Query 016879
Match_columns 381
No_of_seqs 147 out of 1449
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 05:18:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016879.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016879hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 1.7E-62 5.7E-67 500.8 33.3 372 3-380 112-519 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 7.4E-54 2.5E-58 436.8 36.3 353 3-380 122-476 (478)
3 1pie_A Galactokinase; galactos 100.0 5.7E-45 2E-49 365.6 36.8 297 6-380 118-417 (419)
4 1wuu_A Galactokinase; galactos 100.0 1.3E-43 4.5E-48 353.5 31.2 287 5-381 110-399 (399)
5 2cz9_A Probable galactokinase; 100.0 3.1E-42 1.1E-46 336.9 33.4 286 5-378 64-350 (350)
6 3k85_A D-glycero-D-manno-hepto 100.0 1.5E-38 5.1E-43 312.7 16.9 240 5-346 74-321 (357)
7 1kvk_A MK, mevalonate kinase; 100.0 7.9E-35 2.7E-39 289.7 30.0 263 6-380 98-381 (395)
8 3k17_A LIN0012 protein; protei 100.0 6.7E-34 2.3E-38 280.2 28.1 235 4-346 71-341 (365)
9 3gon_A Phosphomevalonate kinas 100.0 3.8E-33 1.3E-37 270.2 27.0 231 7-346 61-318 (335)
10 2pg9_A Phosphomevalonate kinas 100.0 2.8E-33 9.6E-38 273.0 25.1 233 4-346 61-320 (337)
11 4hac_A Mevalonate kinase; GHMP 100.0 1E-30 3.5E-35 253.3 27.9 225 32-378 95-320 (321)
12 2x7i_A Mevalonate kinase; tran 100.0 5.9E-31 2E-35 252.8 25.3 229 6-348 67-297 (308)
13 2hfs_A Mevalonate kinase, puta 100.0 1.5E-29 5.1E-34 245.6 30.3 233 33-378 96-332 (332)
14 1h72_C HK, homoserine kinase; 100.0 7.5E-29 2.6E-33 236.7 24.4 240 6-379 54-296 (296)
15 1kkh_A Mevalonate kinase; mixe 100.0 4E-28 1.4E-32 234.0 26.8 203 32-346 97-305 (317)
16 2oi2_A Mevalonate kinase; enzy 100.0 2.9E-28 9.8E-33 232.0 24.9 211 32-349 72-284 (292)
17 3hul_A HSK, HK, homoserine kin 99.9 4.3E-23 1.5E-27 197.7 22.7 217 32-380 69-290 (298)
18 3pyf_A 4-diphosphocytidyl-2-C- 99.9 1.3E-22 4.3E-27 195.2 23.8 232 8-380 68-301 (306)
19 2gs8_A Mevalonate pyrophosphat 99.9 1.4E-22 4.8E-27 195.5 23.1 233 7-378 73-317 (317)
20 3qt5_A Mevalonate diphosphate 99.9 1.8E-21 6.3E-26 189.1 24.1 242 7-380 73-332 (332)
21 2v8p_A 4-diphosphocytidyl-2-C- 99.8 1.8E-20 6E-25 177.0 15.8 111 7-136 60-171 (271)
22 1uek_A 4-(cytidine 5'-diphosph 99.8 1.9E-20 6.3E-25 177.1 14.6 106 9-136 57-162 (275)
23 1fi4_A Mevalonate 5-diphosphat 99.8 5.9E-17 2E-21 161.9 24.8 204 33-349 122-348 (416)
24 2ww4_A 4-diphosphocytidyl-2C-m 99.7 3.3E-18 1.1E-22 162.5 11.1 109 9-137 64-179 (283)
25 3lto_A Mevalonate diphosphate 99.7 1.3E-15 4.5E-20 146.7 23.6 202 32-349 90-309 (323)
26 2hke_A Diphosphomevalonate dec 99.7 4.3E-15 1.5E-19 146.7 27.1 218 16-349 79-319 (380)
27 3f0n_A Mevalonate pyrophosphat 99.6 4.7E-14 1.6E-18 139.0 22.6 205 33-350 122-346 (414)
28 3m05_A Uncharacterized protein 62.1 18 0.0006 28.7 6.1 53 299-351 15-72 (114)
29 2eg2_A Nitrogen regulatory pro 59.4 25 0.00086 27.3 6.7 54 298-351 9-84 (112)
30 1vfj_A Nitrogen regulatory pro 56.1 24 0.00082 27.6 6.0 54 298-351 9-84 (116)
31 2j9c_A GLNK1, hypothetical nit 54.7 21 0.00073 28.2 5.5 54 298-351 11-86 (119)
32 3bzq_A Nitrogen regulatory pro 53.7 38 0.0013 26.3 6.9 55 298-352 11-87 (114)
33 2gw8_A PII signal transduction 49.1 41 0.0014 26.2 6.4 54 298-351 11-86 (114)
34 2ns1_B Nitrogen regulatory pro 49.0 58 0.002 25.4 7.3 55 298-352 13-89 (116)
35 1hwu_A PII protein; herbaspiri 46.1 47 0.0016 25.6 6.3 55 298-352 9-85 (112)
36 2o66_A PII protein; regulation 45.3 51 0.0017 26.7 6.5 55 298-352 21-98 (135)
37 3t9z_A GLNK3, nitrogen regulat 42.4 48 0.0016 26.2 5.8 54 298-351 9-84 (118)
38 3ncq_A Nitrogen regulatory pro 41.0 49 0.0017 26.2 5.6 54 298-351 9-84 (119)
39 4aff_A Nitrogen regulatory pro 35.4 1.3E+02 0.0043 23.5 7.2 69 299-376 10-100 (116)
40 2cz4_A Hypothetical protein TT 31.5 57 0.002 25.8 4.5 53 298-350 33-99 (119)
41 3mhy_A PII-like protein PZ; PI 22.9 1.4E+02 0.0049 23.0 5.4 54 298-351 9-84 (112)
42 1o51_A Hypothetical protein TM 21.9 83 0.0028 24.7 3.8 50 299-348 29-98 (114)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=1.7e-62 Score=500.84 Aligned_cols=372 Identities=31% Similarity=0.522 Sum_probs=308.9
Q ss_pred CCCCccchhh-hHHHHHHHHHHHcCC---CCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHh---CCCCCHHH
Q 016879 3 PLFHLWCFVF-FRYKAFYEYVKAKGL---DVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAF---GVEVPKKE 75 (381)
Q Consensus 3 ~~~~~W~~yv-~~~~g~~~~l~~~~~---~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~---g~~ls~~e 75 (381)
++++.|.+|+ ++++++++++++.+. ...+..||++.|.|+||.|+|| |||++||++.|++.++ +.++++.+
T Consensus 112 ~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~ 189 (520)
T 3v2u_C 112 PSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKD 189 (520)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHH
Confidence 4567899999 778888888876421 0012479999999999999999 9999999999999998 77899999
Q ss_pred HHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEeecCC-CeeEEeecCC----CcEEEEEeCCcchhhhhhcccchhhH
Q 016879 76 IAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNP-IRTTDVQLPA----GGTFVVAHSLAESLKAITAASNYNNR 150 (381)
Q Consensus 76 l~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~-~~~~~i~~~~----~~~~ll~~s~~~~~~~~~~~~~y~~r 150 (381)
++++|+++|+++|.+||+|||+++++|+.|+++++||++ +.++++|+|+ ++.|+|+||++.++++.+++++||.|
T Consensus 190 la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~l~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~R 269 (520)
T 3v2u_C 190 LTRITAVAEHYVGVNNGGMDQATSVYGEEDHALYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLR 269 (520)
T ss_dssp HHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBEEEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHhCCCCchhhHHHHHhCCCCeEEEEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHH
Confidence 999999999999999999999999999999999999999 9999999987 89999999999888999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCch----hhhhhcccchhhhhhhhh--------hhcC-----CCCCChhHHHHHhhhc--CCC
Q 016879 151 VVECRLTAIVLAIKLGMKPQ----EAISKVKTLSDVEGLCVA--------FACK-----NGSSDPVFAVKEFLRK--EPY 211 (381)
Q Consensus 151 ~~e~~~a~~~l~~~~~~~~~----~~~~~~~~L~~~~~~~~~--------~~~~-----~~~~~~~~~v~~~~~~--~~~ 211 (381)
++||+.|+++|++++|+... +......+||++...++. |.++ .+..+|.+.+.+.+.+ .+|
T Consensus 270 r~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~y 349 (520)
T 3v2u_C 270 VIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGF 349 (520)
T ss_dssp HHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCB
T ss_pred HHHHHHHHHHHHHhhCCcccccccccccccccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999887521 111123478887643321 1110 0112344555566654 379
Q ss_pred CHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcCC--CchHHHHHHHHHHHHHhH
Q 016879 212 TALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHH 289 (381)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~~--~~~~d~~~lg~lm~~sh~ 289 (381)
|.+++...++.+.+++.++++...++ +.++|++++|++|+++|+.||.+++++|++++ ++++|++.||++|+++|.
T Consensus 350 t~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~ 427 (520)
T 3v2u_C 350 TVHEASTALNCSREEFTRDYLTTFPV--RFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQA 427 (520)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTSSSCE--EESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhhcCChhhhhhhhcccccc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHH
Confidence 99999998886556665555655554 33456789999999999999999999999863 233579999999999999
Q ss_pred HhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEE---eCCcHHHHHHHHHHHHHhcccCCCcccCCCCcce
Q 016879 290 SCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV---KESIDSQFILNLKEQFYQSRIDRGVINNNDLGLY 366 (381)
Q Consensus 290 ~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 366 (381)
+||++|+||||++|.|+++|++.|++|+||||||||||+++|+ +++.+++++++|++.|+++++ |.++++++.+.
T Consensus 428 slr~~~~vS~peld~lv~~a~~~Ga~GarlTGaG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~--~~~~~~~~~~~ 505 (520)
T 3v2u_C 428 SCDKLYECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRY--PDLTDEELKDA 505 (520)
T ss_dssp HHHHTSCCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHC--TTCCHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHhCCCCEEEEecCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CccccccCCCe
Confidence 9999999999999999999999999999999999999999999 778999999999999998876 44455556789
Q ss_pred EEEeeCCCceeecc
Q 016879 367 VFASKPSSGAAKFK 380 (381)
Q Consensus 367 ~~~~~p~~Ga~v~~ 380 (381)
+|+|+|+.||+|+.
T Consensus 506 ~~~~~p~~GA~i~~ 519 (520)
T 3v2u_C 506 IIVSKPALGTCLYE 519 (520)
T ss_dssp EEECCCCCCSEEEE
T ss_pred EEEecCCCceEEee
Confidence 99999999999975
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=7.4e-54 Score=436.77 Aligned_cols=353 Identities=40% Similarity=0.653 Sum_probs=295.4
Q ss_pred CCCCccchhh-hHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 016879 3 PLFHLWCFVF-FRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTC 81 (381)
Q Consensus 3 ~~~~~W~~yv-~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~ 81 (381)
+++..|.||+ ++++++.+.+.. + ...||+++|+|+||+++|||||||++||++.|++.+++.++++++++++|.
T Consensus 122 ~~~~~~~n~v~~a~~~v~~~~~~-~----~~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~ 196 (478)
T 2a2c_A 122 KTKPLWHNYFLCGLKGIQEHFGL-S----NLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICA 196 (478)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTC-C----SCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHhc-c----CCCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3567899999 888888877643 1 147999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHH
Q 016879 82 ECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVL 161 (381)
Q Consensus 82 ~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l 161 (381)
++|+++|.++|+|||+++++|+.|.+++++|++..++++++|+++.|+|++|++++++..+ .+||.|++||+.|+++|
T Consensus 197 ~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~f~~~~~~~~~~~~~~~~vi~~s~~~~~t~~t--~~yn~r~~e~~~A~~~L 274 (478)
T 2a2c_A 197 KSERYIGTEGGGMDQSISFLAEEGTAKLIEFSPLRATDVKLPSGAVFVIANSCVEMNKAAT--SHFNIRVMECRLAAKLL 274 (478)
T ss_dssp HHHGGGTCCCCSHHHHHHHHCBTTBEEEEETTTTEEEEECCCTTEEEEEEECCCCCCGGGS--SHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCccHHHHHHHhccCCcEEEEEcCCCceEEecCCCCcEEEEEeCCCccccccc--chhHHHHHHHHHHHHHH
Confidence 9999999999999999999997777999999999889999998999999999997654444 79999999999999999
Q ss_pred HHHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhh
Q 016879 162 AIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAA 241 (381)
Q Consensus 162 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (381)
+++.++.+ .++++|+++...+ ..++.++++.|++++.+.+++.+++.+.+|.+.+++.+.+++.+++ ..
T Consensus 275 ~~~~~~~~----~~~~~l~d~~~~~-----~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~--~~ 343 (478)
T 2a2c_A 275 AKYKSLQW----DKVLRLEEVQAKL-----GISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQ--DV 343 (478)
T ss_dssp HHHTTCCT----TTCCCHHHHHHHH-----TCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGT--TC
T ss_pred Hhhhcccc----cccchHHhhhhhh-----cccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccc--cc
Confidence 99977653 2356788775432 1233478899999998888888888888776666655555544332 22
Q ss_pred hhHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcC
Q 016879 242 KQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTG 321 (381)
Q Consensus 242 ~~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sG 321 (381)
..+++++|+.|++.|+.|+.+++++|.+. .++|++.||++|+++|.++|++|++|||++|+|++++++.|++|+||||
T Consensus 344 ~~~~~~~ra~h~~~e~~rv~~~~~aL~~~--~~~d~~~lg~lm~~sh~slr~l~~vs~peld~l~~~a~~~Ga~GarltG 421 (478)
T 2a2c_A 344 LIFKLYQRAKHVYSEAARVLQFKKICEEA--PENMVQLLGELMNQSHMSCRDMYECSCPELDQLVDICRKFGAQGSRLTG 421 (478)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHC--CTTHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHTTCSEEEECT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCCCcEEEecc
Confidence 33467899999999999999999999871 1247999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCC-CcccCCCCcceEEEeeCCCceeecc
Q 016879 322 AGWGGCVVALVKESIDSQFILNLKEQFYQSRIDR-GVINNNDLGLYVFASKPSSGAAKFK 380 (381)
Q Consensus 322 aG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~Ga~v~~ 380 (381)
||||||+++|++++.+++++++|++.|++..+.. + + ..+.+|+++|+.||+++.
