RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 016879
(381 letters)
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 685 bits (1769), Expect = 0.0
Identities = 283/377 (75%), Positives = 325/377 (86%), Gaps = 1/377 (0%)
Query: 6 HLWC-FVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALM 64
H W + YK +E++K+KG+DVGPPVGLD++VDGTVPTGSGLSSS A VCS+ +A+M
Sbjct: 120 HKWGNYFICGYKGVFEFLKSKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIM 179
Query: 65 AAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPA 124
AA G+ KKE+AQ TC+CE+ IGTQSGGMDQAISIMA+ G A+LIDFNP+R TDVQLPA
Sbjct: 180 AALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDFNPVRATDVQLPA 239
Query: 125 GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 184
GGTFV+A+SLAES KA+TAA+NYNNRVVECRL AIVLA+KLGM +EAISKVKTLSDVEG
Sbjct: 240 GGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEG 299
Query: 185 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 244
LCV+FA +GSSDP AVKE L + PYTA +IE+I E LTSIF NS +SL VL AAK +
Sbjct: 300 LCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHF 359
Query: 245 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEE 304
KLHQRA HVYSEAKRVHAF+DTVSS+LSEE+KLKKLGDLMN+SH+SCSVLYECSCPELEE
Sbjct: 360 KLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLYECSCPELEE 419
Query: 305 LVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLG 364
LV VCR+NGALGARLTGAGWGGC VALVKE+I QFIL LKE+FY+SRI++GVI DLG
Sbjct: 420 LVKVCRDNGALGARLTGAGWGGCAVALVKEAIVPQFILALKEKFYKSRIEKGVIKEEDLG 479
Query: 365 LYVFASKPSSGAAKFKF 381
LYVFASKPSSGAA KF
Sbjct: 480 LYVFASKPSSGAAILKF 496
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and
metabolism].
Length = 390
Score = 190 bits (485), Expect = 5e-57
Identities = 103/367 (28%), Positives = 148/367 (40%), Gaps = 81/367 (22%)
Query: 21 YVKAKGL---DVGPPV-GLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEI 76
YVK G GLDI++ G +P G+GLSSS A + +AL F + + K E+
Sbjct: 98 YVKGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAEL 157
Query: 77 AQLTCECE-QFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGG-TFVVAHSL 134
A++ E QF+G G MDQ S K A L+D + V P GG + V+ +S
Sbjct: 158 AKIAQVAENQFVGVNCGIMDQLASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSN 217
Query: 135 AESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNG 194
K A S YN R EC A L + + K+L DV
Sbjct: 218 V---KRELADSEYNERRAECEEAAEFLGVSI-----------KSLRDV------------ 251
Query: 195 SSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVY 254
+ + A++ + +P K+ +RA HV
Sbjct: 252 TDEEFAALQAEIEVDP----------------------------------KIARRARHVV 277
Query: 255 SEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVN-VCRNNG 313
+E +RV + L + G+LMN+SH S YE +CPEL+ LV G
Sbjct: 278 TENQRV---LEAA--KALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGG 332
Query: 314 ALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPS 373
A GAR+TGAG+GGCV+ALV + E++ + L + + S
Sbjct: 333 AYGARMTGAGFGGCVIALVPNDDVEAVAEAVAEEYEKVT---------GLKAAFYVVEAS 383
Query: 374 SGAAKFK 380
GA
Sbjct: 384 QGAGVCD 390
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase. Galactokinase is a member of
the GHMP kinases (Galactokinase, Homoserine kinase,
Mevalonate kinase, Phosphomevalonate kinase) and shares
with them an amino-terminal domain probably related to
ATP binding.The galactokinases found by This model are
divided into two sets. Prokaryotic forms are generally
shorter. The eukaryotic forms are longer because of
additional central regions and in some cases are known
to be bifunctional, with regulatory activities that are
independent of galactokinase activity [Energy
metabolism, Sugars].
Length = 386
Score = 170 bits (431), Expect = 4e-49
Identities = 110/351 (31%), Positives = 150/351 (42%), Gaps = 81/351 (23%)
Query: 32 PVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQ 90
P+G DI+ G VPTGSGLSSS AF C+ L + + K+I E F+G
Sbjct: 108 PLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVN 167
Query: 91 SGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGG-TFVVAHSLAESLKAITAASNYNN 149
G MDQA S++ K A L++ ++ T + P G FV+A++ +K A SNYN
Sbjct: 168 CGIMDQAASVLGKEDHALLVECRSLKATPFKFPQLGIAFVIANTN---VKRTLAPSNYNT 224
Query: 150 RVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKE 209
R EC A LA L D
Sbjct: 225 RRQECTTAANFLAATD----------KGALRDF-------------------------MN 249
Query: 210 PYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRV----HAFKD 265
Y A I ++T+ + L +RA HV SE RV A KD
Sbjct: 250 EYFARYIARLTK-------------MLPLVE-------ERAKHVVSENLRVLKAVKAMKD 289
Query: 266 TVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELV-NVCRNNGALGARLTGAGW 324
D K+ G LMN+SH SC YEC+CPE++ELV + NG+ G+R+TGAG+
Sbjct: 290 --------ND-FKQFGALMNESHASCDDDYECTCPEIDELVCSAALVNGSGGSRMTGAGF 340
Query: 325 GGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSG 375
GGC V LV + + ++ Y + +L YV SKP +G
Sbjct: 341 GGCTVHLVPNENVDKVRQAVADK-YPKKTGL------ELTFYVIVSKPGAG 384
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional.
