BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016880
(381 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225429414|ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
gi|296081598|emb|CBI20603.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/404 (53%), Positives = 278/404 (68%), Gaps = 27/404 (6%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
MGMGFRLNLKW P+ T S RL ++SV+G+E SF+S R SF S SED S ++D
Sbjct: 1 MGMGFRLNLKWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKD 60
Query: 61 PVKAYTCSFVNTQTVENDYSETEEIRQKSTSC---------------IGQD--------- 96
P K + CS QT ENDYS E ++ K C IG+D
Sbjct: 61 PFKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQ 120
Query: 97 ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
AS S F LL+ENLD+LE FADS+ +RLER+I+ QLG+LGALKLF LSR +KTS
Sbjct: 121 ASKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSF 180
Query: 157 DLSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEAL 213
DL TE E + N + D H+ K++V S +K +RK K R E++ LPS+ +
Sbjct: 181 DLFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTI 240
Query: 214 QEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
++G +P++ + +R LNSR +RL A+NEAEMSKGV++VANLERI+ TLE+E G ASL+
Sbjct: 241 RKGPGRPSVSTVKRTLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLS 300
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
WA+AAGV ++VL+Q L FGWYCR+EL++ST LVL++ARNYRG+G+ F D+LQAGN+GV
Sbjct: 301 NWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGV 360
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
LQGAERFDHT+GY+FSTYVQYWIRKS+S +VARHARG+KIP L
Sbjct: 361 LQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTL 404
>gi|147865632|emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/373 (52%), Positives = 258/373 (69%), Gaps = 27/373 (7%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQKSTS 91
++G+E SF+S R SF S SED S ++DP K + CS QT ENDYS E ++ K
Sbjct: 82 IQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEAMKMKIGK 141
Query: 92 C---------------IGQD---------ASSRSDFRLLMENLDVLESTFADSDALRLER 127
C IG+D AS S F LL+ENLD+LE FADS+ +RLER
Sbjct: 142 CSHGDLFKIVNASQAPIGEDISASVAGLQASKASQFSLLLENLDILEEMFADSNMVRLER 201
Query: 128 EILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTE---EQKMNDSRDYHMGKILVPSK 184
+I+ QLG+LGALKLF LSR +KTS DL TE E + N + D H+ K++V S
Sbjct: 202 DIMVQLGRLGALKLFQICLSRTLKTSTSFDLFSAPTEHIRECQTNGTVDDHLDKVVVRSG 261
Query: 185 RKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAE 244
+K +RK K R E++ LPS+ +++G +P++ + +R LNSR +RL A+NEAE
Sbjct: 262 KKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKRTLNSRRKRLMNAKNEAE 321
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
MSKGV++VANLERI+ TLE+E G ASL+ WA+AAGV ++VL+Q L FGWYCR+EL++ST
Sbjct: 322 MSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRST 381
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LVL++ARNYRG+G+ F D+LQAGN+GVLQGAERFDHT+GY+FSTYVQYWIRKS+S +V
Sbjct: 382 HSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLV 441
Query: 365 ARHARGIKIPVPL 377
ARHARG+KIP L
Sbjct: 442 ARHARGVKIPFTL 454
>gi|224088962|ref|XP_002308586.1| predicted protein [Populus trichocarpa]
gi|222854562|gb|EEE92109.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 203/405 (50%), Positives = 267/405 (65%), Gaps = 31/405 (7%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
MG+GFRL KW SP+QSH T S+ SS S RG E S N ARLSFLS +SE+ +
Sbjct: 1 MGVGFRLTPKWGSPMQSHSATNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKH 60
Query: 61 PVKAYTCSFVNTQTVENDYSETEEIRQKS--------TSCIGQDASS------------- 99
K++ CS Q VEND + E ++ + +G D S
Sbjct: 61 SFKSFACSSA-AQNVENDCLQMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLR 119
Query: 100 ---RSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
S L++NLD LE AD DAL+LER+IL QLG+LGAL+ FN+ LSR ++TSNVL
Sbjct: 120 ERMTSRISFLLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTLQTSNVL 179
Query: 157 DLSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARV-SEESIETSLLSLPSEA 212
DLS V TE E K + GK +V + +K +RK + R S+ +T+ LSLPS+
Sbjct: 180 DLSAVPTENTGESKTDGMLGDLTGKTVVRTGKKEERKFRRERAASDNGKKTTSLSLPSKT 239
Query: 213 LQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASL 272
+Q L +PT +R +S RR IARNEA+M++GV+V ++LERI+TTLE+E+G+ SL
Sbjct: 240 VQNNLPKPTF--VKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSL 297
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
+CWA+A G+ ++VL+Q L FGWYCR+ELIK+T LVL++ARNYRG+GI DL+QAGN+G
Sbjct: 298 SCWAEATGLDKKVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLG 357
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
+LQGAERFD TRGY+FSTYVQYWIRKS+ K+V RHARGI+IP L
Sbjct: 358 LLQGAERFDPTRGYRFSTYVQYWIRKSMLKIVERHARGIQIPYAL 402
>gi|255550882|ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 560
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 206/404 (50%), Positives = 279/404 (69%), Gaps = 28/404 (6%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTS-VRGREGSFNSARLSFLSTISEDSASYFQ 59
MG GFRLNLK P S + S+S VRGRE + +RLSFLS ISE+ +
Sbjct: 1 MGFGFRLNLKLDFPFHSPNSPSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHR 60
Query: 60 DPVKAYTCSFVNTQTVENDYSETE--------------------EIRQKSTSCIGQDASS 99
DP+K Y S+ QTVEN++S+ E E+ K + ++
Sbjct: 61 DPLKTYAYSYA-VQTVENEHSQGEGFKVNFGKRSHFGLNIIGDAEVSLKEDIFVSPSSTK 119
Query: 100 R--SDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLD 157
S F LL+ENL++LE +FADSDA +LE +IL QLGKLGALKLFN+ L+R ++T+NVL+
Sbjct: 120 ERTSRFSLLLENLNILEQSFADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVLE 179
Query: 158 LSDVHTE---EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVS-EESIETSLLSLPSEAL 213
+SDVHTE E +N + + K++V + +K +RK + R S + ++ L LPS +
Sbjct: 180 VSDVHTEIIGECNINGTSINNQIKVVVHTAKKEERKSRRERASARKGHKSPSLPLPSRPI 239
Query: 214 QEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
Q G ++PT+ S ++A S+ RRL IARNEAEM++G++V+A+LE+I+TTLE+E+ + SL+
Sbjct: 240 QSGSEKPTVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLS 299
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
CWA+AAG+ +VL+Q L+FGWYCR+ELIKSTR LVL+ ARNYRG GI DLLQAGN+GV
Sbjct: 300 CWAEAAGLDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGV 359
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
L+GAERFDHTRGY+FSTYVQYWIRKS+SK+V+R ARGI+IP L
Sbjct: 360 LEGAERFDHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTL 403
>gi|39840783|emb|CAD20832.1| sigma factor [Spinacia oleracea]
Length = 548
Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/396 (48%), Positives = 262/396 (66%), Gaps = 23/396 (5%)
Query: 1 MGMGFRLNL-KWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQ 59
MG G +LN+ + V P FTT+S STS RG+E F SARLS L+ ++S + +
Sbjct: 1 MGFGCKLNMMRCVLPSLRSPFTTNSSPPCSTSFRGKELDFGSARLSLLTIGFDESETLRK 60
Query: 60 DPVKAYTCSFVNTQTVENDYSETEE-IRQKSTSCIGQDASSRSD---------------- 102
D ++ + S TVENDYS E I ++S + D SD
Sbjct: 61 DTLRPHAGSSSVPLTVENDYSNLETTISKRSCKDLISDTEVLSDRDVSVYVRSVQSCSAS 120
Query: 103 -FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV 161
F LM N+++LE+ +DS+ L+LE++IL QLG+LGAL+LF++ LSRI+ S DL +
Sbjct: 121 HFHTLMANINLLENKVSDSELLKLEKDILVQLGRLGALQLFHACLSRIIDMS---DLPGL 177
Query: 162 HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPT 221
TE+ K N +D + K LV SKRK +RKL+ R + S + + SE+ E
Sbjct: 178 ITEDGKANVRKDNELKKKLVFSKRKEERKLRQERRLQAST-SKRCACKSESSIESSIHHV 236
Query: 222 IFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV 281
+ +A + +RGRR IA+NEAEMS+G++VVA LE++K TLEKE+GKA SLNCWA+AAG+
Sbjct: 237 VSTAAKKTKARGRRAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGI 296
Query: 282 SERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
E+VL+ L FGWYCR+EL+KS R LVL+L+R YRGLG+ DL+QAGN+G+LQGAERFD
Sbjct: 297 DEKVLQHDLHFGWYCRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFD 356
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
HTRGY+FSTYVQYWIRK++S++V+RH RGIK+P L
Sbjct: 357 HTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPTTL 392
>gi|449461399|ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
gi|449507267|ref|XP_004162982.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
Length = 559
Score = 323 bits (828), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 185/408 (45%), Positives = 251/408 (61%), Gaps = 35/408 (8%)
Query: 1 MGMGFRLNLKWVSPVQSHFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQD 60
MG FR NL+W +Q+H S +LS + +GRE +FNS RLSF S+I E+ S ++
Sbjct: 1 MGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRE 60
Query: 61 PVKAYTCSFVNTQTVENDYSETEEIRQKS------------------------TSCIGQD 96
+K YTC QT ND EEI S +SC
Sbjct: 61 TLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTRPSKVEDNFSSCTSLP 120
Query: 97 ASSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVL 156
S F +LMENLDVLE TF +S L LER+I+ QL KLGAL+ FN+ LSR +KTS+
Sbjct: 121 TGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFH 180
Query: 157 DLSDV-------HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLP 209
D S + H QK ND D + V S +K R+ R + + + + L
Sbjct: 181 DSSGLPIEGGEDHNVNQKTNDQND----NVTVYSAKKAGRRSVKKRAMDNADKIASRLLT 236
Query: 210 SEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKA 269
+ A++E + + T+FS +++ NS RRL +A NEAEMS GV+VVANLERI+ TLEKESG+
Sbjct: 237 TRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRI 296
Query: 270 ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
AS++CWA+AA V + L++ L FG +CR+EL++ST LV+FLA+ YR G+P DL+QAG
Sbjct: 297 ASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAG 356
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
+GVLQG ERFD RG++ STY+QYWIRKS+S++VAR++RGI+IP L
Sbjct: 357 ALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSL 404
>gi|356565804|ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 551
Score = 304 bits (778), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 188/402 (46%), Positives = 259/402 (64%), Gaps = 41/402 (10%)
Query: 1 MGMGFRLN--LKWVSPVQS-HFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASY 57
+G GF LN L++ + + H FT S LS +S RE FN RLSF ST E+ +
Sbjct: 3 LGFGFGLNPRLRYCLLLHTPHSFTNSPLCLSPSSAGVRETCFNFTRLSFPSTFYEEGEAL 62
Query: 58 FQDPVKAYTCSFVNTQTVENDYSETEEIR----QKSTSCIGQ----------DASSRSD- 102
+D + + S +T+END EE + ++S S + + + S+ S
Sbjct: 63 QKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLSSVHKMIDNTQMPFGEVSTVSKK 122
Query: 103 --------FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSN 154
FRLLMENL VLE TF DS+ALRLE+ I+ QLGKLGAL+LFN LSR + TS
Sbjct: 123 FESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIILQLGKLGALELFNVCLSRSLGTSL 182
Query: 155 VLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSL--LSLPSEA 212
V + +D K++D +D K++V S +K + K + R E + T++ SL +A
Sbjct: 183 VSNYAD------KVDDYKD----KVVVQSSKKKENKTRRKR---EFVSTAVSSQSLTLKA 229
Query: 213 LQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASL 272
QE L + +RA N++ +R+ +A+ EAEMSKGV+V+A LE+I+T +E+++ + ASL
Sbjct: 230 NQEDLLGFSASLVKRAPNTKNKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASL 289
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
+ WA+A+GV E+VL++ L G+YC++ELI+STR LVL+LAR YRG+GI DLLQAG VG
Sbjct: 290 STWAEASGVDEKVLQKLLHRGYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQAGYVG 349
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
VLQGAERFD TRGYKFSTYVQYWIRKSI ++VAR+ARGI IP
Sbjct: 350 VLQGAERFDSTRGYKFSTYVQYWIRKSILRVVARYARGIVIP 391
>gi|7363220|emb|CAB83107.1| sigma factor 3 [Sinapis alba]
Length = 567
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 167/349 (47%), Positives = 230/349 (65%), Gaps = 25/349 (7%)
Query: 41 SARLSFLSTISEDSASYFQD-PVKAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDASS 99
++R SFLS+I E S S+ +D P+KA C+ + T EN Y E ++ ++ C+ D S
Sbjct: 76 ASRWSFLSSIKEGSRSHRRDHPLKACGCA---SATAENVYVELKDPKENIGMCLVGDQMS 132
Query: 100 RSD----------FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRI 149
++ + LL +NL LE TF D+LR+ER+I+ Q+ KLGA +LFN+ LSR
Sbjct: 133 SAEKAHLSRSMLQYNLLGKNLLALEQTFVALDSLRMERDIMLQMRKLGAAELFNTCLSRS 192
Query: 150 VKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLP 209
+S L D T E + +++ K V S RK ++K +T + S S
Sbjct: 193 RVSSATSCLPDTGTPELVDDTTQEQ---KTFVHSTRKLRKKARTGNGDQGSSTIS----- 244
Query: 210 SEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKA 269
S EG+ P + + R +R I+RNEAEMS+GV++VA++ERI+T LE+E+GK
Sbjct: 245 SRTTWEGIDVPRV---RKPSKYRKKRERISRNEAEMSQGVKIVADMERIRTKLEEETGKV 301
Query: 270 ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
AS++CWA+AAG+++++L +L FGWYCR+EL+KSTR LVLFLARNYRGLGI DL+QAG
Sbjct: 302 ASMSCWAEAAGMNQKLLMHNLHFGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAG 361
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
VGVLQGAERFDHTRGYKFSTYV+YWIRKS+S MV+RHARG+ IP +
Sbjct: 362 YVGVLQGAERFDHTRGYKFSTYVRYWIRKSMSTMVSRHARGVHIPASII 410
>gi|357436347|ref|XP_003588449.1| RNA polymerase sigma-B factor [Medicago truncatula]
gi|355477497|gb|AES58700.1| RNA polymerase sigma-B factor [Medicago truncatula]
Length = 549
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 183/397 (46%), Positives = 249/397 (62%), Gaps = 26/397 (6%)
Query: 1 MGM--GFRLNLKW-VSPVQSH----FFTTSSCRLSSTSVRG-REGSFNSARLSFLSTISE 52
MG+ GFRLN K S V H FF+ S LSS+S G RE FN RLS LST+ E
Sbjct: 1 MGLCFGFRLNTKLRYSTVPLHHSSPFFSNSHIFLSSSSSAGGRETLFNPVRLSLLSTVYE 60
Query: 53 DSASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQ-----KSTSCIGQ--DAS----SRS 101
+ + +D K + S + E D + E+ + +S S + + D S S
Sbjct: 61 EGETLQKDFRKTFAFSSA-LEAPEKDLLQGGELTKVNKGKRSLSSVHEMIDNSHLPFEES 119
Query: 102 DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDV 161
F LLMENL VLE TFADS+ALRLE+ I+ QL KLGAL+LFN L+ TS + + +
Sbjct: 120 HFGLLMENLGVLEETFADSEALRLEKNIILQLEKLGALELFNVCLTTSFGTSCISNCTHK 179
Query: 162 ---HTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEG-L 217
EE K N D + GK++V S ++ ++ + + SI S SLP + QE L
Sbjct: 180 VLEQVEENKRNHKVDDYTGKVIVHSSKR--KENRRRKRGSVSIAPSSRSLPLDDNQEDPL 237
Query: 218 KQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQ 277
+ +RA N++ +R IA+ E EMSKGV+V+A LE+I+T +E+++ + SL+ WA+
Sbjct: 238 RSSPASFVKRASNTKNKRAVIAQREVEMSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAE 297
Query: 278 AAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGA 337
+GV E+VL+Q L G+YCR+ELI+STR LVL+ AR YRG+GI DLLQ G +GVLQGA
Sbjct: 298 TSGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGA 357
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
ERFD T+GY+FSTYVQYWIRKS+S+MVA++ARGI +P
Sbjct: 358 ERFDSTKGYRFSTYVQYWIRKSMSRMVAKYARGITVP 394
>gi|297820128|ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297323785|gb|EFH54206.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 568
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 174/366 (47%), Positives = 238/366 (65%), Gaps = 16/366 (4%)
Query: 14 PVQSHFFTTSSCRLSSTS--VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVN 71
P+ H+ + C +S VR SF + R SFLS++ E+S Y +DP+KA C+
Sbjct: 53 PLIKHWLSLLRCDQTSFPIFVRIPVSSFVATRWSFLSSVKEESRIYQKDPLKA--CASSA 110
Query: 72 TQTVENDYSETEEIRQK-STSCIGQDASSRS--DFRLLMENLDVLESTFADSDALRLERE 128
T EN + E ++ ++ + SSRS + LL +NL LE TF D+ R+ER+
Sbjct: 111 PYTAENVFLELKDPKENIGVGSAEKSCSSRSMLQYNLLAKNLLALEETFVALDSARMERD 170
Query: 129 ILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGK 188
I+ Q+GKLGA LF + LSR +S LSD TE ++ ++ V S+RK K
Sbjct: 171 IMLQMGKLGAADLFKTCLSRSRGSSVASCLSDT-TELVGTTPNQ-----QVFVSSRRKLK 224
Query: 189 RKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKG 248
+K + + V+ E+ + L + + P + R R +R I++NEAEMS G
Sbjct: 225 KKARRSTVTAENGDQGSLPMGLRTTWNNIDVPRV---RRPPKYRKKRERISKNEAEMSTG 281
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLV 308
V++VA++ERI+T LE+ESGK ASL+CWA+AAG++E++L ++L +GWYCR+EL+KSTR LV
Sbjct: 282 VKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLV 341
Query: 309 LFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368
LFLARNYRGLGI DL+QAG VGVLQGAERFDHTRGYKFSTYVQYWIRKS+S MV+RHA
Sbjct: 342 LFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSMMVSRHA 401
Query: 369 RGIKIP 374
RG+ IP
Sbjct: 402 RGVHIP 407
>gi|312281919|dbj|BAJ33825.1| unnamed protein product [Thellungiella halophila]
Length = 562
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 165/332 (49%), Positives = 219/332 (65%), Gaps = 29/332 (8%)
Query: 57 YFQDPVKAYTCSFVNTQTVENDYSETEEIRQKSTSCIGQDAS------SRS--DFRLLME 108
Y + P+KA C+ T EN Y E ++ + KS + Q +S SRS + LL +
Sbjct: 85 YQKYPLKACGCASATPCTAENVYVELKDPK-KSIGVVEQMSSAEKANLSRSMLQYNLLGK 143
Query: 109 NLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSD------VH 162
NL LE TF D+LR+ER+I+ Q+GKLGA +LF + LSR +S LSD V
Sbjct: 144 NLLALEETFVSLDSLRMERDIMLQMGKLGATELFKTCLSRSRGSSVTSCLSDTGTELVVA 203
Query: 163 TEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTI 222
TEEQ+ VPS+RK K+K + + +S + L + S + P +
Sbjct: 204 TEEQQ-----------TFVPSRRKLKKKARRSSLSTGKGDQGSLLIGSRTTWNDIDAPRL 252
Query: 223 FSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS 282
++ R +R I+RNEAEMS G ++VA++ERI+T LE+ESGK AS++CWA+AAG++
Sbjct: 253 ---RKSSKYRKKRERISRNEAEMSAGAKIVADMERIRTKLEEESGKVASMSCWAEAAGMN 309
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
E +L ++L +GWYCR+EL+KSTR LVLFL+RNYRGLGI DL+QAGNVGVLQGAERFDH
Sbjct: 310 EILLMRNLHYGWYCRDELLKSTRSLVLFLSRNYRGLGIAHEDLIQAGNVGVLQGAERFDH 369
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
TRGYKFSTYVQYWIRKS+S MV+RHARG+ IP
Sbjct: 370 TRGYKFSTYVQYWIRKSMSMMVSRHARGVYIP 401
>gi|15232364|ref|NP_190960.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA polymerase sigma factor sigC; Short=Sigma factor
C; Short=Sigma-C; AltName: Full=RNA polymerase sigma
factor sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
Precursor
gi|2353175|gb|AAB69386.1| sigma factor 3 [Arabidopsis thaliana]
gi|2463554|dbj|BAA22530.1| SigC [Arabidopsis thaliana]
gi|5478585|dbj|BAA82450.1| sigma factor SigC [Arabidopsis thaliana]
gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis thaliana]
gi|133778870|gb|ABO38775.1| At3g53920 [Arabidopsis thaliana]
gi|332645638|gb|AEE79159.1| RNApolymerase sigma-subunit C [Arabidopsis thaliana]
Length = 571
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 170/351 (48%), Positives = 232/351 (66%), Gaps = 21/351 (5%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVEND-YSETEEIRQKST 90
VR S + R SFLS++ E+S Y D +KA C+ V+ T +N+ Y E ++ ++
Sbjct: 73 VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKEN-- 130
Query: 91 SCIGQDASSRS-------DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFN 143
IG ++ RS + LL +NL LE TF D++R+ER+I+ Q+GKLGA +LF
Sbjct: 131 --IGVGSAERSYSSRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFK 188
Query: 144 SHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIET 203
+ LSR +S LSD TE ++ ++ V S+RK K+K + + V+ E+ +
Sbjct: 189 TCLSRYRGSSITSCLSDT-TELVDTTPNQ-----QVFVSSRRKVKKKARRSSVTAENGDQ 242
Query: 204 SLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLE 263
S L + + P + R R +R I+RNE EMS GV++VA++ERI+T LE
Sbjct: 243 SSLPIGLRTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLE 299
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KSTR LVLFLARNYRGLGI
Sbjct: 300 EESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHE 359
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
DL+QAG VGVLQGAERFDHTRGYKFSTYVQYWIRKS+S MV+RHARG+ IP
Sbjct: 360 DLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIP 410
>gi|2398853|dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 571
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 232/351 (66%), Gaps = 21/351 (5%)
Query: 32 VRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVEND-YSETEEIRQKST 90
VR S + R SFLS++ E+S Y D +KA C+ V+ T +N+ Y E ++ ++
Sbjct: 73 VRIPMTSVVATRWSFLSSVKEESRIYQNDSLKACGCASVSPYTAQNNVYVELKDPKEN-- 130
Query: 91 SCIGQDASSRS-------DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFN 143
IG ++ RS + LL +NL LE TF D++R+ER+I+ Q+GKLGA +LF
Sbjct: 131 --IGVGSAERSYSSRSMLQYNLLAKNLLALEETFVALDSVRMERDIMLQMGKLGAAELFK 188
Query: 144 SHLSRIVKTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIET 203
+ LSR +S LSD TE ++ ++ V S+RK K+K + + V+ E+ +
Sbjct: 189 TCLSRYRGSSITSCLSDT-TELVDTTPNQ-----QVFVSSRRKVKKKARRSSVTAENGDQ 242
Query: 204 SLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLE 263
S L + + P + R R +R I+RNE EMS GV++VA++ERI+T LE
Sbjct: 243 SSLPIGLRTTWNNIDVPRV---RRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLE 299
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KSTR LVLFLARNYRG+GI
Sbjct: 300 EESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGMGIAHE 359
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
DL+QAG VGVLQGAERFDHTRGYKFSTYVQYWIRKS+S MV+RHARG+ IP
Sbjct: 360 DLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIP 410
>gi|22135904|gb|AAM91534.1| sigma factor SigC [Arabidopsis thaliana]
Length = 291
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 97/130 (74%), Positives = 117/130 (90%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
MS GV++VA++ERI+T LE+ESGK ASL+CWA AAG++E++L ++L +GWYCR+EL+KST
Sbjct: 1 MSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRDELVKST 60
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
R LVLFLARNYRGLGI DL+QAG VGVLQGAERFDHTRGYKFSTYVQYWIRKS+S MV
Sbjct: 61 RSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRKSMSTMV 120
Query: 365 ARHARGIKIP 374
+RHARG+ IP
Sbjct: 121 SRHARGVHIP 130
>gi|218197356|gb|EEC79783.1| hypothetical protein OsI_21197 [Oryza sativa Indica Group]
Length = 557
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/288 (38%), Positives = 171/288 (59%), Gaps = 25/288 (8%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 124 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYES 183
Query: 153 -----SNVLDLS-DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
N++ L ++ EEQ + ++V S + +RKLK + SE+ S +
Sbjct: 184 EFSLPGNIIKLDPEIPLEEQNV---------VVIVRSGKSQERKLKRMKASEKG---SRV 231
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
S+ + + + + F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 232 SVKTPSRKSKKSSSSQFIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 289
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 290 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 349
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
QAG +GVL GAE+FD +G KFSTYV+YWIRK++ ++A ++ I++P
Sbjct: 350 QAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQLP 397
>gi|297605001|ref|NP_001056480.2| Os05g0589200 [Oryza sativa Japonica Group]
gi|255676623|dbj|BAF18394.2| Os05g0589200, partial [Oryza sativa Japonica Group]
Length = 464
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 172/288 (59%), Gaps = 25/288 (8%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 124 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 183
Query: 153 -----SNVLDLS-DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S +
Sbjct: 184 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKG---SRV 231
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
S+ + + + + F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 232 SVKTPSRKSKKSSSSQFIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 289
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 290 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 349
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
QAG +GVL GAE+FD +G KFSTYV+YWIRK++ ++A ++ I++P
Sbjct: 350 QAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQLP 397
>gi|47777365|gb|AAT37999.1| putative RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 882
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 171/288 (59%), Gaps = 25/288 (8%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 449 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 508
Query: 153 -----SNVLDLS-DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S+
Sbjct: 509 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKGSRVSVK 559
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
+ ++ + Q F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 560 TPSRKSKKSSSSQ---FIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 614
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 615 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 674
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
QAG +GVL GAE+FD +G KFSTYV+YWIRK++ ++A ++ I++P
Sbjct: 675 QAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQLP 722
>gi|49328110|gb|AAT58808.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 799
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 112/288 (38%), Positives = 171/288 (59%), Gaps = 25/288 (8%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 366 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 425
Query: 153 -----SNVLDLS-DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S+
Sbjct: 426 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKGSRVSVK 476
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
+ ++ + Q F AE N GRR +I R ++ + ++ ANLE+I+ L K+
Sbjct: 477 TPSRKSKKSSSSQ---FIAEWK-NYPGRRRSIVREQSALLVTIKECANLEKIRENLLKD- 531
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G S WA+AAG+ E +L+ L G+ CRE L+ +T LV ++A+ Y G+G F DLL
Sbjct: 532 GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLVTTEWLVKYIAKTYAGMGTAFEDLL 591
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
QAG +GVL GAE+FD +G KFSTYV+YWIRK++ ++A ++ I++P
Sbjct: 592 QAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLALLAENSGVIQLP 639
>gi|357128317|ref|XP_003565820.1| PREDICTED: uncharacterized protein LOC100824063 [Brachypodium
distachyon]
Length = 989
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 169/287 (58%), Gaps = 19/287 (6%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSR--IVKTSNV 155
SS ++ LLM+N+ LES+ A D + LER IL + +LGAL+LFN+ SR + +TS+
Sbjct: 551 SSSLEYSLLMQNIHALESSLAGQDLVLLERNILVHIEQLGALQLFNASRSRAIVTQTSHE 610
Query: 156 LDLS--------DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLS 207
D + D T + +D +++V S + +RKLK R E+ + +
Sbjct: 611 SDFALPGSVAEFDPVTPLGEESD-------RLIVRSGKSQERKLKRIRSLEKVSGVCVKA 663
Query: 208 LPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESG 267
+ + + F AE N GRR +I R ++ + ++ ANLE+I+ + KE G
Sbjct: 664 SSRKQKKSCKSSSSQFIAEWK-NYPGRRRSIVREQSALLMTIKECANLEKIRENMVKE-G 721
Query: 268 KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+ S + WA+AAGV E VLK L G++CRE L+ +T LV ++AR Y G+G F DLLQ
Sbjct: 722 QEVSYDRWAKAAGVDEAVLKSRLQAGYFCRERLLVTTEWLVKYIARTYTGMGTAFEDLLQ 781
Query: 328 AGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
AG +GVL GA+RFD +G KFSTYV+YWIRK++ ++A ++ I++P
Sbjct: 782 AGKMGVLNGADRFDSNKGCKFSTYVKYWIRKAMLALLAENSGVIQLP 828
>gi|222632746|gb|EEE64878.1| hypothetical protein OsJ_19735 [Oryza sativa Japonica Group]
Length = 1012
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 115/312 (36%), Positives = 172/312 (55%), Gaps = 49/312 (15%)
Query: 98 SSRSDFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT----- 152
SS ++ LLM+N+ VLES+ A D +RLER+IL + +LGALK FN+ +SR T
Sbjct: 555 SSNLEYNLLMQNIQVLESSLAGKDLVRLERDILVHIERLGALKSFNASISRATLTQTYEL 614
Query: 153 -----SNVLDLS-DVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLL 206
+++ L ++ EEQ ND ++V S + +RKLK + SE+ S+
Sbjct: 615 EFSLPGDIIKLDPEIPLEEQ--NDV-------VIVRSGKSQERKLKRMKASEKGSRVSVK 665
Query: 207 SLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEM---------SKGVQV------ 251
+ ++ + Q F AE N GRR +I R ++ + GVQ
Sbjct: 666 TPSRKSKKSSSSQ---FIAEWK-NYPGRRRSIVREQSALLVTIKRRSADAGVQWKASAAE 721
Query: 252 ---------VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIK 302
ANLE+I+ L K+ G S WA+AAG+ E +L+ L G+ CRE L+
Sbjct: 722 ERRRASAAECANLEKIRENLLKD-GSEVSHASWAKAAGIDEALLRSRLQEGYCCRERLLV 780
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+T LV ++A+ Y G+G F DLLQAG +GVL GAE+FD +G KFSTYV+YWIRK++
Sbjct: 781 TTEWLVKYIAKTYAGMGTAFEDLLQAGKMGVLNGAEKFDSQKGCKFSTYVKYWIRKAMLA 840
Query: 363 MVARHARGIKIP 374
++A ++ I++P
Sbjct: 841 LLAENSGVIQLP 852
>gi|162463525|ref|NP_001105185.1| sigma factor protein [Zea mays]
gi|20159761|gb|AAM12034.1| sigma factor protein [Zea mays]
Length = 568
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 125/394 (31%), Positives = 199/394 (50%), Gaps = 46/394 (11%)
Query: 12 VSPVQSHFFTTSSCRLSSTSV-----------RGREGSFNSARLSFLSTISEDSASYFQD 60
+ P QSH +SS S+ R R+G+ A S + I+ED +S
Sbjct: 33 LPPKQSHHPLNGGRAISSESLAALAWHFLLRRRSRDGATALASSSGVLQIAEDKSSAAN- 91
Query: 61 PVKAYTCSFVNTQ-TVENDYSETEEIRQKSTSCIGQDASSRSD---------FRLLMENL 110
T V+ + + ND + +R ++ S + ++ SS D +RLLM+NL
Sbjct: 92 ----LTKHKVSAERKLLNDALDRTGVRYETESWMDEETSSWMDRDLTDSDLRYRLLMQNL 147
Query: 111 DVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT------SNVLDLSDVHTE 164
+ LE++ D LE +IL+QLG LG+ FN+ ++R V ++LD D E
Sbjct: 148 EELETSLVGKD---LEMDILEQLGALGS---FNASVARGVSALHGRPDGSLLD--DPEPE 199
Query: 165 EQKMNDSR-DYHMGKILVPSKRKGKRKLKTARVS--EESIETSLLSLPSEALQEGLKQPT 221
++ + D M ++V S + +RKL+ R S E+ TS+ P ++ K +
Sbjct: 200 TTPLDAGQEDSQM--VVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKSRKASS 257
Query: 222 IFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV 281
+ G+R I R ++ + ++ A LE+I+ + KE G+ S + WA+AAGV
Sbjct: 258 SQFISEWKSHPGQRRIIVREQSALLSTIKECAGLEKIREKMVKE-GQEVSYHRWAEAAGV 316
Query: 282 SERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
E L L G+ CR+ L+ +T LV +AR Y G+G DLLQAG +GVL GAE+FD
Sbjct: 317 DEAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQAGKMGVLDGAEKFD 376
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+G +FSTYV+YWIRK + ++A ++ +P
Sbjct: 377 SRKGCRFSTYVKYWIRKGMLALLAENSGVTLLPA 410
>gi|413946740|gb|AFW79389.1| sigma factor protein [Zea mays]
Length = 568
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 198/393 (50%), Gaps = 44/393 (11%)
Query: 12 VSPVQSHFFTTSSCRLSSTSV-----------RGREGSFNSARLSFLSTISEDSASYFQD 60
+ P QSH +SS S+ R R+G+ A S + I+ED +S
Sbjct: 33 LPPKQSHHPLNGGRAISSESLAALAWHFLLRRRSRDGATALASSSGVLQIAEDKSSAAN- 91
Query: 61 PVKAYTCSFVNTQ-TVENDYSETEEIRQKSTSCIGQDASSRSD---------FRLLMENL 110
T V+ + + ND + +R ++ S + ++ SS D +RLLM+NL
Sbjct: 92 ----LTKHKVSAERKLLNDALDRTGVRYETESWMDEETSSWMDRDLTDSDLRYRLLMQNL 147
Query: 111 DVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKT------SNVLDLSDVHTE 164
+ LE++ D LE +IL+QLG LG+ FN+ ++R V ++LD D E
Sbjct: 148 EELETSLVGKD---LEMDILEQLGALGS---FNASVARGVSALHGRPDGSLLD--DPEPE 199
Query: 165 EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVS--EESIETSLLSLPSEALQEGLKQPTI 222
++ ++ ++V S + +RKL+ R S E+ TS+ P ++ K +
Sbjct: 200 TTPLDAGQEDSQ-VVVVRSGKSQERKLRRMRASSDEKGSRTSVKVNPPRRPKKSRKASSS 258
Query: 223 FSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS 282
+ G+R I R ++ + ++ A LE+I+ + KE G+ S + WA+AAGV
Sbjct: 259 QFISEWKSHPGQRRIIVREQSALLSTIKECAGLEKIREKMVKE-GQEVSYHRWAEAAGVD 317
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
E L L G+ CR+ L+ +T LV +AR Y G+G DLLQAG +GVL GAE+FD
Sbjct: 318 EAELVSRLQAGYCCRDRLLVTTEWLVRCIARTYTGMGTALDDLLQAGKMGVLDGAEKFDS 377
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+G +FSTYV+YWIRK + ++A ++ +P
Sbjct: 378 RKGCRFSTYVKYWIRKGMLALLAENSGVTLLPA 410
>gi|242089059|ref|XP_002440362.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
gi|241945647|gb|EES18792.1| hypothetical protein SORBIDRAFT_09g030350 [Sorghum bicolor]
Length = 529
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 155/287 (54%), Gaps = 13/287 (4%)
Query: 103 FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSH----------LSRIVKT 152
+ LLM+NL+ LE++ A D LE +IL + +LGAL+ F++ L+
Sbjct: 83 YGLLMQNLEELETSLAGKDLKILENDILAHIQQLGALRSFDASTAVGATLLDTLTHDQPD 142
Query: 153 SNVLD--LSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPS 210
S++LD + + E +++ ++V S + +RKLK R SE+ S+ P
Sbjct: 143 SSLLDQQIIEFDPETTPLDEEEQEDSQVVVVRSGKSEERKLKRVRASEKGSRISVKVNPR 202
Query: 211 EALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA 270
+ K + + GRR I R ++ + ++ A+LE+I+ + KE G+
Sbjct: 203 RPKKSSRKASSSQFISEWKSHPGRRRIIVREQSALLATIKECASLEKIREKMVKE-GQEV 261
Query: 271 SLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGN 330
S + WA+AAG+ E L L G+ CRE L+ +T LV +AR+Y G+G DLLQAG
Sbjct: 262 SYHRWAEAAGMDEAELMSRLQTGYCCRERLLVTTEWLVRCIARSYTGMGTALDDLLQAGK 321
Query: 331 VGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
+GVL GAE+FD +G +FSTYV+YWIRK + ++A ++ +P +
Sbjct: 322 MGVLDGAEKFDTRKGCRFSTYVKYWIRKGMLALLAENSGVTLLPARM 368
>gi|223975681|gb|ACN32028.1| unknown [Zea mays]
gi|413946741|gb|AFW79390.1| hypothetical protein ZEAMMB73_416951 [Zea mays]
Length = 565
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 190/365 (52%), Gaps = 37/365 (10%)
Query: 33 RGREGSFNSARLSFLSTISED---SASYFQDPVKAYTCSFVNTQTVENDYSETEEIRQKS 89
R R+G+ A S + I+ED +A+ + V A + + ND + +R ++
Sbjct: 62 RSRDGATALASSSGVLQIAEDKSSAANLTKHKVSA-------ERKLLNDALDRTGVRYET 114
Query: 90 TSCIGQDASSRSD---------FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALK 140
S + ++ SS D +RLLM+NL+ LE++ D LE +IL+QLG LG+
Sbjct: 115 ESWMDEETSSWMDRDLTDSDLRYRLLMQNLEELETSLVGKD---LEMDILEQLGALGS-- 169
Query: 141 LFNSHLSRIVKT------SNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTA 194
FN+ ++R V ++LD D E ++ ++ ++V S + +RKL+
Sbjct: 170 -FNASVARGVSALHGRPDGSLLD--DPEPETTPLDAGQEDSQ-VVVVRSGKSQERKLRRM 225
Query: 195 RVS--EESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVV 252
R S E+ TS+ P ++ K + + G+R I R ++ + ++
Sbjct: 226 RASSDEKGSRTSVKVNPPRRPKKSRKASSSQFISEWKSHPGQRRIIVREQSALLSTIKEC 285
Query: 253 ANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLA 312
A LE+I+ + KE G+ S + WA+AAGV E L L G+ CR+ L+ +T LV +A
Sbjct: 286 AGLEKIREKMVKE-GQEVSYHRWAEAAGVDEAELVSRLQAGYCCRDRLLVTTEWLVRCIA 344
Query: 313 RNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIK 372
R Y G+G DLLQAG +GVL GAE+FD +G +FSTYV+YWIRK + ++A ++
Sbjct: 345 RTYTGMGTALDDLLQAGKMGVLDGAEKFDSRKGCRFSTYVKYWIRKGMLALLAENSGVTL 404
Query: 373 IPVPL 377
+P +
Sbjct: 405 LPARM 409
>gi|449454538|ref|XP_004145011.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
gi|449473951|ref|XP_004154029.1| PREDICTED: RNA polymerase sigma factor sigB-like [Cucumis sativus]
Length = 580
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 128/205 (62%), Gaps = 13/205 (6%)
Query: 179 ILVPSKRKGKRKLKTARVSEESIETSLLSLPS--------EALQE-GLKQPTIFSAERAL 229
I V SKR+ +RK + R +E+++ TS+LS S ++QE P + RA
Sbjct: 220 ITVKSKRQTERKARRTRAAEKTV-TSVLSFKSGSSSRKKRNSVQEVDYSDPLRYL--RAT 276
Query: 230 NSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQH 289
+ R LT A E E+S+G+Q + LER++ L + G + WA AAGV++R L++
Sbjct: 277 TNTSRLLT-ATEELELSEGIQDLLKLERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKR 335
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFS 349
L +G C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFS
Sbjct: 336 LNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFS 395
Query: 350 TYVQYWIRKSISKMVARHARGIKIP 374
TY +WI++++ K ++ +R I++P
Sbjct: 396 TYAHWWIKQAVRKFLSDQSRTIRLP 420
>gi|356506634|ref|XP_003522082.1| PREDICTED: uncharacterized protein LOC100794777 [Glycine max]
Length = 196
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 121/225 (53%), Gaps = 63/225 (28%)
Query: 103 FRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSNVLDLSDVH 162
FR+LMENL VLE TF DS+ALRLE+ I+ QLGK+GAL+LFN LSR V T V + +
Sbjct: 34 FRMLMENLCVLEETFVDSEALRLEKAIILQLGKVGALELFNVCLSRSVGTLLVSNYA--- 90
Query: 163 TEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTI 222
K++D ++ K++V S +K + K +
Sbjct: 91 ---IKVDDYKE----KVVVQSSKKKENKTR------------------------------ 113
Query: 223 FSAERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS 282
R R +A LE+I+T +E+++ ASL+ WA+ +GV
Sbjct: 114 ---------RKREFVLA--------------ELEKIRTAIEEDTKPVASLSTWAETSGVD 150
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
E+VL+Q L G+YC +ELI+S+R LV++LAR YRG+GI DLLQ
Sbjct: 151 EKVLQQLLHCGYYCWDELIQSSRSLVVYLARKYRGMGIALDDLLQ 195
>gi|15223259|ref|NP_172330.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
gi|75219074|sp|O22056.2|SIGB_ARATH RecName: Full=RNA polymerase sigma factor sigB; Short=Sigma factor
B; Short=Sigma-B; AltName: Full=Protein ABERRANT
CHLOROPLAST 1; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigA; Short=Sigma factor A; Short=Sigma-A; Flags:
Precursor
gi|6664315|gb|AAF22897.1|AC006932_14 T27G7.22 [Arabidopsis thaliana]
gi|9802550|gb|AAF99752.1|AC003981_2 F22O13.2 [Arabidopsis thaliana]
gi|2443357|dbj|BAA22427.1| SigB [Arabidopsis thaliana]
gi|2597831|emb|CAA75584.1| sigma factor [Arabidopsis thaliana]
gi|2879922|dbj|BAA24825.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
gi|5478446|dbj|BAA82449.1| sigma factor SigB [Arabidopsis thaliana]
gi|133778838|gb|ABO38759.1| At1g08540 [Arabidopsis thaliana]
gi|332190182|gb|AEE28303.1| RNApolymerase sigma subunit 2 [Arabidopsis thaliana]
Length = 572
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 96/140 (68%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q + G
Sbjct: 271 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGT 330
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+KFSTY +
Sbjct: 331 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 390
Query: 355 WIRKSISKMVARHARGIKIP 374
WI++++ K ++ +R I++P
Sbjct: 391 WIKQAVRKSLSDQSRMIRLP 410
>gi|2353173|gb|AAB69385.1| sigma factor 2 [Arabidopsis thaliana]
Length = 574
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 96/140 (68%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q + G
Sbjct: 273 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGT 332
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+KFSTY +
Sbjct: 333 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 392
Query: 355 WIRKSISKMVARHARGIKIP 374
WI++++ K ++ +R I++P
Sbjct: 393 WIKQAVRKSLSDQSRMIRLP 412
>gi|26452898|dbj|BAC43527.1| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis
thaliana]
Length = 572
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 96/140 (68%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + SG+ + WA AAGV ++ L+Q + G
Sbjct: 271 KLLTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGT 330
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+KFSTY +
Sbjct: 331 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 390
Query: 355 WIRKSISKMVARHARGIKIP 374
WI++++ K ++ +R I++P
Sbjct: 391 WIKQAVRKSLSDQSRMIRLP 410
>gi|7363218|emb|CAB83106.1| sigma factor 2 [Sinapis alba]
Length = 575
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 96/140 (68%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L AR E ++S+G+Q + LER++ L + G + + WA AAGV ++ L++ + G
Sbjct: 271 KLLTAREEQQLSEGIQDLLKLERLQAELTERCGHQPTFSQWASAAGVDKKTLRKRITHGT 330
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++ +IKS LV+ +A+NY+G G+ F DL+Q G G+++GAE+FD T+G+KFSTY +
Sbjct: 331 QCKDRMIKSNIRLVISIAKNYQGAGMDFQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 390
Query: 355 WIRKSISKMVARHARGIKIP 374
WI++++ K ++ +R I++P
Sbjct: 391 WIKQAVRKSLSDQSRMIRLP 410
>gi|168012500|ref|XP_001758940.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens]
gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens]
gi|162690077|gb|EDQ76446.1| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens]
Length = 579
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 101/146 (69%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L AR E ++S +Q + LE IK+ LE+E G+ A++ W++A G+ + + L G
Sbjct: 275 KLLTAREEVDLSHQIQDLLKLENIKSNLEREIGRNATIGEWSRAVGMEQNAFEARLKKGR 334
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ +++++ S LV+ +A+NY+G G+ DL+Q G++G+++GAE+FD T+G+KFSTY +
Sbjct: 335 FAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQEGSMGLVRGAEKFDPTKGFKFSTYAHW 394
Query: 355 WIRKSISKMVARHARGIKIPVPLFLI 380
WIR+++++ +A +R I++P+ L+ +
Sbjct: 395 WIRQAVTRSIADQSRTIRLPIHLYEV 420
>gi|297843640|ref|XP_002889701.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
gi|297335543|gb|EFH65960.1| hypothetical protein ARALYDRAFT_470915 [Arabidopsis lyrata subsp.
