 Sum_probs=88.9
Q ss_pred eEeecCCCCCeEEcc-CCCCCCCCceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877 92 FQDLPAPELKWEKMK-AAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169 (381)
Q Consensus 92 ~~~~~~~~~~W~~l~-~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 169 (381)
+..-.-...+|++++ +.+.|...+.+..+ ++.++++|.. ..+++=.-.-.+|+.+..-.. .-.......
T Consensus 83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~--gs~~~~~r~ 153 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETS--GSINDITRS 153 (302)
T ss_dssp EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S------EEEEEE-
T ss_pred EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCc--ceeEeEEEC
Confidence 344444566999985 23444444555444 4577777642 224444445668998754332 111222333
Q ss_pred eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCccceEeeeec
Q 016877 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSLAVKD 248 (381)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~ 248 (381)
-++.+++++. .+ +-....|+-...|+...... .|.-.++.. -++.|+++. ..+. .+. .+
T Consensus 154 ~dG~~vavs~-~G-------~~~~s~~~G~~~w~~~~r~~-~~riq~~gf~~~~~lw~~~-~Gg~-------~~~---s~ 213 (302)
T PF14870_consen 154 SDGRYVAVSS-RG-------NFYSSWDPGQTTWQPHNRNS-SRRIQSMGFSPDGNLWMLA-RGGQ-------IQF---SD 213 (302)
T ss_dssp TTS-EEEEET-TS-------SEEEEE-TT-SS-EEEE--S-SS-EEEEEE-TTS-EEEEE-TTTE-------EEE---EE
T ss_pred CCCcEEEEEC-cc-------cEEEEecCCCccceEEccCc-cceehhceecCCCCEEEEe-CCcE-------EEE---cc
Confidence 5666555553 22 22346788888998876443 344444444 456777764 2111 000 00
Q ss_pred CCccCCceEEe-cCCCCCCcc-eeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEe-CCCCCeEEcCC
Q 016877 249 GKPLEKEWRTE-IPIPRGGPH-RACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML-DDEMKWKVLPS 324 (381)
Q Consensus 249 ~~~~~~~W~~~-~~~p~~~~~-~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y-d~~~~W~~i~~ 324 (381)
......+|++. .+.+..... ..++.. ++.+++.||... +++= |..++|++.+.
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-----------------------l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-----------------------LLVSTDGGKTWQKDRV 270 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT------------------------EEEESSTTSS-EE-GG
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc-----------------------EEEeCCCCccceECcc
Confidence 11234577763 233334432 333333 578999888641 4443 37889998864
Q ss_pred C-CCCCCCcceEEEEECCEEEEEcccc
Q 016877 325 M-PKPDSHIEFAWVLVNNSIVIVGGTT 350 (381)
Q Consensus 325 ~-~~~~~~~~~~~~~~~~~l~v~GG~~ 350 (381)
. +.|-... .-....+++-+++|-..
T Consensus 271 ~~~~~~n~~-~i~f~~~~~gf~lG~~G 296 (302)
T PF14870_consen 271 GENVPSNLY-RIVFVNPDKGFVLGQDG 296 (302)
T ss_dssp GTTSSS----EEEEEETTEEEEE-STT
T ss_pred ccCCCCceE-EEEEcCCCceEEECCCc
Confidence 2 2222211 12244567999998643
No 89
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=83.79 E-value=18 Score=33.14 Aligned_cols=78 Identities=10% Similarity=0.163 Sum_probs=53.1
Q ss_pred cceEEEeCCCC-----eEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCc-EEeCCCCCCC
Q 016877 138 SHVDIYNFTDN-----TWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK-WQDLPPLPVP 211 (381)
Q Consensus 138 ~~~~~yd~~~~-----~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~ 211 (381)
..+..|+.... +.+.+.....+ ..-.+++.+++++.+.-| +.+..|+...++ +...+.+..+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~--g~V~ai~~~~~~lv~~~g----------~~l~v~~l~~~~~l~~~~~~~~~ 129 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK--GPVTAICSFNGRLVVAVG----------NKLYVYDLDNSKTLLKKAFYDSP 129 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES--S-EEEEEEETTEEEEEET----------TEEEEEEEETTSSEEEEEEE-BS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec--CcceEhhhhCCEEEEeec----------CEEEEEEccCcccchhhheecce
Confidence 56889998885 56655443332 234567778998666554 568888888877 8888766666
Q ss_pred CcccEEEEECCEEEEE
Q 016877 212 RYAPATQLWRGRLHVM 227 (381)
Q Consensus 212 r~~~~~~~~~~~lyv~ 227 (381)
-...++.+.++.|++-
T Consensus 130 ~~i~sl~~~~~~I~vg 145 (321)
T PF03178_consen 130 FYITSLSVFKNYILVG 145 (321)
T ss_dssp SSEEEEEEETTEEEEE
T ss_pred EEEEEEeccccEEEEE
Confidence 6777777888877655
No 90
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=82.84 E-value=27 Score=29.35 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=46.5
Q ss_pred eEEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCC----CCCCCCccceEEEEEeC-CEEEEEcCCCCCCCCCC
Q 016877 116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRF----DMPREMAHSHLGMVTDG-RYIYVVTGQYGPQCRGP 188 (381)
Q Consensus 116 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~----~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~ 188 (381)
+++...+++|+|-|. .+|+++..... -..+. .+|. .-..+..... +++|+|-|
T Consensus 11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~---~IDAa~~~~~~~~~yfFkg--------- 70 (194)
T cd00094 11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS---PVDAAFERPDTGKIYFFKG--------- 70 (194)
T ss_pred eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC---CccEEEEECCCCEEEEECC---------
Confidence 344456899999763 36666654111 11111 1222 1222333333 89999965
Q ss_pred cceEEEEECCCCcEE---eCC--CCCC-CCcccEEEEE--CCEEEEEccC
Q 016877 189 TAHTFVLDTETKKWQ---DLP--PLPV-PRYAPATQLW--RGRLHVMGGS 230 (381)
Q Consensus 189 ~~~~~~yd~~~~~W~---~~~--~~p~-~r~~~~~~~~--~~~lyv~GG~ 230 (381)
+..|+||..+..+. .+. ..|. +..--++... ++++|+|-|.
T Consensus 71 -~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~ 119 (194)
T cd00094 71 -DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD 119 (194)
T ss_pred -CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC
Confidence 56888887642221 111 1111 1112233333 5799999874
No 91
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=82.66 E-value=16 Score=28.31 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=53.5
Q ss_pred EECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCC-CCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEE-E
Q 016877 119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL-D 196 (381)
Q Consensus 119 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y-d 196 (381)
-++|-+|-..-. .......+.+||.++.+|+.+... ..........++.++|++-++.-..... ...-++|.. |
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLeD 78 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLED 78 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC--cceEEEEEeec
Confidence 357777766654 122235689999999999987532 1122355677888999988875433221 113567777 5
Q ss_pred CCCCcEEeCC
Q 016877 197 TETKKWQDLP 206 (381)
Q Consensus 197 ~~~~~W~~~~ 206 (381)
.++..|++..
T Consensus 79 ~~k~~Wsk~~ 88 (129)
T PF08268_consen 79 YEKQEWSKKH 88 (129)
T ss_pred cccceEEEEE
Confidence 6678898764
No 92
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=82.64 E-value=39 Score=30.95 Aligned_cols=95 Identities=8% Similarity=0.047 Sum_probs=42.9
Q ss_pred cceEeecCC-CCCeEEccCCCCCCCCceEE-EECC-EEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccce
Q 016877 90 ATFQDLPAP-ELKWEKMKAAPVPRLDGAAI-QIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSH 164 (381)
Q Consensus 90 ~~~~~~~~~-~~~W~~l~~~p~~r~~~~~~-~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~ 164 (381)
..+..|+.. ..+++.+...+.+..-..++ .-++ .+|+.. .. .+.+.+||+.++. .+.+..++.. ...
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~~~~~--~~~ 128 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQIIEGL--EGC 128 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceeeccCC--Ccc
Confidence 345555554 34565544333322212222 2234 566654 22 2346777775431 1122222221 122
Q ss_pred EEEEEe--CCEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877 165 LGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETK 200 (381)
Q Consensus 165 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~ 200 (381)
|.++.. ++.+|+..- ..+.+..||..+.
T Consensus 129 ~~~~~~p~g~~l~v~~~--------~~~~v~v~d~~~~ 158 (330)
T PRK11028 129 HSANIDPDNRTLWVPCL--------KEDRIRLFTLSDD 158 (330)
T ss_pred cEeEeCCCCCEEEEeeC--------CCCEEEEEEECCC
Confidence 334333 346766531 1366889998763
No 93
>PRK00178 tolB translocation protein TolB; Provisional
Probab=82.40 E-value=48 Score=31.79 Aligned_cols=104 Identities=9% Similarity=0.070 Sum_probs=57.9
Q ss_pred cceEeecCCCCCeEEccCCCCCCCCceEEEECC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEE
Q 016877 90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV 168 (381)
Q Consensus 90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~ 168 (381)
..++.+|..+.+-+++...+..-. .....-++ +|++..-.++ ..+++++|..+.+.+++...+.. .......
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~--~~~~~~s 295 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAI--DTEPFWG 295 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCC--cCCeEEC
Confidence 367888888777666654432111 11222244 5554432221 14699999999988877543321 1122222
Q ss_pred EeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC
Q 016877 169 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP 206 (381)
Q Consensus 169 ~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~ 206 (381)
-.+++|+......+ ..+++.+|..+.+++.+.
T Consensus 296 pDg~~i~f~s~~~g------~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 296 KDGRTLYFTSDRGG------KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred CCCCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence 23456665532222 357999999988887764
No 94
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=82.06 E-value=47 Score=31.50 Aligned_cols=62 Identities=15% Similarity=0.252 Sum_probs=37.1
Q ss_pred cceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC
Q 016877 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP 207 (381)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 207 (381)
..++++|+.+++-..+...+.. .......-.+..|++....++ ..+++.+|+.+...+.+..
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~--~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~ 275 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGM--NGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTN 275 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCC--ccceEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCC
Confidence 4589999998876666544331 122222223345665543222 3569999999888777754
No 95
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=81.88 E-value=43 Score=30.93 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=34.5
Q ss_pred EEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCC
Q 016877 165 LGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGE 232 (381)
Q Consensus 165 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 232 (381)
++++.. ++.+.+.||-+. ..+.++..+..|--.-+-..--.......+++.+++-|+..+
T Consensus 68 Favsl~P~~~l~aTGGgDD--------~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG 128 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGDD--------LAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSG 128 (399)
T ss_pred EEEEeCCCCceEEecCCCc--------eEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCc
Confidence 444444 567788887543 367788877764322111111122233457888888888766
No 96
>PRK05137 tolB translocation protein TolB; Provisional
Probab=81.50 E-value=52 Score=31.65 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=39.2
Q ss_pred cceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCC
Q 016877 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL 208 (381)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 208 (381)
..++++|+.+++.+.+...+.. .......-.+.+|++....++ ..++|.+|.++..-+.+...
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~--~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~~ 288 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGM--TFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTDS 288 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCc--ccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccCC
Confidence 4699999999988877655542 112222223445554433222 36799999998887776543
No 97
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.46 E-value=50 Score=31.44 Aligned_cols=98 Identities=10% Similarity=0.038 Sum_probs=48.4
Q ss_pred eEeecCCCCCeEEccC-C-C-CCC-C-CceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEE
Q 016877 92 FQDLPAPELKWEKMKA-A-P-VPR-L-DGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLG 166 (381)
Q Consensus 92 ~~~~~~~~~~W~~l~~-~-p-~~r-~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~ 166 (381)
+..-+-.-++|++... . . ..+ . ...+...++..|++|-. . .+..=+-.-.+|++++..+.........
T Consensus 112 IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~---G----~il~T~DgG~tW~~~~~~~~~p~~~~~i 184 (398)
T PLN00033 112 LLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP---A----ILLHTSDGGETWERIPLSPKLPGEPVLI 184 (398)
T ss_pred EEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc---e----EEEEEcCCCCCceECccccCCCCCceEE
Confidence 3333344568988531 1 1 111 1 23344457788887632 1 1222222346899876432110122222
Q ss_pred EEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeC
Q 016877 167 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL 205 (381)
Q Consensus 167 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~ 205 (381)
.+.-++.++++|. ...+++=+-.-.+|+.+
T Consensus 185 ~~~~~~~~~ivg~---------~G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 185 KATGPKSAEMVTD---------EGAIYVTSNAGRNWKAA 214 (398)
T ss_pred EEECCCceEEEec---------cceEEEECCCCCCceEc
Confidence 3334456788763 12355555556789887
No 98
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=81.21 E-value=58 Score=31.98 Aligned_cols=27 Identities=7% Similarity=-0.100 Sum_probs=18.8
Q ss_pred hheeEc-CEEEEecCCCCCcccceeeeeeCCCce
Q 016877 28 GFALVA-DFFWASSSKFTSSYLNIASNWSPYHNS 60 (381)
Q Consensus 28 ~~~~~~-~~ly~~GG~~~~~~~~~~~~~d~~~~~ 60 (381)
++++.+ +.+|+... + ..+.++|.++++
T Consensus 104 g~~~~~~~~V~v~~~-~-----g~v~AlD~~TG~ 131 (488)
T cd00216 104 GVAYWDPRKVFFGTF-D-----GRLVALDAETGK 131 (488)
T ss_pred CcEEccCCeEEEecC-C-----CeEEEEECCCCC
Confidence 345566 88887542 2 377899999888
No 99
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=80.98 E-value=39 Score=29.86 Aligned_cols=178 Identities=14% Similarity=0.071 Sum_probs=94.1
Q ss_pred EcCEEEEecCCCCCcccceeeeee----C-CCce----eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCCC
Q 016877 32 VADFFWASSSKFTSSYLNIASNWS----P-YHNS----IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELK 101 (381)
Q Consensus 32 ~~~~ly~~GG~~~~~~~~~~~~~d----~-~~~~----~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 101 (381)
-.+++|++.+..+. .+..|. . ..++ ..|| .+-.+-|.++..+ .+-... -+..+.+||..+++
T Consensus 29 ~~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp--~~~~GtG~vVYngslYY~~~--~s~~IvkydL~t~~ 100 (250)
T PF02191_consen 29 DSEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLP--YPWQGTGHVVYNGSLYYNKY--NSRNIVKYDLTTRS 100 (250)
T ss_pred CCCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEe--ceeccCCeEEECCcEEEEec--CCceEEEEECcCCc
Confidence 46789999986654 333331 1 1111 3444 3334455555544 333333 44578999999886
Q ss_pred eEEccCCCCCCCC------------ceEEEECCEEEEEecCCCCCCcccceEEEeCCC----CeEecCCCCCCCCccceE
Q 016877 102 WEKMKAAPVPRLD------------GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTD----NTWGGRFDMPREMAHSHL 165 (381)
Q Consensus 102 W~~l~~~p~~r~~------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~~~r~~~ 165 (381)
-..-..+|.+... .-.++-++-|+|+-.....+... .+-..|+.+ .+|.. ..+. +....
T Consensus 101 v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~i-vvskld~~tL~v~~tw~T--~~~k--~~~~n 175 (250)
T PF02191_consen 101 VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNI-VVSKLDPETLSVEQTWNT--SYPK--RSAGN 175 (250)
T ss_pred EEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcE-EEEeeCcccCceEEEEEe--ccCc--hhhcc
Confidence 4422223322221 22333455677776554333211 255667664 46775 2333 22333
Q ss_pred EEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC-CCCCCCcccEEEEE---CCEEEEE
Q 016877 166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLW---RGRLHVM 227 (381)
Q Consensus 166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~lyv~ 227 (381)
+-++-|.+|++-..+... ..-.+.||+.+++=..+. +++.+-..+++..+ +.+||+.
T Consensus 176 -aFmvCGvLY~~~s~~~~~----~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 176 -AFMVCGVLYATDSYDTRD----TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred -eeeEeeEEEEEEECCCCC----cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEE
Confidence 334456799986554322 344678999988755433 23333344455544 5779988
No 100
>PLN00181 protein SPA1-RELATED; Provisional
Probab=80.72 E-value=79 Score=33.22 Aligned_cols=62 Identities=5% Similarity=0.064 Sum_probs=32.8
Q ss_pred CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe--CCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877 122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTET 199 (381)
Q Consensus 122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~ 199 (381)
+..++.|+.+ ..+.++|..+++-.. .+... ...-.+++.. ++.+++.|+.++ .+..||..+
T Consensus 545 ~~~las~~~D------g~v~lWd~~~~~~~~--~~~~H-~~~V~~l~~~p~~~~~L~Sgs~Dg--------~v~iWd~~~ 607 (793)
T PLN00181 545 KSQVASSNFE------GVVQVWDVARSQLVT--EMKEH-EKRVWSIDYSSADPTLLASGSDDG--------SVKLWSINQ 607 (793)
T ss_pred CCEEEEEeCC------CeEEEEECCCCeEEE--EecCC-CCCEEEEEEcCCCCCEEEEEcCCC--------EEEEEECCC
Confidence 3455666654 247778887654332 12110 1112334443 456777777544 367788765
Q ss_pred C
Q 016877 200 K 200 (381)
Q Consensus 200 ~ 200 (381)
.
T Consensus 608 ~ 608 (793)
T PLN00181 608 G 608 (793)
T ss_pred C
Confidence 4
No 101
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=79.75 E-value=56 Score=30.96 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=33.1
Q ss_pred ceeEeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEee
Q 016877 309 DVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNA 379 (381)
Q Consensus 309 ~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~ 379 (381)
++|.+| .+..++.+..-. ..... .....+++.+++....... ..++.+|++++.++.+.