Length = 387
Score = 123 bits (312), Expect = 6e-32
Identities = 93/345 (26%), Positives = 140/345 (40%), Gaps = 88/345 (25%)
Query: 21 YVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLT 80
+++ G + G DIL+ G +P G+GLSSS + + V L F +++ + E+ +L
Sbjct: 101 FLQEAGYKIDH--GFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLG 158
Query: 81 CECE-QFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVV------AHS 133
+ E +FIG SG MDQ M K A L+D N + V L G +V
Sbjct: 159 QKTENEFIGVNSGIMDQFAIGMGKKDHAILLDCNTLEYEYVPLDLGDYVIVIMNTNKRRE 218
Query: 134 LAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKN 193
LA+S YN R EC ++A+ +++ D++ L
Sbjct: 219 LADS--------KYNERRAEC---------------EKALEELQKKLDIKSLG------- 248
Query: 194 GSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHV 253
L E+ E ++ K RA H
Sbjct: 249 -------------------ELTEEEFDEYS------------YLIKDETLLK---RARHA 274
Query: 254 YSEAKRV----HAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVC 309
+E +R A K L+K G LMN SH S YE + EL+ LV
Sbjct: 275 VTENQRTLKAVKALKA---------GDLEKFGRLMNASHVSLRDDYEVTGLELDTLVEAA 325
Query: 310 -RNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRI 353
+ G LGAR+TGAG+GGC +A+VK+ F N+ + Y+ +I
Sbjct: 326 WKQEGVLGARMTGAGFGGCAIAIVKKDKVEAFKENVGKA-YEEKI 369
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional.
Length = 382
Score = 102 bits (257), Expect = 2e-24
Identities = 96/345 (27%), Positives = 142/345 (41%), Gaps = 89/345 (25%)
Query: 20 EYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 79
++++ + D G G D+++ G VP G+GLSSS + + + + + EIA
Sbjct: 101 KHLQERNPDFG---GADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALN 157
Query: 80 TCECE-QFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESL 138
E E QF+G G MDQ IS + K A LID + T V +P G V+ +S ++
Sbjct: 158 GQEAENQFVGCNCGIMDQLISALGKKDHALLIDCRSLETKAVPMPEGVAVVIINS---NV 214
Query: 139 KAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDP 198
K S YN R +C A VK L DV F DP
Sbjct: 215 KRGLVDSEYNTRRQQCETAA-------------RFFGVKALRDVT--LEQFNAVAAELDP 259
Query: 199 VFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAK 258
V A +RA HV +E
Sbjct: 260 VVA----------------------------------------------KRARHVITENA 273
Query: 259 RVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELV----NVCRNNGA 314
R + S+ L+ D LK++G+LM +SH S +E + P+++ LV V + G
Sbjct: 274 RT---LEAASA-LAAGD-LKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDQG- 327
Query: 315 LGARLTGAGWGGCVVAL--------VKESIDSQF--ILNLKEQFY 349
G R+TG G+GGC+VAL V++++ Q+ LKE FY
Sbjct: 328 -GVRMTGGGFGGCIVALVPEELVEAVRQAVAEQYEAKTGLKETFY 371
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 80.8 bits (200), Expect = 6e-17
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
Query: 246 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEEL 305
L +RA +V E +RV +D L E D ++ LG+L+ +SH + YE SC EL+
Sbjct: 231 LRKRAGYVLRENERVLKVRDA----LKEGD-IETLGELLTESHWDLADNYEVSCEELDFF 285
Query: 306 VNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFY 349
V GA GARLTGAG+GG +ALV + L E++
Sbjct: 286 VEFALELGAYGARLTGAGFGGSAIALVDKGKFESIGEELLEEYK 329
Score = 74.3 bits (183), Expect = 1e-14
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 16 KAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKE 75
K ++ +G +VG + V +P G+GLSSS + + AL A+ + + K E
Sbjct: 71 KGVIWVLEKRGYEVGG---VKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLE 127
Query: 76 IAQLTCECE-QFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSL 134
+A L E E +F+G G MDQ K A +D + V P +V +
Sbjct: 128 LALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIFLDTMTLEYEYVPFPEDYEILVFDT- 186
Query: 135 AESLKAITAASNYNNRVVEC 154
+K A+S YN R EC
Sbjct: 187 --GVKRELASSEYNERRQEC 204
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase.
