BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016879
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mn-Amppnp And N-Acetyl Glactosamine
pdb|2A2C|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase
Complexed With Mg-Adp And N-Acetyl Galactosamine 1-
Phosphate
Length = 478
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 147/349 (42%), Positives = 211/349 (60%), Gaps = 31/349 (8%)
Query: 34 GLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGG 93
G++ LVDG +P SGLSSS+A VC + + + G + K E+A++ + E++IGT+ GG
Sbjct: 149 GMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGG 208
Query: 94 MDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVE 153
MDQ+IS +A+ G A+LI+F+P+R TDV+LP+G FV+A+S E KA A S++N RV+E
Sbjct: 209 MDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVME 266
Query: 154 CRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSS--DPVFAVKEFLRKEPY 211
CRL A +LA ++ KV L +V+ K G S + + ++ L EPY
Sbjct: 267 CRLAAKLLAKYKSLQ----WDKVLRLEEVQA-------KLGISLEEMLLVTEDALHPEPY 315
Query: 212 TALDIEKI----TEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 267
+I + EE T I S ++ DVL +KL+QRA HVYSEA RV FK
Sbjct: 316 NPEEICRCLGISLEELRTQIL--SPNTQDVL----IFKLYQRAKHVYSEAARVLQFKKIC 369
Query: 268 SSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGC 327
+ E+ ++ LG+LMN SH SC +YECSCPEL++LV++CR GA G+RLTGAGWGGC
Sbjct: 370 EE--APENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTGAGWGGC 427
Query: 328 VVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGA 376
V++V F+ N+ + +YQ R D + +FA+KP GA
Sbjct: 428 TVSMVPADKLPSFLANVHKAYYQ-RSDGSLAPEKQ---SLFATKPGGGA 472
>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
pdb|2AJ4|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Galactokinase In Complex With Galactose And Mg:amppnp
Length = 548
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 138/395 (34%), Positives = 209/395 (52%), Gaps = 58/395 (14%)
Query: 30 GPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQF 86
P GL + +G VPTGSGLSSS AF+C+ +A++ A G + K+ + ++T E +
Sbjct: 169 APLAGLQVFCEGDVPTGSGLSSSAAFICAVALAVVKANMGPGYHMSKQNLMRITVVAEHY 228
Query: 87 IGTQSGGMDQAISIMAKSGFAELIDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAI 141
+G +GGMDQA S+ + A ++F P ++ T + P +FV+A++L S K
Sbjct: 229 VGVNNGGMDQAASVCGEEDHALYVEFKPQLKATPFKFPQLKNHEISFVIANTLVVSNKFE 288
Query: 142 TAASNYNNRVVECRLTAIVLAIKLG---MKPQEAISKVK-TLSDVEGLCVAFACKNGSSD 197
TA +NYN RVVE A VLA G + +E S K L D + V +A + S
Sbjct: 289 TAPTNYNLRVVEVTTAANVLAATYGVVLLSGKEGSSTNKGNLRDF--MNVYYARYHNIST 346
Query: 198 P---------------VFAVKEFL--RKEPYTALDI--------EKITEEKLTSIFANSS 232
P + V+E L +K+ ++ D+ E+ T + LT+ S
Sbjct: 347 PWNGDIESGIERLTKMLVLVEESLANKKQGFSVDDVAQSLNCSREEFTRDYLTT----SP 402
Query: 233 SSLDVLNAAKQYKLHQRAAHVYSEAKRV-HAFK-DTVSSNLSEEDKLKKLGDLMNDSHHS 290
VL KL+QRA HVYSE+ RV A K T +S ++ED K+ G LMN+S S
Sbjct: 403 VRFQVL------KLYQRAKHVYSESLRVLKAVKLMTTASFTADEDFFKQFGALMNESQAS 456
Query: 291 CSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE---- 346
C LYECSCPE++++ ++ +NG+ G+RLTGAGWGGC V LV + I +KE
Sbjct: 457 CDKLYECSCPEIDKICSIALSNGSYGSRLTGAGWGGCTVHLVPGGPNGN-IEKVKEALAN 515
Query: 347 QFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 381
+FY+ + + I + +L + SKP+ G+ ++
Sbjct: 516 EFYKVKYPK--ITDAELENAIIVSKPALGSCLYEL 548
>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p
pdb|3V5R|B Chain B, Crystal Structure Of The Unliganded Form Of Gal3p
Length = 505
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 189/390 (48%), Gaps = 54/390 (13%)