T Consensus 422 AG~GG~viaLv~~~~~~~~~~~l~~~y~~~~~~~~~-~----~~~~~~~~~p~~Ga~~~~ 476 (478)
T 2a2c_A 422 AGWGGCTVSMVPADKLPSFLANVHKAYYQRSDGSLA-P----EKQSLFATKPGGGALVLL 476 (478)
T ss_dssp TCSSSEEEEEEEGGGHHHHHHHHHHHHHC--------------CCSEEEECCBCCCEEEE
T ss_pred CCCccEEEEEEcHHHHHHHHHHHHHHHHHhcCcccc-C----CCCcEEEEcCCCCeEeec
Confidence 9999999999999889999999999998765200 1 1 134789999999999874
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=5.7e-45 Score=365.59 Aligned_cols=297 Identities=28% Similarity=0.438 Sum_probs=250.7
Q ss_pred CccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh
Q 016879 6 HLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 85 (381)
Q Consensus 6 ~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~ 85 (381)
..|.||+ ++++..+.+.+..+ ..|+++++.++||.++|||||||+++|++.|++.+++.++++++|+++|.++|+
T Consensus 118 ~~~~n~v---~~~~~~l~~~g~~~--~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~ 192 (419)
T 1pie_A 118 ELWSNYV---KGMIVMLKGAGYEI--DKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTEN 192 (419)
T ss_dssp TCTHHHH---HHHHHHHHHTTCCC--CSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred cCHHHHH---HHHHHHHHHhCCCC--CCCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 7899999 77888887765432 379999999999999999999999999999999999999999999999999996
Q ss_pred -hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecC-CCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHH
Q 016879 86 -FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP-AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 163 (381)
Q Consensus 86 -~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~-~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~ 163 (381)
+.|.++|+|||+++++||.+.++++++++..++++++| +++.+++++|+++ +.+..+.||.|+.||+.++++|.+
T Consensus 193 ~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~~~~~l~~~~~~~~~vl~~~~~~---~~t~~~~y~~r~~~~~~a~~~l~~ 269 (419)
T 1pie_A 193 DYIGVNSGILDQFAIGFGEVKKAIELDCNTLKYEMVPVELRDYDIVIMNTNKP---RALTESKYNERFAETREALKRMQT 269 (419)
T ss_dssp HTTCCCCCSHHHHHHHHCBTTEEEEEETTTCCEEEEECCCTTEEEEEEECCCC---CCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCccchhHHHHHhccCCeEEEeecCCCceEEeecCCCCcEEEEEECCCc---cccccchHHHHHHHHHHHHHHHhh
Confidence 77889999999999999988888899998888999987 6899999999985 456668999999999999999876
Q ss_pred HhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhh
Q 016879 164 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 243 (381)
Q Consensus 164 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
..++ +.|+++.+ +++..... .+ .+
T Consensus 270 ~~~v---------~~l~~~~~-----------------------------~~~~~~~~------------~l------~~ 293 (419)
T 1pie_A 270 RLDI---------QSLGELSN-----------------------------EEFDANTD------------LI------GD 293 (419)
T ss_dssp HCCC---------SSGGGCCH-----------------------------HHHHHTGG------------GT------CC
T ss_pred cccc---------CchhhCCH-----------------------------HHHHHHHh------------hc------Cc
Confidence 5221 23333211 11111100 00 01
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhC-CCcEEEEcCC
Q 016879 244 YKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNN-GALGARLTGA 322 (381)
Q Consensus 244 ~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~-Ga~Gak~sGa 322 (381)
+..++|+.|++.|+.|+.+++++|.++ |++.||++|+++|..+++.|++++|++|++++.+++. |++|+|||||
T Consensus 294 ~~~~~~~~~~v~e~~r~~~~~~al~~~-----d~~~lg~lm~~~~~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~lsGa 368 (419)
T 1pie_A 294 ETLIKRARHAVYENNRTKIAQKAFVAG-----NLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGA 368 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcCCCceeeEecC
Confidence 135788999999999999999999986 5999999999999999998899999999999999997 9999999999
Q ss_pred CCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeecc
Q 016879 323 GWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFK 380 (381)
Q Consensus 323 G~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~ 380 (381)
|||||+++|++++.+++++++|++.|++... ..+.+|+++|+.|+++++
T Consensus 369 G~Gg~v~al~~~~~a~~~~~~l~~~~~~~~g---------~~~~~~~~~~~~Ga~v~~ 417 (419)
T 1pie_A 369 GFGGCAIALVAHDNVSAFRKAVGQVYEEVVG---------YPASFYVAQIGSGSTKLD 417 (419)
T ss_dssp CSSSEEEEEEEGGGHHHHHHHHHHHHHHHHS---------SCCEEEECCBCCCSBCC-
T ss_pred CCCeEEEEEEchhhHHHHHHHHHHHHHHhcC---------CCCeEEEEcCCCCeeecc
Confidence 9999999999988899999999999976542 257899999999999875
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.3e-43 Score=353.53 Aligned_cols=287 Identities=29% Similarity=0.414 Sum_probs=240.0
Q ss_pred CCccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 016879 5 FHLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 84 (381)
Q Consensus 5 ~~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E 84 (381)
...|.||+ ++++..+ .+.. ..|++++++|+||.++|||||||+++|++.|++.+++.++++++|+++|.++|
T Consensus 110 ~~~~~n~v---~~a~~~l--~~~~---~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E 181 (399)
T 1wuu_A 110 TPRWANYV---KGVIQYY--PAAP---LPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAE 181 (399)
T ss_dssp SSGGGHHH---HHHHHHC--SSSC---CCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH
T ss_pred CCCHHHHH---HHHHHHh--cCCC---CCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 46799999 7777776 3432 37999999999999999999999999999999999999999999999999999
Q ss_pred h-hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCC-CcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHH
Q 016879 85 Q-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLA 162 (381)
Q Consensus 85 ~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~-~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~ 162 (381)
+ +.|.++|+|||+++++||.+.++++++++..++++++|. ++.+++++|+++ +.|....||.|+.||+.++++|+
T Consensus 182 ~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~---~~t~~~~y~~r~~~~~~a~~~l~ 258 (399)
T 1wuu_A 182 HSFAGMPCGIMDQFISLMGQKGHALLIDCRSLETSLVPLSDPKLAVLITNSNVR---HSLASSEYPVRRRQCEEVARALG 258 (399)
T ss_dssp HHHTCCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECCCSSEEEEEEEEEEE---C--CTTTHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCccHHHHHHHhccCCeEEEEecCCCceEEecCCCCCeEEEEEECCCc---cccccccHHHHHHHHHHHHHHhC
Confidence 7 778888889999999999988888999888888898874 899999999984 55666799999999999888764
Q ss_pred HHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhh
Q 016879 163 IKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAK 242 (381)
Q Consensus 163 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+. .++++.+ +++.+.+. . -
T Consensus 259 ~~-------------~l~~~~~-----------------------------~~~~~~~~----~---------------l 277 (399)
T 1wuu_A 259 KE-------------SLREVQL-----------------------------EELEAARD----L---------------V 277 (399)
T ss_dssp CS-------------STTSCCH-----------------------------HHHTTGGG----G---------------S
T ss_pred hh-------------hhhcCCH-----------------------------HHHHHHHh----h---------------c
Confidence 32 2222110 11111100 0 0
Q ss_pred hHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHh-CCCcEEEEcC
Q 016879 243 QYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRN-NGALGARLTG 321 (381)
Q Consensus 243 ~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~-~Ga~Gak~sG 321 (381)
....++|+.|++.|..|+.+++++|.++ |++.||++|+++|.++++.+++++|++|++++.+++ .|++|+||||
T Consensus 278 ~~~~~~r~~~~~~e~~r~~~~~~al~~~-----d~~~lg~~m~~~h~~l~~~~~~~~p~l~~l~~~a~~~~Ga~ga~~sG 352 (399)
T 1wuu_A 278 SKEGFRRARHVVGEIRRTAQAAAALRRG-----DYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMTG 352 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHTSTTEEEEEECS
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCceEEeeec
Confidence 1134788999999999999999999986 599999999999999998889999999999999999 7999999999
Q ss_pred CCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeeccC
Q 016879 322 AGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKFKF 381 (381)
Q Consensus 322 aG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~~~ 381 (381)
||||||+++|++++.++++++++++.| + ..+.+++++|+.|++++.+
T Consensus 353 aG~Gg~v~~l~~~~~~~~~~~~l~~~~---~----------~~~~~~~~~~~~Ga~~~~~ 399 (399)
T 1wuu_A 353 GGFGGCTVTLLEASAAPHAMRHIQEHY---G----------GTATFYLSQAADGAKVLCL 399 (399)
T ss_dssp SCSEEEEEEEEEGGGHHHHHHHHHHHC---S----------SCCEEEEECCCCCSEECCC
T ss_pred CCCccEEEEEEccchHHHHHHHHHHHh---C----------CCCcEEEEcCCCCeeeccC
Confidence 999999999999888999999998877 2 2568999999999998743
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=3.1e-42 Score=336.93 Aligned_cols=286 Identities=23% Similarity=0.336 Sum_probs=240.4
Q ss_pred CCccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 016879 5 FHLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 84 (381)
Q Consensus 5 ~~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E 84 (381)
.+.|.||+ ++++..+.+.+.. ..|++++++++||.++|||||||+++|++.|++++++.++++++++++|.++|
T Consensus 64 ~~~~~~~~---~~~~~~l~~~~~~---~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e 137 (350)
T 2cz9_A 64 ENSWIDYV---KGIFWVLKESDYE---VGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAE 137 (350)
T ss_dssp CSSTHHHH---HHHHHHHHHTTCC---CCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCcHHHHH---HHHHHHHHhcCCC---CCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 57899999 7777777766542 37999999999999999999999999999999999999999999999999999
Q ss_pred h-hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHH
Q 016879 85 Q-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 163 (381)
Q Consensus 85 ~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~ 163 (381)
. +.|.++|++|++++.+|+.+.++++|+++..++++++|+++.+++++|++++ .+.+..|+.|+.+|+.+++.++.
T Consensus 138 ~~~~g~~~gi~d~~~~~~g~~~~~~~~d~~~~~~~~l~~~~~~~~vl~~~~~~~---~~~t~~~~~r~~~~~~a~~~~~~ 214 (350)
T 2cz9_A 138 NEFVGVPCGILDQFAVVFGREGNVIFLDTHTLDYEYIPFPKDVSILVFYTGVRR---ELASSEYAERKHIAEESLKILGK 214 (350)
T ss_dssp HHTTCCCCCSHHHHHHHHCCTTEEEEEETTTCCEEEEECCTTEEEEEEECSCC-------CHHHHHHHHHHHHHHHHHTC
T ss_pred HHhcCCCccchhHHHHHhcCCCeEEEEecCCCcEEEEcCCCCcEEEEEECCCCC---ccccchHHHHHHHHHHHHHHhCh
Confidence 6 7899999999999999998889999999888899999889999999999853 34445699999999999887642
Q ss_pred HhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhh
Q 016879 164 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 243 (381)
Q Consensus 164 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
+ .||++.. +++ .. ++
T Consensus 215 ~-------------~lr~~~~-----------------------------~~~-~~----l~------------------ 229 (350)
T 2cz9_A 215 G-------------SSKEVRE-----------------------------GEL-SK----LP------------------ 229 (350)
T ss_dssp S-------------CGGGCCG-----------------------------GGG-GG----SC------------------
T ss_pred h-------------hhhhCCH-----------------------------HHH-hh----CC------------------
Confidence 1 3443210 000 00 00
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCC
Q 016879 244 YKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAG 323 (381)
Q Consensus 244 ~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG 323 (381)
..++++..|.+.|..|+.++..+|.++ |++.||++|+++|..+++.+++++|+++++++.+++.|++|+||||||
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~al~~~-----d~~~lg~~~~~~~~~l~~~~~~~~p~l~~l~~~~~~~Ga~ga~lsGaG 304 (350)
T 2cz9_A 230 PLHRKFFGYIVRENARVLEVRDALKEG-----NVEEVGKILTTAHWDLAKNYEVSCKELDFFVERALKLGAYGARLTGAG 304 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSEEEECSSC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 023556778888888999999999986 599999999999999999889999999999999999999999999999
Q ss_pred CcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 016879 324 WGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 378 (381)
Q Consensus 324 ~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 378 (381)
||||+++|++++.+++++++|++.|.+.+. +.+.+|+++|+.|+++
T Consensus 305 ~G~~v~~l~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~Ga~~ 350 (350)
T 2cz9_A 305 FGGSAIALVDKEDAETIGEEILREYLKRFP---------WKARHFIVEPSDGVGI 350 (350)
T ss_dssp SSSEEEEEEEGGGHHHHHHHHHHHHHHHCC---------SCCEEEEECEECCSBC
T ss_pred CceEEEEEEchhhHHHHHHHHHHHHHHhhC---------CCCcEEEecCCCCCCC
Confidence 999999999988899999999998876522 2678999999999975
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-38 Score=312.66 Aligned_cols=240 Identities=16% Similarity=0.249 Sum_probs=176.7
Q ss_pred CCccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 016879 5 FHLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 84 (381)
Q Consensus 5 ~~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E 84 (381)
...|.||+ ++++..+.+.+.. ...||++.+.++||.++|||||||++||++.|++.+++.++++++++++|.++|
T Consensus 74 ~~~~~~~v---~~~~~~l~~~~~~--~~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E 148 (357)
T 3k85_A 74 IDGEASLI---KGVYNRIIRDYRL--EPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIE 148 (357)
T ss_dssp CCSSSHHH---HHHHHHHHHHTTC--CCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred ccchHHHH---HHHHHHHHHhcCC--CCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 36799999 8888888877642 147999999999999999999999999999999999999999999999999999
Q ss_pred h-hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCC------cEEEEEeCCcchhhhhhcccchhhHHHHHHHH
Q 016879 85 Q-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAG------GTFVVAHSLAESLKAITAASNYNNRVVECRLT 157 (381)
Q Consensus 85 ~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~------~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a 157 (381)
+ +.|.+||.|||+++++||...+.+.++.+..++++++|+. +.++|++|+.+++ +
T Consensus 149 ~~~~G~~~G~~D~~a~~~Gg~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~lvi~~t~~~~~---a--------------- 210 (357)
T 3k85_A 149 RKDLGLSGGKQDQYAAAFGGFNYMEFLQNDLVIVNPLKMKRWIVDELESSMVLYFTGRSRS---S--------------- 210 (357)
T ss_dssp HTTTCCCCCSHHHHHHHHCSEEEEEEETTTEEEEEEECCCHHHHHHHHHTEEEECC------------------------
T ss_pred HHHccCCCcHHHHHHHHhCCceEEEEeCCCceeEEEEecChhhhhhcCceEEEEECCCccc---H---------------
Confidence 7 7899999999999999997655555666667788888753 5788999987432 1
Q ss_pred HHHHHHHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhH
Q 016879 158 AIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDV 237 (381)
Q Consensus 158 ~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (381)
++++.+. .+.+.+. +
T Consensus 211 ~~~l~~~--------------------------------------~~~~~~~---------------~------------ 225 (357)
T 3k85_A 211 AAIINEQ--------------------------------------KKNTSEG---------------N------------ 225 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH--------------------------------------HHHhhcC---------------c------------
Confidence 1111110 0000000 0
Q ss_pred HhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhh-ccCCChHHHHHHHHHHhCCCcE
Q 016879 238 LNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALG 316 (381)
Q Consensus 238 ~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~-~~vs~peld~l~~~a~~~Ga~G 316 (381)
..+.++.|.+.| ++.+++++|.++ |++.||++|+++|.+++++ +++|+|++|+|++.|++.|++|
T Consensus 226 -------~~~~~~~~~i~~--~~~~~~~aL~~~-----d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~G 291 (357)
T 3k85_A 226 -------QTAIEAMHKIKQ--SAIDTKLALLKG-----DVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAMA 291 (357)
T ss_dssp -------CCTTHHHHHHHH--HHHHHHHHHTTT-----CHHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCSE
T ss_pred -------HHHHHHHHHHHH--HHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCeE
Confidence 012345555554 778899999886 5999999999999999987 8999999999999999999999
Q ss_pred EEEcCCCCcceEEEEEeCCcHHHHHHHHHH
Q 016879 317 ARLTGAGWGGCVVALVKESIDSQFILNLKE 346 (381)
Q Consensus 317 ak~sGaG~GG~vi~l~~~~~~~~~~~~l~~ 346 (381)
+||||||+|||+++|++++.+++++++|++
T Consensus 292 aklsGaG~gG~vial~~~~~~~~~~~~l~~ 321 (357)
T 3k85_A 292 GKVSGAGGGGFIMFVVEPTRKEEVVRALNN 321 (357)
T ss_dssp EEECCCC---CEEEECCHHHHHHHHHHHHT
T ss_pred eEecccCCCCEEEEEecHHHHHHHHHHHHH
Confidence 999999999999999988778888888855
No 7
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=7.9e-35 Score=289.68 Aligned_cols=263 Identities=21% Similarity=0.253 Sum_probs=199.8
Q ss_pred Cccchhh--hHHHHHHHHHHHc-CCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCC-----CCC-----
Q 016879 6 HLWCFVF--FRYKAFYEYVKAK-GLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGV-----EVP----- 72 (381)
Q Consensus 6 ~~W~~yv--~~~~g~~~~l~~~-~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~-----~ls----- 72 (381)
..|.+|+ .+++.++..+... +.. ....|++++++++||.++|||||||++||++.|++.+++. +++
T Consensus 98 ~~~~~y~~~~~~~~~l~~~~~~~~~~-~~~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~ 176 (395)
T 1kvk_A 98 PRDCVGNEGLSLLAFLYLYLAICRKQ-RTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGS 176 (395)
T ss_dssp SCCCSCTTHHHHHHHHHHHHHHHTTS-SSCCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEEC
T ss_pred ccccchhhHHHHHHHHHHHHHHhccc-cCCCCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHhCcccccccccccccc
Confidence 3899996 6667777666543 321 0136999999999999999999999999999999999998 788
Q ss_pred --H---HHHHHHHHHhhh-hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccc
Q 016879 73 --K---KEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASN 146 (381)
Q Consensus 73 --~---~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~ 146 (381)
+ .+++++|.++|+ +.|.++|. ||+++++||. +++ ++..++++++++++.+++++|+++.++...