Length = 423
Score = 77.1 bits (190), Expect = 1e-15
Identities = 76/296 (25%), Positives = 115/296 (38%), Gaps = 67/296 (22%)
Query: 46 GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIMAKS 104
SGLSSS A + +AL A + V ++ +L E +++G ++G +DQ+ ++++
Sbjct: 143 SSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILDQSAILLSRY 202
Query: 105 GFAELIDFNPIRTTDVQLPAGGT-----FVVAHSLAESLKAITAASNYNNRVVECRLTAI 159
G +D + V L F + + + A+T YN RV EC+ A
Sbjct: 203 GCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGLRHALTNKPGYNLRVSECQEAAR 262
Query: 160 VLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKI 219
L G E + L +VE E Y A
Sbjct: 263 FLLEASGNDELEPL-----LCNVE------------------------PEVYEAH----- 288
Query: 220 TEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA-FKDTVSSNLSEEDKLK 278
+ KL ++ A +RA H +SE RV + S NL E
Sbjct: 289 -KCKLEAVLA------------------RRAEHYFSENMRVIKGVEAWASGNLEE----- 324
Query: 279 KLGDLMNDSHHSCSVLYECSCPELEELVNVC-RNNGALGARLTGAGWGGCVVALVK 333
G L++ S S YEC C L +L + + G GAR +GAG+ GC VA V
Sbjct: 325 -FGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVD 379
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain. This
family includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 67
Score = 66.8 bits (164), Expect = 2e-14
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 36 DILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMD 95
DI ++ +P G+GL SS A + +AL FG+ + K+E+A+L E E IG S G D
Sbjct: 1 DIEIESNIPLGAGLGSSAALAVALLLALNELFGLPLSKEELARLALEAEGAIGVNS-GDD 59
Query: 96 QAISIM 101
A S+
Sbjct: 60 VAASVY 65
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 69.3 bits (170), Expect = 3e-13
Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 7/64 (10%)
Query: 273 EEDKLKKLGDLMNDSHHSCSVLYEC---SCPELEELVNVCRNNGALGARLTGAGWGGCVV 329
+ ++LG+LMN + L + S PEL+ELV R+ GALGA+LTGAG GGC++
Sbjct: 221 QTGDFEELGELMNINQG----LLKALGVSTPELDELVEAARSLGALGAKLTGAGGGGCII 276
Query: 330 ALVK 333
AL K
Sbjct: 277 ALAK 280
Score = 52.7 bits (127), Expect = 1e-07
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 27 LDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQF 86
L+ + +D +P G+GL SS A + AL A FGVE+ +E+A+L + E
Sbjct: 76 LNQSSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELI 135
Query: 87 IGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAH 132
+ ++ G+D A G +++ GT V+
Sbjct: 136 VQGKASGIDIATITY--GGLVAFKKGFDFEK--LEIELLGTLVIGD 177
>gnl|CDD|240351 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 68.3 bits (167), Expect = 8e-13
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 245 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEE 304
+L + SEAK ++ L ++G+LMN +H C L SC EL+
Sbjct: 218 RLLENYNACVSEAKEA-----------LQKGNLFRVGELMNANHDLCQKL-TVSCRELDS 265
Query: 305 LVNVCRNNGALGARLTGAGWGGCVVALVKES 335
+V CR GALGA+++G G GG VVAL
Sbjct: 266 IVQTCRTYGALGAKMSGTGRGGLVVALAASE 296
>gnl|CDD|233017 TIGR00549, mevalon_kin, mevalonate kinase. This model represents
mevalonate kinase, the third step in the mevalonate
pathway of isopentanyl pyrophosphate (IPP) biosynthesis.
IPP is a common intermediate for a number of pathways
including cholesterol biosynthesis. This model covers
enzymes from eukaryotes, archaea and bacteria. The
related enzyme from the same pathway, phosphmevalonate
kinase, serves as an outgroup for this clade. Paracoccus
exhibits two genes within the
phosphomevalonate/mevalonate kinase family, one of which
falls between trusted and noise cutoffs of this model.
The degree of divergence is high, but if the trees
created from this model are correct, the proper names of
these genes have been swapped [Central intermediary
metabolism, Other].
