Query 016879
Match_columns 381
No_of_seqs 147 out of 1449
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016879.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016879hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02521 galactokinase 100.0 7.2E-65 1.6E-69 515.7 37.4 378 4-381 118-496 (497)
2 COG0153 GalK Galactokinase [Ca 100.0 4.8E-62 1E-66 468.4 31.6 295 5-379 92-389 (390)
3 PLN02865 galactokinase 100.0 1.7E-56 3.7E-61 445.4 35.2 308 4-379 105-423 (423)
4 PTZ00290 galactokinase; Provis 100.0 1.1E-55 2.3E-60 443.7 34.4 322 4-380 104-457 (468)
5 PRK05322 galactokinase; Provis 100.0 5.6E-52 1.2E-56 412.7 33.4 298 4-379 87-387 (387)
6 PRK05101 galactokinase; Provis 100.0 8E-52 1.7E-56 411.1 33.7 291 4-378 88-381 (382)
7 PRK00555 galactokinase; Provis 100.0 1.6E-50 3.4E-55 399.1 33.1 291 5-379 68-362 (363)
8 TIGR00131 gal_kin galactokinas 100.0 3.5E-50 7.7E-55 400.5 31.4 297 5-378 86-385 (386)
9 KOG0631 Galactokinase [Carbohy 100.0 1.7E-49 3.7E-54 387.5 22.5 374 2-381 109-489 (489)
10 PRK03817 galactokinase; Provis 100.0 2E-44 4.3E-49 355.1 32.9 290 3-380 61-351 (351)
11 COG1577 ERG12 Mevalonate kinas 100.0 3.4E-33 7.4E-38 266.6 23.8 233 10-352 63-296 (307)
12 PLN02677 mevalonate kinase 100.0 9.9E-33 2.2E-37 272.8 25.2 236 33-379 128-382 (387)
13 TIGR00549 mevalon_kin mevalona 100.0 2.9E-32 6.4E-37 259.5 23.2 217 5-331 57-273 (273)
14 TIGR01220 Pmev_kin_Gr_pos phos 100.0 1.4E-31 3E-36 264.0 27.2 238 6-346 74-344 (358)
15 PTZ00298 mevalonate kinase; Pr 100.0 1.1E-30 2.3E-35 255.2 28.4 219 33-352 93-314 (328)
16 PRK13412 fkp bifunctional fuco 100.0 8.5E-30 1.8E-34 272.2 27.0 213 33-347 725-951 (974)
17 PRK03926 mevalonate kinase; Pr 100.0 2.8E-29 6.1E-34 242.5 27.5 245 7-380 55-300 (302)
18 COG2605 Predicted kinase relat 100.0 2E-29 4.3E-34 232.6 22.6 213 35-347 90-313 (333)
19 KOG1511 Mevalonate kinase MVK/ 100.0 4.2E-28 9E-33 228.5 23.6 237 33-380 130-381 (397)
20 PLN02451 homoserine kinase 99.9 2.7E-24 5.9E-29 212.4 28.4 228 32-380 132-366 (370)
21 COG0083 ThrB Homoserine kinase 99.9 3.9E-23 8.4E-28 195.8 25.7 233 16-380 63-298 (299)
22 PRK01212 homoserine kinase; Pr 99.9 1.7E-22 3.7E-27 195.2 26.4 219 33-379 80-301 (301)
23 TIGR00191 thrB homoserine kina 99.9 1.4E-21 3E-26 189.0 25.8 217 33-378 79-301 (302)
24 TIGR01219 Pmev_kin_ERG8 phosph 99.9 4.6E-21 1E-25 192.3 27.6 263 11-351 89-432 (454)
25 TIGR01920 Shik_kin_archae shik 99.9 3.8E-21 8.3E-26 182.0 24.3 113 16-135 49-164 (261)
26 PTZ00299 homoserine kinase; Pr 99.9 9.6E-21 2.1E-25 184.5 23.6 224 33-380 81-323 (336)
27 PRK02534 4-diphosphocytidyl-2- 99.9 7E-21 1.5E-25 184.9 20.9 242 8-378 65-310 (312)
28 PRK01123 shikimate kinase; Pro 99.9 3.3E-20 7.1E-25 177.6 24.8 99 33-136 74-175 (282)
29 PRK03188 4-diphosphocytidyl-2- 99.9 4.2E-20 9.1E-25 178.5 24.6 214 32-380 81-296 (300)
30 PRK00128 ipk 4-diphosphocytidy 99.9 8.3E-21 1.8E-25 182.1 18.6 208 7-347 63-272 (286)
31 TIGR00144 beta_RFAP_syn beta-R 99.8 8.8E-19 1.9E-23 170.6 24.6 221 33-379 81-324 (324)
32 TIGR00154 ispE 4-diphosphocyti 99.8 1.4E-18 3E-23 167.2 19.7 113 10-137 64-177 (293)
33 PRK14608 4-diphosphocytidyl-2- 99.8 6.1E-18 1.3E-22 162.5 19.2 114 7-137 68-181 (290)
34 PRK14616 4-diphosphocytidyl-2- 99.8 8.5E-18 1.9E-22 161.4 19.5 194 32-350 81-276 (287)
35 PRK14614 4-diphosphocytidyl-2- 99.8 1.1E-17 2.4E-22 160.0 19.6 93 33-137 84-176 (280)
36 PRK14609 4-diphosphocytidyl-2- 99.8 8.2E-18 1.8E-22 159.9 18.2 113 6-137 61-174 (269)
37 PRK14611 4-diphosphocytidyl-2- 99.8 5.6E-17 1.2E-21 154.8 21.5 112 8-137 60-171 (275)
38 PRK14613 4-diphosphocytidyl-2- 99.7 1.2E-16 2.5E-21 154.0 20.2 198 32-352 91-291 (297)
39 PRK14615 4-diphosphocytidyl-2- 99.7 1.5E-16 3.2E-21 153.4 19.4 94 33-138 87-181 (296)
40 PRK14612 4-diphosphocytidyl-2- 99.7 4.7E-17 1E-21 155.4 15.8 89 33-137 82-170 (276)
41 COG1907 Predicted archaeal sug 99.7 6.7E-16 1.5E-20 143.3 21.5 227 32-379 69-311 (312)
42 PRK00343 ipk 4-diphosphocytidy 99.7 1.6E-15 3.6E-20 144.3 17.1 113 6-137 65-177 (271)
43 PRK14610 4-diphosphocytidyl-2- 99.6 7.5E-14 1.6E-18 133.7 19.1 107 9-135 65-173 (283)
44 COG1685 Archaeal shikimate kin 99.6 7.1E-13 1.5E-17 122.2 22.5 113 16-135 55-170 (278)
45 PRK00650 4-diphosphocytidyl-2- 99.6 1.4E-13 2.9E-18 131.3 18.2 92 33-136 79-170 (288)
46 PF00288 GHMP_kinases_N: GHMP 99.5 2.1E-14 4.6E-19 107.6 7.9 67 36-103 1-67 (67)
47 COG1947 IspE 4-diphosphocytidy 99.5 3.2E-13 6.9E-18 127.7 15.7 105 17-136 71-175 (289)
48 TIGR01240 mevDPdecarb diphosph 99.5 8.1E-12 1.8E-16 120.6 24.9 218 16-348 70-304 (305)
49 PF08544 GHMP_kinases_C: GHMP 99.4 2.3E-13 4.9E-18 106.3 7.5 82 263-349 1-84 (85)
50 PRK05905 hypothetical protein; 99.4 1.2E-11 2.7E-16 116.3 15.1 103 17-136 72-175 (258)
51 KOG4644 L-fucose kinase [Carbo 99.2 1.4E-09 3E-14 107.8 20.2 216 33-346 690-920 (948)
52 KOG1537 Homoserine kinase [Ami 99.1 1.4E-09 3.1E-14 99.8 11.3 228 32-378 92-352 (355)
53 PRK04181 4-diphosphocytidyl-2- 99.1 9E-10 2E-14 104.0 10.3 92 33-137 85-177 (257)
54 PLN02407 diphosphomevalonate d 98.9 1.1E-07 2.5E-12 92.2 20.1 60 36-104 105-167 (343)
55 COG3407 MVD1 Mevalonate pyroph 98.9 9.8E-07 2.1E-11 85.1 24.3 77 16-104 75-151 (329)
56 COG4542 PduX Protein involved 98.8 9E-07 1.9E-11 81.4 19.7 53 32-84 81-133 (293)
57 COG3890 ERG8 Phosphomevalonate 98.8 4.9E-07 1.1E-11 83.9 16.8 86 46-135 107-202 (337)
58 KOG2833 Mevalonate pyrophospha 98.6 2E-05 4.4E-10 74.6 22.3 62 34-104 105-166 (395)
59 KOG4519 Phosphomevalonate kina 98.5 1.2E-06 2.6E-11 83.2 12.8 69 46-117 152-234 (459)
60 COG1829 Predicted archaeal kin 98.5 1.9E-05 4E-10 73.9 18.8 95 33-134 73-170 (283)
61 PF03460 NIR_SIR_ferr: Nitrite 74.2 7.2 0.00016 28.5 4.7 49 296-346 20-68 (69)
62 COG2221 DsrA Dissimilatory sul 43.1 33 0.00071 33.4 4.1 47 297-345 42-88 (317)
63 COG0024 Map Methionine aminope 35.3 1E+02 0.0022 29.2 6.0 51 277-327 14-67 (255)
64 PF06153 DUF970: Protein of un 26.5 1.2E+02 0.0027 24.7 4.4 52 300-351 11-67 (109)
65 PRK04181 4-diphosphocytidyl-2- 26.2 57 0.0012 30.8 2.8 26 299-333 230-255 (257)
66 TIGR00162 conserved hypothetic 25.6 2.7E+02 0.0058 24.9 6.9 61 13-85 96-159 (188)
67 PF08060 NOSIC: NOSIC (NUC001) 24.8 1.3E+02 0.0029 20.9 3.8 32 277-308 9-40 (53)
No 1
>PLN02521 galactokinase
Probab=100.00 E-value=7.2e-65 Score=515.70 Aligned_cols=378 Identities=75% Similarity=1.165 Sum_probs=329.3
Q ss_pred CCCccchhh-hHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 016879 4 LFHLWCFVF-FRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCE 82 (381)
Q Consensus 4 ~~~~W~~yv-~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~ 82 (381)
+...|.+|+ ++++++++.+.+.+..++.+.||++.|.|+||+|+|||||||++||++.|++.+++.++++++++++|++
T Consensus 118 ~~~~W~nYv~~~~~gv~~~l~~~~~~~~~~~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~ 197 (497)
T PLN02521 118 ANHKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCK 197 (497)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhccccCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 446799999 9999999999987764323469999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHH
Q 016879 83 CEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA 162 (381)
Q Consensus 83 ~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~ 162 (381)
+|+++|.++|+|||+++++|+.|+++++||+++.++.+|+|.++.|+|++|+++++++.++++.||.|++||+.|+++|+
T Consensus 198 ~E~~~g~~~g~mDq~as~~g~~g~al~~d~~~l~~~~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~ 277 (497)
T PLN02521 198 CERHIGTQSGGMDQAISIMAQQGVAKLIDFNPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLA 277 (497)
T ss_pred HhCccCCCCChHHHHHHHhcCCCcEEEEecCCCceEEeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhh
Q 016879 163 IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAK 242 (381)
Q Consensus 163 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
++.++..++....+++|||+..++..+.+.....++.+.+++.+.+.+|+.+++...++..+.+++++.++...++...+
T Consensus 278 ~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (497)
T PLN02521 278 VKLGMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAK 357 (497)
T ss_pred hhcCCcchhcccccCCHHHHHHHHhhhcccccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccc
Confidence 98887654322246789998765444445455556777888888888899999988876555555555444444444456
Q ss_pred hHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCC
Q 016879 243 QYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGA 322 (381)
Q Consensus 243 ~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGa 322 (381)
++.+++|++|+++|+.||.+++++|+++++++.+++.||++|+++|.++|++|++|||++|.|+++|++.|++|+|||||
T Consensus 358 ~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~~vS~~elD~lv~~a~~~Ga~GaRltGa 437 (497)
T PLN02521 358 HFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEELVKVCRDNGALGARLTGA 437 (497)
T ss_pred hhHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHhcCCcEEEECCC
Confidence 67899999999999999999999999865445569999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeeccC
Q 016879 323 GWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 381 (381)
Q Consensus 323 G~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 381 (381)
|||||+++|++++.++++++.+.+.|+++.+.++.+.+.++.+.+|+++|++||++++|
T Consensus 438 G~GG~~i~lv~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~~~~~ 496 (497)
T PLN02521 438 GWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPSSGAAILKF 496 (497)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHHHHHhhccccccccccCCCCcEEEEecCCCceEeec
Confidence 99999999999999999999999999987643345556677899999999999999875
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.8e-62 Score=468.42 Aligned_cols=295 Identities=34% Similarity=0.543 Sum_probs=264.8
Q ss_pred CCccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 016879 5 FHLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 84 (381)
Q Consensus 5 ~~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E 84 (381)
.+.|+||+ +|++..++..|+++ .|+++.|.|+||.|+|||||||+.|+++.++.+++++++++.+++++|+++|
T Consensus 92 ~~~W~nYv---kgvi~~l~~~g~~~---~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AE 165 (390)
T COG0153 92 IDDWANYV---KGVIKALQKRGYAF---TGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAE 165 (390)
T ss_pred cchhhhhH---HHHHHHHHhcCCCc---CCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 47999999 88999999999875 6999999999999999999999999999999999999999999999999999
Q ss_pred -hhhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCC-cEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHH
Q 016879 85 -QFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAG-GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA 162 (381)
Q Consensus 85 -~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~-~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~ 162 (381)
+|+|.+||+|||+++.+|..++++++||++++++++|+|.+ +.++|+||++ ++.++.++||.|+.||+.|+++|+
T Consensus 166 n~fvGvn~G~mDQ~~s~~G~~~~al~ld~~~l~~~~~~~p~~~~~ivI~ns~v---kr~la~seYn~Rr~ece~A~~~l~ 242 (390)
T COG0153 166 NQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERRAECEEAAEFLG 242 (390)
T ss_pred hhccCCcCchHHHHHHHhCCCCcEEEEEcccCceEEeccCccceEEEEecCCC---ccccchhHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999985 9999999999 688999999999999999999998
Q ss_pred HHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhh
Q 016879 163 IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAK 242 (381)
Q Consensus 163 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+. +++|+++... ++.++.. .. +.
T Consensus 243 ~~-----------~~~L~d~~~~-----------------------------~~~~~~~-----~i-----------~~- 265 (390)
T COG0153 243 VS-----------IKSLRDVTDE-----------------------------EFAALQA-----EI-----------EV- 265 (390)
T ss_pred Hh-----------hhhhhhcCHH-----------------------------HHHhhhh-----hc-----------cc-
Confidence 82 1367765432 1222110 00 00
Q ss_pred hHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHh-CCCcEEEEcC
Q 016879 243 QYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTG 321 (381)
Q Consensus 243 ~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~-~Ga~Gak~sG 321 (381)
+..+++|++|+++|++|++++++||+++ |+.+||+||++||.+||++|++||||+|+|+++|.. .|++|+||||
T Consensus 266 ~~~~~rRa~hvv~En~Rvl~a~~Al~~~-----dl~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~~GaRmTG 340 (390)
T COG0153 266 DPKIARRARHVVTENQRVLEAAKALRSG-----DLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMTG 340 (390)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCcccceecC
Confidence 1247899999999999999999999886 599999999999999999999999999999999975 6789999999
Q ss_pred CCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 016879 322 AGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 379 (381)
Q Consensus 322 aG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 379 (381)
||||||+|+|++.+.++++++++.++|++..+ +.+.+|+++|+.|++++
T Consensus 341 aGfGGc~IaLv~~~~v~~~~e~v~~~y~~~~g---------~k~~~yv~~~~~G~~~~ 389 (390)
T COG0153 341 AGFGGCVIALVPNDDVEAVAEAVAEEYEKVTG---------LKAAFYVVEASQGAGVC 389 (390)
T ss_pred CCCCceEEEEechhhHHHHHHHHHHhHHhhcC---------ccccEEEEeccCCcccc
Confidence 99999999999999999999999999998875 57899999999999976
No 3
>PLN02865 galactokinase
Probab=100.00 E-value=1.7e-56 Score=445.43 Aligned_cols=308 Identities=24% Similarity=0.315 Sum_probs=261.3
Q ss_pred CCCccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCC-CCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 016879 4 LFHLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTV-PTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCE 82 (381)
Q Consensus 4 ~~~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~I-P~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~ 82 (381)
+.+.|++|+ +|++..+.+.|..+ ++||++.|.++| |.++|||||||++||++.+++.+++.++++++++++|++
T Consensus 105 ~~~~W~~Yv---~gv~~~l~~~g~~~--~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~ 179 (423)
T PLN02865 105 EESNWGDYA---RGAVYALQSRGHAL--SQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRL 179 (423)
T ss_pred CCCCHHHHH---HHHHHHHHHcCCCC--CCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 457899999 89999998877642 479999999999 579999999999999999999999999999999999999
Q ss_pred hhh-hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecC-------CCcEEEEEeCCcchhhhhhc-ccchhhHHHH
Q 016879 83 CEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP-------AGGTFVVAHSLAESLKAITA-ASNYNNRVVE 153 (381)
Q Consensus 83 ~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~-------~~~~~ll~~s~~~~~~~~~~-~~~y~~r~~e 153 (381)
+|+ ++|.+||+|||+++++|..|+++++||+++.++.+|+| .++.|++++|+++ |... ++.||.|++|
T Consensus 180 ~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l~~~~vpl~~~~~~~~~~~~ivv~~s~~~---h~l~~~~~Yn~Rr~E 256 (423)
T PLN02865 180 IENEYLGLRNGILDQSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGLR---HALTNKPGYNLRVSE 256 (423)
T ss_pred HHHHhcCCCCccccHHHHHhcccCceEEEEccCCCcceeecCcccccCCCCeEEEEEeCCCc---hhhcccchhhHHHHH
Confidence 996 88999999999999999999999999999887777776 3688999999984 5554 7899999999
Q ss_pred HHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCC
Q 016879 154 CRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSS 233 (381)
Q Consensus 154 ~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (381)
|+.|+++|++++|+... .++|+++.. +++.....
T Consensus 257 c~~aa~~l~~~~~~~~~-----~~~Lr~~~~-----------------------------~~~~~~~~------------ 290 (423)
T PLN02865 257 CQEAARFLLEASGNDEL-----EPLLCNVEP-----------------------------EVYEAHKC------------ 290 (423)
T ss_pred HHHHHHHHHHhcCCccc-----hhhhhcCCH-----------------------------HHHHHHHh------------
Confidence 99999999988764211 234555421 11211100
Q ss_pred chhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHh-C
Q 016879 234 SLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-N 312 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~-~ 312 (381)
.....+++|++|+++|+.||.+++++|+++ |++.||+||+++|.++|++|++||||+|.|++.+++ .
T Consensus 291 -------~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~-----d~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a~~~~ 358 (423)
T PLN02865 291 -------KLEAVLARRAEHYFSENMRVIKGVEAWASG-----NLEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAP 358 (423)
T ss_pred -------hcCHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHHHhcC
Confidence 001136899999999999999999999986 599999999999999999999999999999999998 6
Q ss_pred CCcEEEEcCCCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 016879 313 GALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 379 (381)
Q Consensus 313 Ga~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 379 (381)
|++|+||||||||||+++|++++.++++++++.+.|++..+ +..+.-+..+.+|+++|++|++++
T Consensus 359 Ga~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v~~~Y~~~~p--~~~~~~~~~~~~~~~~p~~Ga~~~ 423 (423)
T PLN02865 359 GVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQP--ELASNINGDKPVLICEAGDCARVL 423 (423)
T ss_pred CCeEEEEeccCCccEEEEEEchhHHHHHHHHHHHHHHhhcc--ccccccCCCCcEEEEecCCCcccC
Confidence 99999999999999999999999999999999999997642 122122357899999999999875
No 4
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=1.1e-55 Score=443.71 Aligned_cols=322 Identities=21% Similarity=0.305 Sum_probs=253.6
Q ss_pred CCCccchhhhHHHHHHHH-HHHcCCCCC--CCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCC-----C-----
Q 016879 4 LFHLWCFVFFRYKAFYEY-VKAKGLDVG--PPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGV-----E----- 70 (381)
Q Consensus 4 ~~~~W~~yv~~~~g~~~~-l~~~~~~~~--~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~-----~----- 70 (381)
+...|+||+ +|++.. +++.|..+. +++||++.|.++||.|+|||||||+.||++.|++.+++. .