T Consensus 303 ~iy~~d~~~~~~~~l~~~~--~~~~~-~~~spdg~~i~~~~~~~~~---------~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 303 QIYMMDADGGEVRRLTFRG--GYNAS-PSWSPDGDLIAFVHREGGG---------FNIAVMDLDGGGERVLT 362 (417)
T ss_pred eEEEEECCCCCEEEeecCC--CCccC-eEECCCCCEEEEEEccCCc---------eEEEEEeCCCCCeEEcc
Confidence 588888 666666654211 11111 1234566666665543311 25888998887776553
No 102
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=79.27 E-value=40 Score=28.89 Aligned_cols=64 Identities=9% Similarity=0.067 Sum_probs=31.5
Q ss_pred CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET 199 (381)
Q Consensus 121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~ 199 (381)
++..+++++.+ ..+.+||..+++-... +... ...-.++... ++++++.++.+ ..+..||+.+
T Consensus 62 ~~~~l~~~~~~------~~i~i~~~~~~~~~~~--~~~~-~~~i~~~~~~~~~~~~~~~~~~--------~~i~~~~~~~ 124 (289)
T cd00200 62 DGTYLASGSSD------KTIRLWDLETGECVRT--LTGH-TSYVSSVAFSPDGRILSSSSRD--------KTIKVWDVET 124 (289)
T ss_pred CCCEEEEEcCC------CeEEEEEcCcccceEE--Eecc-CCcEEEEEEcCCCCEEEEecCC--------CeEEEEECCC
Confidence 34466666643 3578888876532221 1111 0112223333 34566655522 4578898875
Q ss_pred Cc
Q 016877 200 KK 201 (381)
Q Consensus 200 ~~ 201 (381)
.+
T Consensus 125 ~~ 126 (289)
T cd00200 125 GK 126 (289)
T ss_pred cE
Confidence 43
No 103
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=79.26 E-value=55 Score=30.56 Aligned_cols=117 Identities=8% Similarity=0.021 Sum_probs=63.7
Q ss_pred cCEEEEecCCCCCcccceeeeeeCCCce--eeecC-CCCCCCceeEEeee-cccccc-------cccCcceEeecCCCCC
Q 016877 33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPN-NGPQKGENIGVKTK-KDVVPK-------RILPATFQDLPAPELK 101 (381)
Q Consensus 33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~-~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~ 101 (381)
...+|+.-...-... +.+..+|..+.+ ..++. ..||.. ++.-++ +|.... ......+..+|..+.+
T Consensus 12 ~~~v~V~d~~~~~~~-~~v~ViD~~~~~v~g~i~~G~~P~~~--~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~ 88 (352)
T TIGR02658 12 ARRVYVLDPGHFAAT-TQVYTIDGEAGRVLGMTDGGFLPNPV--VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL 88 (352)
T ss_pred CCEEEEECCcccccC-ceEEEEECCCCEEEEEEEccCCCcee--ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence 456788766432223 789999999988 44554 444431 222222 222222 1244578899999887
Q ss_pred eEE-ccCCCCCCCC------ceEEEECC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC
Q 016877 102 WEK-MKAAPVPRLD------GAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP 157 (381)
Q Consensus 102 W~~-l~~~p~~r~~------~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~ 157 (381)
=.. ++..+.||.. ..+..-++ .+||.- . ...+.+-+.|..+++-...-+.|
T Consensus 89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~----~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-F----SPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred EEeEEccCCCchhhccCccceEEECCCCCEEEEec-C----CCCCEEEEEECCCCcEEEEEeCC
Confidence 542 3322344522 11222244 566652 2 22356889999988766533333
No 104
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=78.97 E-value=38 Score=31.26 Aligned_cols=179 Identities=14% Similarity=0.118 Sum_probs=75.2
Q ss_pred ccceeeeeeCCCce----eeecCCCCCC-------CceeEEeeecccccccccCcceEeecCCCCCeEEccCCCCCCCCc
Q 016877 47 YLNIASNWSPYHNS----IILPNNGPQK-------GENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDG 115 (381)
Q Consensus 47 ~~~~~~~~d~~~~~----~~~p~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~r~~~ 115 (381)
...-++.||.++-+ +.+|+ .||. .+.+..-++.-......-...+..-|...++-.. .++.|-+.+
T Consensus 65 RtDvv~~~D~~TL~~~~EI~iP~-k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~--ei~~PGC~~ 141 (342)
T PF06433_consen 65 RTDVVEIWDTQTLSPTGEIEIPP-KPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG--EIDTPGCWL 141 (342)
T ss_dssp EEEEEEEEETTTTEEEEEEEETT-S-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE--EEEGTSEEE
T ss_pred ceeEEEEEecCcCcccceEecCC-cchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceee--eecCCCEEE
Confidence 34568999999987 56765 1222 1122111111111111222345566766666433 223332222
Q ss_pred eEEEECCEEEEEec----------CCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEE--cCCCCC
Q 016877 116 AAIQIKNLLYVFAG----------YGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVV--TGQYGP 183 (381)
Q Consensus 116 ~~~~~~~~iyv~GG----------~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~--GG~~~~ 183 (381)
..-.-+..++.+.| .++... ......|+++.+-.-.-+.... .....-.+.++|++|-+ +|..
T Consensus 142 iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~--~~~~~~F~Sy~G~v~~~dlsg~~-- 216 (342)
T PF06433_consen 142 IYPSGNRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSR--DGGRLYFVSYEGNVYSADLSGDS-- 216 (342)
T ss_dssp EEEEETTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEET--TTTEEEEEBTTSEEEEEEETTSS--
T ss_pred EEecCCCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceEC--CCCeEEEEecCCEEEEEeccCCc--
Confidence 22222233333333 222222 3334677776553222211111 12234457788888874 4421
Q ss_pred CCCCCcceEEEEECCC-----CcEEeCCCCCCCCcccEEEE--ECCEEEEEc--cCCCCCCCCCccceEee
Q 016877 184 QCRGPTAHTFVLDTET-----KKWQDLPPLPVPRYAPATQL--WRGRLHVMG--GSGENRYTPEVDHWSLA 245 (381)
Q Consensus 184 ~~~~~~~~~~~yd~~~-----~~W~~~~~~p~~r~~~~~~~--~~~~lyv~G--G~~~~~~~~~~~~~~~~ 245 (381)
..-...+...+ ..|..-. . ..++. -.++|||+- |.....-++..+.|.++
T Consensus 217 -----~~~~~~~~~~t~~e~~~~WrPGG-----~--Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 217 -----AKFGKPWSLLTDAEKADGWRPGG-----W--QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp -----EEEEEEEESS-HHHHHTTEEE-S-----S--S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred -----ccccCcccccCccccccCcCCcc-----e--eeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 12222333322 3454322 1 22233 367888874 33333446777888764
No 105
>PTZ00421 coronin; Provisional
Probab=78.55 E-value=71 Score=31.44 Aligned_cols=101 Identities=8% Similarity=-0.019 Sum_probs=47.2
Q ss_pred CCEEEEEecCCCCCCcccceEEEeCCCCeEe-----cCCCCCCCCccceEEEEEe--CCEEEEEcCCCCCCCCCCcceEE
Q 016877 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWG-----GRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTF 193 (381)
Q Consensus 121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-----~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 193 (381)
++.+++.|+.++ .+.+||..++... .+..+... .+.-.++... ++.+++.||.++ .+.
T Consensus 87 d~~~LaSgS~Dg------tIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~Dg--------tVr 151 (493)
T PTZ00421 87 DPQKLFTASEDG------TIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGADM--------VVN 151 (493)
T ss_pred CCCEEEEEeCCC------EEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCCC--------EEE
Confidence 456777777653 4667777654221 11111111 1111223333 235677776543 477
Q ss_pred EEECCCCcEEeCCCCC-CCCcccEEE-EECCEEEEEccCCCCCCCCCccceE
Q 016877 194 VLDTETKKWQDLPPLP-VPRYAPATQ-LWRGRLHVMGGSGENRYTPEVDHWS 243 (381)
Q Consensus 194 ~yd~~~~~W~~~~~~p-~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~ 243 (381)
.||.++.+-.. .+. ....-.++. ..++.+++.|+.++ .+..|+
T Consensus 152 IWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~Dg-----~IrIwD 196 (493)
T PTZ00421 152 VWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKDK-----KLNIID 196 (493)
T ss_pred EEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCCC-----EEEEEE
Confidence 88888764221 111 111112222 23667777776543 355565
No 106
>PRK04792 tolB translocation protein TolB; Provisional
Probab=78.52 E-value=67 Score=31.12 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=39.1
Q ss_pred cceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC
Q 016877 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP 207 (381)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 207 (381)
..++++|+.+++-+.+...+.. .......-.+.+|++....++ ..+++.+|.++.+.+.+..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~--~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGI--NGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITR 303 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCC--cCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECcc
Confidence 4699999998877776655431 122222234455665543222 3679999999998887754
No 107
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=78.24 E-value=67 Score=30.94 Aligned_cols=72 Identities=8% Similarity=0.147 Sum_probs=42.8
Q ss_pred EEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEEC
Q 016877 118 IQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDT 197 (381)
Q Consensus 118 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~ 197 (381)
..++++||.+.-.++-+. ++.-|+..+--++-.++..--+| -+..+++=.+|- ...++|.|||
T Consensus 232 mIV~~RvYFlsD~eG~Gn----lYSvdldGkDlrrHTnFtdYY~R----~~nsDGkrIvFq---------~~GdIylydP 294 (668)
T COG4946 232 MIVGERVYFLSDHEGVGN----LYSVDLDGKDLRRHTNFTDYYPR----NANSDGKRIVFQ---------NAGDIYLYDP 294 (668)
T ss_pred eEEcceEEEEecccCccc----eEEeccCCchhhhcCCchhcccc----ccCCCCcEEEEe---------cCCcEEEeCC
Confidence 456889999887766443 45556665544444444331122 223445444442 1356999999
Q ss_pred CCCcEEeCC
Q 016877 198 ETKKWQDLP 206 (381)
Q Consensus 198 ~~~~W~~~~ 206 (381)
+++.-+++.
T Consensus 295 ~td~lekld 303 (668)
T COG4946 295 ETDSLEKLD 303 (668)
T ss_pred CcCcceeee
Confidence 999888775
No 108
>PRK05137 tolB translocation protein TolB; Provisional
Probab=77.95 E-value=68 Score=30.86 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=33.7
Q ss_pred ccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCC
Q 016877 137 HSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV 210 (381)
Q Consensus 137 ~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 210 (381)
...+++.|.....=+.+..-..+ -......-.+.+|+...-..+ ...++.+|+.+.+.+.+...+.
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~--v~~p~wSpDG~~lay~s~~~g------~~~i~~~dl~~g~~~~l~~~~g 246 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSL--VLTPRFSPNRQEITYMSYANG------RPRVYLLDLETGQRELVGNFPG 246 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCC--eEeeEECCCCCEEEEEEecCC------CCEEEEEECCCCcEEEeecCCC
Confidence 35688888765433333221111 111122223344443321111 2679999999988877765543
No 109
>PRK04922 tolB translocation protein TolB; Provisional
Probab=77.77 E-value=69 Score=30.82 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=37.7
Q ss_pred cceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC
Q 016877 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP 207 (381)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 207 (381)
..++++|+.+++-+.+...+.. .......-.+.+|++....++ ..+++.+|+.+..-+.+..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~--~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~ 289 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGI--NGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTN 289 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCC--ccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECcc
Confidence 4589999998887777655431 112222223455655432222 2579999999887766643
No 110
>PRK04922 tolB translocation protein TolB; Provisional
Probab=77.68 E-value=69 Score=30.81 Aligned_cols=104 Identities=8% Similarity=0.035 Sum_probs=57.1
Q ss_pred cceEeecCCCCCeEEccCCCCCCCCceEEEECC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEE
Q 016877 90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV 168 (381)
Q Consensus 90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~ 168 (381)
..++.+|..+.+-+.+...+..-. .....-++ +|++....++ ..+++++|+.+++-+++..... .....+..
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~~~--~~~~~~~s 300 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNHFG--IDTEPTWA 300 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccCCC--CccceEEC
Confidence 357788888777766665442211 11222244 5655443322 2469999999888776644322 11122222
Q ss_pred EeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC
Q 016877 169 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP 206 (381)
Q Consensus 169 ~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~ 206 (381)
-.+.+|+......+ ..+++.+|..+.+.+.+.
T Consensus 301 pDG~~l~f~sd~~g------~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 301 PDGKSIYFTSDRGG------RPQIYRVAASGGSAERLT 332 (433)
T ss_pred CCCCEEEEEECCCC------CceEEEEECCCCCeEEee
Confidence 23445554432222 257999999888877764
No 111
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=77.38 E-value=38 Score=33.64 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=30.0
Q ss_pred ceeEeC-C--CCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCc
Q 016877 309 DVYMLD-D--EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV 374 (381)
Q Consensus 309 ~v~~yd-~--~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~ 374 (381)
.++.+| . +..|+.-..-+........+-++.++.||+-....+.. ....+..||.++++
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~-------~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFG-------VRGYVTAYDAKTGK 192 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccC-------CCcEEEEEECCCCc
Confidence 388888 4 45687532211111112233467788877753221111 12257888887765
No 112
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=76.88 E-value=70 Score=30.43 Aligned_cols=198 Identities=15% Similarity=0.111 Sum_probs=93.1
Q ss_pred ccceEEEeCCCCeEe--cCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCC-----cEEeCCCCC
Q 016877 137 HSHVDIYNFTDNTWG--GRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK-----KWQDLPPLP 209 (381)
Q Consensus 137 ~~~~~~yd~~~~~W~--~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~-----~W~~~~~~p 209 (381)
-..++++...+..-+ .+-.-+.+...........+++..++.-..+. ..++++..|.... .|..+.+.-
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~----~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT----SESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS----SEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc----cCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 346888888877544 22222221111222223334443333211111 1378999999875 788876422
Q ss_pred CCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCC-ccCCceE-EecCCCCCCcceeEEEeCCEEEEEccCCCC
Q 016877 210 VPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK-PLEKEWR-TEIPIPRGGPHRACVVVDDRLLVIGGQEGD 287 (381)
Q Consensus 210 ~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~-~~~~~W~-~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~ 287 (381)
. -....+...++.+|+....+. ..+.+.....+ +....|. .+.+-.....-..+...++.|++.-=.+.
T Consensus 277 ~-~~~~~v~~~~~~~yi~Tn~~a-------~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~- 347 (414)
T PF02897_consen 277 D-GVEYYVDHHGDRLYILTNDDA-------PNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG- 347 (414)
T ss_dssp S-S-EEEEEEETTEEEEEE-TT--------TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT-
T ss_pred C-ceEEEEEccCCEEEEeeCCCC-------CCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC-
Confidence 2 222334456899999865322 12222222222 2223566 44443332233355667888888754332
Q ss_pred CCCCCCCCccccccCceeecCceeEeCCCCCeEEcC-CCCCCCCCcceEEEEE---CCE-EEEEcccccccCCceeeeee
Q 016877 288 FMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLP-SMPKPDSHIEFAWVLV---NNS-IVIVGGTTEKHPTTKKMVLV 362 (381)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~i~-~~~~~~~~~~~~~~~~---~~~-l~v~GG~~~~~~~~~~~~~~ 362 (381)
...+..++....|.... ++|. .. .+..... .+. .|.+.+....
T Consensus 348 -------------------~~~l~v~~~~~~~~~~~~~~p~--~g-~v~~~~~~~~~~~~~~~~ss~~~P---------- 395 (414)
T PF02897_consen 348 -------------------SSRLRVYDLDDGKESREIPLPE--AG-SVSGVSGDFDSDELRFSYSSFTTP---------- 395 (414)
T ss_dssp -------------------EEEEEEEETT-TEEEEEEESSS--SS-EEEEEES-TT-SEEEEEEEETTEE----------
T ss_pred -------------------ccEEEEEECCCCcEEeeecCCc--ce-EEeccCCCCCCCEEEEEEeCCCCC----------
Confidence 23477776222443332 2222 11 1111111 233 3444444422
Q ss_pred cceEEEEcCCCceEEee
Q 016877 363 GEIFQFNLNTLVAVLNA 379 (381)
Q Consensus 363 ~~v~~yd~~~~~W~~i~ 379 (381)
..++.||+++++.+.+.
T Consensus 396 ~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 396 PTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEEETTTTCEEEEE
T ss_pred CEEEEEECCCCCEEEEE
Confidence 36999999999987764
No 113
>PRK04792 tolB translocation protein TolB; Provisional
Probab=75.76 E-value=80 Score=30.59 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=58.9
Q ss_pred cceEeecCCCCCeEEccCCCCCCCCceEEEECC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEE
Q 016877 90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV 168 (381)
Q Consensus 90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~ 168 (381)
..++.+|..+.+-+.+...+..-. .....-++ +|++....++ ..+++.+|+.+++.+++..... .....+..
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~--~~~~p~wS 314 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRA--IDTEPSWH 314 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCC--CccceEEC
Confidence 367888887777666655432211 11222244 5665543332 2469999999998887754322 11122222
Q ss_pred EeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC
Q 016877 169 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP 206 (381)
Q Consensus 169 ~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~ 206 (381)
-.+.+|++.....+ ..+++.+|.++.+++.+.
T Consensus 315 pDG~~I~f~s~~~g------~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 315 PDGKSLIFTSERGG------KPQIYRVNLASGKVSRLT 346 (448)
T ss_pred CCCCEEEEEECCCC------CceEEEEECCCCCEEEEe
Confidence 23445555432222 357999999999888764
No 114
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=75.29 E-value=66 Score=29.40 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=44.2
Q ss_pred EEEEEecCCCCCCcccceEEEeCCC-CeEecCCCCCCCCccceEEEEE--eCCEEEEEcCCCCCCCCCCcceEEEEECC-
Q 016877 123 LLYVFAGYGSIDYVHSHVDIYNFTD-NTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTE- 198 (381)
Q Consensus 123 ~iyv~GG~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~- 198 (381)
++|+....+ ..+.+||..+ .+++.+..++.. ...+.++. .++.+|+.+.. ...+..|+..
T Consensus 3 ~~y~~~~~~------~~I~~~~~~~~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~--------~~~i~~~~~~~ 66 (330)
T PRK11028 3 IVYIASPES------QQIHVWNLNHEGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRP--------EFRVLSYRIAD 66 (330)
T ss_pred EEEEEcCCC------CCEEEEEECCCCceeeeeEEecC--CCCccEEECCCCCEEEEEECC--------CCcEEEEEECC
Confidence 577775432 3477778754 466665544432 11222333 34567775431 2446666665
Q ss_pred CCcEEeCCCCCCCCcccEEEE-ECC-EEEEEc
Q 016877 199 TKKWQDLPPLPVPRYAPATQL-WRG-RLHVMG 228 (381)
Q Consensus 199 ~~~W~~~~~~p~~r~~~~~~~-~~~-~lyv~G 228 (381)
+.+++.+...+.+..-+.++. -++ .+|+..
T Consensus 67 ~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~ 98 (330)
T PRK11028 67 DGALTFAAESPLPGSPTHISTDHQGRFLFSAS 98 (330)
T ss_pred CCceEEeeeecCCCCceEEEECCCCCEEEEEE
Confidence 456766554333222222332 234 466653
No 115
>PRK00178 tolB translocation protein TolB; Provisional
Probab=75.28 E-value=79 Score=30.27 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=37.9
Q ss_pred cceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC
Q 016877 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP 207 (381)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 207 (381)
..++++|+.+++-+.+...+.. .......-.+++|++..-.++ ..+++.+|.++...+.+..
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~--~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 284 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGL--NGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTN 284 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCC--cCCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEccc
Confidence 3699999999888777654431 111222223445654432222 2579999999998887754
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.71 E-value=58 Score=28.51 Aligned_cols=16 Identities=6% Similarity=-0.276 Sum_probs=9.4
Q ss_pred eEEEEcCC-CceEEeec
Q 016877 365 IFQFNLNT-LVAVLNAM 380 (381)
Q Consensus 365 v~~yd~~~-~~W~~i~~ 380 (381)
+.++.+.. ++|.+++.
T Consensus 280 vtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 280 VTLWKENVDGKWEEVGE 296 (299)
T ss_pred EEEEEeCCCCcEEEccc
Confidence 34444433 58998875
No 117
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=74.71 E-value=73 Score=31.68 Aligned_cols=95 Identities=18% Similarity=0.294 Sum_probs=54.4
Q ss_pred EEEECCEEEEEecCCCCCCcccceEEEeCCCC--eEecCCCCCCCCc------cceEEEEEeCCEEEEEcCCCCCCCCCC
Q 016877 117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREMA------HSHLGMVTDGRYIYVVTGQYGPQCRGP 188 (381)
Q Consensus 117 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~------r~~~~~~~~~~~iyv~GG~~~~~~~~~ 188 (381)
-++.++.||+.... ..++++|.++. .|+.-...+.... ....+.++.+++||+...