Query: 31 PPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFI 87
P VG I +PTG GLSS AF C++ +A + A ++ KK++ ++T E ++
Sbjct: 129 PLVGAQIFCQSDIPTGGGLSS--AFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYV 186
Query: 88 GTQSGGMDQAISIMAKSGFAELIDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAIT 142
G +GGMDQA S+ + A ++F P ++ T + P +FV+A++L +S K T
Sbjct: 187 GVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFET 246
Query: 143 AASNYNNRVVECRLTAIVLAIKLGMK-PQEAISKVKTLSDVEGLCVAFACK--------N 193
A +NYN RV+E + A LA + + P + ++ A+ + N
Sbjct: 247 APTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWN 306
Query: 194 GS--------------SDPVFAVKE--FLRKEPYTALDI--EKITEEKLTSIFANSSSSL 235
G + F+ K+ F E TAL+ E+ T + LT+
Sbjct: 307 GDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRF 362
Query: 236 DVLNAAKQYKLHQRAAHVYSEAKRV-HAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSV 293
VL KL+QRA HVYSE+ RV A K S+ ++ED G LMN+S SC
Sbjct: 363 QVL------KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDK 416
Query: 294 LYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESID---SQFILNLKEQFYQ 350
LYECSC E ++ ++ NG+ G+RLTGAGWGGC + LV + Q L E+FY
Sbjct: 417 LYECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYN 476
Query: 351 SRIDRGVINNNDLGLYVFASKPSSGAAKFK 380
R + + +L + SKP+ G ++
Sbjct: 477 VRYPD--LTDEELKDAIIVSKPALGTCLYE 504
>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|D Chain D, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 520
Score = 159 bits (402), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 189/390 (48%), Gaps = 54/390 (13%)
Query: 31 PPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFI 87
P VG I +PTG GLSS AF C++ +A + A ++ KK++ ++T E ++
Sbjct: 144 PLVGAQIFCQSDIPTGGGLSS--AFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYV 201
Query: 88 GTQSGGMDQAISIMAKSGFAELIDFNP-IRTTDVQLPAGG----TFVVAHSLAESLKAIT 142
G +GGMDQA S+ + A ++F P ++ T + P +FV+A++L +S K T
Sbjct: 202 GVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFET 261
Query: 143 AASNYNNRVVECRLTAIVLAIKLGMK-PQEAISKVKTLSDVEGLCVAFACK--------N 193
A +NYN RV+E + A LA + + P + ++ A+ + N
Sbjct: 262 APTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWN 321
Query: 194 GS--------------SDPVFAVKE--FLRKEPYTALDI--EKITEEKLTSIFANSSSSL 235
G + F+ K+ F E TAL+ E+ T + LT+
Sbjct: 322 GDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTF----PVRF 377
Query: 236 DVLNAAKQYKLHQRAAHVYSEAKRV-HAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSV 293
VL KL+QRA HVYSE+ RV A K S+ ++ED G LMN+S SC
Sbjct: 378 QVL------KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDK 431
Query: 294 LYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESID---SQFILNLKEQFYQ 350
LYECSC E ++ ++ NG+ G+RLTGAGWGGC + LV + Q L E+FY
Sbjct: 432 LYECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYN 491
Query: 351 SRIDRGVINNNDLGLYVFASKPSSGAAKFK 380
R + + +L + SKP+ G ++
Sbjct: 492 VRYPD--LTDEELKDAIIVSKPALGTCLYE 519
>pdb|1PIE|A Chain A, Crystal Structure Of Lactococcus Lactis Galactokinase
Complexed With Galactose
Length = 419
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 135/316 (42%), Gaps = 79/316 (25%)
Query: 34 GLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSG 92
G ++L+ G +PT SGLSSS + V L F + VP+ E+ QL + E +IG SG
Sbjct: 141 GFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSG 200
Query: 93 GMDQ-AISIMAKSGFAEL-----IDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASN 146