T Consensus 104 ~~~~W~nYv---~gv~~~~l~~~g~~~~~~~~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~ 180 (468)
T PTZ00290 104 HNKAWTTFV---RGAATLRLNRLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGR 180 (468)
T ss_pred CcccHHHHH---HHHHHHHHHHhCCCcccCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 347799999 888765 555665320 236999999999999999999999999999999998632 1
Q ss_pred -------C---CHHHHHHHHHHhhh-hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecC----CCcEEEEEeCCc
Q 016879 71 -------V---PKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP----AGGTFVVAHSLA 135 (381)
Q Consensus 71 -------l---s~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~----~~~~~ll~~s~~ 135 (381)
+ +..+|+.+|+++|+ ++|.+||+|||+++++|+.|+++++||++++++++|++ .++.|+|+||++
T Consensus 181 ~~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiMDQ~asa~g~~~~al~iD~~~l~~~~v~l~~~~~~~~~~vV~nS~v 260 (468)
T PTZ00290 181 RYSILPPMSKEELIELAKQARRIETEFCGVNVGIMDQFISAFAEEDKFMFLDCKSLTFESHDMTPLLGDGACFLLIDSMI 260 (468)
T ss_pred ccccccccCcccHHHHHHHHHHHHHhhcCCCcchhhHHHHHhCCCCcEEEEecCCCeEEEeccCCCCCCCcEEEEEeCCC
Confidence 2 34889999999997 89999999999999999999999999999999999875 479999999999
Q ss_pred chhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcc-cchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHH
Q 016879 136 ESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVK-TLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTAL 214 (381)
Q Consensus 136 ~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~-~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 214 (381)
++++..+++..||.|++||+.|++.|+++. + +.++ +||++. ....+++.+
T Consensus 261 ~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~-l------~~~~~~Lrd~~----------------------~~~~~~~~~ 311 (468)
T PTZ00290 261 KHDLLGGTAGMYNTVRSDQEGAQKKIGKHR-Y------RGKPFTFSDLV----------------------RNPKKYTFD 311 (468)
T ss_pred cchhccccchhhHHHHHHHHHHHHHhcccc-c------cchhhhHHHhh----------------------hcccccccc
Confidence 766555555699999999999999996642 0 0011 333321 011223322
Q ss_pred HHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcCC--CchHHHHHHHHHHHHHhHHhh
Q 016879 215 DIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCS 292 (381)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~~--~~~~d~~~lg~lm~~sh~~lr 292 (381)
+.... +...+.+.+ ++.+++|++|+++|+.||.+++++|+... ..++|++.||+||+++|.+||
T Consensus 312 ~~~~~-------~~~~~~~~l-------~~~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~ 377 (468)
T PTZ00290 312 GDVVA-------FMESCKPLM-------TPGEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMR 377 (468)
T ss_pred ccHHH-------HHHHhhhcC-------CHHHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHH
Confidence 11000 000000000 13579999999999999999999996311 123469999999999999999
Q ss_pred hhccCCChHHHHHHHHH-HhCCCcEEEEcCCCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEee
Q 016879 293 VLYECSCPELEELVNVC-RNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASK 371 (381)
Q Consensus 293 ~~~~vs~peld~l~~~a-~~~Ga~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (381)
++|+||||++|.|++.+ ...|++|+||||||||||+++|++++..+++++++++.|.+.++ ..+.+|+++
T Consensus 378 ~~~~vS~~elD~lv~~~~~~~G~~GaRlTGaG~GGc~i~Lv~~~~~~~~~~~v~~~y~~~~g---------~~~~~~~~~ 448 (468)
T PTZ00290 378 DLMKITTPELDFIHELINEEKGVAGGRMMGGGFGGCIILLLKKNAVDRVVAHVREKFKARFG---------VENDVYPVV 448 (468)
T ss_pred HhcCCCcHHHHHHHHHHHHhCCCcEEEEecCCCceEEEEEechhhHHHHHHHHHHHHHHhhC---------CCCcEEEEe
Confidence 99999999999999976 45799999999999999999999999999999999999987753 367899999
Q ss_pred CCCceeecc
Q 016879 372 PSSGAAKFK 380 (381)
Q Consensus 372 p~~Ga~v~~ 380 (381)
|++|++++.
T Consensus 449 ~~~Ga~~~~ 457 (468)
T PTZ00290 449 AGDGAFVVS 457 (468)
T ss_pred cCCCcEEEe
Confidence 999999875
No 5
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=5.6e-52 Score=412.66 Aligned_cols=298 Identities=31% Similarity=0.457 Sum_probs=258.7
Q ss_pred CCCccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 016879 4 LFHLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 83 (381)
Q Consensus 4 ~~~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~ 83 (381)
....|.+|+ ++++..+...+... ..||++.|.|+||+|+|||||||++||++.|++++++.++++++++++|+.+
T Consensus 87 ~~~~w~~y~---~gvi~~l~~~~~~~--~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~ 161 (387)
T PRK05322 87 KEDDWANYP---KGVLKFLQEAGYKI--DHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKT 161 (387)
T ss_pred CccchHHHH---HHHHHHHHHcCCCC--CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 446799999 89999998876531 3799999999999999999999999999999999999999999999999999
Q ss_pred hh-hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCC-CcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHH
Q 016879 84 EQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVL 161 (381)
Q Consensus 84 E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~-~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l 161 (381)
|+ +.|.+||+|||+++++|+.++++++|++++..+.+|+|. ++.|+++||++ ++.+.++.||.|+.||+.+++.+
T Consensus 162 E~~~~G~~sG~mDq~as~~G~~~~~~~~d~~~~~~~~~~~~~~~~~lvv~dsg~---~~~~~~~~yn~r~~e~~~a~~~l 238 (387)
T PRK05322 162 ENEFIGVNSGIMDQFAIGMGKKDHAILLDCNTLEYEYVPLDLGDYVIVIMNTNK---RRELADSKYNERRAECEKALEEL 238 (387)
T ss_pred HhccCCCCcchHHHHHHHhccCCeEEEEecCCCceEEeccCCCCeEEEEEECCC---ccccCcchhhHHHHHHHHHHHHH
Confidence 97 789999999999999999999999999998888888864 67899999998 67788899999999999999999
Q ss_pred HHHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhh
Q 016879 162 AIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAA 241 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (381)
++++++ ++|+++.. +++..+. +. -
T Consensus 239 ~~~~~~---------~~l~~~~~-----------------------------~~~~~~~-----~~-------------~ 262 (387)
T PRK05322 239 QKKLDI---------KSLGELTE-----------------------------EEFDEYS-----YL-------------I 262 (387)
T ss_pred hhhcCc---------cchhcCCH-----------------------------HHHHHHH-----hh-------------c
Confidence 887543 24454321 1111110 00 0
Q ss_pred hhHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHH-hCCCcEEEEc
Q 016879 242 KQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLT 320 (381)
Q Consensus 242 ~~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~-~~Ga~Gak~s 320 (381)
.++.+++|+.|++.|+.|+..++.+|+++ |++.||++|+++|.+|++.|++|+|++|.|++.++ ..|++|+|||
T Consensus 263 ~~~~~~~r~~h~v~e~~r~~~~~~al~~~-----d~~~lg~lm~~sh~~L~~~y~~s~~eld~lv~~a~~~~Ga~garls 337 (387)
T PRK05322 263 KDETLLKRARHAVTENQRTLKAVKALKAG-----DLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAAWKQEGVLGARMT 337 (387)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHhhHHHHhhhcCCCHhHHHHHHHHHhcCCccEEEEe
Confidence 01246899999999999999999999986 59999999999999999999999999999999997 5899999999
Q ss_pred CCCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 016879 321 GAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 379 (381)
Q Consensus 321 GaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 379 (381)
|||+|||+++|++.+..+++++.+.+.|++.+. ..+.+|+++|++|++++
T Consensus 338 GaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~---------~~~~~~~~~~~~Ga~~~ 387 (387)
T PRK05322 338 GAGFGGCAIAIVKKDKVEAFKENVGKAYEEKIG---------YAASFYVAEIGDGAREL 387 (387)
T ss_pred cCCCceEEEEEEcHHHHHHHHHHHHHHHHHhcC---------CCCcEEEEecCCCcccC
Confidence 999999999999999999999999999988764 36789999999999974
No 6
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=8e-52 Score=411.10 Aligned_cols=291 Identities=30% Similarity=0.467 Sum_probs=252.5
Q ss_pred CCCccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Q 016879 4 LFHLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 83 (381)
Q Consensus 4 ~~~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~ 83 (381)
+...|.+|+ ++++..+...+.. ..|++++|.|+||+|+|||||||++||++.|++.+++.++++++|+++|+++
T Consensus 88 ~~~~w~~yv---~~~~~~l~~~~~~---~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~ 161 (382)
T PRK05101 88 PEQQWANYV---RGVVKHLQERNPD---FGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEA 161 (382)
T ss_pred CCCchHHHH---HHHHHHHHHhCCC---CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 456899999 8888888876643 4699999999999999999999999999999999999999999999999999
Q ss_pred hh-hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHH
Q 016879 84 EQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA 162 (381)
Q Consensus 84 E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~ 162 (381)
|+ +.|.+||.|||+++++|+.++++++++++..++++++|.++.|+|+||+++ +....+.||.|++||+.|++.++
T Consensus 162 E~~~~G~~~G~~Dq~~s~~G~~~~~~~~d~~~~~~~~~~~~~~~~~vv~~sg~~---~~l~~~~y~~r~~e~~~A~~~l~ 238 (382)
T PRK05101 162 ENQFVGCNCGIMDQLISALGKKDHALLIDCRSLETKAVPMPEGVAVVIINSNVK---RGLVDSEYNTRRQQCETAARFFG 238 (382)
T ss_pred HHHhcCCCCccHHHHHHHcCCCCeEEEEEcCCCceEEeeCCCCcEEEEEeCCCC---ccccccchhHHHHHHHHHHHHhC
Confidence 97 789999999999999999999999999998888999998999999999995 45666899999999999998875
Q ss_pred HHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhh
Q 016879 163 IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAK 242 (381)
Q Consensus 163 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.+ .|+++.. +++..... .-
T Consensus 239 ~~-------------~l~~~~~-----------------------------~~~~~~~~-------------------~l 257 (382)
T PRK05101 239 VK-------------ALRDVTL-----------------------------EQFNAVAA-------------------EL 257 (382)
T ss_pred hH-------------hhhcCCH-----------------------------HHHHHHHh-------------------hC
Confidence 43 3333210 11111100 00
Q ss_pred hHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhC-CCc-EEEEc
Q 016879 243 QYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GAL-GARLT 320 (381)
Q Consensus 243 ~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~-Ga~-Gak~s 320 (381)
...+++|+.|+++|+.||.+++++|+++ |++.||+||+++|.+||+.|++|||++|.|++.|++. |++ |||||
T Consensus 258 ~~~~~~r~~h~i~E~~rv~~a~~al~~~-----d~~~lG~Lm~~sh~~lr~~~~vS~~eld~lv~~a~~~~Ga~gGaklt 332 (382)
T PRK05101 258 DPVVAKRARHVITENARTLEAASALAAG-----DLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQGGVRMT 332 (382)
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHhHHHHhhcCCCCHhHHHHHHHHHhccCCcceEEec
Confidence 1146889999999999999999999986 5999999999999999988999999999999999996 984 88999
Q ss_pred CCCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 016879 321 GAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 378 (381)
Q Consensus 321 GaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 378 (381)
|||||||+++|++++.++++++++.+.|++++. ..+.+|+++|+.|+++
T Consensus 333 GaG~GG~~ial~~~~~~~~~~~~~~~~y~~~~~---------~~~~~~~~~~~~Ga~~ 381 (382)
T PRK05101 333 GGGFGGCIVALVPEELVEAVRQAVAEQYEAKTG---------LKETFYVCKASQGAGQ 381 (382)
T ss_pred cCCCccEEEEEEcHHHHHHHHHHHHHHHHHhhC---------CCCeEEEEecCCCccc
Confidence 999999999999999999999999999988764 3678999999999986
No 7
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=1.6e-50 Score=399.10 Aligned_cols=291 Identities=26% Similarity=0.382 Sum_probs=251.4
Q ss_pred CCccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 016879 5 FHLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 84 (381)
Q Consensus 5 ~~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E 84 (381)
...|.+|+ ++++..++..+.. ..|+++.|.|+||+++|||||||++||++.|++.+++.++++++++++|+++|
T Consensus 68 ~~~w~~y~---~gv~~~l~~~g~~---~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE 141 (363)
T PRK00555 68 VTGWAAYA---AGVIWALRGAGHP---VPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAE 141 (363)
T ss_pred CcchHHHH---HHHHHHHHHcCCC---CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 36799999 8888888887753 36999999999999999999999999999999999999999999999999999
Q ss_pred h-hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCC---CcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHH
Q 016879 85 Q-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPA---GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIV 160 (381)
Q Consensus 85 ~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~---~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~ 160 (381)
+ +.|.+||.|||+++++||.|+++++++++..++++|+|. ++.|+++||+++ +.+.+..||.|+.+|+.+++.
T Consensus 142 ~~~~G~~~G~~Dq~as~~G~~~~~~~~d~~~~~~~~v~~~~~~~~~~lvv~~s~~~---~~~~~~~y~~rr~~~~~~~~~ 218 (363)
T PRK00555 142 NEYVGAPTGLLDQLAALFGAPKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRAR---HRHAGGEYAARRASCERAAAD 218 (363)
T ss_pred HhhCCCCCChhHHHHHHhCCCCeEEEEEcCCCcEEEeccCCCcCceEEEEEcCCCc---ccccchhhHHHHHHHHHHHHH
Confidence 7 789999999999999999999999999988888888875 357999999984 566778999999999999877
Q ss_pred HHHHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhh
Q 016879 161 LAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNA 240 (381)
Q Consensus 161 l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (381)
++.+ +++++.. +.+..+ . .
T Consensus 219 ~~~~-------------~lr~~~~-----------------------------~~~~~~-~------------------~ 237 (363)
T PRK00555 219 LGVS-------------SLRAVQD-----------------------------RGLAAL-G------------------A 237 (363)
T ss_pred hCcc-------------chhcCCH-----------------------------HHHHHH-H------------------h
Confidence 6322 3443211 011110 0 0
Q ss_pred hhhHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEc
Q 016879 241 AKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLT 320 (381)
Q Consensus 241 ~~~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~s 320 (381)
..++..++|+.|+++|+.|+.+++.+|.++ |++.||++|+++|.++|+.+++|+|++|.|++.+++.|++|+|||
T Consensus 238 ~~~~~~~~r~~h~~~e~~~v~~~~~al~~g-----d~~~lg~lm~~~h~~lr~~~~vS~~~ld~l~~~a~~~Ga~Gakls 312 (363)
T PRK00555 238 IADPIDARRARHVLTENQRVLDFAAALADS-----DFTAAGQLLTASHASMRDDFEITTERIDLIADSAVRAGALGARMT 312 (363)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhHHHHhhcCCCChhHHHHHHHHHhcCCeEEEEC
Confidence 011245889999999999999999999986 599999999999999998899999999999999999999999999
Q ss_pred CCCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 016879 321 GAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 379 (381)
Q Consensus 321 GaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 379 (381)
|||||||+++|++.+.++++.+.+++.|++.++ ..+.+|+++|++|++++
T Consensus 313 GaG~Gg~vial~~~~~~~~~~~~l~~~y~~~~~---------~~~~~~~~~~~~g~~~~ 362 (363)
T PRK00555 313 GGGFGGCVIALVPADRAEDVADTVRRAAVTAGY---------PEPAVSRTYAAPGAGEC 362 (363)
T ss_pred CCCccCeEEEEEchhHHHHHHHHHHHHHHHccC---------CCCcEEEEecCCCcccC
Confidence 999999999999988899999999999998764 26789999999999986
No 8
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=3.5e-50 Score=400.55 Aligned_cols=297 Identities=34% Similarity=0.506 Sum_probs=250.4
Q ss_pred CCccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 016879 5 FHLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 84 (381)
Q Consensus 5 ~~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E 84 (381)
...|.+|+ ++++..+.+.+... +.||++.|.++||+++|||||||++||++.|++.+++.++++++++++++.+|
T Consensus 86 ~~~w~~y~---~~~~~~~~~~~~~~--~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E 160 (386)
T TIGR00131 86 VSDWANYF---KGVLHVAQERFNSF--PLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAE 160 (386)
T ss_pred CCCcHhHH---HHHHHHHHHhcCCC--CCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Confidence 37899999 77777787766532 46999999999999999999999999999999999999999999999999999
Q ss_pred h-hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCC-CcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHH
Q 016879 85 Q-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA 162 (381)
Q Consensus 85 ~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~-~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~ 162 (381)
+ +.|.++|+|||+++++||.+++++++++++.++++++|. ++.|+|++|+++ +.+.+..||.|++||+.|+++++
T Consensus 161 ~~~~G~~~g~~Dq~~s~~G~~~~~l~~~~~~~~~~~~~~~~~~~~lvv~~s~~~---~~t~~~~y~~r~~e~~~a~~~l~ 237 (386)
T TIGR00131 161 NHFVGVNCGIMDQAASVLGKEDHALLVECRSLKATPFKFPQLGIAFVIANTNVK---RTLAPSNYNTRRQECTTAANFLA 237 (386)
T ss_pred cCccCCCcchHHHHHHHhccCCcEEEEEcCCCceeeecCCCCCeEEEEEeCCCc---cccccchhHHHHHHHHHHHHHhc
Confidence 7 789999999999999999999999999998888999997 899999999994 55777899999999999999986
Q ss_pred HHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhh
Q 016879 163 IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAK 242 (381)
Q Consensus 163 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.+. ..+||++.+.. + ..+...++. +.
T Consensus 238 ~~~----------~~~lr~~~~~~---------------~-----------~~~~~~~~~-~~----------------- 263 (386)
T TIGR00131 238 ATD----------KGALRDFMNEY---------------F-----------ARYIARLTK-ML----------------- 263 (386)
T ss_pred ccc----------ccchhhCCHHH---------------H-----------hhhHhhHhh-cC-----------------
Confidence 541 01344332110 0 000000000 00
Q ss_pred hHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHH-HhCCCcEEEEcC
Q 016879 243 QYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTG 321 (381)
Q Consensus 243 ~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a-~~~Ga~Gak~sG 321 (381)
...++|+.|+++|+.||.+++++|+++ |++.||++|+++|.+++++|++|||++|.+++.+ +.+||+|+||||
T Consensus 264 -~~~~~r~~h~v~e~~rv~~~~~al~~~-----d~~~lG~lm~~sh~~l~~~~~vs~peld~lv~~a~~~~GAlGakltG 337 (386)
T TIGR00131 264 -PLVEERAKHVVSENLRVLKAVKAMKDN-----DFKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTG 337 (386)
T ss_pred -HHHHhhHheeehHHHHHHHHHHHHHhC-----cHHHHHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHhcCCCcEEEEec
Confidence 124679999999999999999999986 5999999999999999999999999999999876 668999999999
Q ss_pred CCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 016879 322 AGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 378 (381)
Q Consensus 322 aG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 378 (381)
||||||+++|++++.++++++++++.|++... ..+.+|++.++.|++.
T Consensus 338 aG~GG~vial~~~~~~~~v~~~~~~~y~~~~~---------~~~~~~~~~~~~Ga~~ 385 (386)
T TIGR00131 338 AGFGGCTVHLVPNENVDKVRQAVADKYPKKTG---------LELTFYVIVSKPGAGS 385 (386)
T ss_pred CCCceEEEEEEcHHHHHHHHHHHHHHHHHhhC---------CCCcEEEEEECCCcCC
Confidence 99999999999998999999999999976542 3778999999999875
No 9
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-49 Score=387.51 Aligned_cols=374 Identities=39% Similarity=0.594 Sum_probs=321.2
Q ss_pred CCCCCccchhh-hHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHh-CCC--CCHHHHH
Q 016879 2 GPLFHLWCFVF-FRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAF-GVE--VPKKEIA 77 (381)
Q Consensus 2 ~~~~~~W~~yv-~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~-g~~--ls~~el~ 77 (381)
++...+|.||+ |+++|+.++++.++....++.|+.+...+++|.|+||+||||+..+.+.|...+. |.+ .++++++
T Consensus 109 ~~~~~~w~ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~ 188 (489)
T KOG0631|consen 109 DPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLA 188 (489)
T ss_pred CCCccchhhhhccchHHHHHHHhccccccCCCcceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 57789999999 9999999999555443322359999999999999999999999999999999987 887 7899999
Q ss_pred HHHHHhhhhhCCCCCcchhhhhhhccCCceEEee--cCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHH
Q 016879 78 QLTCECEQFIGTQSGGMDQAISIMAKSGFAELID--FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECR 155 (381)
Q Consensus 78 ~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~--~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~ 155 (381)
.++..+|+++|.++|||||.++++|..+++++++ +.|++...+++|+.-.|+|.++.+..++..++.++||.|+.||.
T Consensus 189 ~i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~v~~~~~Pf~~~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ 268 (489)
T KOG0631|consen 189 TITVVAESYIGLNSGGMDQAASVLAEKGHALLVDPYFTPFRRSMLKLPDGGVFVIANSLVESNKAETAETNYNLRVVEGT 268 (489)
T ss_pred cceEEeecccCcCCCcHHHHHHHHHhcCceEEecccCCccccccccCCCCceEEEechhhhhcchhhhhhhhhceeEeee
Confidence 9999999999999999999999999999999999 56888888888877799999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCch
Q 016879 156 LTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSL 235 (381)
Q Consensus 156 ~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (381)
.+...+.+|+++...+.+..+...+. -+. ....|..+.++|+..|.+.+.++||+.+|+.+.++.+.+.+.++++-..
T Consensus 269 ia~~~la~k~~~~~~~~~~~~~~~~~-~~~-~i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~T~~ 346 (489)
T KOG0631|consen 269 IAAGELAAKILVELPAYILRYQLQRA-WRG-DIGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQSLLTLA 346 (489)
T ss_pred hhhHHHHHHhhcccHHHHHhhhhhhc-ccc-ccchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHHHhcccc
Confidence 99999999998876533222222221 000 0111122345677778888888899999999999999988888888777
Q ss_pred hHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcCC-CchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCC
Q 016879 236 DVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL-SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGA 314 (381)
Q Consensus 236 ~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~~-~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga 314 (381)
++ ....+++++|++|+++|+.|+.++..++.+.. ..++.+..||+||+++|.+++.+|++|||++|+|+++++++|.