lyrata]
Length = 572
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 95/140 (67%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L R E E+S G+Q + LER++T L + G+ + WA AAGV ++ L++ + G
Sbjct: 271 KLLTVREEHELSAGIQDLLKLERLQTELTERCGRQPTFAQWASAAGVDQKSLRKRIHHGT 330
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD T+G+KFSTY +
Sbjct: 331 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHW 390
Query: 355 WIRKSISKMVARHARGIKIP 374
WI++++ K ++ +R I++P
Sbjct: 391 WIKQAVRKSLSDQSRMIRLP 410
>gi|148909485|gb|ABR17840.1| unknown [Picea sitchensis]
Length = 495
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 96/144 (66%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + L+RI+ ++++GK +L WA+ GV ++ LK L G
Sbjct: 196 RLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGR 255
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+++I LV+ +A+NY+ G+ DL+QAG++G+++ AE+FD++RG+KFSTY +
Sbjct: 256 DSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYW 315
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR+SI+K + +R I++PV +
Sbjct: 316 WIRQSITKALTEQSRTIRLPVHIV 339
>gi|407327703|dbj|BAM45409.1| sigma factor 2 [Marchantia polymorpha]
Length = 615
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 96/144 (66%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L + E E+++G+Q + +E +K L ++ G+ +L WA+A G L+ + G
Sbjct: 316 KLLTSSEEIELAEGIQDLLRVESVKNDLREQMGREPTLMEWAKAVGTERHSLESRIKSGQ 375
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++ ++ S LV+ +A+ Y+G G+ DL+Q G++G+++GAE+FDHTRG+KFSTY +
Sbjct: 376 ACKDRMVNSNLRLVVSIAKRYQGRGMTIQDLIQEGSMGLIRGAEKFDHTRGFKFSTYAHW 435
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV ++
Sbjct: 436 WIRQAITRAIADQSRTIRLPVHVY 459
>gi|148907004|gb|ABR16646.1| unknown [Picea sitchensis]
Length = 592
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 95/141 (67%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + L+RI+ ++++GK +L WA+ GV ++ LK L G
Sbjct: 293 RLLTASEEVELSRGIQDLIKLDRIRAKYKEKTGKEPTLAQWAEVIGVDQKTLKMRLEVGR 352
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+++I LV+ +A+NY+ G+ DL+QAG++G+++ AE+FD++RG+KFSTY +
Sbjct: 353 DSFDKIINCNLRLVISVAKNYQNRGLSLQDLIQAGSMGLMRSAEKFDYSRGFKFSTYAYW 412
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR+SI+K + +R I++PV
Sbjct: 413 WIRQSITKALTEQSRTIRLPV 433
>gi|85813983|emb|CAD20831.2| sigma factor [Spinacia oleracea]
Length = 575
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 95/140 (67%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL + E E+S G+Q + LE++ L+ GK+ S WA AAG+ +R L++ L G
Sbjct: 276 RLLTSSEETELSAGIQDLLKLEKLHDELKVRFGKSPSFVQWAAAAGIDQRTLRRRLNHGT 335
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +
Sbjct: 336 FCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 395
Query: 355 WIRKSISKMVARHARGIKIP 374
WI++++ K ++ +R I++P
Sbjct: 396 WIKQAVRKSLSDQSRTIRLP 415
>gi|162458688|ref|NP_001104923.1| sigma factor SIG2A [Zea mays]
gi|4336606|gb|AAD17854.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 94/142 (66%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + + WA AAGV E+ L++ L +
Sbjct: 235 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNY 294
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ F DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 295 GIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRFSTYS 354
Query: 353 QYWIRKSISKMVARHARGIKIP 374
+WI++++ K V+ ++ ++P
Sbjct: 355 HWWIKQAMRKSVSEQSQIFRLP 376
>gi|125585746|gb|EAZ26410.1| hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Length = 497
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 93/145 (64%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 193 GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 252
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C+ ++KS LV+ +AR + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 253 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYS 312
Query: 353 QYWIRKSISKMVARHARGIKIPVPL 377
+WI+++I K V + I++P +
Sbjct: 313 HWWIKQAIRKSVLEQTQIIRLPAHM 337
>gi|413920797|gb|AFW60729.1| sigma factor SIG2A [Zea mays]
Length = 539
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 94/142 (66%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + + WA AAGV E+ L++ L +
Sbjct: 235 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELIEYNGGQPTFSQWATAAGVDEKTLRKRLNY 294
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ F DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 295 GIYCKNRMVTSNVRLVISIAREFEGPGMDFYDLIQEGMQGLIRGAEKFDSSKGFRFSTYS 354
Query: 353 QYWIRKSISKMVARHARGIKIP 374
+WI++++ K V+ ++ ++P
Sbjct: 355 HWWIKQAMRKSVSEQSQIFRLP 376
>gi|356509511|ref|XP_003523491.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 558
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 129/228 (56%), Gaps = 18/228 (7%)
Query: 157 DLSDVHTE----EQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIE--TSLLSLPS 210
DL H E +++++DS I V S+R+ +RK K R +E++ TS S
Sbjct: 179 DLEPSHEELERLQEQLSDS-------IAVRSRRQTERKAKRVRATEKATTNFTSFKPGSS 231
Query: 211 EALQEGLKQPTIFSAE----RALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKES 266
+ Q +S R S R LT E ++S G+Q + LE+I+ L +
Sbjct: 232 SRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPT-EEIKLSAGIQDLLKLEKIQEDLAERF 290
Query: 267 GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLL 326
G + WA AGV ++ L++ L +G +C++++IKS LV+ +A+NY+G G+ DL+
Sbjct: 291 GSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLV 350
Query: 327 QAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Q G G+++GAE+FD T+G+KFSTY +WI++++ K ++ +R I++P
Sbjct: 351 QEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLP 398
>gi|255565968|ref|XP_002523972.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
gi|223536699|gb|EEF38340.1| RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
Length = 569
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 119/202 (58%), Gaps = 7/202 (3%)
Query: 179 ILVPSKRKGKRKLKTARVSEESIETSLLSLP--SEALQEGLKQPTIFSAE----RALNSR 232
I V S+R+ +RK + AR E++ + + P + + G Q +S R S
Sbjct: 209 IAVRSRRQTERKARRARAVEKAASSVVSVKPGSTSKKKRGSLQEVDYSDPLRYLRGTTST 268
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R LT A E E+S +Q + LER++ L + G + WA AAGV +R L++ +
Sbjct: 269 SRLLT-ASEELELSAAIQDLLKLERLQEELAERYGGQPTFAQWAAAAGVDQRTLRKRINH 327
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY
Sbjct: 328 GTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYA 387
Query: 353 QYWIRKSISKMVARHARGIKIP 374
+WI++++ K ++ +R I++P
Sbjct: 388 HWWIKQAVRKSLSDQSRTIRLP 409
>gi|108707415|gb|ABF95210.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|215695353|dbj|BAG90544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 343
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 93/145 (64%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 39 GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 98
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C+ ++KS LV+ +AR + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 99 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYS 158
Query: 353 QYWIRKSISKMVARHARGIKIPVPL 377
+WI+++I K V + I++P +
Sbjct: 159 HWWIKQAIRKSVLEQTQIIRLPAHM 183
>gi|115452175|ref|NP_001049688.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japonica Group]
gi|32351880|dbj|BAC78529.1| plastid sigma factor 2B [Oryza sativa Japonica Group]
gi|108707414|gb|ABF95209.1| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|113548159|dbj|BAF11602.1| Os03g0271100 [Oryza sativa Japonica Group]
gi|215704451|dbj|BAG93885.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765869|dbj|BAG87566.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 540
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 92/143 (64%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 236 GRRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 295
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C+ ++KS LV+ +AR + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 296 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYS 355
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WI+++I K V + I++P
Sbjct: 356 HWWIKQAIRKSVLEQTQIIRLPA 378
>gi|296090195|emb|CBI40014.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 95/140 (67%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + LE+++ LE+ G + WA AAGV ++ L++ +G
Sbjct: 276 RLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGI 335
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +
Sbjct: 336 RCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 395
Query: 355 WIRKSISKMVARHARGIKIP 374
WI++++ K ++ +R I++P
Sbjct: 396 WIKQAVRKSLSDQSRTIRLP 415
>gi|225436223|ref|XP_002273602.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 578
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 95/140 (67%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + LE+++ LE+ G + WA AAGV ++ L++ +G
Sbjct: 279 RLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGI 338
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +
Sbjct: 339 RCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHW 398
Query: 355 WIRKSISKMVARHARGIKIP 374
WI++++ K ++ +R I++P
Sbjct: 399 WIKQAVRKSLSDQSRTIRLP 418
>gi|224126061|ref|XP_002319746.1| predicted protein [Populus trichocarpa]
gi|222858122|gb|EEE95669.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 92/133 (69%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+S+G+Q + LERI+ L++ G S WA AAGV + L++ L +G C++++I
Sbjct: 275 EVELSEGIQDLLKLERIEEELKERFGGEPSFAQWAAAAGVDQLTLRKRLNYGILCKDKMI 334
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
KS LV+ +A+NY+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +WI++++
Sbjct: 335 KSNVRLVISIAKNYQGTGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVR 394
Query: 362 KMVARHARGIKIP 374
K ++ +R I++P
Sbjct: 395 KSLSDRSRTIRLP 407
>gi|357112914|ref|XP_003558250.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 537
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 90/143 (62%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
RRL A+ E E+S+G+Q LE I+ + +G + WA AAG E L++ L++
Sbjct: 233 ARRLLTAKQEVELSEGIQDFLKLEAIQKEVAHYNGGEPTFTQWAAAAGTDENTLRKRLSY 292
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 293 GIYCKNMMVKSNVRLVISIAKEFEGPGTEFSDLIQEGMQGLIRGAEKFDASKGFRFSTYS 352
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WI+++I K V + I++P
Sbjct: 353 HWWIKQAIRKSVLEQTQIIRLPT 375
>gi|62734062|gb|AAX96171.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|125589330|gb|EAZ29680.1| hypothetical protein OsJ_13741 [Oryza sativa Japonica Group]
Length = 563
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 91/142 (64%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 260 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 353 QYWIRKSISKMVARHARGIKIP 374
+WI++++ K V+ ++ ++P
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLP 401
>gi|297611772|ref|NP_001067832.2| Os11g0448400 [Oryza sativa Japonica Group]
gi|62701714|gb|AAX92787.1| Sigma-70 region 3, putative [Oryza sativa Japonica Group]
gi|108864350|gb|ABA93405.2| Sigma-70 region 3 family protein, expressed [Oryza sativa Japonica
Group]
gi|255680064|dbj|BAF28195.2| Os11g0448400 [Oryza sativa Japonica Group]
Length = 564
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 91/142 (64%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 260 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 353 QYWIRKSISKMVARHARGIKIP 374
+WI++++ K V+ ++ ++P
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLP 401
>gi|32351878|dbj|BAC78528.1| plastid sigma factor 2A [Oryza sativa Japonica Group]
Length = 564
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 91/142 (64%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 260 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 319
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 320 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 379
Query: 353 QYWIRKSISKMVARHARGIKIP 374
+WI++++ K V+ ++ ++P
Sbjct: 380 HWWIKQAMRKSVSEQSQIFRLP 401
>gi|218194307|gb|EEC76734.1| hypothetical protein OsI_14770 [Oryza sativa Indica Group]
Length = 563
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 91/142 (64%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GRRL A+ E E S+G+Q + LE I+ L + +G + WA AAGV ER L++ L
Sbjct: 259 GRRLLTAKEEVEFSEGIQDLLKLEAIQAELAEYNGGQPTFAQWATAAGVDERTLRKRLDH 318
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 319 GIYCKNRMVTSNVRLVISIAREFEGPGMELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 378
Query: 353 QYWIRKSISKMVARHARGIKIP 374
+WI++++ K V+ ++ ++P
Sbjct: 379 HWWIKQAMRKSVSEQSQIFRLP 400
>gi|125543279|gb|EAY89418.1| hypothetical protein OsI_10924 [Oryza sativa Indica Group]
Length = 540
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 91/143 (63%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A+ E E S+G+Q + LE I+ L +G + + WA+AAG E L++ L +
Sbjct: 236 GWRLLTAKQEVEFSQGIQDLLKLEAIQKELAHYNGGEPTFSQWAEAAGTDENTLRKRLNY 295
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G C+ ++KS LV+ +AR + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 296 GISCKNTMVKSNVRLVISIAREFEGPGMEFSDLIQEGIQGLVRGAEKFDASKGFRFSTYS 355
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WI+++I K V + I++P
Sbjct: 356 HWWIKQAIRKSVLEQTQIIRLPA 378
>gi|308804840|ref|XP_003079732.1| SigA (ISS) [Ostreococcus tauri]
gi|116058189|emb|CAL53378.1| SigA (ISS) [Ostreococcus tauri]
Length = 525
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 105/172 (61%), Gaps = 3/172 (1%)
Query: 212 ALQEGLKQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA 270
A++ G K+P+ S L G L A E E++K +Q + +LE I+ L +E+G
Sbjct: 190 AMRIGNKRPSTDSMRSYLKDIGSVTLLNAGQEVELAKRIQDLMHLESIRENLIEETGPGV 249
Query: 271 SLN--CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
L+ WA AAG++ L+Q L G + E+I++ LV+ +A+ Y + F DL+Q
Sbjct: 250 ELSESQWAAAAGLNVSALRQRLHDGKAAKNEMIQANLRLVVSIAKKYANTNMSFQDLIQE 309
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
G VG+++GAE+FD RGYKFSTY +WIR+++++ ++ +R I++PV LF I
Sbjct: 310 GCVGLIRGAEKFDFQRGYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEI 361
>gi|242041441|ref|XP_002468115.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
gi|241921969|gb|EER95113.1| hypothetical protein SORBIDRAFT_01g039810 [Sorghum bicolor]
Length = 528
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 90/143 (62%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + +G + + WA AAG E L++ L
Sbjct: 224 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNGGEPTFSQWAAAAGTDENTLRRRLNH 283
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 284 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQEGMQGLIRGAEKFDASKGFRFSTYS 343
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WI+++I K V + I++P
Sbjct: 344 HWWIKQAIRKSVLEQTQIIRLPA 366
>gi|357467593|ref|XP_003604081.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355493129|gb|AES74332.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 572
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 92/133 (69%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E + S+G+Q + LE+++ L ++ G + WA AGV ++ L++ L +G +C+E++I
Sbjct: 280 EIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMI 339
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
KS LV+ +A+NY+G G+ DL+Q G G+++GAE++D ++G+KFSTY +WI++++
Sbjct: 340 KSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVR 399
Query: 362 KMVARHARGIKIP 374
K ++ +R I++P
Sbjct: 400 KSLSVQSRTIRLP 412
>gi|427724795|ref|YP_007072072.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356515|gb|AFY39238.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 379
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ LE+ + + WA+AAG+ + +
Sbjct: 75 LQEIGRIRLLRAEEEIELARKIADLLELERMREQLEEHESRVPTDKEWAEAAGMPLKDFR 134
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 135 RRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 194
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 195 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 225
>gi|224144900|ref|XP_002325455.1| predicted protein [Populus trichocarpa]
gi|222862330|gb|EEE99836.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 92/140 (65%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+S+G+Q + LERI+ L++ G + WA AA V + L++ L +
Sbjct: 265 RLLSATEEVELSEGIQDLLKLERIEEELKERFGGKPTFAQWAAAARVDQITLRKRLNYAI 324
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
C++++IKS LV+ +A+NY+G G+ DL+Q G G+++G E+FD ++G+KFSTY +
Sbjct: 325 LCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGVEKFDASKGFKFSTYAHW 384
Query: 355 WIRKSISKMVARHARGIKIP 374
WIR+++ + ++ +R I++P
Sbjct: 385 WIRQAVRRSLSDQSRTIRLP 404
>gi|145347899|ref|XP_001418397.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578626|gb|ABO96690.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 344
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 93/144 (64%), Gaps = 2/144 (1%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN--CWAQAAGVSERVLKQHLAFGWYC 296
A E E++K +Q + +LE I+ L +E+G A + WA AAG++ + L Q L G
Sbjct: 32 AGQEVELAKRIQDLMHLESIRENLVEETGPGAEVTDYQWASAAGLNVQALHQRLRDGKSA 91
Query: 297 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWI 356
+ E+I++ LV+ +A+ Y + F DL+Q G VG+++GAE+FD RGYKFSTY +WI
Sbjct: 92 KNEMIQANLRLVVSIAKKYANSNMSFQDLIQEGCVGLIRGAEKFDFQRGYKFSTYAHWWI 151
Query: 357 RKSISKMVARHARGIKIPVPLFLI 380
R+++++ ++ +R I++PV LF I
Sbjct: 152 RQAVTRSISDQSRTIRLPVHLFEI 175
>gi|323388685|gb|ADX60147.1| SIGMA70-like transcription factor [Zea mays]
Length = 428
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 90/145 (62%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + + + + WA AAG E L++ L
Sbjct: 124 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNH 183
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 184 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYS 243
Query: 353 QYWIRKSISKMVARHARGIKIPVPL 377
+WI+++I K V + I++P +
Sbjct: 244 HWWIKQAIRKSVLEQTQIIRLPAHM 268
>gi|414591842|tpg|DAA42413.1| TPA: sigma factor SIG2B [Zea mays]
gi|414866057|tpg|DAA44614.1| TPA: sigma factor SIG2B [Zea mays]
gi|414872289|tpg|DAA50846.1| TPA: sigma factor SIG2B [Zea mays]
Length = 528
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 89/143 (62%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + + + + WA AAG E L++ L
Sbjct: 224 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNH 283
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 284 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYS 343
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WI+++I K V + I++P
Sbjct: 344 HWWIKQAIRKSVLEQTQIIRLPA 366
>gi|357156833|ref|XP_003577591.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 552
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 89/142 (62%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GR+L A+ E E+S G+Q + LE I+ L + SG + WA AAG E+ L++ LA
Sbjct: 248 GRKLLTAKEEVELSNGIQDLLKLEAIQAELAEYSGCQPTFPQWAAAAGTDEKTLRKRLAH 307
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G Y + ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 308 GIYSKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 367
Query: 353 QYWIRKSISKMVARHARGIKIP 374
+WI++++ K V+ + ++P
Sbjct: 368 HWWIKQAMRKSVSEQTQIFRLP 389
>gi|162458864|ref|NP_001104924.1| sigma-like factor2B [Zea mays]
gi|4336608|gb|AAD17855.1| sigma factor SIG2B [Zea mays]
Length = 527
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 89/143 (62%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
G RL A E E S+G+Q + LE I+ + + + + + WA AAG E L++ L
Sbjct: 223 GPRLLTAEQEVEFSEGIQDLLKLEAIQKEVAQYNAGEPTFSQWAAAAGTDENTLRRRLNH 282
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G YC+ ++KS LV+ +A+ + G G+ FSDL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 283 GVYCKNRMVKSNVRLVISIAKEHEGPGMEFSDLIQDGMQGLIRGAEKFDASKGFRFSTYS 342
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WI+++I K V + I++P
Sbjct: 343 HWWIKQAIRKSVLEQTQIIRLPA 365
>gi|307152414|ref|YP_003887798.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982642|gb|ADN14523.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 377
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Query: 216 GLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
G K+P + R L GR RL A E E+++ + + LER++ L + G+ S
Sbjct: 59 GKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRNLGRYPSDK 118
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
WAQ G+ ++ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+
Sbjct: 119 EWAQQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGL 178
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 179 IRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 223
>gi|168009564|ref|XP_001757475.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691169|gb|EDQ77532.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 591
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 98/148 (66%), Gaps = 2/148 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
+L A E +S+ +Q + LE++K+ L++E G+ S+ W++A G+ + + +
Sbjct: 287 KLLTASEEVALSRKIQARDLLVLEKVKSDLQREIGREPSIGEWSRAVGMEQNAFELRVKE 346
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G Y +++++ S LV+ + +NY+G G+ DL+Q G++G+++GAE+FD +G+KFSTY
Sbjct: 347 GRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSMGLIRGAEKFDPDKGFKFSTYA 406
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR+++++ +A +R I++P+ L+ +
Sbjct: 407 HWWIRQAVTRAIADQSRIIRLPIHLYEV 434
>gi|1588486|prf||2208419B RNA polymerase sigma factor
Length = 391
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 128/230 (55%), Gaps = 21/230 (9%)
Query: 151 KTSNVLDLSDVHTEEQKMNDSRDYHMGKILVPSKRKGKRKLKTARVSEESIETSLLSLPS 210
+T N D+ E ++ + DY ++ +P+K+ RK KT+R E + +
Sbjct: 27 QTRNEGDIDYSALAEAQIKEGTDY--VELTLPTKKS--RKAKTSRRKETATK-------- 74
Query: 211 EALQEGLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGK 268
K+P + R L GR RL A E E+++ + + LER++ L + +
Sbjct: 75 -------KKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERMREQLTEHESR 127
Query: 269 AASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
+ WA+AAG+ + ++ L G ++++++S LV+ +A+ Y G+ F DL+Q
Sbjct: 128 VPTDKEWAEAAGMPLKDFRRRLFHGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQE 187
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 188 GSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 237
>gi|170078618|ref|YP_001735256.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002]
gi|169886287|gb|ACB00001.1| RNA polymerase sigma factor [Synechococcus sp. PCC 7002]
Length = 375
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 93/144 (64%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L + + + WA+AAG+ + ++ L G
Sbjct: 78 RLLRAEEEIELARKIADLLELERMREQLTEHESRVPTDKEWAEAAGMPLKDFRRRLFHGR 137
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 138 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 197
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 198 WIRQAITRAIADQSRTIRLPVHLY 221
>gi|218438948|ref|YP_002377277.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218171676|gb|ACK70409.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 376
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 100/165 (60%), Gaps = 2/165 (1%)
Query: 216 GLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
G K+P + R L GR RL A E E+++ + + LER++ L + G+ S
Sbjct: 58 GKKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERLREKLRRSLGRYPSDK 117
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
WA+ G+ ++ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+
Sbjct: 118 EWAEQVGMELPAFQRRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGL 177
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 178 IRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 222
>gi|300867798|ref|ZP_07112441.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
gi|300334215|emb|CBN57613.1| RNA polymerase sigma factor RpoD [Oscillatoria sp. PCC 6506]
Length = 391
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 90/144 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L +E + N WA A G+ + L G
Sbjct: 94 RLLRADEEIELARKIADLLELERIREQLCEELERDPKDNEWANAVGMPLPAFRHRLHLGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLY 237
>gi|18404292|ref|NP_565856.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA polymerase sigma factor sigF, chloroplastic;
Short=Sigma factor F; Short=Sigma-F; AltName:
Full=Protein SINGLET OXYGEN-LINKED DEATH ACTIVATOR 8;
AltName: Full=RNA polymerase sigma factor sig6;
Short=Atsig6; Short=Sigma factor 6; Flags: Precursor
gi|7209640|dbj|BAA92288.1| SigF [Arabidopsis thaliana]
gi|7688083|emb|CAB89775.1| sigma factor-like protein [Arabidopsis thaliana]
gi|16604647|gb|AAL24116.1| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20197948|gb|AAD31584.2| putative RNA polymerase sigma-70 factor [Arabidopsis thaliana]
gi|20259557|gb|AAM14121.1| putative RNA polymerase sigma-70 factor protein [Arabidopsis
thaliana]
gi|330254238|gb|AEC09332.1| RNApolymerase sigma-subunit F [Arabidopsis thaliana]
Length = 547
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 95/147 (64%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 245 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRG 304
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY
Sbjct: 305 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 364
Query: 354 YWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR+SI K + +++R I++P ++++
Sbjct: 365 WWIRQSIRKSIFQNSRTIRLPENVYML 391
>gi|312282671|dbj|BAJ34201.1| unnamed protein product [Thellungiella halophila]
Length = 547
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 118/206 (57%), Gaps = 6/206 (2%)
Query: 180 LVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALN-----SRGR 234
+V SKR+ +R+ K R + + S +P + + K F + AL +
Sbjct: 187 IVRSKRQLERRAKNRRAPKSNNMDSEGYVP-QKINAKKKMKQGFDTDDALQLFLWGPETK 245
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 246 QLLTAKEEAELIAHIQHLIKLEKVKTKLESQNGCEPTIGEWAEAMGLSSPVLKSEIHRGR 305
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY +
Sbjct: 306 SSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYW 365
Query: 355 WIRKSISKMVARHARGIKIPVPLFLI 380
WIR+SI K + +++R I++P ++++
Sbjct: 366 WIRQSIRKSIFQNSRTIRLPENVYML 391
>gi|326518320|dbj|BAJ88189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326533296|dbj|BAJ93620.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 552
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 233 GRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
GR+L A+ E E+S G+Q + LE I+ L + +G + WA AAG E L++ L
Sbjct: 248 GRKLLTAKEEVELSNGIQDLLKLEAIQGELAEYNGGQPTFPQWAAAAGTDENTLRKRLDH 307
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +C+ ++ S LV+ +AR + G G+ DL+Q G G+++GAE+FD ++G++FSTY
Sbjct: 308 GIHCKNRMVTSNVRLVISIAREFEGPGLELYDLIQEGMQGLIRGAEKFDASKGFRFSTYS 367
Query: 353 QYWIRKSISKMVARHARGIKIP 374
+WI++++ K V+ + ++P
Sbjct: 368 HWWIKQAMRKSVSEQTQIFRLP 389
>gi|168009782|ref|XP_001757584.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691278|gb|EDQ77641.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 95/144 (65%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
+L A E +S+ +Q + LE+I+ L+++ G+ +L+ W+QA + + L+ + G
Sbjct: 282 KLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLSEWSQAVSLDQTSLELRVKEGR 341
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+++L+ S LV+ + +NY+G G+ DL+Q G++G+++GAE+FD GYKFSTY +
Sbjct: 342 SAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGLIRGAEKFDPEMGYKFSTYATW 401
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR+++++ +A +R I++PV ++
Sbjct: 402 WIRQAVTRAIADQSRIIRLPVHIY 425
>gi|6273430|emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
Length = 487
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 95/147 (64%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S VLK + G
Sbjct: 185 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRG 244
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY
Sbjct: 245 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 304
Query: 354 YWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR+SI K + +++R I++P ++++
Sbjct: 305 WWIRQSIRKSIFQNSRTIRLPENVYML 331
>gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 317
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 94/143 (65%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ S+ VQ + NLE++K L ++ + SL WAQAA +S+R LK+ L
Sbjct: 20 RVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQRQLKKQLLL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +++++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEQSRTIRLPI 162
>gi|428778228|ref|YP_007170015.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428692507|gb|AFZ45801.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 394
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 110/191 (57%), Gaps = 3/191 (1%)
Query: 191 LKTARVSEESIETSLLSLPSEALQEGLKQP--TIFSAERALNSRGR-RLTIARNEAEMSK 247
L+ A SEE+ ++ + E +E K+ T S L GR RL A E E+++
Sbjct: 49 LEVAEASEETSTKAVTATKEENSKEDSKKKSYTEDSIRLYLQEIGRIRLLRADEEIELAR 108
Query: 248 GVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPL 307
+ + LER +T LE G + WA+ + + ++ L G +E++++S L
Sbjct: 109 KIADLLELERKRTELEATIGCEPTDEEWAEEVDMPLQKFRRRLMLGRRAKEKMVQSNLRL 168
Query: 308 VLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARH 367
V+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A
Sbjct: 169 VVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQ 228
Query: 368 ARGIKIPVPLF 378
+R I++PV L+
Sbjct: 229 SRTIRLPVHLY 239
>gi|411117176|ref|ZP_11389663.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713279|gb|EKQ70780.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 382
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 91/144 (63%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ +L+++ + WA A ++ + L G
Sbjct: 85 RLLRADEEIELARKIADLLELERIRESLQQQLDRTPQDAEWANAVNMTLPAFRHRLHLGR 144
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 145 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 204
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 205 WIRQAITRAIADQSRTIRLPVHLY 228
>gi|334118497|ref|ZP_08492586.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459504|gb|EGK88117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 388
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 93/151 (61%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ L +E + + WA A ++ +
Sbjct: 84 LQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVDMALPAFR 143
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 144 HRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 203
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 204 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 234
>gi|170078438|ref|YP_001735076.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169886107|gb|ACA99820.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 318
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 94/143 (65%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ S+ VQ + NLE++K L ++ + SL WAQAA +S+R LK+ L
Sbjct: 20 RVPLLTHEEEVLYSRRVQKMVNLEKLKAELAEKQDQEPSLKEWAQAANLSQRELKKQLLL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +++++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GKQAKQKMVEANLRLVVSVAKKYIKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|428203576|ref|YP_007082165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981008|gb|AFY78608.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 374
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 90/144 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI L K G+ + WA+A + ++ L G
Sbjct: 77 RLLRAEEEIELARKIADLLELERIYEQLRKRLGRFPNNREWAEAVEMELPAFQRRLYLGR 136
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 137 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 196
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 197 WIRQAITRAIADQSRTIRLPVHLY 220
>gi|449499005|ref|XP_004160694.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase sigma factor
sigB-like [Cucumis sativus]
Length = 286
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 83/120 (69%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
LER++ L + G + WA AAGV++R L++ L +G C++++IKS LV+ + +N
Sbjct: 7 LERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIXKN 66
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y+G G+ DL+Q G G+++GAE+FD ++G+KFSTY +WI++++ K ++ +R I++P
Sbjct: 67 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 126
>gi|428320499|ref|YP_007118381.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244179|gb|AFZ09965.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 388
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 93/151 (61%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ L +E + + WA A ++ +
Sbjct: 84 LQEIGRIRLLRADEEIELARKIADLLELERVREQLLEEYNREPKDSEWANAVEMALPAFR 143
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 144 HRLHVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 203
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 204 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 234
>gi|113478384|ref|YP_724445.1| RNA polymerase sigma factor RpoD [Trichodesmium erythraeum IMS101]
gi|110169432|gb|ABG53972.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 386
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + ++ WA A + K
Sbjct: 82 LQEIGRIRLLRADEEIELARKIADLLELERIREELIYHLDREPQVSEWANAVDMELPKFK 141
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 142 RRLILGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 201
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 202 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 232
>gi|297827203|ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
Length = 546
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 94/147 (63%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ EAE+ +Q + LE++KT LE ++G ++ WA+A G+S LK + G
Sbjct: 244 KQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPDLKSEIHRG 303
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + LV+ +A+ Y+ G+ F DLLQ G++G+++ E+F G +F+TY
Sbjct: 304 RSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAY 363
Query: 354 YWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR+SI K + +++R I++P ++++
Sbjct: 364 WWIRQSIRKSIFQNSRTIRLPENVYML 390
>gi|119512308|ref|ZP_01631394.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119463021|gb|EAW43972.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 391
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 90/144 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L+++ + WA+A + + L G
Sbjct: 94 RLLRADEEIELARKIADLLELERVRDRLQEQLEREPEYREWAEAVQIPLPAFRYRLHIGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLY 237
>gi|218245044|ref|YP_002370415.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|257058068|ref|YP_003135956.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|218165522|gb|ACK64259.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256588234|gb|ACU99120.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 379
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 90/144 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ + + G+ + W+QA + ++ L G
Sbjct: 82 RLLRAEEEIELARKIADLLELERIREKMTEHMGRFPTDLEWSQAINMEWHAFQRRLYLGR 141
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+++++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 142 KAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 201
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 202 WIRQAITRAIADQSRTIRLPVHLY 225
>gi|159903037|ref|YP_001550381.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9211]
gi|159888213|gb|ABX08427.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9211]
Length = 425
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + NLE I E E+G S WA + +
Sbjct: 121 LQEIGRIRLLRPDEEIELARKIADLLNLEEIAIQFESENGHYPSKKEWAALVEMPVIRFR 180
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 181 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 240
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 241 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 271
>gi|224068757|ref|XP_002326192.1| predicted protein [Populus trichocarpa]
gi|222833385|gb|EEE71862.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 88/141 (62%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ E E+ +Q + NLE +K LE + G+ +L WAQA G+S VLK L G
Sbjct: 233 KQLLTAKEEFELIAQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSG 292
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + +V+ +A+ Y+ G+ DLLQ G VG+++ E+F G +F+TY
Sbjct: 293 NRSREKLINANLRMVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAY 352
Query: 354 YWIRKSISKMVARHARGIKIP 374
+WIR++I+K + +H+R I++P
Sbjct: 353 WWIRQTITKAIFQHSRTIRLP 373
>gi|354567212|ref|ZP_08986382.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353543513|gb|EHC12971.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 393
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 91/144 (63%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L+++ + + WA+A + + L G
Sbjct: 96 RLLRADEEIELARKIADLLELERVRDRLQQQLEREPQYSEWAEAVQLPLPQFRHRLHVGR 155
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 156 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 215
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 216 WIRQAITRAIADQSRTIRLPVHLY 239
>gi|428225120|ref|YP_007109217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985021|gb|AFY66165.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 381
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 90/144 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L ++ + + WAQ ++ + L G
Sbjct: 84 RLLRADEEIELARKIADLLELERIRADLAEQLEREPTDAEWAQKVDMALPAFRHRLHLGR 143
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 144 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 203
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 204 WIRQAITRAIADQSRTIRLPVHLY 227
>gi|440682269|ref|YP_007157064.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679388|gb|AFZ58154.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 392
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 89/144 (61%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L+ + + WA+A + + L G
Sbjct: 95 RLLRADEEIELARKIADLLELERVRDRLQDQLEREPQFKEWAEAVELPLPTFRYRLHVGR 154
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 155 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 214
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 215 WIRQAITRAIADQSRTIRLPVHLY 238
>gi|428299682|ref|YP_007137988.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428236226|gb|AFZ02016.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 389
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 90/144 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L ++ + + WA+A V + L G
Sbjct: 92 RLLRADEEIELARKIADLLELERIREKLSQQLDRDPKDSEWAEAVQVPLPQFRYRLHIGR 151
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 211
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 212 WIRQAITRAIADQSRTIRLPVHLY 235
>gi|303279757|ref|XP_003059171.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459007|gb|EEH56303.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 587
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 92/150 (61%), Gaps = 5/150 (3%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN-----CWAQAAGVSERVLKQHL 290
L E E++ +Q + LE ++ LE+E+ + + WA AA V+ER LK+ L
Sbjct: 268 LLTGEQEVELAMRIQDLVYLEGVREQLEEEAKRRKQTSEVSNFDWAIAANVTERELKERL 327
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
G + ++I++ LV+ +A+ Y + F DL+Q G VG+++GAE+FD RGYKFST
Sbjct: 328 DAGKRAKNQMIQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFDFKRGYKFST 387
Query: 351 YVQYWIRKSISKMVARHARGIKIPVPLFLI 380
Y +WIR+++++ ++ +R I++PV LF I
Sbjct: 388 YAHWWIRQAVTRSISDQSRTIRLPVHLFEI 417
>gi|428771678|ref|YP_007163468.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685957|gb|AFZ55424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 386
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 93/145 (64%), Gaps = 1/145 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFG 293
RL A E E+++ + + +LE I++TL + G+ + WA A+ + R + L G
Sbjct: 88 RLLRAEEEIELARQIADLLDLEYIRSTLIEHLGRVPTDEEWAIASDMPNMRQFNRRLHIG 147
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY
Sbjct: 148 RKAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 207
Query: 354 YWIRKSISKMVARHARGIKIPVPLF 378
+WIR++I++ +A +R I++PV L+
Sbjct: 208 WWIRQAITRAIADQSRTIRLPVHLY 232
>gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium]
Length = 591
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV--LKQHLAFGWYCREE 299
E E+SK V ++ +LE+ + + +E GK+ + + WAQ G + V L++H+ G +E
Sbjct: 296 EIELSKQVCILMDLEQFQRSFREEHGKSPTESEWAQGCGYGDDVEKLREHIRDGRKAKER 355
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
++ + LV+ +A+ Y G+ DL+Q G++G+++G E+FD RG++FSTY +WIR+S
Sbjct: 356 MVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAERGFRFSTYATWWIRQS 415
Query: 360 ISKMVARHARGIKIPV 375
I++ ++ +R I++PV
Sbjct: 416 ITRAISDSSRSIRLPV 431
>gi|254416030|ref|ZP_05029786.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177205|gb|EDX72213.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 380
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 88/144 (61%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L + + WA+ + +Q L G
Sbjct: 83 RLLRADEEIELARKIADLLELERIRDRLYDQLEREPKEGEWAKEVEMELPAFRQRLFLGR 142
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 143 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 202
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 203 WIRQAITRAIADQSRTIRLPVHLY 226
>gi|427729924|ref|YP_007076161.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365843|gb|AFY48564.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 390
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 90/144 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L ++ + + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERIRERLSEQLERDPHDSEWAEAVQLPLPAFRYRLHLGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLY 236
>gi|443325471|ref|ZP_21054165.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442794934|gb|ELS04327.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 380
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 104/178 (58%), Gaps = 2/178 (1%)
Query: 203 TSLLSLPSEALQEGLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKT 260
+ L S P + G K+P + R L GR RL A E E+++ + + LERI+
Sbjct: 49 SKLASTPRRTAERGRKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRE 108
Query: 261 TLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGI 320
+E E + S W + + R ++ L G ++++++S LV+ +A+ Y G+
Sbjct: 109 RIEDELDREISDAEWGKEVDMELRPFRRRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGL 168
Query: 321 PFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 169 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 226
>gi|33863339|ref|NP_894899.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640788|emb|CAE21243.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 320
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 94/143 (65%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE++++ LE ++G+ AS A+AAG+SE LK+ L
Sbjct: 22 RVPLLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQS 81
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 82 GRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 141
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 142 YWWIRQGITRAIAEKSRTIRLPI 164
>gi|427718031|ref|YP_007066025.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350467|gb|AFY33191.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 390
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 93/151 (61%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER++ L ++ + + WA+A + +
Sbjct: 86 LQEIGRIRLLRADEEIELARKIADLLELERVREKLSEQLDRDPKDSEWAEAVQLPLPAFR 145
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 146 YRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 205
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 206 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 236
>gi|434393235|ref|YP_007128182.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428265076|gb|AFZ31022.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 390
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + +ER++ L ++ + + WA+A +S +
Sbjct: 86 LQEIGRIRLLRADEEIELARKIAELLEMERVRERLLEQLDREPQDSEWAEAVQLSLPTFR 145
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 146 YRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 205
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 206 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 236
>gi|282896628|ref|ZP_06304643.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 390
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 89/144 (61%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLY 236
>gi|282899714|ref|ZP_06307678.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195593|gb|EFA70526.1| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 390
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 89/144 (61%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRDDLYEQLEREPEFREWAEAVKLPLPTFRYRLHVGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLY 236
>gi|33862400|ref|NP_893960.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9313]
gi|33640513|emb|CAE20302.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9313]
Length = 335
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 94/143 (65%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE++++ LE ++G+ AS A+AAG+SE LK+ L
Sbjct: 37 RVPLLSHEQEITLGRQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQS 96
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 97 GRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 157 YWWIRQGITRAIAEKSRTIRLPI 179
>gi|298491609|ref|YP_003721786.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298233527|gb|ADI64663.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 390
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 89/144 (61%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRDRLYEQLEREPQFKEWAEAVQLPLPTFRYRLHVGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLY 236
>gi|72383045|ref|YP_292400.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL2A]
gi|72002895|gb|AAZ58697.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL2A]
Length = 335
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE ++T LE + G+ +N +A AG+S LK+ L
Sbjct: 37 RVPLLSHEQEITLGRQVQDLVSLENLETELESDLGEKPDINFFADKAGISPIQLKKKLKS 96
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 97 GRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 157 YWWIRQGITRAIAEKSRSIRLPI 179
>gi|124021877|ref|YP_001016184.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962163|gb|ABM76919.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 350
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 93/143 (65%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE++++ LE ++G AS A+AAG+SE LK+ L
Sbjct: 52 RVPLLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQI 111
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 112 GRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 171
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 172 YWWIRQGITRAIAEKSRTIRLPI 194
>gi|356536959|ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 94/147 (63%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +KT L+ + G+ ++ WA+ AG++ R+L+ L G
Sbjct: 269 KQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSG 328
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI++ +V+ +A++Y+G G+ DLLQ G++G+++ E+F+ G +F Y
Sbjct: 329 NRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAF 388
Query: 354 YWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I K V RH+R I++P +F++
Sbjct: 389 WWIRQAIRKAVFRHSRTIRLPEKVFIL 415
>gi|186686393|ref|YP_001869589.1| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102]
gi|8118663|gb|AAF73062.1|AF265349_1 primary vegetative sigma factor [Nostoc punctiforme]
gi|186468845|gb|ACC84646.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 389
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 90/144 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + + WA+A + + L G
Sbjct: 92 RLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGR 151
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 211
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 212 WIRQAITRAIADQSRTIRLPVHLY 235
>gi|126661338|ref|ZP_01732404.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126617371|gb|EAZ88174.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 328
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 105/173 (60%), Gaps = 7/173 (4%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ K VQ + NL K L
Sbjct: 1 MPTANVNTKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQTMMNLLEKKEEL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ GK S+ WA+ + E+ L++ L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 AQRVGKEPSIQEWAKEVNIEEKALQKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P+
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPI 171
>gi|427705875|ref|YP_007048252.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358380|gb|AFY41102.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 391
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 90/144 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + + WA+A + + L G
Sbjct: 94 RLLRADEEIELARKIADLLELERVRERLSEQLDRDPRDSEWAEAVQLPLPAFRYRLHVGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLY 237
>gi|124025264|ref|YP_001014380.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL1A]
gi|123960332|gb|ABM75115.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. NATL1A]
Length = 420
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE E E+G S+ WA A + +
Sbjct: 114 LQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADMPLTRFR 173
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 174 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 233
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 234 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 264
>gi|428206989|ref|YP_007091342.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008910|gb|AFY87473.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 392
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 95/162 (58%), Gaps = 1/162 (0%)
Query: 218 KQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWA 276
KQ T S L GR RL A E E+++ + + LERI+ L + + WA
Sbjct: 77 KQYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERIREKLSDRLDREPQDSEWA 136
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
+A + + L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++
Sbjct: 137 EAVKQNLPAFRYRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 196
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
AE+FDH +GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 197 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 238
>gi|72383665|ref|YP_293020.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
NATL2A]
gi|72003515|gb|AAZ59317.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A]
Length = 420
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE E E+G S+ WA A + +
Sbjct: 114 LQEIGRIRLLRPDEEIELARKIADLLQLEEEAAQFESENGHFPSVKEWAVLADMPLARFR 173
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 174 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 233
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 234 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 264
>gi|124022691|ref|YP_001016998.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
gi|123962977|gb|ABM77733.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Prochlorococcus marinus str. MIT 9303]
Length = 320
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 93/143 (65%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE++++ LE ++G AS A+AAG+SE LK+ L
Sbjct: 22 RVPLLSHEQEITLGRQVQELMSLEQLESELEGKTGAPASRKELAKAAGLSELQLKKKLQS 81
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 82 GRRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 141
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 142 YWWIRQGITRAIAEKSRTIRLPI 164
>gi|254424926|ref|ZP_05038644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196192415|gb|EDX87379.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 404
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 89/144 (61%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ ++ + + WA A + ++ L G
Sbjct: 107 RLLRAEEEIELARKIADLLELERIRDEIDDQLDDEPTDADWANAVDMPLPAFRRRLYQGR 166
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 167 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 226
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 227 WIRQAITRAIADQSRTIRLPVHLY 250
>gi|22298160|ref|NP_681407.1| RNA polymerase sigma factor RpoD [Thermosynechococcus elongatus
BP-1]
gi|22294339|dbj|BAC08169.1| principal RNA polymerase sigma factor [Thermosynechococcus
elongatus BP-1]
Length = 418
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 92/149 (61%), Gaps = 5/149 (3%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA-----SLNCWAQAAGVSERVLKQH 289
RL A E E+++ + + +ER++ L +E G A + WA+ G++ +
Sbjct: 116 RLLRADEEIELARKIADLLEMERVRDRLCQELGCTAEELERNPEPWAKELGMTVPAFRHR 175
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFS 349
L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFS
Sbjct: 176 LFVGRKAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFS 235
Query: 350 TYVQYWIRKSISKMVARHARGIKIPVPLF 378
TY +WIR++I++ +A +R I++PV L+
Sbjct: 236 TYATWWIRQAITRAIADQSRTIRLPVHLY 264
>gi|17232755|ref|NP_489303.1| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120]
gi|75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD [Anabaena variabilis ATCC 29413]
gi|133465|sp|P26683.1|RPOD_NOSS1 RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|142108|gb|AAA22043.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134402|dbj|BAB76962.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|75701357|gb|ABA21033.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 390
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 90/144 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + + WA+A + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLY 236
>gi|37522141|ref|NP_925518.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35213141|dbj|BAC90513.1| principal RNA polymerase sigma factor [Gloeobacter violaceus PCC
7421]
Length = 400
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 76/107 (71%)
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
L WA+AAG++ + +A+G ++++++S LV+ +A+ Y G+ F DL+Q G++
Sbjct: 140 LRRWAEAAGIAYEQFRDRIAYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSL 199
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 200 GLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 246
>gi|428779237|ref|YP_007171023.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428693516|gb|AFZ49666.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 388
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + ++ LER +T LE G + WA+ G + +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLSELERTRTELEATIGCEPTDEEWAEEVGQALPKFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 143 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 202
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 203 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 233
>gi|428312164|ref|YP_007123141.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428253776|gb|AFZ19735.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 373
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 88/144 (61%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L + + + WA + + + L G
Sbjct: 76 RLLRADEEIELARKIADLLELERIRDRLSDQLEREPQDSEWATEVNMPLQAFRHRLYVGR 135
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 136 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 195
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 196 WIRQAITRAIADQSRTIRLPVHLY 219
>gi|428227195|ref|YP_007111292.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427987096|gb|AFY68240.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 365
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 84/134 (62%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ +Q + +E ++ E+E G+ + A A G++ER L+Q L + ++I
Sbjct: 73 EVELARHIQQLNEIEELRAQFEEEHGRRPNKAELADALGLTERQLEQRLHRSQVAKRKMI 132
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+ I+
Sbjct: 133 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQGIT 192
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 193 RTIANDARTIRLPI 206
>gi|356514352|ref|XP_003525870.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 360
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 92/144 (63%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +KT L+ + G+ ++ WA+ AG++ R+L+ L G
Sbjct: 138 KQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSG 197
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI++ +V+ +A++Y+G G+ DLLQ G++G+++ E+F+ G +F Y
Sbjct: 198 IRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAF 257
Query: 354 YWIRKSISKMVARHARGIKIPVPL 377
+WIR++I K V RH+R I++P+ L
Sbjct: 258 WWIRQAIRKAVFRHSRTIRLPINL 281
>gi|434388482|ref|YP_007099093.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428019472|gb|AFY95566.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 380
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 96/167 (57%), Gaps = 1/167 (0%)
Query: 213 LQEGLKQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAAS 271
+Q KQ T S L GR RL A E E+++ + + LER++ L + +
Sbjct: 60 VQTKKKQFTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERMREKLLNDLDREPH 119
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
WA A + + L G ++++++S LV+ +A+ Y G+ F DL+Q G++
Sbjct: 120 DREWAAVASMPLNQFRHRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSL 179
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 180 GLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 226
>gi|428773077|ref|YP_007164865.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687356|gb|AFZ47216.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 391
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFG 293
RL A E E+++ + + +LE I+ T + G+ + WA A + R + L G
Sbjct: 93 RLLRAEEEIELARQIADLLDLEYIRATQIEHLGRIPTDEEWAIACDIPNMRQFNRRLHIG 152
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY
Sbjct: 153 RRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYAT 212
Query: 354 YWIRKSISKMVARHARGIKIPVPLF 378
+WIR++I++ +A +R I++PV L+
Sbjct: 213 WWIRQAITRAIADQSRTIRLPVHLY 237
>gi|434400420|ref|YP_007134424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428271517|gb|AFZ37458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 372
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 99/167 (59%), Gaps = 2/167 (1%)
Query: 214 QEGLKQPTIFSAERA-LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAAS 271
+ G K+P + R L GR RL A E E+++ + + LERI+ + + S
Sbjct: 52 ERGRKKPYTEDSIRIYLQEIGRIRLLRAEEEIELARKIADLLELERIRERMADRLERYPS 111
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
WA+ + ++ L +G ++++++S LV+ +A+ Y G+ F DL+Q G++
Sbjct: 112 DAEWAEEVNMRLPEFRRRLFYGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSL 171
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 172 GLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 218
>gi|449017038|dbj|BAM80440.1| sigma subunit for chloroplast RNA polymerase [Cyanidioschyzon
merolae strain 10D]
Length = 721
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 88/136 (64%), Gaps = 2/136 (1%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV--LKQHLAFGWYCREE 299
E E+S+ V V+ +LER + + ++ GK+ + WA+ G E V L++H+ G +E
Sbjct: 426 EVELSRQVCVLMDLERFQKSFREQHGKSPTELEWARGCGYGEDVEALRKHIRDGRSAKER 485
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
++ + LV+ +A+ Y G+ DL+Q G++G+++G E+FD RG++FSTY +WIR+S
Sbjct: 486 MVTANLRLVVSIAKRYSNRGVALQDLIQEGSIGLIRGVEKFDAGRGFRFSTYATWWIRQS 545
Query: 360 ISKMVARHARGIKIPV 375
I++ ++ +R I++PV
Sbjct: 546 ITRAISDSSRSIRLPV 561
>gi|124026787|ref|YP_001015902.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. NATL1A]
gi|123961855|gb|ABM76638.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. NATL1A]
Length = 335
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + LE ++T LE + G+ +N +A AG+S LK+ L
Sbjct: 37 RVPLLSHEQEITLGRQVQDLVVLENLETELESDLGEKPDINFFADKAGLSPIQLKKKLKS 96
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 97 GRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 157 YWWIRQGITRAIAEKSRSIRLPI 179
>gi|352094758|ref|ZP_08955929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351681098|gb|EHA64230.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 443
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 139 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFR 198
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 199 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 258
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 259 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 289
>gi|113954073|ref|YP_731235.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
gi|113881424|gb|ABI46382.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9311]
Length = 440
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 136 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPETKEWAALVEMPVIRFR 195
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 196 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 255
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 256 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 286
>gi|332707223|ref|ZP_08427276.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332353957|gb|EGJ33444.1| RNA polymerase sigma factor RpoD-like protein [Moorea producens 3L]
gi|332651116|gb|AEE81159.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 87/144 (60%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L ++ + WA + + L G
Sbjct: 76 RLLRADEEIELARKIADLLELERVRERLSEQLEREPGDREWATEVDMELPAFRYRLHVGR 135
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 136 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 195
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 196 WIRQAITRAIADQSRTIRLPVHLY 219
>gi|148238947|ref|YP_001224334.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 7803]
gi|147847486|emb|CAK23037.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. WH 7803]
Length = 450
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 146 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFR 205
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 206 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 265
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 266 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 296
>gi|443324962|ref|ZP_21053681.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442795431|gb|ELS04799.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 328
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI--KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + NE E+ G QV A + + K+ LEK+ + SL W+++A +SE L + L
Sbjct: 30 RVPLLTNEQEIVYGKQVQAMMALLIKKSELEKQLEREISLQEWSESAQISEPELNRLLKL 89
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD +GYKFSTY
Sbjct: 90 GQRAKSKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPMKGYKFSTYA 149
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 150 YWWIRQAITRAIAQQARTIRLPI 172
>gi|220906934|ref|YP_002482245.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219863545|gb|ACL43884.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 378
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 87/144 (60%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L + + WA + + + L G
Sbjct: 81 RLLRADEEIELARKIADLLELERIREQLYDKLDREPQDQEWAGEVDMPLQSFRHRLHIGR 140
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 141 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 200
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 201 WIRQAITRAIADQSRTIRLPVHLY 224
>gi|88807657|ref|ZP_01123169.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
gi|88788871|gb|EAR20026.1| RNA polymerase sigma factor [Synechococcus sp. WH 7805]
Length = 447
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++GK WA + +
Sbjct: 143 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGKLPDTKEWAALVEMPVIRFR 202
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 203 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 262
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 263 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 293
>gi|119489756|ref|ZP_01622514.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454330|gb|EAW35480.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 391
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 89/144 (61%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L + + WA A ++ ++ L G
Sbjct: 94 RLLRADEEIELARRIADLLELERIREKLVEHNHCEPEDREWASAVDMALPEFRRRLYLGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLY 237
>gi|428307311|ref|YP_007144136.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248846|gb|AFZ14626.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 383
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER+ L+ + + + WA A + +
Sbjct: 79 LQEIGRIRLLRADEEIELARKIAELLQLERVYEQLKAQLDREPKDSEWALAVEMPLPQFR 138
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 139 HRLYLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 198
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 199 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 229
>gi|172035560|ref|YP_001802061.1| RNA polymerase sigma factor [Cyanothece sp. ATCC 51142]
gi|354554809|ref|ZP_08974112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697014|gb|ACB49995.1| group 2 sigma-70 RNA polymerase sigma factor B [Cyanothece sp. ATCC
51142]
gi|353552963|gb|EHC22356.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 328
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 104/173 (60%), Gaps = 7/173 (4%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTL 262
+P+ + KQPT +SA+ L+ GR + + +E E+ K VQ + +L K L
Sbjct: 1 MPTANVNTKTKQPT-YSADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQKMMSLLETKEEL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ GK SL WA+ + E+ L + L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 AQSLGKEPSLQEWAKEVNLEEKALTKALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P+
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPI 171
>gi|356548319|ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor rpoD [Glycine max]
Length = 574
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 92/147 (62%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +KT L+ + G+ ++ WA+ G++ R+L L G
Sbjct: 272 KQLLTLEQESQLISQIQDLLRLEEVKTKLQSQFGREPTMAEWAEGVGLNCRMLHAQLRSG 331
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI++ +V+ +A++Y+G G+ DLLQ G++G+++ E+F+ G +F Y
Sbjct: 332 SRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLVGSRFGNYAF 391
Query: 354 YWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I K V RH+R I++P +F++
Sbjct: 392 WWIRQAIRKAVFRHSRTIRLPEKVFIL 418
>gi|427416876|ref|ZP_18907059.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425759589|gb|EKV00442.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 328
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 85/135 (62%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ + L+ K L++E G A+ W+QAAG+SE L L G + ++
Sbjct: 37 EEIVLGKQVQCLMALQETKDKLDEELGHDANRVEWSQAAGISETELVHQLRHGERAKRKM 96
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD +GYKFSTY +WIR++I
Sbjct: 97 IEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFSTYAYWWIRQAI 156
Query: 361 SKMVARHARGIKIPV 375
++ +A+ +R I++P+
Sbjct: 157 TRAIAQQSRTIRLPI 171
>gi|260436019|ref|ZP_05789989.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
gi|260413893|gb|EEX07189.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8109]
Length = 335
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE ++ LE ++G+ S + A+A+G+S LK+ L
Sbjct: 37 RVPLLTHEQEITLGRQVQELMDLESLEAELESKAGEKPSRDVLAKASGLSSMQLKRKLQH 96
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 97 GRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 157 YWWIRQGITRAIAEKSRTIRLPI 179
>gi|148241988|ref|YP_001227145.1| RNA polymerase sigma factor RpoD [Synechococcus sp. RCC307]
gi|147850298|emb|CAK27792.1| RNA polymerase sigma factor RpoD, sigma-70 family [Synechococcus
sp. RCC307]
Length = 401
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E++ GK WA + +
Sbjct: 97 LQEIGRIRLLRPDEEIELARKIADLLHLEELADQYEEDHGKYPDNREWAVLVDMPPIKFR 156
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 157 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 216
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 217 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 247
>gi|427734591|ref|YP_007054135.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369632|gb|AFY53588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 389
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 90/144 (62%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER+ L ++ + + WA+A + + + L G
Sbjct: 92 RLLRADEEIELARKIADLLELERVGDRLVQQLERQPQESEWAEAVQLPLQKFRYRLHVGR 151
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 152 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 211
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 212 WIRQAITRAIADQSRTIRLPVHLY 235
>gi|33866315|ref|NP_897874.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8102]
gi|33639290|emb|CAE08298.1| Putative principal RNA polymerase sigma factor [Synechococcus sp.