Length = 274
Score = 66.5 bits (163), Expect = 2e-12
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 7/62 (11%)
Query: 273 EEDKLKKLGDLMNDSH---HSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVV 329
E+ ++ LG+LMN + + V S P+L++LV + R GALGA+LTGAG GGC++
Sbjct: 217 EDGDVESLGELMNINQGLLKALGV----SHPKLDQLVEIARKAGALGAKLTGAGGGGCMI 272
Query: 330 AL 331
AL
Sbjct: 273 AL 274
Score = 55.4 bits (134), Expect = 1e-08
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 31 PPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQ 90
P L+I +D +P G GL SS A + AL FG E+ K+E+A+L E E+ +
Sbjct: 76 NPPPLEITIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAELANEAEKIAHGK 135
Query: 91 SGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHS 133
G+D A S G T + L G FV+A +
Sbjct: 136 PSGIDTATSTS--GGPVYFEKGEGEFTKLISLD--GYFVIADT 174
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 66.4 bits (162), Expect = 4e-12
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 224 LTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDL 283
++S+ A L L A +RA HV +E +RV F ++ + G L
Sbjct: 221 VSSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAALADS-----DFTAAGQL 275
Query: 284 MNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKES 335
+ SH S +E + ++ + + GALGAR+TG G+GGCV+ALV
Sbjct: 276 LTASHASMRDDFEITTERIDLIADSAVRAGALGARMTGGGFGGCVIALVPAD 327
Score = 58.3 bits (141), Expect = 2e-09
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 43 VPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE-QFIGTQSGGMDQAISIM 101
V GSGLSSS A C+ A+ AA G + + E A+L E +++G +G +DQ ++
Sbjct: 100 VEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALF 159
Query: 102 AKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVL 161
A LIDF + V VV + + A Y R C A L
Sbjct: 160 GAPKTALLIDFRDLTVRPVAFDPDAAGVVLLLMDSRARHRHAGGEYAARRASCERAAADL 219
Query: 162 AI 163
+
Sbjct: 220 GV 221
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal. This family
includes homoserine kinases, galactokinases and
mevalonate kinases.
Length = 86
Score = 61.0 bits (148), Expect = 5e-12
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 269 SNLSEEDKLKKLGDLMNDSHHSC--SVLYECSCPELEELVNVCRNNGALGARLTGAGWGG 326
L E D L+ LG+L+N++ S + PEL+EL+ R GALGA+L+G+G G
Sbjct: 3 EALREGD-LELLGELLNENALSLEPLLYLGILSPELDELLEELRELGALGAKLSGSGGGP 61
Query: 327 CVVALVKESIDSQFILN-LKEQFYQ 350
V AL K+ D++ + L+E +
Sbjct: 62 TVFALFKDEEDAEEVAEALREAYPL 86
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 58.9 bits (143), Expect = 1e-09
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 275 DKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALV 332
LG+LMN + L S EL EL+ R GALGA++TGAG GGC+VAL
Sbjct: 211 GDYVSLGELMNINQGLLDAL-GVSTKELSELIYAARTAGALGAKITGAGGGGCMVALA 267
Score = 47.0 bits (112), Expect = 8e-06
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 21 YVKA---KGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 77
YV A K + G+ + + +P GSGL SS A ++ AL G+ + +EIA
Sbjct: 59 YVSAAIEKMREEADKDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIA 118
Query: 78 QLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLPAGGT 127
+L + E + + D +S M GF + D + + + G T
Sbjct: 119 KLGHKVELLVQGAASPTDTYVSTMG--GFVTIPDRKKLPFPECGIVVGYT 166
>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 57.1 bits (138), Expect = 6e-09
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 271 LSEEDKLKKLGDLMNDSHHSCSVLYECSCPELE---ELVNVCRNNGALGARLTGAGWGGC 327
LS E++ +K G+++N H L + + PEL+ EL+N G G R+ G G+GGC
Sbjct: 356 LSREERFRKAGEILNAGHQGMRDLMKITTPELDFIHELIN--EEKGVAGGRMMGGGFGGC 413
Query: 328 VVALVKESIDSQFILNLKEQF 348
++ L+K++ + + +++E+F
Sbjct: 414 IILLLKKNAVDRVVAHVREKF 434
Score = 38.7 bits (90), Expect = 0.005
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 29/104 (27%)
Query: 27 LDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEV--------------- 71
+D G+ ++V GT+P G+G+S+S +F VAL+ A V
Sbjct: 127 IDAPSLQGVCMVVHGTLPMGAGMSASASF----GVALLNAINTVVTRRYKGCPTSPGRRY 182
Query: 72 ------PKKEIAQLTCECE----QFIGTQSGGMDQAISIMAKSG 105
K+E+ +L + +F G G MDQ IS A+
Sbjct: 183 SILPPMSKEELIELAKQARRIETEFCGVNVGIMDQFISAFAEED 226
>gnl|CDD|226917 COG4542, PduX, Protein involved in propanediol utilization, and
related proteins (includes coumermycin biosynthetic
protein), possible kinase [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 293
Score = 46.7 bits (111), Expect = 9e-06
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 34 GLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 84
G+D+L+ ++P G G++SSTA + ++ A G E+ + EIA+L E
Sbjct: 83 GIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIE 133
>gnl|CDD|224599 COG1685, COG1685, Archaeal shikimate kinase [Amino acid transport
and metabolism / Coenzyme metabolism].