T Consensus 347 ~v--~~~~~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpel~qL~kiala~g~ 424 (489)
T KOG0631|consen 347 AV--DLQVKKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPELDQLCKIALANGG 424 (489)
T ss_pred ch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHhHHHHHHHHHhcCC
Confidence 66 55667889999999999999999999998853 1226689999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeeccC
Q 016879 315 LGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 381 (381)
Q Consensus 315 ~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 381 (381)
+|+|+||||||||++++++.+..+.+.+++++.||++.. +.++++.....+++++|+.|+.++++
T Consensus 425 ~gaRlTGaGwGGc~v~lvp~d~~~~~~~~~~~~~Y~ka~--~~~~~~~~k~~~~~skp~~g~~l~el 489 (489)
T KOG0631|consen 425 VGARLTGAGWGGCTVALVPADLVDFAVAALKEIYYEKAY--PKFAQDELKKALIVSKPAAGVLLLEL 489 (489)
T ss_pred ccceeeccccccceeeeccccchHHHHHhhhhhhhcccc--chhhhchhhceEEEecCchhhhhccC
Confidence 999999999999999999989999999999999998876 77888888888999999999998864
No 10
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=2e-44 Score=355.13 Aligned_cols=290 Identities=30% Similarity=0.432 Sum_probs=248.3
Q ss_pred CCCCccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 016879 3 PLFHLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCE 82 (381)
Q Consensus 3 ~~~~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~ 82 (381)
+....|.+|+ ++++..+.+.+.. ..||+++++|+||+++|||||||+++|++.|++.+++.++++++++++|.+
T Consensus 61 ~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~ 134 (351)
T PRK03817 61 EKLNSWADYI---KGVIWVLEKRGYE---VGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLARE 134 (351)
T ss_pred CCCCchHHHH---HHHHHHHHHcCCC---CCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3457899999 7777777766653 479999999999999999999999999999999999999999999999999
Q ss_pred hhh-hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHH
Q 016879 83 CEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVL 161 (381)
Q Consensus 83 ~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l 161 (381)
+|+ +.|.++|.|||+++.+|+.+.++++++.+..+.++++|.+++|++++|+.+ +.+....||.|+.+|+.+++.|
T Consensus 135 ~E~~~~g~~~g~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~sg~~---~~~~~~~~~~~~~~~~~~~~~l 211 (351)
T PRK03817 135 AENEFVGVPCGIMDQFAVAFGKKDHAIFLDTMTLEYEYVPFPEDYEILVFDTGVK---RELASSEYNERRQECEEALKIL 211 (351)
T ss_pred hcccccCCCCcCchhhheeeccCCEEEEEecCCCceEEEecCCCcEEEEEeCCCc---cccccchhHHHHHHHHHHHHHh
Confidence 996 789999999999999999888889999888788899999999999999984 4455678999999999998877
Q ss_pred HHHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhh
Q 016879 162 AIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAA 241 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (381)
+.. +++++ +.+++.. +
T Consensus 212 ~~~-------------~~~~~-----------------------------~~~~~~~--------l-------------- 227 (351)
T PRK03817 212 GKK-------------SSKEV-----------------------------TEEDLSK--------L-------------- 227 (351)
T ss_pred Ccc-------------chhcC-----------------------------CHHHHHh--------C--------------
Confidence 543 22221 1011100 0
Q ss_pred hhHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcC
Q 016879 242 KQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTG 321 (381)
Q Consensus 242 ~~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sG 321 (381)
...+++|+.|++.|+.|+.+++.+|+++ |++.||++|+++|..+++.|++++|++|.|++.+++.|++|+||||
T Consensus 228 -~~~~~~~~~~~v~e~~r~~~~~~al~~~-----d~~~lg~l~~~s~~~l~~~~~~s~p~ld~l~~~a~~~GalGaklsG 301 (351)
T PRK03817 228 -PPLLRKRAGYVLRENERVLKVRDALKEG-----DIETLGELLTESHWDLADNYEVSCEELDFFVEFALELGAYGARLTG 301 (351)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHcCCCEEEEec
Confidence 0135788999999999999999999986 5999999999999999998999999999999999999999999999
Q ss_pred CCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeecc
Q 016879 322 AGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 380 (381)
Q Consensus 322 aG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 380 (381)
||||||+++|++++.++++++.+++.|.+... ..+.+|++.|+.|+++++
T Consensus 302 aG~Gg~vlal~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~G~~~~~ 351 (351)
T PRK03817 302 AGFGGSAIALVDKGKFESIGEELLEEYKKRFG---------IDPKYFVVESSDGVRKIE 351 (351)
T ss_pred CCCCeEEEEEEchHHHHHHHHHHHHHHHHhcC---------CCCcEEEEecCCCceeCC
Confidence 99999999999988899999999999876542 367899999999999874
No 11
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=3.4e-33 Score=266.60 Aligned_cols=233 Identities=27% Similarity=0.388 Sum_probs=170.4
Q ss_pred hhh-hHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhC
Q 016879 10 FVF-FRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIG 88 (381)
Q Consensus 10 ~yv-~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g 88 (381)
.|+ +++..+-+++.. .+..||+++|.|+||+++|||||||++|+++.|++.++|..+++++++++++++|..+|
T Consensus 63 ~~~~~~v~~~~e~~~~-----~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vq 137 (307)
T COG1577 63 GYIQAAVRLASELLNQ-----SSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQ 137 (307)
T ss_pred hHHHHHHHHHHHHhcc-----cCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHc
Confidence 566 444444444332 12479999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCC
Q 016879 89 TQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMK 168 (381)
Q Consensus 89 ~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~ 168 (381)
+++|++|.++++|||. +++... ...+++.++..-.|++.|++++..+.
T Consensus 138 G~~Sg~D~a~~~~gg~---v~~~~~-~~~~~l~~~~~~~~~I~~tg~~~sT~---------------------------- 185 (307)
T COG1577 138 GKASGIDIATITYGGL---VAFKKG-FDFEKLEIELLGTLVIGDTGVPGSTK---------------------------- 185 (307)
T ss_pred CCCCcccceEEEeCCE---EEEecC-CCccccccccCCeEEEEEcCCcCcHH----------------------------
Confidence 9999999999999993 333321 23445555543478999999864322
Q ss_pred chhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHH
Q 016879 169 PQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQ 248 (381)
Q Consensus 169 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
+++..|++.+++.+....++ ++
T Consensus 186 ----------------------------e~V~~V~~l~~~~~~~~~~~------------------------------~~ 207 (307)
T COG1577 186 ----------------------------ELVAGVAKLLEEEPEVIDPI------------------------------LD 207 (307)
T ss_pred ----------------------------HHHHHHHHHHHhhhHHHHHH------------------------------HH
Confidence 22333433332221000111 11
Q ss_pred HHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceE
Q 016879 249 RAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCV 328 (381)
Q Consensus 249 r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~v 328 (381)
..- .-+.++..+++++ |.+.||++|+.+|..|..+ +||+|++|+|++.++++|++|||+||||+|||+
T Consensus 208 ~ig------~~~~~a~~al~~~-----d~e~lgelm~~nq~LL~~L-gVs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~ 275 (307)
T COG1577 208 AIG------ELVQEAEAALQTG-----DFEELGELMNINQGLLKAL-GVSTPELDELVEAARSLGALGAKLTGAGGGGCI 275 (307)
T ss_pred HHH------HHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHhc-CcCcHHHHHHHHHHHhcCccccccccCCCCceE
Confidence 111 2233455677764 5999999999999999998 799999999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHHHhcc
Q 016879 329 VALVKESIDSQFILNLKEQFYQSR 352 (381)
Q Consensus 329 i~l~~~~~~~~~~~~l~~~~~~~~ 352 (381)
|+|++..+ . .+.+.+.+++.+
T Consensus 276 IaL~~~~~--~-~~~l~~~~~~~~ 296 (307)
T COG1577 276 IALAKNEE--I-AETLSNRLEKAG 296 (307)
T ss_pred EEEeccch--H-HHHHHHHHHhcC
Confidence 99998622 1 344555554443
No 12
>PLN02677 mevalonate kinase
Probab=100.00 E-value=9.9e-33 Score=272.78 Aligned_cols=236 Identities=22% Similarity=0.298 Sum_probs=173.8
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCC-CC-------------CHHHHHHHHHHhhhhhCCCCCcchhhh
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGV-EV-------------PKKEIAQLTCECEQFIGTQSGGMDQAI 98 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~-~l-------------s~~el~~la~~~E~~~g~~~g~~D~~~ 98 (381)
.+++++|+|+||+|+|||||||++||++.|++.+++. ++ +.+++.++|..+|+.+|+++|++|+++
T Consensus 128 ~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGiD~a~ 207 (387)
T PLN02677 128 NPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGIDNTV 207 (387)
T ss_pred CCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCchhHHH
Confidence 5799999999999999999999999999999999983 22 236888999999998877777889999
Q ss_pred hhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhccc
Q 016879 99 SIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKT 178 (381)
Q Consensus 99 ~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~ 178 (381)
++||| .+.|+...+++++.|.+++++|+||++++++.
T Consensus 208 s~~Gg-----~I~f~~~~~~~l~~~~~l~llv~dTgv~~sT~-------------------------------------- 244 (387)
T PLN02677 208 STYGN-----MIKFKSGELTRLQSNMPLKMLITNTRVGRNTK-------------------------------------- 244 (387)
T ss_pred HhcCC-----eEEEcCCCceecCCCCCceEEEEECCCCCcHH--------------------------------------
Confidence 99998 35555555667777778999999999975433
Q ss_pred chhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHH
Q 016879 179 LSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAK 258 (381)
Q Consensus 179 L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~ 258 (381)
++|+.|++...+.|-. +.. +.+...+
T Consensus 245 ------------------~lV~~V~~~~~~~p~~---~~~---------------------------il~~~~~------ 270 (387)
T PLN02677 245 ------------------ALVAGVSERALRHPDA---MKS---------------------------VFNAVDS------ 270 (387)
T ss_pred ------------------HHHHHHHHHHHhCHHH---HHH---------------------------HHHHHHH------
Confidence 2334444443332100 110 1122222
Q ss_pred hHHHHHHHHhc--CCC--chHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeC
Q 016879 259 RVHAFKDTVSS--NLS--EEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE 334 (381)
Q Consensus 259 r~~~~~~al~~--~~~--~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~ 334 (381)
-+.++.++|++ ++. .++|++.|+++|+.+|..|+.+ |||+|.+|.+++++.+.| +|||+||||+|||+|+|+++
T Consensus 271 i~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~L-GVS~~~le~iv~~a~~~~-~~AKlTGAGgGGC~IaL~~~ 348 (387)
T PLN02677 271 ISEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCM-GVSHSSIETVLRTTLKYK-LVSKLTGAGGGGCVLTLLPT 348 (387)
T ss_pred HHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHcC-CccccccCCCCCEEEEEccc
Confidence 23455667766 221 1257999999999999999988 799999999999999985 79999999999999999976
Q ss_pred CcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeec
Q 016879 335 SIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 379 (381)
Q Consensus 335 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 379 (381)
+..+..++.+.+++.+.++ ..|.+..+. |.+|.
T Consensus 349 ~~~~~~~~~l~~~l~~~G~------------~~~~~~~g~~Gv~~~ 382 (387)
T PLN02677 349 LLSGTVVDKVIAELESSGF------------QCFTAGIGGNGVQIC 382 (387)
T ss_pred ccchhHHHHHHHHHHHCCC------------eEEEEEeCCCceEEE
Confidence 4444444555555555443 567777655 77764
No 13
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=100.00 E-value=2.9e-32 Score=259.47 Aligned_cols=217 Identities=29% Similarity=0.427 Sum_probs=161.9
Q ss_pred CCccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 016879 5 FHLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 84 (381)
Q Consensus 5 ~~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E 84 (381)
...|.+|+ +++++.+...+ ..++++++.|+||.++|||||||+++|++.|++.+++.++++++++++|.++|
T Consensus 57 ~~~~~~~v---~~~l~~~~~~~-----~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E 128 (273)
T TIGR00549 57 LDGLVSYI---AEALSYFSELN-----PPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAE 128 (273)
T ss_pred HHHHHHHH---HHHHHHhhccC-----CCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 46699999 77777776432 23599999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHH
Q 016879 85 QFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 164 (381)
Q Consensus 85 ~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~ 164 (381)
+.+++.++++||+++++|| +++++.... ...++.+.++.+++++|+.++++... .
T Consensus 129 ~~~~G~~sG~D~~~~~~Gg---~~~~~~~~~-~~~~~~~~~~~lvl~~tg~~~~T~~~---------------~------ 183 (273)
T TIGR00549 129 KIAHGKPSGIDTATSTYGG---PVYFEKGEG-EFTKLISLDGYFVIADTGVSGSTKEA---------------V------ 183 (273)
T ss_pred HHhCCCCchHhHHHHhcCC---eEEEEcCCC-ceeeccCCCeEEEEEECCCCCcHHHH---------------H------
Confidence 8554444457999999998 445554432 22444455788999999985432211 0
Q ss_pred hCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhH
Q 016879 165 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 244 (381)
Q Consensus 165 ~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+.|++.....+ +.+..
T Consensus 184 -----------------------------------~~v~~~~~~~~---~~~~~-------------------------- 199 (273)
T TIGR00549 184 -----------------------------------ARVRQLLERFP---ELIDS-------------------------- 199 (273)
T ss_pred -----------------------------------HHHHHHHHhCH---HHHHH--------------------------
Confidence 00111100000 00000
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCC
Q 016879 245 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGW 324 (381)
Q Consensus 245 ~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~ 324 (381)
..+++ ..++.+++.+|.++ |++.||++|+++|..+++. ++++|++|+|++.+++.|++|+||||||+
T Consensus 200 -~~~~~------~~~~~~~~~al~~~-----d~~~lg~l~~~~~~~l~~~-~vs~p~l~~l~~~~~~~Ga~gaklsGaG~ 266 (273)
T TIGR00549 200 -IMDAI------GELTLEAKAALQDG-----DVESLGELMNINQGLLKAL-GVSHPKLDQLVETARKAGALGAKLTGAGG 266 (273)
T ss_pred -HHHHH------HHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHCCCceeeeccCCC
Confidence 11111 13566778889876 5999999999999998864 89999999999999999999999999999
Q ss_pred cceEEEE
Q 016879 325 GGCVVAL 331 (381)
Q Consensus 325 GG~vi~l 331 (381)
|||+++|
T Consensus 267 GG~~i~l 273 (273)
T TIGR00549 267 GGCMIAL 273 (273)
T ss_pred CceEEeC
Confidence 9999986
No 14
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=100.00 E-value=1.4e-31 Score=263.99 Aligned_cols=238 Identities=16% Similarity=0.187 Sum_probs=176.2
Q ss_pred Cccchhh-hHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCC----CCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 016879 6 HLWCFVF-FRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTG----SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLT 80 (381)
Q Consensus 6 ~~W~~yv-~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g----~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la 80 (381)
..|.+|+ .++..+..++...+.. .+||++.|.|+||++ +|||||||++||++.|++.+++.++++++++++|
T Consensus 74 ~~~~~~v~~~i~~~~~~~~~~~~~---~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA 150 (358)
T TIGR01220 74 RSALAYVVSAIETVERYAGERNQK---LPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLA 150 (358)
T ss_pred ccchHHHHHHHHHHHHHHHhcCCC---CCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4799999 4443344455555543 369999999999984 6999999999999999999999999999999999
Q ss_pred HHhhhhhCCCCCcchhhhhhhccCCceEEeecC----------------------CCeeEEeecCCCcEEEEEeCCcchh
Q 016879 81 CECEQFIGTQSGGMDQAISIMAKSGFAELIDFN----------------------PIRTTDVQLPAGGTFVVAHSLAESL 138 (381)
Q Consensus 81 ~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~----------------------~~~~~~i~~~~~~~~ll~~s~~~~~ 138 (381)
+.+|+.+|.++|+.|+++++|||. +.|-++. +..++++++|+++++++++|+++++
T Consensus 151 ~~~E~~~~g~~sg~D~~a~~~GG~--i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~l~v~~tg~~~~ 228 (358)
T TIGR01220 151 MLATAELQPKGSCGDIAASTYGGW--IAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGSPAS 228 (358)
T ss_pred HHHHhhhCCCCCcchhhhhhhCCE--EEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCCCCCEEEEEeCCCCcC
Confidence 999988887788889999999984 3332332 2246778888889999999998643
Q ss_pred hhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHH
Q 016879 139 KAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEK 218 (381)
Q Consensus 139 ~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 218 (381)
+. ++++.|++...+.+ +.+..
T Consensus 229 T~--------------------------------------------------------~~v~~V~~~~~~~~---~~~~~ 249 (358)
T TIGR01220 229 TA--------------------------------------------------------SLVSDVHRRKWRGS---ASYQR 249 (358)
T ss_pred cH--------------------------------------------------------HHHHHHHHHhhcCh---HHHHH
Confidence 22 12222222221110 00000
Q ss_pred HhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhh----
Q 016879 219 ITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL---- 294 (381)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~---- 294 (381)
+.++.. ..+.++.++|.++ |++.|+++|+++|..|+.+
T Consensus 250 ---------------------------~l~~~~------~i~~~~~~al~~~-----d~~~lg~~~~~~~~lL~~l~~~~ 291 (358)
T TIGR01220 250 ---------------------------FLETST------DCVESAITAFETG-----DITSLQKEIRRNRQELARLDDEV 291 (358)
T ss_pred ---------------------------HHHHHH------HHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHhhccc
Confidence 111121 2344667888875 5999999999999999976
Q ss_pred -ccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeC-CcHHHHHHHHHH
Q 016879 295 -YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKE 346 (381)
Q Consensus 295 -~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~-~~~~~~~~~l~~ 346 (381)
.++++|++++|++.++++|+ |+|+||||+|||+|+|+++ +.++++.++|++
T Consensus 292 ~~~vs~~~l~~li~~a~~~ga-~aKlsGAGgGg~~ial~~~~~~~~~~~~~~~~ 344 (358)
T TIGR01220 292 GVGIETEKLKALCDAAEAYGG-AAKPSGAGGGDCGIAILDAEADITHVRQRWET 344 (358)
T ss_pred CCCcCCHHHHHHHHHHhhcCc-eecCCCCCCcCEEEEEeCCchhHHHHHHHHHH
Confidence 37999999999999999998 9999999999999999975 345555555543
No 15
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=1.1e-30 Score=255.17 Aligned_cols=219 Identities=23% Similarity=0.339 Sum_probs=167.3
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEeec
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 112 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~ 112 (381)
.|++++|.++||+++|||||||++||++.+++++++.++++++++++|..+|+.++..++++|++++++||. .++..
T Consensus 93 ~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG~D~~~~~~Gg~---~~~~~ 169 (328)
T PTZ00298 93 DGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSGADNTAATYGGL---ISYRR 169 (328)
T ss_pred CCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHcCCe---EEEec
Confidence 599999999999999999999999999999999999999999999999999985544444569999999984 34332
Q ss_pred -CC-CeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhh
Q 016879 113 -NP-IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 190 (381)
Q Consensus 113 -~~-~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 190 (381)
.. ..+.++++|.++.+++++|+++.++... |.
T Consensus 170 ~~g~~~~~~l~~~~~~~lvv~~~~~~~sT~~~----~~------------------------------------------ 203 (328)
T PTZ00298 170 VNGKSVFKRIAFQQPLYLVVCSTGITASTTKV----VG------------------------------------------ 203 (328)
T ss_pred CCCccceeEecCCCCCeEEEEECCCchhHHHH----HH------------------------------------------
Confidence 22 2456777777889999999985432111 10
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcC
Q 016879 191 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 270 (381)
Q Consensus 191 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~ 270 (381)
.+++.....+ +.+. .+.++..| ++.++..+|.++
T Consensus 204 ----------~v~~~~~~~p---~~~~---------------------------~~~~~~~~------~~~~~~~al~~~ 237 (328)
T PTZ00298 204 ----------DVRKLKENQP---TWFN---------------------------RLLENYNA------CVSEAKEALQKG 237 (328)
T ss_pred ----------HHHHHHhcCH---HHHH---------------------------HHHHHHHH------HHHHHHHHHHcC
Confidence 0000000000 0000 11223333 345677788775
Q ss_pred CCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeC-CcHHHHHHHHHHHHH
Q 016879 271 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFY 349 (381)
Q Consensus 271 ~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~-~~~~~~~~~l~~~~~ 349 (381)
|++.|+++|+++|..++.. ++++|+++++++.+++.|++|+||||+|+|||+++|+++ +.++++.+.+++.|.
T Consensus 238 -----d~~~lg~~m~~~~~~l~~~-~v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~~~~ 311 (328)
T PTZ00298 238 -----NLFRVGELMNANHDLCQKL-TVSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAASEDQRDAIAKAVRARCP 311 (328)
T ss_pred -----CHHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHhCCCceeEeccCCCCeEEEEEecchhhHHHHHHHHHHHhh
Confidence 5999999999999999865 789999999999999999999999999999999999976 678899999988887
Q ss_pred hcc
Q 016879 350 QSR 352 (381)
Q Consensus 350 ~~~ 352 (381)
+.+
T Consensus 312 ~~~ 314 (328)
T PTZ00298 312 EAK 314 (328)
T ss_pred hcC
Confidence 654
No 16
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.97 E-value=8.5e-30 Score=272.18 Aligned_cols=213 Identities=18% Similarity=0.241 Sum_probs=161.4
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEeec
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 112 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~ 112 (381)
.|++++|.|+||+|+|||||||++||++.|++++++.++++++++++|..+|+.+|+++|++||+++++||. .++++
T Consensus 725 ~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG~---~~i~~ 801 (974)
T PRK13412 725 SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPGV---KLLQT 801 (974)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCCe---EEEEe
Confidence 599999999999999999999999999999999999999999999999999999999999999999999994 45554
Q ss_pred CC-----CeeEEeecCC------CcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchh
Q 016879 113 NP-----IRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSD 181 (381)
Q Consensus 113 ~~-----~~~~~i~~~~------~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~ 181 (381)
.+ ..+.+++.+. +-+++|++|++++.+...