WH 8102]
Length = 471
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E ++G+ WA + +
Sbjct: 167 LQEIGRIRLLRPDEEIELARKIADLLHLEELAAQFESDNGREPDKKEWAALVEMPLIRFR 226
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 227 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 286
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 287 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 317
>gi|428214219|ref|YP_007087363.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428002600|gb|AFY83443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 387
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + WA A +S +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLLELERIREHLCDHLHREPYDAEWADAVKMSVGQFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 143 HRLHCGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 202
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 203 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 233
>gi|443320294|ref|ZP_21049405.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442790001|gb|ELR99623.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 376
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LE+ + L +E + + WA + + +
Sbjct: 72 LQEIGRIRLLRAEEEIELARKIADLLELEQKREKLWQELKRIPNDREWAASVEMELPAFR 131
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 132 RRLYLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 191
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 192 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 222
>gi|443315526|ref|ZP_21045012.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442784874|gb|ELR94728.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 372
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LER+ L + + WA+A + +
Sbjct: 68 LQEIGRIRLLRAEEEIELARKIADLLELERVYDQLAETLQRDPQDAEWAEAVDMPLPKFQ 127
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 128 RRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 187
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 188 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 218
>gi|443309377|ref|ZP_21039100.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780574|gb|ELR90744.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 386
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + +ER++ L + + WA+A + +
Sbjct: 82 LQEIGRIRLLRADEEIELARKIAELLQMERVREQLCDRLDRDPHDSEWAEAVELPINSFR 141
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 142 YRLHVGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 201
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 202 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 232
>gi|284929771|ref|YP_003422293.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
gi|284810215|gb|ADB95912.1| RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma
factor, cyanobacterial RpoD-like family [cyanobacterium
UCYN-A]
Length = 318
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ +LE+ + KE+GK + WAQAA +S R L +A
Sbjct: 20 RVPLLTHEEEILYAKRVQRFVDLEKYRELFTKETGKEPTETQWAQAARISRRELHSAIAS 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|427736788|ref|YP_007056332.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427371829|gb|AFY55785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 327
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 82/129 (63%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ G+ SL W Q G++E LK+ + G ++++I++
Sbjct: 43 KQVQKMMKLVEAKEALAKKLGREVSLEEWTQEVGLAETELKKTVLEGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGALGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPV 375
R I++P+
Sbjct: 163 QGRTIRLPI 171
>gi|357113236|ref|XP_003558410.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 564
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 88/142 (61%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E ++ VQ + LE + LE + G+ ++ WA+A G+S + L+ + G CRE
Sbjct: 265 AKEEKQLFSEVQNLMKLEEAQRRLEAQCGREPAIEEWAKAVGMSCKDLQSSIHIGRRCRE 324
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ +S LV+ +AR Y+G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+
Sbjct: 325 KMARSNFRLVIHVARKYQGYGLDIEDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 384
Query: 359 SISKMVARHARGIKIPVPLFLI 380
+I K + +H+R I++P ++ +
Sbjct: 385 AIKKSIFKHSRLIRLPESVYAL 406
>gi|390438835|ref|ZP_10227270.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
gi|389837758|emb|CCI31394.1| RNA polymerase sigma factor rpoD3 [Microcystis sp. T1-4]
Length = 318
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G+ S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLRSQLGREPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|254409611|ref|ZP_05023392.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196183608|gb|EDX78591.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 374
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 83/134 (61%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++ VQ + ++ + L +E G+ + AQA ++ER + L G + ++I
Sbjct: 82 EIELATQVQFLVEMDEMTERLHQELGRKPTNAELAQALDLTERQFENRLYRGQISKRKMI 141
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I+
Sbjct: 142 RSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPAKGYKFSTYAYWWIRQAIT 201
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 202 RTIANDARTIRLPI 215
>gi|158334991|ref|YP_001516163.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|359457419|ref|ZP_09245982.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
gi|158305232|gb|ABW26849.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 371
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 85/144 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI L + L WA + + L G
Sbjct: 74 RLLRADEEIELARKIADLLELERIYDDLFDRLEREPQLQEWALEVDMPLNRFRHRLHAGR 133
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 134 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 193
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 194 WIRQAITRAIADQSRTIRLPVHLY 217
>gi|317969651|ref|ZP_07971041.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0205]
Length = 470
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G WA + +
Sbjct: 166 LQEIGRIRLLRPDEEIELARKIADLLQLEELANQFEADNGHYPDTKEWATLVEMPLVKFR 225
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 226 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 285
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 286 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 316
>gi|434405382|ref|YP_007148267.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428259637|gb|AFZ25587.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 390
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 87/144 (60%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER++ L + + + WA + + L G
Sbjct: 93 RLLRADEEIELARKIADLLELERVRERLSERLERDPKDSEWAAEVQLPLPAFRYRLHVGR 152
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 153 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 212
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 213 WIRQAITRAIADQSRTIRLPVHLY 236
>gi|123965795|ref|YP_001010876.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9515]
gi|123200161|gb|ABM71769.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9515]
Length = 397
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 93 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQFESEKGHFPSVREWAELIDMPLSKFR 152
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 153 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 212
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 213 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 243
>gi|318041167|ref|ZP_07973123.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CB0101]
Length = 464
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E + G WA + +
Sbjct: 160 LQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFETDHGHYPDTKEWAALVDMPLIKFR 219
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 220 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 279
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 280 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 310
>gi|33861053|ref|NP_892614.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639785|emb|CAE18955.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 396
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 92 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDMPLSKFR 151
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 152 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 211
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 212 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 242
>gi|78778882|ref|YP_396994.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9312]
gi|78712381|gb|ABB49558.1| Sigma-70 factor [Prochlorococcus marinus str. MIT 9312]
Length = 393
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 89 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 149 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 208
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 209 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 239
>gi|78185245|ref|YP_377680.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9902]
gi|78169539|gb|ABB26636.1| Sigma-70 factor [Synechococcus sp. CC9902]
Length = 451
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 147 LQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFR 206
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 207 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 266
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 267 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 297
>gi|254525463|ref|ZP_05137515.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
gi|221536887|gb|EEE39340.1| sigma-70 factor [Prochlorococcus marinus str. MIT 9202]
Length = 393
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 89 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 149 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 208
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 209 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 239
>gi|116072877|ref|ZP_01470142.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
gi|116064403|gb|EAU70164.1| RNA polymerase sigma factor [Synechococcus sp. BL107]
Length = 451
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 147 LQEIGRIRLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDKKEWAALVEMPLIRFR 206
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 207 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 266
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 267 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 297
>gi|168036108|ref|XP_001770550.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
gi|14669828|dbj|BAB62006.1| PpSIG1 [Physcomitrella patens]
gi|14669830|dbj|BAB62007.1| PpSIG1 [Physcomitrella patens]
gi|162678258|gb|EDQ64719.1| plastid sigma factor SIG1 [Physcomitrella patens subsp. patens]
Length = 677
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 84/140 (60%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L + E +SK +++ NL + L E G S WA +S L + L +
Sbjct: 369 LLTKQEEVFLSKKLRIGLNLLEERKKLAAELGYVPSNEEWAPHMNLSVGDLVRKLGEAEW 428
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R++++ + LV+ +A+ Y G+ +DL+Q G++G+L+G E+FDHTRGYK STYV +W
Sbjct: 429 ARDKMVMANLRLVVSVAKQYHSFGLEMADLIQEGSIGLLRGVEKFDHTRGYKLSTYVHWW 488
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+ +++ +A H+R +++PV
Sbjct: 489 IRQGVTRAIADHSRTVRLPV 508
>gi|157412913|ref|YP_001483779.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9215]
gi|157387488|gb|ABV50193.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9215]
Length = 393
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 89 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLSKFR 148
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 149 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 208
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 209 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 239
>gi|113474616|ref|YP_720677.1| RNA polymerase sigma factor [Trichodesmium erythraeum IMS101]
gi|110165664|gb|ABG50204.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 336
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 99/161 (61%), Gaps = 5/161 (3%)
Query: 220 PTIFSA----ERALNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNC 274
PT +S+ L+ GR + R E + K VQ + +K LE++ + A+L
Sbjct: 20 PTTYSSMDTVRTYLHEIGRVPLLTREEEIVYGKQVQQMMQFLELKEKLEEKLNRTATLLE 79
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ VSE+VLKQ + G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+
Sbjct: 80 WAEHLLVSEKVLKQAIKQGQRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLE 139
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+G E+FD TRGYKFSTY +WIR++I++ +A+ AR I++P+
Sbjct: 140 RGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPI 180
>gi|425441618|ref|ZP_18821888.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|425463479|ref|ZP_18842815.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
gi|389717608|emb|CCH98320.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9717]
gi|389832304|emb|CCI24201.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9809]
Length = 318
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G+ S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLRAKLGREPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|87303408|ref|ZP_01086196.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87282056|gb|EAQ74018.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 330
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 89/144 (61%), Gaps = 3/144 (2%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE + LE + G+ S WA AAG+S +LK+ L+
Sbjct: 31 RVPLLTHEQEITLGRQVQELMRLEETEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLS 90
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 91 SGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTY 150
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 151 AYWWIRQGITRAIAEKSRTIRLPI 174
>gi|126695861|ref|YP_001090747.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9301]
gi|126542904|gb|ABO17146.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9301]
Length = 394
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 90 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLPKFR 149
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 150 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 209
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 210 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 240
>gi|87301677|ref|ZP_01084517.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
gi|87283894|gb|EAQ75848.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 5701]
Length = 349
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 89/144 (61%), Gaps = 3/144 (2%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE + LE + G+ S WA AAG+S +LK+ L+
Sbjct: 47 RVPLLTHEQEITLGRQVQELMRLEEAEQELEMRAGGQKPSAAEWASAAGLSPALLKRKLS 106
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 107 SGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTY 166
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 167 AYWWIRQGITRAIAEKSRTIRLPI 190
>gi|434387533|ref|YP_007098144.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428018523|gb|AFY94617.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 318
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L +K TL +E G+ SL WA AA + E L++ ++
Sbjct: 20 RVPLLTHEQEILYGKQVQQLVSLVAVKNTLMEEFGREPSLTEWATAANIDELQLQKTISA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y I DL+Q G +G+ +G E+FD ++GY+FSTY
Sbjct: 80 GENAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFDPSKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I++P+
Sbjct: 140 YWWIRQAITRAIAEKARAIRLPI 162
>gi|427723688|ref|YP_007070965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427355408|gb|AFY38131.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 318
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ S+ VQ + LE++K L + +L WA+AA ++++ LK+ ++
Sbjct: 20 RVPLLTHEEEVVYSRRVQQMVALEKLKAELTEHQEDEPTLKEWAKAAKITQKELKKRMSI 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +++++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GAQAKQKMVEANLRLVVSVAKKYIKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|422303427|ref|ZP_16390778.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
gi|389791615|emb|CCI12597.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9806]
Length = 318
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G+ S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGRDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|123968088|ref|YP_001008946.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str.
AS9601]
gi|123198198|gb|ABM69839.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. AS9601]
Length = 394
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + T E E G S+ WA+ + +
Sbjct: 90 LQEIGRIRLLRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELIDMPLAKFR 149
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 150 RRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 209
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 210 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 240
>gi|434391486|ref|YP_007126433.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428263327|gb|AFZ29273.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 384
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 83/134 (61%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + E I+ L+ E + + A G+SER L+ L G + ++I
Sbjct: 92 EVELARRVKFIVEFEEIQQRLQAEIKRQPNKAEVATLLGMSERQLEHRLYQGRVAKRKMI 151
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I+
Sbjct: 152 RSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRAAEKFDPDKGYKFSTYAYWWIRQAIT 211
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 212 RAIANDARTIRLPI 225
>gi|225450015|ref|XP_002272444.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Vitis vinifera]
Length = 426
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 81/135 (60%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299
R EAE ++ A LE + + + + N WA+A G+ L + L G RE
Sbjct: 133 REEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRER 192
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ +S R LV+ +A Y+G G+ DL+Q G++G+L+GAERFD RGYK STYV +WIR++
Sbjct: 193 INQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQA 252
Query: 360 ISKMVARHARGIKIP 374
I + +A +R I++P
Sbjct: 253 IVRAIANKSRIIRLP 267
>gi|260435157|ref|ZP_05789127.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
gi|260413031|gb|EEX06327.1| RNA polymerase sigma factor RpoD [Synechococcus sp. WH 8109]
Length = 458
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 86/144 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL E E+++ + + LE + E ++G+ WA + ++ L G
Sbjct: 161 RLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFRRRLMLGR 220
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 221 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 280
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 281 WIRQAITRAIADQSRTIRLPVHLY 304
>gi|255556952|ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
Length = 548
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 88/141 (62%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ E+E+ VQ + +LE +K + + G+ +L WA A G+S V++ L G
Sbjct: 246 KQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSG 305
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + +V+ +A+ Y+G G+ DLLQ G++G+++ E+F G +F+TY
Sbjct: 306 NRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAY 365
Query: 354 YWIRKSISKMVARHARGIKIP 374
+WIR+++ K + +H+R I++P
Sbjct: 366 WWIRQTVRKAIFQHSRTIRLP 386
>gi|78212231|ref|YP_381010.1| RNA polymerase sigma factor RpoD [Synechococcus sp. CC9605]
gi|78196690|gb|ABB34455.1| Sigma-70 factor [Synechococcus sp. CC9605]
Length = 435
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 86/144 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL E E+++ + + LE + E ++G+ WA + ++ L G
Sbjct: 138 RLLRPDEEIELARKIADLLYLEELAAQFESDNGREPDNKEWAALVEMPLIRFRRRLMLGR 197
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 198 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 257
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 258 WIRQAITRAIADQSRTIRLPVHLY 281
>gi|257058077|ref|YP_003135965.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8802]
gi|256588243|gb|ACU99129.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 375
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A+ E E++ VQ + E+ + L +E + WAQA G S+R + L G +
Sbjct: 79 AQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGRTAK 138
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 139 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 198
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 199 QAITRTIANDARTIRLPI 216
>gi|218245053|ref|YP_002370424.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
8801]
gi|218165531|gb|ACK64268.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 375
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A+ E E++ VQ + E+ + L +E + WAQA G S+R + L G +
Sbjct: 79 AQEEIELAYSVQFLVEAEQKRQQLLEELQHPPTKAQWAQAMGFDSQRQFENRLYRGRTAK 138
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 139 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 198
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 199 QAITRTIANDARTIRLPI 216
>gi|33864638|ref|NP_896197.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 8102]
gi|33632161|emb|CAE06617.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 8102]
Length = 332
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + ++E ++T LE G S + A+A+G++ LK+ L
Sbjct: 34 RVPLLTHEQEITLGRQVQDLMDIEAMQTELESRDGDKPSRDKLAKASGLTPLQLKRKLQH 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 94 GRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 154 YWWIRQGITRAIAEKSRTIRLPI 176
>gi|428309492|ref|YP_007120469.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428251104|gb|AFZ17063.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 377
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 84/134 (62%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E +++K VQ + +++++ L+ G+ + AQ ++ER L+ L G + ++I
Sbjct: 85 EVDLAKNVQFLVEIDQLQERLQANLGRKPAKAELAQQLNMTERQLENRLYRGRVAKRKMI 144
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 145 RSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPEKGYKFSTYAYWWIRQAIT 204
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 205 RTIANDARTIRLPI 218
>gi|297736323|emb|CBI24961.3| unnamed protein product [Vitis vinifera]
Length = 319
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 81/135 (60%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299
R EAE ++ A LE + + + + N WA+A G+ L + L G RE
Sbjct: 26 REEAEFCLCLKEEAGLEAARRRIAETREHEPTSNQWAEAVGIKRSSLDKMLCNGRESRER 85
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ +S R LV+ +A Y+G G+ DL+Q G++G+L+GAERFD RGYK STYV +WIR++
Sbjct: 86 INQSYRRLVVSIAARYQGKGLSLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIRQA 145
Query: 360 ISKMVARHARGIKIP 374
I + +A +R I++P
Sbjct: 146 IVRAIANKSRIIRLP 160
>gi|425471805|ref|ZP_18850656.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
gi|389882237|emb|CCI37274.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9701]
Length = 318
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L+ + G S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLKAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|413932354|gb|AFW66905.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 542
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 87/142 (61%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E +M +Q + LE + L+ + G+ ++ WAQA G+S R L+ + G CRE
Sbjct: 245 AKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCRE 304
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ +S LV+ +AR Y G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+
Sbjct: 305 KMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 364
Query: 359 SISKMVARHARGIKIPVPLFLI 380
SI K + +++R I++P ++ +
Sbjct: 365 SIKKSIFKNSRLIRLPESVYAL 386
>gi|194696078|gb|ACF82123.1| unknown [Zea mays]
gi|323388703|gb|ADX60156.1| SIGMA70-like transcription factor [Zea mays]
gi|413932355|gb|AFW66906.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 87/142 (61%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E +M +Q + LE + L+ + G+ ++ WAQA G+S R L+ + G CRE
Sbjct: 244 AKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCRE 303
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ +S LV+ +AR Y G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+
Sbjct: 304 KMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 363
Query: 359 SISKMVARHARGIKIPVPLFLI 380
SI K + +++R I++P ++ +
Sbjct: 364 SIKKSIFKNSRLIRLPESVYAL 385
>gi|162458769|ref|NP_001105507.1| sigma-like factor6 [Zea mays]
gi|4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Length = 541
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 87/142 (61%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E +M +Q + LE + L+ + G+ ++ WAQA G+S R L+ + G CRE
Sbjct: 244 AKEEKQMFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCRE 303
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ +S LV+ +AR Y G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+
Sbjct: 304 KMARSNFRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQ 363
Query: 359 SISKMVARHARGIKIPVPLFLI 380
SI K + +++R I++P ++ +
Sbjct: 364 SIKKSIFKNSRLIRLPESVYAL 385
>gi|374853841|dbj|BAL56738.1| RNA polymerase primary sigma factor [uncultured prokaryote]
Length = 554
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/83 (51%), Positives = 63/83 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ LI++ LV+ +A+ Y G GIPF DL+Q GN+G+L+ E+FDHT+GYKFSTY +W
Sbjct: 288 AKKALIRANLRLVVSVAKRYMGRGIPFVDLIQEGNIGLLRAVEKFDHTKGYKFSTYATWW 347
Query: 356 IRKSISKMVARHARGIKIPVPLF 378
IR++IS+ +A AR I+IPV +F
Sbjct: 348 IRQAISRAIADQARTIRIPVHMF 370
>gi|443317305|ref|ZP_21046719.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783066|gb|ELR92992.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 392
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 82/134 (61%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + +E +K +L G+ L A A +SE ++Q+L G + +I
Sbjct: 100 EIELARQVRFLGEMEELKASLTDSLGRRPLLADIAHAFDLSEAQVRQNLQLGRAAKRRMI 159
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+ I+
Sbjct: 160 RSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQGIT 219
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 220 RTIANDARTIRLPI 233
>gi|78211648|ref|YP_380427.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9605]
gi|78196107|gb|ABB33872.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9605]
Length = 335
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +LE +++ L+ ++G+ S + A+A+G+S LK+ L
Sbjct: 37 RVPLLTHEQEITLGRQVQELMDLESLESELKSKAGEKPSRDQLAKASGLSSIQLKRKLQH 96
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 97 GRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 157 YWWIRQGITRAIAEKSRTIRLPI 179
>gi|254424042|ref|ZP_05037760.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196191531|gb|EDX86495.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 319
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 83/135 (61%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ + LE I+ L + + +L WA+A +S LK+ + G ++++
Sbjct: 28 QEITLGKTVQQLMKLEAIRDDLTETMDREPTLAEWAEATNLSPEALKKTVEIGQQAKDKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
++S LV+ +A+ YRG + DL+Q G++G+ +G E+FD +GY+FSTY +WIR++I
Sbjct: 88 MRSNLRLVVSIAKKYRGSKLDMMDLIQEGSLGLCRGVEKFDPLKGYRFSTYAYWWIRQAI 147
Query: 361 SKMVARHARGIKIPV 375
++ +A R I++P+
Sbjct: 148 TRAIADTGRTIRLPI 162
>gi|434386344|ref|YP_007096955.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
gi|428017334|gb|AFY93428.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Chamaesiphon minutus PCC 6605]
Length = 326
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G VQ + L+ I+ +LE+ + + WAQAA +SE L + L
Sbjct: 28 RVPLLSHEQELCYGKQVQQMMLLKGIEESLEQTLNRPPTKTEWAQAATISEAELDRVLRQ 87
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD +RGYKFSTY
Sbjct: 88 GRQAKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPSRGYKFSTYA 147
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ R I++P+
Sbjct: 148 YWWIRQAITRAIAQQGRSIRLPI 170
>gi|443668768|ref|ZP_21134260.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159026170|emb|CAO88820.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330730|gb|ELS45425.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 318
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|425434950|ref|ZP_18815414.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|425452918|ref|ZP_18832733.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440756483|ref|ZP_20935684.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675427|emb|CCH95484.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9432]
gi|389765103|emb|CCI08956.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 7941]
gi|440173705|gb|ELP53163.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 318
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|170077819|ref|YP_001734457.1| sigma-70 factor [Synechococcus sp. PCC 7002]
gi|169885488|gb|ACA99201.1| sigma-70 factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + L+ + TLE+ + A+ WA+AA ++ + L++ L
Sbjct: 29 RVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESLDREATREEWAEAAQLTPKQLQRDLQI 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ R I++P+
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPI 171
>gi|425458944|ref|ZP_18838430.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
gi|389823431|emb|CCI28324.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9808]
Length = 318
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|425455366|ref|ZP_18835086.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
gi|389803770|emb|CCI17345.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9807]
Length = 318
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|425445105|ref|ZP_18825143.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
gi|389734975|emb|CCI01445.1| RNA polymerase sigma factor rpoD3 [Microcystis aeruginosa PCC 9443]
Length = 318
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L + G S W++AA +SE L++ L
Sbjct: 20 RVPLLSHEEEILYAKQVQRLIFLEKIKESLRAKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|428307214|ref|YP_007144039.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248749|gb|AFZ14529.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 318
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L +K++L E G + + WAQA + E+ L+Q +A
Sbjct: 20 RVPLLTHEQEILYGKQVQRLVALRAVKSSLSAELGDEPNFSQWAQACELEEQELQQAIAT 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
+ +++++ LV+ +A+ Y I DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 AELAKRKMVEANLRLVVSVAKKYIKRNIDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I++P+
Sbjct: 140 YWWIRQAITRAIAEKARAIRLPI 162
>gi|427712362|ref|YP_007060986.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376491|gb|AFY60443.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 382
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 93/162 (57%), Gaps = 18/162 (11%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-----------WA 276
L GR RL A E E+++ + + LERI+ + ++ L+C WA
Sbjct: 73 LQEIGRIRLLRADEEIELARKIADLLELERIRDRISEQ------LDCDPDDLERHPEPWA 126
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
++ + L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++
Sbjct: 127 SEVKMTLPAFRHRLFVGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA 186
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
AE+FDH +GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 187 AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 228
>gi|307151291|ref|YP_003886675.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306981519|gb|ADN13400.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 318
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 84/131 (64%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
++K VQ L+ IK TL K + + WA+AA +SE L++ +A G +E+++++
Sbjct: 32 LAKRVQRSMALQEIKDTLTKNLSREPLEHEWAEAAKISEEELRRTMAAGKAAKEKMVEAN 91
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I++ +
Sbjct: 92 LRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAI 151
Query: 365 ARHARGIKIPV 375
A +R I++P+
Sbjct: 152 AEKSRTIRLPI 162
>gi|166367266|ref|YP_001659539.1| RNA polymerase sigma factor SigD [Microcystis aeruginosa NIES-843]
gi|166089639|dbj|BAG04347.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 318
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 92/143 (64%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+IK +L+ + G S W++AA +SE L++ L
Sbjct: 20 RVPLLTHEEEILYAKQVQRLIFLEKIKESLKVKLGSDPSDRQWSEAAEISEEQLRRELGA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GDFAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|218439771|ref|YP_002378100.1| RNA polymerase sigma factor [Cyanothece sp. PCC 7424]
gi|218172499|gb|ACK71232.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 328
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 105/177 (59%), Gaps = 15/177 (8%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEK 264
+P+ + ++PT FSA+ L+ GR + + +E E+ G QV +++ T LEK
Sbjct: 1 MPTAKVNPKTQKPT-FSADMVRTYLHEIGR-VPLLTHEQEIVYGKQV----QKMMTLLEK 54
Query: 265 ------ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGL 318
E GK +L WA +SE L + + G + ++I++ LV+ +A+ Y+
Sbjct: 55 KDQLAIELGKEPNLTEWANQVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKR 114
Query: 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+ F DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P+
Sbjct: 115 NMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPI 171
>gi|411117480|ref|ZP_11389967.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410713583|gb|EKQ71084.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 407
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 83/134 (61%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++ ++ + +E +++ L +E G+ S A A G++ER L+ L + ++I
Sbjct: 115 EVELANQIRYLNEIEELRSQLTQELGRCPSKAELADAVGLTERQLEHQLHRSRVAKRKMI 174
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+ I+
Sbjct: 175 RSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQGIT 234
Query: 362 KMVARHARGIKIPV 375
+ +A +R I++PV
Sbjct: 235 RTIANDSRTIRLPV 248
>gi|158335492|ref|YP_001516664.1| RNA polymerase sigma factor [Acaryochloris marina MBIC11017]
gi|158305733|gb|ABW27350.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 327
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L ++ T+ E G+ SL WA+ A +S L+ L
Sbjct: 29 RVPLLTHEEEIVFGKQVQAMMALLDLQKTVMDELGREPSLEEWAEKANLSPSQLELSLHQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 89 GQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPI 171
>gi|254430902|ref|ZP_05044605.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
gi|197625355|gb|EDY37914.1| DNA-directed RNA polymerase sigma subunit [Cyanobium sp. PCC 7001]
Length = 503
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E + G WA + +
Sbjct: 199 LQEIGRIRLLRPDEEIELARKIADLLQLEELAAQFEADHGHYPDNKEWAALVDMPLIKFR 258
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 259 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 318
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 319 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 349
>gi|126659670|ref|ZP_01730799.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
gi|126619015|gb|EAZ89755.1| RNA polymerase sigma factor [Cyanothece sp. CCY0110]
Length = 369
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A+ E E++ VQ + E + L +E + + W QA G +++ + L G +
Sbjct: 73 AQEEVELANHVQFLVQAEETRQQLREELQRPPTKAEWGQAMGFETQKQFEHRLHRGRTAK 132
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 133 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 192
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 193 QAITRTIANDARTIRLPI 210
>gi|113954287|ref|YP_730230.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881638|gb|ABI46596.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 318
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 86/137 (62%), Gaps = 1/137 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + +LE ++ L ++ G+ + + WA+AAG+S LK+ L G +E
Sbjct: 26 QQEITLGRQVQELMDLEALEAELKDQRGGEEVARDEWAKAAGMSAAQLKRKLQAGRRAKE 85
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 86 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 145
Query: 359 SISKMVARHARGIKIPV 375
I++ +A +R I++P+
Sbjct: 146 GITRAIAEKSRTIRLPI 162
>gi|218247332|ref|YP_002372703.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8801]
gi|218167810|gb|ACK66547.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
Length = 328
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 104/173 (60%), Gaps = 7/173 (4%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQV--VANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ G QV + +L +K L
Sbjct: 1 MPTANVNSKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIVYGKQVQRMMSLFEMKDQL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ G S WA+A + E LK+ + G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 TQAQGTEPSDKEWAKAVNLKEPELKKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P+
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPI 171
>gi|33863540|ref|NP_895100.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9313]
gi|33640989|emb|CAE21447.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9313]
Length = 461
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + + G + WA + +
Sbjct: 157 LQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWASLVEMPNIKFR 216
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 217 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 276
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 277 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 307
>gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33238770|gb|AAQ00835.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 328
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + NE E++ G VQ + +LE+++ LE +GK S A AG+S R L + L
Sbjct: 30 RVPLLTNEQEITLGRQVQELISLEKLERELESTNGKKPSKEDLAIDAGISVRELSKRLKR 89
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD RGYKFSTY
Sbjct: 90 GVRAKERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYA 149
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 150 YWWIRQGITRAIAEKSRIIRLPI 172
>gi|411120413|ref|ZP_11392785.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
gi|410709082|gb|EKQ66597.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoriales cyanobacterium JSC-12]
Length = 318
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 79/135 (58%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E K VQ + L K L G+ S WAQA+ +S LKQ +A G Y + ++
Sbjct: 28 QEVVFGKQVQRLTLLNDTKDGLANRLGRTPSFEEWAQASQLSSAELKQAIAEGEYAKRKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
+++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I
Sbjct: 88 VEANLRLVVSVAKKYTKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAI 147
Query: 361 SKMVARHARGIKIPV 375
++ +A R I++P+
Sbjct: 148 TRAIAEKGRTIRLPI 162
>gi|124022438|ref|YP_001016745.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus str. MIT
9303]
gi|123962724|gb|ABM77480.1| Putative principal RNA polymerase sigma factor [Prochlorococcus
marinus str. MIT 9303]
Length = 444
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + + G + WA + +
Sbjct: 140 LQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPNNKEWAALVEMPNIKFR 199
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 200 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 259
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 260 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 290
>gi|428203741|ref|YP_007082330.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981173|gb|AFY78773.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 328
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 104/177 (58%), Gaps = 15/177 (8%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEK 264
+P+ + +QP +FSA+ L+ GR + + +E E+ G QV +R+ T LEK
Sbjct: 1 MPTAKVNSNKQQP-VFSADMVRTYLHEIGR-VPLLTHEQEIVYGKQV----QRMMTLLEK 54
Query: 265 ES------GKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGL 318
+ G SL WA + E L + +A G + ++I++ LV+ +A+ Y+
Sbjct: 55 KEELASKLGHEPSLTEWANYVQLGEDELNRAIAQGNRAKRKMIEANLRLVVAIAKKYQKR 114
Query: 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+ F DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P+
Sbjct: 115 NMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPI 171
>gi|416404726|ref|ZP_11687748.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357261487|gb|EHJ10751.1| Cyanobacteria-specific RpoD-like sigma factor, type-3 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 328
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 103/173 (59%), Gaps = 7/173 (4%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ K VQ + N K L
Sbjct: 1 MPTANVNTKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQKMMNFLEKKEEL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ GK ++ W++ + ++ L Q L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 ADKLGKEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P+
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPI 171
>gi|357440353|ref|XP_003590454.1| RNA polymerase sigma factor [Medicago truncatula]
gi|355479502|gb|AES60705.1| RNA polymerase sigma factor [Medicago truncatula]
Length = 567
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 92/145 (63%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L + E+++ +Q + LE +KT+L+ + G+ ++ WA+ AG++ R +K L G
Sbjct: 265 KQLLTSEQESQLVVQIQELLRLEDLKTSLQSQFGREPTMAEWAEGAGLNCRKMKAQLRCG 324
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI++ LV ++A++Y+G G+ DLLQ G+ G+++ ++F G +F++Y
Sbjct: 325 NRSREKLIQANLRLVHYIAKSYQGRGLSIEDLLQEGSTGLIKSIKKFKTQAGCRFASYAY 384
Query: 354 YWIRKSISKMVARHARGIKIPVPLF 378
+WI+++I K + H+R I++P ++
Sbjct: 385 WWIKQAIRKAIYNHSRTIRLPEKVY 409
>gi|443311220|ref|ZP_21040852.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778750|gb|ELR89011.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 383
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 86/137 (62%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A E E++K VQ + ++ ++ +L + + A+ A A G++ER L+Q L G +
Sbjct: 88 ADEEVELAKRVQFLVEVDNLQESLSSKLNRRATQAETAAAFGLTERQLEQKLYQGRVAKR 147
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++I+S LV+ +A+ Y G+ F DL+Q G +G+ + E+FD +GYKFSTY +WIR+
Sbjct: 148 KMIRSNLRLVVSIAKRYLNRGVQFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQ 207
Query: 359 SISKMVARHARGIKIPV 375
+I++ +A AR I++P+
Sbjct: 208 AITRAIANDARTIRLPI 224
>gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp. PCC 7002]
Length = 328
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + L+ + TLE+ + + WA+AA ++ + L++ L
Sbjct: 29 RVPLLTHEEEIVYGKQVQRLMALQEKRQTLEESLDRERTREEWAEAAQLTPKQLQRDLQI 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +ARN + + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GERAKRKMIEANLRLVVAIARNIKKRNLEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ R I++P+
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPI 171
>gi|428780048|ref|YP_007171834.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
gi|428694327|gb|AFZ50477.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Dactylococcopsis salina PCC 8305]
Length = 375
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 84/134 (62%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ +A++E + L ESG + + A +S + L++ L G + ++I
Sbjct: 84 EIELAQKVKFLADMENKRQELAIESGSSPTKEELAATVSLSVKELERKLHQGRLAKRQMI 143
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 144 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWWIRQAIT 203
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 204 RTIANDARTIRLPI 217
>gi|168000881|ref|XP_001753144.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695843|gb|EDQ82185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 581
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 95/155 (61%), Gaps = 9/155 (5%)
Query: 235 RLTIARNEAEMSKGVQVVA---------NLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
+L A E +S+ +QV LE+++ L+++ G+ + + W+ A G+++ +
Sbjct: 271 KLLTAFEEVALSRKIQVTTLFRFRQYTLKLEKVRAELQRDMGREPTRSEWSLAVGMNQTL 330
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+ + G +++L+ S LV+ + +NY+G G+ DL+Q G++G+++GAE+FD G
Sbjct: 331 FELRIKEGQCAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQRGSLGLIRGAEKFDPEMG 390
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+KFSTY +WIR+++++ + +R I++PV ++ +
Sbjct: 391 FKFSTYATWWIRQAVTRSITDQSRIIRLPVHIYEV 425
>gi|443327806|ref|ZP_21056414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792535|gb|ELS02014.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 375
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFGWYCREEL 300
E ++ V+++ E I+ L ++ + S WAQA G+S R L++ L G + ++
Sbjct: 82 EVVLANEVKLMVEAEAIRQDLIEQLDRNPSREEWAQAIGLSSTRELEKFLYRGKVAKRKM 141
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I
Sbjct: 142 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWWIRQAI 201
Query: 361 SKMVARHARGIKIPV 375
++ +A AR I++P+
Sbjct: 202 TRTIANDARTIRLPI 216
>gi|414078407|ref|YP_006997725.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
gi|413971823|gb|AFW95912.1| RpoD family RNA polymerase sigma factor SigA [Anabaena sp. 90]
Length = 391
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 86/144 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LER + L + + + WA + + L G
Sbjct: 94 RLLRADEEIELARKIAELLELERARERLCERLERDPRDSEWAAEVSLPLPTFRYRLHVGR 153
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 154 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 213
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 214 WIRQAITRAIADQSRTIRLPVHLY 237
>gi|115475493|ref|NP_001061343.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group]
gi|40253642|dbj|BAD05586.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|40253689|dbj|BAD05631.1| Sig6, plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
gi|113623312|dbj|BAF23257.1| Os08g0242800 [Oryza sativa Japonica Group]
gi|215712228|dbj|BAG94355.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 572
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 86/142 (60%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A+ E + +Q++ +E LE + G+ +L WA+A G+S + L+ + G CRE
Sbjct: 276 AKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCRE 335
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ +S LV+ +AR Y G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+
Sbjct: 336 KMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQ 395
Query: 359 SISKMVARHARGIKIPVPLFLI 380
SI K + +++R I++P ++ +
Sbjct: 396 SIKKSIFKNSRLIRLPESVYAL 417
>gi|172038507|ref|YP_001805008.1| RNA polymerase sigma factor SigD [Cyanothece sp. ATCC 51142]
gi|354554149|ref|ZP_08973454.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171699961|gb|ACB52942.1| group 2 sigma-70 RNA polymerase sigma factor D [Cyanothece sp. ATCC
51142]
gi|353553828|gb|EHC23219.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 318
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 93/143 (65%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+G+ + + WA+AA +S+R + +
Sbjct: 20 RVPLLTHEEEILYAKRVQRLVNLEKLREEIIEETGQEPTESQWAKAAKLSKREFRSIVES 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|119489578|ref|ZP_01622338.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119454490|gb|EAW35638.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 319
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ A L+ K L K G+ S WA+ AGVS + LKQ L
Sbjct: 21 RVPLLTHEQEILYGKQVQQSAILQEGKEKLAKRLGREPSYAEWAENAGVSLKELKQALED 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPI 163
>gi|209523577|ref|ZP_03272131.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|376004385|ref|ZP_09782099.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
gi|209495982|gb|EDZ96283.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|375327277|emb|CCE17852.1| RNA polymerase sigma factor rpoD [Arthrospira sp. PCC 8005]
Length = 387
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + + + WA A + +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 143 RRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 202
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 203 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 233
>gi|423065852|ref|ZP_17054642.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406712610|gb|EKD07794.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 372
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 89/144 (61%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L + + + WA A + ++ L G
Sbjct: 75 RLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFRRRLFLGR 134
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 135 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 194
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 195 WIRQAITRAIADQSRTIRLPVHLY 218
>gi|409993807|ref|ZP_11276936.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
gi|291570496|dbj|BAI92768.1| principal RNA polymerase sigma factor SigA [Arthrospira platensis
NIES-39]
gi|409935351|gb|EKN76886.1| RNA polymerase sigma factor RpoD [Arthrospira platensis str.
