RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 016879
(381 letters)
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 183
Score = 93.2 bits (231), Expect = 3e-23
Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 22/168 (13%)
Query: 212 TALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 271
T LDI+ + E AN+ D L +RA H E R +
Sbjct: 36 TRLDIQSLGELSNEEFDANTDLIGDET-------LIKRARHAVYENNRTKIAQ-----KA 83
Query: 272 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCR-NNGALGARLTGAGWGGCVVA 330
L K G+L+N SH S YE + EL+ L + G LGAR+TGAG+GGC +A
Sbjct: 84 FVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIA 143
Query: 331 LVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGLYVFASKPSSGAAK 378
LV S F + + + + + ++ SG+ K
Sbjct: 144 LVAHDNVSAFRKAVGQVYEEVV---------GYPASFYVAQIGSGSTK 182
Score = 30.8 bits (69), Expect = 0.17
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 128 FVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMK 168
V+ ++ S YN R E R + +L ++
Sbjct: 4 IVIMNTNK---PRALTESKYNERFAETREALKRMQTRLDIQ 41
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 171
Score = 92.1 bits (228), Expect = 7e-23
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 14/131 (10%)
Query: 246 LHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEEL 305
+ +++ E RV +D + +E ++K+G ++ +H + Y SC EL+
Sbjct: 54 HRKFFSYIVRENARVLEVRDAL-----KEGDIEKVGKILTTAHWDLAENYRVSCEELDFF 108
Query: 306 VNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRIDRGVINNNDLGL 365
V GA GARLTGAG+GG +ALV + + ++
Sbjct: 109 VKKAMELGAYGARLTGAGFGGSAIALVDKDKAKTIGDAILREYLA---------KFSWKA 159
Query: 366 YVFASKPSSGA 376
F KPS G
Sbjct: 160 KYFVVKPSDGV 170
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 176
Score = 85.9 bits (212), Expect = 1e-20
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 19/143 (13%)
Query: 235 LDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL 294
L+ + +RA HV E +R + + G LM +SH S
Sbjct: 47 LEAARDLVSKEGFRRARHVVGEIRRTAQAAAAL-----RRGDYRAFGRLMVESHRSLRDD 101
Query: 295 YECSCPELEELVNVCRN-NGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSRI 353
YE SCPEL++LV G G+R+TG G+GGC V L++ S + +++E +
Sbjct: 102 YEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHYG---- 157
Query: 354 DRGVINNNDLGLYVFASKPSSGA 376
+ S+ + GA
Sbjct: 158 ---------GTATFYLSQAADGA 171
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 81.5 bits (200), Expect = 1e-18
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 31 PPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGT 89
P G +V +VP G GLSSS + ++ L AQ+ + E F G
Sbjct: 120 PLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGM 179
Query: 90 QSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP 123
G MDQ IS+M + G A LID + T+ V L
Sbjct: 180 PCGIMDQFISLMGQKGHALLIDCRSLETSLVPLS 213
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 176
Score = 79.1 bits (194), Expect = 4e-18
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 31 PPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGT 89
GL + G +P G+GLSSS +F L + + + + A L + E F+G
Sbjct: 82 KIGGLKGKITGDLPLGAGLSSSASFEVGILEVLNQLYNLNIDPLKKALLAKKAENEFVGV 141
Query: 90 QSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP 123
G +DQ + K +D ++ + P
Sbjct: 142 PCGILDQFAVVFGKKDNVIFLDTQTLQYEYIPFP 175
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 205
Score = 78.7 bits (193), Expect = 1e-17
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 34 GLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSG 92
G ++L+ G +PT SGLSSS + V L F + VP+ E+ QL + E +IG SG
Sbjct: 113 GFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSG 172
Query: 93 GMDQAISIMAKSGFAELIDFNPIRTTDV 120
+DQ + A +D N ++ V
Sbjct: 173 ILDQFAIGFGEVKKAIELDCNTLKYEMV 200
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 72.7 bits (178), Expect = 5e-16
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 6/101 (5%)
Query: 248 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVN 307
+ E +RV ++ L +LM+ + H + L++L
Sbjct: 41 TSIDAISLECERVLGEMAA----APVPEQYLVLEELMDMNQHHLNA-LGVGHASLDQLCQ 95
Query: 308 VCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQF 348
V +G ++LTGAG GGC + L+K ++ + K+
Sbjct: 96 VTAAHGL-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQAL 135
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 137
Score = 61.1 bits (148), Expect = 3e-12
Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Query: 215 DIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEE 274
+ E+ + I + + ++ E +V + L +
Sbjct: 3 EFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEIDKV------IDEALKIK 56
Query: 275 DKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKE 334
+ + G LM +H S P+L+ +V++ G GA+LTGAG GGCV+ LV E
Sbjct: 57 N-KEDFGKLMTKNHELLKK-LNISTPKLDRIVDIGNRFGF-GAKLTGAGGGGCVIILVNE 113
Query: 335 SIDSQFILNLKEQFYQ 350
+ + + L ++ +
Sbjct: 114 EKEKELLKELNKEDVR 129
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 180
Score = 60.3 bits (145), Expect = 2e-11
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 3/112 (2%)
Query: 5 FHLWCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALM 64