T Consensus 802 ~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~i--------------------------------------- 842 (974)
T PRK13412 802 GAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKGI--------------------------------------- 842 (974)
T ss_pred cCCcccCcceeecCcchhhhhhccCcEEEEECCCeeeHHHH---------------------------------------
Confidence 43 1233444332 346899999985432211
Q ss_pred hhhhhhhhhcCCCCCChhHH-HHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhH
Q 016879 182 VEGLCVAFACKNGSSDPVFA-VKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV 260 (381)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~ 260 (381)
++. ++.+.... +.... +.+++.. -+
T Consensus 843 -----------------V~~Vv~~~~~~~----~~~~~---------------------------~l~~ig~------La 868 (974)
T PRK13412 843 -----------------LAEIVRSMFLNS----TAHLQ---------------------------LLHEMKA------HA 868 (974)
T ss_pred -----------------HHHHHHHHHhCc----HHHHH---------------------------HHHHHHH------HH
Confidence 111 11111110 00000 1111111 24
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhh-ccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeC-CcHH
Q 016879 261 HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDS 338 (381)
Q Consensus 261 ~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~-~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~-~~~~ 338 (381)
.++.++|.++ |++.||++|+++|..++.+ -++|+|++|+|++.|++ |++|+|+||||+|||+++++++ +.++
T Consensus 869 ~ea~~ALe~g-----D~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~-gAlGaKLTGAGGGGcvI~Lak~~~~a~ 942 (974)
T PRK13412 869 LDMYEAIQRG-----EFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKD-YTLGYKLPGAGGGGYLYMVAKDPGAAE 942 (974)
T ss_pred HHHHHHHHcC-----CHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHc-CCcEEEecccCcccEEEEEECChhhHH
Confidence 4567888876 5999999999999998887 37999999999999965 7999999999999999999964 5677
Q ss_pred HHHHHHHHH
Q 016879 339 QFILNLKEQ 347 (381)
Q Consensus 339 ~~~~~l~~~ 347 (381)
++.+++++.
T Consensus 943 ~I~~~L~~~ 951 (974)
T PRK13412 943 RIRKILTEN 951 (974)
T ss_pred HHHHHHHhc
Confidence 888888653
No 17
>PRK03926 mevalonate kinase; Provisional
Probab=99.97 E-value=2.8e-29 Score=242.51 Aligned_cols=245 Identities=24% Similarity=0.280 Sum_probs=175.5
Q ss_pred ccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhh
Q 016879 7 LWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF 86 (381)
Q Consensus 7 ~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~ 86 (381)
.|.+|+ ..++..+.+... .+|+++++.++||+++|||||||+++|++.+++++++.++++++++++|.++|..
T Consensus 55 ~~~~~~---~~~~~~~~~~~~----~~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~ 127 (302)
T PRK03926 55 EKHPYV---SAAIEKMREEAD----KDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELL 127 (302)
T ss_pred chhHHH---HHHHHHHHHhcC----CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 577788 555666655432 2499999999999999999999999999999999999999999999999999985
Q ss_pred hCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhC
Q 016879 87 IGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLG 166 (381)
Q Consensus 87 ~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~ 166 (381)
.++.++++|++++++||. +++.+.. ++++| ++.+++++|+.+.++... .+.+
T Consensus 128 ~~G~~sg~D~~~~~~Gg~--~~~~~~~-----~l~~~-~~~~vl~~~~~~~sT~~~---------------~~~~----- 179 (302)
T PRK03926 128 VQGAASPTDTYVSTMGGF--VTIPDRK-----KLPFP-ECGIVVGYTGSSGSTKEL---------------VANV----- 179 (302)
T ss_pred HcCCCchHHHHHHhcCCe--EEEcCCC-----cCCCC-CceEEEEECCCCCcHHHH---------------HHHH-----
Confidence 544555579999999984 3332222 34433 788999999885432110 0000
Q ss_pred CCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHH
Q 016879 167 MKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKL 246 (381)
Q Consensus 167 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
++.....+ +.+.. .
T Consensus 180 ------------------------------------~~~~~~~~---~~~~~---------------------------~ 193 (302)
T PRK03926 180 ------------------------------------RKLKEEYP---ELIEP---------------------------I 193 (302)
T ss_pred ------------------------------------HHHHHhCH---HHHHH---------------------------H
Confidence 00000000 00000 0
Q ss_pred HHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcc
Q 016879 247 HQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGG 326 (381)
Q Consensus 247 ~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG 326 (381)
.....+ .+..+..++.++ |++.|+++|+++|..++ .+++++|+++++++.+++.|++|+||||+|+||
T Consensus 194 ~~~~~~------~~~~~~~al~~~-----d~~~l~~~~~~~~~~~~-~~~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg 261 (302)
T PRK03926 194 LSSIGK------ISEKGEELILSG-----DYVSLGELMNINQGLLD-ALGVSTKELSELIYAARTAGALGAKITGAGGGG 261 (302)
T ss_pred HHHHHH------HHHHHHHHHhcC-----CHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHhCCCceeeeccCCCCC
Confidence 000111 122344667665 59999999999997654 458999999999999999999999999999999
Q ss_pred eEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCC-Cceeecc
Q 016879 327 CVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPS-SGAAKFK 380 (381)
Q Consensus 327 ~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~Ga~v~~ 380 (381)
|++++++++.++++++++++.+ ..++++++. .|+.|.+
T Consensus 262 ~v~~l~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~G~~i~~ 300 (302)
T PRK03926 262 CMVALAAPEKQSEVATAIKIAG----------------GKPIITKITDEGLRIEE 300 (302)
T ss_pred EEEEEeccccHHHHHHHHHhcC----------------CeEEEEecCCCeeEEEe
Confidence 9999998888888888886531 257888885 4998864
No 18
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.97 E-value=2e-29 Score=232.58 Aligned_cols=213 Identities=21% Similarity=0.320 Sum_probs=165.7
Q ss_pred eEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCcchhhhhhhccCCceEEeecC
Q 016879 35 LDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFN 113 (381)
Q Consensus 35 ~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~ 113 (381)
++++..+|+|+|+|||||||+.||++.|+..+-|..+++++|++.|..+|+ .++...|.+||++++|||++ |++|+
T Consensus 90 ~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFn---fMEf~ 166 (333)
T COG2605 90 IELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFN---FMEFR 166 (333)
T ss_pred eEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHHHhCCce---EEEEc
Confidence 999999999999999999999999999999999999999999999999996 88999999999999999987 66665
Q ss_pred C---CeeEEeecCC------CcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhh
Q 016879 114 P---IRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 184 (381)
Q Consensus 114 ~---~~~~~i~~~~------~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~ 184 (381)
+ ..+.++++.. ..+++|+++++.+... +++
T Consensus 167 ~~~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss------------------~V~----------------------- 205 (333)
T COG2605 167 GNGEVVVNPLRINRERTAELEARLLLYYTGITRQSS------------------EVI----------------------- 205 (333)
T ss_pred CCCcEEEeecccchhHHHHHHhceEEEEeccccchh------------------HHH-----------------------
Confidence 5 4455555432 3567777777632111 111
Q ss_pred hhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHH
Q 016879 185 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 264 (381)
Q Consensus 185 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~ 264 (381)
..++++...++. +.++ +.|-+. .-+.++.
T Consensus 206 --------------~dQ~~~~~~~~~---~~~e--------------------------------~~~~mk--~~A~~~~ 234 (333)
T COG2605 206 --------------EDQVRNVVDGDE---ETLE--------------------------------ALHEMK--ALAYEMK 234 (333)
T ss_pred --------------HHHHHHhhcccH---HHHH--------------------------------HHHHHH--HHHHHHH
Confidence 112222222210 0011 111111 1223567
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhHHhhhhc-cCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeCCcHHHHHHH
Q 016879 265 DTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 343 (381)
Q Consensus 265 ~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~-~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~~~~~~~~~ 343 (381)
++|-++ |+.+||++|+.+|+..+.+- ++|+|.+|+|.+.|+++||+|+|++|||+||+++.+|++++.++++++
T Consensus 235 ~al~~n-----d~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~k~~~l~r~ 309 (333)
T COG2605 235 DALVRN-----DIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPSKRNELARA 309 (333)
T ss_pred HHHHhc-----chHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHhcCchhceeeccCCccEEEEEeCccchHHHHHH
Confidence 788765 59999999999999988775 699999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 016879 344 LKEQ 347 (381)
Q Consensus 344 l~~~ 347 (381)
|+..
T Consensus 310 l~~~ 313 (333)
T COG2605 310 LEKE 313 (333)
T ss_pred HHHh
Confidence 9774
No 19
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.96 E-value=4.2e-28 Score=228.45 Aligned_cols=237 Identities=25% Similarity=0.337 Sum_probs=172.4
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCH-----------HHHHHHHHHhhhhhCCCCCcchhhhhhh
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPK-----------KEIAQLTCECEQFIGTQSGGMDQAISIM 101 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~-----------~el~~la~~~E~~~g~~~g~~D~~~~~~ 101 (381)
+.+.+.+.|++|+|+|||||||++|+++++++.++|.--++ +-|-++|...|+..|+.+++.|++.|+|
T Consensus 130 p~~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGiDnaV~t~ 209 (397)
T KOG1511|consen 130 PALTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGIDNAVCTY 209 (397)
T ss_pred cceEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcccchhhhcc
Confidence 34899999999999999999999999999999988763222 3355789999999999999999999999
Q ss_pred ccCCceEEeecCCC-eeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccch
Q 016879 102 AKSGFAELIDFNPI-RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLS 180 (381)
Q Consensus 102 Gg~~~~~~~~~~~~-~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~ 180 (381)
|| .+.|.+- .++.+...+.++++|+||++++++...
T Consensus 210 Gg-----~i~f~kg~~~~~Lk~~~~L~illtnTrv~RnTk~l-------------------------------------- 246 (397)
T KOG1511|consen 210 GG-----LISFKKGVEIESLKHLPPLRILLTNTRVPRNTKAL-------------------------------------- 246 (397)
T ss_pred Cc-----eEEeecCccceecccCCCceEEEEccccCccHHHH--------------------------------------
Confidence 99 4666553 666666556899999999998765432
Q ss_pred hhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhH
Q 016879 181 DVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV 260 (381)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~ 260 (381)
|..|++...+-| ++++.+.++++. ..
T Consensus 247 ------------------Va~Vr~~~~kfP---------------evi~~i~~aid~---------------------is 272 (397)
T KOG1511|consen 247 ------------------VAGVRELLEKFP---------------EVIKAIFDAIDE---------------------IS 272 (397)
T ss_pred ------------------HHHHHHHHHhhh---------------HHHHHHHHHHHH---------------------HH
Confidence 222333222211 111111111111 11
Q ss_pred HHHHHHHhcC-C-CchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeCCcHH
Q 016879 261 HAFKDTVSSN-L-SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDS 338 (381)
Q Consensus 261 ~~~~~al~~~-~-~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~~~~ 338 (381)
.+++.++.+. + .+..+-+.|.++|..||..|..+ ||++|.+|+++..+.+.| +.+||||||+|||+++|++++...
T Consensus 273 ~ea~~il~~e~~~~~~~~Eq~L~eLi~iNq~LL~al-GVsH~~le~v~~~t~k~g-i~sKLTGAGgGGc~itlL~~~~~q 350 (397)
T KOG1511|consen 273 LEAVWILQRENDEFSSPKEQKLEELIRINQDLLDAL-GVSHPSLELVCTTTRKLG-IHSKLTGAGGGGCVITLLKPGTEQ 350 (397)
T ss_pred HHHHHHHhcccccCCCcHHHHHHHHHHHhHHHHHHh-CCCcHHHHHHHHHHHHhC-cceecccCCCCceEEEEECCCCch
Confidence 1233344431 1 01112225999999999999988 899999999999999999 788999999999999999998877
Q ss_pred HHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 016879 339 QFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 380 (381)
Q Consensus 339 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 380 (381)
+.++.++++....+| .+|.+.-+. |++|.+
T Consensus 351 e~i~~~ke~L~s~gf------------~v~~t~lGG~G~~v~s 381 (397)
T KOG1511|consen 351 EQIDKWKEELESHGF------------EVFETELGGPGVSVHS 381 (397)
T ss_pred HHHHHHHHHHHhcCc------------ceeeccCCCCceEEEe
Confidence 888999888876654 577766555 887754
No 20
>PLN02451 homoserine kinase
Probab=99.94 E-value=2.7e-24 Score=212.43 Aligned_cols=228 Identities=21% Similarity=0.294 Sum_probs=167.8
Q ss_pred CCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhh-hhhccCCceEEe
Q 016879 32 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAI-SIMAKSGFAELI 110 (381)
Q Consensus 32 ~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~-~~~Gg~~~~~~~ 110 (381)
+.|++|+|.++||+++|||||||+++|++.+++++++.+++++++++++.++|..++.. .+|+++ +++||. ++..
T Consensus 132 ~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~g~--h~Dnva~a~~GG~--v~~~ 207 (370)
T PLN02451 132 SVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVSGY--HADNIAPALMGGF--VLIR 207 (370)
T ss_pred CCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhcCC--CccchhHhhcCCE--EEEE
Confidence 36999999999999999999999999999999999999999999999999999744332 279986 689974 3333
Q ss_pred ecCCCeeEEeecC--CCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhh
Q 016879 111 DFNPIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVA 188 (381)
Q Consensus 111 ~~~~~~~~~i~~~--~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~ 188 (381)
...+....++++| +++.+++++|+++.+|.. +.+.+.+.
T Consensus 208 ~~~~~~~~~~~~p~~~~~~~Vlv~P~~~~sT~~---------------ar~~lp~~------------------------ 248 (370)
T PLN02451 208 SYEPLHLIPLRFPSAKDLFFVLVSPDFEAPTKK---------------MRAALPKE------------------------ 248 (370)
T ss_pred ecCCCeEEEeecCCCCCeEEEEEcCCCCccHHH---------------HHHHHhhh------------------------
Confidence 3445555566665 579999999987432211 11111000
Q ss_pred hhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHh
Q 016879 189 FACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVS 268 (381)
Q Consensus 189 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~ 268 (381)
+.. ..++. ...|+..++.++.
T Consensus 249 ----------------------~~~------------------------------------~~~v~-~~~~~~~l~~al~ 269 (370)
T PLN02451 249 ----------------------IPM------------------------------------KHHVW-NCSQAAALVAAIL 269 (370)
T ss_pred ----------------------cch------------------------------------hhHHH-HHHHHHHHHHHHH
Confidence 000 00000 0123344567777
Q ss_pred cCCCchHHHHHHHHHHHHH--hHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeC-CcHHHHHHHHH
Q 016879 269 SNLSEEDKLKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLK 345 (381)
Q Consensus 269 ~~~~~~~d~~~lg~lm~~s--h~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~-~~~~~~~~~l~ 345 (381)
++ |++.++++|++. |+..+ ..++|+++++++.+++.|++|++|||+| +|+++|+++ +.++++.++++
T Consensus 270 ~~-----d~~~l~~~m~nD~~~e~~r---~~~~P~l~~l~~~~~~~GA~ga~mSGSG--ptvfal~~~~~~a~~i~~~l~ 339 (370)
T PLN02451 270 QG-----DAVLLGEALSSDKIVEPTR---APLIPGMEAVKKAALEAGAYGCTISGAG--PTAVAVIDDEEKGEEVGERMV 339 (370)
T ss_pred cC-----CHHHHHHHHHHHHHhHHHH---hhhCccHHHHHHHHHHCCCeEEEEEccc--hheEEEEcCHHHHHHHHHHHH
Confidence 75 599999999865 55555 3569999999999999999999999888 899999975 57889999998
Q ss_pred HHHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 016879 346 EQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 380 (381)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 380 (381)
+.|.+... ..+.++++++++ |+++.+
T Consensus 340 ~~~~~~~~---------~~~~~~~~~~d~~Ga~v~~ 366 (370)
T PLN02451 340 EAFRKAGN---------LKATASVKKLDRVGARLVE 366 (370)
T ss_pred HHHHHhcC---------CCceEEEeccCCCCeEEEe
Confidence 88755431 256899999887 998864
No 21
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.92 E-value=3.9e-23 Score=195.78 Aligned_cols=233 Identities=26% Similarity=0.319 Sum_probs=172.2
Q ss_pred HHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcch
Q 016879 16 KAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMD 95 (381)
Q Consensus 16 ~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D 95 (381)
+.+...+++.+.. .+++++++++||.++|||||||.+||.+.|++++++.+++++++.+++...|. --|
T Consensus 63 ~~~~~~~~~~~~~----~~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~Eg-------HpD 131 (299)
T COG0083 63 QAALKFLEALGIE----AGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEG-------HPD 131 (299)
T ss_pred HHHHHHHHHhCCC----ccEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcC-------CCc
Confidence 3445556665653 34999999999999999999999999999999999999999999999999984 248
Q ss_pred hhh-hhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhh
Q 016879 96 QAI-SIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAIS 174 (381)
Q Consensus 96 ~~~-~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~ 174 (381)
+.+ +++||. .+..+..+....++++|.++.++++.|+++.+ | ++++++|
T Consensus 132 NVapa~lGG~--~l~~~~~~~~~~~v~~~~~~~~v~~iP~~e~s---T------------~~aR~vL------------- 181 (299)
T COG0083 132 NVAPAVLGGL--VLVEEESGIISVKVPFPSDLKLVVVIPNFEVS---T------------AEARKVL------------- 181 (299)
T ss_pred hHHHHhhCCE--EEEeecCCceEEEccCCcceEEEEEeCCcccc---H------------HHHHHhc-------------
Confidence 765 899993 33333355677788888899999999988532 2 1233333
Q ss_pred hcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHH
Q 016879 175 KVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVY 254 (381)
Q Consensus 175 ~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 254 (381)
+++ ++.++..
T Consensus 182 --------------------------------P~~-~~~~daV------------------------------------- 191 (299)
T COG0083 182 --------------------------------PKS-YSRKDAV------------------------------------- 191 (299)
T ss_pred --------------------------------ccc-CCHHHHH-------------------------------------
Confidence 322 3322221
Q ss_pred hHHHhHHHHHHHHhcCCCchHHHHHHHHHHH-HHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEe
Q 016879 255 SEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN-DSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVK 333 (381)
Q Consensus 255 ~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~-~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~ 333 (381)
.-..|+.-++.+|.++ |.+.+..+|. .-|+.+|..+ -|.++++.+.++++|++|+.+|||| ++++++++
T Consensus 192 ~n~s~~a~lv~al~~~-----~~~l~~~~~~D~ihepyR~~L---~P~~~~v~~~a~~~gA~g~~lSGAG--PTi~al~~ 261 (299)
T COG0083 192 FNLSRAALLVAALLEG-----DPELLRAMMKDVIHEPYRAKL---VPGYAEVREAALEAGALGATLSGAG--PTVFALAD 261 (299)
T ss_pred HHHHHHHHHHHHHHcC-----CHHHHHHHhccccchhhhhhh---CccHHHHHHHHhhCCceEEEEecCC--CeEEEEec
Confidence 1124566678888876 4777777775 5899999765 8999999999999999999999999 99999998
Q ss_pred CCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEee-CCCceeecc
Q 016879 334 ESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASK-PSSGAAKFK 380 (381)
Q Consensus 334 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~Ga~v~~ 380 (381)
+...++..+.+ +.++++.+ .+.++++. +++|++++.
T Consensus 262 ~~~~e~~~~~~-~~~~~~~~----------~~~~~~~~~~~~G~~~v~ 298 (299)
T COG0083 262 ESDAEKAAALL-EELYEQGI----------KGRVHILALDSDGARVVE 298 (299)
T ss_pred cchhhHHHHHH-HHHHHhCC----------cceEEEEeecCCcceEec
Confidence 87344444444 55544443 45677765 567987763
No 22
>PRK01212 homoserine kinase; Provisional
Probab=99.91 E-value=1.7e-22 Score=195.17 Aligned_cols=219 Identities=25% Similarity=0.310 Sum_probs=161.4
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEe-e
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI-D 111 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~-~ 111 (381)
.|++|+|.++||.++|||||||.++|++.+++++++.+++.++|+++|.++|. ..-|...+++||. .+. +
T Consensus 80 ~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~------~~ddv~~~l~GG~---~~~~~ 150 (301)
T PRK01212 80 PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEG------HPDNVAPALLGGL---VLALE 150 (301)
T ss_pred CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC------CHHHHHHHHhCCE---EEEEE
Confidence 68999999999999999999999999999999999999999999999999984 1224556899984 333 3
Q ss_pred cCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhhc
Q 016879 112 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 191 (381)
Q Consensus 112 ~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 191 (381)
..+..++++++|+++.+++++|+...++.. +.+.
T Consensus 151 g~g~~~~~~~~~~~~~~vlv~p~~~~sT~~---------------a~~~------------------------------- 184 (301)
T PRK01212 151 ENGVISVKIPVFDDLKWVVAIPNIELSTAE---------------ARAV------------------------------- 184 (301)
T ss_pred CCceEEEEecCCCCeEEEEEECCCcCCHHH---------------HHHh-------------------------------
Confidence 556667788877789999999976432111 1000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcCC
Q 016879 192 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 271 (381)
Q Consensus 192 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~~ 271 (381)
+++. +...+ .+.+..|+..+..++.++
T Consensus 185 --------------l~~~-~~~~~-------------------------------------~~~~~~~~~~l~~al~~~- 211 (301)
T PRK01212 185 --------------LPKQ-YSLKD-------------------------------------AVFNSSRAALLVAALYTG- 211 (301)
T ss_pred --------------CcCc-CCHHH-------------------------------------HHHHHHHHHHHHHHHhhC-
Confidence 0000 00000 011123445567788765
Q ss_pred CchHHHHHHHHHHHH-HhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeCCcHHHHHHHHHHHHHh
Q 016879 272 SEEDKLKKLGDLMND-SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQ 350 (381)
Q Consensus 272 ~~~~d~~~lg~lm~~-sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~ 350 (381)
|++.++++|++ .|+.++.. .+|+++++++.+++.|++|++|||+| +|+++|++++..+++.+++++.| .