Paraca]
Length = 387
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L + + + WA A + +
Sbjct: 83 LQEIGRIRLLRADEEIELARKIADLLELERIREKLIEHYHREPNEKEWANAVDMRLPEFR 142
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 143 RRLFLGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 202
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 203 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 233
>gi|172035517|ref|YP_001802018.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|354555605|ref|ZP_08974906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171696971|gb|ACB49952.1| group 2 sigma-70 RNA polymerase sigma factor E [Cyanothece sp. ATCC
51142]
gi|353552664|gb|EHC22059.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 374
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ VQ + E + L++ + S WA+A G +++ + L G +
Sbjct: 78 AEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGRTAK 137
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 138 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 197
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 198 QAITRTIANDARTIRLPI 215
>gi|428770800|ref|YP_007162590.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428685079|gb|AFZ54546.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 332
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 84/129 (65%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L +K LEK + +L WAQ A + +K+ + G ++++I++
Sbjct: 47 KQVQQMMSLYEVKENLEKNLEREVTLEEWAQKADKTPNEVKKIIHQGKRAKQKMIEANLR 106
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+G+KFSTY +WIR++I++ +A+
Sbjct: 107 LVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYAYWWIRQAITRAIAQ 166
Query: 367 HARGIKIPV 375
AR I++P+
Sbjct: 167 QARTIRLPI 175
>gi|425464726|ref|ZP_18844036.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
gi|389833185|emb|CCI22530.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9809]
Length = 377
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWANALQLDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 201 QAITRTIANDARTIRLPI 218
>gi|257061333|ref|YP_003139221.1| RNA polymerase sigma factor [Cyanothece sp. PCC 8802]
gi|256591499|gb|ACV02386.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 328
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 104/173 (60%), Gaps = 7/173 (4%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQV--VANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ G QV + +L +K L
Sbjct: 1 MPTANVNSKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIVYGKQVQRMMSLFEMKDQL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ G S WA+A + E L++ + G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 TQAQGTEPSDKEWAKAVNLKEPELQKTIEQGNRAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P+
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPI 171
>gi|307153454|ref|YP_003888838.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306983682|gb|ADN15563.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 372
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREEL 300
E E++ V+ + E + L+ + + S WAQA G+ +ER L+ L G + ++
Sbjct: 79 EIELAYTVKFLMESEEKRQELQVQLERPPSKLEWAQAMGLKNERQLENRLYRGRAAKRKM 138
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I
Sbjct: 139 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAI 198
Query: 361 SKMVARHARGIKIPV 375
++ +A AR I++P+
Sbjct: 199 TRTIANDARTIRLPI 213
>gi|428217892|ref|YP_007102357.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudanabaena sp.
PCC 7367]
gi|427989674|gb|AFY69929.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena sp.
PCC 7367]
Length = 412
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESG----KAASLNCWAQAAGVSERVLKQHL 290
RL A E E+++ + + LE+ + L E G + S + WA + ++ L
Sbjct: 111 RLLRADEEIELARKIADLLELEQQREELANEMGLDDPEEVSDSDWAVKVDMPLPRFRRRL 170
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFST
Sbjct: 171 YEGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFST 230
Query: 351 YVQYWIRKSISKMVARHARGIKIPVPLF 378
Y +WIR++I++ +A +R I++PV L+
Sbjct: 231 YATWWIRQAITRAIADQSRTIRLPVHLY 258
>gi|282900289|ref|ZP_06308240.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281194794|gb|EFA69740.1| sigE (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 327
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ K VQ + L +K L KE G SL+ WA SE LK ++
Sbjct: 29 RVPLLNREQEIIYGKQVQQMMLLLEVKEALTKELGYEPSLSEWAIYVNQSENDLKHKIST 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD T GYKFSTY
Sbjct: 89 GKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTMGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ R I++P+
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPI 171
>gi|57864855|gb|AAW57030.1| putative group 2 RNA polymerase sigma factor [Cyanothece sp. ATCC
51142]
Length = 368
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 83/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ VQ + E + L++ + S WA+A G +++ + L G +
Sbjct: 72 AEEEVELAHHVQFLVQAEETRQQLQEALQHSPSKAEWAKAMGFETQKQFEHRLHRGRTAK 131
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 132 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 191
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 192 QAITRTIANDARTIRLPI 209
>gi|297741628|emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 89/145 (61%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
R+L A+ E+E+ +Q + LE +K L+ + ++ WA+A G+S +VL+ L G
Sbjct: 259 RKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSG 318
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
R++LI + +V+ +A+ Y+G G+ DLLQ G++G++ E+F G +F++Y
Sbjct: 319 NRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAY 378
Query: 354 YWIRKSISKMVARHARGIKIPVPLF 378
+WIR+++ K + +H+R I++P ++
Sbjct: 379 WWIRQAVRKAIFQHSRTIRLPENMY 403
>gi|166368031|ref|YP_001660304.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|166090404|dbj|BAG05112.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 377
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWASALQLDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 201 QAITRTIANDARTIRLPI 218
>gi|434396665|ref|YP_007130669.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428267762|gb|AFZ33703.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 327
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L K LE + GK SL WA +SE L + +
Sbjct: 29 RVPLLTHEQEIVYGKQVQKMMTLLTKKEKLEHKLGKELSLKEWANQVNLSEAELDRAIKQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E++D T+GYKFSTY
Sbjct: 89 GQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKYDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPI 171
>gi|33239946|ref|NP_874888.1| RNA polymerase sigma factor RpoD [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237472|gb|AAP99540.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 438
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + +LE + E E G + WA + +
Sbjct: 134 LQEIGRIRLLRPDEEIELARKIADLLHLEELAIQFESEHGNYPTKKEWAALVNMPMARFR 193
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 194 RRLMLARRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 253
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 254 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 284
>gi|440680152|ref|YP_007154947.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677271|gb|AFZ56037.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 377
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 86/140 (61%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ + ++ ++ LE E G+ S N A ++E+ L+ L G
Sbjct: 79 LLKADEEVELARRVRFLEEVKDLQAALELELGQQPSKNEVASKFEMTEKQLESRLYQGRV 138
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +W
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I++P+
Sbjct: 199 IRQAITRAIANDARTIRLPI 218
>gi|67924587|ref|ZP_00518002.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853561|gb|EAM48905.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 328
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 103/173 (59%), Gaps = 7/173 (4%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEM--SKGVQVVANLERIKTTL 262
+P+ + KQP ++SA+ L+ GR + + +E E+ K VQ + N K L
Sbjct: 1 MPTANVNTKTKQP-MYSADMVRTYLHEIGR-VPLLTHEQEIIYGKQVQKMMNFLEKKEEL 58
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
+ GK ++ W++ + ++ L Q L G + ++I++ LV+ +A+ Y+ + F
Sbjct: 59 ADKLGKEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEF 118
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ +R I++P+
Sbjct: 119 LDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPI 171
>gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus elongatus PCC 7942]
Length = 384
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L ++ + S WA A +
Sbjct: 80 LQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFR 139
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 140 RRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 199
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 200 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 230
>gi|359481391|ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 89/145 (61%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
R+L A+ E+E+ +Q + LE +K L+ + ++ WA+A G+S +VL+ L G
Sbjct: 270 RKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSG 329
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
R++LI + +V+ +A+ Y+G G+ DLLQ G++G++ E+F G +F++Y
Sbjct: 330 NRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAY 389
Query: 354 YWIRKSISKMVARHARGIKIPVPLF 378
+WIR+++ K + +H+R I++P ++
Sbjct: 390 WWIRQAVRKAIFQHSRTIRLPENMY 414
>gi|81299460|ref|YP_399668.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 7942]
gi|93141306|sp|P38023.2|RPOD1_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD1
gi|81168341|gb|ABB56681.1| Sigma-70 factor [Synechococcus elongatus PCC 7942]
Length = 399
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L ++ + S WA A +
Sbjct: 95 LQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFR 154
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 155 RRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 214
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 215 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 245
>gi|56750888|ref|YP_171589.1| RNA polymerase sigma factor RpoD [Synechococcus elongatus PCC 6301]
gi|56685847|dbj|BAD79069.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus
elongatus PCC 6301]
Length = 399
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E E+++ + + LERI+ L ++ + S WA A +
Sbjct: 95 LQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFR 154
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 155 RRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 214
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 215 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 245
>gi|119513754|ref|ZP_01632741.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
gi|119461595|gb|EAW42645.1| Sigma 28 (Flagella/Sporulation) [Nodularia spumigena CCY9414]
Length = 327
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
Query: 233 GRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
GR + R+E + K VQ + L K L KE SL WA + E+ + Q +A
Sbjct: 28 GRVPLLTRDEEIIFGKQVQQMMTLLDAKQALAKELDHDPSLPEWAAQVNLPEKEVTQIVA 87
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 88 QGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTY 147
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ R I++P+
Sbjct: 148 AYWWIRQAITRAIAQQGRTIRLPI 171
>gi|428214900|ref|YP_007088044.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428003281|gb|AFY84124.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 334
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 90/144 (62%), Gaps = 4/144 (2%)
Query: 235 RLTIARNEAEMSKGVQV---VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E+ G QV +A LE K TLEK+ + + WA+A G S LK +
Sbjct: 36 RVPLLTHEQEIVFGKQVQQMMAFLE-AKETLEKKLKREPTEEEWAEAVGHSVGDLKNLVK 94
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY
Sbjct: 95 IGRRSKQKMIEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMRGYKFSTY 154
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 155 AYWWIRQAITRAIAQQARTIRLPI 178
>gi|428772058|ref|YP_007163846.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686337|gb|AFZ46197.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 318
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ +K +Q + LE+ K TL K+ +L WA+AA +SE+ L+ +
Sbjct: 20 RIPLLTQEEEIIYAKHIQELVALEKKKETLAKKLEHEPTLGEWAKAAKISEKNLQIKITQ 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEKAKRRMVEANLRLVVSIAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRAIRLPL 162
>gi|428203773|ref|YP_007082362.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
gi|427981205|gb|AFY78805.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Pleurocapsa sp. PCC 7327]
Length = 375
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS-ERVLKQHLAFGWYCREEL 300
E E++ V+ + + E + L++ + + WAQA ++ ER L+ L G + ++
Sbjct: 82 EIELAHSVKFLVDAEETRRQLQEAFKRPPTKAEWAQALKMANERQLENRLYRGRCAKRKM 141
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I
Sbjct: 142 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWWIRQAI 201
Query: 361 SKMVARHARGIKIPV 375
++ +A AR I++P+
Sbjct: 202 TRTIANDARTIRLPI 216
>gi|126659335|ref|ZP_01730471.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
gi|126619417|gb|EAZ90150.1| RNA polymerase sigma factor SigD [Cyanothece sp. CCY0110]
Length = 318
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+G+ + WA+ A +S + L+ +
Sbjct: 20 RVPLLTHEEEILYAKRVQRLVNLEKLRDDIIEETGQEPTEIQWAKTAKISRKELQSIIEI 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|412993395|emb|CCO16928.1| RNA polymerase sigma factor RpoD [Bathycoccus prasinos]
Length = 733
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 17/156 (10%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN--------------CWAQAAGVSER 284
A E ++++ +Q + NLE TT ++ K A N WA+ G++E
Sbjct: 395 ANEEVQLARKIQDLMNLE---TTYKELVAKVAEGNDPIAQTHGDKVTKSMWARELGLTEF 451
Query: 285 VLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTR 344
L+ L G + +I++ LV+ +A+ Y + F DL+Q G VG+++GAE+FD R
Sbjct: 452 ELEMRLTEGKNAKNHMIQANLRLVVSIAKRYANRNMSFQDLIQEGCVGLIRGAEKFDFER 511
Query: 345 GYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
GYKFSTY +WIR+++++ ++ +R I++PV LF I
Sbjct: 512 GYKFSTYAHWWIRQAVTRSISDQSRTIRLPVHLFEI 547
>gi|434396918|ref|YP_007130922.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428268015|gb|AFZ33956.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 368
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 83/135 (61%), Gaps = 1/135 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREEL 300
E E++ V+V+ E I+ L+++ + + W +A + S R L+ L G + ++
Sbjct: 75 EVELANCVKVMVQAEEIRQQLKEQLNRQPTKEEWTKALQLESIRQLENRLYRGRVAKRKM 134
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I
Sbjct: 135 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRATEKFDPNKGYKFSTYAYWWIRQAI 194
Query: 361 SKMVARHARGIKIPV 375
++ +A AR I++P+
Sbjct: 195 TRTIANDARTIRLPI 209
>gi|218440063|ref|YP_002378392.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7424]
gi|218172791|gb|ACK71524.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 372
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 79/127 (62%), Gaps = 12/127 (9%)
Query: 250 QVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREELIKSTRPLV 308
Q+ +L+R T LE WAQA G+ +ER L+ L G + ++I+S LV
Sbjct: 98 QLQIDLQRPPTKLE-----------WAQAMGLQNERQLENRLYRGRSAKRKMIRSNLRLV 146
Query: 309 LFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368
+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I++ +A A
Sbjct: 147 VSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAITRTIANDA 206
Query: 369 RGIKIPV 375
R I++P+
Sbjct: 207 RTIRLPI 213
>gi|427417818|ref|ZP_18908001.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425760531|gb|EKV01384.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 376
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 86/144 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL A E E+++ + + LERI+ L WA A + ++ L G
Sbjct: 79 RLLRAEEEIELARKIADLLELERIRDDLSDGMDHEPDDADWAAAVDMPLPAFRRRLHLGR 138
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 139 RAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 198
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 199 WIRQAITRAIADQSRTIRLPVHLY 222
>gi|427730640|ref|YP_007076877.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427366559|gb|AFY49280.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 352
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 81/129 (62%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L K L K+ + SL WA SE +KQ +A G ++++I++
Sbjct: 68 KQVQQMMSLLDAKEALAKKLEREPSLPEWADHVHQSETEVKQTVAQGKRAKQKMIEANLR 127
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 128 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 187
Query: 367 HARGIKIPV 375
R I++P+
Sbjct: 188 QGRTIRLPI 196
>gi|428774876|ref|YP_007166663.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428689155|gb|AFZ42449.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 328
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 103/172 (59%), Gaps = 5/172 (2%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLE 263
+P+ L + +P IFSA+ L+ GR L E + K VQ + L K LE
Sbjct: 1 MPTAKLDQNNDKP-IFSADMVRTYLHEIGRVPLLTHEQEIILGKQVQKMMKLIEQKEELE 59
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+E G+ A+ W Q AG+S+ L++ + G + ++I++ LV+ +A+ Y+ + F
Sbjct: 60 EELGREATDEEWTQKAGISQEELQKAMREGNRAKRKMIEANLRLVVAIAKKYQKRNMEFL 119
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+ AR I++P+
Sbjct: 120 DLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARAIRLPI 171
>gi|425454900|ref|ZP_18834625.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
gi|389804301|emb|CCI16819.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9807]
Length = 377
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 201 QAITRTIANDARTIRLPI 218
>gi|425447335|ref|ZP_18827325.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
gi|389732113|emb|CCI03895.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9443]
Length = 377
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 201 QAITRTIANDARTIRLPI 218
>gi|425440636|ref|ZP_18820934.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
gi|389718887|emb|CCH97220.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9717]
Length = 377
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 201 QAITRTIANDARTIRLPI 218
>gi|254432638|ref|ZP_05046341.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627091|gb|EDY39650.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 335
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 88/144 (61%), Gaps = 3/144 (2%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE ++ L + G A S A+AAG+S VLK+ L
Sbjct: 31 RVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQ 90
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 91 AGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTY 150
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 151 AYWWIRQGITRAIAEKSRTIRLPI 174
>gi|425437461|ref|ZP_18817876.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440756281|ref|ZP_20935482.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
gi|169883528|gb|ACA97859.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
gi|389677539|emb|CCH93515.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9432]
gi|440173503|gb|ELP52961.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa TAIHU98]
Length = 377
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 201 QAITRTIANDARTIRLPI 218
>gi|254432550|ref|ZP_05046253.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
gi|197627003|gb|EDY39562.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Cyanobium sp. PCC 7001]
Length = 319
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 88/144 (61%), Gaps = 3/144 (2%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE ++ L + G A S A+AAG+S VLK+ L
Sbjct: 15 RVPLLTHEQEITLGRQVQELMALEEMEQELTMRAGGTAPSAAELAKAAGLSPAVLKKRLQ 74
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 75 AGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTY 134
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 135 AYWWIRQGITRAIAEKSRTIRLPI 158
>gi|390437727|ref|ZP_10226255.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
gi|389838859|emb|CCI30379.1| RNA polymerase sigma factor rpoD [Microcystis sp. T1-4]
Length = 378
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 201 QAITRTIANDARTIRLPI 218
>gi|334119649|ref|ZP_08493734.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333457811|gb|EGK86432.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 357
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 83/140 (59%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ VQ + L+ ++ L++E + + A A G+SE L+Q
Sbjct: 59 LLTATEEVELARRVQELVALDEVEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +W
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWW 178
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+ I++ +A R I++PV
Sbjct: 179 IRQGITRTIANQGRTIRLPV 198
>gi|443317112|ref|ZP_21046533.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
gi|442783319|gb|ELR93238.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 6406]
Length = 327
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 81/135 (60%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ L +KT +++ G+ S WA AA + L Q L G + ++
Sbjct: 37 QEIVLGKQVQQFMTLLDLKTQMKESLGQDPSDQEWAGAAHLDTATLTQQLHEGEQAKRQM 96
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD +GYKFSTY +WIR++I
Sbjct: 97 IEANLRLVVAIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGYKFSTYAYWWIRQAI 156
Query: 361 SKMVARHARGIKIPV 375
++ +A+ AR I++P+
Sbjct: 157 TRAIAQQARTIRLPI 171
>gi|422301798|ref|ZP_16389163.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
gi|389789168|emb|CCI14818.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9806]
Length = 377
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 201 QAITRTIANDARTIRLPI 218
>gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa]
Length = 376
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 201 QAITRTIANDARTIRLPI 218
>gi|425469001|ref|ZP_18847970.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
gi|389884193|emb|CCI35494.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9701]
Length = 377
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYSVKFLMEAEEVRQKLQENLHRPPTKTEWAIALQLDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 201 QAITRTIANDARTIRLPI 218
>gi|218247827|ref|YP_002373198.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8801]
gi|257060853|ref|YP_003138741.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 8802]
gi|218168305|gb|ACK67042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8801]
gi|256591019|gb|ACV01906.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 8802]
Length = 318
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ LE +K +L +E G+ ++ WA+AA ++++ L+ +
Sbjct: 20 RVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIAQWAKAAKMTQKELRSAIEA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|194477302|ref|YP_002049481.1| RNA polymerase sigma factor [Paulinella chromatophora]
gi|171192309|gb|ACB43271.1| RNA polymerase sigma factor [Paulinella chromatophora]
Length = 460
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E G WA +S +
Sbjct: 156 LQEIGRIRLLRPDEEIELARKISDLLYLEELAGQFEGRKGYYPDNKEWAALVEMSLIKFR 215
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G + ++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 216 RRLMLGRRAKAKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 275
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 276 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 306
>gi|427701422|ref|YP_007044644.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427344590|gb|AFY27303.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 432
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE E + G WA + +
Sbjct: 128 LQEIGRIRLLRPDEEIELARKIADLLELEEKAAEFEADKGHFPDTKEWAAIFDMPLIKFR 187
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E+++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 188 RRLMLGRRAKEKMVLSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 247
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 248 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 278
>gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942]
Length = 320
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 29 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 88
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++
Sbjct: 89 MIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQA 148
Query: 360 ISKMVARHARGIKIPV 375
I++ +A AR I++P+
Sbjct: 149 ITRAIAEKARTIRLPI 164
>gi|427724985|ref|YP_007072262.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427356705|gb|AFY39428.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 373
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 82/135 (60%), Gaps = 1/135 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFGWYCREEL 300
E +++ V+ + + E + L +E G++ S WA ++ R L L G + ++
Sbjct: 80 EIQLAHSVKFLNDAEEKRLALTEELGRSPSKEEWAAVLKIATIRELNSQLYKGRVAKRKM 139
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I
Sbjct: 140 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAI 199
Query: 361 SKMVARHARGIKIPV 375
++ +A AR I++P+
Sbjct: 200 TRTIANDARTIRLPI 214
>gi|282895449|ref|ZP_06303586.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199482|gb|EFA74345.1| sigE (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 327
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ K VQ + L K L KE G SL+ WA SE LK ++
Sbjct: 29 RVPLLNREQEIIYGKQVQQMMILVEAKEALAKELGYEPSLSEWAIYVNQSENDLKHKIST 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD T GYKFSTY
Sbjct: 89 GKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTMGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ R I++P+
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPI 171
>gi|428777601|ref|YP_007169388.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halothece sp. PCC
7418]
gi|428691880|gb|AFZ45174.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halothece sp. PCC
7418]
Length = 375
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 82/134 (61%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V++ A+ E + L ++ G + A+A + + L + L G + +I
Sbjct: 84 EVELAQQVKLAADFEHKRQELAEKLGSPPTKQQLAEALEMGVKELDRKLYQGRVAKRRMI 143
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I+
Sbjct: 144 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAIT 203
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 204 RTIANDARTIRLPI 217
>gi|17231302|ref|NP_487850.1| RNA polymerase sigma factor SigD [Nostoc sp. PCC 7120]
gi|8489797|gb|AAF75755.1|AF262216_2 group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
gi|17132944|dbj|BAB75509.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120]
Length = 332
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L+ ++ L +SG+ S+ WA+AA ++ L + +A
Sbjct: 34 RVPLLSHEEEIRYGKQVQRSTTLQEMREELATQSGREPSVEEWAKAANLNPADLLEAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I++P+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPI 176
>gi|427729632|ref|YP_007075869.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427365551|gb|AFY48272.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 388
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 84/134 (62%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++K V+ + +++ ++ LE E G+ + A ++E+ L+ L G + ++I
Sbjct: 96 EVELAKRVRFLEDVKDLQEALELELGQQPTKAQIADKFEITEKQLENRLYQGRVAKRKMI 155
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 156 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 215
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 216 RAIANDARTIRLPI 229
>gi|291566702|dbj|BAI88974.1| group 2 RNA polymerase sigma factor SigB [Arthrospira platensis
NIES-39]
Length = 334
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 82/129 (63%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + NL ++ L KE + + W+ AG+SE + + G ++++I++
Sbjct: 50 KKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRRAKQKMIEANLR 109
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 110 LVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 169
Query: 367 HARGIKIPV 375
++R I++P+
Sbjct: 170 NSRTIRLPI 178
>gi|409991974|ref|ZP_11275193.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
gi|409937168|gb|EKN78613.1| RNA polymerase sigma factor [Arthrospira platensis str. Paraca]
Length = 332
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 82/129 (63%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + NL ++ L KE + + W+ AG+SE + + G ++++I++
Sbjct: 48 KKVQQMMNLLEVRDELTKELDRDPTPEEWSAKAGLSESEMTDIINRGRRAKQKMIEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 108 LVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 167
Query: 367 HARGIKIPV 375
++R I++P+
Sbjct: 168 NSRTIRLPI 176
>gi|148239880|ref|YP_001225267.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. WH 7803]
gi|147848419|emb|CAK23970.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 322
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 1/137 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + +LE + L EK G+A A+AAG+S LK+ L G +E
Sbjct: 29 QQEITLGRQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGRRAKE 88
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 89 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 148
Query: 359 SISKMVARHARGIKIPV 375
I++ +A +R I++P+
Sbjct: 149 GITRAIAEKSRTIRLPI 165
>gi|81299483|ref|YP_399691.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 7942]
gi|123557285|sp|Q31QG5.1|RPOD3_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD3
gi|81168364|gb|ABB56704.1| group2 RNA polymerase sigma factor SigD [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 29 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 88
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++
Sbjct: 89 MIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQA 148
Query: 360 ISKMVARHARGIKIPV 375
I++ +A AR I++P+
Sbjct: 149 ITRAIAEKARTIRLPI 164
>gi|372325327|ref|ZP_09519916.1| RpoD-like RNA polymerase sigma factor [Oenococcus kitaharae DSM
17330]
gi|366984135|gb|EHN59534.1| RpoD-like RNA polymerase sigma factor [Oenococcus kitaharae DSM
17330]
Length = 451
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K A G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 183 KEIGRVSLLNA-TQEVEIAKRIEKGG-ADGQRARQELAEANLRLVVSIAKRYVGRGMHFL 240
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 241 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMV 295
>gi|56750866|ref|YP_171567.1| RNA polymerase sigma factor SigD [Synechococcus elongatus PCC 6301]
gi|56685825|dbj|BAD79047.1| group2 RNA polymerase sigma factor RpoD3 [Synechococcus elongatus
PCC 6301]
Length = 326
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-WAQAAGVSERVLKQHLAFGWYCREE 299
E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + +
Sbjct: 35 EEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRK 94
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++
Sbjct: 95 MIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQA 154
Query: 360 ISKMVARHARGIKIPV 375
I++ +A AR I++P+
Sbjct: 155 ITRAIAEKARTIRLPI 170
>gi|116075287|ref|ZP_01472547.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
gi|116067484|gb|EAU73238.1| RNA polymerase sigma factor [Synechococcus sp. RS9916]
Length = 479
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 86/144 (59%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RL E E+++ + + LE + E ++G+ WA + ++ L G
Sbjct: 182 RLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEMPLIKFRRRLMLGR 241
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +
Sbjct: 242 RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATW 301
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L+
Sbjct: 302 WIRQAITRAIADQSRTIRLPVHLY 325
>gi|88808921|ref|ZP_01124430.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786863|gb|EAR18021.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 322
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 1/137 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE ++ L EK G+A A+AAG+S LK+ L G +E
Sbjct: 29 QQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGRRAKE 88
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 89 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 148
Query: 359 SISKMVARHARGIKIPV 375
I++ +A +R I++P+
Sbjct: 149 GITRAIAEKSRTIRLPI 165
>gi|67925121|ref|ZP_00518496.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67853040|gb|EAM48424.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 374
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E+++ VQ + +E K L++E + S A+A G + + + L G +
Sbjct: 78 AEEEVELAQQVQFLLEVEETKQRLKEELQRTPSKAECAEALGFETAKQFEHRLHKGRIAK 137
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 138 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 197
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 198 QAITRTIANDARTIRLPI 215
>gi|166364164|ref|YP_001656437.1| RNA polymerase sigma factor [Microcystis aeruginosa NIES-843]
gi|166086537|dbj|BAG01245.1| group 2 RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
Length = 328
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLETKEALSKQLGREPDRLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPI 171
>gi|390440883|ref|ZP_10229079.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
gi|389835810|emb|CCI33205.1| RNA polymerase sigma factor rpoD2 [Microcystis sp. T1-4]
Length = 328
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLDWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPI 171
>gi|428320222|ref|YP_007118104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428243902|gb|AFZ09688.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 357
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 83/140 (59%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ VQ + L+ ++ L++E + + A A G+SE L+Q
Sbjct: 59 LLTAAEEVELARRVQELVALDELEQRLQQELDRVPTKAELAAALGISETQLQQLRHQCQS 118
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +W
Sbjct: 119 AKRKMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPEKGYKFSTYAYWW 178
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+ I++ +A R I++PV
Sbjct: 179 IRQGITRTIANQGRTIRLPV 198
>gi|87123878|ref|ZP_01079728.1| Sigma-70 factor [Synechococcus sp. RS9917]
gi|86168447|gb|EAQ69704.1| Sigma-70 factor [Synechococcus sp. RS9917]
Length = 456
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E ++G+ WA + +
Sbjct: 152 LQEIGRIRLLRPDEEIELARKIADLLLLEELAAQFESDNGREPDTKEWAALVEMPVIKFR 211
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 212 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 271
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 272 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 302
>gi|422302967|ref|ZP_16390325.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|425467050|ref|ZP_18846334.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
gi|389792142|emb|CCI12123.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9806]
gi|389830277|emb|CCI27891.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9809]
Length = 328
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPI 171
>gi|298492420|ref|YP_003722597.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298234338|gb|ADI65474.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 389
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 85/134 (63%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ LE+E G+ S + A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVKDLQAALEEELGQQPSRSEVAAKFEMTEKQLESRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 216
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 217 RAIANDARTIRLPI 230
>gi|148238489|ref|YP_001223876.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp. WH
7803]
gi|147847028|emb|CAK22579.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. WH 7803]
Length = 355
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 103/190 (54%), Gaps = 20/190 (10%)
Query: 206 LSLPSEALQE--GLKQPTIFSAERALNSR--GRRLTIARN---------------EAEMS 246
+S+P+ A++ G QP +A+ SR G + + R+ E +
Sbjct: 10 VSVPTVAVKSAAGASQPAKSGPTKAMASRPSGTDVDLVRSYLRDIGRVPLLSHQQEITLG 69
Query: 247 KGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTR 305
+ VQ + +LE + L EK G+A A+AAG+S LK+ L G +E ++ +
Sbjct: 70 RQVQELMDLEATEAELQEKRGGEAVPAAELAKAAGLSAVQLKRKLQAGRRAKERMVAANL 129
Query: 306 PLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVA 365
LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+ I++ +A
Sbjct: 130 RLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGITRAIA 189
Query: 366 RHARGIKIPV 375
+R I++P+
Sbjct: 190 EKSRTIRLPI 199
>gi|88809912|ref|ZP_01125417.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
gi|88786102|gb|EAR17264.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. WH 7805]
Length = 355
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 83/137 (60%), Gaps = 1/137 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE ++ L EK G+A A+AAG+S LK+ L G +E
Sbjct: 63 QQEITLGRQVQELMELESVEAELQEKRGGEAVLAAELAKAAGLSAVQLKRKLQAGRRAKE 122
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 123 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 182
Query: 359 SISKMVARHARGIKIPV 375
I++ +A +R I++P+
Sbjct: 183 GITRAIAEKSRTIRLPI 199
>gi|425469578|ref|ZP_18848501.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
gi|389880547|emb|CCI38706.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9701]
Length = 328
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPDRLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPI 171
>gi|159904297|ref|YP_001551641.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9211]
gi|159889473|gb|ABX09687.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9211]
Length = 335
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + N+ E++ G VQ + LE ++ + G+ +L+ A AAG++ LK+
Sbjct: 37 RVPLLSNDQEITLGRHVQELMALENLEKDWQSTHGQKPNLDELASAAGLTVGALKKKFRL 96
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD RGYKFSTY
Sbjct: 97 GERAKERMVAANLRLVVSIAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYA 156
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 157 YWWIRQGITRAIAEKSRAIRLPI 179
>gi|425440995|ref|ZP_18821285.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
gi|389718430|emb|CCH97613.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9717]
Length = 328
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPI 171
>gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor SigD [Synechocystis sp. PCC 6803]
gi|383322044|ref|YP_005382897.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325213|ref|YP_005386066.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491097|ref|YP_005408773.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436364|ref|YP_005651088.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814461|ref|YP_007450913.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652792|dbj|BAA17711.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273396|dbj|BAK49883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271363|dbj|BAL28882.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274533|dbj|BAL32051.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277703|dbj|BAL35220.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958220|dbj|BAM51460.1| RNA polymerase sigma factor SigD [Bacillus subtilis BEST7613]
gi|451780430|gb|AGF51399.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 318
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 92/144 (63%), Gaps = 3/144 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E+ +K +Q V +L IK +L E + G+ S + WA+AA +S R L++ +
Sbjct: 19 RVPLLTHEEEIVYAKQIQQVVSLNEIKKSLAEGKDGEPVSPSEWAKAADLSIRELEKAIK 78
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 79 EGERAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTY 138
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 139 AYWWIRQAITRAIAEKSRTIRLPI 162
>gi|443329714|ref|YP_007378785.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682340|gb|AFZ61104.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 328
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 89/145 (61%), Gaps = 2/145 (1%)
Query: 235 RLTIARNEAEMS--KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+S K VQ + L+ K TL+K+ S AQ +SE +K+
Sbjct: 29 RVPLLTHEEEISSSKQVQQMITLQNKKETLKKQLNHEPSQKELAQYVQLSEMEVKEIFQK 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I + LV+ +A+ Y+G + F DL+Q G++G+ +G E+FD TRGYKFSTY
Sbjct: 89 GVQAKQKMIAANLRLVVSIAKKYQGRNVEFMDLIQEGSLGLERGVEKFDSTRGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPVPL 377
+WI + +++ +++ +R I++P+ L
Sbjct: 149 YWWISQGMTRAISQQSRTIRLPIHL 173
>gi|416388961|ref|ZP_11685251.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
gi|357264325|gb|EHJ13231.1| Cyanobacteria-specific RpoD-like sigma factor, type-2 @ Group 2 RNA
polymerase sigma factor [Crocosphaera watsonii WH 0003]
Length = 318
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+GK + + WA+AA +S + +
Sbjct: 20 RVPLLSHEEEILYAKRVQRLVNLEKLREEIIQETGKEPTNSQWAKAAKLSRKEFCSVVEA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|425435006|ref|ZP_18815466.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|425452052|ref|ZP_18831870.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|425458612|ref|ZP_18838100.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440755453|ref|ZP_20934655.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
gi|389675298|emb|CCH95580.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9432]
gi|389766335|emb|CCI08019.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 7941]
gi|389826317|emb|CCI23267.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9808]
gi|440175659|gb|ELP55028.1| RNA polymerase sigma factor [Microcystis aeruginosa TAIHU98]
Length = 328
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQRLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPI 171
>gi|332711345|ref|ZP_08431277.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332349894|gb|EGJ29502.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651122|gb|AEE81162.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 319
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+S G V+ + L+ +K +L ++ G+ + + WA A+ +++ LK +A
Sbjct: 20 RVPLLTHEQEISYGKKVKQLTTLKEVKESLVQQLGREPTFSEWATASCLTDSQLKSSIAV 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GESAKRKMVEANLRLVVAVAKKYIKRNLELLDLIQEGTIGLQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPI 162
>gi|443663597|ref|ZP_21133167.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
gi|159027100|emb|CAO89285.1| rpoD [Microcystis aeruginosa PCC 7806]
gi|443331874|gb|ELS46514.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa
DIANCHI905]
Length = 328
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEALSKQLGREPQHLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPI 171
>gi|428314272|ref|YP_007125249.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
gi|428255884|gb|AFZ21843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Microcoleus sp. PCC 7113]
Length = 319
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L+ +K +L +E G +L WA AA +S L H+
Sbjct: 20 RVPLLTHEQEILYGKQVQRLTALQDMKESLWQELGHEPTLEEWATAAELSPSELNSHINA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPI 162
>gi|428208337|ref|YP_007092690.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010258|gb|AFY88821.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 400
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 84/140 (60%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ + +E + L+K+ + + G+S++ L+ L G
Sbjct: 102 LLKADEEVELARRVRFLVEVEETQRGLQKQLKRQPNREELIAELGISDKQLEHQLYLGRV 161
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +W
Sbjct: 162 AKRKMIRSNLRLVVSIAKRYLNRGLPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 221
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I++P+
Sbjct: 222 IRQAITRAIANDARTIRLPI 241
>gi|428770639|ref|YP_007162429.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428684918|gb|AFZ54385.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 318
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 86/140 (61%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L E ++K +Q + LE+ + TL+K+ + S WA+AA +SE+ L ++ G
Sbjct: 23 LLTKEEEIVLAKQIQELVALEKKRETLKKKLEREPSKKEWAEAAKISEKNLDIKISRGEK 82
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD +GY+FSTY +W
Sbjct: 83 AKRKMVEANLRLVVSIAKKYLKHNLDLLDLIQEGTIGMQRGVEKFDPKKGYRFSTYAYWW 142
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A +R I++P+
Sbjct: 143 IRQAITRAIAEKSRAIRLPL 162
>gi|220906009|ref|YP_002481320.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanothece sp. PCC
7425]
gi|219862620|gb|ACL42959.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 372
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 85/134 (63%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + L +K L ++ G++A+L A A ++E+ L+ + G + ++I
Sbjct: 80 EIELARRVKYLVELSELKDQLGRQLGRSATLPEVAAAMNLTEQQLQIRIYRGQVAKSKMI 139
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +G+KFSTY +WIR+ I+
Sbjct: 140 RSNLRLVVSIAKRYLNRGVPFLDLVQEGALGLNRATEKFDPEKGFKFSTYAYWWIRQGIT 199
Query: 362 KMVARHARGIKIPV 375
+ +A +R I++P+
Sbjct: 200 RAIANDSRTIRLPI 213
>gi|428223283|ref|YP_007107453.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427996623|gb|AFY75318.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 393
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 87/147 (59%), Gaps = 3/147 (2%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESG---KAASLNCWAQAAGVSERVLKQHLA 291
RL A E E+++ + + LE + L ++ + +L WA + K L
Sbjct: 93 RLLRADEEIELARKIADLLQLEDKQRELAEQHDCDLEDVNLEDWAVEMDMPLDKFKNRLH 152
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY
Sbjct: 153 SGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTY 212
Query: 352 VQYWIRKSISKMVARHARGIKIPVPLF 378
+WIR++I++ +A +R I++PV L+
Sbjct: 213 ATWWIRQAITRAIADQSRTIRLPVHLY 239
>gi|406835430|ref|ZP_11095024.1| sigma-70 family RNA polymerase sigma factor [Schlesneria paludicola
DSM 18645]
Length = 565
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 25/150 (16%)
Query: 234 RRLTIARNEAEMSKG-----VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQ 288
RR A NEAE+S+ V++V LE +++ A + W +A KQ
Sbjct: 252 RRTAAAVNEAEVSRRELNDLVELV--LETPADFVDRVRRIMAKFDAWTRA--------KQ 301
Query: 289 HLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKF 348
HL+ G LV+ +A+ YR G+ F DL+Q GN G+++G E++++ RGYKF
Sbjct: 302 HLSGG----------NLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEYRRGYKF 351
Query: 349 STYVQYWIRKSISKMVARHARGIKIPVPLF 378
STY +WIR++I++ VA HAR I+IPV +F
Sbjct: 352 STYATWWIRQAITRAVADHARTIRIPVHMF 381
>gi|425452501|ref|ZP_18832318.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|425460781|ref|ZP_18840262.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443669300|ref|ZP_21134532.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
gi|159029420|emb|CAO90796.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389765706|emb|CCI08495.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 7941]
gi|389826523|emb|CCI22935.1| RNA polymerase sigma factor rpoD [Microcystis aeruginosa PCC 9808]
gi|443330428|gb|ELS45144.1| RNA polymerase sigma factor rpoD2 domain protein [Microcystis
aeruginosa DIANCHI905]
Length = 377
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E E++ V+ + E ++ L++ + + WA A + +ER L+ L G +
Sbjct: 81 AEEEIELAYLVKFLMEAEEVRQKLQENLHRPPTKTEWAIALELDNERQLENRLYRGRTAK 140
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 141 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 200
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A AR I++P+
Sbjct: 201 QAITRTIANDARTIRLPI 218
>gi|332708973|ref|ZP_08428943.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352162|gb|EGJ31732.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651120|gb|AEE81161.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 373
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 86/134 (64%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E ++++ V+ + ++ + +L+++ + + A A ++ER L+ +L G + ++I
Sbjct: 81 EVDLARRVKFLVEIDHLHNSLQEKLDRKPTKAEVAAAVEMTERQLEGNLYRGRVAKRKMI 140
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I+
Sbjct: 141 RSNLRLVVSIAKRYINRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQAIT 200
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 201 RTIANDARTIRLPI 214
>gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322965|ref|YP_005383818.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383326134|ref|YP_005386987.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492018|ref|YP_005409694.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384437286|ref|YP_005652010.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451815378|ref|YP_007451830.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1001398|dbj|BAA10020.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339274318|dbj|BAK50805.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359272284|dbj|BAL29803.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359275454|dbj|BAL32972.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359278624|dbj|BAL36141.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451781347|gb|AGF52316.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 345
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
Query: 220 PTIFSAERA---LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCW 275
P F+A+ L+ GR L E + K VQ + L K L G+ S W
Sbjct: 29 PPTFTADMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEW 88
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
A+AA +S L ++L G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +
Sbjct: 89 AEAADLSVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 148
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
G E+FD T+GYKFSTY +WIR++I++ +A+ R I++P+
Sbjct: 149 GVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPI 188
>gi|427706077|ref|YP_007048454.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427358582|gb|AFY41304.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 327
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 79/129 (61%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA SE +KQ +A G ++++I++
Sbjct: 43 KQVQQMMTLVEAKEALAKKLHREPSLPEWANHVKQSETDVKQTVAQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPV 375
R I++P+
Sbjct: 163 QGRTIRLPI 171
>gi|37523331|ref|NP_926708.1| RNA polymerase sigma factor SigC [Gloeobacter violaceus PCC 7421]
gi|35214335|dbj|BAC91703.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 362
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 229 LNSRGRRLTIARNE-AEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR + R+E E+++ VQ + L +K +L+ G S WA+AA V LK
Sbjct: 55 LQEIGRVPLLGRDEEVELAQQVQKLMKLTALKESLQTSLGSEYSDEQWAEAAKVGLFELK 114
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ + G ++++I++ LV+ +A+ Y+ G+ DL+Q G +G+ + E+FD T+GY+
Sbjct: 115 RQVLAGSRAKKKMIEANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERAVEKFDPTKGYR 174
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR+ I++ +A +R I++PV
Sbjct: 175 FSTYAYWWIRQGITRAIATQSRTIRLPV 202
>gi|434402958|ref|YP_007145843.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428257213|gb|AFZ23163.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 327
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 79/129 (61%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQHMMTLLEAKEALAKKLRREPSLPEWAADVNQSETDVKQTVTQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPV 375
R I++P+
Sbjct: 163 QGRTIRLPI 171
>gi|67922139|ref|ZP_00515654.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|67856039|gb|EAM51283.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
Length = 318
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + NLE+++ + +E+GK + + WA+AA +S + +
Sbjct: 20 RVPLLSHEEEILYAKRVQRLINLEKLREEIIQETGKEPTNSQWAKAAKLSRKEFCSVVEA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|320161271|ref|YP_004174495.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
gi|319995124|dbj|BAJ63895.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
Length = 409
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 64/90 (71%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L++ + GW RE LI + LV+ +A+ Y G G+PF DL+Q GN+G+++ ++FD+ RG
Sbjct: 161 LRRLIEDGWAAREHLITANSRLVISVAKKYMGRGVPFLDLIQEGNIGLIRATKKFDYRRG 220