+DQ AI GF E+ +D N ++ V + +V + + +A+T S
Sbjct: 201 ILDQFAI------GFGEVKKAIELDCNTLKYEMVPVELRDYDIVIMNTNKP-RALTE-SK 252
Query: 147 YNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFL 206
YN R E R EA+ +++T D++ L L
Sbjct: 253 YNERFAETR---------------EALKRMQTRLDIQSLGE------------------L 279
Query: 207 RKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH-AFKD 265
E + A + + I +E L +RA H E R A K
Sbjct: 280 SNEEFDA-NTDLIGDETLI----------------------KRARHAVYENNRTKIAQKA 316
Query: 266 TVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GALGARLTGAGW 324
V+ NL+ K G+L+N SH S YE + EL+ L + G LGAR+TGAG+
Sbjct: 317 FVAGNLT------KFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGF 370
Query: 325 GGCVVALVKESIDSQF 340
GGC +ALV S F
Sbjct: 371 GGCAIALVAHDNVSAF 386
>pdb|2HFU|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
pdb|2HFU|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase In Complex
With R-Mevalonate
Length = 332
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 62/117 (52%), Gaps = 18/117 (15%)
Query: 225 TSIFANSSSSLDVLNAAKQY------KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLK 278
T I A+++ ++ ++ KQ +L+ H+ S+A+ L + D L+
Sbjct: 195 TGINASTAKVVNDVHKMKQQQPVQFKRLYDNYTHIVSQAREA----------LQKGD-LQ 243
Query: 279 KLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 335
+LG LMN +H C + + SC ELE +V CR GALGA+L+G G GG VAL S
Sbjct: 244 RLGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|1S4E|A Chain A, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|B Chain B, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|C Chain C, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|D Chain D, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|E Chain E, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|F Chain F, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|G Chain G, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|H Chain H, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
pdb|1S4E|I Chain I, Pyrococcus Furiosus Galactokinase In Complex With
Galactose, Adp And Magnesium
Length = 352
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 6/117 (5%)
Query: 217 EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA-AHVYSEAKRVHAFKDTVSSNLSEED 275
++I EE L + SS + + K LH++ +++ E RV +D + +E
Sbjct: 204 KRIAEESLRILGKESSKEVTEKDLGKLPPLHRKFFSYIVRENARVLEVRDAL-----KEG 258
Query: 276 KLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 332
++K+G ++ +H + Y SC EL+ V GA GARLTGAG+GG +ALV
Sbjct: 259 DIEKVGKILTTAHWDLAENYRVSCEELDFFVKKAXELGAYGARLTGAGFGGSAIALV 315
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 34 GLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEV-PKKEIAQLTCECEQFIGTQSG 92
GL + G +P G+GLSSS +F L + + + P K+ +F+G G
Sbjct: 89 GLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGVPCG 148
Query: 93 GMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNR 150
+DQ + K +D ++ + P + +V ++ +K A+S Y R
Sbjct: 149 ILDQFAVVFGKKDNVIFLDTQTLQYEYIPFPKDVSVLVFYT---GVKRELASSEYAER 203
>pdb|2HFS|A Chain A, Crystal Structure Of L. Major Mevalonate Kinase
pdb|2HFS|B Chain B, Crystal Structure Of L. Major Mevalonate Kinase
Length = 332
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 225 TSIFANSSSSLDVLNAAKQY------KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLK 278
T I A+++ ++ ++ KQ +L+ H+ S+A+ L + D L+
Sbjct: 195 TGINASTAKVVNDVHKXKQQQPVQFKRLYDNYTHIVSQAREA----------LQKGD-LQ 243
Query: 279 KLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 335