Length = 278
Score = 41.2 bits (97), Expect = 5e-04
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 29 VGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 79
G P+G+++ V+ +P GSGL SS+A + A++ A G E+ EI +L
Sbjct: 65 YGIPLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRL 115
>gnl|CDD|233637 TIGR01920, Shik_kin_archae, shikimate kinase. This model
represents the shikimate kinase (SK) gene found in
archaea which is only distantly related to homoserine
kinase (thrB) and not atr all to the bacterial SK
enzyme. The SK from M. janaschii has been overexpressed
in E. coli and characterized. SK catalyzes the fifth
step of the biosynthesis of chorismate from
D-erythrose-4-phosphate and phosphoenolpyruvate [Amino
acid biosynthesis, Aromatic amino acid family].
Length = 261
Score = 37.8 bits (88), Expect = 0.006
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 22 VKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 79
+ A G GL++ V+ +P GSGL SS+A V + A++ A GVE+ +I +L
Sbjct: 52 LTAIRSKFGIVDGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRL 109
>gnl|CDD|237379 PRK13412, fkp, bifunctional
fucokinase/L-fucose-1-P-guanylyltransferase;
Provisional.
Length = 974
Score = 37.9 bits (88), Expect = 0.010
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 34 GLDILVDGTVPTGSGLSSSTAFVCSSTV--ALMAAFGVEVPKKEIAQLTCECEQFIGTQS 91
G++I + +P GSGL +S+ + ++TV A+ G+ K EI T EQ + T
Sbjct: 726 GIEITLLAAIPAGSGLGTSS--ILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGG 783
Query: 92 GGMDQA 97
G DQ
Sbjct: 784 GWQDQY 789
>gnl|CDD|234906 PRK01123, PRK01123, shikimate kinase; Provisional.
Length = 282
Score = 36.8 bits (86), Expect = 0.013
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 30 GPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQL 79
G G + +P SGL SS+A ++ +A + A G ++ +I +L
Sbjct: 71 GIDYGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRL 120
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and
mevalonate kinase [General function prediction only].
Length = 333
Score = 36.6 bits (85), Expect = 0.014
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 25 KGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAF----GVEVPKKEIAQLT 80
+ G P +++ P GSGL SS+AFV VAL+ A G + E+A+
Sbjct: 82 LEFNGGTP--IELHTQSDAPPGSGLGSSSAFV----VALLNALHAWKGESLGPYELAREA 135
Query: 81 CECEQFIGTQSGG-MDQAISIMAKSGFAELIDFNP 114
E E+ GG DQ A G ++F
Sbjct: 136 YEIEREDLKIVGGKQDQ---YAAAFGGFNFMEFRG 167
Score = 34.3 bits (79), Expect = 0.084
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 262 AFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYE-CSCPELEELVNVCRNNGALGARLT 320
KD + N + + G +++ + L S ++ + + NGA G +L+
Sbjct: 232 EMKDALVRN-----DIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLS 286
Query: 321 GAGWGGCVVALVKES 335
GAG GG ++ S
Sbjct: 287 GAGGGGFLLFFCDPS 301
>gnl|CDD|129295 TIGR00191, thrB, homoserine kinase. Homoserine kinase is part of
the threonine biosynthetic pathway.Homoserine kinase is
a member of the GHMP kinases (Galactokinase, Homoserine
kinase, Mevalonate kinase, Phosphomevalonate kinase) and
shares with them an amino-terminal domain probably
related to ATP binding.P.aeruginosa homoserine kinase
seems not to be homologous (see PROSITE:PDOC0054) [Amino
acid biosynthesis, Aspartate family].
Length = 302
Score = 36.6 bits (85), Expect = 0.017
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 15 YKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKK 74
Y+ ++ G+ + P + + ++ +P G GL SS A + ++ A G+ + K+
Sbjct: 64 YQVAKRFLDQLGIRMPP---VKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKE 120
Query: 75 EIAQLTCECE 84
+ E E
Sbjct: 121 RLLDYASELE 130
>gnl|CDD|223161 COG0083, ThrB, Homoserine kinase [Amino acid transport and
metabolism].