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+KFSTY +WIR+++++ +A R I++PV
Sbjct: 221 HKFSTYATWWIRQAVTRAIADQGRTIRVPV 250
>gi|125602683|gb|EAZ42008.1| hypothetical protein OsJ_26557 [Oryza sativa Japonica Group]
Length = 497
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 82/134 (61%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
+ Q++ +E LE + G+ +L WA+A G+S + L+ + G CRE++ +S
Sbjct: 209 RTAQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFR 268
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +AR Y G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+SI K + +
Sbjct: 269 LVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFK 328
Query: 367 HARGIKIPVPLFLI 380
++R I++P ++ +
Sbjct: 329 NSRLIRLPESVYAL 342
>gi|407961401|dbj|BAM54641.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 328
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
Query: 220 PTIFSAERA---LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCW 275
P F+A+ L+ GR L E + K VQ + L K L G+ S W
Sbjct: 12 PPTFTADMVRSYLHEIGRVPLLTHEQEIILGKQVQQMMALLEHKKALADRLGREPSDPEW 71
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
A+AA +S L ++L G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +
Sbjct: 72 AEAADLSVTKLHRYLGQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLER 131
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
G E+FD T+GYKFSTY +WIR++I++ +A+ R I++P+
Sbjct: 132 GVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|422304379|ref|ZP_16391725.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
gi|389790495|emb|CCI13646.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9806]
Length = 416
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 75/125 (60%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELMAPMLEEWQAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PVPLF 378
PV L+
Sbjct: 258 PVHLY 262
>gi|307152078|ref|YP_003887462.1| RpoD subfamily RNA polymerase sigma-70 factor [Cyanothece sp. PCC
7822]
gi|306982306|gb|ADN14187.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7822]
Length = 328
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 104/177 (58%), Gaps = 15/177 (8%)
Query: 208 LPSEALQEGLKQPTIFSAERA---LNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEK 264
+P+ + ++PT FSA+ L+ GR + + +E E+ G QV +++ T LEK
Sbjct: 1 MPTAKVNPKNQKPT-FSADMVRTYLHEIGR-VPLLTHEQEIVYGKQV----QKMMTLLEK 54
Query: 265 ESGKA------ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGL 318
+ A SL WA +SE L + + G + ++I++ LV+ +A+ Y+
Sbjct: 55 KDELAIQLEREPSLTEWANHVQMSEEELNRAIQQGKRAKRKMIEANLRLVVAIAKKYQKR 114
Query: 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+ F DL+Q G++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ AR I++P+
Sbjct: 115 NMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPI 171
>gi|374854339|dbj|BAL57223.1| RNA polymerase primary sigma factor [uncultured Chloroflexi
bacterium]
gi|374855178|dbj|BAL58041.1| RNA polymerase primary sigma factor [uncultured Chloroflexi
bacterium]
Length = 405
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 64/90 (71%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L++ + GW RE LI + LV+ +A+ Y G G+PF DL+Q GN+G+++ ++FD+ RG
Sbjct: 157 LRKLIEDGWAAREHLITANSRLVISVAKKYMGRGVPFLDLIQEGNIGLIRATKKFDYRRG 216
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+KFSTY +WIR+++++ +A R I++PV
Sbjct: 217 HKFSTYATWWIRQAVTRAIADQGRTIRVPV 246
>gi|282900303|ref|ZP_06308254.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
gi|281194808|gb|EFA69754.1| Sigma 28 (Flagella/Sporulation) [Cylindrospermopsis raciborskii
CS-505]
Length = 399
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 85/134 (63%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ LE++ G + S + A ++E+ L+ L G + ++I
Sbjct: 107 EVELARRVRFLEEVKDLQAALEEQLGHSVSKSEVASKFDLNEKQLESRLYQGRVAKRKMI 166
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 167 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 226
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 227 RAIANDARTIRLPI 240
>gi|428315679|ref|YP_007113561.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428239359|gb|AFZ05145.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 319
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L + K L +E G+ + WAQA G+SE L++ +
Sbjct: 21 RVPLLTHEQEILYGKQVQRSTALHQEKNILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQ 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPI 163
>gi|425447372|ref|ZP_18827361.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
gi|389732078|emb|CCI03931.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9443]
Length = 328
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPI 171
>gi|332708935|ref|ZP_08428906.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332352477|gb|EGJ32046.1| RNA polymerase sigma factor, sigma-70 family//RpoD-like family
[Moorea producens 3L]
gi|332651118|gb|AEE81160.1| putative RNA polymerase sigma factor [Moorea producens 3L]
Length = 333
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI--KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + + K TL +E + + WA SE LK+ +
Sbjct: 35 RVPLLTHEQEIVYGKQVQQMMALLGEKATLAQELEREPTTEEWASYVNKSEAELKKAIDQ 94
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 95 GTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 154
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 155 YWWIRQAITRAIAQQARAIRLPI 177
>gi|425455107|ref|ZP_18834832.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
gi|389804051|emb|CCI17083.1| RNA polymerase sigma factor rpoD2 [Microcystis aeruginosa PCC 9807]
Length = 328
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + +L K L K+ G+ WA + +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQRMMSLLEAKEGLSKQLGREPQQLEWADSVNLSENELDRALKT 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 89 GDRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPI 171
>gi|282895663|ref|ZP_06303788.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
gi|281199357|gb|EFA74222.1| sigF (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9]
Length = 396
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 84/134 (62%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E++ V+ + ++ ++ LE++ G +A+ A ++E+ L+ L G + ++I
Sbjct: 104 EVELAHRVRFLEEVKDLQAALEEQFGHSATKGEIANKFDLNEKQLENRLYQGRVAKRKMI 163
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 164 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 223
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 224 RAIANDARTIRLPI 237
>gi|427712306|ref|YP_007060930.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427376435|gb|AFY60387.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 318
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ++A+L +T LE G+ SL WA A +S L + +
Sbjct: 20 RVPLLTHEQEILYGKQVQMLASLNETRTGLETALGREPSLEEWASQANLSPGELNEIIQG 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPI 162
>gi|406963199|gb|EKD89336.1| hypothetical protein ACD_34C00111G0002 [uncultured bacterium]
Length = 548
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 59/79 (74%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
LI++ LV+ +A+ Y G GI F DL+Q GN+G+L+ +FD TRG+KFSTY +WIR+S
Sbjct: 286 LIRANLRLVVSIAKRYLGRGISFLDLIQEGNLGLLRAVSKFDSTRGFKFSTYATWWIRQS 345
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A HAR I+IPV LF
Sbjct: 346 ISRYIAEHARTIRIPVHLF 364
>gi|47679387|gb|AAT36674.1| DNA-directed RNA polymerase sigma A subunit [Oenococcus oeni PSU-1]
Length = 465
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 197 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 254
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 255 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMV 309
>gi|428204839|ref|YP_007100465.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428012958|gb|AFY91074.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 324
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 91/144 (63%), Gaps = 3/144 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAG-VSERVLKQHLA 291
R+ + +E E+ K VQ L+ +K +L K+ G+ SL+ WA+A+G + L Q +A
Sbjct: 24 RVPLLTHEQEILFGKQVQRSIALQLVKDSLTKQLGREPSLDEWAKASGKLDNTQLTQAIA 83
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+ STY
Sbjct: 84 DGESAKRKIVEANLRLVVSIAKKYTKRNLELLDLIQEGTIGLHRGVEKFDPTKGYRLSTY 143
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+++R I++P+
Sbjct: 144 AYWWIRQAITRAIAQNSRNIRLPI 167
>gi|383761703|ref|YP_005440685.1| putative RNA polymerase sigma factor [Caldilinea aerophila DSM
14535 = NBRC 104270]
gi|381381971|dbj|BAL98787.1| putative RNA polymerase sigma factor [Caldilinea aerophila DSM
14535 = NBRC 104270]
Length = 433
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 64/91 (70%), Gaps = 6/91 (6%)
Query: 294 WYCR------EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
WY R E LIK+ LV+ +A+ Y G G+PF DL+Q GN+G+++ ++FD++RGYK
Sbjct: 189 WYVRDGQAAQEHLIKANSRLVVSVAKKYVGRGVPFLDLIQEGNIGLIRAVKKFDYSRGYK 248
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR+++++ +A R I++PV ++
Sbjct: 249 FSTYATWWIRQAVTRAIADQGRTIRVPVHMY 279
>gi|116073053|ref|ZP_01470315.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116068358|gb|EAU74110.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 321
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGK-AASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE +++ L+ ESG+ + A+ AG+S LK+ L G +E
Sbjct: 29 QQEITLGRQVQDLMELEALESELKSESGEDVVAPEALAKKAGLSGVQLKRKLQAGRRAKE 88
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 89 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 148
Query: 359 SISKMVARHARGIKIPV 375
I++ +A +R I++P+
Sbjct: 149 GITRAIAEKSRTIRLPI 165
>gi|347755938|ref|YP_004863502.1| RNA polymerase sigma factor RpoD/sigma-70 family RNA polymerase
sigma factor [Candidatus Chloracidobacterium
thermophilum B]
gi|347588456|gb|AEP12986.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Candidatus
Chloracidobacterium thermophilum B]
Length = 558
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 93/161 (57%), Gaps = 17/161 (10%)
Query: 222 IFSAERALNSRGRRLTI--ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAA 279
I +A+ AL + RR I A A++ + +V+A++E K LE S SL +
Sbjct: 252 IENAQAALKDKQRRARIDEAETRAQIEQAQKVIADIE--KRYLEPASRIKGSLREIFSST 309
Query: 280 GVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNY--RGLGIPFSDLLQAGNVGVLQGA 337
+E+ R E+I++ LV+ +A+NY R G+ FSDL+Q GN+G+++
Sbjct: 310 EEAEK-----------ARREMIEANLRLVVSIAKNYINRSRGLQFSDLIQEGNIGLMRAV 358
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
E+FD+ RGYKFSTY +WIR+++++ +A R I++PV +
Sbjct: 359 EKFDYRRGYKFSTYATWWIRQAVTRAIADQGRTIRVPVHMV 399
>gi|413932356|gb|AFW66907.1| hypothetical protein ZEAMMB73_346249 [Zea mays]
Length = 292
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 83/136 (61%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
M +Q + LE + L+ + G+ ++ WAQA G+S R L+ + G CRE++ +S
Sbjct: 1 MFSQIQNLMKLEGAQRNLQAQCGREPTVEEWAQAVGMSCRELQSCVRTGRRCREKMARSN 60
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ +AR Y G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+SI K +
Sbjct: 61 FRLVIHVARKYEGCGLDIQDLVQDGCCGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSI 120
Query: 365 ARHARGIKIPVPLFLI 380
+++R I++P ++ +
Sbjct: 121 FKNSRLIRLPESVYAL 136
>gi|218200736|gb|EEC83163.1| hypothetical protein OsI_28384 [Oryza sativa Indica Group]
Length = 537
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 81/132 (61%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLV 308
Q++ +E LE + G+ +L WA+A G+S + L+ + G CRE++ +S LV
Sbjct: 251 AQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCREKMARSNFRLV 310
Query: 309 LFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368
+ +AR Y G G+ DL+Q G G+++ E+F+ ++G +F TY +WIR+SI K + +++
Sbjct: 311 IHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQSIKKSIFKNS 370
Query: 369 RGIKIPVPLFLI 380
R I++P ++ +
Sbjct: 371 RLIRLPESVYAL 382
>gi|428773684|ref|YP_007165472.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428687963|gb|AFZ47823.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 328
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 84/129 (65%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ++ +L K L + + +L WAQAA + LK+ + G ++++I++
Sbjct: 43 KQVQIMMSLYAQKEELAENLDREPTLEEWAQAAEKTPAELKKLIHQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+G+KFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPV 375
AR I++P+
Sbjct: 163 QARTIRLPI 171
>gi|334119483|ref|ZP_08493569.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333458271|gb|EGK86890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 319
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L + K L +E G+ + WAQA G+SE L++ +
Sbjct: 21 RVPLLTHEQEILYGKQVQRSTALHQEKDILAEELGRDPTAAEWAQAVGLSEAQLQRTIEQ 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GERAKRQMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPI 163
>gi|116491026|ref|YP_810570.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni PSU-1]
gi|290890507|ref|ZP_06553582.1| hypothetical protein AWRIB429_0972 [Oenococcus oeni AWRIB429]
gi|419758826|ref|ZP_14285138.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB304]
gi|419857734|ref|ZP_14380437.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB202]
gi|419859523|ref|ZP_14382177.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni DSM 20252 = AWRIB129]
gi|421185425|ref|ZP_15642836.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB318]
gi|421188904|ref|ZP_15646236.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB419]
gi|421193631|ref|ZP_15650877.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB553]
gi|421195329|ref|ZP_15652537.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB568]
gi|421197442|ref|ZP_15654617.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB576]
gi|116091751|gb|ABJ56905.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni PSU-1]
gi|290479903|gb|EFD88552.1| hypothetical protein AWRIB429_0972 [Oenococcus oeni AWRIB429]
gi|399904281|gb|EJN91737.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB304]
gi|399964237|gb|EJN98891.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB419]
gi|399964606|gb|EJN99247.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB318]
gi|399971790|gb|EJO06029.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB553]
gi|399975051|gb|EJO09119.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB576]
gi|399975754|gb|EJO09789.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB568]
gi|410496540|gb|EKP88023.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni DSM 20252 = AWRIB129]
gi|410497205|gb|EKP88680.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB202]
Length = 458
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 190 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 247
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 248 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMV 302
>gi|255638784|gb|ACU19696.1| unknown [Glycine max]
Length = 207
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 108/199 (54%), Gaps = 32/199 (16%)
Query: 1 MGMGFRLN--LKWVSPVQS-HFFTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASY 57
+G GF LN L++ + + H FT S LS +S RE FN RLSF ST E+ +
Sbjct: 3 LGFGFGLNPRLRYCLLLHTPHSFTNSPLCLSPSSAGVRETCFNFTRLSFPSTFYEEGEAL 62
Query: 58 FQDPVKAYTCSFVNTQTVENDYSETEEIR----QKSTSCIGQ----------DASSRS-- 101
+D + + S +T+END EE + ++S S + + + S+ S
Sbjct: 63 QKDFGRVFAFSSSALETLENDSLGREETQVNKGKRSLSSVHKMIDNTQMPFGEVSTVSKK 122
Query: 102 -------DFRLLMENLDVLESTFADSDALRLEREILQQLGKLGALKLFNSHLSRIVKTSN 154
FRLLMENL VLE TF DS+ALRLE+ I+ QLGKLGAL+LFN LSR + TS
Sbjct: 123 FESFRAQHFRLLMENLCVLEETFVDSEALRLEKAIILQLGKLGALELFNVCLSRSLGTSL 182
Query: 155 VLDLSDVHTEEQKMNDSRD 173
V + +D K++D +D
Sbjct: 183 VSNYAD------KVDDYKD 195
>gi|118586868|ref|ZP_01544302.1| DNA-directed RNA polymerase RpoD, sigma subunit, Sigma-42
[Oenococcus oeni ATCC BAA-1163]
gi|71466858|emb|CAH41003.1| rpoD protein [Oenococcus oeni]
gi|118432700|gb|EAV39432.1| DNA-directed RNA polymerase RpoD, sigma subunit, Sigma-42
[Oenococcus oeni ATCC BAA-1163]
Length = 458
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 190 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 247
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 248 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMV 302
>gi|421186327|ref|ZP_15643720.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB418]
gi|399967280|gb|EJO01762.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB418]
Length = 458
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 190 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 247
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 248 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMV 302
>gi|22298374|ref|NP_681621.1| RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1]
gi|22294553|dbj|BAC08383.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 309
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 80/131 (61%)
Query: 245 MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKST 304
+ K VQ + L + L KE G+ A+ WA A ++ L L G ++++I++
Sbjct: 23 LGKQVQQMMALREKRDALTKELGREATFEEWAAACNLTPTELCNILKRGERAKQKMIEAN 82
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ +A+ Y+ + DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +
Sbjct: 83 LRLVVSVAKKYQKRNLELLDLVQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAI 142
Query: 365 ARHARGIKIPV 375
A+ AR I++P+
Sbjct: 143 AQQARTIRLPI 153
>gi|78183723|ref|YP_376157.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Synechococcus sp. CC9902]
gi|78168017|gb|ABB25114.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. CC9902]
Length = 332
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +E ++ LE G + + A+AA +S LK+ L
Sbjct: 34 RVPLLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQ 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 94 GHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 154 YWWIRQGITRAIAEKSRTIRLPI 176
>gi|425439972|ref|ZP_18820283.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
gi|389719676|emb|CCH96511.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9717]
Length = 416
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 75/125 (60%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELMAPMLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PVPLF 378
PV L+
Sbjct: 258 PVHLY 262
>gi|116071698|ref|ZP_01468966.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
gi|116065321|gb|EAU71079.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. BL107]
Length = 332
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + +E ++ LE G + + A+AA +S LK+ L
Sbjct: 34 RVPLLTHEQEITLGRQVQQLMEIETLEAELESRDGAKPARDQLAKAAELSTVQLKRKLQQ 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 94 GHRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 154 YWWIRQGITRAIAEKSRTIRLPI 176
>gi|428772429|ref|YP_007164217.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
stanieri PCC 7202]
gi|428686708|gb|AFZ46568.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
stanieri PCC 7202]
Length = 363
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGW 294
L A E ++++ V+ + + E + L + + S A A G+ +ER L L G
Sbjct: 64 LLTAEEEVDLAQSVKFLTDCEETQQKLHHKLQRTPSKMELAHAMGLETERQLDNRLYKGR 123
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +
Sbjct: 124 VAKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYW 183
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR++I++ +A +R I++P+
Sbjct: 184 WIRQAITRTIANDSRTIRLPI 204
>gi|421189689|ref|ZP_15647003.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB422]
gi|421190853|ref|ZP_15648137.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB548]
gi|399972779|gb|EJO06978.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB422]
gi|399973549|gb|EJO07714.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Oenococcus oeni AWRIB548]
Length = 458
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 77/115 (66%), Gaps = 2/115 (1%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + LN Q +++R+ K + G R+EL ++ LV+ +A+ Y G G+ F
Sbjct: 190 KEIGRVSLLNA-DQEVAIAKRIEKGG-SDGERARQELAEANLRLVVSIAKRYVGRGMHFL 247
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 248 DLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMV 302
>gi|113477826|ref|YP_723887.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110168874|gb|ABG53414.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 384
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 79/136 (58%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREE 299
+ E E++K +Q + E++ L + G+ + + A AAG +E L L +
Sbjct: 88 KEEIELAKLIQELVVFEKLPEKLANDLGRTPTKSEVAVAAGFTESQLDHRLHQCRTAKRR 147
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR+
Sbjct: 148 MISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQG 207
Query: 360 ISKMVARHARGIKIPV 375
I++ +A R I++PV
Sbjct: 208 ITRTIANQGRTIRLPV 223
>gi|434404640|ref|YP_007147525.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428258895|gb|AFZ24845.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 377
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 84/134 (62%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ +L E G+ AS A ++E+ L+ L G + ++I
Sbjct: 85 EVELARRVRFLEEIKDLQESLSTELGQPASKLQVANQLEMTEKQLESRLYQGRVAKRKMI 144
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 145 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 204
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 205 RAIANDARTIRLPI 218
>gi|87302644|ref|ZP_01085461.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
gi|87282988|gb|EAQ74945.1| RNA polymerase sigma factor [Synechococcus sp. WH 5701]
Length = 469
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL E E+++ + + LE + E+++G WA + +
Sbjct: 165 LQEIGRIRLLRPDEEIELARKIADLLLLEELAGQFEQDNGHYPDNKEWAVLVDMPPVKFR 224
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYK
Sbjct: 225 RRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYK 284
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A +R I++PV L+
Sbjct: 285 FSTYATWWIRQAITRAIADQSRTIRLPVHLY 315
>gi|229828460|ref|ZP_04454529.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
gi|229793054|gb|EEP29168.1| hypothetical protein GCWU000342_00522 [Shuttleworthia satelles DSM
14600]
Length = 614
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 70/104 (67%), Gaps = 5/104 (4%)
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+N AQ ++LK A G +++L ++ LV+ +A+ Y G G+ F DL+Q GN+
Sbjct: 358 MNLEAQI-----KILKNDSAVGERAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNL 412
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 413 GLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 456
>gi|443320707|ref|ZP_21049791.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442789590|gb|ELR99239.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 318
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + LE+ K LE+++ S WA+AA V+ L++ +
Sbjct: 20 RVPLLTHEEEIIYAKRVQKLVELEKCKHQLEEKTKTELSEAEWAKAANVTVAKLRKDVDA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEVAKRKMIEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|169883526|gb|ACA97858.1| RNA polymerase sigma factor [Microcystis aeruginosa PCC 7820]
Length = 416
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 75/125 (60%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PVPLF 378
PV L+
Sbjct: 258 PVHLY 262
>gi|425438187|ref|ZP_18818593.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|425444152|ref|ZP_18824209.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|425449157|ref|ZP_18829000.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|425462821|ref|ZP_18842288.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
gi|1710685|sp|P52322.1|RPOD_MICAE RecName: Full=RNA polymerase sigma factor rpoD1
gi|786173|dbj|BAA08853.1| sigma factor [Microcystis aeruginosa]
gi|1783286|dbj|BAA12850.1| principal sigma factor [Microcystis aeruginosa]
gi|389676661|emb|CCH94329.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9432]
gi|389730582|emb|CCI05187.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9443]
gi|389764330|emb|CCI09341.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 7941]
gi|389824092|emb|CCI27286.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9808]
Length = 416
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 75/125 (60%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PVPLF 378
PV L+
Sbjct: 258 PVHLY 262
>gi|359462714|ref|ZP_09251277.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 331
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 81/142 (57%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L E ++ + VQ + LE +K L + G+ S+ W +AA + L+ L G
Sbjct: 36 LLTPEQELQLGREVQTMVRLEAVKDQLAQSCGEEPSMETWTKAADLEIAELQTLLEKGHK 95
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++++I + LV+ +A+ YR + DL+Q G +G+ + AE++D RG++FSTY +W
Sbjct: 96 AKQKMITANLRLVVTIAKKYRDRNLELLDLIQEGTLGLERAAEKYDPQRGFRFSTYAYWW 155
Query: 356 IRKSISKMVARHARGIKIPVPL 377
IR+ I++ +A R I++P+ L
Sbjct: 156 IRQGITRAIAEQGRTIRLPIHL 177
>gi|300865041|ref|ZP_07109868.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
gi|300336978|emb|CBN55018.1| RNA polymerase sigma factor [Oscillatoria sp. PCC 6506]
Length = 334
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 80/129 (62%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L KE + + WA +SE LK+ + G ++++I++
Sbjct: 50 KQVQQMMQLLEAKEELAKELRREPTEVEWALQVQLSEAELKRLMHQGRRAKQKMIEANLR 109
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 110 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 169
Query: 367 HARGIKIPV 375
HAR I++P+
Sbjct: 170 HARTIRLPI 178
>gi|425454830|ref|ZP_18834556.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
gi|159026614|emb|CAO86546.1| rpoD1 [Microcystis aeruginosa PCC 7806]
gi|389804393|emb|CCI16640.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9807]
Length = 416
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 75/125 (60%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A L W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PVPLF 378
PV L+
Sbjct: 258 PVHLY 262
>gi|428320421|ref|YP_007118303.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
gi|428244101|gb|AFZ09887.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillatoria
nigro-viridis PCC 7112]
Length = 334
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 229 LNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L+ GR + R E + K VQ + L K L KE + + WA ++E L
Sbjct: 31 LHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELS 90
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYK
Sbjct: 91 RILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 150
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A+HAR I++P+
Sbjct: 151 FSTYAYWWIRQAITRAIAQHARTIRLPI 178
>gi|428768890|ref|YP_007160680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Cyanobacterium
aponinum PCC 10605]
gi|428683169|gb|AFZ52636.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanobacterium
aponinum PCC 10605]
Length = 363
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCR 297
A E ++ V+ +++ E + L ++ + S A+A G+ SER L L G +
Sbjct: 67 AEEEVNLAYAVKFLSDCEEKQQELHRQLERTPSKMELAKAMGLESERQLDNRLYKGRTAK 126
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR
Sbjct: 127 RKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIR 186
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A +R I++P+
Sbjct: 187 QAITRTIANDSRTIRLPI 204
>gi|334118426|ref|ZP_08492515.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
gi|333459433|gb|EGK88046.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Microcoleus
vaginatus FGP-2]
Length = 334
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 229 LNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L+ GR + R E + K VQ + L K L KE + + WA ++E L
Sbjct: 31 LHEIGRVPLLTREEEIVFGKQVQQMMKLIEAKQALAKEWQRDLTNQEWAAEMELTEPELS 90
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ L G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYK
Sbjct: 91 RILHIGRRAKQKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 150
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A+HAR I++P+
Sbjct: 151 FSTYAYWWIRQAITRAIAQHARTIRLPI 178
>gi|298490639|ref|YP_003720816.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298232557|gb|ADI63693.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 327
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 78/129 (60%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ SL WA SE +KQ +A G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEVLAKKLDHEPSLPEWAAHVNQSETEVKQTVAQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPV 375
R I++P+
Sbjct: 163 QGRTIRLPI 171
>gi|428205040|ref|YP_007100666.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428013159|gb|AFY91275.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 335
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 84/137 (61%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E K VQ + L K L K+ + +L WA+ +S++ L++ L G ++++
Sbjct: 44 QEIVFGKQVQQMIALVTAKENLAKQLQREPTLQEWAELMHLSDKALQKQLLAGQQAKQKM 103
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRG++FSTY +WIR+ +
Sbjct: 104 IEANLRLVVAVAKKYQKRNLDFLDLIQEGTLGLERGVEKFDPTRGFRFSTYAYWWIRQGV 163
Query: 361 SKMVARHARGIKIPVPL 377
++ +A+ +R I++P+ +
Sbjct: 164 TRAIAQQSRTIRLPIHM 180
>gi|428226189|ref|YP_007110286.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427986090|gb|AFY67234.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 318
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ ++ L+ I+ L + + + WA+AAGVSE L+Q +
Sbjct: 20 RVPLLTHEQEILYGKQVQRLSGLQSIREGLVERWDREPTSTEWAEAAGVSEADLEQVIQE 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GELAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPI 162
>gi|354565375|ref|ZP_08984550.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353549334|gb|EHC18776.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 327
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 79/129 (61%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEALVKKLRREPSLEEWAAHVKKSESEVKQTVQQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPV 375
R I++P+
Sbjct: 163 QGRTIRLPI 171
>gi|449451030|ref|XP_004143265.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
gi|449482444|ref|XP_004156283.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
[Cucumis sativus]
Length = 562
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 86/141 (60%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L A+ E+E+ +Q + L+ +K L+ + + +L WA+A G++ + L+ L
Sbjct: 260 KKLLTAQEESELIVQIQDLMILDNVKARLQSQFDREPTLVEWAEALGITCQHLQSQLHVF 319
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
RE+LI + +V+ +A+ Y+G G+ DLLQ G++G+++ E+F G +F +Y
Sbjct: 320 QTSREKLINANLRMVVHIAKQYQGRGLSLHDLLQVGSLGLMKSVEKFKPQAGCRFGSYAY 379
Query: 354 YWIRKSISKMVARHARGIKIP 374
+WIR SI+K + +H+R I++P
Sbjct: 380 WWIRHSITKAIFQHSRTIRLP 400
>gi|428211704|ref|YP_007084848.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
gi|428000085|gb|AFY80928.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Oscillatoria acuminata PCC 6304]
Length = 318
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 83/135 (61%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E + K VQ ++ L +K TL ++ G + W+QAAG+S L+Q + G + ++
Sbjct: 28 QEIVLGKQVQHLSLLHEMKETLTEQFGHEPTDVEWSQAAGLSLVELQQAIEQGETAKRKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
+++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I
Sbjct: 88 VEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAI 147
Query: 361 SKMVARHARGIKIPV 375
++ +A R I++P+
Sbjct: 148 TRAIAEKGRTIRLPI 162
>gi|440680165|ref|YP_007154960.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428677284|gb|AFZ56050.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 327
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 77/129 (59%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ G SL WA SE + Q + G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEALSKKLGHEPSLTEWATHVNQSENEVTQTVTQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPV 375
R I++P+
Sbjct: 163 QGRTIRLPI 171
>gi|116074383|ref|ZP_01471645.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
gi|116069688|gb|EAU75440.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9916]
Length = 341
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGK-AASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE +++ L+ ESG+ + A+ AG+S LK+ L G +E
Sbjct: 49 QQEITLGRQVQDLMELEALESELKSESGEEVVAPEALAKKAGLSGVQLKRKLQAGRRAKE 108
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 109 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 168
Query: 359 SISKMVARHARGIKIPV 375
I++ +A +R I++P+
Sbjct: 169 GITRAIAEKSRTIRLPI 185
>gi|434395299|ref|YP_007130246.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267140|gb|AFZ33086.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 318
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L+ IK +L + + +L WA +AG+ L + +A
Sbjct: 20 RVPLLTHEQEILYGKQVQRSTALQEIKESLSAQLNREPTLEEWAASAGLESAELSKAIAL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPI 162
>gi|376003181|ref|ZP_09780996.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
gi|375328506|emb|CCE16749.1| group 2 RNA polymerase sigma factor sigB (RpoD family) [Arthrospira
sp. PCC 8005]
Length = 332
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 83/129 (64%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L ++ L KE + + W+ AG+SE + + + G ++++I++
Sbjct: 48 KKVQQMMSLLEMRDELTKELDRDPTAAEWSAKAGLSESEMTEIMNRGRRAKQKMIEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 108 LVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 167
Query: 367 HARGIKIPV 375
++R I++P+
Sbjct: 168 NSRTIRLPI 176
>gi|170076992|ref|YP_001733630.1| group II sigma-70 type sigma factor [Synechococcus sp. PCC 7002]
gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp. PCC 7002]
gi|169884661|gb|ACA98374.1| Group II sigma-70 type sigma factor (RpoD family) [Synechococcus
sp. PCC 7002]
Length = 365
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGV-SERVLKQHLAFGWYCREEL 300
E +++ V+ + + E + L+++ G++ + WA G+ + + L L G + ++
Sbjct: 72 EIQLAHSVKFLNDAEERRLELQEQLGRSPTNEEWASVLGLETVKQLNSALYKGRVAKRKM 131
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR++I
Sbjct: 132 IRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPNKGYKFSTYAYWWIRQAI 191
Query: 361 SKMVARHARGIKIPV 375
++ +A AR I++P+
Sbjct: 192 TRTIANDARTIRLPI 206
>gi|352093658|ref|ZP_08954829.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679998|gb|EHA63130.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 321
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGK-AASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + +LE ++ L+ + G+ + A+AAGVS LK+ L G +E
Sbjct: 29 QQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAAQLKRKLQAGRRAKE 88
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 89 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 148
Query: 359 SISKMVARHARGIKIPV 375
I++ +A +R I++P+
Sbjct: 149 GITRAIAEKSRTIRLPI 165
>gi|354565057|ref|ZP_08984233.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
gi|353550183|gb|EHC19622.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Fischerella sp.
JSC-11]
Length = 389
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 81/134 (60%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + I+ L +E G + A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVNEIQAALRQELGHQPTKASIAAHLQITEKQLENRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 216
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 217 RAIANDARTIRLPI 230
>gi|359457298|ref|ZP_09245861.1| RNA polymerase sigma factor [Acaryochloris sp. CCMEE 5410]
Length = 327
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L ++ T E G+ S WA A +S L+ L
Sbjct: 29 RVPLLTHEEEIVFGKQVQAMMALLDLQKTEMDELGREPSSEEWAAKANLSPSQLELSLHQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 89 GQQAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPI 171
>gi|75908113|ref|YP_322409.1| RNA polymerase sigma factor SigD [Anabaena variabilis ATCC 29413]
gi|75701838|gb|ABA21514.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 332
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L+ ++ L + G+ S+ WA+AA ++ L +A
Sbjct: 34 RVPLLSHEEEIRYGKQVQRSTTLQEVREELATQLGREPSIEEWAKAANINSADLLGAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I++P+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPI 176
>gi|300868245|ref|ZP_07112876.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
gi|300333769|emb|CBN58060.1| RNA polymerase sigma factor SigD [Oscillatoria sp. PCC 6506]
Length = 319
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L K L E G+ + WA+AAG+SE L++ +
Sbjct: 21 RVPLLTHEQEILYGKQVQRTTALHEAKNALALELGRDPTRTEWAEAAGLSETELQRTIHA 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GERAKRMMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPI 163
>gi|269215371|ref|ZP_06159225.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
gi|269131227|gb|EEZ62301.1| RNA polymerase sigma factor RpoD [Slackia exigua ATCC 700122]
Length = 383
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 84/133 (63%), Gaps = 6/133 (4%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCW-AQAAGV-----SERVLKQHLAFGWYCREELIK 302
V ++ E I ++ E+G AA+ A+ G+ +R L + A G +++LI+
Sbjct: 92 VPLLTAAEEIDLAMKIEAGVAATAELERAEDEGIELNRRDKRRLTRVEAVGLDAKQQLIE 151
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 152 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 211
Query: 363 MVARHARGIKIPV 375
+A AR I+IPV
Sbjct: 212 AIADQARTIRIPV 224
>gi|402829507|ref|ZP_10878383.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
gi|402284488|gb|EJU32991.1| RNA polymerase sigma factor RpoD [Slackia sp. CM382]
Length = 394
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 84/133 (63%), Gaps = 6/133 (4%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCW-AQAAGV-----SERVLKQHLAFGWYCREELIK 302
V ++ E I ++ E+G AA+ A+ G+ +R L + A G +++LI+
Sbjct: 103 VPLLTAAEEIDLAMKIEAGVAATAELERAEDEGIELNRRDKRRLTRVEAVGLDAKQQLIE 162
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 163 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 222
Query: 363 MVARHARGIKIPV 375
+A AR I+IPV
Sbjct: 223 AIADQARTIRIPV 235
>gi|428305801|ref|YP_007142626.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428247336|gb|AFZ13116.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 373
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 83/140 (59%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E +++ VQ + +E I+ LE + S A++ G++E+ L L
Sbjct: 75 LLKAEEEVDLANQVQFILQIEEIEERLEAQLNHKPSKAEIAESLGMNEKQLDHRLYQSRV 134
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+ F DL+Q G +G+ + AE+FD +GYKFSTY +W
Sbjct: 135 AKRKMIRSNLRLVVSIAKRYLNRGVAFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 194
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A +R I++P+
Sbjct: 195 IRQAITRTIANDSRTIRLPI 214
>gi|255076341|ref|XP_002501845.1| predicted protein [Micromonas sp. RCC299]
gi|226517109|gb|ACO63103.1| predicted protein [Micromonas sp. RCC299]
Length = 595
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 88/140 (62%), Gaps = 1/140 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E E++K +Q + L + LE+E+G K + WA ++E+ L++ L G + +
Sbjct: 290 EVELAKRIQDLMYLNSVCERLEEENGGKEPTRFMWAIECNITEQELERRLEEGKRAKNAM 349
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I++ LV+ +A+ Y + F DL+Q G VG+++GAE+FD RGYKFSTY +WIR+++
Sbjct: 350 IQANLRLVVSIAKRYANKSMSFQDLIQEGCVGLIRGAEKFDFKRGYKFSTYAHWWIRQAV 409
Query: 361 SKMVARHARGIKIPVPLFLI 380
++ ++ +R I++PV LF I
Sbjct: 410 TRSISDQSRTIRLPVHLFEI 429
>gi|425472577|ref|ZP_18851418.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
gi|389881323|emb|CCI38113.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9701]
Length = 416
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 75/125 (60%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A + W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELTAPMVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PVPLF 378
PV L+
Sbjct: 258 PVHLY 262
>gi|113954561|ref|YP_729335.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
gi|113881912|gb|ABI46870.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. CC9311]
Length = 335
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + +LE ++ L ++ G+ + A+AAGVS LK+ L G +E
Sbjct: 43 QQEITLGRQVQELMDLEALEAELKDQRGGEEVAREEVAKAAGVSAAQLKRKLQAGRRAKE 102
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 103 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 162
Query: 359 SISKMVARHARGIKIPV 375
I++ +A +R I++P+
Sbjct: 163 GITRAIAEKSRTIRLPI 179
>gi|86608149|ref|YP_476911.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556691|gb|ABD01648.1| RNA polymerase sigma factor, group 1 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 361
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 229 LNSRGRRLTIAR-NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
LN+ GR I E E+S+ +Q +++ + ++ G+ S A+A +S L+
Sbjct: 56 LNTIGRVPRIDHAEEIELSRKIQQKLLIDQARQEWRQQRGEDPSDEALAEALQISVSTLR 115
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ G + +LI + LV+ +A+ Y G+PF DL+Q GN+G+++ E+F+ RG++
Sbjct: 116 SRIRQGEQAQRKLINANLRLVVSVAKKYLNRGVPFLDLIQEGNIGLIRATEKFNAERGFR 175
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR+ I++ +A AR I++PV
Sbjct: 176 FSTYAHWWIRQGITRCIANQARTIRLPV 203
>gi|86607034|ref|YP_475797.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
gi|86555576|gb|ABD00534.1| RNA polymerase sigma factor RpoD [Synechococcus sp. JA-3-3Ab]
Length = 404
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 92/156 (58%), Gaps = 6/156 (3%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESG-----KAASLNCWAQAAGVS 282
L GR RL A E E+++ + + LER + + + G + WA+ +S
Sbjct: 95 LQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPETLWAEEVKMS 154
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
++ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH
Sbjct: 155 LPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 214
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 215 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 250
>gi|254421571|ref|ZP_05035289.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
gi|196189060|gb|EDX84024.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7335]
Length = 390
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 88/149 (59%), Gaps = 8/149 (5%)
Query: 235 RLTIARNEAEMSKGVQV------VANLERIKTTLEKESGKAASLNC--WAQAAGVSERVL 286
R+ + +E E+ G QV +A E + L + G+ A ++ WA AA + E L
Sbjct: 85 RVPLLSHEDEIVLGKQVQKMMALLAIKEELAAKLSEAEGEEAEVSNADWAAAASIPESEL 144
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
H+ G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD +GY
Sbjct: 145 DHHMRRGQRSKRKMIEANLRLVVAVAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPMKGY 204
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPV 375
KFSTY +WIR++I++ +A+ AR I++P+
Sbjct: 205 KFSTYAYWWIRQAITRAIAQQARTIRLPI 233
>gi|428301525|ref|YP_007139831.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428238069|gb|AFZ03859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 387
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 84/140 (60%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ + + L+++SG S A ++ER L+ L G
Sbjct: 89 LLKADEEVELARRVRFLEEWREAQAALKEKSGNQPSKAEVAAEFSLTERQLENRLYQGRV 148
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + +E+FD +GYKFSTY +W
Sbjct: 149 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWW 208
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I++P+
Sbjct: 209 IRQAITRAIANDARTIRLPI 228
>gi|154484558|ref|ZP_02027006.1| hypothetical protein EUBVEN_02272 [Eubacterium ventriosum ATCC
27560]
gi|149734406|gb|EDM50323.1| RNA polymerase sigma factor RpoD [Eubacterium ventriosum ATCC
27560]
Length = 429
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 62/80 (77%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 191 AKEKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 250
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+S+++ +A HAR I++PV
Sbjct: 251 IRQSVTRALADHARTIRVPV 270
>gi|427419588|ref|ZP_18909771.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425762301|gb|EKV03154.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 391
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 83/140 (59%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ +A++E + + +E + + A A SE + L +
Sbjct: 93 LLKADEEIELARQVKFLADVEALSKKMGEELKRTPTRLEMANALHCSEADFQHRLQYARS 152
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +W
Sbjct: 153 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWW 212
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+ I++ +A AR I++P+
Sbjct: 213 IRQGITRTIANDARTIRLPI 232
>gi|17231292|ref|NP_487840.1| RNA polymerase sigma factor [Nostoc sp. PCC 7120]
gi|8489801|gb|AAF75758.1|AF262217_2 group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
gi|17132934|dbj|BAB75499.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120]
Length = 327
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 79/129 (61%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPV 375
R I++P+
Sbjct: 163 QGRTIRLPI 171
>gi|254415890|ref|ZP_05029647.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196177317|gb|EDX72324.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 352
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G VQ + L K L + + ++ WA + E LK+ +
Sbjct: 54 RVPLLTHEQEIVYGKQVQQMMPLLEAKDALAETLEREPTMQEWADHVDLEESALKKIINQ 113
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 114 GTRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 173
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 174 YWWIRQAITRAIAQQARAIRLPI 196
>gi|427709274|ref|YP_007051651.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361779|gb|AFY44501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 377
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 85/140 (60%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ + + I+ L+++ G+ + A ++E+ L+ L G
Sbjct: 79 LLKADEEVELARRVRFLEEVREIQAALQEQLGQQPTKVQVAAQLDLTEKQLESRLYQGRV 138
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +W
Sbjct: 139 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 198
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I++P+
Sbjct: 199 IRQAITRAIANDARTIRLPI 218
>gi|75908126|ref|YP_322422.1| RNA polymerase sigma factor [Anabaena variabilis ATCC 29413]
gi|75701851|gb|ABA21527.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 327
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 79/129 (61%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L K L K+ + SL WA SE +KQ + G ++++I++
Sbjct: 43 KQVQQMMSLIDAKEALAKKLDREPSLPEWADHVQKSETEVKQTVTQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPV 375
R I++P+
Sbjct: 163 QGRTIRLPI 171
>gi|226185420|dbj|BAH33524.1| RNA polymerase sigma factor SigA [Rhodococcus erythropolis PR4]
Length = 452
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 27/160 (16%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q LA
Sbjct: 141 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYAVQIMQDLADKGEKLPA 199
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 200 AQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 259
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
D+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 260 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 299
>gi|86609652|ref|YP_478414.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558194|gb|ABD03151.1| RNA polymerase sigma factor RpoD [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 403
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 92/156 (58%), Gaps = 6/156 (3%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESG-----KAASLNCWAQAAGVS 282
L GR RL A E E+++ + + LER + + + G + WA+ +S
Sbjct: 94 LQEIGRIRLLRADEEIELARKIADLLELERAREAVFQRMGLWSDPEEVPDTLWAEEVKMS 153
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
++ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH
Sbjct: 154 LPEFRRRLHRGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDH 213
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 214 EKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 249
>gi|427737532|ref|YP_007057076.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427372573|gb|AFY56529.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 330
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ ++ V+ + L ++K L ++S SL+ WA A ++ L++ L
Sbjct: 32 RVPLLSREEEIFFAQRVKQLMELLQVKEDLTEKSSSEPSLSTWANAVEMTPTQLQETLDN 91
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G R+++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD +GYKFSTY
Sbjct: 92 GEIARQKMIEANLRLVVAIAKKYQHRNLEFVDLIQEGTLGLQRGVEKFDPDKGYKFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ + + +R I++P+
Sbjct: 152 YWWIRQAITRALDQKSRSIRLPI 174
>gi|427720859|ref|YP_007068853.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427353295|gb|AFY36019.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 327
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 78/129 (60%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + SL WA E +KQ +A G ++++I++
Sbjct: 43 KQVQQMMTLLDAKEDLAKKLHREPSLEEWANLVHQPETEVKQTVAQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPV 375
R I++P+
Sbjct: 163 QGRTIRLPI 171
>gi|390438739|ref|ZP_10227182.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
gi|389837853|emb|CCI31306.1| RNA polymerase sigma factor rpoD1 [Microcystis sp. T1-4]
Length = 416
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 75/125 (60%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A + W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELTAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PVPLF 378
PV L+
Sbjct: 258 PVHLY 262
>gi|363420387|ref|ZP_09308479.1| RNA polymerase sigma factor [Rhodococcus pyridinivorans AK37]
gi|359735629|gb|EHK84586.1| RNA polymerase sigma factor [Rhodococcus pyridinivorans AK37]
Length = 457
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 27/160 (16%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q LA
Sbjct: 146 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATHMLQQLAAKGEKLPV 204
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 205 AQRRDLNWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
D+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 304
>gi|443323268|ref|ZP_21052276.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
gi|442787006|gb|ELR96731.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Gloeocapsa sp. PCC 73106]
Length = 328
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+S G QV + +L K L K+ G+ A+ WAQ + L++
Sbjct: 29 RVPLLTPEQEISYGKQVQKMMSLIEAKEKLNKQLGREANKQEWAQYVQMDPEELEKTQQK 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+G+KFSTY
Sbjct: 89 GQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGFKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ R I++P+
Sbjct: 149 YWWIRQAITRAIAQQGRTIRLPI 171
>gi|296269171|ref|YP_003651803.1| RpoD subfamily RNA polymerase sigma-70 [Thermobispora bispora DSM
43833]
gi|296091958|gb|ADG87910.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobispora
bispora DSM 43833]
Length = 367
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 70/102 (68%)
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
C +AAG+ L+ + G ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+
Sbjct: 109 CEKKAAGIECPELEDLVWEGIRAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL 168
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 169 IRAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 210
>gi|320159820|ref|YP_004173044.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
gi|319993673|dbj|BAJ62444.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
Length = 396
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 85/135 (62%), Gaps = 4/135 (2%)
Query: 244 EMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSER---VLKQHLAFGWYCREEL 300
EMS+ V ++++ E ++ E G+AA +A +S + L+ + G RE L
Sbjct: 105 EMSR-VPLLSSEEEVELAKRIERGRAAKKELTRNSARLSPQRRGELEAQIQDGESAREHL 163
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
IK+ LV+ +A+ Y G G+PF DL+Q GN+G+++ E++++ RG++FSTY +WIR++I
Sbjct: 164 IKANTRLVVSIAKRYIGRGVPFLDLIQEGNLGLMKAVEKYEYQRGFRFSTYATWWIRQTI 223
Query: 361 SKMVARHARGIKIPV 375
++ +A R I++PV
Sbjct: 224 TRSIADQGRTIRVPV 238
>gi|352095348|ref|ZP_08956451.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
gi|351679359|gb|EHA62501.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Synechococcus sp.