T Consensus 65 Pvv~~g~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--------- 128 (527)
T TIGR03075 65 PLVVDGVMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--------- 128 (527)
T ss_pred CEEECCEEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC---------
Confidence 35668999986532 24889998876 4886433321100 012235677888886432
Q ss_pred cceEEEEECCCCc--EEeCC-CCCCC-CcccEEEEECCEEEEE
Q 016877 189 TAHTFVLDTETKK--WQDLP-PLPVP-RYAPATQLWRGRLHVM 227 (381)
Q Consensus 189 ~~~~~~yd~~~~~--W~~~~-~~p~~-r~~~~~~~~~~~lyv~ 227 (381)
...++.+|.+|.+ |+.-. ..... ....+-++.+++||+-
T Consensus 129 dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg 171 (527)
T TIGR03075 129 DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITG 171 (527)
T ss_pred CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEe
Confidence 2458999998765 76532 22111 1223344678887775
No 118
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=73.59 E-value=96 Score=30.46 Aligned_cols=115 Identities=14% Similarity=0.152 Sum_probs=60.0
Q ss_pred hheeEcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCC--C-----CCceeEEee-e-cccccccccCcceEeec
Q 016877 28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGP--Q-----KGENIGVKT-K-KDVVPKRILPATFQDLP 96 (381)
Q Consensus 28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~--~-----~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 96 (381)
.-++.++.+|+.... ..+.++|..+++ .......+ + ...+++..+ + ++... ....++.+|
T Consensus 56 sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~---~~g~v~AlD 126 (488)
T cd00216 56 TPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT---FDGRLVALD 126 (488)
T ss_pred CCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec---CCCeEEEEE
Confidence 456779999987542 368899999888 33322111 1 111222222 2 33222 234678888
Q ss_pred CCCC--CeEEccCCCC-CC--CCceEEEECCEEEEEecCCCCC---CcccceEEEeCCCCe--Eec
Q 016877 97 APEL--KWEKMKAAPV-PR--LDGAAIQIKNLLYVFAGYGSID---YVHSHVDIYNFTDNT--WGG 152 (381)
Q Consensus 97 ~~~~--~W~~l~~~p~-~r--~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~~yd~~~~~--W~~ 152 (381)
..+. .|+.-...+. .. ...+.++.++.+|+ |..+... .....++++|.++.+ |+.
T Consensus 127 ~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 127 AETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEe
Confidence 8765 6876432221 11 12233455666664 4322111 123468999998764 875
No 119
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=73.17 E-value=64 Score=28.25 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=62.1
Q ss_pred CeEecCCCCCC---CCccce-EEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCE
Q 016877 148 NTWGGRFDMPR---EMAHSH-LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGR 223 (381)
Q Consensus 148 ~~W~~~~~~~~---~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 223 (381)
..|+...++.. +.+.-+ ..+.-..+.|+..|| -..++..|.++.+-+..= .-..-+-|+++.-+..
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG---------D~~~y~~dlE~G~i~r~~-rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG---------DGVIYQVDLEDGRIQREY-RGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecC---------CeEEEEEEecCCEEEEEE-cCCcceeeeeeecccC
Confidence 35888766643 222222 233335677888887 356899999999876642 2234466666653222
Q ss_pred -EEEEccCCCCCCCCCccceEeeeecCCccCCceEEe-c-----CCCCCCc--ceeEEEeCCEEEEEccCC
Q 016877 224 -LHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE-I-----PIPRGGP--HRACVVVDDRLLVIGGQE 285 (381)
Q Consensus 224 -lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-~-----~~p~~~~--~~~~~~~~~~l~v~GG~~ 285 (381)
=.+.|+-++ .+..|+. .+.+=..+ . .+-|+.. ...+...+..-+++||-.
T Consensus 169 ~qilsG~EDG-----tvRvWd~-------kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp 227 (325)
T KOG0649|consen 169 GQILSGAEDG-----TVRVWDT-------KTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP 227 (325)
T ss_pred cceeecCCCc-----cEEEEec-------cccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC
Confidence 233444332 5677764 23333222 1 1222222 225666677777787754
No 120
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=72.69 E-value=86 Score=29.52 Aligned_cols=102 Identities=7% Similarity=0.022 Sum_probs=58.3
Q ss_pred CCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC-----CCCC--CcccEEEE
Q 016877 147 DNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP-----LPVP--RYAPATQL 219 (381)
Q Consensus 147 ~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~-----~p~~--r~~~~~~~ 219 (381)
.+.|+.+..+. ...-.++.++|++|++.- ...++.+|.+- +=+++.+ +... ....-.+.
T Consensus 189 ~~~Wt~l~~~~----~~~~DIi~~kGkfYAvD~---------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVE 254 (373)
T PLN03215 189 GNVLKALKQMG----YHFSDIIVHKGQTYALDS---------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVE 254 (373)
T ss_pred CCeeeEccCCC----ceeeEEEEECCEEEEEcC---------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEE
Confidence 48999996533 234568899999999831 23466666432 1122221 1111 12233556
Q ss_pred ECCEEEEEccCCCCCCC-------CCccceEeeeecCCccCCceEEecCC
Q 016877 220 WRGRLHVMGGSGENRYT-------PEVDHWSLAVKDGKPLEKEWRTEIPI 262 (381)
Q Consensus 220 ~~~~lyv~GG~~~~~~~-------~~~~~~~~~~~~~~~~~~~W~~~~~~ 262 (381)
..|+|+++......... .......+.++..|....+|.++..+
T Consensus 255 s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sL 304 (373)
T PLN03215 255 CCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTL 304 (373)
T ss_pred ECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEeccc
Confidence 67889999874221100 01123556777778888999987665
No 121
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=72.54 E-value=72 Score=30.00 Aligned_cols=104 Identities=8% Similarity=0.021 Sum_probs=55.6
Q ss_pred CCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeCCCCCeEEcCCC-----CC
Q 016877 253 EKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSM-----PK 327 (381)
Q Consensus 253 ~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~i~~~-----~~ 327 (381)
.+.|+.+.. .... ..-++.++|++|++.-. .+++..+....-+++.+. ..
T Consensus 189 ~~~Wt~l~~-~~~~-~~DIi~~kGkfYAvD~~-----------------------G~l~~i~~~l~i~~v~~~i~~~~~~ 243 (373)
T PLN03215 189 GNVLKALKQ-MGYH-FSDIIVHKGQTYALDSI-----------------------GIVYWINSDLEFSRFGTSLDENITD 243 (373)
T ss_pred CCeeeEccC-CCce-eeEEEEECCEEEEEcCC-----------------------CeEEEEecCCceeeecceecccccC
Confidence 378998853 2222 44788999999998321 125555411111222211 00
Q ss_pred CCCCcceEEEEECCEEEEEcccccccCCc-------eeeeeecceEEEEcCCCceEEeecC
Q 016877 328 PDSHIEFAWVLVNNSIVIVGGTTEKHPTT-------KKMVLVGEIFQFNLNTLVAVLNAML 381 (381)
Q Consensus 328 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~-------~~~~~~~~v~~yd~~~~~W~~i~~l 381 (381)
........++...|+|+++.......... ......=.|+..|.+..+|.++..|
T Consensus 244 g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sL 304 (373)
T PLN03215 244 GCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTL 304 (373)
T ss_pred CcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEeccc
Confidence 11111233677889999998753211000 0000122577889888999998765
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=72.43 E-value=92 Score=29.77 Aligned_cols=123 Identities=7% Similarity=0.054 Sum_probs=60.0
Q ss_pred cceeeeeeCCCce--eeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEcc-CCCCCCCCceEEEECCEE
Q 016877 48 LNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMK-AAPVPRLDGAAIQIKNLL 124 (381)
Q Consensus 48 ~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~-~~p~~r~~~~~~~~~~~i 124 (381)
...+-++|++|++ .+.....+..+++...+...+....+.-...+......... +.. ..-.|-.-++.+..+.--
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~--~~~q~~v~Pg~v~al~s~n~G~ 94 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKD--QVVQYIVLPGPVHALASSNLGY 94 (476)
T ss_pred CcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchh--hhhhhcccccceeeeecCCCce
Confidence 3457889999988 55555444445555555544444433222222211111000 000 111233335566666667
Q ss_pred EEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccce--EE-EEEeCCEEEEEcCCCC
Q 016877 125 YVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSH--LG-MVTDGRYIYVVTGQYG 182 (381)
Q Consensus 125 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~--~~-~~~~~~~iyv~GG~~~ 182 (381)
|++||.. ...++++...++.--.+-. +++. .+ ....++..++.||.|+
T Consensus 95 ~l~ag~i-----~g~lYlWelssG~LL~v~~-----aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 95 FLLAGTI-----SGNLYLWELSSGILLNVLS-----AHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred EEEeecc-----cCcEEEEEeccccHHHHHH-----hhccceeEEEEeCCCcEEEecCCCc
Confidence 7777732 1347777777764332211 1111 11 2235677888888776
No 123
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=70.70 E-value=1e+02 Score=29.45 Aligned_cols=77 Identities=21% Similarity=0.133 Sum_probs=47.8
Q ss_pred ceEEEECCEEEEE---ecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcce
Q 016877 115 GAAIQIKNLLYVF---AGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAH 191 (381)
Q Consensus 115 ~~~~~~~~~iyv~---GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 191 (381)
++....++++-|+ |-+..++...++++++|-..+---++..+... .| -.++-..++..|++-= +..+-
T Consensus 380 f~~deyngylRvaTt~~dW~~~de~~N~vYilDe~lnvvGkltGl~~g-ER-IYAvRf~gdv~yiVTf-------rqtDP 450 (603)
T COG4880 380 FDGDEYNGYLRVATTLSDWTSEDEPVNAVYILDENLNVVGKLTGLAPG-ER-IYAVRFVGDVLYIVTF-------RQTDP 450 (603)
T ss_pred ccCcccceEEEEEeeecccccCCCccceeEEEcCCCcEEEEEeccCCC-ce-EEEEEEeCceEEEEEE-------eccCc
Confidence 4444455555543 33444555678899999988877777666543 23 3456678888998741 22455
Q ss_pred EEEEECCCC
Q 016877 192 TFVLDTETK 200 (381)
Q Consensus 192 ~~~yd~~~~ 200 (381)
++..|...-
T Consensus 451 lfviDlsNP 459 (603)
T COG4880 451 LFVIDLSNP 459 (603)
T ss_pred eEEEEcCCC
Confidence 677776643
No 124
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=70.65 E-value=87 Score=28.71 Aligned_cols=185 Identities=17% Similarity=0.290 Sum_probs=85.4
Q ss_pred ceEEEECCEEEEEecCC----CCCCcccceEEEe-CCCCeEecCCCC---CC---CCccceEEEEEeCCEEEEEcCCCCC
Q 016877 115 GAAIQIKNLLYVFAGYG----SIDYVHSHVDIYN-FTDNTWGGRFDM---PR---EMAHSHLGMVTDGRYIYVVTGQYGP 183 (381)
Q Consensus 115 ~~~~~~~~~iyv~GG~~----~~~~~~~~~~~yd-~~~~~W~~~~~~---~~---~~~r~~~~~~~~~~~iyv~GG~~~~ 183 (381)
++.+.+++.|+++.... ........+..+. ....+|...... .. -..-...++++.+++||++-|....
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 35677899998887632 1122222233343 445578764211 11 1112356778889999987665433
Q ss_pred CCCCCcceEEEEE--CCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCC-----C-------CCCCCcc-ceEeeeec
Q 016877 184 QCRGPTAHTFVLD--TETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGE-----N-------RYTPEVD-HWSLAVKD 248 (381)
Q Consensus 184 ~~~~~~~~~~~yd--~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~-----~-------~~~~~~~-~~~~~~~~ 248 (381)
......-++..+- ....+|.....++..-..+. +.++-||..+ . ......+ .+.+.+|+
T Consensus 82 ~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~------~~figgGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS 155 (310)
T PF13859_consen 82 SAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSW------KQFIGGGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYS 155 (310)
T ss_dssp --SSTTEEEEEEEEESSSSEE---EE-GGGS-EEE------EEEEE-SEE-EE-TTS-EEEEEEEEETT---EEEEEEEE
T ss_pred cccccccceeeeeccCCcceeeecccCCchhcccc------ceeecCCCCceEEcCCCEEEEEeeeccCccceEEEEEEE
Confidence 2111233344442 23346988766653222100 1233333211 0 0111223 47777776
Q ss_pred CCccCCceEEecCCC-CCCcceeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEE-cCC
Q 016877 249 GKPLEKEWRTEIPIP-RGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKV-LPS 324 (381)
Q Consensus 249 ~~~~~~~W~~~~~~p-~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~-i~~ 324 (381)
- .....|+-...++ ..+..++++.. +++|+++.-.... ...+|.=. -..+|++ +.+
T Consensus 156 ~-d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g-------------------~rrVYeS~DmG~tWtea~gt 215 (310)
T PF13859_consen 156 T-DDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDG-------------------RRRVYESGDMGTTWTEALGT 215 (310)
T ss_dssp S-STTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS----------------------EEEESSTTSS-EE-TTT
T ss_pred C-CCccceEeccccCCCCcceEEEEeccCCeeEEEEecccc-------------------eEEEEEEcccceehhhccCc
Confidence 3 3467999766664 55556677777 7899998755432 22466553 5678998 444
Q ss_pred C
Q 016877 325 M 325 (381)
Q Consensus 325 ~ 325 (381)
+
T Consensus 216 l 216 (310)
T PF13859_consen 216 L 216 (310)
T ss_dssp T
T ss_pred c
Confidence 4
No 125
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=68.49 E-value=89 Score=28.02 Aligned_cols=116 Identities=12% Similarity=0.113 Sum_probs=59.2
Q ss_pred eEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEE--EeCCEEEEEcCCCCCCCCCCcceEE
Q 016877 116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV--TDGRYIYVVTGQYGPQCRGPTAHTF 193 (381)
Q Consensus 116 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~ 193 (381)
.|+.-++.+++.-=. -+-+-..|+.+..=+.++ .|.+. ......+ ---+.+++.- .+ ...+.
T Consensus 194 i~atpdGsvwyasla------gnaiaridp~~~~aev~p-~P~~~-~~gsRriwsdpig~~witt--wg------~g~l~ 257 (353)
T COG4257 194 ICATPDGSVWYASLA------GNAIARIDPFAGHAEVVP-QPNAL-KAGSRRIWSDPIGRAWITT--WG------TGSLH 257 (353)
T ss_pred eEECCCCcEEEEecc------ccceEEcccccCCcceec-CCCcc-cccccccccCccCcEEEec--cC------Cceee
Confidence 345557777775211 133566777766433332 12210 1111111 1235567651 11 35689
Q ss_pred EEECCCCcEEeCCCCC--CCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEec
Q 016877 194 VLDTETKKWQDLPPLP--VPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI 260 (381)
Q Consensus 194 ~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 260 (381)
+|||.+..|.+.+ +| .+|-...-+--.+++++.--. .+ .+-+|||++.+.+.++
T Consensus 258 rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~sea~-----ag-------ai~rfdpeta~ftv~p 313 (353)
T COG4257 258 RFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSEAD-----AG-------AIGRFDPETARFTVLP 313 (353)
T ss_pred EeCcccccceeee-CCCCCCCcceeeeccCCcEEeeccc-----cC-------ceeecCcccceEEEec
Confidence 9999999999876 33 344433333344566653110 11 1334568888888654
No 126
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=67.02 E-value=39 Score=31.01 Aligned_cols=178 Identities=9% Similarity=0.039 Sum_probs=94.1
Q ss_pred EcCEEEEecCCCCCcccceeeeeeCCCce-eeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEccC---
Q 016877 32 VADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKA--- 107 (381)
Q Consensus 32 ~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~--- 107 (381)
+++++.+.|.++. ++-.||..++. ...--.+...-.++....+....|..-.+-.++..+.++. ++-
T Consensus 245 yd~rviisGSSDs-----TvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~----it~rrV 315 (499)
T KOG0281|consen 245 YDERVIVSGSSDS-----TVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTD----ITLRRV 315 (499)
T ss_pred ccceEEEecCCCc-----eEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchH----HHHHHH
Confidence 3788888876444 77889998886 2221122222223333333333443333334444444331 111
Q ss_pred CCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCC
Q 016877 108 APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRG 187 (381)
Q Consensus 108 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 187 (381)
+--.|+...++-++++.+|..-.+ ..+-.++..+....+. +.. .+.+.+++-+.+++.|.|..
T Consensus 316 LvGHrAaVNvVdfd~kyIVsASgD------RTikvW~~st~efvRt--l~g--HkRGIAClQYr~rlvVSGSS------- 378 (499)
T KOG0281|consen 316 LVGHRAAVNVVDFDDKYIVSASGD------RTIKVWSTSTCEFVRT--LNG--HKRGIACLQYRDRLVVSGSS------- 378 (499)
T ss_pred HhhhhhheeeeccccceEEEecCC------ceEEEEeccceeeehh--hhc--ccccceehhccCeEEEecCC-------
Confidence 122333334455577744433211 3466677777666553 322 13356777889998887753
Q ss_pred CcceEEEEECCCCcEEeCCCCCCCC-cccEEEEECCEEEEEccCCCCCCCCCccceEe
Q 016877 188 PTAHTFVLDTETKKWQDLPPLPVPR-YAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 244 (381)
Q Consensus 188 ~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 244 (381)
-+.+-.+|.+...--++ .... ..--..-++++-+|.|++++ .+..|++
T Consensus 379 -DntIRlwdi~~G~cLRv---LeGHEeLvRciRFd~krIVSGaYDG-----kikvWdl 427 (499)
T KOG0281|consen 379 -DNTIRLWDIECGACLRV---LEGHEELVRCIRFDNKRIVSGAYDG-----KIKVWDL 427 (499)
T ss_pred -CceEEEEeccccHHHHH---HhchHHhhhheeecCceeeeccccc-----eEEEEec
Confidence 35567788876543221 1111 11123457889999998765 5788876
No 127
>smart00284 OLF Olfactomedin-like domains.
Probab=64.22 E-value=1e+02 Score=27.26 Aligned_cols=194 Identities=13% Similarity=0.052 Sum_probs=98.4
Q ss_pred cccccCCCCCCCCceehhHHHHHHhhheeEcCEEEEecCCCCCcccceeeeeeC----CCce----eeecCCCCCCCcee
Q 016877 3 RSFVGKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSP----YHNS----IILPNNGPQKGENI 74 (381)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~----~~~~----~~~p~~~~~~~~~~ 74 (381)
++-.|+|-+-|.+..- -++++|+.-+.. ...+.+..|.- ...+ ..||. +-.+-|.
T Consensus 17 ~~~~GaWmkD~~~~~~-------------~~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~--~~~GtG~ 79 (255)
T smart00284 17 KGKSGAWMKDPLWNTT-------------KKSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPH--AGQGTGV 79 (255)
T ss_pred CCccceeecCCCCCCC-------------CCceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCC--ccccccE
Confidence 3446777777665432 167899987643 12234555522 2222 23332 3345555
Q ss_pred EEeee-cccccccccCcceEeecCCCCCeEEccCCCCCCC---------C---ceEEEECCEEEEEecCCCC-CCcccce
Q 016877 75 GVKTK-KDVVPKRILPATFQDLPAPELKWEKMKAAPVPRL---------D---GAAIQIKNLLYVFAGYGSI-DYVHSHV 140 (381)
Q Consensus 75 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~r~---------~---~~~~~~~~~iyv~GG~~~~-~~~~~~~ 140 (381)
.+..+ .+-... -+..+.+||..+.+-.....+|.+.. . .-.++-++-|.|+=..... +.+ .+
T Consensus 80 VVYngslYY~~~--~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~i--vv 155 (255)
T smart00284 80 VVYNGSLYFNKF--NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKI--VI 155 (255)
T ss_pred EEECceEEEEec--CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCE--EE
Confidence 56555 444322 24579999999987544444443321 1 1123334456655433222 221 24
Q ss_pred EEEeCCC----CeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCC--CCCcc
Q 016877 141 DIYNFTD----NTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP--VPRYA 214 (381)
Q Consensus 141 ~~yd~~~----~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~ 214 (381)
-.+|+.+ ++|.. ..+. +... -+-++-|.+|+.-.... ....-.+.||+.+++=.. ..+| .+...