T Consensus 212 ----d~~~~~~~~~~~~~~~~~~~---~~p~~~~i~~~~~~~Ga~g~~~SGsG--ptv~~l~~~~~~~~~~~~l~~~~-~ 281 (301)
T PRK01212 212 ----DYELAGRAMKDVLHEPYRAK---LIPGFAEVRQAALEAGALGAGISGAG--PTVFALCDKEDAEKVADALQKAF-L 281 (301)
T ss_pred ----CHHHHHHHhchhheHHhHHh---hCCCHHHHHHHHHHCCCeEEEEEchh--hheeEEeccccHHHHHHHHHHhh-c
Confidence 58899999843 45655432 37999999999999999999999988 99999998765588888888776 2
Q ss_pred cccCCCcccCCCCcceEEEeeCCC-ceeec
Q 016879 351 SRIDRGVINNNDLGLYVFASKPSS-GAAKF 379 (381)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 379 (381)
.+ ..+.++++++++ |++++
T Consensus 282 ~~----------~~~~~~~~~~~~~G~~~~ 301 (301)
T PRK01212 282 QG----------IEGFVHVLRLDTAGARVL 301 (301)
T ss_pred cC----------CCeEEEEeccCCCceEeC
Confidence 22 256899999877 98874
No 23
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.90 E-value=1.4e-21 Score=188.96 Aligned_cols=217 Identities=21% Similarity=0.279 Sum_probs=148.7
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchh-hhhhhccCCceEEee
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQ-AISIMAKSGFAELID 111 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~-~~~~~Gg~~~~~~~~ 111 (381)
.|+++++.++||.++|||||||.++|++.+++++++.++++++++++|.++|. -.|+ .++++||. .+..
T Consensus 79 ~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~-------h~Dnv~~~l~GG~---~~~~ 148 (302)
T TIGR00191 79 PPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEG-------HPDNVAPALLGGF---QLAF 148 (302)
T ss_pred CCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcC-------CcccHHHHhccCE---EEEE
Confidence 68999999999999999999999999999999999999999999999999984 1575 56889994 3333
Q ss_pred cCCCeeEEeecC--CCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhh
Q 016879 112 FNPIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 189 (381)
Q Consensus 112 ~~~~~~~~i~~~--~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 189 (381)
.+......+++| +++.+++++|+.+.+|.. +.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~vl~~p~~~~sT~~---------------a~~~l---------------------------- 185 (302)
T TIGR00191 149 VEDDKLEVLKIPIFSKLDWVLAIPNIEVSTAE---------------ARAVL---------------------------- 185 (302)
T ss_pred EcCCceEEEEeCCCCCEEEEEEECCCcccHHH---------------HHHhC----------------------------
Confidence 333334444444 689999999987432211 11111
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhc
Q 016879 190 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 269 (381)
Q Consensus 190 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~ 269 (381)
++. ++..+. +....|+..++.++.+
T Consensus 186 -----------------p~~-~~~~~~-------------------------------------v~~~~~~~~l~~al~~ 210 (302)
T TIGR00191 186 -----------------PKA-YPRQDL-------------------------------------VFNLSHLAGLVHAIYQ 210 (302)
T ss_pred -----------------ccc-CCHHHH-------------------------------------HHHHHHHHHHHHHHHc
Confidence 100 110000 0001122334566766
Q ss_pred CCCchHHHHHHHHHHHHH--hHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeCCcHHHHHHHHHHH
Q 016879 270 NLSEEDKLKKLGDLMNDS--HHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQ 347 (381)
Q Consensus 270 ~~~~~~d~~~lg~lm~~s--h~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~~~ 347 (381)
+ ++ .+++.+.+. |+.++. ..+|+++++++.+++.|++|++|||+| +|+++|++++...+.+.+..+.
T Consensus 211 ~-----~~-~l~~~~~~d~l~e~~~~---~l~p~l~~i~~~~~~~Ga~g~~lSGsG--ptv~al~~~~~~~~~~~~~~~~ 279 (302)
T TIGR00191 211 K-----KP-DLGAIMMKDRIHQPYRE---SLIPNLFKIKQAALEKGAYGITISGSG--PTILAMADEEFAEQKEQDLLEV 279 (302)
T ss_pred C-----CH-HHHHHHcccccchhhHh---hhCCCHHHHHHHHHHCCCeEEEEEchh--hhheEEecchhhHHHHHHHHHH
Confidence 4 24 456665443 566664 359999999999999999999999999 9999999876544434333344
Q ss_pred HHhcccCCCcccCCCCcceEEEeeCCC-ceee
Q 016879 348 FYQSRIDRGVINNNDLGLYVFASKPSS-GAAK 378 (381)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v 378 (381)
+++.+ .++.++++++++ |+++
T Consensus 280 ~~~~~----------~~~~~~~~~~~~~Ga~~ 301 (302)
T TIGR00191 280 LHKQG----------IEGTVHVLDFDNDGARV 301 (302)
T ss_pred HHhcC----------CCeEEEEcccCCCCeEe
Confidence 43322 256899999877 9875
No 24
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.89 E-value=4.6e-21 Score=192.29 Aligned_cols=263 Identities=16% Similarity=0.158 Sum_probs=166.6
Q ss_pred hh-hHHHHHHHHHHHcCCCCCCCCCeEEEEEcCC-------------------CC--------CCCCChhHHHHHHHHHH
Q 016879 11 VF-FRYKAFYEYVKAKGLDVGPPVGLDILVDGTV-------------------PT--------GSGLSSSTAFVCSSTVA 62 (381)
Q Consensus 11 yv-~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~I-------------------P~--------g~GLGSSaA~~va~~~a 62 (381)
|| .++.-+..++...+.......+++|+|.||. +. +.|||||||++||++.|
T Consensus 89 fv~~ai~~~~~y~~~~~~~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSAAvtVa~v~A 168 (454)
T TIGR01219 89 FIQYAIAAVHLYFDKESLHKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSAAMTTALVAA 168 (454)
T ss_pred HHHHHHHHHHHHHHhccccccccCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHHHHHHHHHHH
Confidence 55 7777788888775432112468999998777 22 69999999999999999
Q ss_pred HHHHhCCCC-------------CHHHHHHHHHHhhhhhCC-CCCcchhhhhhhccCCceEEeecCCC-------------
Q 016879 63 LMAAFGVEV-------------PKKEIAQLTCECEQFIGT-QSGGMDQAISIMAKSGFAELIDFNPI------------- 115 (381)
Q Consensus 63 l~~~~g~~l-------------s~~el~~la~~~E~~~g~-~~g~~D~~~~~~Gg~~~~~~~~~~~~------------- 115 (381)
|+.+++..+ +++.+.++|+.+|..+++ ++|+.|.++++||| +.|..|.+-
T Consensus 169 Ll~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~DvAaavyGg---i~Y~rfd~~~l~~~~~~~~~~~ 245 (454)
T TIGR01219 169 LLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRRFSPELISFLQVAITGLP 245 (454)
T ss_pred HHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCchhhhhhhcCc---eEEEecChhhhhhhhccccccc
Confidence 999999877 789999999999987766 68899999999999 567777652
Q ss_pred ---------------eeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccch
Q 016879 116 ---------------RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLS 180 (381)
Q Consensus 116 ---------------~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~ 180 (381)
.++++++|+++++++
T Consensus 246 ~~~~L~~~v~~~W~~~i~~l~lP~~l~Llv-------------------------------------------------- 275 (454)
T TIGR01219 246 LNEVLGTIVKGKWDNKRTEFSLPPLMNLFM-------------------------------------------------- 275 (454)
T ss_pred hhhhHHHHhccCCCCceeeccCCCCCEEEE--------------------------------------------------
Confidence 112233333444444
Q ss_pred hhhhhhhhhhcCC-CCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHH-H
Q 016879 181 DVEGLCVAFACKN-GSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEA-K 258 (381)
Q Consensus 181 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~-~ 258 (381)
.|||.. +|.+||+.|++|....+...+++-+.++..-+.+.. ...+....-.+. .
T Consensus 276 -------gdtg~~ssT~~lV~~V~~~~~~~p~~s~~i~~~l~~aN~~~~~----------------~l~~l~~~~~~~~~ 332 (454)
T TIGR01219 276 -------GDPGGGSSTPSMVGKVKKWQMSDPEESRENWQNLSDANLELET----------------KLNDLSKLAKDHWD 332 (454)
T ss_pred -------EcCCCCcCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH----------------HHHhhhhhhccccc
Confidence 455544 344677777777665543333332222111000000 000000000000 0
Q ss_pred hHHHHHHHHhcCCC---chHHHHHHHHHHHHHhHHhhhhc-----cCCChHHHHHHHHHHh-CCCcEEEEcCCCCcceEE
Q 016879 259 RVHAFKDTVSSNLS---EEDKLKKLGDLMNDSHHSCSVLY-----ECSCPELEELVNVCRN-NGALGARLTGAGWGGCVV 329 (381)
Q Consensus 259 r~~~~~~al~~~~~---~~~d~~~lg~lm~~sh~~lr~~~-----~vs~peld~l~~~a~~-~Ga~Gak~sGaG~GG~vi 329 (381)
--..+.+.+.++.. ...++..+.+.|..+...||... .+-+|++-+|++.+.+ .||+|++.+|||||.|++
T Consensus 333 ~y~~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t~Lld~~~~~~Gvl~a~vpGAGGgDa~~ 412 (454)
T TIGR01219 333 VYLRVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEASVDIEPESQTQLLDSTMSLEGVLLAGVPGAGGFDAIF 412 (454)
T ss_pred hhhhhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHHHHHHHHhhcCCeeEeecCCCCccceEE
Confidence 00011222322200 00157778888888888887664 3569999999999987 699999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHHHhc
Q 016879 330 ALVKESIDSQFILNLKEQFYQS 351 (381)
Q Consensus 330 ~l~~~~~~~~~~~~l~~~~~~~ 351 (381)
+|+.++. ++++.+.+.|...
T Consensus 413 ~l~~~~~--~~~~~~~~~W~~~ 432 (454)
T TIGR01219 413 AITLGDV--DSGTKLTQAWSSH 432 (454)
T ss_pred EEecCCh--HHHHHHHHHHhhC
Confidence 9986643 2555566666443
No 25
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.89 E-value=3.8e-21 Score=181.95 Aligned_cols=113 Identities=26% Similarity=0.282 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhC--CCCCc
Q 016879 16 KAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIG--TQSGG 93 (381)
Q Consensus 16 ~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g--~~~g~ 93 (381)
..++..+.+.... +.|+++++.++||.++|||||||+++|++.|++++++.+++++++++++.++|+..+ ..+|.
T Consensus 49 ~~~~~~~~~~~~~---~~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~ 125 (261)
T TIGR01920 49 ERILTAIRSKFGI---VDGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAF 125 (261)
T ss_pred HHHHHHHHHhcCC---CCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcH
Confidence 4555666654331 469999999999999999999999999999999999999999999999999998665 56788
Q ss_pred chhhhhhhccCCceEEeecCCCeeE-EeecCCCcEEEEEeCCc
Q 016879 94 MDQAISIMAKSGFAELIDFNPIRTT-DVQLPAGGTFVVAHSLA 135 (381)
Q Consensus 94 ~D~~~~~~Gg~~~~~~~~~~~~~~~-~i~~~~~~~~ll~~s~~ 135 (381)
+|++++++|| +++.+.++.... ..++| +..+++++|+.
T Consensus 126 ~D~~~~~~gG---~~~~~~~~~~~~~~~~~~-~~~~vv~~p~~ 164 (261)
T TIGR01920 126 DDAAASYLGG---IVITDNRRMKILKRDKLE-GCTAAVLVPKE 164 (261)
T ss_pred HHHHHHHhCC---EEEEeCCCceEEEecCCC-CceEEEEECCC
Confidence 8999999999 456666554333 33433 45778888765
No 26
>PTZ00299 homoserine kinase; Provisional
Probab=99.88 E-value=9.6e-21 Score=184.45 Aligned_cols=224 Identities=22% Similarity=0.207 Sum_probs=160.2
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHhhhhhCCCCCcchhh-hhhhccCCceE
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVP---KKEIAQLTCECEQFIGTQSGGMDQA-ISIMAKSGFAE 108 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls---~~el~~la~~~E~~~g~~~g~~D~~-~~~~Gg~~~~~ 108 (381)
+|++++++++||.++|||||||.+||.+.+++++++.+++ .++++++|.++|- -.|+. .+++||.. +.
T Consensus 81 ~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~EG-------HpDNVapal~GG~~-~~ 152 (336)
T PTZ00299 81 PPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEG-------HPDNAAPAIYGGIQ-LV 152 (336)
T ss_pred CceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhcC-------CcccHHHHHhCCEE-EE
Confidence 5899999999999999999999999999999999999995 8999999999982 25854 58999952 11
Q ss_pred EeecC-CCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhh
Q 016879 109 LIDFN-PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 187 (381)
Q Consensus 109 ~~~~~-~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~ 187 (381)
+.+.. .....+++.|+++.++++.|++.- +.+| +.++
T Consensus 153 ~~~~~ge~~~~~i~~~~~~~~vv~iP~~~~-~~sT------------~~aR----------------------------- 190 (336)
T PTZ00299 153 YKKDNGRFLTYRVPTPPNLSVVLFVPHNKM-KANT------------HVTR----------------------------- 190 (336)
T ss_pred EecCCCceEEEecCCCCCeEEEEEECCCCc-cccH------------HHHH-----------------------------
Confidence 11111 233456777778999999997621 0111 0111
Q ss_pred hhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHH
Q 016879 188 AFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 267 (381)
Q Consensus 188 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al 267 (381)
+.++++ ++..+. +....|+..++.+|
T Consensus 191 ----------------~vLP~~-v~~~da-------------------------------------v~n~~~~~~lv~al 216 (336)
T PTZ00299 191 ----------------NLIPTS-VSLEDA-------------------------------------VFNISRTSILVLAL 216 (336)
T ss_pred ----------------hhCccc-CcHHHH-------------------------------------HHhhhHHHHHHHHH
Confidence 111211 111110 00112334466788
Q ss_pred hcCCCchHHHHHHHHHHHHHhHHhhh-hccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeC------------
Q 016879 268 SSNLSEEDKLKKLGDLMNDSHHSCSV-LYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE------------ 334 (381)
Q Consensus 268 ~~~~~~~~d~~~lg~lm~~sh~~lr~-~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~------------ 334 (381)
.++ |++.+..+.+..|+..|. . ..|+++.+.+.+++.|++|+.||||| +++++|++.
T Consensus 217 ~~~-----d~~ll~~~~D~lhep~R~~~---liP~~~~v~~~~~~~Ga~g~~lSGSG--PTv~al~~~~~~~~~~~~~~~ 286 (336)
T PTZ00299 217 STG-----DLRMLKSCSDKLHEQQRSDA---LFPHFRPCVKAAREAGAHYAFLSGAG--PSVCALVGGRHGDPLTQPREE 286 (336)
T ss_pred HhC-----CHHHHHhchhcccCcccccc---cCccHHHHHHHHHHCCCeEEEEEchh--hhheEEeccccccccccccch
Confidence 776 488886644557887774 3 38999999999999999999999999 999999972
Q ss_pred CcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 016879 335 SIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 380 (381)
Q Consensus 335 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 380 (381)
+.++++.+++++.|.+.++ .+.++++.++. |+++..
T Consensus 287 ~~~~~i~~~~~~~~~~~~~----------~~~~~~~~~~~~G~~~~~ 323 (336)
T PTZ00299 287 RKAESVAEAMIKAAEAVGV----------AGRVIITQPSDQGVHLVG 323 (336)
T ss_pred hHHHHHHHHHHHHHHHcCC----------ceEEEEccCCCCCcEEEe
Confidence 3467899999888866543 77899999887 998863
No 27
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.87 E-value=7e-21 Score=184.86 Aligned_cols=242 Identities=17% Similarity=0.198 Sum_probs=163.3
Q ss_pred cchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhh
Q 016879 8 WCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFI 87 (381)
Q Consensus 8 W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~ 87 (381)
..|++ ..++..+.++... +..|++|+|.++||.++|||||||+++|++.+++++++.++++++++++|.++|
T Consensus 65 ~~n~~---~~~~~~~~~~~~~--~~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g--- 136 (312)
T PRK02534 65 DDNLI---YRAAQLLRKRFPF--AEGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELG--- 136 (312)
T ss_pred chhHH---HHHHHHHHHHhCC--CCCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---
Confidence 46777 5555566554321 126899999999999999999999999999999999999999999999998885
Q ss_pred CCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEE-eCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhC
Q 016879 88 GTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVA-HSLAESLKAITAASNYNNRVVECRLTAIVLAIKLG 166 (381)
Q Consensus 88 g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~-~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~ 166 (381)
.|..++++||. .+...+...+++++.|+++.++++ +|+...++.. +.+.+
T Consensus 137 ------~dv~~~~~GG~---~~~~~~g~~~~~~~~~~~~~~vv~~~p~~~~~T~~---------------a~~~~----- 187 (312)
T PRK02534 137 ------SDVPFCIAGGT---QLCFGRGEILEPLPDLDGLGVVLAKYPSLSVSTPW---------------AYKTY----- 187 (312)
T ss_pred ------CCCcEEeECCe---EEEECCCCEeEECCCCCCcEEEEEECCCCCccHHH---------------HHHHH-----
Confidence 37778899984 233334444667777778998887 7887432211 10001
Q ss_pred CCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHH
Q 016879 167 MKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKL 246 (381)
Q Consensus 167 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
+ +.+++. +...+. .
T Consensus 188 -------------~-----------------------~~~~~~-~~~~~~-----------------------------~ 201 (312)
T PRK02534 188 -------------R-----------------------QQFGDT-YLSDEE-----------------------------D 201 (312)
T ss_pred -------------h-----------------------hhcccc-cccCcc-----------------------------c
Confidence 0 011100 000000 0
Q ss_pred HHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHH-hCCCcEEEEcCCCCc
Q 016879 247 HQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWG 325 (381)
Q Consensus 247 ~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~-~~Ga~Gak~sGaG~G 325 (381)
... +....|...+..++.++ |++.+++.| |+.++....-..|++.++++.++ +.|++|+.|||+|
T Consensus 202 ~~~----~~~~~~~~~l~~al~~~-----d~~~~~~~~---~n~l~~~~~~~~~~i~~~~~~l~~~~Ga~~~~lSGsG-- 267 (312)
T PRK02534 202 FEQ----RRQALRSGPLLQAISAK-----DPPPIAQLL---HNDLEKVVLPEYPQVAKLLELLSSLPGCLGTMMSGSG-- 267 (312)
T ss_pred ccc----cccccchhHHHHhhhcc-----CHHHHHHhh---hCchHHHhHhcChHHHHHHHHHHhccCCCeeEEECcC--
Confidence 000 00112233355667664 588888766 55566554336899999999888 8999999999888
Q ss_pred ceEEEEEeC-CcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceee
Q 016879 326 GCVVALVKE-SIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAK 378 (381)
Q Consensus 326 G~vi~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v 378 (381)
+|+++|+++ +.++++.+++++.+... ...++++++.+ |++|
T Consensus 268 ptv~~l~~~~~~a~~~~~~l~~~~~~~------------~~~v~i~~~~n~G~~v 310 (312)
T PRK02534 268 PTCFALFESQEQAEQALEQVREAFADP------------GLDAWVCQFISHGIQL 310 (312)
T ss_pred cceEEEeCCHHHHHHHHHHHHHHhccC------------ceEEEEEEecCCCcee
Confidence 999999976 46778888886655321 23688888766 9876
No 28
>PRK01123 shikimate kinase; Provisional
Probab=99.87 E-value=3.3e-20 Score=177.65 Aligned_cols=99 Identities=18% Similarity=0.203 Sum_probs=81.3
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCC--CCCcchhhhhhhccCCceEEe
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGT--QSGGMDQAISIMAKSGFAELI 110 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~--~~g~~D~~~~~~Gg~~~~~~~ 110 (381)
.|++++++++||.++|||||||+++|++.|++++++.++++++++++|.++|+..+. .++..|+++++|||. ++.
T Consensus 74 ~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~---~~~ 150 (282)
T PRK01123 74 YGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGGV---TVT 150 (282)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCCE---EEE
Confidence 599999999999999999999999999999999999999999999999999985543 466678999999994 444
Q ss_pred ecCCC-eeEEeecCCCcEEEEEeCCcc
Q 016879 111 DFNPI-RTTDVQLPAGGTFVVAHSLAE 136 (381)
Q Consensus 111 ~~~~~-~~~~i~~~~~~~~ll~~s~~~ 136 (381)
+.... .+.+++ .++.+++++|+.+
T Consensus 151 ~~~~~~~~~~~~--~~~~~vv~~p~~~ 175 (282)
T PRK01123 151 DNREMKLLKRDE--VELDVLVLIPPEG 175 (282)
T ss_pred cCCCceEEEEec--CCcEEEEEECCCC
Confidence 43332 223333 3589999999864
No 29
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.87 E-value=4.2e-20 Score=178.45 Aligned_cols=214 Identities=15% Similarity=0.182 Sum_probs=146.9
Q ss_pred CCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEee
Q 016879 32 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 111 (381)
Q Consensus 32 ~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~ 111 (381)
..+++|+|.|+||+++|||||||.++|++.|+++++|.++++++++++|.++| .|..++++|| +.+.+
T Consensus 81 ~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig---------~dv~~~~~GG---~~~~~ 148 (300)
T PRK03188 81 APDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG---------SDVPFALLGG---TALGT 148 (300)
T ss_pred CCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcchhhcCC---eEEEE
Confidence 36899999999999999999999999999999999999999999999999883 4888889998 34555
Q ss_pred cCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhhc
Q 016879 112 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 191 (381)
Q Consensus 112 ~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 191 (381)
.+...+.+++.+.++.++++.|....++.. +.+. ++.