WH 8016]
Length = 335
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTLEKESGK-AASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + +LE ++ L+ + G+ + A+AAGVS LK+ L G +E
Sbjct: 43 QQEITLGRQVQELMDLEALEAELKDQRGEDQVAREEVAKAAGVSAAQLKRKLQAGRRAKE 102
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 103 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 162
Query: 359 SISKMVARHARGIKIPV 375
I++ +A +R I++P+
Sbjct: 163 GITRAIAEKSRTIRLPI 179
>gi|383823557|ref|ZP_09978747.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
gi|383338836|gb|EID17195.1| RNA polymerase sigma factor [Mycobacterium xenopi RIVM700367]
Length = 527
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 282 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 341
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 342 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 374
>gi|443327898|ref|ZP_21056505.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
gi|442792509|gb|ELS01989.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Xenococcus sp. PCC 7305]
Length = 318
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 83/135 (61%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E +K VQ L +IK +L+++ G+ + + WA+ A +S + LK L G + ++
Sbjct: 28 EEIHYAKRVQREIALVKIKDSLQEKLGQEPTYSQWAKEAKLSVKELKTTLEAGEAAKRKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
+++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I
Sbjct: 88 VEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAI 147
Query: 361 SKMVARHARGIKIPV 375
++ +A R I++P+
Sbjct: 148 TRAIAEKGRTIRLPI 162
>gi|229491308|ref|ZP_04385134.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|453070925|ref|ZP_21974152.1| RNA polymerase sigma factor [Rhodococcus qingshengii BKS 20-40]
gi|229321847|gb|EEN87642.1| RNA polymerase sigma factor RpoD [Rhodococcus erythropolis SK121]
gi|452760008|gb|EME18351.1| RNA polymerase sigma factor [Rhodococcus qingshengii BKS 20-40]
Length = 430
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 92/168 (54%), Gaps = 33/168 (19%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA 291
AR +AE++ A+ + ++ L K+ GK A LN + AG+ + Q LA
Sbjct: 117 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYAVQIMQDLA 169
Query: 292 -------------FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 170 DKGEKLPAAQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 229
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 230 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 277
>gi|145224520|ref|YP_001135198.1| RNA polymerase sigma factor [Mycobacterium gilvum PYR-GCK]
gi|315444851|ref|YP_004077730.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
gi|145217006|gb|ABP46410.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium gilvum
PYR-GCK]
gi|315263154|gb|ADT99895.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium gilvum
Spyr1]
Length = 488
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 74/121 (61%), Gaps = 10/121 (8%)
Query: 270 ASLNCWAQAAGVSERVLK----QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLG 319
A L C A +E+ K Q + W CR+ L+++ LV+ LA+ Y G G
Sbjct: 215 AGLYCTQLMAEFAEKGEKLTTAQRRDYMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRG 274
Query: 320 IPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFL 379
+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 275 MAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 334
Query: 380 I 380
+
Sbjct: 335 V 335
>gi|226366217|ref|YP_002784000.1| RNA polymerase sigma factor [Rhodococcus opacus B4]
gi|226244707|dbj|BAH55055.1| RNA polymerase sigma factor SigA [Rhodococcus opacus B4]
gi|254553058|dbj|BAH85841.1| RNA polymerase sigma A factor [Rhodococcus opacus]
Length = 457
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 27/160 (16%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 146 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELSDSGEKLPA 204
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 205 AQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
D+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 304
>gi|166368188|ref|YP_001660461.1| RNA polymerase sigma factor RpoD [Microcystis aeruginosa NIES-843]
gi|425464857|ref|ZP_18844167.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
gi|166090561|dbj|BAG05269.1| principal RNA polymerase sigma factor [Microcystis aeruginosa
NIES-843]
gi|389833005|emb|CCI22864.1| RNA polymerase sigma factor rpoD1 [Microcystis aeruginosa PCC 9809]
Length = 416
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 75/125 (60%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
L IK L K A + W + K+ L G +E++++S LV+ +A+
Sbjct: 138 KLSDIKAYLGKTELMAPLVEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAK 197
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++
Sbjct: 198 KYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRL 257
Query: 374 PVPLF 378
PV L+
Sbjct: 258 PVHLY 262
>gi|414079485|ref|YP_007000909.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
gi|413972764|gb|AFW96852.1| RpoD family RNA polymerase sigma factor SigE [Anabaena sp. 90]
Length = 389
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 83/134 (61%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + ++ ++ LE + G S A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVKELQAALELQLGAQPSKVQVASQLEITEKQLESRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + +E+FD +GYKFSTY +WIR++I+
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRASEKFDPDKGYKFSTYAYWWIRQAIT 216
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 217 RAIANDARTIRLPI 230
>gi|380302336|ref|ZP_09852029.1| RNA polymerase, sigma 70 subunit, RpoD [Brachybacterium squillarum
M-6-3]
Length = 458
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 94/174 (54%), Gaps = 26/174 (14%)
Query: 226 ERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
E+A +S G T + ++A + V A + +K L K+ GK A LN AQ ++ER+
Sbjct: 129 EKAEDSGGFVFTSSDDDAPAQQVVTAGATADPVKDYL-KQIGKVALLNA-AQEVELAERI 186
Query: 286 LKQHLAFGWYCREELIKSTRP------------------------LVLFLARNYRGLGIP 321
A R+E I T+P LV+ LA+ Y G G+
Sbjct: 187 EAGLYAEQKLKRDESIVRTKPGRELAMIVEDGRAAKDHLLEANLRLVVSLAKRYTGRGML 246
Query: 322 FSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
F DL+Q GN+G+++ E+FD+++GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 247 FLDLIQEGNLGLIRAVEKFDYSKGYKFSTYATWWIRQAITRAMADQARTIRIPV 300
>gi|218441429|ref|YP_002379758.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7424]
gi|218174157|gb|ACK72890.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7424]
Length = 318
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 82/135 (60%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E ++K VQ L+ IK L + + + WA AA ++E L + +A G +E++
Sbjct: 28 EEIVLAKRVQRFMALQDIKDALTQTLKREPQDSEWASAAKITEEELHRAIAAGKAAKEKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
+++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I
Sbjct: 88 VEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAI 147
Query: 361 SKMVARHARGIKIPV 375
++ +A +R I++P+
Sbjct: 148 TRAIAEKSRTIRLPI 162
>gi|209527735|ref|ZP_03276230.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|209491813|gb|EDZ92173.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
Length = 332
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 82/129 (63%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L ++ L KE + W+ AG+SE + + + G ++++I++
Sbjct: 48 KKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMTEIMNRGRRAKQKMIEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 108 LVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 167
Query: 367 HARGIKIPV 375
++R I++P+
Sbjct: 168 NSRTIRLPI 176
>gi|186684216|ref|YP_001867412.1| RNA polymerase sigma factor [Nostoc punctiforme PCC 73102]
gi|186466668|gb|ACC82469.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 327
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 92/170 (54%), Gaps = 14/170 (8%)
Query: 220 PTIFSAERALNSR-------------GRRLTIAR-NEAEMSKGVQVVANLERIKTTLEKE 265
PT+ + LN+R GR + R E K VQ + L K L K+
Sbjct: 2 PTVNTQTENLNTRFTADMVRTYLREIGRVPLLTREQEIVYGKQVQQMMTLIDAKEVLAKK 61
Query: 266 SGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDL 325
+ ++ WA SE ++Q +A G ++++I++ LV+ +A+ Y+ + F DL
Sbjct: 62 LHREPDMSEWADVVQQSETEVQQTVAQGKRAKQKMIEANLRLVVAIAKKYQKRNMEFLDL 121
Query: 326 LQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+ R I++P+
Sbjct: 122 IQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|428225416|ref|YP_007109513.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geitlerinema sp.
PCC 7407]
gi|427985317|gb|AFY66461.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geitlerinema sp.
PCC 7407]
Length = 327
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L + + + + G+ S WA+ +SE L + L
Sbjct: 29 RVPLLTHEQEIIYGKQVQQMMALLQKQEAIAETLGREPSQQEWAEGVQLSEADLAKALKQ 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD +RGYKFSTY
Sbjct: 89 GQRAKQKMIEANLRLVVSIAKKYQKRNLEFLDLIQEGTLGLERGVEKFDPSRGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARTIRLPI 171
>gi|158334481|ref|YP_001515653.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158304722|gb|ABW26339.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ + L+ +K L ++ + +L+ WA A + L++ L
Sbjct: 20 RFPLLNHEQEIIFGKQVQRMIMLQELKQQLHEQLEREPNLSEWADQADIPVSQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GQTANRKMVESNLRLVVSIAKKYNKAKLEFLDLIQEGTIGLQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+++++ +A R I++P+
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPI 162
>gi|87124760|ref|ZP_01080608.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86167639|gb|EAQ68898.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 321
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 82/137 (59%), Gaps = 1/137 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE ++ L ++ G+A A AAG+S LK+ L G +E
Sbjct: 29 QQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGRRAKE 88
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 89 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 148
Query: 359 SISKMVARHARGIKIPV 375
I++ +A +R I++P+
Sbjct: 149 GITRAIAEKSRTIRLPI 165
>gi|111023781|ref|YP_706753.1| RNA polymerase sigma factor [Rhodococcus jostii RHA1]
gi|397737315|ref|ZP_10503987.1| RNA polymerase principal sigma factor hrdB [Rhodococcus sp. JVH1]
gi|110823311|gb|ABG98595.1| sigma factor, sigma 70 type, probable group 1 (principle sigma
factor) [Rhodococcus jostii RHA1]
gi|396926754|gb|EJI93991.1| RNA polymerase principal sigma factor hrdB [Rhodococcus sp. JVH1]
Length = 457
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 27/160 (16%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 146 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELSDSGEKLPA 204
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 205 AQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
D+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 304
>gi|67921267|ref|ZP_00514786.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|416403884|ref|ZP_11687612.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
gi|67857384|gb|EAM52624.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4:Sigma-70
region 1.2 [Crocosphaera watsonii WH 8501]
gi|357261629|gb|EHJ10875.1| Group 2 RNA polymerase sigma factor @ RNA polymerase sigma factor
RpoD [Crocosphaera watsonii WH 0003]
Length = 414
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 68/105 (64%)
Query: 274 CWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
W Q + K+ L G +++++ S LV+ +A+ Y G+ F DL+Q G++G+
Sbjct: 156 TWKQQSKAYLPKFKRRLYLGRRAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGL 215
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 216 IRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 260
>gi|427722651|ref|YP_007069928.1| RpoD subfamily RNA polymerase sigma-70 subunit [Leptolyngbya sp.
PCC 7376]
gi|427354371|gb|AFY37094.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Leptolyngbya sp.
PCC 7376]
Length = 328
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 75/106 (70%)
Query: 270 ASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
++ + WA+A +SE+ L++ +A G + ++I++ LV+ +A+ Y+ + F DL+Q G
Sbjct: 66 STFSEWAEAIKLSEKELRRAVAVGERAKRKMIEANLRLVVAIAKKYQKRNLEFLDLIQEG 125
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
++G+ +G E+FD T+GYKFSTY +WIR++I++ +A+ R I++P+
Sbjct: 126 SLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRAIAQQGRTIRLPI 171
>gi|289570879|ref|ZP_06451106.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
gi|289544633|gb|EFD48281.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis T17]
Length = 528
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 65/99 (65%), Gaps = 6/99 (6%)
Query: 288 QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
H W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD
Sbjct: 277 HHRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 375
>gi|119509984|ref|ZP_01629125.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119512944|ref|ZP_01632006.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119462397|gb|EAW43372.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
gi|119465308|gb|EAW46204.1| group 2 sigma 70-type sigma factor F [Nodularia spumigena CCY9414]
Length = 389
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 82/134 (61%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + ++ LE E G+ + A ++E+ L+ L G + ++I
Sbjct: 97 EVELARRVRFLEEVREVQAALELELGQPTTKVQVAGQLEMTEKQLESRLYQGRVAKRKMI 156
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 157 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 216
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 217 RAIANDARTIRLPI 230
>gi|118469122|ref|YP_887090.1| RNA polymerase sigma factor [Mycobacterium smegmatis str. MC2 155]
gi|399987104|ref|YP_006567453.1| RNA polymerase sigma factor rpoD [Mycobacterium smegmatis str. MC2
155]
gi|555680|gb|AAA85642.1| sigma factor MysA [Mycobacterium smegmatis]
gi|118170409|gb|ABK71305.1| sigma factor MysA [Mycobacterium smegmatis str. MC2 155]
gi|399231665|gb|AFP39158.1| RNA polymerase sigma factor rpoD [Mycobacterium smegmatis str. MC2
155]
Length = 466
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 67/101 (66%), Gaps = 6/101 (5%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 213 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 272
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 273 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 313
>gi|337285410|ref|YP_004624883.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermodesulfatator
indicus DSM 15286]
gi|335358238|gb|AEH43919.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermodesulfatator indicus DSM 15286]
Length = 560
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 61/83 (73%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL+K+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ RGYKFSTY +W
Sbjct: 321 AKDELVKANLRLVVSIAKKYTGRGLQFLDLIQEGNIGLMKAVEKFDYRRGYKFSTYATWW 380
Query: 356 IRKSISKMVARHARGIKIPVPLF 378
IR++I++ +A AR I+IPV +
Sbjct: 381 IRQAITRAIADQARTIRIPVHMI 403
>gi|384100762|ref|ZP_10001819.1| RNA polymerase sigma factor [Rhodococcus imtechensis RKJ300]
gi|383841668|gb|EID80945.1| RNA polymerase sigma factor [Rhodococcus imtechensis RKJ300]
Length = 457
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 27/160 (16%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 146 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELSDSGEKLPA 204
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 205 AQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
D+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 304
>gi|432341278|ref|ZP_19590642.1| RNA polymerase sigma factor [Rhodococcus wratislaviensis IFP 2016]
gi|430773693|gb|ELB89357.1| RNA polymerase sigma factor [Rhodococcus wratislaviensis IFP 2016]
Length = 457
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 27/160 (16%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 146 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELSDSGEKLPA 204
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 205 AQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
D+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 304
>gi|418051032|ref|ZP_12689117.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
gi|353184689|gb|EHB50213.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
rhodesiae JS60]
Length = 509
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 67/101 (66%), Gaps = 6/101 (5%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 256 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 315
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 316 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 356
>gi|404421205|ref|ZP_11002928.1| RNA polymerase sigma factor [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403659218|gb|EJZ13874.1| RNA polymerase sigma factor [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 481
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 65/95 (68%), Gaps = 6/95 (6%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+ W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 234 YQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 293
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
YKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 294 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 328
>gi|157273328|gb|ABV27227.1| sigma 38 RpoS [Candidatus Chloracidobacterium thermophilum]
Length = 549
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 93/161 (57%), Gaps = 17/161 (10%)
Query: 222 IFSAERALNSRGRR--LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAA 279
I +A+ AL + RR + +A A++ + +V+A++E K LE SL +
Sbjct: 243 IENAQEALKDKRRRALIDVAEVRAQIEQAQKVIADIE--KRYLEPARRIKDSLREIFTST 300
Query: 280 GVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNY--RGLGIPFSDLLQAGNVGVLQGA 337
+E+ R E+I++ LV+ +A+NY R G+ FSDL+Q GN+G+++
Sbjct: 301 EEAEK-----------ARREMIEANLRLVVSIAKNYINRSRGLQFSDLIQEGNIGLMRAV 349
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
E+FD+ RGYKFSTY +WIR+++++ +A R I++PV +
Sbjct: 350 EKFDYRRGYKFSTYATWWIRQAVTRAIADQGRTIRVPVHMV 390
>gi|428307386|ref|YP_007144211.1| RpoD subfamily RNA polymerase sigma-70 subunit [Crinalium
epipsammum PCC 9333]
gi|428248921|gb|AFZ14701.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Crinalium
epipsammum PCC 9333]
Length = 327
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI--KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + I K L ++ + + + WA +SE L + +
Sbjct: 29 RVPLLTHEQEIVYGKQVQQMMALIDAKEALAEQQNREPTASEWAAQVHLSEDELTRIITL 88
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY
Sbjct: 89 GQRAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYA 148
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 149 YWWIRQAITRAIAQQARAIRLPI 171
>gi|333991084|ref|YP_004523698.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
gi|333487052|gb|AEF36444.1| RNA polymerase sigma factor SigB [Mycobacterium sp. JDM601]
Length = 512
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 64/95 (67%), Gaps = 6/95 (6%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 265 MAWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 324
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
YKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 325 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 359
>gi|325106737|ref|YP_004267805.1| RNA polymerase sigma-70 subunit RpoD [Planctomyces brasiliensis DSM
5305]
gi|324967005|gb|ADY57783.1| RNA polymerase, sigma 70 subunit, RpoD [Planctomyces brasiliensis
DSM 5305]
Length = 575
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 65/95 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R +K+ F +++L LV+ +A+ YR G+ F DL+Q GN G+++G E++++
Sbjct: 304 REIKRRFGFWTEAKQKLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEYR 363
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
RGYKFSTY +WIR++I++ VA HAR I+IPV +F
Sbjct: 364 RGYKFSTYATWWIRQAITRAVADHARTIRIPVHMF 398
>gi|404393633|ref|ZP_10985559.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium CM2]
gi|404278859|gb|EJZ44345.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium CM2]
Length = 492
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK A LN + +S+R++K Y + +++++ LV+ +A+ Y G G+ F
Sbjct: 228 KEIGKIALLNP-DEEVELSQRMVKGD----EYAKMKIVEANLRLVVSIAKRYVGRGMLFL 282
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 283 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 334
>gi|427703469|ref|YP_007046691.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
gi|427346637|gb|AFY29350.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cyanobium gracile PCC 6307]
Length = 356
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 86/144 (59%), Gaps = 3/144 (2%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLE-KESGKAASLNCWAQAAGVSERVLKQHLA 291
R+ + +E E++ G VQ + LE ++ L+ + G S A AAG+ VL++ L
Sbjct: 57 RVPLLSHEQEITLGRQVQELMALEELREELKMRAGGTDPSQQELAAAAGLRPEVLRKRLH 116
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 117 AGRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTY 176
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 177 AYWWIRQGITRAIAEKSRTIRLPI 200
>gi|363890577|ref|ZP_09317904.1| hypothetical protein HMPREF9628_00551 [Eubacteriaceae bacterium
CM5]
gi|361964953|gb|EHL17953.1| hypothetical protein HMPREF9628_00551 [Eubacteriaceae bacterium
CM5]
Length = 432
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK A LN + +S+R++K Y + +++++ LV+ +A+ Y G G+ F
Sbjct: 168 KEIGKIALLNP-DEEVELSQRMVKGD----EYAKMKIVEANLRLVVSIAKRYVGRGMLFL 222
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 223 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 274
>gi|363893636|ref|ZP_09320731.1| hypothetical protein HMPREF9629_01057 [Eubacteriaceae bacterium
ACC19a]
gi|361963438|gb|EHL16510.1| hypothetical protein HMPREF9629_01057 [Eubacteriaceae bacterium
ACC19a]
Length = 432
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK A LN + +S+R++K Y + +++++ LV+ +A+ Y G G+ F
Sbjct: 168 KEIGKIALLNP-DEEVELSQRMVKGD----EYAKMKIVEANLRLVVSIAKRYVGRGMLFL 222
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 223 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 274
>gi|424852234|ref|ZP_18276631.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
gi|356666899|gb|EHI46970.1| RNA polymerase sigma factor RpoS [Rhodococcus opacus PD630]
Length = 457
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 27/160 (16%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQHLA-------- 291
K ++ A+ + ++ L K+ GK A LN + AG+ + Q L+
Sbjct: 146 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQIMQELSDSGEKLPA 204
Query: 292 -----FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 205 AQRRDMSWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 264
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
D+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 265 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 304
>gi|427731958|ref|YP_007078195.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
gi|427367877|gb|AFY50598.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Nostoc sp. PCC 7524]
Length = 318
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ ++L+ ++ L + + +L WA+AA + L + +A
Sbjct: 20 RVPLLTHEEEIFYGKQVQRSSSLQEVREDLASKLDRQPTLEEWAKAAELDIAELNEAIAD 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEFAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I++P+
Sbjct: 140 YWWIRQAITRAIAEKARTIRLPI 162
>gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae TN]
gi|221229969|ref|YP_002503385.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
gi|699190|gb|AAA62955.1| rpoT [Mycobacterium leprae]
gi|4587111|dbj|BAA76621.1| RpoT [Mycobacterium leprae]
gi|13093042|emb|CAC31403.1| RNA polymerase sigma factor [Mycobacterium leprae]
gi|219933076|emb|CAR71117.1| RNA polymerase sigma factor [Mycobacterium leprae Br4923]
Length = 574
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 27/155 (17%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGV---------SERVLK--- 287
K ++ A+ + ++ L K+ GK A LN + AG+ SER K
Sbjct: 263 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT 321
Query: 288 -QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 322 AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 381
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
D+T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 382 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 416
>gi|407275560|ref|ZP_11104030.1| RNA polymerase sigma factor [Rhodococcus sp. P14]
Length = 452
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 199 VAQRRDLNWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 258
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 259 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 299
>gi|402838551|ref|ZP_10887056.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium OBRC8]
gi|402272765|gb|EJU21981.1| RNA polymerase sigma factor RpoD [Eubacteriaceae bacterium OBRC8]
Length = 492
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK A LN + +S+R++K Y + +++++ LV+ +A+ Y G G+ F
Sbjct: 228 KEIGKIALLNP-DEEVELSQRMVKGD----EYAKMKIVEANLRLVVSIAKRYVGRGMLFL 282
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 283 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 334
>gi|441207686|ref|ZP_20973626.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
gi|440627869|gb|ELQ89674.1| RNA polymerase sigma factor [Mycobacterium smegmatis MKD8]
Length = 454
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 67/101 (66%), Gaps = 6/101 (5%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 201 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 260
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 261 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 301
>gi|320160330|ref|YP_004173554.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
gi|319994183|dbj|BAJ62954.1| RNA polymerase sigma factor [Anaerolinea thermophila UNI-1]
Length = 543
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 58/79 (73%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
LI++ LV+ +A+ Y G G+ F DL+Q GN+G+L+ +FD TRGYKFSTY +WIR+S
Sbjct: 282 LIRANLRLVVSIAKRYLGRGVSFLDLIQEGNLGLLRAVNKFDPTRGYKFSTYATWWIRQS 341
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IPV LF
Sbjct: 342 ISRYIAEQARTIRIPVHLF 360
>gi|434399420|ref|YP_007133424.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
gi|428270517|gb|AFZ36458.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stanieria
cyanosphaera PCC 7437]
Length = 318
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ +E+IK +L+ + G+ + + WA AA ++ L+ +
Sbjct: 20 RVPLLTHEEEILYAKRVQQQIKVEKIKESLQDKLGEEPTESQWADAAEITVEELRNIIQA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPI 162
>gi|374608192|ref|ZP_09680991.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
gi|373553724|gb|EHP80311.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Mycobacterium
tusciae JS617]
Length = 498
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 64/95 (67%), Gaps = 6/95 (6%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 251 MSWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 310
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
YKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 311 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 345
>gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae]
Length = 576
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 27/155 (17%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGV---------SERVLK--- 287
K ++ A+ + ++ L K+ GK A LN + AG+ SER K
Sbjct: 265 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGTKLPT 323
Query: 288 -QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 324 AQRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 383
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
D+T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 384 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 418
>gi|453073906|ref|ZP_21976704.1| RNA polymerase sigma factor [Rhodococcus triatomae BKS 15-14]
gi|452765392|gb|EME23649.1| RNA polymerase sigma factor [Rhodococcus triatomae BKS 15-14]
Length = 454
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 201 VAQRRDLNWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 260
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 261 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 301
>gi|157364824|ref|YP_001471591.1| RpoD family RNA polymerase sigma factor [Thermotoga lettingae TMO]
gi|157315428|gb|ABV34527.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga lettingae
TMO]
Length = 400
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 60/80 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI+S LV+ +A+ Y G G+PF DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 157 AKEKLIESNLRLVVSIAKRYIGRGLPFLDLIQEGNIGLLKAVEKFDWKKGYKFSTYATWW 216
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 217 IRQAITRAIADQARTIRIPV 236
>gi|414079421|ref|YP_007000845.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
gi|413972700|gb|AFW96788.1| RpoD family RNA polymerase sigma factor SigB [Anabaena sp. 90]
Length = 327
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 76/129 (58%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L KE SL+ WA SE L + G ++++I++
Sbjct: 43 KQVQQMMALLEAKEALRKEIDHEPSLSEWAARVNQSETELNHLMVQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPV 375
R I++P+
Sbjct: 163 QGRTIRLPI 171
>gi|239626154|ref|ZP_04669185.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|355682437|ref|ZP_09062447.1| hypothetical protein HMPREF9469_05484 [Clostridium citroniae
WAL-17108]
gi|239520384|gb|EEQ60250.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
gi|354811017|gb|EHE95653.1| hypothetical protein HMPREF9469_05484 [Clostridium citroniae
WAL-17108]
Length = 381
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 61/81 (75%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y +E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +
Sbjct: 144 YAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATW 203
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR+S+++ +A AR I++PV
Sbjct: 204 WIRQSVTRALADQARTIRVPV 224
>gi|423067023|ref|ZP_17055813.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|406711309|gb|EKD06510.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 394
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 91/150 (60%), Gaps = 1/150 (0%)
Query: 229 LNSRGRRLTIARNEAEM-SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L+ GR + R E + K VQ + +L ++ L KE + W+ AG+SE +
Sbjct: 91 LHEIGRVPLLTREEEIIYGKKVQQMMSLLEMRDELTKELDHDPTAAEWSAKAGLSESEMT 150
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ + G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYK
Sbjct: 151 EIMNRGRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYK 210
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPL 377
FSTY +WIR++I++ +A+++R I++P+ +
Sbjct: 211 FSTYAYWWIRQAITRAIAQNSRTIRLPIHI 240
>gi|119511025|ref|ZP_01630145.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
gi|119464276|gb|EAW45193.1| RNA polymerase sigma factor [Nodularia spumigena CCY9414]
Length = 332
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQVVAN--LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + L ++ +L + G+ SL WA AA + L +A
Sbjct: 34 RVPLLTHEEEIQYGKQVQFSRILHEVRDSLINQIGREPSLEEWALAANLEVAELNDAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I++P+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPI 176
>gi|406980685|gb|EKE02255.1| hypothetical protein ACD_20C00407G0008 [uncultured bacterium]
Length = 364
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 62/86 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ AE+FDH RGYKFSTY
Sbjct: 123 GQIAKRKLVQANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLIRAAEKFDHERGYKFSTYA 182
Query: 353 QYWIRKSISKMVARHARGIKIPVPLF 378
+WIR++I++ +A AR I+IPV +
Sbjct: 183 TWWIRQAITRAIADQARTIRIPVHMV 208
>gi|452960731|gb|EME66046.1| RNA polymerase sigma factor [Rhodococcus ruber BKS 20-38]
Length = 451
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 198 VAQRRDLNWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 257
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 258 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 298
>gi|87123242|ref|ZP_01079093.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
gi|86168962|gb|EAQ70218.1| type II alternative RNA polymerase sigma factor, sigma-70 family
protein [Synechococcus sp. RS9917]
Length = 309
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 82/137 (59%), Gaps = 1/137 (0%)
Query: 240 RNEAEMSKGVQVVANLERIKTTL-EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
+ E + + VQ + LE ++ L ++ G+A A AAG+S LK+ L G +E
Sbjct: 17 QQEITLGRQVQELMELEALEAELRDQRGGEAVPAAELATAAGLSALQLKRKLQAGRRAKE 76
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY +WIR+
Sbjct: 77 RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQ 136
Query: 359 SISKMVARHARGIKIPV 375
I++ +A +R I++P+
Sbjct: 137 GITRAIAEKSRTIRLPI 153
>gi|417749579|ref|ZP_12397971.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
gi|336458801|gb|EGO37758.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Mycobacterium avium
subsp. paratuberculosis S397]
Length = 496
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 251 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 310
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 311 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 343
>gi|86608620|ref|YP_477382.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557162|gb|ABD02119.1| RNA polymerase sigma factor [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 319
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLV 308
+++ ++R+ T LE+ S+ W+Q G+ L+Q L G ++ +++ LV
Sbjct: 30 LRLAHQVQRMVTLLEQRQ-PHESVEGWSQRLGIPLAELQQILRQGEAAKKRMVECNLRLV 88
Query: 309 LFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368
+ +A+ YR G+PF DL+Q G +G+ + E+FD TRGYKFSTY +WIR+S+++ +
Sbjct: 89 VSIAKRYRNRGLPFLDLIQEGTIGLTRAVEKFDPTRGYKFSTYATWWIRQSVNRGIQNKG 148
Query: 369 RGIKIPVPLF 378
R I++P ++
Sbjct: 149 RMIRLPAHMY 158
>gi|357021629|ref|ZP_09083860.1| RNA polymerase sigma factor [Mycobacterium thermoresistibile ATCC
19527]
gi|356479377|gb|EHI12514.1| RNA polymerase sigma factor [Mycobacterium thermoresistibile ATCC
19527]
Length = 504
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 259 WICRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 318
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 319 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 351
>gi|336283393|gb|AEI29170.1| sigma70 transcriptional factor [Rhodococcus ruber]
Length = 447
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 194 VAQRRDLNWTCRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 253
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 254 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 294
>gi|118465794|ref|YP_882772.1| RNA polymerase sigma factor [Mycobacterium avium 104]
gi|254776035|ref|ZP_05217551.1| RNA polymerase sigma factor [Mycobacterium avium subsp. avium ATCC
25291]
gi|118167081|gb|ABK67978.1| sigma factor MysA [Mycobacterium avium 104]
Length = 496
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 251 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 310
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 311 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 343
>gi|440778267|ref|ZP_20957033.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis S5]
gi|436721370|gb|ELP45505.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 509
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 264 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 323
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 324 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 356
>gi|443673287|ref|ZP_21138355.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
gi|443414102|emb|CCQ16693.1| RNA polymerase sigma factor [Rhodococcus sp. AW25M09]
Length = 476
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 223 VAQRRDMTWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 282
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 283 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 323
>gi|433627819|ref|YP_007261448.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
gi|432155425|emb|CCK52675.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140060008]
Length = 528
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 375
>gi|400536812|ref|ZP_10800346.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035]
gi|400329825|gb|EJO87324.1| RNA polymerase sigma factor [Mycobacterium colombiense CECT 3035]
Length = 505
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 260 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 319
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 320 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 352
>gi|433631804|ref|YP_007265432.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
gi|432163397|emb|CCK60805.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070010]
Length = 520
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 275 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 334
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A AR I+IPV
Sbjct: 335 FSTYATWWIRQAITRAMADQARTIRIPV 362
>gi|148241197|ref|YP_001226354.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
RCC307]
gi|147849507|emb|CAK27001.1| Alternative RNA polymerase sigma factor, sigma-70 family
[Synechococcus sp. RCC307]
Length = 324
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ + LE + + G S A + G+S VL++ L
Sbjct: 26 RVPLLSHEQEITLGRQVQELVRLEEAEAEFKMRQGHEPSREELASSFGISPAVLRRRLIN 85
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD TRGYKFSTY
Sbjct: 86 GRRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYA 145
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 146 YWWIRQGITRAIAEKSRTIRLPI 168
>gi|375142599|ref|YP_005003248.1| sigma-70 family RNA polymerase sigma factor [Mycobacterium
rhodesiae NBB3]
gi|359823220|gb|AEV76033.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
rhodesiae NBB3]
Length = 528
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 65/99 (65%), Gaps = 6/99 (6%)
Query: 288 QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD
Sbjct: 277 QRRDMSWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 375
>gi|433635765|ref|YP_007269392.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
gi|432167358|emb|CCK64869.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070017]
Length = 528
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 375
>gi|433642889|ref|YP_007288648.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
gi|432159437|emb|CCK56741.1| RNA polymerase sigma factor SigA (Sigma-A) [Mycobacterium canettii
CIPT 140070008]
Length = 528
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A AR I+IPV
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPV 370
>gi|383819214|ref|ZP_09974490.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
gi|383337185|gb|EID15566.1| RNA polymerase sigma factor [Mycobacterium phlei RIVM601174]
Length = 472
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 227 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 286
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 287 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 319
>gi|1072021|gb|AAA81642.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 375
>gi|339444818|ref|YP_004710822.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
gi|338904570|dbj|BAK44421.1| hypothetical protein EGYY_12580 [Eggerthella sp. YY7918]
Length = 419
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 84/133 (63%), Gaps = 6/133 (4%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCW-AQAAGVS-ERVLKQHLA----FGWYCREELIK 302
V ++ E I ++ E+G AA+ A+ G+ ER K+ L G +++LI+
Sbjct: 128 VPLLTAAEEIDLAMKIEAGVAATEELEKAEDEGIELERREKRRLGRIEQVGIDAKQQLIE 187
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 188 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 247
Query: 363 MVARHARGIKIPV 375
+A AR I+IPV
Sbjct: 248 AIADQARTIRIPV 260
>gi|443476204|ref|ZP_21066122.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443018873|gb|ELS33055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 394
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 70/104 (67%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA G+ ++ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G++
Sbjct: 137 WAIKMGMPLGEFRKRLHSGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLI 196
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+ AE+FDH +GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 197 RAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 240
>gi|15609840|ref|NP_217219.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|15842241|ref|NP_337278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CDC1551]
gi|31793875|ref|NP_856368.1| RNA polymerase sigma factor [Mycobacterium bovis AF2122/97]
gi|121638578|ref|YP_978802.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662544|ref|YP_001284067.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148823893|ref|YP_001288647.1| RNA polymerase sigma factor [Mycobacterium tuberculosis F11]
gi|167970074|ref|ZP_02552351.1| RNA polymerase sigma factor RpoD [Mycobacterium tuberculosis H37Ra]
gi|224991070|ref|YP_002645759.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798215|ref|YP_003031216.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 1435]
gi|254551759|ref|ZP_05142206.1| RNA polymerase sigma factor [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289448358|ref|ZP_06438102.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289762874|ref|ZP_06522252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|294994205|ref|ZP_06799896.1| RNA polymerase sigma factor [Mycobacterium tuberculosis 210]
gi|297635311|ref|ZP_06953091.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN 4207]
gi|297732307|ref|ZP_06961425.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN R506]
gi|306780885|ref|ZP_07419222.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|306790106|ref|ZP_07428428.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|306798608|ref|ZP_07436910.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|306804467|ref|ZP_07441135.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|306807495|ref|ZP_07444163.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|306968762|ref|ZP_07481423.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|307080806|ref|ZP_07489976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|313659640|ref|ZP_07816520.1| RNA polymerase sigma factor [Mycobacterium tuberculosis KZN V2475]
gi|340627704|ref|YP_004746156.1| RNA polymerase sigma factor SIGA [Mycobacterium canettii CIPT
140010059]
gi|375295482|ref|YP_005099749.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|378772433|ref|YP_005172166.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|383308467|ref|YP_005361278.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|385991988|ref|YP_005910286.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|385995609|ref|YP_005913907.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|385999483|ref|YP_005917782.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|392387335|ref|YP_005308964.1| sigA [Mycobacterium tuberculosis UT205]
gi|392431690|ref|YP_006472734.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|397674612|ref|YP_006516147.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|424805043|ref|ZP_18230474.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|424948361|ref|ZP_18364057.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|449064770|ref|YP_007431853.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
gi|61234251|sp|P0A602.1|RPOD_MYCTU RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|61234258|sp|P0A603.1|RPOD_MYCBO RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|1072023|gb|AAA81643.1| sigma factor [Mycobacterium bovis]
gi|1072025|gb|AAA81644.1| sigma factor [Mycobacterium tuberculosis str. Erdman = ATCC 35801]
gi|1171102|gb|AAA86043.1| sigma factor MysA [Mycobacterium tuberculosis H37Rv]
gi|13882532|gb|AAK47092.1| RNA polymerase principal sigma factor SigA [Mycobacterium
tuberculosis CDC1551]
gi|31619469|emb|CAD94907.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium bovis
AF2122/97]
gi|121494226|emb|CAL72704.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506696|gb|ABQ74505.1| RNA polymerase sigma factor [Mycobacterium tuberculosis H37Ra]
gi|148722420|gb|ABR07045.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis F11]
gi|224774185|dbj|BAH26991.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319718|gb|ACT24321.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
1435]
gi|289421316|gb|EFD18517.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CPHL_A]
gi|289710380|gb|EFD74396.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis GM
1503]
gi|308326286|gb|EFP15137.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu002]
gi|308333457|gb|EFP22308.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu004]
gi|308341125|gb|EFP29976.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu006]
gi|308346090|gb|EFP34941.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu007]
gi|308348951|gb|EFP37802.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu008]
gi|308353649|gb|EFP42500.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu009]
gi|308361450|gb|EFP50301.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu011]
gi|326904319|gb|EGE51252.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis W-148]
gi|328457987|gb|AEB03410.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
4207]
gi|339295563|gb|AEJ47674.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5079]
gi|339299181|gb|AEJ51291.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CCDC5180]
gi|340005894|emb|CCC45060.1| RNA polymerase sigma factor SIGA (sigma-A) [Mycobacterium canettii
CIPT 140010059]
gi|341602616|emb|CCC65292.1| RNA polymerase sigma factor sigA [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|344220530|gb|AEN01161.1| RNA polymerase sigma factor [Mycobacterium tuberculosis CTRI-2]
gi|356594754|gb|AET19983.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Mexico]
gi|358232876|dbj|GAA46368.1| RNA polymerase sigma factor [Mycobacterium tuberculosis NCGM2209]
gi|378545886|emb|CCE38164.1| sigA [Mycobacterium tuberculosis UT205]
gi|380722420|gb|AFE17529.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB327]
gi|392053099|gb|AFM48657.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis KZN
605]
gi|395139517|gb|AFN50676.1| RNA polymerase sigma factor rpoD [Mycobacterium tuberculosis H37Rv]
gi|440582180|emb|CCG12583.1| RNA POLYMERASE SIGMA FACTOR SIGA (SIGMA-A) [Mycobacterium
tuberculosis 7199-99]
gi|444896240|emb|CCP45501.1| RNA polymerase sigma factor SigA (sigma-A) [Mycobacterium
tuberculosis H37Rv]
gi|449033278|gb|AGE68705.1| RNA polymerase sigma factor [Mycobacterium bovis BCG str. Korea
1168P]
Length = 528
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 375
>gi|113474981|ref|YP_721042.1| RNA polymerase subunit sigma 28 [Trichodesmium erythraeum IMS101]
gi|110166029|gb|ABG50569.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 496
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 84/137 (61%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E ++ + + LE+I LE++ ++ + WA A +S+ L L G + +++
Sbjct: 207 EIHLAHQIDGLLALEKIYEKLEEKLNRSPNEIEWATEAKMSKWELCDRLEQGRRAKNQMV 266
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+ LV +A+ Y+ G+ F DL+Q G +G+L+ E+FDHT+GYKFSTY +WIR++I+
Sbjct: 267 TANLRLVTSVAKRYQNRGLDFQDLIQEGVIGLLRATEKFDHTKGYKFSTYGIWWIRQAIT 326
Query: 362 KMVARHARGIKIPVPLF 378
+ + ++R +++PV L+
Sbjct: 327 RAICDYSRIVRLPVYLY 343
>gi|41408918|ref|NP_961754.1| RNA polymerase sigma factor [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41397277|gb|AAS05137.1| SigA [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 509
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 264 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 323
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 324 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 356
>gi|154498377|ref|ZP_02036755.1| hypothetical protein BACCAP_02366 [Bacteroides capillosus ATCC
29799]
gi|150272688|gb|EDM99866.1| RNA polymerase sigma factor RpoD [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 441
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 66/93 (70%)
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
E+ LK+ + G ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+
Sbjct: 191 EKALKKDIRRGEAAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDY 250
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 251 TKGYKFSTYATWWIRQAITRAIADQARTIRIPV 283
>gi|254821650|ref|ZP_05226651.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379748146|ref|YP_005338967.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|379755437|ref|YP_005344109.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|379762983|ref|YP_005349380.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|406031675|ref|YP_006730566.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
gi|378800510|gb|AFC44646.1| RNA polymerase sigma factor [Mycobacterium intracellulare ATCC
13950]
gi|378805653|gb|AFC49788.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-02]
gi|378810925|gb|AFC55059.1| RNA polymerase sigma factor [Mycobacterium intracellulare MOTT-64]
gi|405130222|gb|AFS15477.1| RNA polymerase sigma factor rpoD [Mycobacterium indicus pranii MTCC
9506]
Length = 488
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 65/99 (65%), Gaps = 6/99 (6%)
Query: 288 QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD
Sbjct: 237 QRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 296
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 297 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 335
>gi|308371101|ref|ZP_07423832.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308379284|ref|ZP_07485758.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308405944|ref|ZP_07494511.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|422813752|ref|ZP_16862124.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|308329814|gb|EFP18665.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu003]
gi|308357496|gb|EFP46347.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu010]
gi|308365045|gb|EFP53896.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu012]
gi|323718698|gb|EGB27860.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
CDC1551A]
gi|379029013|dbj|BAL66746.1| RNA polymerase sigma factor [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
Length = 530
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 285 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 344
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 345 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 377
>gi|254413477|ref|ZP_05027247.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
gi|196179584|gb|EDX74578.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coleofasciculus chthonoplastes PCC 7420]
Length = 331
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 88/143 (61%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + LE+ K +L ++ G +L WA+A+ +SE L+ +
Sbjct: 32 RVPLLTHEQEILYGKQVQRLNALEQTKESLFEQLGYEPTLCEWAKASSLSEAELQSCIRA 91
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 92 GQTAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 151
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 152 YWWIRQAITRAIAEKGRTIRLPI 174
>gi|387876811|ref|YP_006307115.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|443306603|ref|ZP_21036391.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
gi|386790269|gb|AFJ36388.1| RNA polymerase sigma factor [Mycobacterium sp. MOTT36Y]
gi|442768167|gb|ELR86161.1| RNA polymerase sigma factor [Mycobacterium sp. H4Y]
Length = 501
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 256 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 315
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 316 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 348
>gi|339632715|ref|YP_004724357.1| RNA polymerase sigma factor SigA [Mycobacterium africanum GM041182]
gi|339332071|emb|CCC27777.1| RNA polymerase sigma factor SIGA (SIGMA-A) [Mycobacterium africanum
GM041182]
Length = 528
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGGRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 375
>gi|224000633|ref|XP_002289989.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
gi|220975197|gb|EED93526.1| plastid RNA polymerase sigma factor [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 83/140 (59%), Gaps = 2/140 (1%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A+ E + V+ + E + L E G++ S+ WA A S R+ ++ +
Sbjct: 4 LLTAKEEYSLGMKVKFMVKCEAVHEGLSVEMGRSPSIAEWA--AACSPRLFREMMLTAKE 61
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ +++ LV+ +AR Y G+G+ DL+Q G++G+ + AE+FD +G+KFSTY +W
Sbjct: 62 AKQRMVQCNMRLVVSIARRYHGVGVNVQDLVQEGSLGLARAAEKFDPKKGFKFSTYASWW 121
Query: 356 IRKSISKMVARHARGIKIPV 375
I++++ + +A H+R I++PV
Sbjct: 122 IQQAVFRSIAYHSRTIRLPV 141
>gi|120403451|ref|YP_953280.1| RNA polymerase sigma factor [Mycobacterium vanbaalenii PYR-1]
gi|119956269|gb|ABM13274.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium
vanbaalenii PYR-1]
Length = 478
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 233 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 292
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 293 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 325
>gi|1072017|gb|AAA81640.1| sigma factor [Mycobacterium bovis]
gi|1072019|gb|AAA81641.1| sigma factor [Mycobacterium bovis]
Length = 528
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A AR I+IPV
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPV 370
>gi|308232215|ref|ZP_07415319.2| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308373480|ref|ZP_07667590.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
gi|308214639|gb|EFO74038.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu001]
gi|308337452|gb|EFP26303.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis
SUMu005]
Length = 413
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 168 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 227
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 228 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 260
>gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians D188]
Length = 474
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
+ Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 221 VAQRRDMTWICRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 280
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 281 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 321
>gi|434395228|ref|YP_007130175.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
gi|428267069|gb|AFZ33015.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Gloeocapsa sp.
PCC 7428]
Length = 328
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 80/129 (62%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + ++ K L K+ + ++ WA +SE L + G ++++I++
Sbjct: 44 KQVQQMMSVLDAKEALAKKLHREPTVQEWASHVKMSEADLHDTVRRGQRAKQKMIEANLR 103
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 104 LVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 163
Query: 367 HARGIKIPV 375
AR I++P+
Sbjct: 164 QARTIRLPI 172
>gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|383322090|ref|YP_005382943.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383325259|ref|YP_005386112.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383491143|ref|YP_005408819.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384436410|ref|YP_005651134.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451814507|ref|YP_007450959.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|1652838|dbj|BAA17757.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339273442|dbj|BAK49929.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359271409|dbj|BAL28928.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359274579|dbj|BAL32097.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359277749|dbj|BAL35266.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|407958268|dbj|BAM51508.1| RNA polymerase sigma factor [Bacillus subtilis BEST7613]
gi|451780476|gb|AGF51445.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 369
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 85/140 (60%), Gaps = 5/140 (3%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCR- 297
A E E+++ ++++ + E ++ L ++ + SL W QA + ++Q + + R
Sbjct: 74 AAEEVELARQIRLLVSAEDVRQQLTQQLERTPSLQEWGQALEFPQ--VRQFEIWLYQLRA 131
Query: 298 --EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+I+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +W
Sbjct: 132 AKRRMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAIGLNRAAEKFDPDKGYKFSTYAYWW 191
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I++P+
Sbjct: 192 IRQAITRTIANDARTIRLPI 211
>gi|257784627|ref|YP_003179844.1| RpoD subfamily RNA polymerase sigma-70 subunit [Atopobium parvulum
DSM 20469]
gi|257473134|gb|ACV51253.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Atopobium
parvulum DSM 20469]
Length = 455
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 81/133 (60%), Gaps = 6/133 (4%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE------RVLKQHLAFGWYCREELIK 302
V ++ E + ++ E+G AAS G+ E R L + + G +++LI
Sbjct: 164 VDLLTASEEVHLAMKIEAGTAASQKLEDFEDGLIELNRAEQRRLMRIESVGLDAKQQLIS 223
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 224 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 283
Query: 363 MVARHARGIKIPV 375
+A AR I+IPV
Sbjct: 284 AIADQARTIRIPV 296
>gi|392416014|ref|YP_006452619.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
gi|390615790|gb|AFM16940.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
chubuense NBB4]
Length = 496
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 251 WICRDGDKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 310
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 311 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 343
>gi|108799152|ref|YP_639349.1| RNA polymerase sigma factor [Mycobacterium sp. MCS]
gi|119868267|ref|YP_938219.1| RNA polymerase sigma factor [Mycobacterium sp. KMS]
gi|108769571|gb|ABG08293.1| RNA polymerase, sigma 28 subunit [Mycobacterium sp. MCS]
gi|119694356|gb|ABL91429.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
KMS]
Length = 480
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 65/96 (67%), Gaps = 6/96 (6%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 227 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 286
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
FD+T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 287 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 322
>gi|296171852|ref|ZP_06852951.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295893936|gb|EFG73705.1| RNA polymerase sigma factor rpoD [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 503
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 258 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 317
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A AR I+IPV
Sbjct: 318 FSTYATWWIRQAITRAMADQARTIRIPV 345
>gi|126434760|ref|YP_001070451.1| RNA polymerase sigma factor [Mycobacterium sp. JLS]
gi|126234560|gb|ABN97960.1| RNA polymerase, sigma 70 subunit, RpoD family [Mycobacterium sp.
JLS]
Length = 480
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 65/96 (67%), Gaps = 6/96 (6%)
Query: 286 LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
++Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 227 VQQRRDMQWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 286
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
FD+T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 287 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 322
>gi|209525810|ref|ZP_03274346.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|423064796|ref|ZP_17053586.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
gi|209493783|gb|EDZ94102.1| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima
CS-328]
gi|406714039|gb|EKD09207.1| RNA polymerase sigma 70 subunit RpoD family [Arthrospira platensis
C1]
Length = 407
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 23/158 (14%)
Query: 241 NEAEMSKGV-QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYC--- 296
EAE GV Q NL +++ L + SL WA A GV+ LKQ +A G C
Sbjct: 90 TEAETKGGVLQTYVNLLKVRDRLCAKLSHRPSLERWAAAGGVNVAQLKQIMAEGKRCWAE 149
Query: 297 -------------------REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGA 337
++ +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ +
Sbjct: 150 LANLSVEELKQVQREGLQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAV 209
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
E+FD TRGY+FSTY +WIR+ I++ +A +R I++PV
Sbjct: 210 EKFDPTRGYRFSTYSYWWIRQGITRAIATQSRTIRLPV 247
>gi|414077761|ref|YP_006997079.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
gi|413971177|gb|AFW95266.1| RpoD family RNA polymerase sigma subunit SigD [Anabaena sp. 90]
Length = 318
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L I+ L + G ++ WA A+ + L Q +A
Sbjct: 20 RVPLLTHEEEIFYGKQVQRSTALHEIREGLAAQLGHEPTVEEWAAASDIEVSELNQAIAV 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I++P+
Sbjct: 140 YWWIRQAITRAIAEKARTIRLPI 162
>gi|359459297|ref|ZP_09247860.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ + L+ +K L+ + + WA+ A VS L++ L
Sbjct: 20 RFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQQEWAEKAQVSVAQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+++++ +A R I++P+
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPI 162
>gi|409993030|ref|ZP_11276188.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
gi|409936091|gb|EKN77597.1| RNA polymerase sigma factor SigC [Arthrospira platensis str.