T Consensus 156 SkLnp~tL~ve~tW~T--~~~k--~sa~-naFmvCGvLY~~~s~~~----~~~~I~yayDt~t~~~~~-~~i~f~n~y~~ 225 (255)
T smart00284 156 SKLNPATLTIENTWIT--TYNK--RSAS-NAFMICGILYVTRSLGS----KGEKVFYAYDTNTGKEGH-LDIPFENMYEY 225 (255)
T ss_pred EeeCcccceEEEEEEc--CCCc--cccc-ccEEEeeEEEEEccCCC----CCcEEEEEEECCCCccce-eeeeecccccc
Confidence 5667664 46776 3333 1222 33344567999843111 123456789999887333 3344 33333
Q ss_pred cEEEEE---CCEEEEE
Q 016877 215 PATQLW---RGRLHVM 227 (381)
Q Consensus 215 ~~~~~~---~~~lyv~ 227 (381)
+++.-+ +.+||+.
T Consensus 226 ~s~l~YNP~d~~LY~w 241 (255)
T smart00284 226 ISMLDYNPNDRKLYAW 241 (255)
T ss_pred ceeceeCCCCCeEEEE
Confidence 444433 6778887
No 128
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=62.76 E-value=1.3e+02 Score=27.68 Aligned_cols=184 Identities=14% Similarity=0.198 Sum_probs=81.6
Q ss_pred EEEEEeCCEEEEEcCCC-CCCC-CCCcceEEEEE-CCCCcEEeCC---CC-----CCCCcccEEEEECCEEEEEccCCCC
Q 016877 165 LGMVTDGRYIYVVTGQY-GPQC-RGPTAHTFVLD-TETKKWQDLP---PL-----PVPRYAPATQLWRGRLHVMGGSGEN 233 (381)
Q Consensus 165 ~~~~~~~~~iyv~GG~~-~~~~-~~~~~~~~~yd-~~~~~W~~~~---~~-----p~~r~~~~~~~~~~~lyv~GG~~~~ 233 (381)
++++.+++.|+++.... .... .....-+..+- ....+|+... .. ......++.++-+++||++-|....
T Consensus 2 PSLV~vgGvv~AvAEa~~~~~~~~~~~~ias~~~~~~g~tw~~~~~~~~~~~~~~~v~v~rPTtvvkgn~IymLvG~y~~ 81 (310)
T PF13859_consen 2 PSLVEVGGVVFAVAEAQCKKSNDSGFTDIASEYSTDNGETWKAEVAVLNDDGSKKRVDVSRPTTVVKGNKIYMLVGSYSR 81 (310)
T ss_dssp EEEEEETTEEEEEEEEESS-S-SSS-EEEEEEEESSSSSS-EEEEEE----SS-TT-EEEEEEEEEETTEEEEEEEEESS
T ss_pred CCEEEECCEEEEEEEEEEccCCCCCceeEEEeEeeccccccccceeeecccccccccccceeeeeecceeEEEEEEEEec
Confidence 46788899999876432 2111 11122233343 4456786532 11 1122446667789999999875432
Q ss_pred CCCCCccceEeeeecCCccCCceEEecCCCCCCc----------ceeEEEeCCEE-EEEccCCCCCCCCCCCCccccccC
Q 016877 234 RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP----------HRACVVVDDRL-LVIGGQEGDFMAKPGSPIFKCSRR 302 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~----------~~~~~~~~~~l-~v~GG~~~~~~~~~~~~~~~~~~~ 302 (381)
.. ....|.+.+..-+....+|.....++.... +..+++-++.| |=+-+... .
T Consensus 82 ~~--~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a~~~---------------~ 144 (310)
T PF13859_consen 82 SA--GADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQATKK---------------N 144 (310)
T ss_dssp ----SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEEEET---------------T
T ss_pred cc--cccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEeeecc---------------C
Confidence 21 345677665553344457988655543221 11111112221 11111111 1
Q ss_pred ce-eecCceeEeC--CCCCeEEcCCCCCCCCCcceEEEEE-CCEEEEEcccccccCCceeeeeecceEEEEcCCCceEE
Q 016877 303 NE-VVYDDVYMLD--DEMKWKVLPSMPKPDSHIEFAWVLV-NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVL 377 (381)
Q Consensus 303 ~~-~~~~~v~~yd--~~~~W~~i~~~~~~~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 377 (381)
.. .+ .+..|. +...|+.-..++..- +..++++.. +++|+++.-.+... ..||.=.-...+|..
T Consensus 145 ~~~~~--SlIiYS~d~g~~W~lskg~s~~g-C~~psv~EWe~gkLlM~~~c~~g~---------rrVYeS~DmG~tWte 211 (310)
T PF13859_consen 145 GDGTV--SLIIYSTDDGKTWKLSKGMSPAG-CSDPSVVEWEDGKLLMMTACDDGR---------RRVYESGDMGTTWTE 211 (310)
T ss_dssp ---EE--EEEEEESSTTSS-EE-S----TT--EEEEEEEE-TTEEEEEEE-TTS------------EEEESSTTSS-EE
T ss_pred ccceE--EEEEEECCCccceEeccccCCCC-cceEEEEeccCCeeEEEEecccce---------EEEEEEcccceehhh
Confidence 11 12 234443 578998876666443 345678888 88999997654321 135544444567876
No 129
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=62.64 E-value=1.5e+02 Score=28.37 Aligned_cols=120 Identities=9% Similarity=0.134 Sum_probs=56.5
Q ss_pred EeecCCCCCeEEccCCC-CCCCCceEEEEC-CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC--CCCc-------
Q 016877 93 QDLPAPELKWEKMKAAP-VPRLDGAAIQIK-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP--REMA------- 161 (381)
Q Consensus 93 ~~~~~~~~~W~~l~~~p-~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~--~~~~------- 161 (381)
+.-.-.-++|++++..+ .+-.......++ +.++++|.. ..+++=+-.-.+|+.+...+ .+..
T Consensus 159 l~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~-------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~ 231 (398)
T PLN00033 159 LHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE-------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGI 231 (398)
T ss_pred EEEcCCCCCceECccccCCCCCceEEEEECCCceEEEecc-------ceEEEECCCCCCceEcccccccccccccccccc
Confidence 33333456999876422 122223333343 457777732 12444444566899862111 1110
Q ss_pred -------cceEEEE-EeCCEEEEEcCCCCCCCCCCcceEEE-EECCCCcEEeCCCCCCCCcccEE-EEECCEEEEEcc
Q 016877 162 -------HSHLGMV-TDGRYIYVVTGQYGPQCRGPTAHTFV-LDTETKKWQDLPPLPVPRYAPAT-QLWRGRLHVMGG 229 (381)
Q Consensus 162 -------r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~-yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~lyv~GG 229 (381)
.....+. ..++.++++|-. -.+++ .|.-...|+.+.... ++...++ ...++.++++|.
T Consensus 232 ~g~~~y~Gsf~~v~~~~dG~~~~vg~~---------G~~~~s~d~G~~~W~~~~~~~-~~~l~~v~~~~dg~l~l~g~ 299 (398)
T PLN00033 232 SGASYYTGTFSTVNRSPDGDYVAVSSR---------GNFYLTWEPGQPYWQPHNRAS-ARRIQNMGWRADGGLWLLTR 299 (398)
T ss_pred cccceeccceeeEEEcCCCCEEEEECC---------ccEEEecCCCCcceEEecCCC-ccceeeeeEcCCCCEEEEeC
Confidence 1111222 234455555421 12333 444445599886433 3333333 345778888764
No 130
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=62.43 E-value=1.1e+02 Score=26.95 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=59.2
Q ss_pred cceEEEEECCCCcEEeCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCc
Q 016877 189 TAHTFVLDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP 267 (381)
Q Consensus 189 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~ 267 (381)
...+-.+|..+.+=...-..+.+. .++-+ .+++|+.+. +..++..|+.. +-.--+--.||....
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~V--tSlEvs~dG~ilTia------~gssV~Fwdak-------sf~~lKs~k~P~nV~ 228 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPV--TSLEVSQDGRILTIA------YGSSVKFWDAK-------SFGLLKSYKMPCNVE 228 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCC--cceeeccCCCEEEEe------cCceeEEeccc-------cccceeeccCccccc
Confidence 345777888777533322223222 23333 456665553 12234444421 111111223555442
Q ss_pred ceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCC--CCCCCCcceEEEEECCEEE
Q 016877 268 HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSM--PKPDSHIEFAWVLVNNSIV 344 (381)
Q Consensus 268 ~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~--~~~~~~~~~~~~~~~~~l~ 344 (381)
. +...-+..+||.||.... +|.|| .+.. ++..- .++-.-+.. -...++++|
T Consensus 229 S-ASL~P~k~~fVaGged~~----------------------~~kfDy~Tge--Ei~~~nkgh~gpVhcV-rFSPdGE~y 282 (334)
T KOG0278|consen 229 S-ASLHPKKEFFVAGGEDFK----------------------VYKFDYNTGE--EIGSYNKGHFGPVHCV-RFSPDGELY 282 (334)
T ss_pred c-ccccCCCceEEecCcceE----------------------EEEEeccCCc--eeeecccCCCCceEEE-EECCCCcee
Confidence 1 222335579999998743 66666 4442 22221 111111222 255689999
Q ss_pred EEcccccc
Q 016877 345 IVGGTTEK 352 (381)
Q Consensus 345 v~GG~~~~ 352 (381)
..|..++.
T Consensus 283 AsGSEDGT 290 (334)
T KOG0278|consen 283 ASGSEDGT 290 (334)
T ss_pred eccCCCce
Confidence 99987764
No 131
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=60.41 E-value=70 Score=27.90 Aligned_cols=109 Identities=12% Similarity=0.050 Sum_probs=68.7
Q ss_pred eeEcCEEEEecCCCCCcccceeeeeeCCCce-eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCCCeEEccC
Q 016877 30 ALVADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELKWEKMKA 107 (381)
Q Consensus 30 ~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~~ 107 (381)
...++.=|..||.+- .+..||..+++ ..--. .+........+.. ..+.-...+...+..+|..+++-+++.-
T Consensus 67 ~s~Dnskf~s~GgDk-----~v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 67 LSSDNSKFASCGGDK-----AVQVWDVNTGKVDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred ccccccccccCCCCc-----eEEEEEcccCeeeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccch
Confidence 345667777777333 67899999987 22211 1111111222222 2222222344578889999998888888
Q ss_pred CCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeE
Q 016877 108 APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTW 150 (381)
Q Consensus 108 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 150 (381)
+.+++-.-.++.+.+..+|.|-.++ .+-.||....+-
T Consensus 141 ldea~D~V~Si~v~~heIvaGS~DG------tvRtydiR~G~l 177 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAEHEIVAGSVDG------TVRTYDIRKGTL 177 (307)
T ss_pred hhhhcCceeEEEecccEEEeeccCC------cEEEEEeeccee
Confidence 8889988888889998888886654 366788876643
No 132
>PRK10115 protease 2; Provisional
Probab=58.44 E-value=2.3e+02 Score=29.31 Aligned_cols=131 Identities=13% Similarity=0.099 Sum_probs=60.5
Q ss_pred cceEEEeCCCCeEec--CCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEEC--CCCcE-EeCCCCCCC
Q 016877 138 SHVDIYNFTDNTWGG--RFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDT--ETKKW-QDLPPLPVP 211 (381)
Q Consensus 138 ~~~~~yd~~~~~W~~--~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~--~~~~W-~~~~~~p~~ 211 (381)
.+++++++.++.-+. +-.-+.+ ......... +++..++..... ..+.++.|+. .+..| ..++.....
T Consensus 199 ~~v~~h~lgt~~~~d~lv~~e~~~--~~~~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (686)
T PRK10115 199 YQVWRHTIGTPASQDELVYEEKDD--TFYVSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADAEPFVFLPRRKDH 271 (686)
T ss_pred CEEEEEECCCChhHCeEEEeeCCC--CEEEEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCCCceEEEECCCCC
Confidence 569999999883221 2111111 122222222 444333443222 2356788884 23343 333222222
Q ss_pred CcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCC
Q 016877 212 RYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQE 285 (381)
Q Consensus 212 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~ 285 (381)
. ......++.+|+.--... ..+.+.....+ ...+|+.+.+......-..+...++.|++..-..
T Consensus 272 ~--~~~~~~~~~ly~~tn~~~-------~~~~l~~~~~~-~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~ 335 (686)
T PRK10115 272 E--YSLDHYQHRFYLRSNRHG-------KNFGLYRTRVR-DEQQWEELIPPRENIMLEGFTLFTDWLVVEERQR 335 (686)
T ss_pred E--EEEEeCCCEEEEEEcCCC-------CCceEEEecCC-CcccCeEEECCCCCCEEEEEEEECCEEEEEEEeC
Confidence 2 233345678888853321 12222222221 1468988766422222224455678777765443
No 133
>PLN00181 protein SPA1-RELATED; Provisional
Probab=57.77 E-value=2.5e+02 Score=29.53 Aligned_cols=99 Identities=8% Similarity=0.094 Sum_probs=48.0
Q ss_pred CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE--eCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTE 198 (381)
Q Consensus 121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~ 198 (381)
++.+++.|+.++ .+.+||..+..-.. .+... ..-.++.. .++++++.|+.+ ..+..||..
T Consensus 587 ~~~~L~Sgs~Dg------~v~iWd~~~~~~~~--~~~~~--~~v~~v~~~~~~g~~latgs~d--------g~I~iwD~~ 648 (793)
T PLN00181 587 DPTLLASGSDDG------SVKLWSINQGVSIG--TIKTK--ANICCVQFPSESGRSLAFGSAD--------HKVYYYDLR 648 (793)
T ss_pred CCCEEEEEcCCC------EEEEEECCCCcEEE--EEecC--CCeEEEEEeCCCCCEEEEEeCC--------CeEEEEECC
Confidence 457788887653 47778876543211 11110 01112222 246677777644 347889987
Q ss_pred CCc--EEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEe
Q 016877 199 TKK--WQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 244 (381)
Q Consensus 199 ~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 244 (381)
+.+ ...+.. ....-..+...++..++.|+.++ .+..|++
T Consensus 649 ~~~~~~~~~~~--h~~~V~~v~f~~~~~lvs~s~D~-----~ikiWd~ 689 (793)
T PLN00181 649 NPKLPLCTMIG--HSKTVSYVRFVDSSTLVSSSTDN-----TLKLWDL 689 (793)
T ss_pred CCCccceEecC--CCCCEEEEEEeCCCEEEEEECCC-----EEEEEeC
Confidence 542 111111 11111223334666666766443 4556654
No 134
>PRK02889 tolB translocation protein TolB; Provisional
Probab=56.97 E-value=1.9e+02 Score=27.80 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=35.4
Q ss_pred cceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC
Q 016877 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP 207 (381)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~ 207 (381)
..++++|+.+.+=..+...+.. .......-.+++|++....++ ..++|.+|..+...+.+..
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~--~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGS--NSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCC--ccceEECCCCCEEEEEEccCC------CceEEEEECCCCCcEECCC
Confidence 3599999988765555544421 111222223445655443332 3679999998777666543
No 135
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.46 E-value=1.3e+02 Score=25.85 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=63.1
Q ss_pred CCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCC-CCCcccEEEEECCEEEEEccCCC
Q 016877 154 FDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGE 232 (381)
Q Consensus 154 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~ 232 (381)
...|.....+.-++...++++|.--|..+ .+.+.++|..+.+=..-.+++ ..-.+-....+++.+|..--.++
T Consensus 38 ~~yphDs~sfTQGL~~~~g~i~esTG~yg------~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~eg 111 (262)
T COG3823 38 RTYPHDSTSFTQGLEYLDGHILESTGLYG------FSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEG 111 (262)
T ss_pred EeccCchhhhhcceeeeCCEEEEeccccc------cceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccc
Confidence 34444333344567778899999888766 466899999866532222333 34455566778999998854333
Q ss_pred CCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccC
Q 016877 233 NRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQ 284 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~ 284 (381)
-.+. | | .++.+.+...+..+-+-+.+.-+..|++-.|.
T Consensus 112 vaf~-----~-------d--~~t~~~lg~~~y~GeGWgLt~d~~~LimsdGs 149 (262)
T COG3823 112 VAFK-----Y-------D--ADTLEELGRFSYEGEGWGLTSDDKNLIMSDGS 149 (262)
T ss_pred eeEE-----E-------C--hHHhhhhcccccCCcceeeecCCcceEeeCCc
Confidence 2111 1 1 12223344444444444566666666665554
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.35 E-value=1.6e+02 Score=26.82 Aligned_cols=111 Identities=10% Similarity=0.086 Sum_probs=53.9
Q ss_pred eecCCCCCeEEccCCCCCCCCceEEEEC----CEEEEEecCCCCCCcccceEEEeCC-CCeEecCCC---CCCCCccc--
Q 016877 94 DLPAPELKWEKMKAAPVPRLDGAAIQIK----NLLYVFAGYGSIDYVHSHVDIYNFT-DNTWGGRFD---MPREMAHS-- 163 (381)
Q Consensus 94 ~~~~~~~~W~~l~~~p~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~yd~~-~~~W~~~~~---~~~~~~r~-- 163 (381)
.++..+.+|.+...|...|....-+.+. +...+.-+.++ .+.--+..||. ..+|..... ++.|..+.
T Consensus 94 ~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG---~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 94 SEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG---ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred ccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc---EEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 4455667899988887777664443332 22333333322 11112222332 246876432 22332222
Q ss_pred eEEEEEeC-----CEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCC
Q 016877 164 HLGMVTDG-----RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL 208 (381)
Q Consensus 164 ~~~~~~~~-----~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 208 (381)
...++..+ ..++++|-.. .........+|.|+-..++|.+++.+
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs~e-~a~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGSDE-DAPHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred cceEEeeccccccCceEEEEccc-CCccccceEEEEecCCcceeeeehhc
Confidence 22222222 3355665433 22111234567778888899998643
No 137
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=55.98 E-value=1.9e+02 Score=27.62 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=23.7
Q ss_pred EEEC--CEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeecC
Q 016877 337 VLVN--NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML 381 (381)
Q Consensus 337 ~~~~--~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~l 381 (381)
+.+| +..++++|.+- .|+.|+-.+.+|+++..+
T Consensus 438 ~~fD~SGt~L~~~g~~l------------~Vy~~~k~~k~W~~~~~~ 472 (506)
T KOG0289|consen 438 LSFDQSGTYLGIAGSDL------------QVYICKKKTKSWTEIKEL 472 (506)
T ss_pred EEEcCCCCeEEeeccee------------EEEEEecccccceeeehh
Confidence 4444 77777776542 388888889999988653
No 138
>PRK02889 tolB translocation protein TolB; Provisional
Probab=55.61 E-value=2e+02 Score=27.65 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=31.1
Q ss_pred cceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCC
Q 016877 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL 208 (381)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 208 (381)
..++..|.....-+.+...+.+. ......-.+++|+.. ..... ...++.+|+.+.+=+.+...
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v--~~p~wSPDG~~la~~-s~~~~-----~~~I~~~dl~~g~~~~l~~~ 238 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPI--ISPAWSPDGTKLAYV-SFESK-----KPVVYVHDLATGRRRVVANF 238 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCc--ccceEcCCCCEEEEE-EccCC-----CcEEEEEECCCCCEEEeecC
Confidence 45888888655444443222211 111222233444433 22211 35699999988765555433
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=54.70 E-value=2.4e+02 Score=28.46 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=50.5
Q ss_pred hheeEcCEEEEecCCCCCcccceeeeeeCCCce-eeecCCCCCCCceeEEeee-cccccccccCcceEeecC--CCCCeE
Q 016877 28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPA--PELKWE 103 (381)
Q Consensus 28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~W~ 103 (381)
++.++.+-..+.|=+. ..+..||+++.+ .+--.......+.+++... ....+.. +...+..|-. ..++|.