T Consensus 177 ~~~~~l~~l~~~A~~~E~~~~G~~sG~-D~~~~~~Gg~---~~~--~~~~~~~l~~~~~~~~vl~~~~~~~~T~~~---- 246 (395)
T 1kvk_A 177 WPEEDLKSINKWAYEGERVIHGNPSGV-DNSVSTWGGA---LRY--QQGKMSSLKRLPALQILLTNTKVPRSTKAL---- 246 (395)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSCCSH-HHHHHHHCSE---EEE--SSSCEEECSCCCCEEEEEEECCCCCCHHHH----
T ss_pred cchhhHHHHHHHHHHhhheEecCCCCc-chHHhhhcce---EEE--cCCCceeccCCCCcEEEEEECCCCCchHHH----
Confidence 7 556666889997 66787776 9999999983 343 344677887777899999999986532211
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhh
Q 016879 147 YNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTS 226 (381)
Q Consensus 147 y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 226 (381)
. +.+++.....+ ..+
T Consensus 247 -----------~-----------------------------------------~~~~~~~~~~~---~~~---------- 261 (395)
T 1kvk_A 247 -----------V-----------------------------------------AGVRSRLIKFP---EIM---------- 261 (395)
T ss_dssp -----------H-----------------------------------------HHHHHHHHHSH---HHH----------
T ss_pred -----------H-----------------------------------------HHHHHHHHHCH---HHH----------
Confidence 0 00000000000 000
Q ss_pred hhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHH-HHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHH
Q 016879 227 IFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAF-KDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEEL 305 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~-~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l 305 (381)
..+++++.|++.|..|+... +.++.+ +|++.||++|+++|..+++ |++++|++|++
T Consensus 262 -----------------~~~~~~~~~~~~~~~~~l~~~~~al~~-----~d~~~lg~lm~~~~~~l~~-~~~~~p~l~~l 318 (395)
T 1kvk_A 262 -----------------APLLTSIDAISLECERVLGEMAAAPVP-----EQYLVLEELMDMNQHHLNA-LGVGHASLDQL 318 (395)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHTTCCCH-----HHHHHHHHHHHHHHHHHHH-HTCCCHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHhhhccccH-----HHHHHHHHHHHHHHHHHHH-cCCCCHHHHHH
Confidence 02467788888888776654 345543 5899999999999999997 79999999999
Q ss_pred HHHHHhCCCcEEEEcCCCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEee-CCCceeecc
Q 016879 306 VNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASK-PSSGAAKFK 380 (381)
Q Consensus 306 ~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~Ga~v~~ 380 (381)
++.+++.|+ |+||||||||||+++|++++..+++++++.+.|.+.++ .+|+++ ++.|+++..
T Consensus 319 ~~~a~~~Ga-ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~G~~v~~ 381 (395)
T 1kvk_A 319 CQVTAAHGL-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCGF------------DCWETSIGAPGVSMHS 381 (395)
T ss_dssp HHHHHHTTC-EEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHTTC------------EEEEEEESCCCSEEEC
T ss_pred HHHHHHcCC-ceeeccCCCCCEEEEEecCCCCHHHHHHHHHHHHHcCC------------EEEEEecCCCcEEEEe
Confidence 999999999 99999999999999999888888999999888876532 477777 778998864
No 8
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=6.7e-34 Score=280.22 Aligned_cols=235 Identities=15% Similarity=0.214 Sum_probs=182.2
Q ss_pred CCCccchhh-hHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCC----CCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 016879 4 LFHLWCFVF-FRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPT----GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQ 78 (381)
Q Consensus 4 ~~~~W~~yv-~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~----g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~ 78 (381)
+.+.| +|+ ++++.+.+++.+.|.. ..||+++|.|+||. ++|||||||++||++.|++.+++.++++++|++
T Consensus 71 ~~~~~-~yv~~~i~~~~~~~~~~g~~---~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~ 146 (365)
T 3k17_A 71 DGEHW-TFTAEAINIATTFLKSEGIE---LTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFK 146 (365)
T ss_dssp SCGGG-HHHHHHHHHHHHHHHHTTCC---CCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHH
T ss_pred CCChH-HHHHHHHHHHHHHHHhcCCC---CCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34567 999 6666666677777753 47999999999996 579999999999999999999999999999999
Q ss_pred HHHHhhhhhCCCCCcchhhhhhhccCCceEEee-cC----------------------CCeeEEeecCCCcEEEEEeCCc
Q 016879 79 LTCECEQFIGTQSGGMDQAISIMAKSGFAELID-FN----------------------PIRTTDVQLPAGGTFVVAHSLA 135 (381)
Q Consensus 79 la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~-~~----------------------~~~~~~i~~~~~~~~ll~~s~~ 135 (381)
+|+++|+.+++++|++||+++++||. .+++ +. +..++++++|.+ .+++++|++
T Consensus 147 ~a~~~E~~~~g~~~g~D~~~~~~Gg~---~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~ 222 (365)
T 3k17_A 147 LAALSHLVVQGNGSCGDIASCMYGGW---IAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGT 222 (365)
T ss_dssp HHHHHHHHHHSSCCSHHHHHHHHCSE---EEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSS-EEEEEECSC
T ss_pred HHHHHHHHhCCCCCcccHHHHhcCCE---EEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCcc-cEEEEECCC
Confidence 99999985555889999999999993 3433 22 356778888888 999999998
Q ss_pred chhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHH
Q 016879 136 ESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALD 215 (381)
Q Consensus 136 ~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 215 (381)
++++... . +.|+++....
T Consensus 223 ~~sT~~~---------------~-----------------------------------------~~v~~~~~~~------ 240 (365)
T 3k17_A 223 PVSTGKL---------------V-----------------------------------------SQIHAFKQED------ 240 (365)
T ss_dssp CCCHHHH---------------H-----------------------------------------HHHHHHHHHC------
T ss_pred ccchHHH---------------H-----------------------------------------HHHHHHHHhC------
Confidence 6532210 0 0111110000
Q ss_pred HHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHH-HhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhh
Q 016879 216 IEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEA-KRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL 294 (381)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~-~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~ 294 (381)
-.+..+++.|. .++.+++++|.++ |++.||++|+++|..|+++
T Consensus 241 -------------------------------~~~~~~~~~~~~~~~~~~~~aL~~g-----d~~~lg~lm~~~~~~l~~l 284 (365)
T 3k17_A 241 -------------------------------SKNYQHFLTRNNEIMKQIIQAFHTK-----DEELLYSSIKENRRILQEL 284 (365)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------hHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHh
Confidence 01134455554 4678899999886 5999999999999999984
Q ss_pred ccC------CChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeCC-cHHHHHHHHHH
Q 016879 295 YEC------SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKE 346 (381)
Q Consensus 295 ~~v------s~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~-~~~~~~~~l~~ 346 (381)
++ ++|++|+|++.+++.|++ +||||||||||+++|++++ .++++.+++++
T Consensus 285 -~v~~~~~is~p~ld~l~~~a~~~Ga~-ak~sGAGgGg~vial~~~~~~~~~l~~~l~~ 341 (365)
T 3k17_A 285 -GTKAGVNIETSLLKELADSAENMGGA-GKSSGSGGGDCGIAFSKTKELAEKLVNEWEK 341 (365)
T ss_dssp -HHHHTCCCSCHHHHHHHHHHHHTTSE-EEECTTCSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred -hhhcCCcccCHHHHHHHHHHHhcCCE-EEecCCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 56 999999999999999998 9999999999999999763 45666666654
No 9
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=3.8e-33 Score=270.20 Aligned_cols=231 Identities=17% Similarity=0.175 Sum_probs=177.8
Q ss_pred ccchhh-hHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCC---CCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 016879 7 LWCFVF-FRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCE 82 (381)
Q Consensus 7 ~W~~yv-~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g---~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~ 82 (381)
.|.+|+ .+++.+..++...+.. .+|+++.|.|++|.+ +|||||||++||++.|++.++++++++++++++|+.
T Consensus 61 ~~~~~~~~~i~~~~~~l~~~~~~---~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~ 137 (335)
T 3gon_A 61 PDYSLIQETIALMGDFLAVRGQN---LRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSA 137 (335)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCC---CCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCC---CCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHH
Confidence 344566 6668888899888764 589999999999987 699999999999999999999999999999999999
Q ss_pred hhhhhCCCCCcchhhhhhhccCCceEEeecC---------------------CCeeEEeecCCCcEEEEEeCCcchhhhh
Q 016879 83 CEQFIGTQSGGMDQAISIMAKSGFAELIDFN---------------------PIRTTDVQLPAGGTFVVAHSLAESLKAI 141 (381)
Q Consensus 83 ~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~---------------------~~~~~~i~~~~~~~~ll~~s~~~~~~~~ 141 (381)
+|+.++..+|+|||+++++||. +.|..++ .....+++.|.++.+++++++.+.++..
T Consensus 138 ~E~~~~g~~sg~D~a~a~~Gg~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~t~~ 215 (335)
T 3gon_A 138 VLLKRGDNGSMGDLACIAAEDL--VLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAVSSH 215 (335)
T ss_dssp HHHHTTCCSCSHHHHHHHHTSC--EEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCCHHH
T ss_pred HHHHhcCCCCCCCcceeecCCe--EEEEeCCccccceeecccchhheecccccceeEEcCCccccceEEeecCChhhHHH
Confidence 9997888888899999999995 3332221 1245566677789999999988543211
Q ss_pred hcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhh
Q 016879 142 TAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITE 221 (381)
Q Consensus 142 ~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 221 (381)
. ++.|++. ..
T Consensus 216 ~--------------------------------------------------------v~~v~~~-----~~--------- 225 (335)
T 3gon_A 216 M--------------------------------------------------------VQQIKQN-----IN--------- 225 (335)
T ss_dssp H--------------------------------------------------------HHHHGGG-----CC---------
T ss_pred H--------------------------------------------------------HHHHHHH-----hH---------
Confidence 0 0001000 00
Q ss_pred hhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhc-cCCCh
Q 016879 222 EKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-ECSCP 300 (381)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~-~vs~p 300 (381)
..++.....++.++..+|.++ |++.||++|+++|.+|++++ ++++|
T Consensus 226 ----------------------------~~~~~~~~~~~~~~~~aL~~~-----d~~~lg~lm~~~h~~l~~l~~~is~p 272 (335)
T 3gon_A 226 ----------------------------QNFLTSSKETVVSLVEALEQG-----KSEKIIEQVEVASKLLEGLSTDIYTP 272 (335)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHCTTTCCH
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHhC-----cHHHHHHHHHHHHHHHHhCCCcCCCH
Confidence 001112235677888899876 59999999999999999964 78999
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeC-CcHHHHHHHHHH
Q 016879 301 ELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKE 346 (381)
Q Consensus 301 eld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~-~~~~~~~~~l~~ 346 (381)
++|+|++.|++.|+ |+||||||||||+++|+++ +.++.+.++|++
T Consensus 273 ~ld~l~~~a~~~g~-~akltGAG~Ggc~ial~~~~~~~~~i~~~~~~ 318 (335)
T 3gon_A 273 LLRQLKEASQDLQA-VAKSSGAGGGDCGIALSFDAQSTKTLKNRWAD 318 (335)
T ss_dssp HHHHHHHTTTTSSE-EEEECTTCSSSEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc-EEEEccccchheEEEEECCHHHHHHHHHHHHH
Confidence 99999999999996 8999999999999999975 345555555544
No 10
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=100.00 E-value=2.8e-33 Score=273.03 Aligned_cols=233 Identities=16% Similarity=0.160 Sum_probs=180.7
Q ss_pred CCCccchhh-hHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCC---CCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 016879 4 LFHLWCFVF-FRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 79 (381)
Q Consensus 4 ~~~~W~~yv-~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g---~GLGSSaA~~va~~~al~~~~g~~ls~~el~~l 79 (381)
+++.| +|+ ++++.+.+++...|.. ..||+++|.|+||.+ +|||||||++||++.|++++++.++++++++++
T Consensus 61 ~~~~~-~~v~~~i~~~~~~~~~~g~~---~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~l 136 (337)
T 2pg9_A 61 PNPDY-SLIQETIALMGDFLAVRGQN---LRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKL 136 (337)
T ss_dssp CCTTT-HHHHHHHHHHHHHHHHTTCC---CCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCCCc-HHHHHHHHHHHHHHHhcCCC---CCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45678 899 6666666666666653 479999999999999 999999999999999999999999999999999
Q ss_pred HHHhhhhhCCCCCcchhhhhhhccCCceEEe--ecC-------------------CCeeEEeecCCCcEEEEEeCCcchh
Q 016879 80 TCECEQFIGTQSGGMDQAISIMAKSGFAELI--DFN-------------------PIRTTDVQLPAGGTFVVAHSLAESL 138 (381)
Q Consensus 80 a~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~--~~~-------------------~~~~~~i~~~~~~~~ll~~s~~~~~ 138 (381)
|.++|.++|.++|++|++++++||.. .+. +.. +..++++++|.++.+++++|+++.+
T Consensus 137 a~~~E~~~~~~~~~~D~~~~~~Gg~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~lvl~~~~~~~~ 214 (337)
T 2pg9_A 137 TSAVLLKRGDNGSMGDLACIAAEDLV--LYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEVAV 214 (337)
T ss_dssp HHHHHHHTTCCSCSHHHHHHHHTSCE--EEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCCCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHhCCEE--EEecCChHHhhhhhcccchhhhcccccccceeeecCCCCceEEEEECCCccc
Confidence 99999989999999999999999952 222 221 2457788888899999999998643
Q ss_pred hhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHH
Q 016879 139 KAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEK 218 (381)
Q Consensus 139 ~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 218 (381)
+.. +.+.+ ++. +. +++
T Consensus 215 T~~---------------~~~~~-----------------------------------------~~~-----~~-~~~-- 230 (337)
T 2pg9_A 215 SSH---------------MVQQI-----------------------------------------KQN-----IN-QNF-- 230 (337)
T ss_dssp HHH---------------HHHHH-----------------------------------------GGG-----CC-HHH--
T ss_pred hHH---------------HHHHH-----------------------------------------HHH-----HH-HHH--
Confidence 211 00000 000 00 000
Q ss_pred HhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhc-cC
Q 016879 219 ITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-EC 297 (381)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~-~v 297 (381)
..+ -..++.+++++|.++ |++.||++|+++|+.++++. ++
T Consensus 231 ----------------------------~~~------~~~~~~~~~~aL~~~-----d~~~lg~~m~~~~~~l~~l~~~v 271 (337)
T 2pg9_A 231 ----------------------------LTS------SKETVVSLVEALEQG-----KSEKIIEQVEVASKLLEGLSTDI 271 (337)
T ss_dssp ----------------------------HHH------HHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHCTTT
T ss_pred ----------------------------HHH------HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCcC
Confidence 000 124566788889876 59999999999999999874 39
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeCC-cHHHHHHHHHH
Q 016879 298 SCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKE 346 (381)
Q Consensus 298 s~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~-~~~~~~~~l~~ 346 (381)
++|++|+|++.+++.|++ +||||||||||+++|++++ .++++.++|++
T Consensus 272 ~~p~l~~l~~~a~~~Ga~-ak~sGaGgGg~vial~~~~~~~~~~~~~l~~ 320 (337)
T 2pg9_A 272 YTPLLRQLKEASQDLQAV-AKSSGAGGGDCGIALSFDAQSTKTLKNRWAD 320 (337)
T ss_dssp CCHHHHHHHHTTTTSSEE-EEECTTCSSSEEEEEECSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCE-EEEeCCCCccEEEEEECCHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999763 45666655543
No 11
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.98 E-value=1e-30 Score=253.29 Aligned_cols=225 Identities=28% Similarity=0.285 Sum_probs=168.0
Q ss_pred CCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEee
Q 016879 32 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 111 (381)
Q Consensus 32 ~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~ 111 (381)
..|+++++.++||.++|||||||+++|++.|++++++.++++++++++|.++|+.++..+|++|++++++||. +++
T Consensus 95 ~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~~D~~~~~~Gg~---~~~- 170 (321)
T 4hac_A 95 INGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAASPTDTYVSTFGGV---VTI- 170 (321)
T ss_dssp CCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCSE---EEE-
T ss_pred CCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHcCCe---EEE-
Confidence 4799999999999999999999999999999999999999999999999999985544488999999999983 344
Q ss_pred cCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhhc
Q 016879 112 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 191 (381)
Q Consensus 112 ~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 191 (381)
.+. +++++| ++.+++++|+++.++... ....+.+...