Length = 299
Score = 36.0 bits (84), Expect = 0.024
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 15 YKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKK 74
Y+A ++++ +G G+ I ++ +P G GL SS A + ++ A G+ + K+
Sbjct: 62 YQAALKFLE----ALGIEAGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKE 117
Query: 75 EIAQLTCECE 84
E+ QL E E
Sbjct: 118 ELLQLALEIE 127
Score = 27.9 bits (63), Expect = 7.7
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 300 PELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGV 357
P E+ GALGA L+GAG V AL ES D++ L E+ Y+ I V
Sbjct: 230 PGYAEVREAALEAGALGATLSGAGPT--VFALADES-DAEKAAALLEELYEQGIKGRV 284
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 33.9 bits (79), Expect = 0.16
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 50 SSSTAFVCSSTVALMAAFGVEVPKKEIA 77
SSS A VC S++ALM A GV + K +A
Sbjct: 437 SSSMASVCGSSLALMDA-GVPI-KAPVA 462
>gnl|CDD|215248 PLN02451, PLN02451, homoserine kinase.
Length = 370
Score = 32.8 bits (75), Expect = 0.26
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 33 VGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 84
VGL + + +P GSGL SS A ++ VA+ FG + K ++ E E
Sbjct: 133 VGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESE 184
>gnl|CDD|215363 PLN02677, PLN02677, mevalonate kinase.
Length = 387
Score = 32.5 bits (74), Expect = 0.33
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 37 ILVDGTVPTGSGLSSSTAFVCSSTVALMAAFG-------------VEVPKKEIA-QLTCE 82
++V +P GSGL SS AF + + AL+AA ++ E+ + E
Sbjct: 132 VVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFE 191
Query: 83 CEQFIGTQSGGMDQAIS 99
E+ I + G+D +S
Sbjct: 192 GEKIIHGKPSGIDNTVS 208
Score = 30.6 bits (69), Expect = 1.4
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 272 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGA--LGARLTGAGWGGCVV 329
+E+KLK+L + MN L +C + V R L ++LTGAG GGCV+
Sbjct: 291 EKEEKLKELME-MNQG------LLQCMGVSHSSIETVLRTTLKYKLVSKLTGAGGGGCVL 343
Query: 330 ALV 332
L+
Sbjct: 344 TLL 346
>gnl|CDD|234920 PRK01212, PRK01212, homoserine kinase; Provisional.
Length = 301
Score = 32.0 bits (74), Expect = 0.41
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 10/73 (13%)
Query: 15 YKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAA---FGVEV 71
Y+A ++++ +G P GL I ++ +P G GL SS A S L+AA G+ +
Sbjct: 66 YQAALKFLE----KLGKPPGLRIELEKNIPLGRGLGSSAA---SIVAGLVAANELAGLPL 118
Query: 72 PKKEIAQLTCECE 84
K+E+ QL E E
Sbjct: 119 SKEELLQLATEGE 131
Score = 29.0 bits (66), Expect = 3.8
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 300 PELEELVNVCRNNGALGARLTGAGWGGCVVAL--------VKESIDSQFILNLKEQFYQS 351
P E+ GALGA ++GA G V AL V +++ F+ ++ +
Sbjct: 234 PGFAEVRQAALEAGALGAGISGA--GPTVFALCDKEDAEKVADALQKAFLQGIEGFVHVL 291
Query: 352 RIDRG 356
R+D
Sbjct: 292 RLDTA 296
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase.
Members of this protein family are polyribonucleotide
nucleotidyltransferase, also called polynucleotide
phosphorylase. Some members have been shown also to have
additional functions as guanosine pentaphosphate
synthetase and as poly(A) polymerase (see model
TIGR02696 for an exception clade, within this family)
[Transcription, Degradation of RNA].
Length = 684
Score = 32.1 bits (74), Expect = 0.56
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 45 TGSGLSSSTAFVCSSTVALMAAFGV 69
S SSS A VC ++ALM A GV
Sbjct: 428 LESNGSSSMASVCGGSLALMDA-GV 451
>gnl|CDD|206769 cd11364, RNase_PH_PNPase_2, Polyribonucleotide
nucleotidyltransferase, repeat 2. Polyribonucleotide
nucleotidyltransferase (PNPase) is a member of the
RNase_PH family, named after the bacterial Ribonuclease
PH, a 3'-5' exoribonuclease. Structurally, all members
of this family form hexameric rings. In the case of
PNPase the complex is a trimer, since each monomer
contains two tandem copies of the domain. PNPase is
involved in mRNA degradation in a 3'-5' direction and in
quality control of ribosomal RNA precursors, with the
second repeat containing the active site. PNPase is part
of the RNA degradosome complex and binds to the
scaffolding domain of the endoribonuclease RNase E.
Length = 223
Score = 31.0 bits (71), Expect = 0.79
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 45 TGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIA 77
S SSS A VC ++ALM A GV + K +A
Sbjct: 110 LESNGSSSMASVCGGSLALMDA-GVPI-KAPVA 140
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
(polynucleotide phosphorylase) [Translation, ribosomal
structure and biogenesis].