T Consensus 209 Sv~~Lrd~tI~sgDS~-----G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG-vd~~ii~~~~~~~~~~wv 282 (691)
T KOG2048|consen 209 SVLFLRDSTIASGDSA-----GTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG-VDPKIIQYSLTTNKSEWV 282 (691)
T ss_pred EEEEeecCcEEEecCC-----ceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc-CCCceEEEEecCCcccee
Confidence 3455566666666433 389999999998 3332322223344444433 2222221 2234444433 333687
Q ss_pred EccCCC-CCCCCceEEEECCEEEEEecCCC
Q 016877 104 KMKAAP-VPRLDGAAIQIKNLLYVFAGYGS 132 (381)
Q Consensus 104 ~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~ 132 (381)
.....- .++.--++++++. +.+.||.+.
T Consensus 283 ~~~~r~~h~hdvrs~av~~~-~l~sgG~d~ 311 (691)
T KOG2048|consen 283 INSRRDLHAHDVRSMAVIEN-ALISGGRDF 311 (691)
T ss_pred eeccccCCcccceeeeeecc-eEEecceee
Confidence 765422 3333345566666 777888753
No 140
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=53.98 E-value=2.1e+02 Score=27.41 Aligned_cols=120 Identities=13% Similarity=0.252 Sum_probs=60.7
Q ss_pred EEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCccc--EEEEECCEEEEEccCCCCCCCCCccc
Q 016877 165 LGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP--ATQLWRGRLHVMGGSGENRYTPEVDH 241 (381)
Q Consensus 165 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~--~~~~~~~~lyv~GG~~~~~~~~~~~~ 241 (381)
++.+.+ ++.|+..|-. -..+-.||..... .++..|. ..+. +....+|-.|+.-+.++ ..+..
T Consensus 351 ts~~fHpDgLifgtgt~--------d~~vkiwdlks~~--~~a~Fpg-ht~~vk~i~FsENGY~Lat~add----~~V~l 415 (506)
T KOG0289|consen 351 TSAAFHPDGLIFGTGTP--------DGVVKIWDLKSQT--NVAKFPG-HTGPVKAISFSENGYWLATAADD----GSVKL 415 (506)
T ss_pred EEeeEcCCceEEeccCC--------CceEEEEEcCCcc--ccccCCC-CCCceeEEEeccCceEEEEEecC----CeEEE
Confidence 344444 5555555432 2346778888775 5665554 2211 22223444454444432 23677
Q ss_pred eEeeeecCCccCCceEEecCCCCCCcceeEEEe--CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCC
Q 016877 242 WSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVV--DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~ 318 (381)
|++. ...-.+.. +++... ......+ .++.++++|.+ -.||.++ .+..
T Consensus 416 wDLR------Kl~n~kt~-~l~~~~-~v~s~~fD~SGt~L~~~g~~----------------------l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 416 WDLR------KLKNFKTI-QLDEKK-EVNSLSFDQSGTYLGIAGSD----------------------LQVYICKKKTKS 465 (506)
T ss_pred EEeh------hhccccee-eccccc-cceeEEEcCCCCeEEeecce----------------------eEEEEEeccccc
Confidence 8763 11111111 112211 1122333 45677777653 2378887 7899
Q ss_pred eEEcCCCCCCC
Q 016877 319 WKVLPSMPKPD 329 (381)
Q Consensus 319 W~~i~~~~~~~ 329 (381)
|+.+..++...
T Consensus 466 W~~~~~~~~~s 476 (506)
T KOG0289|consen 466 WTEIKELADHS 476 (506)
T ss_pred ceeeehhhhcc
Confidence 99998765433
No 141
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=53.60 E-value=2.4e+02 Score=28.07 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=42.6
Q ss_pred CCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCC
Q 016877 110 VPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRG 187 (381)
Q Consensus 110 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 187 (381)
.|+.+.-++.. .-.||+.|- .++++++|++.++|-. ++....+.-.+.-..--..++.+||.++
T Consensus 132 IP~~GRDm~y~~~scDly~~gs-------g~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~g----- 197 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS-------GSEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTEDG----- 197 (703)
T ss_pred cCcCCccccccCCCccEEEeec-------CcceEEEEcccccccc--ccccccccceeeeecCccceEEecccCc-----
Confidence 44444334333 336887763 2579999999999976 2222111112222222345888888544
Q ss_pred CcceEEEEECCCCc
Q 016877 188 PTAHTFVLDTETKK 201 (381)
Q Consensus 188 ~~~~~~~yd~~~~~ 201 (381)
.|+.+|+.+..
T Consensus 198 ---~VEfwDpR~ks 208 (703)
T KOG2321|consen 198 ---VVEFWDPRDKS 208 (703)
T ss_pred ---eEEEecchhhh
Confidence 48888887654
No 142
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=50.77 E-value=1.8e+02 Score=25.82 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=38.1
Q ss_pred ceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCC
Q 016877 115 GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQ 180 (381)
Q Consensus 115 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 180 (381)
..+-..++.+|+.--......+-+.+.+-+.....|..+. +|.-......-.+..++.||+||-.
T Consensus 194 PCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slr-fp~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 194 PCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLR-FPNNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE--TT---SS---EEEETTEEEEEEE-
T ss_pred chhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcc-ccccccccCCCceeeCCEEEEEecc
Confidence 3445679999987654433344566888888888999863 2332234455678899999999954
No 143
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=49.39 E-value=2e+02 Score=25.85 Aligned_cols=184 Identities=12% Similarity=0.075 Sum_probs=86.8
Q ss_pred eEcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEccCC
Q 016877 31 LVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAA 108 (381)
Q Consensus 31 ~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~ 108 (381)
..++.+.+.+++++ ++-.||..+++ .++.. +.+.-.+++.--...-.........+-.+|.....=-.+..-
T Consensus 72 s~dg~~alS~swD~-----~lrlWDl~~g~~t~~f~G-H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~ 145 (315)
T KOG0279|consen 72 SSDGNFALSASWDG-----TLRLWDLATGESTRRFVG-HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED 145 (315)
T ss_pred ccCCceEEeccccc-----eEEEEEecCCcEEEEEEe-cCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC
Confidence 34666777777666 67889998876 33322 112222222111111111111122233333333211111111
Q ss_pred CCCCCCceEEEE--C--CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCC
Q 016877 109 PVPRLDGAAIQI--K--NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQ 184 (381)
Q Consensus 109 p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 184 (381)
.. |..-+++.+ + +-++|-+|.+ ..+-++|+.+-+-.. ..+....--....+..++.+.+.||.++.
T Consensus 146 ~~-~~WVscvrfsP~~~~p~Ivs~s~D------ktvKvWnl~~~~l~~--~~~gh~~~v~t~~vSpDGslcasGgkdg~- 215 (315)
T KOG0279|consen 146 SH-REWVSCVRFSPNESNPIIVSASWD------KTVKVWNLRNCQLRT--TFIGHSGYVNTVTVSPDGSLCASGGKDGE- 215 (315)
T ss_pred CC-cCcEEEEEEcCCCCCcEEEEccCC------ceEEEEccCCcchhh--ccccccccEEEEEECCCCCEEecCCCCce-
Confidence 01 333333333 2 3566677665 346677776554333 22321112233344578999999998763
Q ss_pred CCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEe
Q 016877 185 CRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 244 (381)
Q Consensus 185 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 244 (381)
+...|+...+= +-.+...-.-++++...++.++.-+.. .++..|++
T Consensus 216 -------~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~-----~sIkIwdl 261 (315)
T KOG0279|consen 216 -------AMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATA-----TSIKIWDL 261 (315)
T ss_pred -------EEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccC-----CceEEEec
Confidence 44555554331 333444444456666677766665543 24555654
No 144
>PRK03629 tolB translocation protein TolB; Provisional
Probab=48.67 E-value=2.5e+02 Score=26.92 Aligned_cols=63 Identities=14% Similarity=0.234 Sum_probs=37.9
Q ss_pred cceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCC
Q 016877 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL 208 (381)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~ 208 (381)
..++++|+.+++-+.+...+.. -......-.+.+|++.....+ ..+++.+|.++.+.+.+..-
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~--~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~~~~lt~~ 285 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRH--NGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQVTDG 285 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCC--cCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCCEEEccCC
Confidence 4589999988877776655442 112222223445665533222 24699999998887776543
No 145
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=48.65 E-value=1.9e+02 Score=25.53 Aligned_cols=120 Identities=12% Similarity=0.096 Sum_probs=59.0
Q ss_pred ceEeecCCCCCeEEccCCCCCCCCceE-EEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877 91 TFQDLPAPELKWEKMKAAPVPRLDGAA-IQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169 (381)
Q Consensus 91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 169 (381)
.+..+|..+.+=.+--.++.+- -++ +..+++|+.+.- -+++..+|+++-.-.+--.||. .-..+...
T Consensus 166 tVRLWD~rTgt~v~sL~~~s~V--tSlEvs~dG~ilTia~-------gssV~Fwdaksf~~lKs~k~P~---nV~SASL~ 233 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEFNSPV--TSLEVSQDGRILTIAY-------GSSVKFWDAKSFGLLKSYKMPC---NVESASLH 233 (334)
T ss_pred ceEEEEeccCcEEEEEecCCCC--cceeeccCCCEEEEec-------CceeEEeccccccceeeccCcc---cccccccc
Confidence 4556666665422111122222 222 233556555431 1346666765443333234454 22222333
Q ss_pred eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcc--cEEE-EECCEEEEEccCCC
Q 016877 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYA--PATQ-LWRGRLHVMGGSGE 232 (381)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~-~~~~~lyv~GG~~~ 232 (381)
-+..+||.||.+. .+++||-.|.. ++........+ |++- .-++.+|..|..++
T Consensus 234 P~k~~fVaGged~--------~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 234 PKKEFFVAGGEDF--------KVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred CCCceEEecCcce--------EEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence 4557999999643 47788888774 22222222222 2222 24889999987554
No 146
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=48.43 E-value=1.6e+02 Score=24.65 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=42.8
Q ss_pred cccceEEEeCCCCeEecC--CCCC-CCCccceEEEEEeCC-EEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCC
Q 016877 136 VHSHVDIYNFTDNTWGGR--FDMP-REMAHSHLGMVTDGR-YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVP 211 (381)
Q Consensus 136 ~~~~~~~yd~~~~~W~~~--~~~~-~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 211 (381)
-...++++|..++.|..+ .+.+ .-.+. ...=..+. -++|+|-..|.-. .-..++.|++.++.=+.+-+...-
T Consensus 86 giGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS--~GGnLy~~nl~tg~~~~ly~~~dk 161 (200)
T PF15525_consen 86 GIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVS--KGGNLYKYNLNTGNLTELYEWKDK 161 (200)
T ss_pred cceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEc--cCCeEEEEEccCCceeEeeecccc
Confidence 356799999999988765 2322 11112 11222333 4556664443221 136799999999988887666544
Q ss_pred C
Q 016877 212 R 212 (381)
Q Consensus 212 r 212 (381)
.
T Consensus 162 k 162 (200)
T PF15525_consen 162 K 162 (200)
T ss_pred c
Confidence 3
No 147
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=48.12 E-value=3.5e+02 Score=28.39 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=25.5
Q ss_pred EEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCC--cEEeCCCCC
Q 016877 165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK--KWQDLPPLP 209 (381)
Q Consensus 165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p 209 (381)
.+-++.++.||+... .+.++.+|.+|. .|+.-+..+
T Consensus 188 ~TPlvvgg~lYv~t~---------~~~V~ALDa~TGk~lW~~d~~~~ 225 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP---------HNKVIALDAATGKEKWKFDPKLK 225 (764)
T ss_pred cCCEEECCEEEEECC---------CCeEEEEECCCCcEEEEEcCCCC
Confidence 445678999999743 356899998865 488766544
No 148
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=47.78 E-value=3e+02 Score=27.46 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=20.1
Q ss_pred cCCccCCceEEecCCCCCCcceeEEEe--CCEEEEEccCCCC
Q 016877 248 DGKPLEKEWRTEIPIPRGGPHRACVVV--DDRLLVIGGQEGD 287 (381)
Q Consensus 248 ~~~~~~~~W~~~~~~p~~~~~~~~~~~--~~~l~v~GG~~~~ 287 (381)
+++.+.+.|-..-....+.. -++.+ -+.|+.+|+..+.
T Consensus 159 RlNLEqGrfL~P~~~~~~~l--N~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 159 RLNLEQGRFLNPFETDSGEL--NVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred EEEccccccccccccccccc--eeeeecCccceEEecccCce
Confidence 33456667754322222222 33333 4569999987653
No 149
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=47.07 E-value=43 Score=19.65 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=16.7
Q ss_pred EEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877 165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET 199 (381)
Q Consensus 165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~ 199 (381)
.+.++.++.+|+.+. ...++.+|++|
T Consensus 15 ~~~~v~~g~vyv~~~---------dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG---------DGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-T---------TSEEEEEETT-
T ss_pred cCCEEECCEEEEEcC---------CCEEEEEeCCC
Confidence 345778899998754 35688998875
No 150
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=46.05 E-value=93 Score=24.52 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=20.1
Q ss_pred CCEEEEEcccccccCCceeeeeecceEEEEcCCCc--eEEee
Q 016877 340 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV--AVLNA 379 (381)
Q Consensus 340 ~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~i~ 379 (381)
...|.++||.. .++-||-+.++ |..-+
T Consensus 107 ~~~l~ivGGnc-------------si~Gfd~~G~e~fWtVtg 135 (136)
T PF14781_consen 107 PSPLVIVGGNC-------------SIQGFDYEGNEIFWTVTG 135 (136)
T ss_pred CCcEEEECceE-------------EEEEeCCCCcEEEEEecc
Confidence 57899999976 47888887766 76543
No 151
>PRK04043 tolB translocation protein TolB; Provisional
Probab=45.73 E-value=2.8e+02 Score=26.60 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=61.2
Q ss_pred ceEeecCCCCCeEEccCCCCCCCCceEEEECC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169 (381)
Q Consensus 91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 169 (381)
.++.+|..+.+=+++...+. ........-++ +|++.-..++ ..+++.+|..+..++++...+. ........-
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~~~--~d~~p~~SP 286 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNYPG--IDVNGNFVE 286 (419)
T ss_pred EEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccCCC--ccCccEECC
Confidence 68888887776556554221 11112223344 5655443322 2479999999999998865543 112223333
Q ss_pred eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC
Q 016877 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP 206 (381)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~ 206 (381)
.+.+||+.....+ ..+++.+|..+.+.+++.
T Consensus 287 DG~~I~F~Sdr~g------~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 287 DDKRIVFVSDRLG------YPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred CCCEEEEEECCCC------CceEEEEECCCCCeEeCc
Confidence 4567777654322 367999999998887765
No 152
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=43.28 E-value=4e+02 Score=27.61 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=26.0
Q ss_pred eEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEe
Q 016877 191 HTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 244 (381)
Q Consensus 191 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 244 (381)
.+.+|+..++....-.+-...|....+..-++.+++.|+-++ ++..|+.
T Consensus 331 QLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-----KVKvWn~ 379 (893)
T KOG0291|consen 331 QLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG-----KVKVWNT 379 (893)
T ss_pred eEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC-----cEEEEec
Confidence 455555554444333333344444333345777888777544 5677763
No 153
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=42.22 E-value=2.4e+02 Score=24.81 Aligned_cols=187 Identities=16% Similarity=0.096 Sum_probs=90.6
Q ss_pred cCCCCCCCCceehhHHHHHHhhheeEcCEEEEecCCCCCcccceeeeeeCCCc----e--eeecCCCCCCCceeEEeee-
Q 016877 7 GKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHN----S--IILPNNGPQKGENIGVKTK- 79 (381)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~----~--~~~p~~~~~~~~~~~~~~~- 79 (381)
|.|-+.|.++ ++++|+..+..+ . .+..|...+. . ...--+.+..+.|..+..+
T Consensus 20 GsWmrDpl~~----------------~~r~~~~~~~~~-~---~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs 79 (249)
T KOG3545|consen 20 GAWMRDPLPA----------------DDRIYVMNYFDG-L---MLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGS 79 (249)
T ss_pred ceeecCCCcc----------------cCceEEeccccC-c---eEEEeccHHHhhccCcceEEeCCCCccccceEEEcce
Confidence 8888888776 788899844333 2 2333333111 1 1111144445666666655
Q ss_pred cccccccccCcceEeecCCCC---CeEEccCCCCC---------CCCceEEEECCEEEEEecCCCCCCcccceEEEeCC-
Q 016877 80 KDVVPKRILPATFQDLPAPEL---KWEKMKAAPVP---------RLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFT- 146 (381)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~---~W~~l~~~p~~---------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~- 146 (381)
.+.... -+..+.+|+..+. .|..++.+... -...-.++-.+-++|+--....... -.+-.+|+.
T Consensus 80 ~yynk~--~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~-iv~skLdp~t 156 (249)
T KOG3545|consen 80 LYYNKA--GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGT-IVLSKLDPET 156 (249)
T ss_pred EEeecc--CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCc-EEeeccCHHH
Confidence 333222 2235677776663 34454432111 1111233444456655443322221 114567764
Q ss_pred ---CCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceE-EEEECCCCcEEeCCCCCCC-CcccEEEE--
Q 016877 147 ---DNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHT-FVLDTETKKWQDLPPLPVP-RYAPATQL-- 219 (381)
Q Consensus 147 ---~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-~~yd~~~~~W~~~~~~p~~-r~~~~~~~-- 219 (381)
..+|..- .+. +....+-.+-+.+|++-...... ..+ +.||..+++-+.+ ++|.+ ++.+...+
T Consensus 157 l~~e~tW~T~--~~k---~~~~~aF~iCGvLY~v~S~~~~~-----~~i~yaydt~~~~~~~~-~ipf~N~y~~~~~idY 225 (249)
T KOG3545|consen 157 LEVERTWNTT--LPK---RSAGNAFMICGVLYVVHSYNCTH-----TQISYAYDTTTGTQERI-DLPFPNPYSYATMIDY 225 (249)
T ss_pred hheeeeeccc--cCC---CCcCceEEEeeeeEEEeccccCC-----ceEEEEEEcCCCceecc-cccccchhhhhhccCC
Confidence 3467542 222 22223333445688885443322 223 7899998886443 44433 33333332
Q ss_pred --ECCEEEEE
Q 016877 220 --WRGRLHVM 227 (381)
Q Consensus 220 --~~~~lyv~ 227 (381)
.+.+||++
T Consensus 226 NP~D~~LY~w 235 (249)
T KOG3545|consen 226 NPRDRRLYAW 235 (249)
T ss_pred CcccceeeEe
Confidence 36788888
No 154
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=41.60 E-value=2.4e+02 Score=25.65 Aligned_cols=132 Identities=11% Similarity=0.042 Sum_probs=60.4
Q ss_pred cCEEEEecCCCCCcccceeeeeeCCCce-eeecC-CCC-CCCceeEEeeecccccccccCcceEeecCCCCCeEEccCCC
Q 016877 33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGP-QKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAP 109 (381)
Q Consensus 33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p 109 (381)
++...+.|+.++ ++..||+.+++ .++.. ..| |..+-+....-.....+.. ...+-..|+.... .+..+.