T Consensus 171 ~~~---~~l~~p-~~~~vlv~p~~~~sT~~~------------~~~~~~l~~~--------------------------- 207 (321)
T 4hac_A 171 PER---RKLKTP-DCGIVIGDTGVFSSTKEL------------VANVRQLRES--------------------------- 207 (321)
T ss_dssp TTC---CEECCC-CCEEEEEECCCCCCHHHH------------HHHHHHHHHH---------------------------
T ss_pred cCC---ceeccC-CCEEEEEECCCCccHHHH------------HHHHHHHHhc---------------------------
Confidence 222 234456 899999999986432211 0000000000
Q ss_pred CCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcCC
Q 016879 192 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 271 (381)
Q Consensus 192 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~~ 271 (381)
.+ ..+.. ...... ..+.++..+|.++
T Consensus 208 -----------------~~---~~~~~---------------------------~~~~~~------~~~~~~~~al~~~- 233 (321)
T 4hac_A 208 -----------------YP---DLIEP---------------------------LMTSIG------KISRIGEQLVLSG- 233 (321)
T ss_dssp -----------------CH---HHHHH---------------------------HHHHHH------HHHHHHHHHHHHT-
T ss_pred -----------------CH---HHHHH---------------------------HHHHHH------HHHHHHHHHHHhC-
Confidence 00 00000 000111 1234566788775
Q ss_pred CchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeCCcHHHHHHHHHHHHHhc
Q 016879 272 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQS 351 (381)
Q Consensus 272 ~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~ 351 (381)
|++.|+++|+++|..++ .+++++|+++++++.+++.|++|+||||+|+|||+++|++++.++++.++|++.+
T Consensus 234 ----d~~~lg~~~~~~~~~~~-~~~v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~al~~~~~a~~~~~~l~~~g--- 305 (321)
T 4hac_A 234 ----DYASIGRLMNVNQGLLD-ALGVNILELSQLIYSARAAGAFGAKITGAGGGGCMVALTAPEKCNQVAEAVAGAG--- 305 (321)
T ss_dssp ----CHHHHHHHHHHHHHHHH-HHTCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEECSTTHHHHHHHHHHTT---
T ss_pred ----CHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHHHHHCCCCEEEECccCCCCEEEEEcCHHHHHHHHHHHHhCC---
Confidence 59999999999887554 4689999999999999999999999999999999999996677888888886431
Q ss_pred ccCCCcccCCCCcceEEEeeCCC-ceee
Q 016879 352 RIDRGVINNNDLGLYVFASKPSS-GAAK 378 (381)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~p~~-Ga~v 378 (381)
..++++++.. |++|
T Consensus 306 -------------~~v~~~~~~~~G~~v 320 (321)
T 4hac_A 306 -------------GKVTITKPTEQGLKV 320 (321)
T ss_dssp -------------CEEEEECBCSCSSEE
T ss_pred -------------CeEEEEEECCCceec
Confidence 2588888765 8876
No 12
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.98 E-value=5.9e-31 Score=252.85 Aligned_cols=229 Identities=21% Similarity=0.296 Sum_probs=173.6
Q ss_pred CccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh
Q 016879 6 HLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 85 (381)
Q Consensus 6 ~~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~ 85 (381)
..|.||+ .++++.+.+. ..|++++++++||.++|||||||+++|++.|++++++.++++++++++|.++|+
T Consensus 67 ~~~~~~v---~~~~~~~~~~------~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~ 137 (308)
T 2x7i_A 67 PDHLKSL---VNRFVELNNI------TEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQ 137 (308)
T ss_dssp TSCHHHH---HHHHHHHTTC------CSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHH---HHHHHHHHhh------CCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3699999 6677666532 249999999999999999999999999999999999999999999999999998
Q ss_pred hh-CCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHH
Q 016879 86 FI-GTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 164 (381)
Q Consensus 86 ~~-g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~ 164 (381)
.. |.++ +.|+.++.+|+ +++++ +...++++++|.++.+++++|+++.++... +
T Consensus 138 ~~~g~~s-G~d~~~~~~g~---~~~~~-~g~~~~~~~~~~~~~~vi~~~~~~~sT~~~----~----------------- 191 (308)
T 2x7i_A 138 IAHGKPS-GIDTQTIVSGK---PVWFQ-KGHAETLKTLSLDGYMVVIDTGVKGSTRQA----V----------------- 191 (308)
T ss_dssp HHHSSCC-HHHHHHHHHTS---CEEEE-TTEEEECSCCCBSSEEEEEECCC--CCSCC----C-----------------
T ss_pred HHCCCCc-hHHHHHhhCCc---eEEEE-cCCCceEeccCCCceEEEEECcCCCCHHHH----H-----------------
Confidence 54 5555 56999999987 34555 444566677666889999999885332110 0
Q ss_pred hCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhH
Q 016879 165 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 244 (381)
Q Consensus 165 ~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+.|+ +.....+
T Consensus 192 ------------~~l~-----------------------~~~~~~~---------------------------------- 202 (308)
T 2x7i_A 192 ------------HDVH-----------------------KLCEDPQ---------------------------------- 202 (308)
T ss_dssp ------------C-------------------------------CC----------------------------------
T ss_pred ------------HHHH-----------------------HHHhcCc----------------------------------
Confidence 0010 0000000
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCC
Q 016879 245 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGW 324 (381)
Q Consensus 245 ~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~ 324 (381)
..++ ..++ ..++.++..+|.++ |++.|+++|+++|..+++ +++++|+++++++.+++.|++|+||||+|+
T Consensus 203 ~~~~-~~~~---~~~~~~~~~al~~~-----d~~~l~~~~~~~~~~~~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~ 272 (308)
T 2x7i_A 203 YMSH-VKHI---GKLVLRASDVIEHH-----KFEALADIFNECHADLKA-LTVSHDKIEQLMKIGKENGAIAGKLTGAGR 272 (308)
T ss_dssp HHHH-HHHH---HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHTTCSEEEESBTTT
T ss_pred hHHH-HHHH---HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHCCCcEEEeeccCC
Confidence 0011 1221 13566777888875 599999999999999998 489999999999999999999999999999
Q ss_pred cceEEEEEeC-CcHHHHHHHHHHHH
Q 016879 325 GGCVVALVKE-SIDSQFILNLKEQF 348 (381)
Q Consensus 325 GG~vi~l~~~-~~~~~~~~~l~~~~ 348 (381)
|||+++|+++ +.++++.+++++.|
T Consensus 273 GG~v~~l~~~~~~~~~~~~~l~~~~ 297 (308)
T 2x7i_A 273 GGSMLLLAKDLPTAKNIVKAVEKAG 297 (308)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred CcEEEEEeCChhHHHHHHHHHHhCC
Confidence 9999999987 67788888887654
No 13
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.97 E-value=1.5e-29 Score=245.56 Aligned_cols=233 Identities=25% Similarity=0.414 Sum_probs=173.5
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhh-CCCCCcchhhhhhhccCCceEEee
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFI-GTQSGGMDQAISIMAKSGFAELID 111 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~-g~~~g~~D~~~~~~Gg~~~~~~~~ 111 (381)
.|+++++.++||.++|||||||+++|++.|++++++.++++++|+++|+++|+.+ |.++| .|++++++||. .+++
T Consensus 96 ~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G-~D~~~~~~Gg~---~~~~ 171 (332)
T 2hfs_A 96 DGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSG-ADNTAATYGGL---ILYR 171 (332)
T ss_dssp SEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCS-HHHHHHHHCEE---EEEE
T ss_pred CceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCc-HhHHHHhcCCe---EEEe
Confidence 6999999999999999999999999999999999999999999999999999854 56665 59999999983 3343
Q ss_pred -cCC-CeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhh
Q 016879 112 -FNP-IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 189 (381)
Q Consensus 112 -~~~-~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 189 (381)
... ..++++++|+++.+++++|+++.++.. ++.+. ..+++
T Consensus 172 ~~~g~~~~~~~~~~~~~~~vl~~~~~~~~T~~------------------~~~~~------------~~~~~-------- 213 (332)
T 2hfs_A 172 RQNGKSVFKPIAFQQRLYLVVVGTGINASTAK------------------VVNDV------------HKMKQ-------- 213 (332)
T ss_dssp ECSSSEEEEEECCCSCEEEEEEECSCCCCHHH------------------HHHHH------------HHHHH--------
T ss_pred cCCCCcceeeecCCCCcEEEEEECCCCccHHH------------------HHHHH------------HHHHH--------
Confidence 222 257788887889999999998543221 11000 00000
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhc
Q 016879 190 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 269 (381)
Q Consensus 190 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~ 269 (381)
.. ...+. .+++++.+ ++.++..+|.+
T Consensus 214 ------------------~~---~~~~~---------------------------~~~~~~~~------~~~~~~~al~~ 239 (332)
T 2hfs_A 214 ------------------QQ---PVQFK---------------------------RLYDNYTH------IVSQAREALQK 239 (332)
T ss_dssp ------------------HC---HHHHH---------------------------HHHHHHHH------HHHHHHHHHHH
T ss_pred ------------------hC---HHHHH---------------------------HHHHHHHH------HHHHHHHHHHc
Confidence 00 00000 01222222 34456778887
Q ss_pred CCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeCC-cHHHHHHHHHHHH
Q 016879 270 NLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES-IDSQFILNLKEQF 348 (381)
Q Consensus 270 ~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~-~~~~~~~~l~~~~ 348 (381)
+ |++.|+++|+++|..++.. ++++|+++++++.+++.|++|+||||+|+|||+++|++++ .++++.+++++.|
T Consensus 240 ~-----d~~~l~~~~~~~~~~l~~~-~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~~~ 313 (332)
T 2hfs_A 240 G-----DLQRLGQLMNANHDLCRQI-DVSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKC 313 (332)
T ss_dssp T-----CHHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHTTCSEEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHC
T ss_pred C-----CHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHcCCceEEeccCCCCcEEEEEecCcccHHHHHHHHHHHH
Confidence 5 5999999999999988874 8999999999999999999999999999999999999875 4688999998776
Q ss_pred HhcccCCCcccCCCCcceEEEeeCCCceee
Q 016879 349 YQSRIDRGVINNNDLGLYVFASKPSSGAAK 378 (381)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 378 (381)
.+..+ ...+.+.|++||++
T Consensus 314 ~~~~~-----------~~~~~~~~~~g~~~ 332 (332)
T 2hfs_A 314 PEAKF-----------IWRYTVQPSAASNL 332 (332)
T ss_dssp TTCCE-----------EEEEEECCSCC---
T ss_pred hcCCc-----------eEEEEeccCCCCCC
Confidence 54332 23456779999874
No 14
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.97 E-value=7.5e-29 Score=236.71 Aligned_cols=240 Identities=14% Similarity=0.161 Sum_probs=180.3
Q ss_pred CccchhhhHHHHHHHHHHHc-CCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 016879 6 HLWCFVFFRYKAFYEYVKAK-GLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 84 (381)
Q Consensus 6 ~~W~~yv~~~~g~~~~l~~~-~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E 84 (381)
+.|.||+ ..++..+.+. +. ..|++++++++||.++|||||||+++|++.|++++++.++++++++++|.++|
T Consensus 54 ~~~~n~v---~~a~~~~~~~~g~----~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e 126 (296)
T 1h72_C 54 DPDKNVA---GIVAKKMIDDFNI----GKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGE 126 (296)
T ss_dssp CTTTSHH---HHHHHHHHHHTTC----CCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCccCcH---HHHHHHHHHHhCC----CCCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc
Confidence 3499999 5666666554 32 36999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHH
Q 016879 85 QFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 164 (381)
Q Consensus 85 ~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~ 164 (381)
...+..+++.|..++++||. +++.+..+..++++++|+++.+++++|+++.++.. +.
T Consensus 127 ~~~~g~~~~ddv~~~~~gg~--~~~~~~~~~~~~~~~~~~~~~~vl~~p~~~~~T~~---------------~~------ 183 (296)
T 1h72_C 127 LASSGAKHADNVAPAIFGGF--TMVTNYEPLEVLHIPIDFKLDILIAIPNISINTKE---------------AR------ 183 (296)
T ss_dssp HHHHSSCCCTTHHHHHHCSE--EEEEETTTTEEEEECCCSCCCEEEECCSSCCCHHH---------------HH------
T ss_pred CcccCCCCccchHHHHhCCE--EEEEeCCceEEEEEcCCCCeEEEEEeCCCCccHHH---------------HH------
Confidence 85544444445566899985 44445555667888888889999999987432111 00
Q ss_pred hCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhH
Q 016879 165 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 244 (381)
Q Consensus 165 ~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+.+++. .
T Consensus 184 ---------------------------------------~~l~~~-~--------------------------------- 190 (296)
T 1h72_C 184 ---------------------------------------EILPKA-V--------------------------------- 190 (296)
T ss_dssp ---------------------------------------HTSCSC-C---------------------------------
T ss_pred ---------------------------------------HhccCc-C---------------------------------
Confidence 000000 0
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHH--HHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCC
Q 016879 245 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLM--NDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGA 322 (381)
Q Consensus 245 ~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm--~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGa 322 (381)
+..|.+.+..|+.++..+|.++ |++.||++| ++.|+.++. +++|+++++++.+++. ++|++|||+
T Consensus 191 ----~~~~~~~~~~~~~~~~~al~~~-----d~~~~~~~~~~n~~h~~~~~---~~~p~l~~~~~~~~~~-a~ga~~sGs 257 (296)
T 1h72_C 191 ----GLKDLVNNVGKACGMVYALYNK-----DKSLFGRYMMSDKVIEPVRG---KLIPNYFKIKEEVKDK-VYGITISGS 257 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHTTCCSSHHHHH---TTSTTHHHHHHHHTTT-EEEEEECTT
T ss_pred ----cHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHhcCcchhhhhh---ccCccHHHHHHHHHhh-cceEEEecC
Confidence 0112333445666788889876 599999999 677787774 6899999999999988 899999999
Q ss_pred CCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceeec
Q 016879 323 GWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAKF 379 (381)
Q Consensus 323 G~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~ 379 (381)
| +|+++|++++.++++.+++++.|.+ +.+++|+.|++++
T Consensus 258 G--~~v~~l~~~~~~~~~~~~l~~~~~~----------------~~~~~~~~Ga~v~ 296 (296)
T 1h72_C 258 G--PSIIAFPKEEFIDEVENILRDYYEN----------------TIRTEVGKGVEVV 296 (296)
T ss_dssp S--SCEEEEECGGGHHHHHHHHHHHCSC----------------EEEECBCCCCEEC
T ss_pred C--hheEEEecHHHHHHHHHHHHHhccC----------------ceeccCCCCeEeC
Confidence 9 5999999667788888888766531 1267787799875
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.96 E-value=4e-28 Score=234.01 Aligned_cols=203 Identities=21% Similarity=0.349 Sum_probs=153.4
Q ss_pred CCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEee
Q 016879 32 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 111 (381)
Q Consensus 32 ~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~ 111 (381)
..|+++++.++||.++|||||||+++|++.|++++++.++++++++++|.++|+.++..+|++|++++++||. + ++
T Consensus 97 ~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg~D~~~~~~Gg~--~-~~- 172 (317)
T 1kkh_A 97 KTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITYKGI--L-EI- 172 (317)
T ss_dssp CSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCSHHHHHHHHCSE--E-EE-
T ss_pred CCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHhCCe--E-EE-
Confidence 3699999999999999999999999999999999999999999999999999986666677899999999984 3 33
Q ss_pred cCCCeeEEeecC--C----CcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhh
Q 016879 112 FNPIRTTDVQLP--A----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 185 (381)
Q Consensus 112 ~~~~~~~~i~~~--~----~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~ 185 (381)
++..++++++| + ++.+++++|+++.++... .+.+ +.++
T Consensus 173 -~~~~~~~~~~~~~~~l~~~~~~vl~~~~~~~~T~~~---------------~~~~---------------~~~~----- 216 (317)
T 1kkh_A 173 -KNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAEL---------------VNEV---------------AKIE----- 216 (317)
T ss_dssp -SSSCEEEECHHHHHHHHTCCEEEEEEECCCSCHHHH---------------HHHH---------------HTCT-----
T ss_pred -cCCCceEecCCcccccccCcEEEEEECCCcCcHHHH---------------HHHH---------------HHhh-----
Confidence 34445666543 1 268999999985432210 0000 0000
Q ss_pred hhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHH
Q 016879 186 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 265 (381)
Q Consensus 186 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~ 265 (381)
.. . ....+. .+ .+..