T Consensus 149 ~~g~~~~~~~~~~~~~~~lv~p~~~~sT~~---------------~~~~------------------l~~---------- 185 (300)
T PRK03188 149 GRGEQLAPVLARGTFHWVLAFADGGLSTPA---------------VFRE------------------LDR---------- 185 (300)
T ss_pred ecCCEEEECCCCCCcEEEEEeCCCCCCHHH---------------HHHh------------------chh----------
Confidence 444445555555566666666654211110 0000 000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcCC
Q 016879 192 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 271 (381)
Q Consensus 192 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~~ 271 (381)
..... ... -..++..+..++.++
T Consensus 186 -------------~~~~~-----~~~--------------------------------------~~~~~~~~~~al~~~- 208 (300)
T PRK03188 186 -------------LREAG-----DPP--------------------------------------RLGEPDPLLAALRAG- 208 (300)
T ss_pred -------------hhccc-----ccc--------------------------------------ccccHHHHHHHHHcC-
Confidence 00000 000 001233456677765
Q ss_pred CchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeC-CcHHHHHHHHHHHHHh
Q 016879 272 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFYQ 350 (381)
Q Consensus 272 ~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~-~~~~~~~~~l~~~~~~ 350 (381)
|++.++++|++..+..+- -.+|+++++++.+++.|++|++|||+| +++++|+++ +.++++.+++++.
T Consensus 209 ----d~~~l~~~~~n~le~~~~---~~~p~l~~l~~~~~~~Galga~lSGsG--~tv~~l~~~~~~~~~~~~~l~~~--- 276 (300)
T PRK03188 209 ----DPAQLAPLLGNDLQAAAL---SLRPSLRRTLRAGEEAGALAGIVSGSG--PTCAFLCADADSAVDVAAALSGA--- 276 (300)
T ss_pred ----CHHHHHHHhhCcCHHHHH---HhCchHHHHHHHHHHCCCCEEEEEccc--cceEEEeCCHHHHHHHHHHHHhc---
Confidence 599999998643333221 149999999999999999999999988 789999976 4566777666542
Q ss_pred cccCCCcccCCCCcceEEEeeC-CCceeecc
Q 016879 351 SRIDRGVINNNDLGLYVFASKP-SSGAAKFK 380 (381)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v~~ 380 (381)
+ ....++++++ ..|++|++
T Consensus 277 -g----------~~~~~~~~~~~~~~~~~~~ 296 (300)
T PRK03188 277 -G----------VCRTVRVATGPVPGARVVS 296 (300)
T ss_pred -C----------cceeEEEeeccccceEecc
Confidence 1 1346888665 45999875
No 30
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.86 E-value=8.3e-21 Score=182.14 Aligned_cols=208 Identities=16% Similarity=0.175 Sum_probs=147.6
Q ss_pred ccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhh
Q 016879 7 LWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF 86 (381)
Q Consensus 7 ~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~ 86 (381)
.|.|++ ..++..+.+... ...|++++|.++||.++|||||||.++|++.+++++++.++++++++++|.++|
T Consensus 63 ~~~n~~---~~~~~~~~~~~~---~~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g-- 134 (286)
T PRK00128 63 DERNLA---YKAAKLLKERYN---IKQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIG-- 134 (286)
T ss_pred CCCcHH---HHHHHHHHHhcC---CCCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhC--
Confidence 477877 445555554422 136899999999999999999999999999999999999999999999999885
Q ss_pred hCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhC
Q 016879 87 IGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLG 166 (381)
Q Consensus 87 ~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~ 166 (381)
.|..++++||. .+.+.+.....+++.+++..+++++|+...++... . +.
T Consensus 135 -------~dv~~~~~Gg~---~~~~~~g~~~~~~~~~~~~~~vv~~p~~~~~T~~~---------------~----~~-- 183 (286)
T PRK00128 135 -------SDVPFCIYGGT---ALATGRGEKITPLKSPPSCWVVLAKPDIGVSTKDV---------------Y----KN-- 183 (286)
T ss_pred -------CCCCeEeeCCe---EEEecCCcccccCCCCCCcEEEEEcCCCCCCHHHH---------------H----hc--
Confidence 48888999984 34444444455565555778999999863221100 0 00
Q ss_pred CCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHH
Q 016879 167 MKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKL 246 (381)
Q Consensus 167 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
++ .. ..
T Consensus 184 ------------~~---------------------------~~-----~~------------------------------ 189 (286)
T PRK00128 184 ------------LD---------------------------LD-----KI------------------------------ 189 (286)
T ss_pred ------------Cc---------------------------cc-----cc------------------------------
Confidence 00 00 00
Q ss_pred HHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccC-CChHHHHHHHHHHhCCCcEEEEcCCCCc
Q 016879 247 HQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYEC-SCPELEELVNVCRNNGALGARLTGAGWG 325 (381)
Q Consensus 247 ~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~v-s~peld~l~~~a~~~Ga~Gak~sGaG~G 325 (381)
. ...+..+..++.++ |++.++++|++..+. +++ .+|+++++++.+++.|++|++|||+|
T Consensus 190 ----~-----~~~~~~~~~~l~~~-----d~~~~~~~~~n~l~~----~~~~~~p~l~~l~~~~~~~Ga~g~~lSGsG-- 249 (286)
T PRK00128 190 ----S-----HPDTEKLIEAIEEG-----DYQGICANMGNVLEN----VTLKKYPEIAKIKERMLKFGADGALMSGSG-- 249 (286)
T ss_pred ----c-----CcchHHHHHHHhcC-----CHHHHHHhccCcHHH----HHHhhChHHHHHHHHHHhcCCCeeEEcccC--
Confidence 0 00112344566654 599999988642222 234 38999999999999999999999999
Q ss_pred ceEEEEEeC-CcHHHHHHHHHHH
Q 016879 326 GCVVALVKE-SIDSQFILNLKEQ 347 (381)
Q Consensus 326 G~vi~l~~~-~~~~~~~~~l~~~ 347 (381)
||+++|+++ +.++++.+++++.
T Consensus 250 ~sv~~l~~~~~~~~~i~~~l~~~ 272 (286)
T PRK00128 250 PTVFGLFDDESRAQRIYNGLKGF 272 (286)
T ss_pred ccEEEEeCCHHHHHHHHHHhHhh
Confidence 999999976 4677888888654
No 31
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.84 E-value=8.8e-19 Score=170.62 Aligned_cols=221 Identities=17% Similarity=0.174 Sum_probs=151.9
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEeec
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 112 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~ 112 (381)
.|++++|+++||.++|||||||+++|.+.|++.+++.+++.+++++++.+.| .++.|.+++++||. ++...
T Consensus 81 ~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge------~s~~~va~~~~GG~---vv~~G 151 (324)
T TIGR00144 81 EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGG------TSGIGVASFEDGGF---IVDGG 151 (324)
T ss_pred CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCC------CCccceeeeeeCCE---EEECC
Confidence 5899999999999999999999999999999999999999999999998765 34557778999994 23211
Q ss_pred ------------------CCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhh
Q 016879 113 ------------------NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAIS 174 (381)
Q Consensus 113 ------------------~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~ 174 (381)
.+..+.++++| +|+++++.|..+ .++ + .|. +++|.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~~-~t~-~------are------~~~lp~~---------- 206 (324)
T TIGR00144 152 HSSKEKSDFLPSSASSAKPAPVIARYDFP-DWNIILAIPEID-SVS-G------RRE------VNIFQKY---------- 206 (324)
T ss_pred cccccccccCcccccCCCCCCeEEecCCC-CcEEEEEecCCC-CCC-c------HHH------HHHHHhc----------
Confidence 11235567777 999999999864 211 1 111 1112111
Q ss_pred hcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHH
Q 016879 175 KVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVY 254 (381)
Q Consensus 175 ~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 254 (381)
.+++.++..
T Consensus 207 ----------------------------------~~i~~~dv~------------------------------------- 215 (324)
T TIGR00144 207 ----------------------------------CPVPLRDVE------------------------------------- 215 (324)
T ss_pred ----------------------------------CCCCHHHHH-------------------------------------
Confidence 012212211
Q ss_pred hHHHhH--HHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhh-hc-cCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEE
Q 016879 255 SEAKRV--HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSV-LY-ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVA 330 (381)
Q Consensus 255 ~E~~r~--~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~-~~-~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~ 330 (381)
+..|+ .+++.++.++ |++.|++.|++.+..-.+ .. +.-.|.+..+++.+.+ ++|+-|||+| +++++
T Consensus 216 -~~~~~~l~~l~~al~~~-----d~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~--a~g~~iSGsG--PTv~a 285 (324)
T TIGR00144 216 -RICHLILMKMMPAVVEG-----DLDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS--APGAGMSSFG--PTVYA 285 (324)
T ss_pred -HHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh--ccCceecCCC--CeEEE
Confidence 01122 3457788775 599999999874433211 10 1336777777776654 4899999777 99999
Q ss_pred EEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeec
Q 016879 331 LVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 379 (381)
Q Consensus 331 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 379 (381)
|++++ ++++.+++++.|...+ ..+.++++++++ |++|.
T Consensus 286 l~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~n~Ga~v~ 324 (324)
T TIGR00144 286 VTDEK-PGNIAGAVADIFGPYG----------VYGRIIVTKARNRGAFII 324 (324)
T ss_pred EecCc-hHHHHHHHHHHhhhCC----------CceEEEEEccCCCCCEeC
Confidence 99764 7788888887664433 367899999886 99873
No 32
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.81 E-value=1.4e-18 Score=167.21 Aligned_cols=113 Identities=16% Similarity=0.159 Sum_probs=88.1
Q ss_pred hhhhHHHHHHHHHHHcCCC-CCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhC
Q 016879 10 FVFFRYKAFYEYVKAKGLD-VGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIG 88 (381)
Q Consensus 10 ~yv~~~~g~~~~l~~~~~~-~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g 88 (381)
||+ ..++..+.+.... .....|+++.|+++||.++|||||||.++|++.+++++++.++++++++++|.++|
T Consensus 64 nlv---~~a~~~l~~~~~~~~~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg---- 136 (293)
T TIGR00154 64 NLI---YRAAQLLKNFANSKIKSLDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLG---- 136 (293)
T ss_pred cHH---HHHHHHHHHHhcccccCCCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC----
Confidence 888 5666666654321 00136999999999999999999999999999999999999999999999999883
Q ss_pred CCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcch
Q 016879 89 TQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAES 137 (381)
Q Consensus 89 ~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~ 137 (381)
.|...+++||. .+.........+++.++++.+++++|++..
T Consensus 137 -----~Dv~~~~~gg~---~~~~g~ge~~~~l~~~~~~~~vl~~p~~~~ 177 (293)
T TIGR00154 137 -----ADVPFFVSGHA---AFATGVGEIITPFEDPPEKWVVIAKPHVSI 177 (293)
T ss_pred -----CCcceEEECCe---EEEEecCcEEEECCCCCCcEEEEEcCCCCc
Confidence 58888999984 344444444555655567889999998753
No 33
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.79 E-value=6.1e-18 Score=162.52 Aligned_cols=114 Identities=10% Similarity=0.009 Sum_probs=88.8
Q ss_pred ccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhh
Q 016879 7 LWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF 86 (381)
Q Consensus 7 ~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~ 86 (381)
.+.|.+ ..++..+.+.... ...|+++++.++||+++|||||||.++|++.+++++++.++++++++++|.++|
T Consensus 68 ~~~Nlv---~ka~~~~~~~~g~--~~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig-- 140 (290)
T PRK14608 68 GDDNLV---LRAARALRARVGP--GLPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLG-- 140 (290)
T ss_pred CCCcHH---HHHHHHHHHHhCC--CCCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC--
Confidence 367888 4444555543221 136899999999999999999999999999999999999999999999999883
Q ss_pred hCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcch
Q 016879 87 IGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAES 137 (381)
Q Consensus 87 ~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~ 137 (381)
.|...+++||. .+.......+++++.++++.+++++|+++.
T Consensus 141 -------~dv~~~l~gg~---~~~~g~g~~~~~l~~~~~~~~vv~~p~~~~ 181 (290)
T PRK14608 141 -------ADVPVCLDSRP---LIMRGIGEELTPLPGLPSLPAVLVNPGVPV 181 (290)
T ss_pred -------CCcchhhcCCe---EEEEecCCEeEECCCCCCcEEEEECCCCCc
Confidence 48889999984 344444445556654457889999998854
No 34
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.79 E-value=8.5e-18 Score=161.37 Aligned_cols=194 Identities=15% Similarity=0.174 Sum_probs=131.8
Q ss_pred CCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhh-ccCCceEEe
Q 016879 32 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIM-AKSGFAELI 110 (381)
Q Consensus 32 ~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~-Gg~~~~~~~ 110 (381)
..|++++|.++||+++|||||||.++|++.++++++|.+++.++++++|.++| .|..+++. ||. .+.
T Consensus 81 ~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig---------~Dvp~~l~~gg~---~~~ 148 (287)
T PRK14616 81 SKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLG---------ADVPYFLEMKGL---AYA 148 (287)
T ss_pred CCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceEeccCCc---EEE
Confidence 36899999999999999999999999999999999999999999999999985 36444443 552 233
Q ss_pred ecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhh
Q 016879 111 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 190 (381)
Q Consensus 111 ~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 190 (381)
......++.++.+..+.+++++|++.-+|.. +.+.+.+.
T Consensus 149 ~g~g~~~~~~~~~~~~~~vvv~P~~~vsT~~---------------a~~~l~~~-------------------------- 187 (287)
T PRK14616 149 TGIGDELEDLQLTLPFHIVTVFPEEHISTVW---------------AYKNFYRR-------------------------- 187 (287)
T ss_pred EEcCceeEECCcCCCcEEEEECCCCCcCHHH---------------HHHHhhhh--------------------------
Confidence 3333334445544457899999987432211 11001000
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcC
Q 016879 191 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 270 (381)
Q Consensus 191 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~ 270 (381)
+.. ...++..++.++...
T Consensus 188 --------------------~~~------------------------------------------~~~~~~~l~~~l~~~ 205 (287)
T PRK14616 188 --------------------FER------------------------------------------ERPDLKTLVRRLCLD 205 (287)
T ss_pred --------------------ccc------------------------------------------CCchHHHHHHHHhcC
Confidence 000 000111122333221
Q ss_pred CCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeC-CcHHHHHHHHHHHHH
Q 016879 271 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFY 349 (381)
Q Consensus 271 ~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~-~~~~~~~~~l~~~~~ 349 (381)
++++.++.++|+- +..+.. ..|+++++.+.+++.|++|+.|||+| +|+++|+++ +.++++.+.+++.|.
T Consensus 206 ----~~~~l~~~~~nD~-e~~~~~---l~p~l~~v~~~~~~~Galg~~lSGSG--ptv~al~~~~~~a~~i~~~l~~~~~ 275 (287)
T PRK14616 206 ----GDTSVLPAFENDF-ESAVFD---HYPAVRKVKDDLLEAGSFFASLSGSG--SAVFGLFENEADAEAAAEMMRARYR 275 (287)
T ss_pred ----CHHHHHHHhcCcc-HHHHHH---hChHHHHHHHHHHhCCCCeEEEeccc--ccceEEeCCHHHHHHHHHHhHHhCc
Confidence 2355555555544 344433 28999999999999999999999999 899999987 578899999987775
Q ss_pred h
Q 016879 350 Q 350 (381)
Q Consensus 350 ~ 350 (381)
.
T Consensus 276 ~ 276 (287)
T PRK14616 276 T 276 (287)
T ss_pred c
Confidence 4
No 35
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.78 E-value=1.1e-17 Score=159.97 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=77.6
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEeec
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 112 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~ 112 (381)
.|++++|.++||+++|||||||.++|++.+++++++.+++++++.++|... +.|...+++||. .+...
T Consensus 84 ~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~---------G~Dv~~~l~gg~---~~~~g 151 (280)
T PRK14614 84 VGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKL---------GADVPFFIFKKT---ALAEG 151 (280)
T ss_pred CceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh---------CCCcceeeeCCc---EEEEE
Confidence 589999999999999999999999999999999999999999999999876 348888888874 34444
Q ss_pred CCCeeEEeecCCCcEEEEEeCCcch
Q 016879 113 NPIRTTDVQLPAGGTFVVAHSLAES 137 (381)
Q Consensus 113 ~~~~~~~i~~~~~~~~ll~~s~~~~ 137 (381)
....+++++.++++.+++++|++..
T Consensus 152 ~ge~~~~l~~~~~~~ivl~~p~~~~ 176 (280)
T PRK14614 152 IGDKLTAVEGVPPLWVVLVNPGLHV 176 (280)
T ss_pred cCceeEECCCCCCcEEEEECCCCCC
Confidence 4444556665567889999998854
No 36
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.78 E-value=8.2e-18 Score=159.87 Aligned_cols=113 Identities=15% Similarity=0.090 Sum_probs=89.0
Q ss_pred CccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh
Q 016879 6 HLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 85 (381)
Q Consensus 6 ~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~ 85 (381)
..|.|.+ ..++..+.+... ..|++|++.++||+++|||||||.++|++.+++++++.+++.++++++|.++
T Consensus 61 ~~~~Nlv---~~a~~~~~~~~~----~~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~i-- 131 (269)
T PRK14609 61 DPEDNLV---VKAYNLLKKDFP----LPPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATL-- 131 (269)
T ss_pred CccccHH---HHHHHHHHHHcC----CCCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh--
Confidence 4578888 555566655432 2489999999999999999999999999999999999999999999999988
Q ss_pred hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecC-CCcEEEEEeCCcch
Q 016879 86 FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP-AGGTFVVAHSLAES 137 (381)
Q Consensus 86 ~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~-~~~~~ll~~s~~~~ 137 (381)
++|...+++|+. .+.......+++++.+ +++.+++++|++..
T Consensus 132 -------GaDvpffl~g~~---a~~~G~Ge~l~~l~~~~~~~~~vlv~P~~~~ 174 (269)
T PRK14609 132 -------GADCAFFIRNKP---VYATGIGDIFSPIDLSLSGYYIALVKPDIHV 174 (269)
T ss_pred -------CCCceEEccCCC---EEEEEeCCeeEECCCCCCCCEEEEECCCCCC
Confidence 368888888864 3444445555666543 57889999998843
No 37
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.77 E-value=5.6e-17 Score=154.79 Aligned_cols=112 Identities=12% Similarity=0.087 Sum_probs=87.6
Q ss_pred cchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhh
Q 016879 8 WCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFI 87 (381)
Q Consensus 8 W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~ 87 (381)
|.|++ ..++..+.+... ...|+++++.++||+++|||||||.+||++.+++++++.+++++++.++|.++|
T Consensus 60 ~~n~v---~~a~~~~~~~~g---~~~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~--- 130 (275)
T PRK14611 60 EENIV---YKALRLFERYTG---IDINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSIS--- 130 (275)
T ss_pred cccHH---HHHHHHHHHHhC---CCCCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC---
Confidence 77888 555566665422 136999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcch
Q 016879 88 GTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAES 137 (381)
Q Consensus 88 g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~ 137 (381)
.|...+++||. .+.........+++.+....+++++|+++.
T Consensus 131 ------~D~~~~~~Gg~---~~~~~~g~~~~~~~~~~~~~~vv~~p~~~~ 171 (275)
T PRK14611 131 ------ADAPFFLKGGF---ALGRGIGDKLEFLEKPISREITLVYPNIKS 171 (275)
T ss_pred ------CCCCeeecCCe---EEEeccCceeEECCcCCCcEEEEEeCCCCC
Confidence 37666788873 445544444455554446678999998854
No 38
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.75 E-value=1.2e-16 Score=154.05 Aligned_cols=198 Identities=15% Similarity=0.141 Sum_probs=131.8
Q ss_pred CCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEe
Q 016879 32 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPK-KEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELI 110 (381)
Q Consensus 32 ~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~-~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~ 110 (381)
..|++|+|+++||+++|||||||.+++++.+++..++ ++. +++.++|.+++ .|..+++.|+ ..+.
T Consensus 91 ~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~--l~~~e~L~~lA~~lG---------aDvP~~l~G~---~a~~ 156 (297)
T PRK14613 91 LPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRN--FFTSDEMQVFAKEIG---------SDVPFFLGEG---HAFV 156 (297)
T ss_pred CCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHhC---------CccchhhcCC---eEEE
Confidence 3689999999999999999999999888888877554 454 67777998883 4866766665 4556
Q ss_pred ecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhh
Q 016879 111 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 190 (381)
Q Consensus 111 ~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 190 (381)
+.....++++++|..+. +++.|++..+|.. +.+.+.+..