T Consensus 83 dgskVf~g~~Dk-----~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSW-DKTlKfWD~R~~~--pv~t~~ 154 (347)
T KOG0647|consen 83 DGSKVFSGGCDK-----QAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSW-DKTLKFWDTRSSN--PVATLQ 154 (347)
T ss_pred CCceEEeeccCC-----ceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEeccc-ccceeecccCCCC--eeeeee
Confidence 344445555554 67899999999 55544 111 1111111100001111111 1234445555332 233333
Q ss_pred CCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCC-CCCCCCccceEEEEEeCCEEEEEcCCCC
Q 016877 110 VPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRF-DMPREMAHSHLGMVTDGRYIYVVTGQYG 182 (381)
Q Consensus 110 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 182 (381)
.|-..+++-+....+.|.-+ .+.+.+|+++... ..++. ++.. -....++..++.-|++|+..|
T Consensus 155 LPeRvYa~Dv~~pm~vVata-------~r~i~vynL~n~~te~k~~~SpLk~---Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 155 LPERVYAADVLYPMAVVATA-------ERHIAVYNLENPPTEFKRIESPLKW---QTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred ccceeeehhccCceeEEEec-------CCcEEEEEcCCCcchhhhhcCcccc---eeeEEEEEecCCceEeeeecc
Confidence 44444444444444444332 1357888886543 33332 2222 112334445667889998665
No 155
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=40.90 E-value=3.1e+02 Score=25.62 Aligned_cols=151 Identities=17% Similarity=0.110 Sum_probs=79.9
Q ss_pred heeEcCEEEEecCCCCCcccceeeeeeCCCce-e-eecCCC--CCCCceeEEe-eecccccccccCcceEeecCCC--CC
Q 016877 29 FALVADFFWASSSKFTSSYLNIASNWSPYHNS-I-ILPNNG--PQKGENIGVK-TKKDVVPKRILPATFQDLPAPE--LK 101 (381)
Q Consensus 29 ~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~-~~p~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~ 101 (381)
.+..++.+|+. ..++ .+.++|+.+++ . ..+... ....-+...- +.++...... .++++|..+ ..
T Consensus 64 ~~~~dg~v~~~-~~~G-----~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g---~~y~ld~~~G~~~ 134 (370)
T COG1520 64 PADGDGTVYVG-TRDG-----NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDG---KLYALDASTGTLV 134 (370)
T ss_pred cEeeCCeEEEe-cCCC-----cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccc---eEEEEECCCCcEE
Confidence 47789999987 2222 77899999988 2 111111 1111111111 2233332222 678888843 37
Q ss_pred eEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCC--eEecCCCCCCCCccceEEEEEeCCEEEEEcC
Q 016877 102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREMAHSHLGMVTDGRYIYVVTG 179 (381)
Q Consensus 102 W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG 179 (381)
|+.-.+.. ++.....+..++.+|+.- ....+.++|..+. .|+.-.+.+.+ .+.....+..++.+|+-.-
T Consensus 135 W~~~~~~~-~~~~~~~v~~~~~v~~~s-------~~g~~~al~~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~~vy~~~~ 205 (370)
T COG1520 135 WSRNVGGS-PYYASPPVVGDGTVYVGT-------DDGHLYALNADTGTLKWTYETPAPLS-LSIYGSPAIASGTVYVGSD 205 (370)
T ss_pred EEEecCCC-eEEecCcEEcCcEEEEec-------CCCeEEEEEccCCcEEEEEecCCccc-cccccCceeecceEEEecC
Confidence 86644332 444444555566777653 1235788888755 58853322111 1333333467777776532
Q ss_pred CCCCCCCCCcceEEEEECCCC--cEEe
Q 016877 180 QYGPQCRGPTAHTFVLDTETK--KWQD 204 (381)
Q Consensus 180 ~~~~~~~~~~~~~~~yd~~~~--~W~~ 204 (381)
. . ...++.+|+++. .|+.
T Consensus 206 -~-~-----~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 206 -G-Y-----DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred -C-C-----cceEEEEEccCCcEeeee
Confidence 1 0 126888999754 4874
No 156
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=40.24 E-value=3.3e+02 Score=25.79 Aligned_cols=184 Identities=12% Similarity=0.024 Sum_probs=88.8
Q ss_pred cCEEEEecCCCCCcccceeeeeeCCCce-eeecCCCCCCCceeEEeee----ccccc-------ccccCcceEeecCCCC
Q 016877 33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTK----KDVVP-------KRILPATFQDLPAPEL 100 (381)
Q Consensus 33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~ 100 (381)
++...+++=..+++-...+..+|..++. ..-.-..+... +++-... .|... .......++++...+.
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTP 212 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESE-EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccc-eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCC
Confidence 6666677665555666689999999987 22110111110 0110000 01100 1112334555544443
Q ss_pred CeE--EccCCCCCCC-CceEE-EECC-EEEEEecCCCCCCcccceEEEeCCCC-----eEecCCCCCCCCccceEEEEEe
Q 016877 101 KWE--KMKAAPVPRL-DGAAI-QIKN-LLYVFAGYGSIDYVHSHVDIYNFTDN-----TWGGRFDMPREMAHSHLGMVTD 170 (381)
Q Consensus 101 ~W~--~l~~~p~~r~-~~~~~-~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~-----~W~~~~~~~~~~~r~~~~~~~~ 170 (381)
.-. .+-.-+.... ...+. .-++ .|+|.-.... . .++++..|.... .|..+.+-.. .....+...
T Consensus 213 ~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~-~--~s~v~~~d~~~~~~~~~~~~~l~~~~~---~~~~~v~~~ 286 (414)
T PF02897_consen 213 QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT-S--ESEVYLLDLDDGGSPDAKPKLLSPRED---GVEYYVDHH 286 (414)
T ss_dssp GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS-S--EEEEEEEECCCTTTSS-SEEEEEESSS---S-EEEEEEE
T ss_pred hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc-c--CCeEEEEeccccCCCcCCcEEEeCCCC---ceEEEEEcc
Confidence 321 1111222222 22222 2233 4444333322 1 367999999875 7887754221 223445556
Q ss_pred CCEEEEEcCCCCCCCCCCcceEEEEECCCCc---EE-eCCCCCCCCcccEEEEECCEEEEEc
Q 016877 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK---WQ-DLPPLPVPRYAPATQLWRGRLHVMG 228 (381)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~---W~-~~~~~p~~r~~~~~~~~~~~lyv~G 228 (381)
++.+|+....+.. ...+..+++.+.. |. .+.+-.....--.+...++.|++.-
T Consensus 287 ~~~~yi~Tn~~a~-----~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~ 343 (414)
T PF02897_consen 287 GDRLYILTNDDAP-----NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSY 343 (414)
T ss_dssp TTEEEEEE-TT-T-----T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEE
T ss_pred CCEEEEeeCCCCC-----CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEE
Confidence 9999998763332 4568889888765 66 4433333334445556788888774
No 157
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=38.96 E-value=3.1e+02 Score=25.12 Aligned_cols=56 Identities=16% Similarity=0.301 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCCCCCCCcceEEEEECCCCcE-EeCC---CCC--CCCcccEEEEECCEEEEEc
Q 016877 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW-QDLP---PLP--VPRYAPATQLWRGRLHVMG 228 (381)
Q Consensus 171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W-~~~~---~~p--~~r~~~~~~~~~~~lyv~G 228 (381)
-+.+-++||...+.. +.+.+..+|-...+= .++. +.. .-|..+-++++.++|||+-
T Consensus 58 ~N~laLVGGg~~pky--~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~Vyt 119 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKY--PPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYT 119 (346)
T ss_pred hceEEEecCCCCCCC--CCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEE
Confidence 355666777655443 478899998544321 1111 111 2245567778888888883
No 158
>PRK04043 tolB translocation protein TolB; Provisional
Probab=37.60 E-value=3.8e+02 Score=25.73 Aligned_cols=188 Identities=11% Similarity=0.006 Sum_probs=92.0
Q ss_pred ceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEE
Q 016877 139 HVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ 218 (381)
Q Consensus 139 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 218 (381)
+++++|+.+++=+.+...+.. .......-.+.+|.+.-...+ ..++|.+|..+..++.+.+.+..-......
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~--~~~~~~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~S 285 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGM--LVVSDVSKDGSKLLLTMAPKG------QPDIYLYDTNTKTLTQITNYPGIDVNGNFV 285 (419)
T ss_pred EEEEEECCCCcEEEEecCCCc--EEeeEECCCCCEEEEEEccCC------CcEEEEEECCCCcEEEcccCCCccCccEEC
Confidence 699999998877776553331 111222223446655433222 368999999999998886544311112211
Q ss_pred EECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccc
Q 016877 219 LWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFK 298 (381)
Q Consensus 219 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~ 298 (381)
.-+.+|++.-...+ ..+.|.+ |..+.+.+.+... +... ....-+++.+++-.......
T Consensus 286 PDG~~I~F~Sdr~g-----~~~Iy~~-----dl~~g~~~rlt~~--g~~~-~~~SPDG~~Ia~~~~~~~~~--------- 343 (419)
T PRK04043 286 EDDKRIVFVSDRLG-----YPNIFMK-----KLNSGSVEQVVFH--GKNN-SSVSTYKNYIVYSSRETNNE--------- 343 (419)
T ss_pred CCCCEEEEEECCCC-----CceEEEE-----ECCCCCeEeCccC--CCcC-ceECCCCCEEEEEEcCCCcc---------
Confidence 22445666643321 1234443 2445555443221 1111 22333444333333221100
Q ss_pred cccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCC
Q 016877 299 CSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 373 (381)
Q Consensus 299 ~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~ 373 (381)
......+++.+| ++..++.+.... . .... ....|++.+++-...+.. ..++.++++.+
T Consensus 344 ----~~~~~~~I~v~d~~~g~~~~LT~~~--~-~~~p-~~SPDG~~I~f~~~~~~~---------~~L~~~~l~g~ 402 (419)
T PRK04043 344 ----FGKNTFNLYLISTNSDYIRRLTANG--V-NQFP-RFSSDGGSIMFIKYLGNQ---------SALGIIRLNYN 402 (419)
T ss_pred ----cCCCCcEEEEEECCCCCeEECCCCC--C-cCCe-EECCCCCEEEEEEccCCc---------EEEEEEecCCC
Confidence 000124688888 777888876532 1 1112 255677655554332211 24777777654
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=37.36 E-value=4.1e+02 Score=26.05 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=12.6
Q ss_pred eEEEeCCEEEEEccCCCC
Q 016877 270 ACVVVDDRLLVIGGQEGD 287 (381)
Q Consensus 270 ~~~~~~~~l~v~GG~~~~ 287 (381)
..+-.+..|++-=|++..
T Consensus 215 cfspsne~l~vsVG~Dkk 232 (673)
T KOG4378|consen 215 CFSPSNEALLVSVGYDKK 232 (673)
T ss_pred eecCCccceEEEecccce
Confidence 445567888888887654
No 160
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=36.74 E-value=3e+02 Score=24.36 Aligned_cols=98 Identities=7% Similarity=0.024 Sum_probs=56.3
Q ss_pred cceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877 90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM 167 (381)
Q Consensus 90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~ 167 (381)
+.+..||..++.=.++...-.++..-.++.+ +++....||.++ .+-++|...-.-.+.-..+.|. -++
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg------t~kIWdlR~~~~qR~~~~~spV----n~v 130 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG------TVKIWDLRSLSCQRNYQHNSPV----NTV 130 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc------eEEEEeccCcccchhccCCCCc----ceE
Confidence 3577888877663333334444555555443 678888888764 3566777764444443333332 245
Q ss_pred EEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEe
Q 016877 168 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQD 204 (381)
Q Consensus 168 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~ 204 (381)
+...++-=+|-|- . ...++.+|+.++.-+.
T Consensus 131 vlhpnQteLis~d-q------sg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 131 VLHPNQTELISGD-Q------SGNIRVWDLGENSCTH 160 (311)
T ss_pred EecCCcceEEeec-C------CCcEEEEEccCCcccc
Confidence 5555443334331 1 3458999999886544
No 161
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=36.33 E-value=3.4e+02 Score=24.80 Aligned_cols=161 Identities=10% Similarity=0.019 Sum_probs=67.3
Q ss_pred eEeecCCCCCeEEccC-CCCC-CCCc-eEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCC-CCCCCccceEEE
Q 016877 92 FQDLPAPELKWEKMKA-APVP-RLDG-AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFD-MPREMAHSHLGM 167 (381)
Q Consensus 92 ~~~~~~~~~~W~~l~~-~p~~-r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~~~r~~~~~ 167 (381)
+++-.---.+|+.... .+.+ ..++ ++...++..|++|-. . -+..-.-.-.+|++++- .+.|. ......
T Consensus 39 il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~---g----~ll~T~DgG~tW~~v~l~~~lpg-s~~~i~ 110 (302)
T PF14870_consen 39 ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP---G----LLLHTTDGGKTWERVPLSSKLPG-SPFGIT 110 (302)
T ss_dssp EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET---T----EEEEESSTTSS-EE----TT-SS--EEEEE
T ss_pred EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC---c----eEEEecCCCCCcEEeecCCCCCC-CeeEEE
Confidence 3444444568988753 3332 2233 334457788988732 1 13333335678999852 22221 223344
Q ss_pred EEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEeee
Q 016877 168 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAV 246 (381)
Q Consensus 168 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~ 246 (381)
+..++.++++|.. ..+++=.-.-.+|+.+..-... ....+... ++++++++ ..+ +.|..
T Consensus 111 ~l~~~~~~l~~~~---------G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~vavs-~~G-------~~~~s-- 170 (302)
T PF14870_consen 111 ALGDGSAELAGDR---------GAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYVAVS-SRG-------NFYSS-- 170 (302)
T ss_dssp EEETTEEEEEETT-----------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEE-TTS-------SEEEE--
T ss_pred EcCCCcEEEEcCC---------CcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEEEEE-Ccc-------cEEEE--
Confidence 5567778877642 3356555566789887542222 22223333 45555554 322 12211
Q ss_pred ecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEc
Q 016877 247 KDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIG 282 (381)
Q Consensus 247 ~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~G 282 (381)
.|+....|+........|.......-++.|++..
T Consensus 171 --~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 171 --WDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp --E-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE
T ss_pred --ecCCCccceEEccCccceehhceecCCCCEEEEe
Confidence 1366677887755444444333334467777764
No 162
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=36.03 E-value=3.4e+02 Score=24.71 Aligned_cols=88 Identities=13% Similarity=0.149 Sum_probs=46.9
Q ss_pred cceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEE
Q 016877 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPAT 217 (381)
Q Consensus 138 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 217 (381)
.++-.||...+.-...-....| -..++..+..=.+.||.++ .+-+||..+..=..+..--.+.. ++
T Consensus 35 gslrlYdv~~~~l~~~~~~~~p----lL~c~F~d~~~~~~G~~dg--------~vr~~Dln~~~~~~igth~~~i~--ci 100 (323)
T KOG1036|consen 35 GSLRLYDVPANSLKLKFKHGAP----LLDCAFADESTIVTGGLDG--------QVRRYDLNTGNEDQIGTHDEGIR--CI 100 (323)
T ss_pred CcEEEEeccchhhhhheecCCc----eeeeeccCCceEEEeccCc--------eEEEEEecCCcceeeccCCCceE--EE
Confidence 3577888887732222111122 1344555554455677554 47889999877555543222211 11
Q ss_pred EE-ECCEEEEEccCCCCCCCCCccceEe
Q 016877 218 QL-WRGRLHVMGGSGENRYTPEVDHWSL 244 (381)
Q Consensus 218 ~~-~~~~lyv~GG~~~~~~~~~~~~~~~ 244 (381)
.. .....+|.||++. .+..|+.
T Consensus 101 ~~~~~~~~vIsgsWD~-----~ik~wD~ 123 (323)
T KOG1036|consen 101 EYSYEVGCVISGSWDK-----TIKFWDP 123 (323)
T ss_pred EeeccCCeEEEcccCc-----cEEEEec
Confidence 11 3445677787754 5677763
No 163
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=34.54 E-value=3e+02 Score=27.08 Aligned_cols=87 Identities=8% Similarity=-0.025 Sum_probs=53.8
Q ss_pred CCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCC
Q 016877 133 IDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR 212 (381)
Q Consensus 133 ~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 212 (381)
.+..++.++.+|+.++.=..-+++..-++ -.+...++.+.+++|.++... -.+...|+++-.-..-+.-+..+
T Consensus 370 ~~~~ls~LvllD~~tg~~l~~S~~~~Ir~---r~~~~~~~~~vaI~g~~G~~~----ikLvlid~~tLev~kes~~~i~~ 442 (489)
T PF05262_consen 370 PNHYLSELVLLDSDTGDTLKRSPVNGIRG---RTFYEREDDLVAIAGCSGNAA----IKLVLIDPETLEVKKESEDEISW 442 (489)
T ss_pred CCCcceeEEEEeCCCCceecccccceecc---ceeEEcCCCEEEEeccCCchh----eEEEecCcccceeeeeccccccc
Confidence 34456889999999986666555554322 245567788889998855432 23444577776554444444443
Q ss_pred cccEEEEECCEEEEE
Q 016877 213 YAPATQLWRGRLHVM 227 (381)
Q Consensus 213 ~~~~~~~~~~~lyv~ 227 (381)
.+ .+.+.++.+|++
T Consensus 443 ~S-~l~~~~~~iyaV 456 (489)
T PF05262_consen 443 QS-SLIVDGQMIYAV 456 (489)
T ss_pred cC-ceEEcCCeEEEE
Confidence 33 444557778866
No 164
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=34.38 E-value=3.3e+02 Score=24.03 Aligned_cols=182 Identities=15% Similarity=0.189 Sum_probs=89.8
Q ss_pred CCEEEEEecCCCCCCcccceEEEeC----CCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEE
Q 016877 121 KNLLYVFAGYGSIDYVHSHVDIYNF----TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD 196 (381)
Q Consensus 121 ~~~iyv~GG~~~~~~~~~~~~~yd~----~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd 196 (381)
++++|++.+.+. ..+.-|.. ....|...-.+|.+. .+..-++.++.+|.-.. ....+-+||
T Consensus 30 ~~r~~~~~~~~~-----~~l~E~~~~~~~~~~~~~~~~~lp~~~--~gTg~VVynGs~yynk~--------~t~~ivky~ 94 (249)
T KOG3545|consen 30 DDRIYVMNYFDG-----LMLTEYTNLEDFKRGRKAEKYRLPYSW--DGTGHVVYNGSLYYNKA--------GTRNIIKYD 94 (249)
T ss_pred cCceEEeccccC-----ceEEEeccHHHhhccCcceEEeCCCCc--cccceEEEcceEEeecc--------CCcceEEEE
Confidence 678888844332 22333433 334455544555543 23455677777776532 146688999
Q ss_pred CCCCc---EEeCCCCC------CC---CcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCcc----CCceEEec
Q 016877 197 TETKK---WQDLPPLP------VP---RYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL----EKEWRTEI 260 (381)
Q Consensus 197 ~~~~~---W~~~~~~p------~~---r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~----~~~W~~~~ 260 (381)
.++.. |+.++.+- -. ....-+++-++-|+++=-.. .+.-.+.+..+||. ..+|...-
T Consensus 95 l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~-------~~~g~iv~skLdp~tl~~e~tW~T~~ 167 (249)
T KOG3545|consen 95 LETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATP-------ENAGTIVLSKLDPETLEVERTWNTTL 167 (249)
T ss_pred eecceeeeeeeccccccCCCcccccCCCccccceecccceeEEeccc-------ccCCcEEeeccCHHHhheeeeecccc
Confidence 98843 44444221 11 11112334444566552211 11122334455553 34674432
Q ss_pred CCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCce-eEeC-CCCCeEEcCCCCCCCCCcceEEEE
Q 016877 261 PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDV-YMLD-DEMKWKVLPSMPKPDSHIEFAWVL 338 (381)
Q Consensus 261 ~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~yd-~~~~W~~i~~~~~~~~~~~~~~~~ 338 (381)
+.+... .+.++=+.||++-...... ..| |.|| .+++= .-..+|.+.....++++-
T Consensus 168 ~k~~~~---~aF~iCGvLY~v~S~~~~~-------------------~~i~yaydt~~~~~-~~~~ipf~N~y~~~~~id 224 (249)
T KOG3545|consen 168 PKRSAG---NAFMICGVLYVVHSYNCTH-------------------TQISYAYDTTTGTQ-ERIDLPFPNPYSYATMID 224 (249)
T ss_pred CCCCcC---ceEEEeeeeEEEeccccCC-------------------ceEEEEEEcCCCce-ecccccccchhhhhhccC
Confidence 222222 3445556788887765432 123 7887 54543 333555555443344343
Q ss_pred E---CCEEEEEc
Q 016877 339 V---NNSIVIVG 347 (381)
Q Consensus 339 ~---~~~l~v~G 347 (381)
+ |.+||+.-
T Consensus 225 YNP~D~~LY~wd 236 (249)
T KOG3545|consen 225 YNPRDRRLYAWD 236 (249)
T ss_pred CCcccceeeEec
Confidence 3 57888874
No 165
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=33.99 E-value=4e+02 Score=24.95 Aligned_cols=70 Identities=10% Similarity=0.006 Sum_probs=36.6
Q ss_pred cCEEEEecCC----CCCcccceeeeeeCCCce--eeecC-CCCCCC-------ceeEEeee-cccccccccCcceEeecC
Q 016877 33 ADFFWASSSK----FTSSYLNIASNWSPYHNS--IILPN-NGPQKG-------ENIGVKTK-KDVVPKRILPATFQDLPA 97 (381)
Q Consensus 33 ~~~ly~~GG~----~~~~~~~~~~~~d~~~~~--~~~p~-~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~ 97 (381)
+..||+.-.. .-+...+.++.||+++.+ ..++. ..||.. +.+..-++ .+.... .-.+.+...|.