+LG L N +H C + + SC ELE +V CR GALGA+L+G G GG VAL S
Sbjct: 244 RLGQLXNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASS 299
>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus
Horikoshi
pdb|2DEI|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pnp And Galactose
pdb|2DEJ|A Chain A, Crystal Structure Of Galaktokinase From Pyrococcus
Horikoshii With Amp-Pn And Galactose
Length = 350
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 219 ITEEKLTSIFANSSSSLDVLNAAKQYKLHQRA-AHVYSEAKRVHAFKDTVSSNLSEEDKL 277
I EE L + SS + +K LH++ ++ E RV +D + +E +
Sbjct: 204 IAEESLKILGKGSSKEVREGELSKLPPLHRKFFGYIVRENARVLEVRDAL-----KEGNV 258
Query: 278 KKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 332
+++G ++ +H + YE SC EL+ V GA GARLTGAG+GG +ALV
Sbjct: 259 EEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAGFGGSAIALV 313
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 16 KAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKE 75
K + +K +VG G+ V G +P G+GLSSS +F L + +++
Sbjct: 72 KGIFWVLKESDYEVG---GIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLS 128
Query: 76 IAQLTCECE-QFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSL 134
L + E +F+G G +DQ + + G +D + + + P + +V ++
Sbjct: 129 KVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFPKDVSILVFYT- 187
Query: 135 AESLKAITAASNYNNR 150
++ A+S Y R
Sbjct: 188 --GVRRELASSEYAER 201
>pdb|2X7I|A Chain A, Crystal Structure Of Mevalonate Kinase From Methicillin-
Resistant Staphylococcus Aureus Mrsa252
Length = 308
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 268 SSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGC 327
+S++ E K + L D+ N+ H L S ++E+L+ + + NGA+ +LTGAG GG
Sbjct: 217 ASDVIEHHKFEALADIFNECHADLKAL-TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGS 275
Query: 328 VVALVKE 334
++ L K+
Sbjct: 276 MLLLAKD 282
>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|B Chain B, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|C Chain C, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
pdb|1WUU|D Chain D, Crystal Structure Of Human Galactokinase Complexed With
Mgamppnp And Galactose
Length = 399
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 104/280 (37%), Gaps = 73/280 (26%)
Query: 31 PPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGT 89
P G +V +VP G GLSSS + ++ L AQ+ + E F G
Sbjct: 128 PLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGX 187
Query: 90 QSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL--PAGGTFVVAHSLAESLKAITAASNY 147
G DQ IS+ + G A LID + T+ V L P + ++ SL A+S Y
Sbjct: 188 PCGIXDQFISLXGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVRHSL----ASSEY 243
Query: 148 NNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLR 207
R +C A L +E++ +V+ L ++E A ++ +
Sbjct: 244 PVRRRQCEEVARALG-------KESLREVQ-LEELE-----------------AARDLVS 278
Query: 208 KEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 267
KE + +RA HV E +R
Sbjct: 279 KEGF------------------------------------RRARHVVGEIRRT----AQA 298
Query: 268 SSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVN 307
++ L D + G L +SH S YE SCPEL++LV
Sbjct: 299 AAALRRGD-YRAFGRLXVESHRSLRDDYEVSCPELDQLVE 337
>pdb|1VIS|A Chain A, Crystal Structure Of Mevalonate Kinase
Length = 324
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 245 KLHQRAAHVYSEAKRVH----AFKDTVSSNLSEEDKLKK---LGDLMNDSHHSCSVLYEC 297
K ++ A + +E ++ FK+ + + E K+K G LM +H L
Sbjct: 197 KRKKKTAELVNEVAKIENKDEIFKE-IDKVIDEALKIKNKEDFGKLMTKNHELLKKL-NI 254