T Consensus 217 --------------------------~~---~---------------------------~~~~~~-------~~--~~~~ 231 (317)
T 1kkh_A 217 --------------------------NK---D---------------------------EIFKEI-------DK--VIDE 231 (317)
T ss_dssp --------------------------TH---H---------------------------HHHHHH-------HH--HHHH
T ss_pred --------------------------cc---H---------------------------HHHHHH-------HH--HHHH
Confidence 00 0 000001 11 1234
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeCCcHHHHHHHHH
Q 016879 266 TVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK 345 (381)
Q Consensus 266 al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~ 345 (381)
++..+ |++.|+++|+++|..+++ +++++|+++++++.+++.| +|+||||+|+|||+++|++++.++++.++++
T Consensus 232 a~~~~-----d~~~l~~~~~~~~~~~~~-~~~~~p~l~~~~~~~~~~G-~ga~~sGaG~GG~v~~l~~~~~~~~~~~~l~ 304 (317)
T 1kkh_A 232 ALKIK-----NKEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIILVNEEKEKELLKELN 304 (317)
T ss_dssp HHHCC-----SHHHHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHHHS-SEEEECSSSSSEEEEEECCGGGHHHHHHHHH
T ss_pred HHHcC-----CHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhcC-ceeEEeecCCCCEEEEEechhhHHHHHHHHH
Confidence 55554 599999999999998886 4899999999999999999 9999999999999999998766777777775
Q ss_pred H
Q 016879 346 E 346 (381)
Q Consensus 346 ~ 346 (381)
+
T Consensus 305 ~ 305 (317)
T 1kkh_A 305 K 305 (317)
T ss_dssp T
T ss_pred h
Confidence 3
No 16
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.96 E-value=2.9e-28 Score=231.96 Aligned_cols=211 Identities=19% Similarity=0.302 Sum_probs=156.1
Q ss_pred CCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh-hhCCCCCcchhhhhhhccCCceEEe
Q 016879 32 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 110 (381)
Q Consensus 32 ~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~-~~g~~~g~~D~~~~~~Gg~~~~~~~ 110 (381)
..|+++++.++||.++|||||||+++|++.|++++++.++++++++++|.++|+ ..+.++| +|++++.+||. + ++
T Consensus 72 ~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g-~d~~~~~~gg~--~-~~ 147 (292)
T 2oi2_A 72 EACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSG-LDAKTCLSDQP--I-RF 147 (292)
T ss_dssp CCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCS-HHHHHHTCSSC--E-EE
T ss_pred CCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCc-hhHHHHhcCce--E-EE
Confidence 369999999999999999999999999999999999999999999999999997 4566666 59999999984 3 33
Q ss_pred ecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhhh
Q 016879 111 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 190 (381)
Q Consensus 111 ~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 190 (381)
.+...+++++++....+++++++++.++... .+.+..
T Consensus 148 -~~~~~~~~~~~~~~~~~~i~~~~~~~sT~~~---------------~~~l~~--------------------------- 184 (292)
T 2oi2_A 148 -IKNVGFTELEMDLSAYLVIADTGVYGHTREA---------------IQVVQN--------------------------- 184 (292)
T ss_dssp -ETTTEEEECCCCCSCEEEEEECSSCCCHHHH---------------HHHHHH---------------------------
T ss_pred -EcCCCceeecCCCCCEEEEEECCCCCcHHHH---------------HHHHHH---------------------------
Confidence 3344556666543333888899875432210 000100
Q ss_pred cCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhcC
Q 016879 191 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 270 (381)
Q Consensus 191 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~ 270 (381)
..+. .++..+.+. ..+.++..+|.++
T Consensus 185 --------------~~~~--------------------------------------~~~~~~~~~--~~~~~~~~al~~~ 210 (292)
T 2oi2_A 185 --------------KGKD--------------------------------------ALPFLHALG--ELTQQAEIAISQK 210 (292)
T ss_dssp --------------TGGG--------------------------------------GHHHHHHHH--HHHHHHHHHHHTT
T ss_pred --------------HHhh--------------------------------------hHHHHHHHH--HHHHHHHHHHHcC
Confidence 0000 001111111 1244567788875
Q ss_pred CCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeC-CcHHHHHHHHHHHHH
Q 016879 271 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE-SIDSQFILNLKEQFY 349 (381)
Q Consensus 271 ~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~-~~~~~~~~~l~~~~~ 349 (381)
|++.|+++|+++|..++. +++++|+++++++.+++.|++|+||||+|+|||+++|+++ +.++++.+++++.+.
T Consensus 211 -----d~~~l~~~~~~~~~~l~~-~~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~~~~ 284 (292)
T 2oi2_A 211 -----DAEGLGQILSQAHLHLKE-IGVSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTNLTHAQELAERLEEKGA 284 (292)
T ss_dssp -----CHHHHHHHHHHHHHHHHH-TTCCCHHHHHHHHHHHTTTCSEEEEESSSSSSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred -----CHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHhCCCceeeeccCCCCcEEEEEecCchHHHHHHHHHHhcCc
Confidence 599999999999999997 4899999999999999999999999999999999999987 577888888877654
No 17
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.91 E-value=4.3e-23 Score=197.72 Aligned_cols=217 Identities=18% Similarity=0.221 Sum_probs=152.2
Q ss_pred CCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEee
Q 016879 32 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 111 (381)
Q Consensus 32 ~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~ 111 (381)
..|+++++.++||.++|||||||+++|++.|++++++.++++++++++|.++| .+..|...+++||. .+..
T Consensus 69 ~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~e------g~~ddv~~~~~GG~---~~~~ 139 (298)
T 3hul_A 69 LTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIE------GHPDNVAPAVLGNW---VVGA 139 (298)
T ss_dssp CCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH------SCSTTHHHHHHCSE---EEEE
T ss_pred CCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc------CCcccCcccccCCE---EEEE
Confidence 36999999999999999999999999999999999999999999999999998 12235667889995 2333
Q ss_pred cCC--CeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhhhhhhh
Q 016879 112 FNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 189 (381)
Q Consensus 112 ~~~--~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 189 (381)
.+. +.+.++++| ++.+++++|++..++... .+ .|
T Consensus 140 g~ge~~~~~~~~~p-~~~~vlv~p~~~~sT~~a---------------~~------------------~l---------- 175 (298)
T 3hul_A 140 KLDGEDFYVRHLFP-DCALIAFIPKAELLTSES---------------RG------------------VL---------- 175 (298)
T ss_dssp EETTEEEEEEECCC--CEEEEEECCCCCC---------------------------------------------------
T ss_pred eCCCcEEEEEcCCC-CeEEEEEECCCCCCcHHH---------------HH------------------HH----------
Confidence 332 334466666 589999999874321110 00 00
Q ss_pred hcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHHHHHhc
Q 016879 190 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 269 (381)
Q Consensus 190 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~~al~~ 269 (381)
++. .+. .. .+.+..++..+..+|.+
T Consensus 176 -----------------~~~-~~~----------------------------------~~---~~~~~~~~~~~~~al~~ 200 (298)
T 3hul_A 176 -----------------PDT-LPF----------------------------------KE---AVQASSIANVMIAAILR 200 (298)
T ss_dssp -----------------CCE-EEH----------------------------------HH---HHHHHHHHHHHHHHHTT
T ss_pred -----------------hhh-ccH----------------------------------HH---HHHHHHHHHHHHHHHHc
Confidence 000 000 00 01122345567788887
Q ss_pred CCCchHHHHHHHHHHHH--HhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcceEEEEEeCCcHHHHHHHHHHH
Q 016879 270 NLSEEDKLKKLGDLMND--SHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQ 347 (381)
Q Consensus 270 ~~~~~~d~~~lg~lm~~--sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~~~ 347 (381)
+ |++.|+++|++ .|+.++.. .+|+++++++.+++.|++|++|||+| +|+++|++++.++++.+++++.
T Consensus 201 ~-----d~~~l~~~l~nd~~~e~~~~~---~~p~l~~l~~~~~~~Ga~ga~~SGsG--ptv~al~~~~~a~~v~~~l~~~ 270 (298)
T 3hul_A 201 N-----DMTLAGEMMERDLWHEKYRSQ---LVPHLAQIRDVAKNQGAYAACLSGAG--PTVLVFAPRNLANKLQTSLQTL 270 (298)
T ss_dssp T-----CHHHHHHHHTCCCC-----CT---TGGGHHHHHHHHHTTTCCEEEECTTS--SCEEEEECGGGHHHHHHHHHTT
T ss_pred C-----CHHHHHHHHhhhHHHHHHHHh---hCchHHHHHHHHHHCCCEEEEEeccc--hheEEEECHHHHHHHHHHHHhc
Confidence 5 59999999973 47777643 48999999999999999999999998 8999999866677766666432
Q ss_pred HHhcccCCCcccCCCCcceEEEeeCCC-ceeecc
Q 016879 348 FYQSRIDRGVINNNDLGLYVFASKPSS-GAAKFK 380 (381)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~p~~-Ga~v~~ 380 (381)
+. .+.++++++.+ |++|.+
T Consensus 271 ----~~----------~~~~~~~~~~~~Ga~v~~ 290 (298)
T 3hul_A 271 ----EI----------DADVLLLDVEGSGAEVFR 290 (298)
T ss_dssp ----CC----------SSEEEEEEBCCCCCEEEE
T ss_pred ----CC----------CcEEEEcccCCCceEEEe
Confidence 21 45788888765 999875
No 18
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.91 E-value=1.3e-22 Score=195.16 Aligned_cols=232 Identities=14% Similarity=0.132 Sum_probs=162.4
Q ss_pred cchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhh
Q 016879 8 WCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFI 87 (381)
Q Consensus 8 W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~ 87 (381)
..|.+ ..++..+.+.... ..|++++++++||.++|||||||.++|++.|++++++.++++++++++|.++|
T Consensus 68 ~~Nlv---~~A~~~l~~~~g~---~~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~--- 138 (306)
T 3pyf_A 68 ERNLA---WQAAELMAEHVGR---APDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLG--- 138 (306)
T ss_dssp TTSHH---HHHHHHHHHHTTC---CCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHC---
T ss_pred CccHH---HHHHHHHHHHhCC---CCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---
Confidence 56777 4444555443221 35999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCC
Q 016879 88 GTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGM 167 (381)
Q Consensus 88 g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~ 167 (381)
.|..++++||. .+.......+.+++.|+++.+++++|++..++... .+.+...
T Consensus 139 ------~Dv~~~~~Gg~---~~~~g~ge~~~~l~~~~~~~~vl~~P~~~vsT~~a---------------~~~l~~~--- 191 (306)
T 3pyf_A 139 ------SDVPFALHGGT---ALGTGRGEELATVLSRNTFHWVLAFADSGLLTSAV---------------YNELDRL--- 191 (306)
T ss_dssp ------TTHHHHHHBSE---EEECSSSSCCEEECCSSCEEEEEEECSSCCCHHHH---------------HHHHHHH---
T ss_pred ------CCCceeecCce---EEEEeeCCeEEEccCCCCcEEEEEECCCCCcHHHH---------------HHhhhhh---
Confidence 49999999983 45555555677888878899999999885332110 0000000
Q ss_pred CchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHH
Q 016879 168 KPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLH 247 (381)
Q Consensus 168 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (381)
.... +
T Consensus 192 --------------------------------------~~~~----------------~--------------------- 196 (306)
T 3pyf_A 192 --------------------------------------REVG----------------D--------------------- 196 (306)
T ss_dssp --------------------------------------HHHS----------------C---------------------
T ss_pred --------------------------------------cccc----------------c---------------------
Confidence 0000 0
Q ss_pred HHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCChHHHHHHHHHHhCCCcEEEEcCCCCcce
Q 016879 248 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGC 327 (381)
Q Consensus 248 ~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~peld~l~~~a~~~Ga~Gak~sGaG~GG~ 327 (381)
. ....++..+..+|.++ |++.|+++|.+..+..+. ..+|+++++++.+++.|++|++|||+| +|
T Consensus 197 --~----~~~~~~~~~~~al~~~-----d~~~l~~~l~n~le~~~~---~~~P~l~~i~~~~~~~Ga~ga~mSGsG--pt 260 (306)
T 3pyf_A 197 --P----PRLGEPGPVLAALAAG-----DPDQLAPLLGNEMQAAAV---SLDPALARALRAGVEAGALAGIVSGSG--PT 260 (306)
T ss_dssp --C----CCCCCHHHHHHHHHHT-----CHHHHGGGCEETTHHHHH---HHCTHHHHHHHHHHHTTCSEEEECTTS--SE
T ss_pred --c----ccccCHHHHHHHHHhC-----CHHHHHHHhccchHHHHH---HhChHHHHHHHHHHhcCCCEEEEcCcc--hh
Confidence 0 0001233456677765 599999988432233332 248999999999999999999999998 99
Q ss_pred EEEEEeCC-cHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeC-CCceeecc
Q 016879 328 VVALVKES-IDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKP-SSGAAKFK 380 (381)
Q Consensus 328 vi~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~Ga~v~~ 380 (381)
+++|++++ .++++.+++++. ++ ...++++++ ..|++|.+
T Consensus 261 vfal~~~~~~a~~~~~~l~~~----g~----------~~~v~~~~~~~~Ga~v~~ 301 (306)
T 3pyf_A 261 CAFLCTSASSAIDVGAQLSGA----GV----------CRTVRVATGPVPGARVVS 301 (306)
T ss_dssp EEEEESSHHHHHHHHHHHHHT----TS----------SSEEEEEEECCBCSEEC-
T ss_pred heEEeCCHHHHHHHHHHHHhc----CC----------cceEEEeecCCCCCEEec
Confidence 99999763 466666666442 21 346777775 55999864
No 19
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.90 E-value=1.4e-22 Score=195.48 Aligned_cols=233 Identities=15% Similarity=0.110 Sum_probs=161.7
Q ss_pred ccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhh
Q 016879 7 LWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF 86 (381)
Q Consensus 7 ~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~ 86 (381)
.|.||+ +.+++.+.+.+. .|++|+++++||.++|||||||+++|++.|+++++|+++++++|+++|.+++-
T Consensus 73 ~~~n~v---~~~~~~~~~~~~-----~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~G- 143 (317)
T 2gs8_A 73 EEHTKI---SAIIDQFRQPGQ-----AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASG- 143 (317)
T ss_dssp HHHHHH---HHHHTTTCCTTC-----CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHG-
T ss_pred chHHHH---HHHHHHHHHhcC-----CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc-
Confidence 688988 666666654431 68999999999999999999999999999999999999999999999988741
Q ss_pred hCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEE--eCCcchhhhhhcccchhhHHHHHHHHHHHHHHH
Q 016879 87 IGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVA--HSLAESLKAITAASNYNNRVVECRLTAIVLAIK 164 (381)
Q Consensus 87 ~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~--~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~ 164 (381)
+...+++||. .....++......++|.++.++++ +++... ......|+..