T Consensus 57 g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~ 135 (352)
T TIGR02658 57 GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDL 135 (352)
T ss_pred CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-CCCCEEEEEEC
Confidence 4578888761 111123578999999998 44544 444422 22222222 222111 11345677787
Q ss_pred CCCCeE
Q 016877 98 PELKWE 103 (381)
Q Consensus 98 ~~~~W~ 103 (381)
.+.+-.
T Consensus 136 ~~~kvv 141 (352)
T TIGR02658 136 EGKAFV 141 (352)
T ss_pred CCCcEE
Confidence 776643
No 166
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=33.50 E-value=2.7e+02 Score=25.10 Aligned_cols=129 Identities=15% Similarity=0.187 Sum_probs=70.5
Q ss_pred eEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEE-EECCEEEEE
Q 016877 149 TWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ-LWRGRLHVM 227 (381)
Q Consensus 149 ~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~ 227 (381)
-|..+. +|...+....+.+..+++.+++|+. ..+..=|-.-++|++.-. +..|+.+..+ +++.+=++.
T Consensus 33 p~~~ve-lp~~s~~l~ia~~~~g~~gwlVg~r---------gtiletdd~g~tw~qal~-~~gr~~f~sv~f~~~egw~v 101 (339)
T COG4447 33 PWTDVE-LPTLSPTLDIAFTESGSHGWLVGGR---------GTILETDDGGITWAQALD-FLGRHAFHSVSFLGMEGWIV 101 (339)
T ss_pred cceeee-ccccCcccceeEeecCcceEEEcCc---------ceEEEecCCcccchhhhc-hhhhhheeeeeeeccccccc
Confidence 455542 3332234456677788999999983 335566677888987653 2324444444 445445555
Q ss_pred ccCCCCCCCCCccceEeeeecCCccCCceEEecC-CCCCCcceeEEEeCCE-EEEEccCCCCCCCCCCCCccccccCcee
Q 016877 228 GGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP-IPRGGPHRACVVVDDR-LLVIGGQEGDFMAKPGSPIFKCSRRNEV 305 (381)
Q Consensus 228 GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-~p~~~~~~~~~~~~~~-l~v~GG~~~~~~~~~~~~~~~~~~~~~~ 305 (381)
|- ....|.. +..-.+|..++. ..+.....++..++++ -+++|-+.
T Consensus 102 Ge--------~sqll~T-----~DgGqsWARi~~~e~~eg~~~sI~f~d~q~g~m~gd~G-------------------- 148 (339)
T COG4447 102 GE--------PSQLLHT-----TDGGQSWARIPLSEKLEGFPDSITFLDDQRGEMLGDQG-------------------- 148 (339)
T ss_pred CC--------cceEEEe-----cCCCcchhhchhhcCCCCCcceeEEecchhhhhhcccc--------------------
Confidence 42 1122322 244667876642 3334444466666555 45554321
Q ss_pred ecCceeEeC-CCCCeEEcCC
Q 016877 306 VYDDVYMLD-DEMKWKVLPS 324 (381)
Q Consensus 306 ~~~~v~~yd-~~~~W~~i~~ 324 (381)
.||.-+ ..+.|+.+-+
T Consensus 149 ---ail~T~DgGk~Wk~l~e 165 (339)
T COG4447 149 ---AILKTTDGGKNWKALVE 165 (339)
T ss_pred ---eEEEecCCcccHhHhcc
Confidence 266655 6778987643
No 167
>PRK03629 tolB translocation protein TolB; Provisional
Probab=32.60 E-value=4.5e+02 Score=25.18 Aligned_cols=170 Identities=8% Similarity=-0.004 Sum_probs=79.4
Q ss_pred ceEeecCCCCCeEEccCCCCCCCCceEEEECC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169 (381)
Q Consensus 91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~ 169 (381)
.++.++..+.+-+.+...+..-. .....-++ +|++....++ ..+++.+|.++.+.+++..-... .......-
T Consensus 224 ~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~--~~~~~wSP 296 (429)
T PRK03629 224 ALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSN--NTEPTWFP 296 (429)
T ss_pred EEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCC--cCceEECC
Confidence 56777777766566654432211 11222344 5555433221 13599999999888776543321 11122222
Q ss_pred eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecC
Q 016877 170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDG 249 (381)
Q Consensus 170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~ 249 (381)
.++.|+......+ ..++|.+|+.+..-+.+..... ........-+++.+++...... ..+.|. +
T Consensus 297 DG~~I~f~s~~~g------~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g----~~~I~~-----~ 360 (429)
T PRK03629 297 DSQNLAYTSDQAG------RPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG----QQHIAK-----Q 360 (429)
T ss_pred CCCEEEEEeCCCC------CceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC----CceEEE-----E
Confidence 2344544332111 3578999998876665532211 1112222334554444333221 112222 2
Q ss_pred CccCCceEEecCCCCCCcceeEEEeCCEEEEEccCC
Q 016877 250 KPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQE 285 (381)
Q Consensus 250 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~ 285 (381)
|..+.+++.+....... . -...-+++.+++.+..
T Consensus 361 dl~~g~~~~Lt~~~~~~-~-p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 361 DLATGGVQVLTDTFLDE-T-PSIAPNGTMVIYSSSQ 394 (429)
T ss_pred ECCCCCeEEeCCCCCCC-C-ceECCCCCEEEEEEcC
Confidence 35566666654321111 1 2234566666666554
No 168
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=32.36 E-value=3.7e+02 Score=24.09 Aligned_cols=108 Identities=10% Similarity=0.027 Sum_probs=49.0
Q ss_pred CCCCCCceEEEECC--EEEEEecCCCCCCcccceEEEeCCCCeEe-cCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCC
Q 016877 109 PVPRLDGAAIQIKN--LLYVFAGYGSIDYVHSHVDIYNFTDNTWG-GRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQC 185 (381)
Q Consensus 109 p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 185 (381)
|.+-.....+.++. +.+|.|+.++ ++-.||.+++.=. .-..... ..-.--.-.-+...||-|-.+..
T Consensus 144 ~t~~skit~a~Wg~l~~~ii~Ghe~G------~is~~da~~g~~~v~s~~~h~--~~Ind~q~s~d~T~FiT~s~Dtt-- 213 (327)
T KOG0643|consen 144 PTPDSKITSALWGPLGETIIAGHEDG------SISIYDARTGKELVDSDEEHS--SKINDLQFSRDRTYFITGSKDTT-- 213 (327)
T ss_pred cCCccceeeeeecccCCEEEEecCCC------cEEEEEcccCceeeechhhhc--cccccccccCCcceEEecccCcc--
Confidence 44445556666653 5666666543 4678888875322 1111111 00000011123445666544332
Q ss_pred CCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCC
Q 016877 186 RGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGE 232 (381)
Q Consensus 186 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~ 232 (381)
.-.+|..+-+-.+.=.--.|....++....+.+.+-||.+.
T Consensus 214 ------akl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 214 ------AKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred ------ceeeeccceeeEEEeeecccccceecccccceEEecCCcee
Confidence 22344443322211111123333344457788888888764
No 169
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.28 E-value=4e+02 Score=24.40 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=14.4
Q ss_pred ceEEEEcCCCceEEeecC
Q 016877 364 EIFQFNLNTLVAVLNAML 381 (381)
Q Consensus 364 ~v~~yd~~~~~W~~i~~l 381 (381)
.||.|+...++|..+++|
T Consensus 202 ~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 202 KIYEYNENGRKWLKVAEL 219 (361)
T ss_pred EEEEecCCcceeeeehhc
Confidence 477788777889999876
No 170
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=30.30 E-value=5.4e+02 Score=25.32 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=52.4
Q ss_pred eEcCEEEEecCCCCCcccceeeeeeCCCce----eeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEcc
Q 016877 31 LVADFFWASSSKFTSSYLNIASNWSPYHNS----IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMK 106 (381)
Q Consensus 31 ~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~ 106 (381)
.-++.-.++|| ..+++..||+.+.+ ..+++..+. .+.++..-...+.-.-..+..+..+|..+++- +.
T Consensus 474 ~pdgrtLivGG-----eastlsiWDLAapTprikaeltssapa-CyALa~spDakvcFsccsdGnI~vwDLhnq~~--Vr 545 (705)
T KOG0639|consen 474 LPDGRTLIVGG-----EASTLSIWDLAAPTPRIKAELTSSAPA-CYALAISPDAKVCFSCCSDGNIAVWDLHNQTL--VR 545 (705)
T ss_pred cCCCceEEecc-----ccceeeeeeccCCCcchhhhcCCcchh-hhhhhcCCccceeeeeccCCcEEEEEccccee--ee
Confidence 34777788888 45688999998877 344442211 12221111100000011223455666666542 23
Q ss_pred CCCCCCCCceEEEEC--CEEEEEecCCCCCCcccceEEEeCCCC
Q 016877 107 AAPVPRLDGAAIQIK--NLLYVFAGYGSIDYVHSHVDIYNFTDN 148 (381)
Q Consensus 107 ~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~yd~~~~ 148 (381)
.++-.--+.++..+. +.=+-.||.+ +.+-++|..+.
T Consensus 546 qfqGhtDGascIdis~dGtklWTGGlD------ntvRcWDlreg 583 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDGTKLWTGGLD------NTVRCWDLREG 583 (705)
T ss_pred cccCCCCCceeEEecCCCceeecCCCc------cceeehhhhhh
Confidence 344444455555553 4444467765 34666776654
No 171
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.37 E-value=4e+02 Score=23.56 Aligned_cols=75 Identities=12% Similarity=0.239 Sum_probs=42.9
Q ss_pred CCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEec--CCCCCCCCccceEEEEEeCCEEEEEcCCCCCCC
Q 016877 108 APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG--RFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQC 185 (381)
Q Consensus 108 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~--~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 185 (381)
+..++...+.+..++.+++. .-+.+.++|+. +.++|.+ -++.+-...++.+=|-||
T Consensus 219 ~gl~~s~iAS~SqDg~viIw--------------t~~~e~e~wk~tll~~f~~~--~w~vSWS~sGn~LaVs~G------ 276 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDGTVIIW--------------TKDEEYEPWKKTLLEEFPDV--VWRVSWSLSGNILAVSGG------ 276 (299)
T ss_pred cCCCceeeEEecCCCcEEEE--------------EecCccCcccccccccCCcc--eEEEEEeccccEEEEecC------
Confidence 33556556666666665544 33445567776 3445553 344445555665555555
Q ss_pred CCCcceEEEEECCCC-cEEeCCC
Q 016877 186 RGPTAHTFVLDTETK-KWQDLPP 207 (381)
Q Consensus 186 ~~~~~~~~~yd~~~~-~W~~~~~ 207 (381)
.|.+.++-...+ +|.++..
T Consensus 277 ---dNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 277 ---DNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ---CcEEEEEEeCCCCcEEEccc
Confidence 355677766654 8988763
No 172
>PTZ00421 coronin; Provisional
Probab=29.18 E-value=5.7e+02 Score=25.22 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=15.4
Q ss_pred CEEEEecCCCCCcccceeeeeeCCCce
Q 016877 34 DFFWASSSKFTSSYLNIASNWSPYHNS 60 (381)
Q Consensus 34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~ 60 (381)
+.+.+.|+.++ .+..||..+++
T Consensus 138 ~~iLaSgs~Dg-----tVrIWDl~tg~ 159 (493)
T PTZ00421 138 MNVLASAGADM-----VVNVWDVERGK 159 (493)
T ss_pred CCEEEEEeCCC-----EEEEEECCCCe
Confidence 35666776554 67889988876
No 173
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=28.69 E-value=4.8e+02 Score=24.26 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=52.5
Q ss_pred EEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEE
Q 016877 117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFV 194 (381)
Q Consensus 117 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 194 (381)
.+..++++|+.. .+ ..+..+|+.+.+ |..-..... ..........+++||+-.. + ..+++
T Consensus 64 ~~~~dg~v~~~~-~~------G~i~A~d~~~g~~~W~~~~~~~~--~~~~~~~~~~~G~i~~g~~-~--------g~~y~ 125 (370)
T COG1520 64 PADGDGTVYVGT-RD------GNIFALNPDTGLVKWSYPLLGAV--AQLSGPILGSDGKIYVGSW-D--------GKLYA 125 (370)
T ss_pred cEeeCCeEEEec-CC------CcEEEEeCCCCcEEecccCcCcc--eeccCceEEeCCeEEEecc-c--------ceEEE
Confidence 366788999871 11 158999999886 876432100 0111122333788776432 2 25889
Q ss_pred EECC--CCcEEeCCCCCCCCcccEEEEECCEEEEE
Q 016877 195 LDTE--TKKWQDLPPLPVPRYAPATQLWRGRLHVM 227 (381)
Q Consensus 195 yd~~--~~~W~~~~~~p~~r~~~~~~~~~~~lyv~ 227 (381)
||.. +..|+.-.+.. ++.....++.++.+|+.
T Consensus 126 ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~ 159 (370)
T COG1520 126 LDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVG 159 (370)
T ss_pred EECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEe
Confidence 9985 45687654432 44444445566667766
No 174
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=28.65 E-value=6.9e+02 Score=26.01 Aligned_cols=130 Identities=12% Similarity=0.036 Sum_probs=64.9
Q ss_pred ceEeecCCCCCeEEccCCCCCCCCceEEE--ECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEE
Q 016877 91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQ--IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV 168 (381)
Q Consensus 91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~ 168 (381)
.+-.+|..+.-.. ..+.++-..++++. ..++..+..-.++ +|-++|++.- +....+..|.++ .++++
T Consensus 373 KVKvWn~~SgfC~--vTFteHts~Vt~v~f~~~g~~llssSLDG------tVRAwDlkRY--rNfRTft~P~p~-Qfscv 441 (893)
T KOG0291|consen 373 KVKVWNTQSGFCF--VTFTEHTSGVTAVQFTARGNVLLSSSLDG------TVRAWDLKRY--RNFRTFTSPEPI-QFSCV 441 (893)
T ss_pred cEEEEeccCceEE--EEeccCCCceEEEEEEecCCEEEEeecCC------eEEeeeeccc--ceeeeecCCCce-eeeEE
Confidence 3445554443221 12334444444432 2445555443332 4666777533 333333334333 44555
Q ss_pred EeC--CEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCC-CCCcccEEEEECCEEEEEccCCCCCCCCCccceEe
Q 016877 169 TDG--RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL 244 (381)
Q Consensus 169 ~~~--~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 244 (381)
.++ |.+.++|+.+. -++++++.+|.+--.+-.-. -|....+ ....+.+++-|.+ +..+..|++
T Consensus 442 avD~sGelV~AG~~d~-------F~IfvWS~qTGqllDiLsGHEgPVs~l~-f~~~~~~LaS~SW-----DkTVRiW~i 507 (893)
T KOG0291|consen 442 AVDPSGELVCAGAQDS-------FEIFVWSVQTGQLLDILSGHEGPVSGLS-FSPDGSLLASGSW-----DKTVRIWDI 507 (893)
T ss_pred EEcCCCCEEEeeccce-------EEEEEEEeecCeeeehhcCCCCcceeeE-EccccCeEEeccc-----cceEEEEEe
Confidence 555 88888887543 56888888888654432111 1222111 2234456666554 446778876
No 175
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=28.51 E-value=3.2e+02 Score=22.05 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=46.2
Q ss_pred EEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCc----ccEEEEE-CCEEEEEccCCCCCCCCCccce
Q 016877 168 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRY----APATQLW-RGRLHVMGGSGENRYTPEVDHW 242 (381)
Q Consensus 168 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 242 (381)
+.++|.+|=+.-...... ...+..||..+.+.+...++|.... ...+.++ +++|-++--.. .....+.|
T Consensus 2 V~vnG~~hW~~~~~~~~~---~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~---~~~~~~IW 75 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE---KDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCD---ETSKIEIW 75 (164)
T ss_pred EEECCEEEeeEEecCCCC---ceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEecc---CCccEEEE
Confidence 456777776654322211 1268999999999933334443322 2233233 66777663211 12347788
Q ss_pred EeeeecCCccCCceEEe
Q 016877 243 SLAVKDGKPLEKEWRTE 259 (381)
Q Consensus 243 ~~~~~~~~~~~~~W~~~ 259 (381)
.+.-+.+. ...|++.
T Consensus 76 vm~~~~~~--~~SWtK~ 90 (164)
T PF07734_consen 76 VMKKYGYG--KESWTKL 90 (164)
T ss_pred EEeeeccC--cceEEEE
Confidence 77633332 7899886
No 176
>PRK02888 nitrous-oxide reductase; Validated
Probab=28.44 E-value=6.5e+02 Score=25.68 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=31.0
Q ss_pred eeEeC-CC---CCeEEcCCCCCCCCCcceEEEEEC-CEEEEEcccccccCCceeeeeecceEEEEcCC
Q 016877 310 VYMLD-DE---MKWKVLPSMPKPDSHIEFAWVLVN-NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT 372 (381)
Q Consensus 310 v~~yd-~~---~~W~~i~~~~~~~~~~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~ 372 (381)
|-..| .+ ..+..+..+|.+..-|++. +..| ..+|+.|+.+ +++-++|+++
T Consensus 298 V~VID~~t~~~~~~~v~~yIPVGKsPHGV~-vSPDGkylyVanklS------------~tVSVIDv~k 352 (635)
T PRK02888 298 VPVVDGRKAANAGSALTRYVPVPKNPHGVN-TSPDGKYFIANGKLS------------PTVTVIDVRK 352 (635)
T ss_pred EEEEECCccccCCcceEEEEECCCCccceE-ECCCCCEEEEeCCCC------------CcEEEEEChh
Confidence 55666 33 1356666678888878776 4445 5577776644 3467777765
No 177
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=28.42 E-value=5.5e+02 Score=24.80 Aligned_cols=30 Identities=7% Similarity=-0.037 Sum_probs=22.6
Q ss_pred HhhheeEcCEEEEecCCCCCcccceeeeeeCCCce
Q 016877 26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNS 60 (381)
Q Consensus 26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~ 60 (381)
+.-++.-+++.+++||.+. -++.||+.+..