Query: 298 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 332
S P+L+ +V++ N GA+LTGAG GGCV+ LV
Sbjct: 255 STPKLDRIVDIG-NRFGFGAKLTGAGGGGCVIILV 288
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 245 KLHQRAAHVYSEAKRVH----AFKDTVSSNLSEEDKLKK---LGDLMNDSHHSCSVLYEC 297
K ++ A + +E ++ FK+ + + E K+K G LM +H L
Sbjct: 200 KRKKKTAELVNEVAKIENKDEIFKE-IDKVIDEALKIKNKEDFGKLMTKNHELLKKL-NI 257
Query: 298 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 332
S P+L+ +V++ N GA+LTGAG GGCV+ LV
Sbjct: 258 STPKLDRIVDIG-NRFGFGAKLTGAGGGGCVIILV 291
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With
Diphosphomevalonate
Length = 292
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 271 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVA 330
+S++D + LG +++ +H + S E + LV ++GALGA+++G G GGC++A
Sbjct: 207 ISQKDA-EGLGQILSQAHLHLKEI-GVSSLEADSLVETALSHGALGAKMSGGGLGGCIIA 264
Query: 331 LVKESIDSQ 339
LV +Q
Sbjct: 265 LVTNLTHAQ 273
>pdb|4HAC|A Chain A, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 31 PPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQ 90
P G+ + VD +P GSGL SS A +S AL FG + +EIA+L E E +
Sbjct: 94 PINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGA 153
Query: 91 SGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFV 129
+ D +S G + + ++T D + G T V
Sbjct: 154 ASPTDTYVSTFG--GVVTIPERRKLKTPDCGIVIGDTGV 190
>pdb|4HAC|B Chain B, Crystal Structure Of The Mevalonate Kinase From An
Archaeon Methanosarcina Mazei
Length = 321
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 31 PPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQ 90
P G+ + VD +P GSGL SS A +S AL FG + +EIA+L E E +
Sbjct: 94 PINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGA 153
Query: 91 SGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFV 129
+ D +S G + + ++T D + G T V
Sbjct: 154 ASPTDTYVSTFG--GVVTIPERRKLKTPDCGIVIGDTGV 190
>pdb|4F99|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9A|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Nucleotide
pdb|4F9B|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9B|C Chain C, Human Cdc7 Kinase In Complex With Dbf4 And Pha767491
pdb|4F9C|A Chain A, Human Cdc7 Kinase In Complex With Dbf4 And Xl413
Length = 361
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 29/160 (18%)
Query: 134 LAESLKAITAASNYNNRVVECRLTAIVLAI-KLGMKPQEAIS---------KVKTLSDVE 183
L E++ ++ +++ E +++ LA +L + P+E I+ ++ ++++
Sbjct: 12 LYEAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQ 71
Query: 184 GLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 243
L VA G D V VK RK + + + + E S LD+LN+
Sbjct: 72 CLTVA-----GGQDNVMGVKYCFRKNDHVVIAMPYLEHE----------SFLDILNSLSF 116
Query: 244 YKLHQRAAHVYSEAKRVHAF----KDTVSSNLSEEDKLKK 279
++ + +++ KR+H F +D SN +LKK
Sbjct: 117 QEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKK 156
>pdb|3BBO|V Chain V, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 198
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 42 TVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQ-SGGMDQAISI 100
T P LSSS AF S+ +F ++P K+ AQ++C + + TQ S A++
Sbjct: 4 TAPNLHSLSSSFAFSNPSSNVSATSFTFQIPNKK-AQISCISSKKLHTQKSFNFHDAVTP 62
Query: 101 MAKSGF 106
M K F
Sbjct: 63 MNKPSF 68
>pdb|4HTE|A Chain A, Crystal Structure Of The C-terminal Domain Of Nicking
Enzyme From Staphylococcus Aureus
Length = 353
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 228 FANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL 283