Length = 692
Score = 31.4 bits (72), Expect = 0.81
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 45 TGSGLSSSTAFVCSSTVALMAAFGVEVP-KKEIA 77
S SSS A VC ++ALM A VP K +A
Sbjct: 430 LESNGSSSMASVCGGSLALMDA---GVPIKAPVA 460
>gnl|CDD|143280 cd05872, Ig_Sema4B_like, Immunoglobulin (Ig)-like domain of the
class IV semaphorin Sema4B. Ig_Sema4B_like;
Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B
is a Class IV semaphorin. Semaphorins are classified
based on structural features additional to the Sema
domain. Sema4B has extracellular Sema and Ig domains, a
transmembrane domain and a short cytoplasmic domain.
Sema4B has been shown to preferentially regulate the
development of the postsynaptic specialization at the
glutamatergic synapses. This cytoplasmic domain
includes a PDZ-binding motif upon which the synaptic
localization of Sem4B is dependent. Sema4B is a ligand
of CLCP1, CLCP1 was identified in an expression
profiling analysis, which compared a highly metastic
lung cancer subline with its low metastic parental
line. Sema4B was shown to promote CLCP1 endocytosis,
and their interaction is a potential target for
therapeutic intervention of metastasis.
Length = 85
Score = 28.5 bits (64), Expect = 1.4
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 26 GLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSS----TVALMAAFGVEVP 72
G + + DG + + S + C S L+A++ + V
Sbjct: 33 GTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNVV 83
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid
metabolism].
Length = 245
Score = 29.6 bits (67), Expect = 2.3
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 164 KLGMKPQEAISKVKTLS-DVEGLCVAFACKNGS-SDPVFAVKEFLRKEPYTALDIEKITE 221
+L + +EAI K + + + GL + A G + V AV++ L E I E
Sbjct: 114 RLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPEDIDE 173
Query: 222 EKLTS 226
E ++S
Sbjct: 174 ELISS 178
>gnl|CDD|216923 pfam02190, LON, ATP-dependent protease La (LON) domain. This
domain has been shown to be part of the PUA superfamily.
Length = 191
Score = 29.3 bits (66), Expect = 2.7
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 18/105 (17%)
Query: 200 FAVKEFLRKEPYTALDIEKITEEKLTSIF----ANSSSSLDVLNAAKQYKLHQRAAHVYS 255
F + E ++EPY ++E + EE+L + A ++ + L
Sbjct: 87 FRILELEQEEPYLVAEVEDLPEEELEELLEALEALVKELIEKIKELLPLLLPLELLLKID 146
Query: 256 EAKRVHAFKDTVSSNL--SEEDK------------LKKLGDLMND 286
+ + D ++S L S E+K L+KL +L+
Sbjct: 147 DIEDPGRLADLIASLLPLSPEEKQELLETLDVKERLEKLLELLKR 191
>gnl|CDD|222085 pfam13377, Peripla_BP_3, Periplasmic binding protein-like domain.
Thi domain is found in a variety of transcriptional
regulatory proteins. It is related to bacterial
periplasmic binding proteins, although this domain is
unlikely to be found in the periplasm. This domain
likely acts to bind a small molecule ligand that the
DNA-binding domain responds to.
Length = 161
Score = 28.9 bits (65), Expect = 2.7
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 14 RYKAFYEYVKAKGLDVGPPV--GLDILVDGTVPTGSGLSSS---TAFVCSS---TVALMA 65
R + F E ++ GL + V G D LS S TA + ++ + ++
Sbjct: 27 RERGFREALRELGLPLEVLVVPGDDGEEAAGAALLLLLSRSPRPTAVIAANDELALGVLQ 86
Query: 66 AF---GVEVPKKEIA 77
A G+ VP ++I+
Sbjct: 87 ALREAGLRVP-EDIS 100
>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed.
Length = 292
Score = 29.2 bits (67), Expect = 3.4
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 204 EFLRKE-PY-TALDIEKITEEKLTSIFAN 230
L E PY A++IEK E L I A
Sbjct: 201 RLLGDELPYSVAVEIEKFEERGLVRIEAT 229
>gnl|CDD|188029 TIGR00154, ispE, 4-diphosphocytidyl-2C-methyl-D-erythritol kinase.
Members of this family of GHMP kinases were previously
designated as conserved hypothetical protein YchB or as
isopentenyl monophosphate kinase. It is now known, in
tomato and E. coli, to encode
4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an
enzyme of the deoxyxylulose phosphate pathway of
terpenoid biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 294
Score = 29.0 bits (65), Expect = 3.9
Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 300 PELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGV 357
E+ + +N G R++G+ G CV AL +++ +L ++ + +G
Sbjct: 229 TEVAQALNWLLEYGLAPERMSGS--GPCVFALFDMESEAEQVLEQAPEWLNGFVAKGY 284
>gnl|CDD|222027 pfam13288, DXPR_C, DXP reductoisomerase C-terminal domain. This is
the C-terminal domain of the
1-deoxy-D-xylulose-5-phosphate reductoisomerase enzyme.