T Consensus 206 l~~avS~Dgkylatgg~d~-----~v~Iw~~~t~e 235 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDR-----HVQIWDCDTLE 235 (479)
T ss_pred EEEEEcCCCcEEEecCCCc-----eEEEecCcccc
Confidence 4445566999999998554 56889998876
No 178
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=28.41 E-value=4.1e+02 Score=23.36 Aligned_cols=132 Identities=9% Similarity=0.044 Sum_probs=71.6
Q ss_pred eeeeeeCCCce-eeecCCCCCCCceeEEeee--cccccccccCcceEeecCCCCCeEEccCCCCCCCCceEEEECC--EE
Q 016877 50 IASNWSPYHNS-IILPNNGPQKGENIGVKTK--KDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKN--LL 124 (381)
Q Consensus 50 ~~~~~d~~~~~-~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~--~i 124 (381)
++-.|||..+. +.-=..+.+.-..+..... ....|+ -...+..+|..+.+-.+ .+...-..-.++.+++ .+
T Consensus 40 tvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~G--gDk~v~vwDV~TGkv~R--r~rgH~aqVNtV~fNeesSV 115 (307)
T KOG0316|consen 40 TVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCG--GDKAVQVWDVNTGKVDR--RFRGHLAQVNTVRFNEESSV 115 (307)
T ss_pred eEEeecccccceeeeecCCCceeeeccccccccccccCC--CCceEEEEEcccCeeee--ecccccceeeEEEecCcceE
Confidence 67889998887 3322222222222221111 112222 23357777877765211 0111111122344444 57
Q ss_pred EEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCc
Q 016877 125 YVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK 201 (381)
Q Consensus 125 yv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~ 201 (381)
.+-|+.+ .++-++|..+++-+++..+.. ++-....+.+.+...+.|..++ .+-.||....+
T Consensus 116 v~SgsfD------~s~r~wDCRS~s~ePiQilde--a~D~V~Si~v~~heIvaGS~DG--------tvRtydiR~G~ 176 (307)
T KOG0316|consen 116 VASGSFD------SSVRLWDCRSRSFEPIQILDE--AKDGVSSIDVAEHEIVAGSVDG--------TVRTYDIRKGT 176 (307)
T ss_pred EEecccc------ceeEEEEcccCCCCccchhhh--hcCceeEEEecccEEEeeccCC--------cEEEEEeecce
Confidence 7777665 458889999998888766655 3555666667777666665554 25678887654
No 179
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=28.07 E-value=3.6e+02 Score=22.55 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=46.3
Q ss_pred CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK 200 (381)
Q Consensus 121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~ 200 (381)
++++.|+-|..+ ..+..||.+.. .+..++.. .+ ....-.-++++.++||..+. ..++..||..+
T Consensus 71 g~~favi~g~~~-----~~v~lyd~~~~---~i~~~~~~-~~-n~i~wsP~G~~l~~~g~~n~-----~G~l~~wd~~~- 134 (194)
T PF08662_consen 71 GNEFAVIYGSMP-----AKVTLYDVKGK---KIFSFGTQ-PR-NTISWSPDGRFLVLAGFGNL-----NGDLEFWDVRK- 134 (194)
T ss_pred CCEEEEEEccCC-----cccEEEcCccc---EeEeecCC-Cc-eEEEECCCCCEEEEEEccCC-----CcEEEEEECCC-
Confidence 446766655322 25888998633 33333321 12 22222245677788876442 24588999984
Q ss_pred cEEeCCCCCCCCcccEEEEECCEEEEEc
Q 016877 201 KWQDLPPLPVPRYAPATQLWRGRLHVMG 228 (381)
Q Consensus 201 ~W~~~~~~p~~r~~~~~~~~~~~lyv~G 228 (381)
++.+.....+........-+++.++..
T Consensus 135 -~~~i~~~~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 135 -KKKISTFEHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred -CEEeeccccCcEEEEEEcCCCCEEEEE
Confidence 445554443333222223355555543
No 180
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.65 E-value=4.8e+02 Score=23.85 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=44.4
Q ss_pred CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK 200 (381)
Q Consensus 121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~ 200 (381)
+++|++.-+..-.+ + -+|..|.++..-+.+.+-|.+ -.+.+.+..+|-+ ..-. .-.+.+.+||+.++
T Consensus 117 ~D~LLlAR~DGh~n--L-Gvy~ldr~~g~~~~L~~~ps~-----KG~~~~D~a~F~i--~~~~---~g~~~i~~~Dli~~ 183 (339)
T PF09910_consen 117 EDRLLLARADGHAN--L-GVYSLDRRTGKAEKLSSNPSL-----KGTLVHDYACFGI--NNFH---KGVSGIHCLDLISG 183 (339)
T ss_pred cCEEEEEecCCcce--e-eeEEEcccCCceeeccCCCCc-----CceEeeeeEEEec--cccc---cCCceEEEEEccCC
Confidence 55777765432222 2 389999999988888766653 2344555555533 1111 22688999999999
Q ss_pred cE
Q 016877 201 KW 202 (381)
Q Consensus 201 ~W 202 (381)
+|
T Consensus 184 ~~ 185 (339)
T PF09910_consen 184 KW 185 (339)
T ss_pred eE
Confidence 99
No 181
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=26.11 E-value=2.2e+02 Score=26.09 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred EEEccCCCCCCCCCCCCccccccCceeecCceeEeC--CCC-------CeEEcCCCCCCCCCcceEEEEECCEEEEEccc
Q 016877 279 LVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD--DEM-------KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGT 349 (381)
Q Consensus 279 ~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd--~~~-------~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~ 349 (381)
+|+|-|..- +|.|+ .++ +|+-.+-...+---...+++.+++..++-||.
T Consensus 4 iIvGtYE~~----------------------i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGss 61 (362)
T KOG0294|consen 4 IIVGTYEHV----------------------ILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSS 61 (362)
T ss_pred EEEeeeeeE----------------------EEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCC
Q ss_pred ccccCCceeeeeecceEEEEcCCCc
Q 016877 350 TEKHPTTKKMVLVGEIFQFNLNTLV 374 (381)
Q Consensus 350 ~~~~~~~~~~~~~~~v~~yd~~~~~ 374 (381)
++. |.+||..+..
T Consensus 62 Det------------I~IYDm~k~~ 74 (362)
T KOG0294|consen 62 DET------------IHIYDMRKRK 74 (362)
T ss_pred CCc------------EEEEeccchh
No 182
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=25.25 E-value=2.3e+02 Score=25.90 Aligned_cols=58 Identities=21% Similarity=0.162 Sum_probs=35.1
Q ss_pred CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCC----ccceEEEEEeCCEEEEEc
Q 016877 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM----AHSHLGMVTDGRYIYVVT 178 (381)
Q Consensus 121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~----~r~~~~~~~~~~~iyv~G 178 (381)
-+.+-++||.....+..+.+.++|-..++-..-..+..|. -|..+-+++..++|||+-
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~Vyt 119 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYT 119 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEE
Confidence 3567778887767777778999984443322111111111 144567888899998874
No 183
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=24.26 E-value=5.8e+02 Score=23.70 Aligned_cols=63 Identities=16% Similarity=0.311 Sum_probs=36.3
Q ss_pred ccceEEEeCCCCeEecCCCC--CC-CCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC
Q 016877 137 HSHVDIYNFTDNTWGGRFDM--PR-EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP 206 (381)
Q Consensus 137 ~~~~~~yd~~~~~W~~~~~~--~~-~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~ 206 (381)
.+.+..|++..+.-+...+. +. .-+| +...--.+...|++.=.+ ..=.++.||+...+.++++
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPR-Hi~FHpn~k~aY~v~EL~------stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPR-HIVFHPNGKYAYLVNELN------STVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcc-eEEEcCCCcEEEEEeccC------CEEEEEEEcCCCceEEEee
Confidence 35688888887766554322 11 1113 222222345688885322 2456788888878877775
No 184
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=24.03 E-value=6.2e+02 Score=24.63 Aligned_cols=22 Identities=5% Similarity=0.342 Sum_probs=15.9
Q ss_pred CEEEEEecCCCCCCcccceEEEeCCCCe
Q 016877 122 NLLYVFAGYGSIDYVHSHVDIYNFTDNT 149 (381)
Q Consensus 122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 149 (381)
..+|++||.+. .+-.+|..+++
T Consensus 312 ~n~fl~G~sd~------ki~~wDiRs~k 333 (503)
T KOG0282|consen 312 QNIFLVGGSDK------KIRQWDIRSGK 333 (503)
T ss_pred CcEEEEecCCC------cEEEEeccchH
Confidence 48999999763 46667777665
No 185
>PTZ00420 coronin; Provisional
Probab=23.49 E-value=7.7e+02 Score=24.86 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=15.4
Q ss_pred CEEEEecCCCCCcccceeeeeeCCCce
Q 016877 34 DFFWASSSKFTSSYLNIASNWSPYHNS 60 (381)
Q Consensus 34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~ 60 (381)
..+.+.||.++ .+..||..+.+
T Consensus 138 ~~iLaSgS~Dg-----tIrIWDl~tg~ 159 (568)
T PTZ00420 138 YYIMCSSGFDS-----FVNIWDIENEK 159 (568)
T ss_pred CeEEEEEeCCC-----eEEEEECCCCc
Confidence 34556666554 67889998876
No 186
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=23.32 E-value=3.8e+02 Score=25.22 Aligned_cols=157 Identities=14% Similarity=0.060 Sum_probs=74.2
Q ss_pred HhhheeE---cCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEe-eecccccccccCcceEeecCCC
Q 016877 26 ILGFALV---ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVK-TKKDVVPKRILPATFQDLPAPE 99 (381)
Q Consensus 26 ~~~~~~~---~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 99 (381)
.|+...+ +.++|+.+ .++ .+..+|+.+.+ ..++... ...+++.. .+.+.......+..+..+|..+
T Consensus 38 ~h~~~~~s~Dgr~~yv~~-rdg-----~vsviD~~~~~~v~~i~~G~--~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 38 PHAGLKFSPDGRYLYVAN-RDG-----TVSVIDLATGKVVATIKVGG--NPRGIAVSPDGKYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp EEEEEE-TT-SSEEEEEE-TTS-----EEEEEETTSSSEEEEEE-SS--EEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred ceeEEEecCCCCEEEEEc-CCC-----eEEEEECCcccEEEEEecCC--CcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence 3654443 46799986 333 68999999998 4554422 22333322 2233444445666788888877
Q ss_pred CCeEE-cc--CC----CCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCC
Q 016877 100 LKWEK-MK--AA----PVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGR 172 (381)
Q Consensus 100 ~~W~~-l~--~~----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~ 172 (381)
.+=.+ ++ .+ +.+|...-.+...+..||+--.+ ...++..|.....=.....+.. .+..|-.....+
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-----~~~I~vVdy~d~~~~~~~~i~~--g~~~~D~~~dpd 182 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-----TGEIWVVDYSDPKNLKVTTIKV--GRFPHDGGFDPD 182 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----TTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TT
T ss_pred ccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----CCeEEEEEeccccccceeeecc--cccccccccCcc
Confidence 64322 21 12 22343222233455556665332 2457888865432111111112 244444444433
Q ss_pred EEEEEcCCCCCCCCCCcceEEEEECCCCcEE
Q 016877 173 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQ 203 (381)
Q Consensus 173 ~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~ 203 (381)
.=|++.+.. ..+.+-..|.++.+-.
T Consensus 183 gry~~va~~------~sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 183 GRYFLVAAN------GSNKIAVIDTKTGKLV 207 (369)
T ss_dssp SSEEEEEEG------GGTEEEEEETTTTEEE
T ss_pred cceeeeccc------ccceeEEEeeccceEE
Confidence 222222222 2567888998887643
No 187
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=22.27 E-value=7.7e+02 Score=24.39 Aligned_cols=119 Identities=17% Similarity=0.287 Sum_probs=61.4
Q ss_pred CCCCcccEEEEE--CCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCC-----CCCCcceeEE--EeCCEEE
Q 016877 209 PVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPI-----PRGGPHRACV--VVDDRLL 279 (381)
Q Consensus 209 p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~-----p~~~~~~~~~--~~~~~l~ 279 (381)
...|...+.|.+ ++++ |.+|+.+ .+++.|+ ...|..-+.+ ......-+++ ..+++++
T Consensus 314 ~g~Rv~~tsC~~nrdg~~-iAagc~D----GSIQ~W~---------~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKL-IAAGCLD----GSIQIWD---------KGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred CCcccCceeeecCCCcch-hhhcccC----Cceeeee---------cCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 345555566654 4556 5666543 3677776 2444432222 1121122343 3477777
Q ss_pred EEccCCCCCCCCCCCCccccccCceeecCceeEeC----CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCC
Q 016877 280 VIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD----DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPT 355 (381)
Q Consensus 280 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd----~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~ 355 (381)
+--|.+.. -.+|++. .-+.|+-++.+ .+... ++...+.+|++.|-....+..
T Consensus 380 lSRg~D~t--------------------LKvWDLrq~kkpL~~~tgL~t~-~~~td---c~FSPd~kli~TGtS~~~~~~ 435 (641)
T KOG0772|consen 380 LSRGFDDT--------------------LKVWDLRQFKKPLNVRTGLPTP-FPGTD---CCFSPDDKLILTGTSAPNGMT 435 (641)
T ss_pred hhccCCCc--------------------eeeeeccccccchhhhcCCCcc-CCCCc---cccCCCceEEEecccccCCCC
Confidence 76665532 2466664 23567766553 22222 346789999999865443321
Q ss_pred ceeeeeecceEEEEcC
Q 016877 356 TKKMVLVGEIFQFNLN 371 (381)
Q Consensus 356 ~~~~~~~~~v~~yd~~ 371 (381)
...++.||..
T Consensus 436 ------~g~L~f~d~~ 445 (641)
T KOG0772|consen 436 ------AGTLFFFDRM 445 (641)
T ss_pred ------CceEEEEecc
Confidence 1236666653
No 188
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=22.17 E-value=1.6e+02 Score=25.88 Aligned_cols=76 Identities=11% Similarity=0.085 Sum_probs=0.0
Q ss_pred CCeEEcc--CCCCCCCCceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCC---ccceEEEEEeCCE
Q 016877 100 LKWEKMK--AAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM---AHSHLGMVTDGRY 173 (381)
Q Consensus 100 ~~W~~l~--~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~---~r~~~~~~~~~~~ 173 (381)
.+|++.. .+|.+.....++.+ ++.++++.........+. +..-.-...+|.....+.... ..+...+..-+++
T Consensus 194 ~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~-l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~ 272 (275)
T PF13088_consen 194 RTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLS-LYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGK 272 (275)
T ss_dssp SS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEE-EEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTE
T ss_pred CcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceE-EEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCc
Q ss_pred EEE
Q 016877 174 IYV 176 (381)
Q Consensus 174 iyv 176 (381)
|||
T Consensus 273 l~i 275 (275)
T PF13088_consen 273 LYI 275 (275)
T ss_dssp EEE
T ss_pred CCC
No 189
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=22.08 E-value=7e+02 Score=23.86 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=72.7
Q ss_pred EEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEE-EECCEEEEEccCCCCCCCCCccce
Q 016877 165 LGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ-LWRGRLHVMGGSGENRYTPEVDHW 242 (381)
Q Consensus 165 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~ 242 (381)
+.++. .+|.+...||.+..+. ++|..+..=...=.- .-+.-+++. .-+|..+.-||.+ +...+|
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~R--------vWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~D-----nt~kVW 372 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLGR--------VWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSD-----NTCKVW 372 (459)
T ss_pred ceeEecCCCceeeccCccchhh--------eeecccCcEEEEecc-cccceeeEeECCCceEEeecCCC-----CcEEEe
Confidence 33443 5788999999776432 345554432111100 112222332 2367777777654 357788
Q ss_pred EeeeecCCccCCceEEecCCCCCCcceeEEE---eCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeCCCCCe
Q 016877 243 SLAVKDGKPLEKEWRTEIPIPRGGPHRACVV---VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKW 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~---~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W 319 (381)
++..-+ .+-.+|....-.+-|- ..++.++-.+++.. +-.+ .+..|
T Consensus 373 DLR~r~---------~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t----------------------~kiW-s~~~~ 420 (459)
T KOG0272|consen 373 DLRMRS---------ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT----------------------VKIW-STRTW 420 (459)
T ss_pred eecccc---------cceecccccchhhheEecccCCeEEEEcccCcc----------------------eeee-cCCCc
Confidence 874111 1223333222112222 25677777877643 4445 57789
Q ss_pred EEcCCCCCCCCCcceEEEEECCEEEEEcccccc
Q 016877 320 KVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEK 352 (381)
Q Consensus 320 ~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~ 352 (381)
+.+..|.-........-...++..++.++++..
T Consensus 421 ~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 421 SPLKSLAGHEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred ccchhhcCCccceEEEEeccCCceEEEeccCce
Confidence 888776432333223334556777777776643
No 190
>PRK09891 cold shock gene; Provisional
Probab=21.39 E-value=1.2e+02 Score=19.78 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=30.6
Q ss_pred cccccCCCCCCCCceehhHHHHHHhhheeEcCEEEEecC
Q 016877 3 RSFVGKNSTTPSPARVVLSIFVMILGFALVADFFWASSS 41 (381)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~GG 41 (381)
|..+.||--..+-+...|+++.-|.++++|.|.+.++-.
T Consensus 2 rrwisqnnirlprgaffisalfffnavcivsdnlliies 40 (76)
T PRK09891 2 RRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIES 40 (76)
T ss_pred ccccccCcccccchhHHHHHHHHhceeeEeeCCEEeehh
Confidence 445566666667788889999999999999888887754
No 191
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=20.07 E-value=3.5e+02 Score=26.74 Aligned_cols=91 Identities=13% Similarity=0.169 Sum_probs=48.9
Q ss_pred eeeeeCCCce--eeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEe
Q 016877 51 ASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFA 128 (381)
Q Consensus 51 ~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~G 128 (381)
++.++....+ ++++...|-+...-...+.....+..+++..+..||..-+-- -++|+.-+.-....-.++|.++.
T Consensus 253 Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v---~df~egpRN~~~fnp~g~ii~lA 329 (566)
T KOG2315|consen 253 LYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV---FDFPEGPRNTAFFNPHGNIILLA 329 (566)
T ss_pred EEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe---EeCCCCCccceEECCCCCEEEEe
Confidence 4445555334 555543333333222333344555566777888888866543 33443322222233355677777
Q ss_pred cCCCCCCcccceEEEeCCC
Q 016877 129 GYGSIDYVHSHVDIYNFTD 147 (381)
Q Consensus 129 G~~~~~~~~~~~~~yd~~~ 147 (381)
|.++ +..+++++|..+
T Consensus 330 GFGN---L~G~mEvwDv~n 345 (566)
T KOG2315|consen 330 GFGN---LPGDMEVWDVPN 345 (566)
T ss_pred ecCC---CCCceEEEeccc
Confidence 7754 335799999876
Done!