+ N S S + N AK K++ + Y E +R++ K S +ED+L K+ D+
Sbjct: 19 YXNKSDSTTLKNXAKDLKIYVTPINXYKENERLYDLKQKTSLITDDEDRLNKIEDI 74
>pdb|1KVK|A Chain A, The Structure Of Binary Complex Between A Mammalian
Mevalonate Kinase And Atp: Insights Into The Reaction
Mechanism And Human Inherited Disease
pdb|2R42|A Chain A, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
Length = 395
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 35 LDILVDGTVPTGSGLSSSTAF-VCSSTVALMAAFGVEVPKKE--------------IAQL 79
LDI+V +P G+GL SS A+ VC + L A V P K+ I +
Sbjct: 129 LDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKW 188
Query: 80 TCECEQFIGTQSGGMDQAIS 99
E E+ I G+D ++S
Sbjct: 189 AYEGERVIHGNPSGVDNSVS 208
>pdb|1UEK|A Chain A, Crystal Structure Of 4-(Cytidine
5'-Diphospho)-2c-Methyl-D- Erythritol Kinase
Length = 275
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 15 YKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKK 74
Y+A Y++A G P G+ IL++ +P G+GL ++ +AL A + EV
Sbjct: 61 YRAASLYLEAAGQ----PGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEVDLF 116
Query: 75 EIAQ-LTCECEQFI---GTQSGGMDQAISIMAKSGFAELIDFNPIRTT 118
+A+ L + F+ G ++ G+ + + +A ++ F +R
Sbjct: 117 ALARTLGADVPFFLLGRGAEARGVGERLKPLALPPVPAVVFFPGLRVP 164
>pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
pdb|3F9I|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
Reductase Rickettsia Prowazekii
Length = 249
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 257 AKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALG 316
A+ +H V + S E+KLK LG+ + D++ + C+ EE N+ L
Sbjct: 31 ARLLHKLGSKVIISGSNEEKLKSLGNALKDNY----TIEVCNLANKEECSNLISKTSNLD 86
Query: 317 ARLTGAGWGGCVVA--LVKESIDSQFILNLKEQFYQSR 352
+ AG +A + + D +NLK F +R
Sbjct: 87 ILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNR 124
>pdb|2R3V|A Chain A, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|B Chain B, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|C Chain C, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
pdb|2R3V|D Chain D, The Biochemical And Structural Basis For Feedback
Inhibition Of Mevalonate Kinase And Isoprenoid
Metabolism
Length = 396
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 15/80 (18%)
Query: 35 LDILVDGTVPTGSGLSSSTAF-VCSSTVALMAAFGVEVPKKE--------------IAQL 79
LDI+V +P G+GL SS A+ VC + L + P K+ I +
Sbjct: 129 LDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKEDLELINKW 188
Query: 80 TCECEQFIGTQSGGMDQAIS 99
+ E+ I G+D A+S
Sbjct: 189 AFQGERMIHGNPSGVDNAVS 208
>pdb|3TCM|A Chain A, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
pdb|3TCM|B Chain B, Crystal Structure Of Alanine Aminotransferase From Hordeum
Vulgare
Length = 500
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 19/147 (12%)
Query: 136 ESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGS 195
+ + A A N N +V++C + + QE ++KT C G+
Sbjct: 17 DKMAATVAVDNLNPKVLKCEYAVRGEIVIHAQRLQE---QLKTQPGSLPFDEILYCNIGN 73
Query: 196 -----SDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY--KLHQ 248
PV +E L + L + E++ ++F S D ++ AKQ +
Sbjct: 74 PQSLGQQPVTFFREVLALCDHPDL----LQREEIKTLF-----SADSISRAKQILAMIPG 124
Query: 249 RAAHVYSEAKRVHAFKDTVSSNLSEED 275
RA YS ++ +H +D ++S ++ D
Sbjct: 125 RATGAYSHSQGIHGLRDAIASGIASRD 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,615,707
Number of Sequences: 62578
Number of extensions: 415153
Number of successful extensions: 1184
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 40
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)