Paraca]
Length = 409
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 23/158 (14%)
Query: 241 NEAEMSKGV-QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYC--- 296
EAE + GV Q NL +++ L + SL WA A GV+ LKQ +A G C
Sbjct: 92 TEAETNGGVLQTYVNLLKVRDRLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAE 151
Query: 297 -------------------REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGA 337
++ +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ +
Sbjct: 152 LANLSVEELKQVQREGIQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAV 211
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
E+FD TRGY+FSTY +WIR+ I++ +A +R I++PV
Sbjct: 212 EKFDPTRGYRFSTYSYWWIRQGITRAIATQSRTIRLPV 249
>gi|404447267|ref|ZP_11012342.1| RNA polymerase sigma factor [Mycobacterium vaccae ATCC 25954]
gi|403649131|gb|EJZ04562.1| RNA polymerase sigma factor [Mycobacterium vaccae ATCC 25954]
Length = 459
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 63/91 (69%), Gaps = 6/91 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 214 WVCRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 273
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A AR I+IPV +
Sbjct: 274 FSTYATWWIRQAITRAMADQARTIRIPVHMV 304
>gi|388501386|gb|AFK38759.1| unknown [Lotus japonicus]
Length = 311
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 84/141 (59%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + LE +K L+ + G+ ++ WA G+S L+ L G
Sbjct: 9 KKLLTFEEESQLISQIQNLFRLEEVKIRLQSQFGREPTMAEWADGVGLSCYALQTQLRSG 68
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
+E+LI + +V+ +A+NY G G+ F DLLQ G++G+++ E+F G +F++Y
Sbjct: 69 TRSKEKLIHANLRMVVHVAKNYLGRGLSFQDLLQEGSMGLMKSVEKFKPQAGCRFASYAY 128
Query: 354 YWIRKSISKMVARHARGIKIP 374
+WIR++I + + H+R I++P
Sbjct: 129 WWIRQTIRRALFLHSRTIRLP 149
>gi|359419328|ref|ZP_09211286.1| RNA polymerase sigma factor SigA [Gordonia araii NBRC 100433]
gi|358244735|dbj|GAB09355.1| RNA polymerase sigma factor SigA [Gordonia araii NBRC 100433]
Length = 508
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 66/97 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R L++ G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 259 RALREVAYDGTKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 318
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 319 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 355
>gi|183982025|ref|YP_001850316.1| RNA polymerase sigma factor [Mycobacterium marinum M]
gi|183175351|gb|ACC40461.1| RNA polymerase sigma factor SigA [Mycobacterium marinum M]
Length = 501
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 256 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 315
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 316 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 348
>gi|158336372|ref|YP_001517546.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158306613|gb|ABW28230.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ + L+ +K L+ + + WA+ A VS L++ L
Sbjct: 20 RFPLLNHEQEVIFGKQVQRLTALQEMKQELQDHLDREPTQKEWAEKAQVSVAQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+++++ +A R I++P+
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPI 162
>gi|443490424|ref|YP_007368571.1| RNA polymerase sigma factor SigA [Mycobacterium liflandii 128FXT]
gi|442582921|gb|AGC62064.1| RNA polymerase sigma factor SigA [Mycobacterium liflandii 128FXT]
Length = 509
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 264 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 323
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 324 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 356
>gi|295098975|emb|CBK88064.1| RNA polymerase, sigma 70 subunit, RpoD [Eubacterium cylindroides
T2-87]
Length = 368
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 70/112 (62%), Gaps = 1/112 (0%)
Query: 265 ESGKAASLNCWAQAAGVSERV-LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ G+AA + ER L +A G ++ LI S LV+ +A+ Y G G+ F
Sbjct: 97 QDGEAAKKKLEEPDLDIEERKKLASVVADGEEAKQVLISSNLRLVVSIAKKYVGRGMLFL 156
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q GN G+++ E+FD+T+G+KFSTY +WIR+SI++ +A AR I+IPV
Sbjct: 157 DLIQEGNCGLIKAVEKFDYTKGFKFSTYATWWIRQSITRAIADQARTIRIPV 208
>gi|365870934|ref|ZP_09410475.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|414583598|ref|ZP_11440738.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|420880896|ref|ZP_15344263.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|420885019|ref|ZP_15348379.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|420890160|ref|ZP_15353508.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|420895746|ref|ZP_15359085.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|420899547|ref|ZP_15362879.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|420906223|ref|ZP_15369541.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|420972712|ref|ZP_15435905.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|421050011|ref|ZP_15513005.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|363994737|gb|EHM15955.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|392080782|gb|EIU06608.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0421]
gi|392085805|gb|EIU11630.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0304]
gi|392087908|gb|EIU13730.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0422]
gi|392095058|gb|EIU20853.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0708]
gi|392100894|gb|EIU26685.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0817]
gi|392104127|gb|EIU29913.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1212]
gi|392118750|gb|EIU44518.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-1215]
gi|392165604|gb|EIU91290.1| RNA polymerase sigma factor [Mycobacterium abscessus 5S-0921]
gi|392238614|gb|EIV64107.1| RNA polymerase sigma factor [Mycobacterium massiliense CCUG 48898]
Length = 467
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 222 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 281
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A AR I+IPV
Sbjct: 282 FSTYATWWIRQAITRAMADQARTIRIPV 309
>gi|169630092|ref|YP_001703741.1| RNA polymerase sigma factor [Mycobacterium abscessus ATCC 19977]
gi|418247851|ref|ZP_12874237.1| RNA polymerase sigma factor [Mycobacterium abscessus 47J26]
gi|418421111|ref|ZP_12994287.1| RNA polymerase sigma factor [Mycobacterium abscessus subsp.
bolletii BD]
gi|419709752|ref|ZP_14237220.1| RNA polymerase sigma factor [Mycobacterium abscessus M93]
gi|419716769|ref|ZP_14244164.1| RNA polymerase sigma factor [Mycobacterium abscessus M94]
gi|420864405|ref|ZP_15327795.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|420869196|ref|ZP_15332578.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|420873640|ref|ZP_15337017.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|420910618|ref|ZP_15373930.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|420917070|ref|ZP_15380374.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|420922235|ref|ZP_15385532.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|420927897|ref|ZP_15391179.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|420932113|ref|ZP_15395388.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|420937966|ref|ZP_15401235.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|420942371|ref|ZP_15405628.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|420947419|ref|ZP_15410669.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|420952630|ref|ZP_15415874.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|420956799|ref|ZP_15420036.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
gi|420961817|ref|ZP_15425042.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|420967506|ref|ZP_15430710.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|420978237|ref|ZP_15441415.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|420983622|ref|ZP_15446789.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|420988844|ref|ZP_15452000.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|420992758|ref|ZP_15455905.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|420998610|ref|ZP_15461747.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|421003047|ref|ZP_15466171.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|421008103|ref|ZP_15471214.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|421013590|ref|ZP_15476671.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|421018540|ref|ZP_15481598.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|421024704|ref|ZP_15487748.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|421029833|ref|ZP_15492865.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|421035203|ref|ZP_15498223.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|421039567|ref|ZP_15502576.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|421043995|ref|ZP_15506996.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|169242059|emb|CAM63087.1| Probable RNA polymerase sigma factor RpoD (Sigma-A) [Mycobacterium
abscessus]
gi|353452344|gb|EHC00738.1| RNA polymerase sigma factor [Mycobacterium abscessus 47J26]
gi|363997578|gb|EHM18789.1| RNA polymerase sigma factor [Mycobacterium abscessus subsp.
bolletii BD]
gi|382940330|gb|EIC64654.1| RNA polymerase sigma factor [Mycobacterium abscessus M94]
gi|382943633|gb|EIC67947.1| RNA polymerase sigma factor [Mycobacterium abscessus M93]
gi|392068666|gb|EIT94513.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RA]
gi|392071380|gb|EIT97226.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0303]
gi|392072668|gb|EIT98509.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0726-RB]
gi|392112612|gb|EIU38381.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-R]
gi|392121210|gb|EIU46976.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0125-S]
gi|392132071|gb|EIU57817.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-S]
gi|392135130|gb|EIU60871.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-1108]
gi|392136872|gb|EIU62609.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-151-0930]
gi|392143481|gb|EIU69206.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-152-0914]
gi|392149798|gb|EIU75512.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-153-0915]
gi|392154449|gb|EIU80155.1| RNA polymerase sigma factor [Mycobacterium massiliense 1S-154-0310]
gi|392157942|gb|EIU83639.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0626]
gi|392166511|gb|EIU92196.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0212]
gi|392168618|gb|EIU94296.1| RNA polymerase sigma factor [Mycobacterium abscessus 6G-0728-R]
gi|392183123|gb|EIV08774.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0206]
gi|392185542|gb|EIV11191.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0307]
gi|392186422|gb|EIV12069.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-R]
gi|392194505|gb|EIV20125.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0912-S]
gi|392199556|gb|EIV25166.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0119-R]
gi|392201938|gb|EIV27536.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-R]
gi|392208415|gb|EIV33989.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0122-S]
gi|392211501|gb|EIV37067.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0731]
gi|392224585|gb|EIV50105.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-R]
gi|392224659|gb|EIV50178.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-R]
gi|392225935|gb|EIV51450.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0930-S]
gi|392237847|gb|EIV63341.1| RNA polymerase sigma factor [Mycobacterium abscessus 4S-0116-S]
gi|392249282|gb|EIV74757.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-1231]
gi|392250013|gb|EIV75487.1| RNA polymerase sigma factor [Mycobacterium abscessus 3A-0810-R]
gi|392253698|gb|EIV79166.1| RNA polymerase sigma factor [Mycobacterium massiliense 2B-0107]
Length = 467
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 222 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 281
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A AR I+IPV
Sbjct: 282 FSTYATWWIRQAITRAMADQARTIRIPV 309
>gi|172035791|ref|YP_001802292.1| RNA polymerase sigma factor RpoD [Cyanothece sp. ATCC 51142]
gi|354555027|ref|ZP_08974330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
gi|171697245|gb|ACB50226.1| group 1 sigma-70 RNA polymerase sigma factor A [Cyanothece sp. ATCC
51142]
gi|353553181|gb|EHC22574.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
ATCC 51472]
Length = 416
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 65/93 (69%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
K+ L G +++++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +G
Sbjct: 170 FKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKG 229
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
YKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 230 YKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 262
>gi|323450165|gb|EGB06048.1| hypothetical protein AURANDRAFT_11909, partial [Aureococcus
anophagefferens]
Length = 325
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSER-VLKQHLAFGWYCREEL 300
E ++ VQ + L ++ L+ G+ S WA A G + L+ + CREEL
Sbjct: 23 EVALATEVQALVALRAKRSELKAALGREPSGGEWANATGYANYGALRTRMGHMKACREEL 82
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I+ LVL +A+ Y G+ F+DL Q GN G+ + +RFD ++G++FSTY +WIR+++
Sbjct: 83 IQRNLRLVLSVAKRYGDCGLAFTDLCQEGNFGLAKACDRFDPSKGFRFSTYAVWWIRQAV 142
Query: 361 SKMVARHARGIKIPV 375
+ VA +R I++P
Sbjct: 143 AHAVAHQSRTIRLPT 157
>gi|397679869|ref|YP_006521404.1| RNA polymerase sigma factor rpoD [Mycobacterium massiliense str. GO
06]
gi|395458134|gb|AFN63797.1| RNA polymerase sigma factor rpoD [Mycobacterium massiliense str. GO
06]
Length = 380
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 135 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 194
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A AR I+IPV
Sbjct: 195 FSTYATWWIRQAITRAMADQARTIRIPV 222
>gi|427714236|ref|YP_007062860.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
gi|427378365|gb|AFY62317.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 6312]
Length = 325
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAE--MSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E + K VQ + L ++ TL E G+ +L A A + L L
Sbjct: 27 RVPLLTHEQEIILGKQVQQLMRLRDLEETLTTELGREPTLAELATVAEMPPEKLNLALRK 86
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + DL+Q G +G+ +G E+FD TRGYKFSTY
Sbjct: 87 GQRAKQKMIEANLRLVVSVAKKYQKRNLELLDLIQEGTLGLERGVEKFDPTRGYKFSTYA 146
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A+ AR I++P+
Sbjct: 147 YWWIRQAITRAIAQQARTIRLPI 169
>gi|427738916|ref|YP_007058460.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427373957|gb|AFY57913.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 378
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 82/134 (61%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+++ + + + +++ G A+ G+ ++ L+ L G + ++I
Sbjct: 86 EVELARRVRILEEVRQAQAAAQEKLGYFPDKAAIAKEMGIVQKQLEHRLYQGKVAKRKMI 145
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 146 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 205
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 206 RAIANDARTIRLPI 219
>gi|373455986|ref|ZP_09547801.1| RNA polymerase sigma factor RpoD [Dialister succinatiphilus YIT
11850]
gi|371934329|gb|EHO62123.1| RNA polymerase sigma factor RpoD [Dialister succinatiphilus YIT
11850]
Length = 400
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 61/82 (74%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E+ + LV+ +A+ Y G G+PF DL+Q GN+G+L+ ++FD+T+GYKFSTY +W
Sbjct: 167 AKKEMANANLRLVVSIAKKYPGRGMPFLDLIQEGNIGLLKAVDKFDYTKGYKFSTYATWW 226
Query: 356 IRKSISKMVARHARGIKIPVPL 377
IR++I++ +A AR I++PV +
Sbjct: 227 IRQAITRSIADQARTIRVPVHM 248
>gi|284928680|ref|YP_003421202.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
gi|284809139|gb|ADB94844.1| hypothetical protein UCYN_00890 [cyanobacterium UCYN-A]
Length = 420
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 65/93 (69%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
K+ L G +++++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +G
Sbjct: 174 FKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKG 233
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
YKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 234 YKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 266
>gi|118618666|ref|YP_906998.1| RNA polymerase sigma factor [Mycobacterium ulcerans Agy99]
gi|118570776|gb|ABL05527.1| RNA polymerase sigma factor SigA [Mycobacterium ulcerans Agy99]
Length = 501
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 256 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 315
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 316 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 348
>gi|433647336|ref|YP_007292338.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
gi|433297113|gb|AGB22933.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium
smegmatis JS623]
Length = 518
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 273 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 332
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A AR I+IPV
Sbjct: 333 FSTYATWWIRQAITRAMADQARTIRIPV 360
>gi|386005579|ref|YP_005923858.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
gi|380726067|gb|AFE13862.1| RNA polymerase sigma factor [Mycobacterium tuberculosis RGTB423]
Length = 324
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 63/91 (69%), Gaps = 6/91 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYK
Sbjct: 79 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYK 138
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FSTY +WIR++I++ +A AR I+IPV +
Sbjct: 139 FSTYATWWIRQAITRAMADQARTIRIPVHMV 169
>gi|126659035|ref|ZP_01730176.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
gi|126619692|gb|EAZ90420.1| RNA polymerase sigma factor RpoD [Cyanothece sp. CCY0110]
Length = 416
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 65/93 (69%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
K+ L G +++++ S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +G
Sbjct: 170 FKRRLYLGRKAKDKMVHSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKG 229
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
YKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 230 YKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 262
>gi|359458359|ref|ZP_09246922.1| RNA polymerase sigma-70 factor [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ L+ +K L+ + + +L WA A +S L++ L
Sbjct: 20 RFPLLNHEEEIIFGKQVQRFIALQDLKQDLQADLDREPTLTEWADKAELSISQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+++++ +A R I++P+
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPI 162
>gi|108803849|ref|YP_643786.1| RNA polymerase sigma-28 subunit [Rubrobacter xylanophilus DSM 9941]
gi|108765092|gb|ABG03974.1| RNA polymerase, sigma 28 subunit [Rubrobacter xylanophilus DSM
9941]
Length = 289
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 58/80 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R++LI+ LV+ +A+ YRG G+PF DL+Q GN+G+++ E+FD RG++FSTY +W
Sbjct: 51 ARQKLIEKNLRLVVSVAKKYRGYGLPFEDLIQEGNIGLMKAVEKFDPERGFRFSTYATWW 110
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+++ + VA R I++PV
Sbjct: 111 IRQAVQRAVADKGRTIRVPV 130
>gi|407327701|dbj|BAM45408.1| sigma factor 1 [Marchantia polymorpha]
Length = 574
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
RLT A E +SK ++ L+ + E+ G + + WA ++ L L
Sbjct: 267 RLT-AEEEIMLSKKIRTGYILKEERKKFERALGHPITKDQWAGHMHMAVGDLDAQLHEAE 325
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
R+ ++ + LV+ + + Y G+ DL+Q G++G+L+G E+FDHTRGYK STYV +
Sbjct: 326 LARDRMVMANLRLVVSVVKQYNCEGLEVPDLIQEGSIGLLKGVEKFDHTRGYKLSTYVHW 385
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR+ +++ +A H+R +++PV
Sbjct: 386 WIRQGVTRAIADHSRTVRLPV 406
>gi|338731696|ref|YP_004661088.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermotoga
thermarum DSM 5069]
gi|335366047|gb|AEH51992.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
thermarum DSM 5069]
Length = 394
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 60/80 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++LI+S LV+ +A+ Y G G+PF DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 150 AKKKLIQSNLRLVVSIAKKYMGRGLPFLDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 209
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I++PV
Sbjct: 210 IRQAITRAIADQARTIRVPV 229
>gi|108804071|ref|YP_644008.1| RNA polymerase sigma-28 subunit [Rubrobacter xylanophilus DSM 9941]
gi|108765314|gb|ABG04196.1| RNA polymerase, sigma 28 subunit [Rubrobacter xylanophilus DSM
9941]
Length = 294
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 58/80 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R++LI+ LV+ +A+ YRG G+PF DL+Q GN+G+++ E+FD RG++FSTY +W
Sbjct: 56 ARQKLIEKNLRLVVSVAKKYRGYGLPFEDLIQEGNIGLMKAVEKFDPERGFRFSTYATWW 115
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+++ + VA R I++PV
Sbjct: 116 IRQAVQRAVADKGRTIRVPV 135
>gi|282896368|ref|ZP_06304389.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
gi|281198656|gb|EFA73536.1| sigD (sigma 28 (flagella/spoulation)) [Raphidiopsis brookii D9]
Length = 332
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 79/129 (61%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ L K L +E + SL WA+AA + + L + LA G + +++++
Sbjct: 48 KQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLAQGEIAKRKMVEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
L++ +A+ Y + DL+Q G++G+ +G E+FD ++GY+FSTY +WIR++I++ +A
Sbjct: 108 LLVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAE 167
Query: 367 HARGIKIPV 375
AR I++P+
Sbjct: 168 KARTIRLPI 176
>gi|379709850|ref|YP_005265055.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
gi|374847349|emb|CCF64419.1| RNA polymerase sigma factor [Nocardia cyriacigeorgica GUH-2]
Length = 454
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 64/95 (67%), Gaps = 6/95 (6%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
F W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 207 FNWIIRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 266
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
YKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 267 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 301
>gi|434406935|ref|YP_007149820.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
gi|428261190|gb|AFZ27140.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Cylindrospermum stagnale PCC 7417]
Length = 349
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L ++ L + G+ +L WA A + L + +A
Sbjct: 51 RVPLLTHEEEIFYGKQVQRATALHEVREFLATQLGRQPNLEEWAAATKLETTALNEAIAD 110
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 111 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 170
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I++P+
Sbjct: 171 YWWIRQAITRAIAEKARTIRLPI 193
>gi|387827609|ref|YP_005806891.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
N40]
gi|312149387|gb|ADQ29458.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
N40]
Length = 631
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|225551881|ref|ZP_03772824.1| RNA polymerase sigma factor RpoD [Borrelia sp. SV1]
gi|225371676|gb|EEH01103.1| RNA polymerase sigma factor RpoD [Borrelia sp. SV1]
Length = 631
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|195941530|ref|ZP_03086912.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 80a]
Length = 631
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|291566491|dbj|BAI88763.1| group 2 RNA polymerase sigma factor SigC [Arthrospira platensis
NIES-39]
Length = 385
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 23/158 (14%)
Query: 241 NEAEMSKGV-QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYC--- 296
EAE + GV Q NL +++ L + SL WA A GV+ LKQ +A G C
Sbjct: 68 TEAETNGGVLQTYVNLLKVRDRLCAKLSHRPSLERWAAAGGVNLAELKQIMAEGKRCWAE 127
Query: 297 -------------------REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGA 337
++ +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ +
Sbjct: 128 LANLSVEELKQVQREGIQAKDHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAV 187
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
E+FD TRGY+FSTY +WIR+ I++ +A +R I++PV
Sbjct: 188 EKFDPTRGYRFSTYSYWWIRQGITRAIATQSRTIRLPV 225
>gi|224532358|ref|ZP_03672988.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi WI91-23]
gi|224512665|gb|EEF83036.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi WI91-23]
Length = 631
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|218249968|ref|YP_002375211.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
ZS7]
gi|218165156|gb|ACK75217.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
ZS7]
Length = 631
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|223889384|ref|ZP_03623970.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
64b]
gi|223885070|gb|EEF56174.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
64b]
Length = 631
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|428226816|ref|YP_007110913.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
gi|427986717|gb|AFY67861.1| RNA polymerase, sigma subunit, RpsC/SigC [Geitlerinema sp. PCC
7407]
Length = 414
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 24/165 (14%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
RL R+EA ++G +Q + + TL G SL WA+AAGV LK LA
Sbjct: 90 RLLELRDEAAQAEGGTIQRYVQIIEARDTLTSHLGHRPSLERWAEAAGVDVTELKPILAS 149
Query: 293 G---WY-------------------CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGN 330
G W +E +IK+ LV+ +A+ Y+ G+ DL+Q G
Sbjct: 150 GKQRWAELTGLTIQELEQIQREGIRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGT 209
Query: 331 VGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+G+ + E+FD T+GY+FSTY +WIR+ I++ +A +R I++PV
Sbjct: 210 LGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 254
>gi|15595057|ref|NP_212846.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi B31]
gi|216264471|ref|ZP_03436463.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
156a]
gi|221217929|ref|ZP_03589396.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
72a]
gi|225548954|ref|ZP_03769931.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 94a]
gi|225549892|ref|ZP_03770853.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 118a]
gi|226320452|ref|ZP_03796018.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 29805]
gi|226321409|ref|ZP_03796936.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi Bol26]
gi|387826344|ref|YP_005805797.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
JD1]
gi|3915854|sp|P52323.2|RPOD_BORBU RecName: Full=RNA polymerase sigma factor RpoD; AltName:
Full=Sigma-70
gi|2688647|gb|AAC67061.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
B31]
gi|215980944|gb|EEC21751.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
156a]
gi|221192235|gb|EEE18455.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
72a]
gi|225369351|gb|EEG98803.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 118a]
gi|225370557|gb|EEG99993.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 94a]
gi|226233205|gb|EEH31957.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi Bol26]
gi|226234094|gb|EEH32809.1| RNA polymerase sigma factor RpoD [Borrelia burgdorferi 29805]
gi|312148540|gb|ADQ31199.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia burgdorferi
JD1]
Length = 631
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|256827331|ref|YP_003151290.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
gi|256583474|gb|ACU94608.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Cryptobacterium curtum
DSM 15641]
Length = 422
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 63/85 (74%)
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
A G +++LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFST
Sbjct: 179 AVGLDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFST 238
Query: 351 YVQYWIRKSISKMVARHARGIKIPV 375
Y +WIR++I++ +A AR I+IPV
Sbjct: 239 YATWWIRQAITRAIADQARTIRIPV 263
>gi|227503480|ref|ZP_03933529.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
gi|227075983|gb|EEI13946.1| RNA polymerase major sigma subunit [Corynebacterium accolens ATCC
49725]
Length = 493
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 73/116 (62%), Gaps = 6/116 (5%)
Query: 265 ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSD 324
E KAA L+ + +R L+ G + L+++ LV+ LA+ Y G G+ F D
Sbjct: 231 EGDKAAKLSP------MEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLD 284
Query: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
L+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 285 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 340
>gi|373251740|ref|ZP_09539858.1| RNA polymerase sigma factor SigA [Nesterenkonia sp. F]
Length = 476
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 104/196 (53%), Gaps = 26/196 (13%)
Query: 210 SEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVV---ANLERIKTTLEKES 266
+EA+ E +K+ ++GR I+ + + + VQVV A + +K L K+
Sbjct: 129 AEAIVENVKKAAKGEETEEEETKGRGFVISNADDDDAPAVQVVSAGATADPVKDYL-KQI 187
Query: 267 GKAASLNC--------------WAQAAGVSERVLKQHL--------AFGWYCREELIKST 304
GK + LN +A+ E++ + L A G + L+++
Sbjct: 188 GKVSLLNAEQEVDLALRIEAGLYAEHKMADEKITDRRLRRDMELVIADGRRAKNHLLEAN 247
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +
Sbjct: 248 LRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAM 307
Query: 365 ARHARGIKIPVPLFLI 380
A AR I+IPV + +
Sbjct: 308 ADQARTIRIPVHMVEV 323
>gi|319949012|ref|ZP_08023109.1| RNA polymerase sigma factor [Dietzia cinnamea P4]
gi|319437300|gb|EFV92323.1| RNA polymerase sigma factor [Dietzia cinnamea P4]
Length = 460
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 33/168 (19%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA----------------AGVS 282
AR +AE++ A+ + ++ L K+ GK A LN + A V+
Sbjct: 147 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYATWYMAQVT 199
Query: 283 ERVLK----QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
ER K Q F W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 200 ERGEKLTTAQRRDFKWIERDGVRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 259
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 260 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 307
>gi|108804647|ref|YP_644584.1| RNA polymerase sigma-28 subunit [Rubrobacter xylanophilus DSM 9941]
gi|108765890|gb|ABG04772.1| RNA polymerase, sigma 28 subunit [Rubrobacter xylanophilus DSM
9941]
Length = 304
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 58/80 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R++LI+ LV+ +A+ YRG G+PF DL+Q GN+G+++ E+FD RG++FSTY +W
Sbjct: 67 ARQKLIEKNLRLVVSVAKKYRGYGLPFEDLIQEGNIGLMKAVEKFDPERGFRFSTYATWW 126
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+++ + VA R I++PV
Sbjct: 127 IRQAVQRAVADKGRTIRVPV 146
>gi|306836272|ref|ZP_07469254.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
gi|304567864|gb|EFM43447.1| RNA polymerase sigma factor rpoD [Corynebacterium accolens ATCC
49726]
Length = 492
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 73/116 (62%), Gaps = 6/116 (5%)
Query: 265 ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSD 324
E KAA L+ + +R L+ G + L+++ LV+ LA+ Y G G+ F D
Sbjct: 230 EGDKAAKLSP------MEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLD 283
Query: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
L+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 284 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 339
>gi|428311648|ref|YP_007122625.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
gi|428253260|gb|AFZ19219.1| RNA polymerase, sigma subunit, RpsC/SigC [Microcoleus sp. PCC 7113]
Length = 417
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 70/107 (65%)
Query: 269 AASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
AA WA+ AG+S + L+Q + G +E +IK+ LV+ +A+ Y+ G+ DL+Q
Sbjct: 151 AAGKQRWAELAGLSVKELEQIQSQGNRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQE 210
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
G +G+ + E+FD T+GY+FSTY +WIR+ I++ +A +R I++PV
Sbjct: 211 GTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 257
>gi|73666941|ref|YP_302957.1| RNA polymerase sigma factor rpoD [Ehrlichia canis str. Jake]
gi|72394082|gb|AAZ68359.1| RNA polymerase, sigma 70 subunit, RpoD [Ehrlichia canis str. Jake]
Length = 622
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 64/93 (68%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 375 IQKHERAANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 434
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
YKFSTY +W+R++I++ +A AR I+IPV +
Sbjct: 435 YKFSTYATWWVRQAITRAIADQARTIRIPVHMI 467
>gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
gi|464687|sp|Q03065.1|RPSB_ANASP RecName: Full=RNA polymerase sigma-B factor
gi|424021|pir||B47017 probable transcription initiation factor sigma SigB - Anabaena sp
gi|142112|gb|AAA22046.1| RNA polymerase sigma-subunit [Nostoc sp. PCC 7120]
gi|17134700|dbj|BAB77258.1| transcription initiation factor sigma [Nostoc sp. PCC 7120]
Length = 332
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ ++ VQ + + K L ++ + +L WA + E VL Q L+
Sbjct: 34 RVPLLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQ 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD T GYKFSTY
Sbjct: 94 GQIAKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A+ +R I++P+
Sbjct: 154 YWWIRQGITRAIAQQSRTIRLPI 176
>gi|300868700|ref|ZP_07113311.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
gi|300333261|emb|CBN58503.1| RNA polymerase, sigma 28 subunit [Oscillatoria sp. PCC 6506]
Length = 462
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 76/128 (59%), Gaps = 9/128 (7%)
Query: 248 GVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPL 307
GV V+ L+RI GK WA+ AGV+ L Q + G ++ +I++ L
Sbjct: 183 GVAEVSELKRIMA-----EGK----RRWAELAGVTLEALDQMITEGIQAKDHMIQANLRL 233
Query: 308 VLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARH 367
V+ +A+ Y+ G+ DL+Q G +G+ + E+FD TRGY+FSTY +WIR+ I++ +A
Sbjct: 234 VVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGYRFSTYAYWWIRQGITRAIATQ 293
Query: 368 ARGIKIPV 375
+R I++PV
Sbjct: 294 SRTIRLPV 301
>gi|238063497|ref|ZP_04608206.1| rpoD family RNA polymerase, sigma-70 subunit [Micromonospora sp.
ATCC 39149]
gi|237885308|gb|EEP74136.1| rpoD family RNA polymerase, sigma-70 subunit [Micromonospora sp.
ATCC 39149]
Length = 534
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 64/95 (67%), Gaps = 6/95 (6%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
GW R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 287 LGWISRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 346
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
YKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 347 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 381
>gi|257791063|ref|YP_003181669.1| RpoD subfamily RNA polymerase sigma-70 subunit [Eggerthella lenta
DSM 2243]
gi|317488219|ref|ZP_07946788.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325830757|ref|ZP_08164141.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
gi|257474960|gb|ACV55280.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Eggerthella lenta
DSM 2243]
gi|316912661|gb|EFV34201.1| RNA polymerase sigma factor RpoD [Eggerthella sp. 1_3_56FAA]
gi|325487164|gb|EGC89607.1| RNA polymerase sigma factor RpoD [Eggerthella sp. HGA1]
Length = 409
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 83/133 (62%), Gaps = 6/133 (4%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCW-AQAAGVS-ERVLKQHLA----FGWYCREELIK 302
V ++ E I ++ E+G AA A+ G+ ER K+ L G +++LI+
Sbjct: 118 VPLLTAAEEIDLAMKIEAGVAAMEELEKAEDEGIELERREKRRLGRIEQVGIDAKQQLIE 177
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++
Sbjct: 178 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITR 237
Query: 363 MVARHARGIKIPV 375
+A AR I+IPV
Sbjct: 238 AIADQARTIRIPV 250
>gi|312898762|ref|ZP_07758151.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
gi|310620193|gb|EFQ03764.1| RNA polymerase sigma factor RpoD [Megasphaera micronuciformis
F0359]
Length = 437
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 67/97 (69%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG +E + ++ G +++L + LV+ +A+ Y G G+ F DL+Q GN+G+L+ E
Sbjct: 184 AGSAEGATPEEVSAGNIAKKKLTDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVE 243
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+FD+++GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 244 KFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPV 280
>gi|347542294|ref|YP_004856930.1| putative RNA polymerase sigma factor [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985329|dbj|BAK81004.1| putative RNA polymerase sigma factor [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 350
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 64/90 (71%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+KQ+ R++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G
Sbjct: 103 IKQNDVTSRMARKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDHTKG 162
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+KFSTY +WIR+SI++ +A AR I+IPV
Sbjct: 163 FKFSTYATWWIRQSITRAIADQARTIRIPV 192
>gi|159899067|ref|YP_001545314.1| RpoD family RNA polymerase sigma factor [Herpetosiphon aurantiacus
DSM 785]
gi|159892106|gb|ABX05186.1| RNA polymerase, sigma 70 subunit, RpoD family [Herpetosiphon
aurantiacus DSM 785]
Length = 386
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Query: 282 SERV-LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
S+R+ LK+H+ G R+ LI++ LV+ +A+ Y G+ DL+Q GN+G+++ E+F
Sbjct: 134 SDRISLKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQEGNIGLMRAVEKF 193
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
D+T+G+KFSTY +WIR++I++ +A +R I++PV
Sbjct: 194 DYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPV 228
>gi|160941160|ref|ZP_02088497.1| hypothetical protein CLOBOL_06053 [Clostridium bolteae ATCC
BAA-613]
gi|158435721|gb|EDP13488.1| hypothetical protein CLOBOL_06053 [Clostridium bolteae ATCC
BAA-613]
Length = 381
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 61/81 (75%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ +E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +
Sbjct: 144 FAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATW 203
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR+S+++ +A AR I++PV
Sbjct: 204 WIRQSVTRALADQARTIRVPV 224
>gi|357128311|ref|XP_003565817.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Brachypodium
distachyon]
Length = 251
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 58/79 (73%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
RE L+ +T LV ++AR Y G+G F DLLQAG +GVL GAERFD +G KFSTYV+YW
Sbjct: 13 ARERLLVTTEWLVKYIARTYTGMGTAFDDLLQAGKMGVLDGAERFDSEKGCKFSTYVKYW 72
Query: 356 IRKSISKMVARHARGIKIP 374
IRK++ ++A ++ I++P
Sbjct: 73 IRKAMLALLAENSGVIQLP 91
>gi|357055293|ref|ZP_09116365.1| hypothetical protein HMPREF9467_03337 [Clostridium clostridioforme
2_1_49FAA]
gi|355382932|gb|EHG30022.1| hypothetical protein HMPREF9467_03337 [Clostridium clostridioforme
2_1_49FAA]
Length = 381
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 61/81 (75%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ +E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +
Sbjct: 144 FAKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATW 203
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR+S+++ +A AR I++PV
Sbjct: 204 WIRQSVTRALADQARTIRVPV 224
>gi|342732217|ref|YP_004771056.1| RNA polymerase sigma factor RpoD [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|417962552|ref|ZP_12604735.1| RNA polymerase sigma factor [Candidatus Arthromitus sp. SFB-3]
gi|417965326|ref|ZP_12606875.1| RNA polymerase sigma factor [Candidatus Arthromitus sp. SFB-4]
gi|417968344|ref|ZP_12609373.1| RNA polymerase sigma factor [Candidatus Arthromitus sp. SFB-co]
gi|418016381|ref|ZP_12655946.1| RNA polymerase primary sigma factor [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418372471|ref|ZP_12964563.1| RNA polymerase sigma factor [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342329672|dbj|BAK56314.1| RNA polymerase sigma factor RpoD [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506716|gb|EGX29010.1| RNA polymerase primary sigma factor [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|380336389|gb|EIA26406.1| RNA polymerase sigma factor [Candidatus Arthromitus sp. SFB-3]
gi|380337947|gb|EIA26922.1| RNA polymerase sigma factor [Candidatus Arthromitus sp. SFB-4]
gi|380339859|gb|EIA28527.1| RNA polymerase sigma factor [Candidatus Arthromitus sp. SFB-co]
gi|380342140|gb|EIA30585.1| RNA polymerase sigma factor [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 357
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 64/90 (71%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+KQ+ R++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G
Sbjct: 110 IKQNDTTSRIARKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDHTKG 169
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+KFSTY +WIR+SI++ +A AR I+IPV
Sbjct: 170 FKFSTYATWWIRQSITRAIADQARTIRIPV 199
>gi|291298947|ref|YP_003510225.1| RpoD subfamily RNA polymerase sigma-70 subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290568167|gb|ADD41132.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Stackebrandtia
nassauensis DSM 44728]
Length = 330
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 67/102 (65%)
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
Q GV+E L + + G +E+ IK+ LV+ +AR Y G+P DL+Q GN G+++
Sbjct: 61 QPEGVTEAELGRLVLDGQKAKEQFIKANLRLVVSIARRYVRSGMPMLDLIQEGNTGLVRA 120
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
E+FD+ RG+KFSTY +WIR++IS+ +A+ R +++PV L
Sbjct: 121 VEKFDYQRGFKFSTYATWWIRQAISRAIAQQERTVRLPVHLV 162
>gi|119493081|ref|ZP_01624006.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
gi|119452826|gb|EAW34001.1| Sigma 28 (Flagella/Sporulation) [Lyngbya sp. PCC 8106]
Length = 331
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 79/137 (57%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A E E+++ ++ + + ++ L E G+ + A A G+SE L G ++
Sbjct: 36 ANEEIELARQIKALVTFKELEEELTHELGRCPQSSELATATGLSEAELNHQFQQGIIAKQ 95
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++I S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+
Sbjct: 96 KMISSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRATEKFDPDKGYKFSTYAYWWIRQ 155
Query: 359 SISKMVARHARGIKIPV 375
I++ +A R +++PV
Sbjct: 156 GITRTIANQGRTVRLPV 172
>gi|596248|gb|AAC44104.1| primary sigma factor [Borrelia burgdorferi]
Length = 543
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 229 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 288
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 289 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 338
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 339 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 385
>gi|428306280|ref|YP_007143105.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
gi|428247815|gb|AFZ13595.1| RNA polymerase, sigma subunit, RpsC/SigC [Crinalium epipsammum PCC
9333]
Length = 422
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 102/186 (54%), Gaps = 18/186 (9%)
Query: 190 KLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGRRLTIARNEAEMSKGV 249
+L+T S+E+++TS + E LQ ++ I + +R + G R ++ R AE
Sbjct: 95 ELRTTATSQENLDTSQV----ECLQLYIR--LIEAHDRLASQLGHRPSLERWAAEAHIA- 147
Query: 250 QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVL 309
L +K TL A WA+ AG++ L+Q G +E +IK+ LV+
Sbjct: 148 -----LSELKPTL------VAGKRSWAEVAGLTVPDLEQIQKEGLQAKEHMIKANLRLVV 196
Query: 310 FLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHAR 369
+A+ Y+ G+ DL+Q G +G+ + E+FD T+GY+FSTY +WIR+ I++ +A +R
Sbjct: 197 SVAKKYQNRGLELLDLIQEGTMGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSR 256
Query: 370 GIKIPV 375
I++PV
Sbjct: 257 TIRLPV 262
>gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|8489803|gb|AAF75759.1|AF262218_1 group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
gi|17133384|dbj|BAB75948.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120]
Length = 390
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 85/137 (62%), Gaps = 6/137 (4%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAG---VSERVLKQHLAFGWYCRE 298
E E+++ V+ + + ++ L+ + G+ + AQ AG ++E+ L+ L G +
Sbjct: 98 EVELARRVRFLEEVRDLQADLQLQIGQHPTK---AQVAGQLEITEKQLENRLYQGRVAKR 154
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
++I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR+
Sbjct: 155 KMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQ 214
Query: 359 SISKMVARHARGIKIPV 375
+I++ +A AR I++P+
Sbjct: 215 AITRAIANDARTIRLPI 231
>gi|384455624|ref|YP_005668219.1| putative RNA polymerase sigma factor [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|346983967|dbj|BAK79643.1| putative RNA polymerase sigma factor [Candidatus Arthromitus sp.
SFB-mouse-Yit]
Length = 350
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 64/90 (71%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+KQ+ R++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G
Sbjct: 103 IKQNDTTSRIARKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDHTKG 162
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+KFSTY +WIR+SI++ +A AR I+IPV
Sbjct: 163 FKFSTYATWWIRQSITRAIADQARTIRIPV 192
>gi|218282286|ref|ZP_03488585.1| hypothetical protein EUBIFOR_01167 [Eubacterium biforme DSM 3989]
gi|218216721|gb|EEC90259.1| hypothetical protein EUBIFOR_01167 [Eubacterium biforme DSM 3989]
Length = 409
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 63/90 (70%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L + +A G ++ LI S LV+ +A+ Y G G+ F DL+Q GN G+++ E+FD+T+G
Sbjct: 161 LAKIIADGEEAKQTLISSNLRLVVSIAKKYVGRGMLFLDLIQEGNCGLIKAVEKFDYTKG 220
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+KFSTY +WIR+SI++ +A AR I+IPV
Sbjct: 221 FKFSTYATWWIRQSITRAIADQARTIRIPV 250
>gi|134098380|ref|YP_001104041.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|291006918|ref|ZP_06564891.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338]
gi|133911003|emb|CAM01116.1| RNA polymerase major sigma factor [Saccharopolyspora erythraea NRRL
2338]
Length = 467
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 227 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 286
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 287 TWWIRQAITRAMADQARTIRIPVHMVEV 314
>gi|333919432|ref|YP_004493013.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
gi|333481653|gb|AEF40213.1| RNA polymerase sigma factor [Amycolicicoccus subflavus DQS3-9A1]
Length = 503
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 69/99 (69%), Gaps = 4/99 (4%)
Query: 286 LKQHLAF----GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
L+Q+L++ G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD
Sbjct: 252 LRQNLSWVVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 311
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 312 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 350
>gi|358068536|ref|ZP_09154998.1| hypothetical protein HMPREF9333_01879 [Johnsonella ignava ATCC
51276]
gi|356693353|gb|EHI55032.1| hypothetical protein HMPREF9333_01879 [Johnsonella ignava ATCC
51276]
Length = 427
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 66/91 (72%)
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
K+ A Y +++LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+
Sbjct: 182 KRKQAGDEYAKQKLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGF 241
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
K STY +WIR+S+++ +A AR I++PV +
Sbjct: 242 KLSTYATWWIRQSVTRALADQARTIRVPVHM 272
>gi|427717976|ref|YP_007065970.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
7507]
gi|427350412|gb|AFY33136.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
7507]
Length = 371
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 82/134 (61%), Gaps = 6/134 (4%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + ++ +L+ G+ A+ ++E+ L+ L G + ++I
Sbjct: 85 EVELARRVRFIEEVRELQASLQATKGQVAA------ELDMTEKQLESRLYQGRVAKRKMI 138
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 139 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 198
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 199 RAIANDARTIRLPI 212
>gi|452948554|gb|EME54032.1| RNA polymerase primary sigma factor [Amycolatopsis decaplanina DSM
44594]
Length = 466
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 66/97 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 217 RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 276
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 277 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 313
>gi|343128010|ref|YP_004777941.1| RNA polymerase sigma factor RpoD [Borrelia bissettii DN127]
gi|342222698|gb|AEL18876.1| RNA polymerase sigma factor RpoD [Borrelia bissettii DN127]
Length = 613
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 299 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 358
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 359 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 408
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 409 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 455
>gi|68171251|ref|ZP_00544654.1| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70
region 4:Sigma-70, non-essential region:Sigma-70 region
1.2 [Ehrlichia chaffeensis str. Sapulpa]
gi|88657966|ref|YP_507558.1| RNA polymerase sigma factor RpoD [Ehrlichia chaffeensis str.
Arkansas]
gi|67999333|gb|EAM85979.1| Sigma-70 region 1.1:Sigma-70 region 3:Sigma-70 region 2:Sigma-70
region 4:Sigma-70, non-essential region:Sigma-70 region
1.2 [Ehrlichia chaffeensis str. Sapulpa]
gi|88599423|gb|ABD44892.1| RNA polymerase sigma factor RpoD [Ehrlichia chaffeensis str.
Arkansas]
Length = 622
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 64/93 (68%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 375 IQKHERAANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 434
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
YKFSTY +W+R++I++ +A AR I+IPV +
Sbjct: 435 YKFSTYATWWVRQAITRAIADQARTIRIPVHMI 467
>gi|149178485|ref|ZP_01857074.1| transcription initiation factor sigma 70 [Planctomyces maris DSM
8797]
gi|148842698|gb|EDL57072.1| transcription initiation factor sigma 70 [Planctomyces maris DSM
8797]
Length = 588
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 56/72 (77%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ YR G+ F DL+Q GN G+++G E++++ RGYKFSTY +WIR++I++ VA
Sbjct: 331 LVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYEYRRGYKFSTYATWWIRQAITRAVAD 390
Query: 367 HARGIKIPVPLF 378
HAR I+IPV +F
Sbjct: 391 HARTIRIPVHMF 402
>gi|220907092|ref|YP_002482403.1| RNA polymerase sigma factor SigD [Cyanothece sp. PCC 7425]
gi|219863703|gb|ACL44042.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp.
PCC 7425]
Length = 318
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ +A +++++ L G L WA AA +SE L+ +
Sbjct: 20 RVPLLTHEQEILYGKQVQQLAIVQQVREELSDRLGHEPDLTEWATAAKLSEAELQGVVNR 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPI 162
>gi|57239060|ref|YP_180196.1| RNA polymerase sigma factor rpoD [Ehrlichia ruminantium str.
Welgevonden]
gi|58579003|ref|YP_197215.1| RNA polymerase sigma factor rpoD [Ehrlichia ruminantium str.
Welgevonden]
gi|58617062|ref|YP_196261.1| RNA polymerase sigma factor rpoD [Ehrlichia ruminantium str.
Gardel]
gi|57161139|emb|CAH58052.1| RNA polymerase sigma-70 factor [Ehrlichia ruminantium str.
Welgevonden]
gi|58416674|emb|CAI27787.1| RNA polymerase sigma factor rpoD [Ehrlichia ruminantium str.