+ F F+Y L++ P G I + +P GL SS + + A+
Sbjct: 70 INPNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVS 129
Query: 65 AAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFNPIR 116
+ E+ EIA+L E+ I ++ D + I N R
Sbjct: 130 GFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITY---KGILEIKNNKFR 178
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 225
Score = 58.7 bits (141), Expect = 1e-10
Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 15/102 (14%)
Query: 15 YKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGV----- 69
AF A LDI+V +P G+GL SS A+ AL+ A
Sbjct: 109 LLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPL 168
Query: 70 ----------EVPKKEIAQLTCECEQFIGTQSGGMDQAISIM 101
E K I + E E+ I G+D ++S
Sbjct: 169 KDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTW 210
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 194
Score = 46.8 bits (110), Expect = 8e-07
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 8 WCFVFFRYKAFYEYVKAKGLDVGPPVGLDILVDGTVPTGS---GLSSSTAFVCSSTVALM 64
+ + +++ +G ++ P + + G + GL SS + V AL+
Sbjct: 63 YSLIQETIALMGDFLAVRGQNLRP---FSLAIYGKMEREGKKFGLGSSGSVVVLVVKALL 119
Query: 65 AAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISI 100
A + + V + + +LT G D A
Sbjct: 120 ALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIA 155
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 135
Score = 43.5 bits (102), Expect = 5e-06
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 273 EEDKLKKLGDLMNDSHHSCSVL-YECSCPELEELVNVCRNNGALGARLTGAGWGGCVVAL 331
E+ K +K+ + + + L + P L +L ++ A A+ +GAG G C +AL
Sbjct: 50 EQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQA-VAKSSGAGGGDCGIAL 108
Query: 332 VKESIDSQFILN 343
++ ++ + N
Sbjct: 109 SFDAQSTKTLKN 120
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 32.3 bits (73), Expect = 0.062
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 35 LDILVDGTVPTGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLT 80
L I+ + PT +GL+SS A + A+ + + EI+++
Sbjct: 102 LHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIA 147
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 133
Score = 30.1 bits (67), Expect = 0.19
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 299 CPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLK---EQFYQSRIDR 355
P ++ ++ G ++G+ G ++A KE + L+ E ++ + +
Sbjct: 72 IPNYFKIKEEVKD-KVYGITISGS--GPSIIAFPKEEFIDEVENILRDYYENTIRTEVGK 128
Query: 356 GV 357
GV
Sbjct: 129 GV 130
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 28.0 bits (61), Expect = 1.3
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 272 SEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVNVCRNNG 313
EE K + L DL + + +V++ + ++EEL RN+
Sbjct: 10 EEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK 51
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 467
Score = 27.3 bits (60), Expect = 3.3
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 301 ELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILNLKEQFYQSR 352
EL+ + ++ G G +V +++D+ FI+ +K +F +++
Sbjct: 44 ELKPISKEGHSSSLFGN-----IKGATIV----DALDTLFIMGMKTEFQEAK 86
>d1cnva_ c.1.8.5 (A:) Seed storage protein {Jack bean (Canavalia
ensiformis), Concanavalin B [TaxId: 3823]}
Length = 283
Score = 26.7 bits (58), Expect = 5.3
Identities = 15/91 (16%), Positives = 23/91 (25%), Gaps = 3/91 (3%)
Query: 284 MNDSHHSCSVLYECSCPELEELVNVCRNNGALGARLTGAGWGGCVVALVKESIDSQFILN 343
+ C C LE + C+ G L G G +
Sbjct: 48 LELEGV-CGPSVGNPCSFLESQIKECQRMGVK-VFLALGGPKG-TYSACSADYAKDLAEY 104
Query: 344 LKEQFYQSRIDRGVINNNDLGLYVFASKPSS 374
L F R + + G++ KP
Sbjct: 105 LHTYFLSERREGPLGKVALDGIHFDIQKPVD 135
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Trichoderma reesei [TaxId: 51453]}
Length = 488
Score = 26.6 bits (58), Expect = 5.8
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 9/51 (17%)
Query: 323 GWGGCVVALVKESIDSQFILNLKEQFYQSR-----IDRGVINNNDLGLYVF 368
GWG + + +D+ ++ + I+ + G VF
Sbjct: 47 GWGSSAI----DGLDTAILMGDADIVNTILQYVPQINFTTTAVANQGSSVF 93
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 72
Score = 24.6 bits (54), Expect = 6.1
Identities = 7/19 (36%), Positives = 16/19 (84%)
Query: 161 LAIKLGMKPQEAISKVKTL 179
LA ++G++ Q+AI++++ L
Sbjct: 27 LAFQMGLRTQDAINRIQDL 45
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 148
Score = 25.9 bits (56), Expect = 6.4
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 50 SSSTAFVCSSTVALMAA 66
S + ++++AL A
Sbjct: 130 GSRLVSLMAASLALADA 146
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 144
Score = 25.6 bits (55), Expect = 7.8
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 50 SSSTAFVCSSTVALMAAFGV 69
S TA + +++VAL+ A GV
Sbjct: 126 GSRTACLNAASVALVDA-GV 144
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.388
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,351,790
Number of extensions: 60545
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 26
Length of query: 381
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,213,086
Effective search space: 356647284
Effective search space used: 356647284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)