This domain forms a left handed super-helix.
Length = 118
Score = 27.8 bits (63), Expect = 4.3
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 190 ACKNGSSDPVF-------AVKEFLRKE-PYTALDIEKITEEKLTSIFANSSSSL-DVLNA 240
A + G + P AV FL + + LDI +I E+ L + SL D+L A
Sbjct: 53 ALRAGGTAPAVLNAANEVAVAAFLEGKIGF--LDIARIVEKVLDAHEPIEPPSLEDILEA 110
>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate
synthase. Previously known as uncharacterized protein
family UPF0015, a single member of this family has been
identified as an undecaprenyl diphosphate synthase.
Length = 222
Score = 28.7 bits (65), Expect = 5.0
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 185 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTS 226
L +A G + V AVK R L E I EE +
Sbjct: 116 LNIAL-NYGGRDEIVDAVKRLARDVADGKLSPEDIDEEVIEK 156
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 28.8 bits (64), Expect = 5.4
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 221 EEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLK 278
E+ + S LN K+YK+H++ HV + + S+L E + K
Sbjct: 557 EQLVQSTEIKLDELKVDLNR-KRYKIHKQVIHVIDITSKFKI---NIQSSLEDLENELGK 612
Query: 279 KLGDLMN 285
+ +L N
Sbjct: 613 VIEELRN 619
>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2.
Members of the HesA/MoeB/ThiF family of proteins
(pfam00899) include a number of members encoded in the
midst of thiamine biosynthetic operons. This mix of
known and putative ThiF proteins shows a deep split in
phylogenetic trees, with one the E. coli ThiF and the E.
coli MoeB proteins seemingly more closely related than
E. coli ThiF and Campylobacter (for example) ThiF. This
model represents the divergent clade of putative ThiF
proteins such found in Campylobacter [Biosynthesis of
cofactors, prosthetic groups, and carriers, Thiamine].
Length = 200
Score = 28.3 bits (63), Expect = 5.4
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 18/126 (14%)
Query: 200 FAVKEFLRK-EPYTALDI--EKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAH-VYS 255
A+KE + + PYT ++ EKITEE + F ++ + + A+ + A Y
Sbjct: 77 EALKENISEINPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYK 136
Query: 256 EAKRVHA--FKDTVSSNLSEEDKLKK----LGDLMNDSHHSCSVLYECSCPELEELVNVC 309
+ + A +N + K+ K GD +D+ ++ P V +C
Sbjct: 137 DKYLIAASGLAGYDDANSIKTRKISKHFYLCGDGKSDAKQGLGLM----APR----VQIC 188
Query: 310 RNNGAL 315
+ A
Sbjct: 189 AAHQAN 194
>gnl|CDD|215187 PLN02328, PLN02328, lysine-specific histone demethylase 1 homolog.
Length = 808
Score = 28.8 bits (64), Expect = 6.2
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 248 QRAAHVYSEA-KRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEEL 305
+ AA++ A +R D V+++ E+D L +L D + + S S+L++ + E L
Sbjct: 670 REAANILRVARRRSLCIDDKVNNDEEEDDCLDQLFDTPDLTFGSFSILFDPRSNDPESL 728
>gnl|CDD|176506 cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase
domain of Thermoanaerobacter tengcongensis and similar
proteins. This subfamily corresponds to the
glycerophosphodiester phosphodiesterase domain (GDPD)
present in Thermoanaerobacter tengcongensis
glycerophosphodiester phosphodiesterase (TtGDE, EC
3.1.4.46) and its uncharacterized homologs. Members in
this family show high sequence similarity to Escherichia
coli GP-GDE, which catalyzes the degradation of
glycerophosphodiesters to produce
sn-glycerol-3-phosphate (G3P) and the corresponding
alcohols. Despite the fact that most of GDPD family
members exist as the monomer, TtGDE can function as a
dimeric unit. Its catalytic mechanism is based on the
general base-acid catalysis, which is similar to that of
phosphoinositide-specific phospholipases C (PI-PLCs, EC
3.1.4.11). A divalent metal cation is required for the
enzyme activity of TtGDE.
Length = 230
Score = 27.5 bits (62), Expect = 9.7
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 10/48 (20%)
Query: 108 ELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECR 155
E +D RTT+ G V E LK + A S ++ + +
Sbjct: 50 ETVD----RTTN------GKGYVKDLTLEELKKLDAGSWFDEKFTGEK 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.388
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,800,968
Number of extensions: 1778838
Number of successful extensions: 1703
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1676
Number of HSP's successfully gapped: 67
Length of query: 381
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 282
Effective length of database: 6,546,556
Effective search space: 1846128792
Effective search space used: 1846128792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)