T Consensus 157 ~g~Ge~~~~l~~~~~~~-vlv~P~~~vsT~~---------------a~~~l~~~~------------------------- 195 (297)
T PRK14613 157 TGKGEIMEEIEVHKGQG-ILALTPQVMNTGE---------------MYALLKKPL------------------------- 195 (297)
T ss_pred ecCCcEEEEcCCCCCeE-EEEECCCCcChHH---------------HHHhcchhh-------------------------
Confidence 66665667777666654 6777887432211 111110000
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcC
Q 016879 191 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 270 (381)
Q Consensus 191 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~ 270 (381)
... .. . . . . +.+...++.++.++
T Consensus 196 ----------------~~~-~~-~-----------~-------------------~-------~--~~~~~~~~~al~~~ 218 (297)
T PRK14613 196 ----------------QES-AS-Q-----------K-------------------N-------G--NTLSEDLISSLKVG 218 (297)
T ss_pred ----------------ccc-cc-c-----------c-------------------c-------c--cccHHHHHHHHHcC
Confidence 000 00 0 0 0 0 01122345566654
Q ss_pred CCchHHHHHHHHH-HHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeC-CcHHHHHHHHHHHH
Q 016879 271 LSEEDKLKKLGDL-MNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQF 348 (381)
Q Consensus 271 ~~~~~d~~~lg~l-m~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~-~~~~~~~~~l~~~~ 348 (381)
|++.+... +|+. +..+.. -.|+++++++.+++.|++|++|||+| +|+++++++ +.++++.+.+++.|
T Consensus 219 -----~~~~l~~~l~ndl-e~~~~~---l~P~~~~i~~~~~~~Ga~~~~mSGSG--ptvf~l~~~~~~a~~~~~~l~~~~ 287 (297)
T PRK14613 219 -----DWVSLQGRLENDF-EPVAFQ---LHPELGVLKDKFLEFGSSYCSLTGSG--SSMYGLVQGLEIQEELLPRLRQEF 287 (297)
T ss_pred -----CHHHHHHHhcccc-hHHHHH---hCcHHHHHHHHHHHcCCCEEEEEccc--cceEEEeCCHHHHHHHHHHHHHhh
Confidence 47777554 4665 444432 28999999999999999999999997 999999987 67889999998777
Q ss_pred Hhcc
Q 016879 349 YQSR 352 (381)
Q Consensus 349 ~~~~ 352 (381)
.+.+
T Consensus 288 ~~~~ 291 (297)
T PRK14613 288 SNLT 291 (297)
T ss_pred ccce
Confidence 5443
No 39
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.74 E-value=1.5e-16 Score=153.38 Aligned_cols=94 Identities=17% Similarity=0.113 Sum_probs=75.2
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEeec
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 112 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~ 112 (381)
.|++++|.+.||.++|||||||.++|++.+++++++.+++.+++++++.++| .|...+++||. .+...
T Consensus 87 ~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~g---------aDvPffl~gg~---a~~~G 154 (296)
T PRK14615 87 PPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVG---------ADVPFFLHNVP---CRATG 154 (296)
T ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC---------CCCeeeccCCC---EEEEe
Confidence 6899999999999999999999999999999999999999999999999985 36555566653 23444
Q ss_pred CCCeeEEeec-CCCcEEEEEeCCcchh
Q 016879 113 NPIRTTDVQL-PAGGTFVVAHSLAESL 138 (381)
Q Consensus 113 ~~~~~~~i~~-~~~~~~ll~~s~~~~~ 138 (381)
....++++++ ++++.+++++|++.-+
T Consensus 155 ~Ge~~~~l~~~~~~~~~vl~~P~~~vs 181 (296)
T PRK14615 155 IGEILTPVALGLSGWTLVLVCPEVQVS 181 (296)
T ss_pred eEeEEEECCCCCCCcEEEEECCCCCcC
Confidence 4445556654 3467899999988543
No 40
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.74 E-value=4.7e-17 Score=155.38 Aligned_cols=89 Identities=17% Similarity=0.220 Sum_probs=69.7
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEeec
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 112 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~ 112 (381)
.|++|+|.++||+++|||||||.++|++.+++++++.+++ +.+++..++ .|...+++||. .+...
T Consensus 82 ~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g---------~dv~~~~~GG~---~~~~g 146 (276)
T PRK14612 82 GGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLG---------ADVPFFLLGGA---AEARG 146 (276)
T ss_pred CCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhC---------CCcCeeeeCCe---EEEEe
Confidence 5899999999999999999999999999999999998775 445555542 48888899984 34444
Q ss_pred CCCeeEEeecCCCcEEEEEeCCcch
Q 016879 113 NPIRTTDVQLPAGGTFVVAHSLAES 137 (381)
Q Consensus 113 ~~~~~~~i~~~~~~~~ll~~s~~~~ 137 (381)
+...+.+++.| .+.+++++|+++.
T Consensus 147 ~g~~~~~l~~~-~~~~vv~~P~~~~ 170 (276)
T PRK14612 147 VGERLTPLELP-PVPLVLVNPGVAV 170 (276)
T ss_pred cCccceEcCCC-CcEEEEECCCCCC
Confidence 44445566544 7889999998854
No 41
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.73 E-value=6.7e-16 Score=143.33 Aligned_cols=227 Identities=18% Similarity=0.230 Sum_probs=162.4
Q ss_pred CCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEee
Q 016879 32 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 111 (381)
Q Consensus 32 ~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~ 111 (381)
..|++|.|.+++|...||||.+.++.|++.++++++|+.++-++|+....+. . .++.-.++.-+||+ .+|
T Consensus 69 ~~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG-----~-tSgiGv~afe~GGF----IVD 138 (312)
T COG1907 69 GEGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRG-----G-TSGIGVYAFEYGGF----IVD 138 (312)
T ss_pred cCceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccC-----C-ccceeEEEEEECCE----EEE
Confidence 3689999999999999999999999999999999999999999999887666 2 33456667777773 344
Q ss_pred cCC--------C--eeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchh
Q 016879 112 FNP--------I--RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSD 181 (381)
Q Consensus 112 ~~~--------~--~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~ 181 (381)
.-. . .+-+..||.+|.|+++.|.+++. . + +++|- .++.+.-+
T Consensus 139 GGh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~rg---~----~--~~~E~----~if~~~~p--------------- 190 (312)
T COG1907 139 GGHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVERG---V----S--GRREV----DIFKKYCP--------------- 190 (312)
T ss_pred CCcccCcccCCCCceeeeecCCCceEEEEEecCCCcc---c----c--chHHH----HHHHhcCC---------------
Confidence 211 1 25577899999999999987531 1 1 11111 11111100
Q ss_pred hhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHH
Q 016879 182 VEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH 261 (381)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~ 261 (381)
...+ ..+++.|.+ +.
T Consensus 191 -----------------------------~p~~-------------------------------~~~~ls~~v-----Lm 205 (312)
T COG1907 191 -----------------------------VPLE-------------------------------EVGELSHRV-----LM 205 (312)
T ss_pred -----------------------------CCHH-------------------------------HHHHHHHHH-----HH
Confidence 0000 122333321 34
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhHHh---hhhc--cCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeCCc
Q 016879 262 AFKDTVSSNLSEEDKLKKLGDLMNDSHHSC---SVLY--ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESI 336 (381)
Q Consensus 262 ~~~~al~~~~~~~~d~~~lg~lm~~sh~~l---r~~~--~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~~ 336 (381)
++..++-. .|++.||+.|++-|... .+.. ++.|+.+..+++.+.++ ++|+.+| .||+++++++++..
T Consensus 206 ~mmPavvE-----~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~-a~~agqS--SwGPtvY~i~d~~~ 277 (312)
T COG1907 206 KMMPAVVE-----RDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEA-AYGAGQS--SWGPTVYGIVDSRE 277 (312)
T ss_pred HHhHHHHh-----hCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHh-ccccccc--ccCCEEEEeccccc
Confidence 56666665 46999999999998887 3332 35689999999999999 8999998 78899999998877
Q ss_pred HHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCC-ceeec
Q 016879 337 DSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSS-GAAKF 379 (381)
Q Consensus 337 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~ 379 (381)
...+...+.+.+.+.++ ...+++++|.+ ||.+.
T Consensus 278 ~~~~~~~~~~~~~~~g~----------~gev~vT~~rN~Ga~i~ 311 (312)
T COG1907 278 AGSVVRKLIDILLEEGI----------GGEVFVTKARNRGAEIL 311 (312)
T ss_pred cchHHHHHHHHHHhcCC----------ceEEEEeccCCCCceec
Confidence 76666666666655443 56899999977 99875
No 42
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.67 E-value=1.6e-15 Score=144.26 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=87.2
Q ss_pred CccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh
Q 016879 6 HLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 85 (381)
Q Consensus 6 ~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~ 85 (381)
..|.||+ ..++..+.+.... ..|++++|.++||+++|||||||.++|++.+++++++.++++++++++|.++|
T Consensus 65 ~~~~N~v---~~a~~~l~~~~~~---~~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~ig- 137 (271)
T PRK00343 65 PEEDNLI---VRAARLLQKATGT---PLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLG- 137 (271)
T ss_pred CCcccHH---HHHHHHHHHHhCC---CCCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-
Confidence 4689999 6666777665332 35999999999999999999999999999999999999999999999998884
Q ss_pred hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcch
Q 016879 86 FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAES 137 (381)
Q Consensus 86 ~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~ 137 (381)
.|..+++.|+ ..+........++++.| ...+++++|+++.
T Consensus 138 --------aDvp~~l~g~---~~~~~g~g~~~~~l~~~-~~~~vl~~p~~~~ 177 (271)
T PRK00343 138 --------ADVPVFVRGH---AAFAEGIGEILTPVDLP-EKWYLVVKPGVHI 177 (271)
T ss_pred --------CCceEEecCC---cEEEEecCCEEEECCCC-CcEEEEEeCCCCc
Confidence 4765565554 23444444455666644 4557888998753
No 43
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.59 E-value=7.5e-14 Score=133.73 Aligned_cols=107 Identities=11% Similarity=0.050 Sum_probs=82.7
Q ss_pred chhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhC
Q 016879 9 CFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIG 88 (381)
Q Consensus 9 ~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g 88 (381)
.|.+ ..++..+.+.... ..|++++|+++||+++|||||||.++|++.+++++++ ++.+++.+++.++
T Consensus 65 ~Nlv---~kA~~~l~~~~~~---~~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~l----- 131 (283)
T PRK14610 65 NNTV---QRAIGLLLRHSPV---RTNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSV----- 131 (283)
T ss_pred CcHH---HHHHHHHHHHhCC---CCCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHh-----
Confidence 5666 3444555444321 3599999999999999999999999999999999996 7999999999987
Q ss_pred CCCCcchhhhhhhccCCceEEeecCCCeeEEeec-CCCcEEEEEeC-Cc
Q 016879 89 TQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQL-PAGGTFVVAHS-LA 135 (381)
Q Consensus 89 ~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~-~~~~~~ll~~s-~~ 135 (381)
|.|...+++||. .+.......+++++. +....++++.| ++
T Consensus 132 ----GaDvPffl~g~~---a~~~G~Ge~l~~l~~~~~~~~~vl~~p~~~ 173 (283)
T PRK14610 132 ----GSDVPACLDSKT---LFVRGIGEDILLLPDLSLPTYVVLVAPKGK 173 (283)
T ss_pred ----CCCCcEEEECCe---EEEEecccEEEECcccCCCCeEEEEECCCC
Confidence 789999999874 467777766777643 22344788877 45
No 44
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.57 E-value=7.1e-13 Score=122.22 Aligned_cols=113 Identities=27% Similarity=0.362 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCC-CCcc
Q 016879 16 KAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQ-SGGM 94 (381)
Q Consensus 16 ~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~-~g~~ 94 (381)
..+++.+.+... .+.++++.++|+||.++||.||||.+.|++.|+.++.|.++++.+++.+..++-.-.|.. +|-.
T Consensus 55 ~~~~~~v~e~~g---~~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA~ 131 (278)
T COG1685 55 ERCVERVREKYG---IPLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSVTGAF 131 (278)
T ss_pred HHHHHHHHHHcC---CCcceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceEeccc
Confidence 456666666543 246999999999999999999999999999999999999999999999998887666654 3444
Q ss_pred -hhhhhhhccCCceEEeecCCCeeEEe-ecCCCcEEEEEeCCc
Q 016879 95 -DQAISIMAKSGFAELIDFNPIRTTDV-QLPAGGTFVVAHSLA 135 (381)
Q Consensus 95 -D~~~~~~Gg~~~~~~~~~~~~~~~~i-~~~~~~~~ll~~s~~ 135 (381)
|..+++||| +.+.|.+.+++-+. +.| ++..+|.-|+.
T Consensus 132 DDa~AS~~GG---~~iTDN~~m~Ilrr~~~~-~~~vlI~~p~~ 170 (278)
T COG1685 132 DDACASYLGG---IVITDNRKMRILRRLDLP-ELTVLILAPGE 170 (278)
T ss_pred hHHHHHHhCC---eEEecchhheehhccccC-CceEEEEecCC
Confidence 667899999 45667666554443 344 67777777765
No 45
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.57 E-value=1.4e-13 Score=131.32 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=77.0
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEeec
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 112 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~ 112 (381)
.|+++++.++||+++|||||||.++|++.+++++++.+++++++.++|.++| .|...++.||. .+...
T Consensus 79 ~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lG---------aDvPffl~~g~---a~~~G 146 (288)
T PRK00650 79 TPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIG---------MDTPFFFSTGS---ALGVG 146 (288)
T ss_pred CCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CcchhhhcCce---EEEEe
Confidence 5899999999999999999999999999999999999999999999999994 48888887763 34444
Q ss_pred CCCeeEEeecCCCcEEEEEeCCcc
Q 016879 113 NPIRTTDVQLPAGGTFVVAHSLAE 136 (381)
Q Consensus 113 ~~~~~~~i~~~~~~~~ll~~s~~~ 136 (381)
....+++++.++++.++++.|++.
T Consensus 147 ~Ge~l~~~~~~~~~~~vlv~P~~~ 170 (288)
T PRK00650 147 RGEKIIALEESVSDRYVLYFSSEG 170 (288)
T ss_pred cCCEEEECcCCCCceEEEEeCCCC
Confidence 555566666555677888888763
No 46
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.54 E-value=2.1e-14 Score=107.59 Aligned_cols=67 Identities=40% Similarity=0.663 Sum_probs=62.2
Q ss_pred EEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhcc
Q 016879 36 DILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAK 103 (381)
Q Consensus 36 ~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg 103 (381)
+++++++||.++|||||||++++++.+++++++.++++++++++++++|+..+.+ +++|+++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~-~g~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKP-SGIDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSS-HSHHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCC-ChhhHHHHHhCc
Confidence 5899999999999999999999999999999999999999999999999866555 778889999997
No 47
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.52 E-value=3.2e-13 Score=127.71 Aligned_cols=105 Identities=19% Similarity=0.269 Sum_probs=86.8
Q ss_pred HHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchh
Q 016879 17 AFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQ 96 (381)
Q Consensus 17 g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~ 96 (381)
-+...|++... ...|++|+|++.||+++|||+.||.+++++.+|+++++.+++.+||.+++.++ |.|.
T Consensus 71 rAa~ll~~~~~---~~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~L---------GaDV 138 (289)
T COG1947 71 RAAELLRKRTG---IAGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRL---------GADV 138 (289)
T ss_pred HHHHHHHHHhC---CCCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh---------CCCc
Confidence 34445555433 24689999999999999999999999999999999999999999999999999 7899
Q ss_pred hhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcc
Q 016879 97 AISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAE 136 (381)
Q Consensus 97 ~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~ 136 (381)
..|++||. -+...+..++++++-++...++++.|++.
T Consensus 139 Pffl~g~t---A~a~G~GE~l~~~~~~~~~~~vl~~P~v~ 175 (289)
T COG1947 139 PFFLSGGT---AFAEGRGEKLEPLEDPPEKWYVLAKPGVG 175 (289)
T ss_pred CeeeeCCc---eEEEEccceeeECCCCCCceEEEEeCCCC
Confidence 99999884 46677777777887445677788888774
No 48
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.51 E-value=8.1e-12 Score=120.59 Aligned_cols=218 Identities=12% Similarity=0.104 Sum_probs=138.2
Q ss_pred HHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcch
Q 016879 16 KAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMD 95 (381)
Q Consensus 16 ~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D 95 (381)
..+++.+++... ...+++|.+.++||.++|||||||..+|++.|++++++++++++++..++.++| |.
T Consensus 70 ~~~l~~~~~~~~---~~~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gs---Gs------ 137 (305)
T TIGR01240 70 SNCLDDFRQLRK---EQEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGS---GS------ 137 (305)
T ss_pred HHHHHHHHHhcC---CCCceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc---CC------
Confidence 567777776543 246899999999999999999999999999999999999999999999999986 11
Q ss_pred hhhhhhccCCceEEee---cCCCeeEEeecCCCc----EEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCC
Q 016879 96 QAISIMAKSGFAELID---FNPIRTTDVQLPAGG----TFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMK 168 (381)
Q Consensus 96 ~~~~~~Gg~~~~~~~~---~~~~~~~~i~~~~~~----~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~ 168 (381)
...+++||. +.+.. ..+...++++.+..| .++++.+..+++-.++ .+++.
T Consensus 138 a~~s~~GG~--v~~~~g~~~~~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt-------------~gm~~-------- 194 (305)
T TIGR01240 138 ACRSLFGGY--VAWEKGKDDHSSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSR-------------QGMQL-------- 194 (305)
T ss_pred eeeeeecCe--EEEEcCCCCCCeeEEECCCccccccceEEEEEcCCCCCCCCCH-------------HHHHH--------
Confidence 122789985 33322 223344555554334 4455555543210011 00000
Q ss_pred chhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHH
Q 016879 169 PQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQ 248 (381)
Q Consensus 169 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (381)
.++..+ ....
T Consensus 195 ------------------------------------~~~ts~----------------------------------~~~~ 204 (305)
T TIGR01240 195 ------------------------------------TVATSE----------------------------------LFKE 204 (305)
T ss_pred ------------------------------------hhhcCc----------------------------------cHHH
Confidence 001000 0112
Q ss_pred HHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHh----hhhc-c--CCChHHHHHHH---HHHhCCCcEEE
Q 016879 249 RAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSC----SVLY-E--CSCPELEELVN---VCRNNGALGAR 318 (381)
Q Consensus 249 r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~l----r~~~-~--vs~peld~l~~---~a~~~Ga~Gak 318 (381)
|+++. ..++.++.++|.++ |++.||++.-.+-..+ .+-+ . .-+|+--++++ ..++.|.-.+-
T Consensus 205 ~v~~~---~~~l~~~~~ai~~~-----D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~~~~ 276 (305)
T TIGR01240 205 WIEHV---VPDFEVXRKAIKTK-----DFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYF 276 (305)
T ss_pred HHHHH---HHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCcEEE
Confidence 22221 12466788889875 5999999885443333 2221 1 11344444444 34456766777
Q ss_pred EcCCCCcceEEEEEeCCcHHHHHHHHHHHH
Q 016879 319 LTGAGWGGCVVALVKESIDSQFILNLKEQF 348 (381)
Q Consensus 319 ~sGaG~GG~vi~l~~~~~~~~~~~~l~~~~ 348 (381)
..-|| +.+..|+++++.+++.+.+++.|
T Consensus 277 T~DAG--pNv~vl~~~~~~~~v~~~~~~~~ 304 (305)
T TIGR01240 277 TMDAG--PNVKVLYLAENLSKLFEFIYKLF 304 (305)
T ss_pred EEcCC--CCEEEEEccccHHHHHHHHHHhc
Confidence 77788 99999999999999999987754
No 49
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.45 E-value=2.3e-13 Score=106.33 Aligned_cols=82 Identities=33% Similarity=0.537 Sum_probs=69.6
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhHH-hhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEe-CCcHHHH
Q 016879 263 FKDTVSSNLSEEDKLKKLGDLMNDSHHS-CSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVK-ESIDSQF 340 (381)
Q Consensus 263 ~~~al~~~~~~~~d~~~lg~lm~~sh~~-lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~-~~~~~~~ 340 (381)
+.++|.++ |++.|+++|+++|.. ......+.+|+++.+++.+++.|++|++|||+|||||+++|++ ++.++++
T Consensus 1 m~~al~~~-----d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v 75 (85)
T PF08544_consen 1 MIKALAEG-----DLELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERV 75 (85)
T ss_dssp HHHHHHTT-----CHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHH
T ss_pred CHHHHHCc-----CHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHH
Confidence 35677775 599999999999884 2113357799999999999999999999999999999999994 4789999
Q ss_pred HHHHHHHHH
Q 016879 341 ILNLKEQFY 349 (381)
Q Consensus 341 ~~~l~~~~~ 349 (381)
.+++++.|.
T Consensus 76 ~~~l~~~~~ 84 (85)
T PF08544_consen 76 AEALREHYK 84 (85)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHhCC
Confidence 999988774
No 50
>PRK05905 hypothetical protein; Provisional
Probab=99.37 E-value=1.2e-11 Score=116.29 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=82.8
Q ss_pred HHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchh
Q 016879 17 AFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQ 96 (381)
Q Consensus 17 g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~ 96 (381)
-++..+.+.... ..|+++++.+.||.++||||+||.+++++.+++++++ ++.+++.+++.++ |.|.
T Consensus 72 ka~~~l~~~~~~---~~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~l---------GADV 137 (258)
T PRK05905 72 KTLEWLRDKYNI---KNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKL---------GSDI 137 (258)
T ss_pred HHHHHHHHHhCC---CCCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHh---------CCCc
Confidence 445555554321 3589999999999999999999999999999999997 6899999999999 7899
Q ss_pred hhhhhc-cCCceEEeecCCCeeEEeecCCCcEEEEEeCCcc
Q 016879 97 AISIMA-KSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAE 136 (381)
Q Consensus 97 ~~~~~G-g~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~ 136 (381)
..+++| +. -+.......+++++.+....+++++|++.