T Consensus 144 --------~~~~~~~GG~---~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~---~~tt~~~~~~-------------- 195 (317)
T 2gs8_A 144 --------SSSRSFFGPV---AAWDKDSGAIYKVETDLKMAMIMLVLNAAKKP---ISSREGMKLC-------------- 195 (317)
T ss_dssp --------GGGGGGSCSE---EEECTTTCCEEECCCCCCEEEEEEECCCSSCC---SCHHHHHHHH--------------
T ss_pred --------hhHhhhcCCh---heEeeCCCceeEEEccccccEEEEEEECCCcC---cccHHHHHHH--------------
Confidence 3456789984 333333333334455656664433 553311 1000111100
Q ss_pred hCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhH
Q 016879 165 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 244 (381)
Q Consensus 165 ~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
++.. .
T Consensus 196 -----------------------------------------~~~~-~--------------------------------- 200 (317)
T 2gs8_A 196 -----------------------------------------RDTS-T--------------------------------- 200 (317)
T ss_dssp -----------------------------------------HHHC-T---------------------------------
T ss_pred -----------------------------------------hhcC-H---------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhccCCC-------hHHHHHHHHH---HhCCC
Q 016879 245 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSC-------PELEELVNVC---RNNGA 314 (381)
Q Consensus 245 ~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~vs~-------peld~l~~~a---~~~Ga 314 (381)
...+++.|. ..|+.+++.+|.++ |++.||++|+++|..|+..+..++ |.+.++++.+ ++.|+
T Consensus 201 ~~~~~~~~~---~~~~~~~~~al~~~-----d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~ 272 (317)
T 2gs8_A 201 TFDQWVEQS---AIDYQHMLTYLKTN-----NFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGF 272 (317)
T ss_dssp THHHHHHHH---HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHH---HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCC
Confidence 001122221 35777888999886 599999999999988887664444 4456666543 44899
Q ss_pred cEEEEcCCCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEeeCCCceee
Q 016879 315 LGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 378 (381)
Q Consensus 315 ~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Ga~v 378 (381)
.++.|||+| ||+++|++++.++++.+++++ . ..++++++++|++|
T Consensus 273 ~~~~~SGaG--ptv~~l~~~~~~~~v~~~l~~-----~------------~~~~~~~~~~~~~~ 317 (317)
T 2gs8_A 273 ACYFTMDAG--PNVKVLCLEKDLAQLAERLGK-----N------------YRIIVSKTKDLPDV 317 (317)
T ss_dssp CEEEECCSS--SCEEEEEEGGGHHHHHHHHHT-----T------------SEEEEEEBCCCCCC
T ss_pred cEEEEecCC--CeEEEEEcHHHHHHHHHHHhc-----C------------CeEEEEecCCCCCC
Confidence 999999888 999999987777777777755 1 26999999999986
No 20
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.89 E-value=1.8e-21 Score=189.08 Aligned_cols=242 Identities=15% Similarity=0.135 Sum_probs=166.1
Q ss_pred ccchhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhh
Q 016879 7 LWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF 86 (381)
Q Consensus 7 ~W~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~ 86 (381)
+|.|++ ..+++.+.+... ...|++|+++++||.++|||||||.++|++.|+++++++++++++++++|.++|
T Consensus 73 ~~~n~v---~~~~~~~~~~~~---~~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~-- 144 (332)
T 3qt5_A 73 KEKEKI---QNYMNIVRDLAG---NRLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGS-- 144 (332)
T ss_dssp HHHHHH---HHHHHHHHHHHT---CCCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHC--
T ss_pred chHHHH---HHHHHHHHHhcC---CCCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc--
Confidence 488888 556666655421 136899999999999999999999999999999999999999999999999984
Q ss_pred hCCCCCcchhhhhhhccCCceEEee-cC-C--CeeEEee---cCCCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHH
Q 016879 87 IGTQSGGMDQAISIMAKSGFAELID-FN-P--IRTTDVQ---LPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAI 159 (381)
Q Consensus 87 ~g~~~g~~D~~~~~~Gg~~~~~~~~-~~-~--~~~~~i~---~~~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~ 159 (381)
+ |...+++||. .... .. . ....+++ .++++.++++.+.....+..+ |.
T Consensus 145 ------g-~~~~~~~GG~---~~~~~g~~~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss-------~~-------- 199 (332)
T 3qt5_A 145 ------G-SASRSIFGGF---AEWEKGHDDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSS-------RS-------- 199 (332)
T ss_dssp ------G-GGGGGGSCSE---EEEECCSSTTTCEEEEECCTTGGGGEEEEEECCCCCCCC--C-------HH--------
T ss_pred ------C-CchhhhcCCe---EEEecCCCCccceeeecccccCCCCcEEEEEEEcCCCCCCch-------HH--------
Confidence 1 5667889994 2322 21 1 1234554 334788888877653221111 10
Q ss_pred HHHHHhCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHh
Q 016879 160 VLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLN 239 (381)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (381)
.++. ..+.. ..
T Consensus 200 ~~~~-----------------------------------------~~~~s-~~--------------------------- 210 (332)
T 3qt5_A 200 GMSL-----------------------------------------TRDTS-RF--------------------------- 210 (332)
T ss_dssp HHHH-----------------------------------------HHHHC-TT---------------------------
T ss_pred HHHH-----------------------------------------hhhcC-hh---------------------------
Confidence 0000 00000 00
Q ss_pred hhhhHHHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHH----hHHhhhhcc---CCChHHHHHHHHHH--
Q 016879 240 AAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS----HHSCSVLYE---CSCPELEELVNVCR-- 310 (381)
Q Consensus 240 ~~~~~~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~s----h~~lr~~~~---vs~peld~l~~~a~-- 310 (381)
...+..+ -..++..+..+|.++ |++.|+++|.++ |+.++..+. ...|+++++++.+.
T Consensus 211 ------~~~~v~~---~~~~~~~l~~Al~~~-----D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~ 276 (332)
T 3qt5_A 211 ------YQYWLDH---VDEDLNEAKEAVKNQ-----DFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQC 276 (332)
T ss_dssp ------HHHHHHH---HHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHH---HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHH
Confidence 0011111 113667788999876 599999999744 444444321 14799999999885
Q ss_pred -hCCCcEEEEcCCCCcceEEEEEeCCcHHHHHHHHHHHHHhcccCCCcccCCCCcceEEEe-eCCCceeecc
Q 016879 311 -NNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFAS-KPSSGAAKFK 380 (381)
Q Consensus 311 -~~Ga~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~Ga~v~~ 380 (381)
+.|++|+.+||+| +|+++|+++++++++.++|++.|. ...++++ .|+.|+++++
T Consensus 277 ~~~Ga~~a~~SGaG--Ptv~~l~~~~~a~~v~~~l~~~~~--------------~~~~~v~~~~g~G~~~~~ 332 (332)
T 3qt5_A 277 RKANLPCYFTMDAG--PNVKVLVEKKNKQAVMEQFLKVFD--------------ESKIIASDIISSGVEIIK 332 (332)
T ss_dssp HHTTCCEEEECCSS--SCEEEEEEHHHHHHHHHHHHTTSC--------------GGGEEEEEBCSSCCEECC
T ss_pred HhCCCcEEEEeCCC--CcEEEEECHHHHHHHHHHHHHhCC--------------CceEEEeccccCCcEecC
Confidence 7999999999887 999999987778888888866542 2368888 8999999864
No 21
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.84 E-value=1.8e-20 Score=176.99 Aligned_cols=111 Identities=13% Similarity=0.167 Sum_probs=91.1
Q ss_pred ccchhhhHHHHHHHHHHHc-CCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhh
Q 016879 7 LWCFVFFRYKAFYEYVKAK-GLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 85 (381)
Q Consensus 7 ~W~~yv~~~~g~~~~l~~~-~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~ 85 (381)
.|.|++ ..+++.+.+. +. ..|++++++++||.++|||||||.++|++.|++++++.++++++++++|.++|
T Consensus 60 ~~~nlv---~~a~~~~~~~~g~----~~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e- 131 (271)
T 2v8p_A 60 QEENLV---YKGLREFERITGI----EINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSIS- 131 (271)
T ss_dssp TTTCHH---HHHHHHHHHHHCC----CCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHC-
T ss_pred CCchHH---HHHHHHHHHHhCC----CCCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC-
Confidence 589999 5555555443 33 36999999999999999999999999999999999999999999999999997
Q ss_pred hhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcc
Q 016879 86 FIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAE 136 (381)
Q Consensus 86 ~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~ 136 (381)
.|..++++||. .+...+...++++++|.++.+++++|+++
T Consensus 132 --------~dv~~~~~gg~---~~~~g~g~~~~~l~~~~~~~~vl~~p~~~ 171 (271)
T 2v8p_A 132 --------ADAPFFLLGKS---AIGRGKGEVLEPVETEISGKITLVIPQVS 171 (271)
T ss_dssp --------TTTGGGGTCSE---EEEETTTTEEEECCCCCCSEEEEEECSSC
T ss_pred --------CCHHHHhcCCe---EEEEEcCCEEEEccCCCCcEEEEEeCCCC
Confidence 28889999984 34444555567777544899999999874
No 22
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.84 E-value=1.9e-20 Score=177.07 Aligned_cols=106 Identities=17% Similarity=0.133 Sum_probs=85.5
Q ss_pred chhhhHHHHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhC
Q 016879 9 CFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIG 88 (381)
Q Consensus 9 ~~yv~~~~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g 88 (381)
.|++ ..+++.+.+.... ..|++++++++||.++|||||||+++|++.|++++++.++ +++++|.++|
T Consensus 57 ~n~v---~~a~~~~~~~~g~---~~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g---- 123 (275)
T 1uek_A 57 ENLA---YRAASLYLEAAGQ---PGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLG---- 123 (275)
T ss_dssp GSHH---HHHHHHHHHHTTC---CCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHC----
T ss_pred ccHH---HHHHHHHHHHhCC---CCCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhC----
Confidence 4777 5556666554221 3699999999999999999999999999999999999988 8999999885
Q ss_pred CCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcc
Q 016879 89 TQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAE 136 (381)
Q Consensus 89 ~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~ 136 (381)
.|+.++++||. .+...+...+++++ ++++.+++++|+++
T Consensus 124 -----~dv~~~~~Gg~---~~~~g~g~~~~~l~-~~~~~~vl~~p~~~ 162 (275)
T 1uek_A 124 -----ADVPFFLLGRG---AEARGVGERLKPLA-LPPVPAVVFFPGLR 162 (275)
T ss_dssp -----TTHHHHHHCSE---EEEETTTTEEEEEC-CCCEEEEEEECCCC
T ss_pred -----CChHHHhcCCe---EEEEccCceeEEcc-CCCcEEEEEeCCCC
Confidence 39999999984 44555555667777 56899999999874
No 23
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.77 E-value=5.9e-17 Score=161.88 Aligned_cols=204 Identities=14% Similarity=0.186 Sum_probs=138.3
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEee-
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID- 111 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~- 111 (381)
.|++|.+.++||.++|||||||.++|++.|+++++|+++++++|+++|.+++ + +...+++||. ...+
T Consensus 122 ~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~--------G-s~~~sl~GG~---v~~~~ 189 (416)
T 1fi4_A 122 WKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGS--------G-SACRSLFGGY---VAWEM 189 (416)
T ss_dssp SCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH--------G-GGGGGGSSSE---EEEEC
T ss_pred CcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccC--------C-chheEeeCCc---EEEec
Confidence 6899999999999999999999999999999999999999999999998874 1 4567899994 2332
Q ss_pred cC-----CCeeEEeecC---CCcE--EEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchh
Q 016879 112 FN-----PIRTTDVQLP---AGGT--FVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSD 181 (381)
Q Consensus 112 ~~-----~~~~~~i~~~---~~~~--~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~ 181 (381)
.. .....+++.+ +++. +++++++.. .......|+.+
T Consensus 190 G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~---~~sst~~~~~~------------------------------- 235 (416)
T 1fi4_A 190 GKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKK---DVSSTQGMQLT------------------------------- 235 (416)
T ss_dssp CSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSC---CCCHHHHHHHH-------------------------------
T ss_pred CCcCCCCCceeEEecCccCCcccEEEEEEECCCCC---CcCCHHHHHHH-------------------------------
Confidence 21 1234555532 3666 344444321 11100001000
Q ss_pred hhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHH
Q 016879 182 VEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH 261 (381)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~ 261 (381)
++.. + ....++.++. ..|+.
T Consensus 236 ------------------------~~~~----------------~------------------~~~~~~~~i~--~~~~~ 255 (416)
T 1fi4_A 236 ------------------------VATS----------------E------------------LFKERIEHVV--PKRFE 255 (416)
T ss_dssp ------------------------HHHC----------------S------------------HHHHHHHTHH--HHHHH
T ss_pred ------------------------hhcC----------------H------------------hHHHHHHHHH--HHHHH
Confidence 0000 0 0011122211 24677
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhHHhhhhcc-------CCChHHHHHHHHHHh----CC-CcEEEEcCCCCcceEE
Q 016879 262 AFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYE-------CSCPELEELVNVCRN----NG-ALGARLTGAGWGGCVV 329 (381)
Q Consensus 262 ~~~~al~~~~~~~~d~~~lg~lm~~sh~~lr~~~~-------vs~peld~l~~~a~~----~G-a~Gak~sGaG~GG~vi 329 (381)
.++.+|.++ |++.||++|.++|..+...+- ...|...++++.+.+ .| +.++.+||+| ++++
T Consensus 256 ~l~~AL~~g-----D~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~~~a~~SGaG--Ptv~ 328 (416)
T 1fi4_A 256 VMRKAIVEK-----DFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAG--PNAV 328 (416)
T ss_dssp HHHHHHHTT-----CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEEECSS--SCEE
T ss_pred HHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCceEEEEecCC--CcEE
Confidence 788999886 599999999877766655332 235677888876644 38 7888999888 9999
Q ss_pred EEEeCCcHHHHHHHHHHHHH
Q 016879 330 ALVKESIDSQFILNLKEQFY 349 (381)
Q Consensus 330 ~l~~~~~~~~~~~~l~~~~~ 349 (381)
+|++++.++++.+++++.|.
T Consensus 329 al~~~~~~~~v~~~l~~~~~ 348 (416)
T 1fi4_A 329 LYYLAENESKLFAFIYKLFG 348 (416)
T ss_dssp EEEEGGGHHHHHHHHHHHHT
T ss_pred EEECHHHHHHHHHHHHHhcc
Confidence 99988778899999988775
No 24
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.75 E-value=3.3e-18 Score=162.53 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=87.8
Q ss_pred chhhhHHHHHHHHHHHc-------CCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 016879 9 CFVFFRYKAFYEYVKAK-------GLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTC 81 (381)
Q Consensus 9 ~~yv~~~~g~~~~l~~~-------~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~ 81 (381)
.|++ ..++..+.+. +. ..|++++++++||.++|||||||+++|++.|++++++.++++++++++|.
T Consensus 64 ~nlv---~~a~~~~~~~~~~~~~~g~----~~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~ 136 (283)
T 2ww4_A 64 DNLI---VRAARLLMKTAADSGRLPT----GSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGL 136 (283)
T ss_dssp GSHH---HHHHHHHHHHHHHTTCSCT----TCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred ccHH---HHHHHHHHHHhhhhcccCC----CCceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Confidence 6888 4455555433 32 36999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCcchhhhhhhccCCceEEeecCCCeeEEeecCCCcEEEEEeCCcch
Q 016879 82 ECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAES 137 (381)
Q Consensus 82 ~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~~~~~~~~i~~~~~~~~ll~~s~~~~ 137 (381)
++| .|..++++||. .+.......++++++| ++.+++++|+++.
T Consensus 137 ~~e---------~dv~~~~~gg~---~~~~g~g~~~~~l~~~-~~~~vl~~p~~~~ 179 (283)
T 2ww4_A 137 TLG---------ADVPVFVRGHA---AFAEGVGEILTPVDPP-EKWYLVAHPGVSI 179 (283)
T ss_dssp TTC---------TTHHHHHHTBC---EEEETTTTEEEECCCC-CCEEEEECCSCCC
T ss_pred HhC---------CCHHHhhcCCe---EEEEecCccceEcCCC-CcEEEEEeCCCCC
Confidence 987 29999999984 3455555556677766 7889999998743
No 25
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.71 E-value=1.3e-15 Score=146.68 Aligned_cols=202 Identities=15% Similarity=0.112 Sum_probs=134.7
Q ss_pred CCCeEEEEEcCCCCCCCCChhHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCc
Q 016879 32 PVGLDILVDGTVPTGSGLSSSTAFVCSST----VALMAAFGVEV-PKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGF 106 (381)
Q Consensus 32 ~~g~~i~i~s~IP~g~GLGSSaA~~va~~----~al~~~~g~~l-s~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~ 106 (381)
..|++|.+.++||.++|||||||.+||++ .|+++++|+++ +++++.++|.+++ | +...|+|||.
T Consensus 90 ~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gs-------G--saa~si~GG~-- 158 (323)
T 3lto_A 90 VGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGS-------G--SSCRSFYAPW-- 158 (323)
T ss_dssp CCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTC-------G--GGGGGGSCSE--
T ss_pred CCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-------C--CcchhhhCCE--
Confidence 46999999999999999999999999999 99999999999 9999999997663 1 4466899994
Q ss_pred eEEeecCCCeeEEee-cCCCcEEEEEe-CCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhh
Q 016879 107 AELIDFNPIRTTDVQ-LPAGGTFVVAH-SLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 184 (381)
Q Consensus 107 ~~~~~~~~~~~~~i~-~~~~~~~ll~~-s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~ 184 (381)
+..... ..+++. .++++.++++. +..+. ..++. .+.+.
T Consensus 159 -v~~~~g--~~~~l~~~~~~l~~~v~vi~~~~~-~vsT~------------~~~~~------------------------ 198 (323)
T 3lto_A 159 -ALWTGD--KVSAIDLPYKDLLHQVIVISSQEK-EIPSR------------VAHKL------------------------ 198 (323)
T ss_dssp -EEEETT--EEEECCCSCCSCEEEEEECCCCTT-CCCHH------------HHHHH------------------------
T ss_pred -EEEecC--cEEEccCCCCCCeEEEEEECCCCC-CCCCH------------HHHhh------------------------
Confidence 222211 334442 22356654333 32210 11110 00000
Q ss_pred hhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHH
Q 016879 185 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 264 (381)
Q Consensus 185 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~ 264 (381)
++..++- + .+... ...++..++
T Consensus 199 ---------------------l~~~~~~-~---------------------------------~~~~~---~~~~~~~l~ 220 (323)
T 3lto_A 199 ---------------------VKTSPFY-E---------------------------------TRSER---AEANLKLLL 220 (323)
T ss_dssp ---------------------GGGSTTT-T---------------------------------THHHH---HHHHHHHHH
T ss_pred ---------------------cccChhH-H---------------------------------HHHHH---hHHHHHHHH
Confidence 0000000 0 00000 124677788
Q ss_pred HHHhcCCCchHHHHHHHHHHHH----HhHHhhhh--c-cCCChHHHHHHHHHHh----CCCcEEEEcCCCCcceEEEEEe
Q 016879 265 DTVSSNLSEEDKLKKLGDLMND----SHHSCSVL--Y-ECSCPELEELVNVCRN----NGALGARLTGAGWGGCVVALVK 333 (381)
Q Consensus 265 ~al~~~~~~~~d~~~lg~lm~~----sh~~lr~~--~-~vs~peld~l~~~a~~----~Ga~Gak~sGaG~GG~vi~l~~ 333 (381)
.+|.++ |++.|+++|.. -|..+++. | -.-.|+..++++.+.+ .|++++.++||| +++++|++
T Consensus 221 ~AL~~g-----D~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAG--Pnv~~l~~ 293 (323)
T 3lto_A 221 NAFENK-----DWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAG--PNVHLLYR 293 (323)
T ss_dssp HHHHTT-----CHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSS--SCEEEEEC
T ss_pred HHHHcC-----CHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCC--CCeEEEEe
Confidence 999986 59999998753 45544442 1 1247887777777754 689999999999 88999999
Q ss_pred CCcHHHHHHHHHHHHH
Q 016879 334 ESIDSQFILNLKEQFY 349 (381)
Q Consensus 334 ~~~~~~~~~~l~~~~~ 349 (381)
++..+++.+.+++.+.
T Consensus 294 ~~~~~~v~~~l~~~~~ 309 (323)
T 3lto_A 294 SDQTDLARQFKSDHLV 309 (323)
T ss_dssp GGGHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHhH
Confidence 8899999999977664
No 26
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.71 E-value=4.3e-15 Score=146.73 Aligned_cols=218 Identities=13% Similarity=0.149 Sum_probs=137.5
Q ss_pred HHHHHHHHHcCCCCCCCCCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcch
Q 016879 16 KAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMD 95 (381)
Q Consensus 16 ~g~~~~l~~~~~~~~~~~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D 95 (381)
..+++.+.+.........|++|+++++||.++|||||||.++|++.|+++++|++ ++++++|.+++ -|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~---------Gs 146 (380)
T 2hke_A 79 QSMLLHLRSTCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGS---------GS 146 (380)
T ss_dssp HHHHHHHHTSSCHHHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHC---------GG
T ss_pred HHHHHHHHHHhcccCCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcC---------cc
Confidence 4556666554210000368999999999999999999999999999999999976 88999998764 15
Q ss_pred hhhhhhccCCceEEeec-C-----CCeeEEeecC---CCcEEEEE--eCCcchhhhhhcccchhhHHHHHHHHHHHHHHH
Q 016879 96 QAISIMAKSGFAELIDF-N-----PIRTTDVQLP---AGGTFVVA--HSLAESLKAITAASNYNNRVVECRLTAIVLAIK 164 (381)
Q Consensus 96 ~~~~~~Gg~~~~~~~~~-~-----~~~~~~i~~~---~~~~~ll~--~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~ 164 (381)
...|+|||+ ..... . .....+++.+ +++.++++ ++... ...+ + .+. .+++
T Consensus 147 va~s~~GG~---v~~~~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~--~~ss-------t-~~~---r~~~--- 207 (380)
T 2hke_A 147 ACRSAFGGF---VIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQK--DVSS-------T-KGM---QQSL--- 207 (380)
T ss_dssp GGGGGSSSE---EEEECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSC--CCCH-------H-HHH---HHHH---
T ss_pred eeeehhCCe---EEEecCCCCCCCcceEEeccCcccCCcceEEEEEecCCCC--CCCC-------H-HHH---HHHH---
Confidence 677899994 23322 1 1234566543 35554443 32211 0000 0 000 0000
Q ss_pred hCCCchhhhhhcccchhhhhhhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhH
Q 016879 165 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 244 (381)
Q Consensus 165 ~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+..+ ..+
T Consensus 208 ------------------------------------------~~~~-~~~------------------------------ 214 (380)
T 2hke_A 208 ------------------------------------------KTSP-LMK------------------------------ 214 (380)
T ss_dssp ------------------------------------------HHCT-THH------------------------------
T ss_pred ------------------------------------------hcCh-hHH------------------------------
Confidence 0000 000
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHHhcCCCchHHHHHHHHHHHHH----hHHhhhhc---cCCChHHHHHHHHHHhC----C
Q 016879 245 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDS----HHSCSVLY---ECSCPELEELVNVCRNN----G 313 (381)
Q Consensus 245 ~~~~r~~~~~~E~~r~~~~~~al~~~~~~~~d~~~lg~lm~~s----h~~lr~~~---~vs~peld~l~~~a~~~----G 313 (381)
.++.++ ...++..++.+|.++ |++.|+++|.++ |...++.+ ....|...++++.+.+. |
T Consensus 215 ---~~~~~~--~~~~~~~l~~Al~~~-----D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~G 284 (380)
T 2hke_A 215 ---KRISET--VPERMKIASRAIKAR-----DFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKG 284 (380)
T ss_dssp ---HHHHTH--HHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHH--HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcC
Confidence 001110 124666788899876 599999999654 43333321 23578888888886553 9
Q ss_pred -CcEEEEcCCCCcceEEEEEeCCcHHHHHHHHHHHHH
Q 016879 314 -ALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 349 (381)
Q Consensus 314 -a~Gak~sGaG~GG~vi~l~~~~~~~~~~~~l~~~~~ 349 (381)
+.++.+||+| +++++|++++.++++.+++++.|.
T Consensus 285 a~~~a~~SGaG--Ptv~~l~~~~~~~~v~~~l~~~~~ 319 (380)
T 2hke_A 285 RTALAYTFDAG--ANCFLFVLKEDLPEAVAMLMEHFP 319 (380)
T ss_dssp SCCEEEECCSS--SCEEEEEEGGGHHHHHHHHHHHSC
T ss_pred CcceEEEECCC--CcEEEEECHHHHHHHHHHHHHhcc
Confidence 8889999887 999999987778889999987764
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.62 E-value=4.7e-14 Score=139.00 Aligned_cols=205 Identities=14% Similarity=0.172 Sum_probs=134.9
Q ss_pred CCeEEEEEcCCCCCCCCChhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhhhhCCCCCcchhhhhhhccCCceEEeec
Q 016879 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 112 (381)
Q Consensus 33 ~g~~i~i~s~IP~g~GLGSSaA~~va~~~al~~~~g~~ls~~el~~la~~~E~~~g~~~g~~D~~~~~~Gg~~~~~~~~~ 112 (381)
.+++|.+.++||.++|||||||.++|++.|+++++++ .+++.++|.+++ | +...|+|||. +....+
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~s-------G--s~~~s~~GG~--v~w~~~ 187 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGS-------G--SACRSLYGGF--VEWQMG 187 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHC-------G--GGGGGGSSSE--EEECCC
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhC-------C--CcchHhhCCE--EEEEec
Confidence 5899999999999999999999999999999999997 478888887773 1 4466899994 222222
Q ss_pred C-----CCeeEEeecC---CCcEEEEEeCCcchhhhhhcccchhhHHHHHHHHHHHHHHHhCCCchhhhhhcccchhhhh
Q 016879 113 N-----PIRTTDVQLP---AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 184 (381)
Q Consensus 113 ~-----~~~~~~i~~~---~~~~~ll~~s~~~~~~~~~~~~~y~~r~~e~~~a~~~l~~~~~~~~~~~~~~~~~L~~~~~ 184 (381)
. .....+++.+ +++.++++.+.....+.++ | . .+ +
T Consensus 188 ~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsS-------T-----~---~m------------------r---- 230 (414)
T 3f0n_A 188 EQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGS-------T-----V---GM------------------Q---- 230 (414)
T ss_dssp SCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCH-------H-----H---HH------------------H----
T ss_pred cCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCc-------h-----H---HH------------------H----
Confidence 1 1223455532 3677766653221111111 0 0 00 0
Q ss_pred hhhhhhcCCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCCchhHHhhhhhHHHHHHHHHHHhHHHhHHHHH
Q 016879 185 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 264 (381)
Q Consensus 185 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~E~~r~~~~~ 264 (381)
..++.. .+ .-.++.++ -..|+..++
T Consensus 231 -------------------~~l~ts----------------~~------------------~~~~v~~~--~~~~~~~l~ 255 (414)
T 3f0n_A 231 -------------------TSVETS----------------TL------------------LKFRAESV--VPERMKEMT 255 (414)
T ss_dssp -------------------HHHHHC----------------HH------------------HHHHHHHT--HHHHHHHHH
T ss_pred -------------------hhcccC----------------cc------------------HHHHHHHH--HHHHHHHHH
Confidence 000000 00 00111110 125777889
Q ss_pred HHHhcCCCchHHHHHHHHHHH----HHhHHhhhh--c-cCCChHHHHHHHHHHhC-----CCcEEEEcCCCCcceEEEEE
Q 016879 265 DTVSSNLSEEDKLKKLGDLMN----DSHHSCSVL--Y-ECSCPELEELVNVCRNN-----GALGARLTGAGWGGCVVALV 332 (381)
Q Consensus 265 ~al~~~~~~~~d~~~lg~lm~----~sh~~lr~~--~-~vs~peld~l~~~a~~~-----Ga~Gak~sGaG~GG~vi~l~ 332 (381)
.+|.++ |++.||++|. .-|..+++- + -.-+|+..++++.+.+. |++++.++||| +++++|+
T Consensus 256 ~AL~~g-----D~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAG--Pnv~vl~ 328 (414)
T 3f0n_A 256 RCIQEQ-----DFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAG--PNAVIFT 328 (414)
T ss_dssp HHHHTT-----CHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSS--SCEEEEE
T ss_pred HHHHcC-----CHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCC--CCEEEEE
Confidence 999986 5999999865 356666652 1 12478888888877663 89999999999 9999999
Q ss_pred eCCcHHHHHHHHHHHHHh
Q 016879 333 KESIDSQFILNLKEQFYQ 350 (381)
Q Consensus 333 ~~~~~~~~~~~l~~~~~~ 350 (381)
++++.+++.+.|++.|..
T Consensus 329 ~~~~~~~v~~~l~~~f~~ 346 (414)
T 3f0n_A 329 LEDTVAEFVAAVRHSFPP 346 (414)
T ss_dssp EHHHHHHHHHHHHHHSCC
T ss_pred ecccHHHHHHHHHHhcCC
Confidence 988999999999876654
No 28
>3m05_A Uncharacterized protein PEPE_1480; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 3.15A {Pediococcus pentosaceus}
Probab=62.07 E-value=18 Score=28.73 Aligned_cols=53 Identities=9% Similarity=-0.001 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHhCCCcEEEEcCCCCcc----e-EEEEEeCCcHHHHHHHHHHHHHhc
Q 016879 299 CPELEELVNVCRNNGALGARLTGAGWGG----C-VVALVKESIDSQFILNLKEQFYQS 351 (381)
Q Consensus 299 ~peld~l~~~a~~~Ga~Gak~sGaG~GG----~-vi~l~~~~~~~~~~~~l~~~~~~~ 351 (381)
...+|.+.+...+.|..|.+++-.|++| . +...++++.++++++.|.+.-+..
T Consensus 15 p~kld~V~~AL~~~G~~~t~v~~~gGf~r~g~~~leivV~De~Vd~vi~~I~~~a~TR 72 (114)
T 3m05_A 15 DKDANYLSDQFIDQNVRATKLSTTGGFLQSGNTTFMIGIEEERVPEVLEIIKKASHTR 72 (114)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeccccccCCEEEEEEEcHHHHHHHHHHHHHHcCCc
Confidence 4568888888888999998887665533 3 445567789999999998876543
No 29
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=59.39 E-value=25 Score=27.33 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=37.2
Q ss_pred CChHHHHHHHHHHhCCCcEEEE---cCCCC--cc-----------------eEEEEEeCCcHHHHHHHHHHHHHhc
Q 016879 298 SCPELEELVNVCRNNGALGARL---TGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQS 351 (381)
Q Consensus 298 s~peld~l~~~a~~~Ga~Gak~---sGaG~--GG-----------------~vi~l~~~~~~~~~~~~l~~~~~~~ 351 (381)
....++.+.+.+.+.|+.|..+ .|-|- |. -+..+++++.++++++.+.+..+..