T Consensus 138 PFfl~g~~~---a~~~G~GE~l~pl~~~~~~~~vlv~P~~~ 175 (258)
T PRK05905 138 PFFLSGYKT---AYISDYGSQVEDLIGQFKLTYKVIFMNVN 175 (258)
T ss_pred ceEEeCCcc---EEEEeeCceeEECCCCCCceEEEECCCCC
Confidence 999998 64 35666666777776554556899999874
No 51
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=99.22 E-value=1.4e-09 Score=107.79 Aligned_cols=216 Identities=21% Similarity=0.333 Sum_probs=139.3
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHH----HHHHHhhhhhCCCCCcchhhhhhhccCCceE
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA----QLTCECEQFIGTQSGGMDQAISIMAKSGFAE 108 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~----~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~ 108 (381)
.||+++.+|++|.|+|||.||-++...++|+....|.--..+.+. .-..+.|+++.+..|++||...++-|+.+--
T Consensus 690 ~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK~gr 769 (948)
T KOG4644|consen 690 CGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIKKGR 769 (948)
T ss_pred CceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhhhcc
Confidence 799999999999999999999999999999999888765555544 4455688888888899999998888753211
Q ss_pred -EeecC-CCeeEEeecCC------CcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccch
Q 016879 109 -LIDFN-PIRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLS 180 (381)
Q Consensus 109 -~~~~~-~~~~~~i~~~~------~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~ 180 (381)
+.... .++.+++.+|. +-.+++++++.. +.|..+|+
T Consensus 770 ~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKT------------------RLAkNLLQ------------------ 813 (948)
T KOG4644|consen 770 CRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKT------------------RLAKNLLQ------------------ 813 (948)
T ss_pred chhhccCCceeeeecCCHHHHHHHhhcEEEEEeCch------------------HHHHHHHH------------------
Confidence 11111 14566777774 345677777641 11222221
Q ss_pred hhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhH
Q 016879 181 DVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV 260 (381)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~ 260 (381)
+.+|+|+..- .+ ..+.++. +. ..+
T Consensus 814 -------------------dViRn~far~----~a------------------------------~~Q~ah~-l~--~~t 837 (948)
T KOG4644|consen 814 -------------------DVIRNFFARC----KA------------------------------TKQKAHK-LA--EAT 837 (948)
T ss_pred -------------------HHHHHHHHhh----HH------------------------------HHHHHHH-HH--HHH
Confidence 1222332110 00 0111111 11 235
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhh-ccCCChHHHHHHHHHHh--CCCcEEEEcCCCCcceEEEEEeCCcH
Q 016879 261 HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRN--NGALGARLTGAGWGGCVVALVKESID 337 (381)
Q Consensus 261 ~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~-~~vs~peld~l~~~a~~--~Ga~Gak~sGaG~GG~vi~l~~~~~~ 337 (381)
.++++.+++|. ++.+|+++..-|+..+-- -|+-.+.+.+|.++... .| -.+...|||+||+++.+.++...
T Consensus 838 decAegf~kGs-----l~LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hg-esgw~AGAGGGGFiYLl~kEpqq 911 (948)
T KOG4644|consen 838 DECAEGFEKGS-----LELLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHG-ESGWAAGAGGGGFIYLLIKEPQQ 911 (948)
T ss_pred HHHHHHHhcCc-----HHHHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhcccccc-ccchhccCCCCcEEEEEecCCCC
Confidence 56778888875 999999998777653211 15777788888885532 33 23458899999999999988766
Q ss_pred HHHHHHHHH
Q 016879 338 SQFILNLKE 346 (381)
Q Consensus 338 ~~~~~~l~~ 346 (381)
.+-++++-.
T Consensus 912 keaiEa~La 920 (948)
T KOG4644|consen 912 KEAIEAFLA 920 (948)
T ss_pred HHHHHHhhc
Confidence 666655433
No 52
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=99.06 E-value=1.4e-09 Score=99.80 Aligned_cols=228 Identities=21% Similarity=0.276 Sum_probs=150.7
Q ss_pred CCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh--------hhCCCCC-----------
Q 016879 32 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ--------FIGTQSG----------- 92 (381)
Q Consensus 32 ~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~--------~~g~~~g----------- 92 (381)
+.+-++++.+-||.|+|+|||++..++.+...++..++.+++-.+..++.-+|+ .+|..+|
T Consensus 92 p~~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~ 171 (355)
T KOG1537|consen 92 PITTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEA 171 (355)
T ss_pred ccceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhh
Confidence 456789999999999999999999999999888888888887766666555552 1122111
Q ss_pred -----cchhh-hhhhccCCceEEeecCCCee-EEeecC--CCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHH
Q 016879 93 -----GMDQA-ISIMAKSGFAELIDFNPIRT-TDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 163 (381)
Q Consensus 93 -----~~D~~-~~~~Gg~~~~~~~~~~~~~~-~~i~~~--~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~ 163 (381)
-.|.. -...||+ ++.....|... +++.+| ++++|+++.|.+...+..
T Consensus 172 ~~~~~~ad~ilp~~~gg~--~li~~lpP~dlg~~~r~pw~~~lk~i~viP~Fel~T~k---------------------- 227 (355)
T KOG1537|consen 172 KVSGYHADNILPAIMGGF--VLIRNLPPLDLGKPLRFPWDKDLKFILVIPDFELPTKK---------------------- 227 (355)
T ss_pred hhcCCCHHHhcccccCCe--eeecCCCcccccccccCCCCccceEEEEeccccccchh----------------------
Confidence 13443 3567774 33334445443 455555 478899988887432211
Q ss_pred HhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhh
Q 016879 164 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 243 (381)
Q Consensus 164 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
. |..++.. |.
T Consensus 228 ---------------~-----------------------R~vLPt~-yp------------------------------- 237 (355)
T KOG1537|consen 228 ---------------M-----------------------RAVLPTE-YP------------------------------- 237 (355)
T ss_pred ---------------h-----------------------hhhcCcc-cc-------------------------------
Confidence 0 1111111 11
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHH-HHhHHhhhhccCCChHHHHHHHHHHhC---CCcEEEE
Q 016879 244 YKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMN-DSHHSCSVLYECSCPELEELVNVCRNN---GALGARL 319 (381)
Q Consensus 244 ~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~-~sh~~lr~~~~vs~peld~l~~~a~~~---Ga~Gak~ 319 (381)
+..|+ ....|+-....|+-.+. .+......+|. ..|+.+|.-. .|-++.+...+... |.+|..+
T Consensus 238 -----~~d~V-~NlqrlA~LttAl~~~p---~n~~L~y~~m~DkvhqPyRa~L---IPGl~~il~~~~p~t~pGl~Gicl 305 (355)
T KOG1537|consen 238 -----MVDHV-WNLQRLAALTTALLEGP---DNVMLGYALMSDKVHQPYRAPL---IPGLEAILKAALPATYPGLFGICL 305 (355)
T ss_pred -----ceeee-ecHHHHHHHHHHHhcCC---CchhhhhhhhhccccCcccccc---CccHHHHHHhhCcccCCceeeEEe
Confidence 11121 12234444555665541 14556667774 5899998754 89999999988874 9999999
Q ss_pred cCCCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeC-CCceee
Q 016879 320 TGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKP-SSGAAK 378 (381)
Q Consensus 320 sGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v 378 (381)
|||| ++++++.. ++-+++-+++-+.|.+.+. .+.+...+| -+|+.|
T Consensus 306 SGAG--PT~lAlat-enf~eI~~~mv~~F~K~G~----------kcs~~~l~pa~Dga~v 352 (355)
T KOG1537|consen 306 SGAG--PTALALAT-ENFQEIGEKMVEAFWKVGH----------KCSVASLKPALDGAGV 352 (355)
T ss_pred cCCC--CeeEEEec-CcHHHHHHHHHHHHHhhCc----------eeeeEeeccccCCcce
Confidence 9999 99999995 6788888999999987754 677777775 335543
No 53
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.05 E-value=9e-10 Score=103.97 Aligned_cols=92 Identities=16% Similarity=0.166 Sum_probs=78.1
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhc-cCCceEEee
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMA-KSGFAELID 111 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~G-g~~~~~~~~ 111 (381)
.|++++++++||+++|||||||.++|++.+++++++.+++++++.++|.++ +.|...+++| + .-+..
T Consensus 85 ~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~l---------GaDvPffl~~~~---~a~~~ 152 (257)
T PRK04181 85 KKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKV---------GADVAFFISGYK---SANVS 152 (257)
T ss_pred CceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh---------CCCccEEecCCc---eEEEE
Confidence 589999999999999999999999999999999999999999999999999 7899999998 5 33566
Q ss_pred cCCCeeEEeecCCCcEEEEEeCCcch
Q 016879 112 FNPIRTTDVQLPAGGTFVVAHSLAES 137 (381)
Q Consensus 112 ~~~~~~~~i~~~~~~~~ll~~s~~~~ 137 (381)
.....+++++.+.. .+++++|++.-
T Consensus 153 G~Ge~l~~l~~~~~-~~~lv~P~~~v 177 (257)
T PRK04181 153 GIGEIVEEFEEEIL-NLEIFTPNIFC 177 (257)
T ss_pred eeCCeeEECCCCCC-eEEEECCCCCc
Confidence 66666777753223 38899998754
No 54
>PLN02407 diphosphomevalonate decarboxylase
Probab=98.94 E-value=1.1e-07 Score=92.16 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=52.9
Q ss_pred EEEEEc--CCCCCCCCChhHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHhhhhhCCCCCcchhhhhhhccC
Q 016879 36 DILVDG--TVPTGSGLSSSTAFVCSSTVALMAAFGVEVP-KKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 104 (381)
Q Consensus 36 ~i~i~s--~IP~g~GLGSSaA~~va~~~al~~~~g~~ls-~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~ 104 (381)
+++|.| ++|.++|||||||..+|++.|+..+++++++ +.++..+|.++ ||.|.- ++|||+
T Consensus 105 ~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr~G--------SGSa~r-S~~Gg~ 167 (343)
T PLN02407 105 HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIARQG--------SGSACR-SLYGGF 167 (343)
T ss_pred cEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHhcc--------ChHHHH-HhhCCe
Confidence 567766 9999999999999999999999999999999 99999999843 566777 899994
No 55
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=98.89 E-value=9.8e-07 Score=85.06 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcch
Q 016879 16 KAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMD 95 (381)
Q Consensus 16 ~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D 95 (381)
+.+++.+++... ....+++...++.|.++||+||||..+|+++|++.++++.++..++-++|..+- +..
T Consensus 75 ~~~ld~~R~~~~---~~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~gS----GSa---- 143 (329)
T COG3407 75 RRVLDRFRKEYG---ISFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLGS----GSA---- 143 (329)
T ss_pred HHHHHHHHHhhc---ccceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHhc----cch----
Confidence 778899986432 245788999999999999999999999999999999999999999999998772 111
Q ss_pred hhhhhhccC
Q 016879 96 QAISIMAKS 104 (381)
Q Consensus 96 ~~~~~~Gg~ 104 (381)
.-+++||+
T Consensus 144 -~RS~~Gg~ 151 (329)
T COG3407 144 -SRSIFGGF 151 (329)
T ss_pred -hhhhcCCe
Confidence 13688885
No 56
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.80 E-value=9e-07 Score=81.38 Aligned_cols=53 Identities=34% Similarity=0.554 Sum_probs=51.4
Q ss_pred CCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 016879 32 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 84 (381)
Q Consensus 32 ~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E 84 (381)
..|.++.+.|+||.|.||+||+|..||++.|+..++|..++..+|+++|..+|
T Consensus 81 ~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iE 133 (293)
T COG4542 81 NTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIE 133 (293)
T ss_pred cCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcC
Confidence 46899999999999999999999999999999999999999999999999998
No 57
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=98.76 E-value=4.9e-07 Score=83.94 Aligned_cols=86 Identities=21% Similarity=0.237 Sum_probs=61.1
Q ss_pred CCCCChhHHHHHHHH-HHHHHH-hCCCCCH-HHHHHHHHHhhhh-hCCCCCcchhhhhhhccCCceEEeecCCCeeEEe-
Q 016879 46 GSGLSSSTAFVCSST-VALMAA-FGVEVPK-KEIAQLTCECEQF-IGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDV- 120 (381)
Q Consensus 46 g~GLGSSaA~~va~~-~al~~~-~g~~ls~-~el~~la~~~E~~-~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i- 120 (381)
..||||||+++++++ .+++.+ .+.+++. .++-++|+.+-.. .|..+++.|..+++||+ ++|-+|.|.....+
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGfDiaaA~fGs---iiyrRF~p~li~~l~ 183 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGFDIAAAIFGS---IIYRRFEPGLIPKLR 183 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccchhhHhhhcc---eEEeecCcchhhhhH
Confidence 689999999999998 333333 5556665 8899999999864 58888999999999998 56766776433222
Q ss_pred -----ecCCCcEEEEEeCCc
Q 016879 121 -----QLPAGGTFVVAHSLA 135 (381)
Q Consensus 121 -----~~~~~~~~ll~~s~~ 135 (381)
.+. ++++++.+...
T Consensus 184 qig~~nfg-~y~LmmGd~a~ 202 (337)
T COG3890 184 QIGAVNFG-DYYLMMGDQAI 202 (337)
T ss_pred hhCccccc-Ceeeeeccccc
Confidence 222 45666655443
No 58
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=98.59 E-value=2e-05 Score=74.62 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=51.8
Q ss_pred CeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccC
Q 016879 34 GLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKS 104 (381)
Q Consensus 34 g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~ 104 (381)
.++|.-.++.|..+||.||||=-+|++.||.++++++.+++++-.+|.++- |. ..-++|||+
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GS---GS------ACRSl~GG~ 166 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGS---GS------ACRSLYGGF 166 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccC---ch------hhhhhhcce
Confidence 455666789999999999999999999999999999999999999998872 11 113689994
No 59
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=98.54 E-value=1.2e-06 Score=83.19 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=50.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHhCC----------CCC--H-HHHHHHHHHhhh-hhCCCCCcchhhhhhhccCCceEEee
Q 016879 46 GSGLSSSTAFVCSSTVALMAAFGV----------EVP--K-KEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 111 (381)
Q Consensus 46 g~GLGSSaA~~va~~~al~~~~g~----------~ls--~-~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~ 111 (381)
..|||||||++.+++.+++..++. +++ . +-+-++|+.+.. -.|.-+++.|..++.||. ..|..
T Consensus 152 KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS---~rYrR 228 (459)
T KOG4519|consen 152 KTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS---QRYRR 228 (459)
T ss_pred ccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccc---eeeee
Confidence 689999999999999888877753 122 2 335566766654 347778899999999997 45666
Q ss_pred cCCCee
Q 016879 112 FNPIRT 117 (381)
Q Consensus 112 ~~~~~~ 117 (381)
|.|..+
T Consensus 229 F~P~li 234 (459)
T KOG4519|consen 229 FSPELI 234 (459)
T ss_pred CCHHHH
Confidence 666433
No 60
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=98.48 E-value=1.9e-05 Score=73.85 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=74.1
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEeec
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 112 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~ 112 (381)
.++.+.+.+++|.|+|+|-|+|.+.+.+.|++..++++ .++.+++||.+|...+ +|.-|..+..+||. ++.+.-
T Consensus 73 ~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~g--tGLGDVvAq~~GGl--ViR~~p 146 (283)
T COG1829 73 DGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENG--TGLGDVVAQYTGGL--VIRVKP 146 (283)
T ss_pred cCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcC--CCchHHHHHhcCcE--EEEecC
Confidence 35789999999999999999999999999999998765 7889999999986543 35669999999983 444432
Q ss_pred C-C--CeeEEeecCCCcEEEEEeCC
Q 016879 113 N-P--IRTTDVQLPAGGTFVVAHSL 134 (381)
Q Consensus 113 ~-~--~~~~~i~~~~~~~~ll~~s~ 134 (381)
- | -.++.++.|. ++++.+..+
T Consensus 147 G~Pg~~~vd~Ip~~~-~~V~~~~~g 170 (283)
T COG1829 147 GGPGEGEVDRIPVPG-LRVITISLG 170 (283)
T ss_pred CCCCeEEEEEeecCC-ceEEEEEcc
Confidence 2 2 3667787775 777666554
No 61
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=74.16 E-value=7.2 Score=28.55 Aligned_cols=49 Identities=24% Similarity=0.205 Sum_probs=41.9
Q ss_pred cCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeCCcHHHHHHHHHH
Q 016879 296 ECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKE 346 (381)
Q Consensus 296 ~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~~ 346 (381)
.++...+..|.+++.+.|.--.++|... +..+.-+++++++.+.+.|++
T Consensus 20 ~i~~~~l~~la~ia~~yg~~~irlT~~Q--~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 20 RISAEQLRALAEIAEKYGDGEIRLTTRQ--NLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp EEEHHHHHHHHHHHHHHSTSEEEEETTS--CEEEEEEEGGGHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHhCCCeEEECCCC--eEEEeCCCHHHHHHHHHHHHc
Confidence 3677889999999999997779999766 788888999999999999865
No 62
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=43.09 E-value=33 Score=33.37 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeCCcHHHHHHHHH
Q 016879 297 CSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 345 (381)
Q Consensus 297 vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~ 345 (381)
+|++.|-.++++|.+.|.=..++|+-+ |.-+-..+.++++++.++|+
T Consensus 42 l~~e~Lr~i~diAekyG~G~i~iT~rq--g~ei~~i~~e~~~~v~~~L~ 88 (317)
T COG2221 42 LSAETLRKIADIAEKYGDGLIHITSRQ--GLEIPGISPEDADDVVEELR 88 (317)
T ss_pred cCHHHHHHHHHHHHHhCCCeEEEEecC--ceEeccCCHHHHHHHHHHHH
Confidence 345555555566666554445666544 55555454555555555554
No 63
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=35.31 E-value=1e+02 Score=29.25 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhHHhhhh--ccCCChHHHHHHHHH-HhCCCcEEEEcCCCCcce
Q 016879 277 LKKLGDLMNDSHHSCSVL--YECSCPELEELVNVC-RNNGALGARLTGAGWGGC 327 (381)
Q Consensus 277 ~~~lg~lm~~sh~~lr~~--~~vs~peld~l~~~a-~~~Ga~Gak~sGaG~GG~ 327 (381)
+...|++.....+.+.+. -|+|+.|||.+++.- ++.|++.+.+..-|+.+.
T Consensus 14 ~r~Ag~i~a~~l~~~~~~v~pGvtt~Eld~~~~~~i~~~ga~pa~~gy~g~~~~ 67 (255)
T COG0024 14 MREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGYKGFPFP 67 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCceehhccCcCCCcc
Confidence 445555555555444332 289999999999966 558999999987775433
No 64
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=26.48 E-value=1.2e+02 Score=24.74 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCC----cceEEEEE-eCCcHHHHHHHHHHHHHhc
Q 016879 300 PELEELVNVCRNNGALGARLTGAGW----GGCVVALV-KESIDSQFILNLKEQFYQS 351 (381)
Q Consensus 300 peld~l~~~a~~~Ga~Gak~sGaG~----GG~vi~l~-~~~~~~~~~~~l~~~~~~~ 351 (381)
..-+.+.+...+.|....|++..|+ |-+++.+. ++++++++++.+++...+.
T Consensus 11 ~Da~~l~~~L~~~g~~~TkLsstGGFLr~GNtTlliGvede~v~~vl~iIk~~c~~R 67 (109)
T PF06153_consen 11 EDADDLSDALNENGFRVTKLSSTGGFLREGNTTLLIGVEDEKVDEVLEIIKENCKKR 67 (109)
T ss_dssp HHHHHHHHHHHHTT--EEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHH--E
T ss_pred hhHHHHHHHHHHCCceEEEEecccceeccCCEEEEEEecHHHHHHHHHHHHHhhcCc
Confidence 3456777888889988899988774 55555554 5689999999999987644
No 65
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=26.23 E-value=57 Score=30.82 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEe
Q 016879 299 CPELEELVNVCRNNGALGARLTGAGWGGCVVALVK 333 (381)
Q Consensus 299 ~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~ 333 (381)
+|++.++.+ ..+.|||+| .|++++-+
T Consensus 230 ~P~i~~~~~-------~~~~mSGSG--stvF~l~~ 255 (257)
T PRK04181 230 YPALKDYLG-------EDWFFSGSG--SSFFRVKR 255 (257)
T ss_pred CHHHHHHhc-------CCcEEeCcC--cceEEEee
Confidence 787777743 466899999 99999754
No 66
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=25.59 E-value=2.7e+02 Score=24.91 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=40.2
Q ss_pred hHHHHHH-HHHHHcCCCCCCCCCeEEEEE--cCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh
Q 016879 13 FRYKAFY-EYVKAKGLDVGPPVGLDILVD--GTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 85 (381)
Q Consensus 13 ~~~~g~~-~~l~~~~~~~~~~~g~~i~i~--s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~ 85 (381)
.|+-|++ .....+|+ .++.+..+ ..+|. .-.+.+++.++++++|.+++.++|.+-|.++|.
T Consensus 96 ~G~~glLl~~a~~~gi-----~ai~L~~e~p~y~pD-------P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ie~ 159 (188)
T TIGR00162 96 IGASGLLLGVSELEGI-----PGACLMGETPGYMID-------PKAAKAVLEVLCKMLSLEVSVEALEERAKEMEK 159 (188)
T ss_pred ccHHHHHHHHHHHCCC-----CeEEEEEeCCCCCCC-------hHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 3445544 34455565 34444443 33443 445667778899999999999999998888874
No 67
>PF08060 NOSIC: NOSIC (NUC001) domain; InterPro: IPR012976 This is the central domain in Nop56/SIK1-like proteins [].; PDB: 3PLA_K 3ICX_B 3ID6_A 3ID5_E 3NVM_A 3NMU_B 2NNW_C 3NVI_A 3NVK_A 2OZB_E ....
Probab=24.80 E-value=1.3e+02 Score=20.94 Aligned_cols=32 Identities=31% Similarity=0.369 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhHHhhhhccCCChHHHHHHHH
Q 016879 277 LKKLGDLMNDSHHSCSVLYECSCPELEELVNV 308 (381)
Q Consensus 277 ~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~ 308 (381)
.+.+-+-++.-|.-+|+.|+.--|||+.++.-
T Consensus 9 ~~~id~ei~~~~~~lre~Y~~~FPEL~~lv~~ 40 (53)
T PF08060_consen 9 LDDIDKEINLLHMRLREWYSWHFPELESLVPN 40 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSTTHHHHS-S
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhHHHHcCC
Confidence 55677778888889999999999999998753
Done!