T Consensus 9 ~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~tg 84 (112)
T 2eg2_A 9 KPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKTAQTG 84 (112)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGGGHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEEeEeecccCCCceeeeccccccccccEEEEEEEEcHHHHHHHHHHHHHHhcCC
Confidence 3566888988888888777433 33332 11 3667777889999999999987643
No 30
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=56.09 E-value=24 Score=27.63 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=39.0
Q ss_pred CChHHHHHHHHHHhCCCcEEE---EcCCCC--cc-----------------eEEEEEeCCcHHHHHHHHHHHHHhc
Q 016879 298 SCPELEELVNVCRNNGALGAR---LTGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQS 351 (381)
Q Consensus 298 s~peld~l~~~a~~~Ga~Gak---~sGaG~--GG-----------------~vi~l~~~~~~~~~~~~l~~~~~~~ 351 (381)
....++.+.+.+.+.|+.|.. ..|-|- |. .+..+++++.++.+++++.+..+..
T Consensus 9 ~~~~~~~V~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg 84 (116)
T 1vfj_A 9 RPEKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEPFVKPTVEAILKAARTG 84 (116)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGGGHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEeeEeEcCccCCccceeceeeeeccCceEEEEEEEcHHHHHHHHHHHHHHhcCC
Confidence 356688898888888877643 333332 12 5788888899999999999987543
No 31
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=54.72 E-value=21 Score=28.17 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=38.8
Q ss_pred CChHHHHHHHHHHhCCCcEEEE---cCCCC--cce-----------------EEEEEeCCcHHHHHHHHHHHHHhc
Q 016879 298 SCPELEELVNVCRNNGALGARL---TGAGW--GGC-----------------VVALVKESIDSQFILNLKEQFYQS 351 (381)
Q Consensus 298 s~peld~l~~~a~~~Ga~Gak~---sGaG~--GG~-----------------vi~l~~~~~~~~~~~~l~~~~~~~ 351 (381)
....++.+.+.+.+.|+.|..+ .|-|- |-. +..+++++.++++++.+.+..+..
T Consensus 11 ~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~G~~~~~~~~pK~~ieivv~de~v~~vv~~I~~~~~tg 86 (119)
T 2j9c_A 11 RPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEEDVDNVIDIICENARTG 86 (119)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGGGHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEeecccCCccceeeccccccccCcEEEEEEEEcHHHHHHHHHHHHHHhcCC
Confidence 4567889999999988877533 33332 111 677788899999999999987543
No 32
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=53.67 E-value=38 Score=26.28 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=38.2
Q ss_pred CChHHHHHHHHHHhCCCcEEE---EcCCCC-cc------------------eEEEEEeCCcHHHHHHHHHHHHHhcc
Q 016879 298 SCPELEELVNVCRNNGALGAR---LTGAGW-GG------------------CVVALVKESIDSQFILNLKEQFYQSR 352 (381)
Q Consensus 298 s~peld~l~~~a~~~Ga~Gak---~sGaG~-GG------------------~vi~l~~~~~~~~~~~~l~~~~~~~~ 352 (381)
....++.+.+.+.+.|+.|.. ..|-|- .| -+..+++++.++++++.+.+..+...
T Consensus 11 r~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~ 87 (114)
T 3bzq_A 11 KPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAARTGK 87 (114)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTTHHHHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEEeccccCcccceeccccccccccEEEEEEEECHHHHHHHHHHHHHHhcCCC
Confidence 356688888888888877643 333332 12 36777788999999999999876433
No 33
>2gw8_A PII signal transduction protein; transcriptional regulation, neisse structural genomics, oxford protein production facility; 1.85A {Neisseria meningitidis}
Probab=49.12 E-value=41 Score=26.17 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHhCCCcEEEE---cCCCC--cc-----------------eEEEEEeCCcHHHHHHHHHHHHHhc
Q 016879 298 SCPELEELVNVCRNNGALGARL---TGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQS 351 (381)
Q Consensus 298 s~peld~l~~~a~~~Ga~Gak~---sGaG~--GG-----------------~vi~l~~~~~~~~~~~~l~~~~~~~ 351 (381)
....++.+.+.+.+.|+.|..+ .|-|- |. -+..+++++.++++++.+.+..+..
T Consensus 11 ~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~K~~ieivv~d~~v~~vv~~I~~~~~tg 86 (114)
T 2gw8_A 11 KPFKLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADDAVERAIDVIVEVARSG 86 (114)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGGGHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEeecccCCCccceecccccccccceEEEEEEEcHHHHHHHHHHHHHHhCCC
Confidence 3566888988888888777433 33332 21 3455567789999999999987643
No 34
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=48.99 E-value=58 Score=25.37 Aligned_cols=55 Identities=15% Similarity=0.174 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHhCCCcEE---EEcCCCCcc-------------------eEEEEEeCCcHHHHHHHHHHHHHhcc
Q 016879 298 SCPELEELVNVCRNNGALGA---RLTGAGWGG-------------------CVVALVKESIDSQFILNLKEQFYQSR 352 (381)
Q Consensus 298 s~peld~l~~~a~~~Ga~Ga---k~sGaG~GG-------------------~vi~l~~~~~~~~~~~~l~~~~~~~~ 352 (381)
....++.+.+.+.+.|+-|. ...|-|-.. -+..+|+++.++++++.+.+..+...
T Consensus 13 r~~~~~~v~~AL~~~G~~g~Tv~~v~G~G~~~~~~~~~~G~~~~~~~~~k~~ieivv~de~v~~vv~~I~~~~~tg~ 89 (116)
T 2ns1_B 13 KPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGK 89 (116)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEeEcCcCCCccceecceeecccccEEEEEEEEcHHHHHHHHHHHHHHhcCCC
Confidence 45678888888888887663 344444311 34556678899999999999876543
No 35
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=46.07 E-value=47 Score=25.64 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=37.2
Q ss_pred CChHHHHHHHHHHhCCCcEEEE---cCCCC-cc------------------eEEEEEeCCcHHHHHHHHHHHHHhcc
Q 016879 298 SCPELEELVNVCRNNGALGARL---TGAGW-GG------------------CVVALVKESIDSQFILNLKEQFYQSR 352 (381)
Q Consensus 298 s~peld~l~~~a~~~Ga~Gak~---sGaG~-GG------------------~vi~l~~~~~~~~~~~~l~~~~~~~~ 352 (381)
....++.+.+.+.+.|+.|..+ .|-|- +| -+..+++++.++++++.+.+..+...
T Consensus 9 ~~~~~~~v~~aL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~~v~~vv~~I~~~~~tg~ 85 (112)
T 1hwu_A 9 KPFKLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDKVVEQAVDAIIKAARTGK 85 (112)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccccccccccceEEEEEEEcHHHHHHHHHHHHHHhcCCC
Confidence 3566888988888888777433 34342 12 34455677889999999999876433
No 36
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=45.32 E-value=51 Score=26.71 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=38.5
Q ss_pred CChHHHHHHHHHHhCCCcEEEE---cCCCCc-c-------------------eEEEEEeCCcHHHHHHHHHHHHHhcc
Q 016879 298 SCPELEELVNVCRNNGALGARL---TGAGWG-G-------------------CVVALVKESIDSQFILNLKEQFYQSR 352 (381)
Q Consensus 298 s~peld~l~~~a~~~Ga~Gak~---sGaG~G-G-------------------~vi~l~~~~~~~~~~~~l~~~~~~~~ 352 (381)
....++.+.+.+.+.|+.|..+ .|-|-. | -+..+++++.++++++.+.+..+...
T Consensus 21 r~~k~~~V~~AL~~~G~~G~Tv~~v~G~G~q~g~~~~~rG~~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~~~tg~ 98 (135)
T 2o66_A 21 RPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGARTGE 98 (135)
T ss_dssp CGGGHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGGGHHHHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHHHHCCCceEEEEeeEeEeccCCCceeEcceeeeccccCceEEEEEEEcHHHHHHHHHHHHHHhCCCC
Confidence 3566788888888888877433 444431 1 36677788899999999999876543
No 37
>3t9z_A GLNK3, nitrogen regulatory protein P-II (GLNB-3); PII-family, AMT3, signaling protein; HET: FLC; 1.82A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ta0_A* 3ta1_A* 3ta2_A* 3o8w_A
Probab=42.38 E-value=48 Score=26.19 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHhCCCcEEEE---cCCCC-cc------------------eEEEEEeCCcHHHHHHHHHHHHHhc
Q 016879 298 SCPELEELVNVCRNNGALGARL---TGAGW-GG------------------CVVALVKESIDSQFILNLKEQFYQS 351 (381)
Q Consensus 298 s~peld~l~~~a~~~Ga~Gak~---sGaG~-GG------------------~vi~l~~~~~~~~~~~~l~~~~~~~ 351 (381)
-...++.+.+...+.|+.|..+ .|-|- +| -+..+|+++.++.+++.+.+.-+..
T Consensus 9 rp~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~~ieivV~de~ve~Vv~~I~~~a~TG 84 (118)
T 3t9z_A 9 RPEKLECVKKALEERGFVGMTVTEVKGRGEQKGIRLQFRGREVEVDLLQKTKVEVVVSDDAVDEVVEAIVSSARTG 84 (118)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEEEEC-----------------CEEEEEEEEEECGGGHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHCCCceEEEEeeEeecCcCCCccccccceeeecccceEEEEEEEChHHHHHHHHHHHHHhcCC
Confidence 3556889998888888877443 34443 12 2455667789999999999876543
No 38
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} SCOP: d.58.5.0 PDB: 3ncp_A* 3ncr_A*
Probab=40.97 E-value=49 Score=26.16 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=38.3
Q ss_pred CChHHHHHHHHHHhCCCcEE---EEcCCCC--cc-----------------eEEEEEeCCcHHHHHHHHHHHHHhc
Q 016879 298 SCPELEELVNVCRNNGALGA---RLTGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQS 351 (381)
Q Consensus 298 s~peld~l~~~a~~~Ga~Ga---k~sGaG~--GG-----------------~vi~l~~~~~~~~~~~~l~~~~~~~ 351 (381)
-...++.+.+...+.|+.|. ...|-|- |. -+..+|+++.++.+++.+.+.-+..
T Consensus 9 rp~kl~~Vk~AL~~~G~~g~Tv~~V~G~G~qkg~~~~yrG~~~~~~~~pK~kieivV~de~ve~vv~~I~~~a~TG 84 (119)
T 3ncq_A 9 RAEKFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDDAVEEVIGLIVNSAFTG 84 (119)
T ss_dssp CTTTHHHHHHHHHHTTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEeeEeEcCccCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCC
Confidence 35678899998888888774 3445443 21 2556667789999999999876543
No 39
>4aff_A Nitrogen regulatory protein P-II; signaling protein; HET: ATP FLC; 1.05A {Synechococcus elongatus} SCOP: d.58.5.1 PDB: 2xun_A* 2xul_A* 2xzw_A* 2xbp_A* 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 3n5b_A* 1ul3_A
Probab=35.39 E-value=1.3e+02 Score=23.55 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHhCCCcEE---EEcCCCCc-c------------------eEEEEEeCCcHHHHHHHHHHHHHhcccCCC
Q 016879 299 CPELEELVNVCRNNGALGA---RLTGAGWG-G------------------CVVALVKESIDSQFILNLKEQFYQSRIDRG 356 (381)
Q Consensus 299 ~peld~l~~~a~~~Ga~Ga---k~sGaG~G-G------------------~vi~l~~~~~~~~~~~~l~~~~~~~~~~~~ 356 (381)
...++.+.+...+.|+.|. ...|-|-- | -+...|+++.++.+++.+.+.-+...+ |
T Consensus 10 p~kl~~vk~AL~~~G~~g~Tv~~V~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~ve~vv~~I~~~a~Tg~~--G 87 (116)
T 4aff_A 10 PFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEN--G 87 (116)
T ss_dssp GGGHHHHHHHHHHTTCCCCEEEEEEECCCCC------CCCSSCCCCEEEEEEEEEECGGGHHHHHHHHHHHHCCSST--T
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeEeEcccCCCccccccceeeecccceEEEEEEEcHHHHHHHHHHHHHHhcCCCC--C
Confidence 4568888888888887773 34454431 2 245556778999999999887654333 2
Q ss_pred cccCCCCcceEEEeeCCCce
Q 016879 357 VINNNDLGLYVFASKPSSGA 376 (381)
Q Consensus 357 ~~~~~~~~~~~~~~~p~~Ga 376 (381)
+..+|++...+-.
T Consensus 88 -------DGkIFV~~Ve~~v 100 (116)
T 4aff_A 88 -------DGKIFVSPVDQTI 100 (116)
T ss_dssp -------CEEEEEEECSCCB
T ss_pred -------CeEEEEEEhHHeE
Confidence 3456666544433
No 40
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=31.46 E-value=57 Score=25.78 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHhCCCcEEE---EcCCCCc-c----------eEEEEEeCCcHHHHHHHHHHHHHh
Q 016879 298 SCPELEELVNVCRNNGALGAR---LTGAGWG-G----------CVVALVKESIDSQFILNLKEQFYQ 350 (381)
Q Consensus 298 s~peld~l~~~a~~~Ga~Gak---~sGaG~G-G----------~vi~l~~~~~~~~~~~~l~~~~~~ 350 (381)
..+.++.+++.+.+.|+-|.- ..|-|-. | -+..+++++.++++++.|.+..+.
T Consensus 33 r~~k~e~V~~aL~~~Gi~G~TV~~V~G~G~q~~~t~~~~g~kv~IeiVv~de~ve~vv~~I~~~~~t 99 (119)
T 2cz4_A 33 ESLLEKRLVEEVKRLGAKGYTITPARGEGSRGIRSVDWEGQNIRLETIVSEEVALRILQRLQEEYFP 99 (119)
T ss_dssp EGGGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCSCSTTCEEEEEEEECHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHhCCCCcEEEcCCEEecCCCCccccccCCCEEEEEEECHHHHHHHHHHHHHHhcC
Confidence 467789999999998877743 3333321 1 355666678899999999876654
No 41
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=22.90 E-value=1.4e+02 Score=22.95 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=37.7
Q ss_pred CChHHHHHHHHHHhCCCcEEE---EcCCCC--cc-----------------eEEEEEeCCcHHHHHHHHHHHHHhc
Q 016879 298 SCPELEELVNVCRNNGALGAR---LTGAGW--GG-----------------CVVALVKESIDSQFILNLKEQFYQS 351 (381)
Q Consensus 298 s~peld~l~~~a~~~Ga~Gak---~sGaG~--GG-----------------~vi~l~~~~~~~~~~~~l~~~~~~~ 351 (381)
-...++.+.+...+.|+.|.. ..|-|- |. -+..+|+++.++.+++.+.+.-+..
T Consensus 9 r~~kl~~vk~AL~~~G~~g~Tv~~v~G~G~q~g~~~~yrG~~~~~~~~pK~kieivV~d~~v~~vv~~I~~~~~tg 84 (112)
T 3mhy_A 9 KPFKLDEVREALTSLGIQGLTVSEVKGFGRQKGQTEIYRGAEYSVSFLPKVKVEVAVSDDQYEQVVEAIQKAANTG 84 (112)
T ss_dssp CGGGHHHHHHHHHHHTCCCEEEEEEEEECTTTTCC---------CCCEEEEEEEEEECTTTHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEEEEeEccccCCcceeccceeeecccceEEEEEEEchHHHHHHHHHHHHHhcCC
Confidence 345688888888888877743 345553 22 2456677889999999999876543
No 42
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=21.90 E-value=83 Score=24.66 Aligned_cols=50 Identities=24% Similarity=0.277 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHhCCCcEEEE----cCCCCcc---------------eEEEEEe-CCcHHHHHHHHHHHH
Q 016879 299 CPELEELVNVCRNNGALGARL----TGAGWGG---------------CVVALVK-ESIDSQFILNLKEQF 348 (381)
Q Consensus 299 ~peld~l~~~a~~~Ga~Gak~----sGaG~GG---------------~vi~l~~-~~~~~~~~~~l~~~~ 348 (381)
-|-.++|++.+++.|+-|+-+ .|-|..| -++.++. +++++.+...+++-+
T Consensus 29 ~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~v 98 (114)
T 1o51_A 29 KPLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNID 98 (114)
T ss_dssp EEHHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTCC
T ss_pred eEHHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHHh
Confidence 467799999999988888655 3333333 2344443 356777777775543
Done!