Gardel]
gi|58417629|emb|CAI26833.1| RNA polymerase sigma factor rpoD [Ehrlichia ruminantium str.
Welgevonden]
Length = 622
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 64/93 (68%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 375 IQKHERAATQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 434
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
YKFSTY +W+R++I++ +A AR I+IPV +
Sbjct: 435 YKFSTYATWWVRQAITRAIADQARTIRIPVHMI 467
>gi|282899735|ref|ZP_06307698.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
gi|281195350|gb|EFA70284.1| sigD (sigma 28 (flagella/spoulation)) [Cylindrospermopsis
raciborskii CS-505]
Length = 332
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 78/129 (60%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ L K L +E + SL WA+AA + + L + L G + +++++
Sbjct: 48 KQVQKSTALYETKDNLAQELNRQPSLEEWAKAAQLDPQELNRLLGQGEIAKRKMVEANLR 107
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y + DL+Q G++G+ +G E+FD ++GY+FSTY +WIR++I++ +A
Sbjct: 108 LVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYAYWWIRQAITRAIAE 167
Query: 367 HARGIKIPV 375
AR I++P+
Sbjct: 168 KARTIRLPI 176
>gi|392531525|ref|ZP_10278662.1| RNA polymerase sigma-43 factor [Carnobacterium maltaromaticum ATCC
35586]
gi|414084160|ref|YP_006992868.1| RNA polymerase sigma factor RpoD [Carnobacterium maltaromaticum
LMA28]
gi|412997744|emb|CCO11553.1| RNA polymerase sigma factor RpoD [Carnobacterium maltaromaticum
LMA28]
Length = 370
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 74/115 (64%), Gaps = 5/115 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ L A+ ++E+VL+ + R L ++ LV+ +A+ Y G G+ F
Sbjct: 107 KEIGQV-DLLTGAEEVTLAEQVLEGN----QDARNHLAEANLRLVVSIAKRYMGRGMQFL 161
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
DL+Q GN+G+++ E+FDHT+G+KFSTY +WIR+SI++ +A AR I+IPV +
Sbjct: 162 DLIQEGNLGLMKAVEKFDHTKGFKFSTYATWWIRQSITRSIADQARTIRIPVHMI 216
>gi|350270188|ref|YP_004881496.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
gi|348595030|dbj|BAK98990.1| RNA polymerase sigma factor SigA [Oscillibacter valericigenes
Sjm18-20]
Length = 493
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 65/90 (72%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK+ L G +++L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 231 LKKALHSGENAKQKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKG 290
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPV 375
YKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 291 YKFSTYATWWIRQAITRAIADQARTIRIPV 320
>gi|159897807|ref|YP_001544054.1| RNA polymerase sigma-32 subunit RpoH [Herpetosiphon aurantiacus DSM
785]
gi|159890846|gb|ABX03926.1| RNA polymerase, sigma 32 subunit, RpoH [Herpetosiphon aurantiacus
DSM 785]
Length = 303
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 58/78 (74%)
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
E+L+++ LV+ +A+ YRG G+PF DL+Q GN+G++ ERFD T+G +FSTY +WIR
Sbjct: 76 EQLVRANLRLVVSIAKRYRGFGLPFQDLIQEGNIGLMNAIERFDATKGVRFSTYATWWIR 135
Query: 358 KSISKMVARHARGIKIPV 375
++I++ +A R I++PV
Sbjct: 136 QAITRSLANQGRLIRLPV 153
>gi|375090808|ref|ZP_09737120.1| RNA polymerase sigma factor rpoD [Facklamia languida CCUG 37842]
gi|374564970|gb|EHR36249.1| RNA polymerase sigma factor rpoD [Facklamia languida CCUG 37842]
Length = 379
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 60/80 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G+KFSTY +W
Sbjct: 142 AKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDHTKGFKFSTYATWW 201
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 202 IRQAITRAIADQARTIRIPV 221
>gi|86605925|ref|YP_474688.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
gi|86554467|gb|ABC99425.1| RNA polymerase sigma factor [Synechococcus sp. JA-3-3Ab]
Length = 318
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 78/130 (60%), Gaps = 1/130 (0%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLV 308
+ + ++R+ LE+ + SL W++ G+ L+Q L G ++ +++ LV
Sbjct: 30 LHLAHQVQRMMALLEQRR-QHESLEDWSRRLGIPLEELQQILRQGEAAKKRMVECNLRLV 88
Query: 309 LFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368
+ +A+ YR G+PF DL+Q G +G+ + E+FD TRGYKFSTY +WIR+S+++ +
Sbjct: 89 VSIAKRYRNRGLPFLDLIQEGTIGLTRAVEKFDPTRGYKFSTYATWWIRQSVNRGIQNKG 148
Query: 369 RGIKIPVPLF 378
R I++P ++
Sbjct: 149 RLIRLPAHMY 158
>gi|443289602|ref|ZP_21028696.1| RNA polymerase sigma factor rpoD [Micromonospora lupini str. Lupac
08]
gi|385887217|emb|CCH16770.1| RNA polymerase sigma factor rpoD [Micromonospora lupini str. Lupac
08]
Length = 534
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 64/95 (67%), Gaps = 6/95 (6%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
GW R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 287 LGWISRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 346
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
YKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 347 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 381
>gi|342213895|ref|ZP_08706614.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
gi|341597483|gb|EGS40042.1| RNA polymerase sigma factor RpoD [Veillonella sp. oral taxon 780
str. F0422]
Length = 410
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 66/97 (68%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + G +++LI + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 157 AGNQEGATYKEVRLGSSAKQKLIDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 216
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 217 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 253
>gi|260583936|ref|ZP_05851684.1| RNA polymerase sigma-43 factor [Granulicatella elegans ATCC 700633]
gi|260158562|gb|EEW93630.1| RNA polymerase sigma-43 factor [Granulicatella elegans ATCC 700633]
Length = 374
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 60/80 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G+KFSTY +W
Sbjct: 136 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKAVEKFDHTKGFKFSTYATWW 195
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 196 IRQAITRAIADQARTIRIPV 215
>gi|160902123|ref|YP_001567704.1| RpoD family RNA polymerase sigma factor [Petrotoga mobilis SJ95]
gi|160359767|gb|ABX31381.1| RNA polymerase, sigma 70 subunit, RpoD family [Petrotoga mobilis
SJ95]
Length = 418
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 60/82 (73%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+ELIK+ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD +G+KFSTY +W
Sbjct: 177 ARDELIKANLRLVISIAKRYTGRGLTFLDLIQEGNIGLIKAVDKFDWRKGFKFSTYATWW 236
Query: 356 IRKSISKMVARHARGIKIPVPL 377
IR++I++ +A AR I+IPV L
Sbjct: 237 IRQAITRAIADQARTIRIPVHL 258
>gi|126697159|ref|YP_001092045.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9301]
gi|126544202|gb|ABO18444.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9301]
Length = 344
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ +ER + + + +G S++ + +S V+K+ L
Sbjct: 46 RVPLLSHEQEITLGRQVQEYMQVERAELEISELTGDKPSIDELSTKLNLSTSVIKKRLRA 105
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD RGYKFSTY
Sbjct: 106 GQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYA 165
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 166 YWWIRQGITRAIAEKSRAIRLPI 188
>gi|298490014|ref|YP_003720191.1| RpoD subfamily RNA polymerase sigma 70 subunit ['Nostoc azollae'
0708]
gi|298231932|gb|ADI63068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily ['Nostoc azollae'
0708]
Length = 332
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 82/143 (57%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L ++ L + G +L WA +A V L +A
Sbjct: 34 RVPLLTHEEEIHYGKQVQRCTTLYEVRENLATQLGYQPTLEEWAASAQVEPVELNTAIAE 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y I DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEIAKRRMVEANLRLVVSVAKKYIKRNIDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I++P+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPI 176
>gi|260424772|ref|ZP_05733235.2| RNA polymerase sigma-43 factor [Dialister invisus DSM 15470]
gi|260403136|gb|EEW96683.1| RNA polymerase sigma-43 factor [Dialister invisus DSM 15470]
Length = 394
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 61/82 (74%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E+ + LV+ +A+ Y G G+PF DL+Q GN+G+L+ ++FD+T+GYKFSTY +W
Sbjct: 161 AKKEMANANLRLVVSIAKKYPGRGMPFLDLIQEGNMGLLKAVDKFDYTKGYKFSTYATWW 220
Query: 356 IRKSISKMVARHARGIKIPVPL 377
IR++I++ +A AR I++PV +
Sbjct: 221 IRQAITRSIADQARTIRVPVHM 242
>gi|340354650|ref|ZP_08677352.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
gi|339623173|gb|EGQ27678.1| DNA-directed RNA polymerase sigma subunit SigA [Sporosarcina
newyorkensis 2681]
Length = 389
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Query: 271 SLNCWAQAAGVSERVLKQHLAF--GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQA 328
S+ A+ A +E K A G +++L ++ LV+ +A+ Y G G+ F DL+Q
Sbjct: 125 SIEAEAELAETNEMTPKIDAAIIRGENAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQE 184
Query: 329 GNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
GN+G+++ E+FDHT+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 185 GNMGLIKAVEKFDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 231
>gi|227488750|ref|ZP_03919066.1| RNA polymerase sigma factor A [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227091172|gb|EEI26484.1| RNA polymerase sigma factor A [Corynebacterium glucuronolyticum
ATCC 51867]
Length = 599
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 359 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 418
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 419 TWWIRQAITRAMADQARTIRIPVHMVEV 446
>gi|405979920|ref|ZP_11038261.1| RNA polymerase principal sigma factor hrdB [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391295|gb|EJZ86359.1| RNA polymerase principal sigma factor hrdB [Actinomyces turicensis
ACS-279-V-Col4]
Length = 619
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 379 GQLAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 438
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 439 TWWIRQAITRAMADQARTIRIPVHMVEV 466
>gi|222053802|ref|YP_002536164.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacter daltonii
FRC-32]
gi|221563091|gb|ACM19063.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter
daltonii FRC-32]
Length = 586
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 76/124 (61%), Gaps = 8/124 (6%)
Query: 256 ERIKTTLEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARN 314
ER +E+ESG KA+ L+ QA E K + EL+++ LV+ +A+
Sbjct: 315 ERKLKKIEQESGFKASELSTALQAIEEGEHKAK-------LAKSELVEANLRLVVSIAKK 367
Query: 315 YRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIP 374
Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+IP
Sbjct: 368 YTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIP 427
Query: 375 VPLF 378
V +
Sbjct: 428 VHMI 431
>gi|298244288|ref|ZP_06968094.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
gi|297551769|gb|EFH85634.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Ktedonobacter
racemifer DSM 44963]
Length = 334
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 286 LKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTR 344
L + +A G Y R+ LI++ LV+ +A+ Y G+P DL+Q GN+G+++ ++FD+ R
Sbjct: 85 LAERVARGDQYARQRLIEANLRLVVSIAKRYSNQGLPLLDLIQEGNIGLMRATQKFDYKR 144
Query: 345 GYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
G++FSTY +WIR++IS+ +A H+R I IPV
Sbjct: 145 GFRFSTYATWWIRQAISRAIAEHSRSIHIPV 175
>gi|227542254|ref|ZP_03972303.1| RNA polymerase sigma factor A [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227182083|gb|EEI63055.1| RNA polymerase sigma factor A [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 603
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 363 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 422
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 423 TWWIRQAITRAMADQARTIRIPVHMVEV 450
>gi|317506478|ref|ZP_07964279.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
gi|316255239|gb|EFV14508.1| sigma-70 protein [Segniliparus rugosus ATCC BAA-974]
Length = 348
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 16/176 (9%)
Query: 206 LSLPSEALQEGL--KQPTIFSAERALNSRGRR-LTIARNEAEMSKGVQVVANLERIKTTL 262
L + SE LQE L + P LN GR L A +E ++K ++ E + T
Sbjct: 31 LHVASERLQEDLDTQSPAADLVRVYLNGIGRTALLTAEDEVTLAKSIEAGLYAEHLINTS 90
Query: 263 EKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPF 322
E + + R LK + G R L+++ LV+ LA+ Y G GIP
Sbjct: 91 EGLTPQ-------------RRRELKAVVRDGRAARTHLLEANLRLVVSLAKRYTGRGIPL 137
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
DL+Q GN+G+++ E+FD+++G+KFSTY +WIR++I++ VA +R I++PV L
Sbjct: 138 LDLIQEGNLGLIRAMEKFDYSKGFKFSTYATWWIRQAITRGVADQSRTIRLPVHLV 193
>gi|297625160|ref|YP_003706594.1| RpoD subfamily RNA polymerase sigma-70 subunit [Truepera
radiovictrix DSM 17093]
gi|297166340|gb|ADI16051.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Truepera
radiovictrix DSM 17093]
Length = 446
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Query: 265 ESGKAASLNCWAQAAGVSER---VLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIP 321
E G+AA + + ER LK+ + G R+ LI++ LV+ +A+ Y G G+
Sbjct: 172 EEGEAAQKRLDEEGDSLPEREQRALKRIVEDGEMARQHLIEANLRLVVSIAKKYTGRGLS 231
Query: 322 FSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
F DL+Q GN G+++ E+F++ R YKFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 232 FLDLIQEGNQGLIRAVEKFEYRRRYKFSTYATWWIRQAINRAIADQARTIRIPVHM 287
>gi|419718484|ref|ZP_14245801.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
gi|383305319|gb|EIC96687.1| RNA polymerase sigma factor RpoD [Lachnoanaerobaculum saburreum
F0468]
Length = 407
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 62/83 (74%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 169 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 228
Query: 355 WIRKSISKMVARHARGIKIPVPL 377
WIR+S+++ +A AR I++PV +
Sbjct: 229 WIRQSVTRALADQARTIRVPVHM 251
>gi|269926941|ref|YP_003323564.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermobaculum
terrenum ATCC BAA-798]
gi|269790601|gb|ACZ42742.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermobaculum
terrenum ATCC BAA-798]
Length = 596
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
A A + +++ K +A G R+ LI++ LV+ +A+ Y G GI DL+Q GN+G+++
Sbjct: 236 ANQADIQDKITK-WIAEGDIARKRLIEANLRLVVSIAKKYTGRGITLLDLIQEGNIGLIK 294
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
E+F H +GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 295 AVEKFRHQKGYKFSTYATWWIRQAITRAIADQARTIRIPV 334
>gi|256832655|ref|YP_003161382.1| RpoD subfamily RNA polymerase sigma-70 subunit [Jonesia
denitrificans DSM 20603]
gi|256686186|gb|ACV09079.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Jonesia
denitrificans DSM 20603]
Length = 504
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 71/109 (65%), Gaps = 6/109 (5%)
Query: 278 AAGVSERVLKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
AAGV+E K + W ++ L+++ LV+ LA+ Y G G+ F DL+Q GN+
Sbjct: 243 AAGVAEGDRKLEREYRWIIQDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNL 302
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 303 GLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 351
>gi|255325126|ref|ZP_05366232.1| RNA polymerase major sigma subunit [Corynebacterium
tuberculostearicum SK141]
gi|311739588|ref|ZP_07713423.1| RNA polymerase sigma factor rpoD [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255297691|gb|EET77002.1| RNA polymerase major sigma subunit [Corynebacterium
tuberculostearicum SK141]
gi|311305404|gb|EFQ81472.1| RNA polymerase sigma factor rpoD [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 490
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 73/116 (62%), Gaps = 6/116 (5%)
Query: 265 ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSD 324
E KAA L+ + +R L+ G + L+++ LV+ LA+ Y G G+ F D
Sbjct: 228 EGDKAAKLSP------MEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLD 281
Query: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
L+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 282 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 337
>gi|427412602|ref|ZP_18902794.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
gi|425716409|gb|EKU79393.1| RNA polymerase sigma factor RpoD [Veillonella ratti
ACS-216-V-Col6b]
Length = 394
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 67/100 (67%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG + + + G +++LI + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 141 AGAKDDASYKEMKAGEKAKQKLIDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 200
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 201 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMV 240
>gi|443311966|ref|ZP_21041588.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442778041|gb|ELR88312.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 327
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 79/129 (61%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + +L K L K+ + + + WA ++ L + + G ++++I++
Sbjct: 43 KQVQQMMSLLEAKEALAKQLHREPTSDEWATQVDIAAAELPETIKRGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPMRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPV 375
AR I++P+
Sbjct: 163 QARTIRLPI 171
>gi|227833276|ref|YP_002834983.1| RNA polymerase sigma factor [Corynebacterium aurimucosum ATCC
700975]
gi|262184260|ref|ZP_06043681.1| RNA polymerase sigma factor [Corynebacterium aurimucosum ATCC
700975]
gi|227454292|gb|ACP33045.1| RNA polymerase sigma factor A [Corynebacterium aurimucosum ATCC
700975]
Length = 485
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 245 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 304
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 305 TWWIRQAITRAMADQARTIRIPVHMVEV 332
>gi|315652381|ref|ZP_07905370.1| RNA polymerase sigma factor rpoD [Lachnoanaerobaculum saburreum DSM
3986]
gi|315485355|gb|EFU75748.1| RNA polymerase sigma factor rpoD [Lachnoanaerobaculum saburreum DSM
3986]
Length = 410
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 62/83 (74%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 172 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 231
Query: 355 WIRKSISKMVARHARGIKIPVPL 377
WIR+S+++ +A AR I++PV +
Sbjct: 232 WIRQSVTRALADQARTIRVPVHM 254
>gi|425445125|ref|ZP_18825161.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
gi|389734954|emb|CCI01463.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9443]
Length = 435
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 69/103 (66%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA AG+ L++ +A G + +E++IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 175 WAHLAGLEVGELEEIIALGTHAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 234
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
+ E+FD T+GY+FSTY +WIR+ +++ +A +R I++PV +
Sbjct: 235 RAVEKFDPTKGYRFSTYAYWWIRQGMTRAIATQSRMIRLPVHI 277
>gi|1553017|gb|AAC45100.1| primary sigma factor, partial [Borrelia burgdorferi 297]
Length = 450
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E + K S
Sbjct: 153 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPTDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 309
>gi|359771702|ref|ZP_09275148.1| RNA polymerase sigma factor SigA [Gordonia effusa NBRC 100432]
gi|359311138|dbj|GAB17926.1| RNA polymerase sigma factor SigA [Gordonia effusa NBRC 100432]
Length = 476
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 236 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 295
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 296 TWWIRQAITRAMADQARTIRIPVHMVEV 323
>gi|374340623|ref|YP_005097359.1| sigma-70 family RNA polymerase sigma factor [Marinitoga piezophila
KA3]
gi|372102157|gb|AEX86061.1| RNA polymerase sigma factor, sigma-70 family [Marinitoga piezophila
KA3]
Length = 419
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 59/80 (73%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+ELIK+ LV+ +A+ Y G G+ F DL+Q GN+G+++ +FD+ +G+KFSTY +W
Sbjct: 174 ARDELIKANLRLVISIAKKYIGRGLSFLDLIQEGNIGLIKAVNKFDYKKGFKFSTYATWW 233
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 234 IRQAITRAIADQARTIRIPV 253
>gi|237785650|ref|YP_002906355.1| RNA polymerase sigma factor [Corynebacterium kroppenstedtii DSM
44385]
gi|237758562|gb|ACR17812.1| RNA polymerase sigma factor A [Corynebacterium kroppenstedtii DSM
44385]
Length = 621
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 381 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 440
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 441 TWWIRQAITRSMADQARTIRIPVHMVEV 468
>gi|429758682|ref|ZP_19291195.1| RNA polymerase sigma factor RpoD [Actinomyces sp. oral taxon 181
str. F0379]
gi|429172896|gb|EKY14433.1| RNA polymerase sigma factor RpoD [Actinomyces sp. oral taxon 181
str. F0379]
Length = 545
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 305 GQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 364
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 365 TWWIRQAITRAMADQARTIRIPVHMVEV 392
>gi|284046131|ref|YP_003396471.1| RpoD subfamily RNA polymerase sigma-70 subunit [Conexibacter woesei
DSM 14684]
gi|283950352|gb|ADB53096.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Conexibacter
woesei DSM 14684]
Length = 367
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 62/80 (77%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++++++S LV+ +A+NYR G+PF DL+Q G +G+++ AE+FD+ +G+KFSTY +W
Sbjct: 131 AKQKMVESNLRLVVSIAKNYRNQGLPFLDLIQEGTLGLVRAAEKFDYRKGFKFSTYATWW 190
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 191 IRQAIARALADKARTIRIPV 210
>gi|302543058|ref|ZP_07295400.1| RNA polymerase principal sigma factor HrdD [Streptomyces
hygroscopicus ATCC 53653]
gi|302460676|gb|EFL23769.1| RNA polymerase principal sigma factor HrdD [Streptomyces
himastatinicus ATCC 53653]
Length = 333
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 81/140 (57%), Gaps = 10/140 (7%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCRE 298
A E E+S+ V+ ++I +++G AAG S L+ A G ++
Sbjct: 50 AAKEVELSQAVEAGVYAQQILDGEAEDTG----------AAGASREELEAIAAEGARAKD 99
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
I+S LV+ +AR Y G+P DL+Q GN G+++ E+FD+T+G+KFSTY +WIR+
Sbjct: 100 VFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYTKGFKFSTYATWWIRQ 159
Query: 359 SISKMVARHARGIKIPVPLF 378
+I++ +A +R I++PV L
Sbjct: 160 AITRSIADQSRTIRLPVHLV 179
>gi|358445404|ref|ZP_09156014.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
gi|356608850|emb|CCE54263.1| RNA polymerase sigma factor [Corynebacterium casei UCMA 3821]
Length = 472
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 232 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 291
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 292 TWWIRQAITRAMADQARTIRIPVHMVEV 319
>gi|410679495|ref|YP_006931897.1| RNA polymerase sigma factor RpoD [Borrelia afzelii HLJ01]
gi|408536883|gb|AFU75014.1| RNA polymerase sigma factor RpoD [Borrelia afzelii HLJ01]
Length = 543
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 92/167 (55%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|354617029|ref|ZP_09034545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
gi|353218616|gb|EHB83339.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Saccharomonospora
paurometabolica YIM 90007]
Length = 464
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 85/143 (59%), Gaps = 11/143 (7%)
Query: 239 ARNEAEMSKGVQV-VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCR 297
A E E++K ++ + ERI+ T +E G+ S R LK + G +
Sbjct: 179 AEEEVELAKRIEAGLYAAERIRVT--EEEGEKLSTQM--------RRDLKWIVRDGERAK 228
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR
Sbjct: 229 SHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIR 288
Query: 358 KSISKMVARHARGIKIPVPLFLI 380
++I++ +A AR I+IPV + +
Sbjct: 289 QAITRAMADQARTIRIPVHMVEV 311
>gi|111115542|ref|YP_710160.1| RNA polymerase sigma factor RpoD [Borrelia afzelii PKo]
gi|384207197|ref|YP_005592919.1| RNA polymerase sigma factor RpoD [Borrelia afzelii PKo]
gi|110890816|gb|ABH01984.1| RNA polymerase sigma-70 factor [Borrelia afzelii PKo]
gi|342857081|gb|AEL69929.1| RNA polymerase sigma factor RpoD [Borrelia afzelii PKo]
Length = 631
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|392308108|ref|ZP_10270642.1| RNA polymerase sigma factor [Pseudoalteromonas citrea NCIMB 1889]
Length = 612
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 90/144 (62%), Gaps = 10/144 (6%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS-ERV--LKQHLAFGWY--- 295
+AE++ G + A L +K +E+ K L+ ++ G+S ER+ + + ++ G
Sbjct: 314 DAEIAAGEKYSAKLAEVKPEIERCINK---LSVIEESTGLSIERIKDINRRMSIGEAKAR 370
Query: 296 -CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +
Sbjct: 371 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 430
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A AR I+IPV +
Sbjct: 431 WIRQAITRSIADQARTIRIPVHMI 454
>gi|227504950|ref|ZP_03934999.1| RNA polymerase major sigma subunit [Corynebacterium striatum ATCC
6940]
gi|227198459|gb|EEI78507.1| RNA polymerase major sigma subunit [Corynebacterium striatum ATCC
6940]
Length = 465
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 6/114 (5%)
Query: 265 ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSD 324
E KAA L+ + +R L+ G + L+++ LV+ LA+ Y G G+ F D
Sbjct: 203 EGDKAAKLSP------MEKRDLRSIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLD 256
Query: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
L+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 257 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMV 310
>gi|186685842|ref|YP_001869038.1| RNA polymerase sigma factor SigD [Nostoc punctiforme PCC 73102]
gi|186468294|gb|ACC84095.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ L + +L + G+ +L WA+A + L + +A
Sbjct: 34 RVPLLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATKLEPVELNEAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I++P+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPI 176
>gi|451338995|ref|ZP_21909521.1| RNA polymerase sigma factor RpoD [Amycolatopsis azurea DSM 43854]
gi|449418374|gb|EMD23965.1| RNA polymerase sigma factor RpoD [Amycolatopsis azurea DSM 43854]
Length = 466
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 66/97 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 217 RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 276
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 277 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 313
>gi|376251494|ref|YP_005138375.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC03]
gi|372112998|gb|AEX79057.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC03]
Length = 530
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 290 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 349
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 350 TWWIRQAITRAMADQARTIRIPVHMVEV 377
>gi|375291076|ref|YP_005125616.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae 241]
gi|375293282|ref|YP_005127821.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae INCA
402]
gi|376243011|ref|YP_005133863.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae CDCE
8392]
gi|376245908|ref|YP_005136147.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC01]
gi|376284915|ref|YP_005158125.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae 31A]
gi|376290613|ref|YP_005162860.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae C7
(beta)]
gi|376293415|ref|YP_005165089.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC02]
gi|419860975|ref|ZP_14383615.1| RNA polymerase sigma factor [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|371578430|gb|AEX42098.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae 31A]
gi|371580747|gb|AEX44414.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae 241]
gi|371582953|gb|AEX46619.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae INCA
402]
gi|372104009|gb|AEX67606.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae C7
(beta)]
gi|372106253|gb|AEX72315.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae CDCE
8392]
gi|372108538|gb|AEX74599.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC01]
gi|372110738|gb|AEX76798.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC02]
gi|387982659|gb|EIK56160.1| RNA polymerase sigma factor [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 526
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 286 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 345
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 346 TWWIRQAITRAMADQARTIRIPVHMVEV 373
>gi|365839537|ref|ZP_09380773.1| RNA polymerase sigma factor RpoD, partial [Anaeroglobus geminatus
F0357]
gi|364564505|gb|EHM42269.1| RNA polymerase sigma factor RpoD, partial [Anaeroglobus geminatus
F0357]
Length = 398
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 68/99 (68%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG +E + ++ G +++L + LV+ +A+ Y G G+ F DL+Q GN+G+L+ E
Sbjct: 145 AGGAEGATAEEISTGNIAKKKLTDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVE 204
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
+FD+++GYKFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 205 KFDYSKGYKFSTYATWWIRQAITRAIADQARTIRIPVHM 243
>gi|254421657|ref|ZP_05035375.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
gi|196189146|gb|EDX84110.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family,
putative [Synechococcus sp. PCC 7335]
Length = 467
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 78/134 (58%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+++ +E + + + A A G +E L+Q L + +I
Sbjct: 175 EIELARQVRIIVEIEDYSEKASETLKRRPTHAELATAFGYTEGQLRQKLRQARAAKRRMI 234
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + AE+FD +GYKFSTY +WIR+ I+
Sbjct: 235 RSNLRLVVSIAKRYLNRGVPFLDLIQEGALGLNRAAEKFDPDKGYKFSTYAYWWIRQGIT 294
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 295 RTIANDARTIRLPI 308
>gi|216263390|ref|ZP_03435385.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia afzelii
ACA-1]
gi|215980234|gb|EEC21055.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia afzelii
ACA-1]
Length = 631
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA + E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKKIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|428208314|ref|YP_007092667.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428010235|gb|AFY88798.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 318
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV ++ L ++ L + G+ +L W++AA + + L +A
Sbjct: 20 RVPLLTHEQEIVYGKQVQRLSTLYALQEELVAKLGREPTLEEWSEAARIDKTALSTAIAE 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 GEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 140 YWWIRQAITRAIAEKGRTIRLPI 162
>gi|409202667|ref|ZP_11230870.1| RNA polymerase sigma factor [Pseudoalteromonas flavipulchra JG1]
Length = 616
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 89/144 (61%), Gaps = 10/144 (6%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS-ERV--LKQHLAFGWY--- 295
+AE++ G + A L +K +E+ K L + + G+S ER+ + + ++ G
Sbjct: 318 DAEIASGEKHSAKLAEVKPEIERCVNK---LKAFEDSTGLSIERIKDINRRMSIGEAKAR 374
Query: 296 -CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +
Sbjct: 375 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 434
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A AR I+IPV +
Sbjct: 435 WIRQAITRSIADQARTIRIPVHMI 458
>gi|392542214|ref|ZP_10289351.1| RNA polymerase sigma factor [Pseudoalteromonas piscicida JCM 20779]
Length = 616
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 89/144 (61%), Gaps = 10/144 (6%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS-ERV--LKQHLAFGWY--- 295
+AE++ G + A L +K +E+ K L + + G+S ER+ + + ++ G
Sbjct: 318 DAEIASGEKHSAKLAEVKPEIERCVNK---LKAFEDSTGLSIERIKDINRRMSIGEAKAR 374
Query: 296 -CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +
Sbjct: 375 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 434
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A AR I+IPV +
Sbjct: 435 WIRQAITRSIADQARTIRIPVHMI 458
>gi|367468373|ref|ZP_09468244.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
gi|365816548|gb|EHN11575.1| RNA polymerase sigma factor RpoD [Patulibacter sp. I11]
Length = 367
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
K+ GK L A+ +++R+ + L ++++++S LV+ +A+NYR G+PF
Sbjct: 104 KDIGKVRLLTA-AEEVDLAKRIERGDLD----AKQKMVESNLRLVVSIAKNYRNQGLPFL 158
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q G +G+++ AE+FD+ +G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 159 DLIQEGTLGLVRAAEKFDYRKGFKFSTYATWWIRQAIARALADKARTIRIPV 210
>gi|296121158|ref|YP_003628936.1| sigma-70 family RNA polymerase sigma factor [Planctomyces
limnophilus DSM 3776]
gi|296013498|gb|ADG66737.1| RNA polymerase sigma factor, sigma-70 family [Planctomyces
limnophilus DSM 3776]
Length = 577
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 67/97 (69%), Gaps = 5/97 (5%)
Query: 284 RVLKQHLAFGWYCR--EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
RVL++ FG + R ++L LV+ +A+ YR G+ F DL+Q GN G+++G E+++
Sbjct: 287 RVLEK---FGGWTRSKQQLSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNAGLMRGVEKYE 343
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
RGYKFSTY +WIR++I++ VA HAR I+IPV +F
Sbjct: 344 FRRGYKFSTYATWWIRQAITRAVADHARTIRIPVHMF 380
>gi|186681941|ref|YP_001865137.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186464393|gb|ACC80194.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 339
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 80/138 (57%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E ++ VQ++ NL K L + +L WA + VL+ L+ G ++++
Sbjct: 49 QEVIFAQQVQLMMNLLAAKEELAVKLDHEPTLQEWADRVELGAEVLELQLSQGHQAKQKM 108
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
I++ LV+ +A+ Y+ + F DL+Q G +G+ +G ++FD GYKFSTY +WIR+ I
Sbjct: 109 IQANLRLVVAVAKKYQHRNLEFMDLIQEGTLGLERGVDKFDPALGYKFSTYAYWWIRQGI 168
Query: 361 SKMVARHARGIKIPVPLF 378
++ +A+ R I++P+ +F
Sbjct: 169 TRAIAQQGRTIRLPIHVF 186
>gi|428220179|ref|YP_007104349.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
gi|427993519|gb|AFY72214.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechococcus sp. PCC 7502]
Length = 334
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 98/178 (55%), Gaps = 11/178 (6%)
Query: 208 LPSEALQEGLKQPT-----IFSAERA---LNSRGRRLTIARNEAEMSKGVQVVANLERIK 259
+P + L + +K P SA+ L+ G+ + + NE E+ G QV + I
Sbjct: 1 MPKQKLTQSIKSPAKAKQGTLSADMVRTYLHEIGK-IPLLTNEEEIIYGKQVQHLMGYIT 59
Query: 260 T--TLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRG 317
T TL ++ + + WAQA G+ L L G + ++I++ LV+ +A+ Y+
Sbjct: 60 TQETLSEQFDRLPTQEEWAQAVGLEPNALNDALKQGTRAKRKMIEANLRLVVSVAKKYQK 119
Query: 318 LGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+ DL+Q G +G+ + ++FD T+G+KFSTY +WIR++I++ +A+ AR I++PV
Sbjct: 120 RNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPV 177
>gi|376254497|ref|YP_005142956.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae PW8]
gi|372117581|gb|AEX70051.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae PW8]
Length = 517
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 277 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 336
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 337 TWWIRQAITRAMADQARTIRIPVHMVEV 364
>gi|268610742|ref|ZP_06144469.1| RNA polymerase sigma factor RpoD [Ruminococcus flavefaciens FD-1]
Length = 360
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 84/138 (60%), Gaps = 8/138 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREE 299
++ EM+ + +A + +K L KE G+ L + L Q +A G Y ++
Sbjct: 74 DDLEMALSTEGIAIDDPVKIYL-KEIGRVPLLTTEEEIE------LAQRMAKGDRYAKKR 126
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++
Sbjct: 127 LSEANLRLVVSIAKKYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQA 186
Query: 360 ISKMVARHARGIKIPVPL 377
I++ +A AR I+IPV +
Sbjct: 187 ITRAIADQARTIRIPVHM 204
>gi|22297808|ref|NP_681055.1| RNA polymerase sigma factor SigD [Thermosynechococcus elongatus
BP-1]
gi|22293985|dbj|BAC07817.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus
BP-1]
Length = 315
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 77/129 (59%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ +A + I+ L E + + WA AA +SE L+ + G + +++++
Sbjct: 31 KQVQQLAAMNEIREKLAAELNREPTRAEWAAAANISEGELETIIENGERAKRKMVEANLR 90
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I++ +A
Sbjct: 91 LVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAE 150
Query: 367 HARGIKIPV 375
R I++P+
Sbjct: 151 KGRTIRLPI 159
>gi|313892356|ref|ZP_07825948.1| RNA polymerase sigma factor RpoD [Dialister microaerophilus UPII
345-E]
gi|313119215|gb|EFR42415.1| RNA polymerase sigma factor RpoD [Dialister microaerophilus UPII
345-E]
Length = 393
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 60/82 (73%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E+ + LV+ +A+ Y G G+PF DL+Q GN+G+L+ ++FD+ +GYKFSTY +W
Sbjct: 160 AKKEMANANLRLVVSIAKKYPGRGMPFLDLIQEGNIGLLKAVDKFDYKKGYKFSTYATWW 219
Query: 356 IRKSISKMVARHARGIKIPVPL 377
IR++I++ +A AR I++PV +
Sbjct: 220 IRQAITRSIADQARTIRVPVHM 241
>gi|56416704|ref|YP_153778.1| RNA polymerase sigma factor [Anaplasma marginale str. St. Maries]
gi|56387936|gb|AAV86523.1| RNA polymerase sigma factor [Anaplasma marginale str. St. Maries]
Length = 632
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 64/93 (68%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 385 IQKHERTANKAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 444
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
YKFSTY +W+R++I++ +A AR I+IPV +
Sbjct: 445 YKFSTYATWWVRQAITRAIADQARTIRIPVHMI 477
>gi|376287924|ref|YP_005160490.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae BH8]
gi|371585258|gb|AEX48923.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae BH8]
Length = 526
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 286 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 345
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 346 TWWIRQAITRAMADQARTIRIPVHMVEV 373
>gi|331003577|ref|ZP_08327074.1| hypothetical protein HMPREF0491_01936 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412418|gb|EGG91809.1| hypothetical protein HMPREF0491_01936 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 409
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 61/81 (75%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 171 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 230
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR+S+++ +A AR I++PV
Sbjct: 231 WIRQSVTRALADQARTIRVPV 251
>gi|296117756|ref|ZP_06836340.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
gi|295969487|gb|EFG82728.1| RNA polymerase sigma factor [Corynebacterium ammoniagenes DSM
20306]
Length = 471
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 231 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 290
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 291 TWWIRQAITRAMADQARTIRIPVHMVEV 318
>gi|443329722|ref|YP_007378793.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428682348|gb|AFZ61112.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 332
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + + K L ++ + + WA + E +L Q L+
Sbjct: 34 RIPLLTHEQEIFFAKQVQQMMVMLTAKEELSEKLQREPTRQEWADKMQLEEDMLLQQLSQ 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ I F DL+Q G +G+ +G E+FD T GYKFSTY
Sbjct: 94 GQIAKQKMIQANLRLVVSIAKKYQKRNIEFLDLIQEGALGLERGVEKFDPTLGYKFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A+ +R I++P+
Sbjct: 154 YWWIRQGITRAIAQQSRTIRLPI 176
>gi|329121328|ref|ZP_08249954.1| DNA-directed RNA polymerase sigma subunit RpoD [Dialister
micraerophilus DSM 19965]
gi|327469737|gb|EGF15203.1| DNA-directed RNA polymerase sigma subunit RpoD [Dialister
micraerophilus DSM 19965]
Length = 396
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 59/80 (73%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++E+ + LV+ +A+ Y G G+PF DL+Q GN+G+L+ ++FD+ +GYKFSTY +W
Sbjct: 163 AKKEMANANLRLVVSIAKKYPGRGMPFLDLIQEGNIGLLKAVDKFDYKKGYKFSTYATWW 222
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I++PV
Sbjct: 223 IRQAITRSIADQARTIRVPV 242
>gi|259046798|ref|ZP_05737199.1| RNA polymerase sigma-43 factor [Granulicatella adiacens ATCC 49175]
gi|259036566|gb|EEW37821.1| RNA polymerase sigma-43 factor [Granulicatella adiacens ATCC 49175]
Length = 374
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 60/80 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G+KFSTY +W
Sbjct: 136 AKQELAEANLRLVVSIAKRYVGRGMQFLDLIQEGNMGLMKTVEKFDHTKGFKFSTYATWW 195
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 196 IRQAITRAIADQARTIRIPV 215
>gi|257063660|ref|YP_003143332.1| RNA polymerase sigma factor RpoD [Slackia heliotrinireducens DSM
20476]
gi|256791313|gb|ACV21983.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Slackia
heliotrinireducens DSM 20476]
Length = 394
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 62/84 (73%)
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +++LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 152 VGLDAKDQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTY 211
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 212 ATWWIRQAITRAIADQARTIRIPV 235
>gi|406920079|gb|EKD58207.1| hypothetical protein ACD_57C00003G0002 [uncultured bacterium]
Length = 448
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 86/148 (58%), Gaps = 9/148 (6%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK--QHLAFG 293
L A+ E E+++ + R L KE G+ +L A G+ ++V+K + +
Sbjct: 145 LLTAKQEIELAQCAEAF-KFRRTDKRLAKELGRKPTLPEIAVEMGLDKKVIKAVEKTSKD 203
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD RG+K
Sbjct: 204 WNDKQGEAAERMLIQANLRLVVSIAKKYMGRGLTFLDLIQEGNIGLMRAVEKFDWRRGFK 263
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A +R I+IPV
Sbjct: 264 FSTYATWWIRQAITRALADQSRTIRIPV 291
>gi|404483026|ref|ZP_11018251.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
gi|404344116|gb|EJZ70475.1| RNA polymerase sigma factor RpoD [Clostridiales bacterium OBRC5-5]
Length = 410
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 61/81 (75%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 172 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 231
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR+S+++ +A AR I++PV
Sbjct: 232 WIRQSVTRALADQARTIRVPV 252
>gi|399526850|ref|ZP_10766593.1| RNA polymerase sigma factor RpoD [Actinomyces sp. ICM39]
gi|398362584|gb|EJN46270.1| RNA polymerase sigma factor RpoD [Actinomyces sp. ICM39]
Length = 541
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 301 GQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 360
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 361 TWWIRQAITRAMADQARTIRIPVHMVEV 388
>gi|310827637|ref|YP_003959994.1| RNA polymerase [Eubacterium limosum KIST612]
gi|308739371|gb|ADO37031.1| RNA polymerase [Eubacterium limosum KIST612]
Length = 395
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 73/112 (65%), Gaps = 5/112 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK L Q G+++R+ A ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 131 KEIGKVPLLTA-EQEMGIAKRME----AGDDEAKKELAEANLRLVVSIAKRYVGRGMSFL 185
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 186 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 237
>gi|302525743|ref|ZP_07278085.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
gi|302434638|gb|EFL06454.1| RNA polymerase sigma factor RpoS [Streptomyces sp. AA4]
Length = 476
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 66/97 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 227 RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 286
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 287 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 323
>gi|13195265|gb|AAK15630.1|AF326348_2 RNA polymerase major sigma subunit [Corynebacterium ammoniagenes]
Length = 467
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 35/167 (20%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV----LKQH--------LAFG- 293
K Q+ A+ + ++ L K+ GK A LN Q ++ER+ QH +A G
Sbjct: 150 KDAQLTASADSVRAYL-KQIGKVALLNA-EQEVSLAERIEAGLYAQHRLDEMERLIAEGD 207
Query: 294 --------------WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGV 333
W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+
Sbjct: 208 AAAKLSPAQKRDLRWIARDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGL 267
Query: 334 LQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 268 IRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 314
>gi|416411729|ref|ZP_11688760.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
gi|357260283|gb|EHJ09729.1| sigma-70 factor [Crocosphaera watsonii WH 0003]
Length = 442
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 68/101 (67%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ G+S R L+ L G +E++I++ LV+ +++ Y+G G+ F DL+ GN+G++
Sbjct: 58 WAKEIGISVRELQLILKRGKRAKEKMIQANLRLVVAVSKKYQGKGLEFMDLVSEGNLGLI 117
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+ E+F++ +GYKFSTY +WIR+++ + + R I++PV
Sbjct: 118 RAVEKFEYDKGYKFSTYAYHWIRQALVRAICDKGRTIRVPV 158
>gi|296393377|ref|YP_003658261.1| RpoD subfamily RNA polymerase sigma-70 factor [Segniliparus
rotundus DSM 44985]
gi|296180524|gb|ADG97430.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Segniliparus
rotundus DSM 44985]
Length = 377
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 97/189 (51%), Gaps = 18/189 (9%)
Query: 194 ARVSEESIETSLLSLPSEALQEG---LKQPTIFSAERALNSRGRR-LTIARNEAEMSKGV 249
A VS+E ET + PS EG + P LN GR L A +E E++K +
Sbjct: 48 AAVSDEEPETQDAA-PSGRYAEGDLDTQSPAADLVRVYLNGIGRTALLTAADEVELAKSI 106
Query: 250 QVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVL 309
+ E + T S N Q R LK G R L+++ LV+
Sbjct: 107 EAGLYAEHLLKT---------SDNLTPQ----RRRELKTVARDGQAARTHLLEANLRLVV 153
Query: 310 FLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHAR 369
LA+ Y G GIP DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ VA +R
Sbjct: 154 SLAKRYTGRGIPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYATWWIRQAITRGVADQSR 213
Query: 370 GIKIPVPLF 378
I++PV L
Sbjct: 214 TIRLPVHLV 222
>gi|402312660|ref|ZP_10831584.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
gi|400369118|gb|EJP22121.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium ICM7]
Length = 410
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 61/81 (75%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 172 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 231
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR+S+++ +A AR I++PV
Sbjct: 232 WIRQSVTRALADQARTIRVPV 252
>gi|423350088|ref|ZP_17327741.1| RNA polymerase sigma factor rpoD [Turicella otitidis ATCC 51513]
gi|404387950|gb|EJZ83041.1| RNA polymerase sigma factor rpoD [Turicella otitidis ATCC 51513]
Length = 573
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 333 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 392
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 393 TWWIRQAITRAMADQARTIRIPVHMVEV 420
>gi|373468298|ref|ZP_09559555.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371766389|gb|EHO54644.1| RNA polymerase sigma factor RpoD [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 410
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 61/81 (75%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+G+K STY +
Sbjct: 172 YAKQRLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGFKLSTYATW 231
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR+S+++ +A AR I++PV
Sbjct: 232 WIRQSVTRALADQARTIRVPV 252
>gi|254526733|ref|ZP_05138785.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
gi|221538157|gb|EEE40610.1| type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9202]
Length = 333
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ +ER + L + +G S++ + +S ++K+ L
Sbjct: 35 RVPLLSHEQEITLGRQVQEYMEVERAELELIELAGDKPSIDELSTKLNLSTSIIKKRLRA 94
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD RGYKFSTY
Sbjct: 95 GQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYA 154
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 155 YWWIRQGITRAIAEKSRAIRLPI 177
>gi|186680839|ref|YP_001864035.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186463291|gb|ACC79092.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 378
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 83/140 (59%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY 295
L A E E+++ V+ + + ++ L + G+ + A ++E+ L+ L G
Sbjct: 80 LLKADEEVELARRVRFLEEIRELQAALNLKLGQEPTKLEIASELEMTEKQLESRLYQGRV 139
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+ ++I+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +W
Sbjct: 140 AKRKMIRSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWW 199
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I++P+
Sbjct: 200 IRQAITRAIANDARTIRLPI 219
>gi|330466466|ref|YP_004404209.1| RNA polymerase sigma factor SigB [Verrucosispora maris AB-18-032]
gi|328809437|gb|AEB43609.1| RNA polymerase sigma factor SigB [Verrucosispora maris AB-18-032]
Length = 335
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 16/152 (10%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGK-AASLNCWAQAAGVSERVL 286
LN GR +L A E E++K ++ E TT S + A L AQ
Sbjct: 43 LNGIGRTKLLTAAQEVELAKRIEAGLFAEEKLTTCTPVSAQLQADLTLIAQE-------- 94
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
G + L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GY
Sbjct: 95 ------GQAAKNHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGY 148
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
KFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 149 KFSTYATWWIRQAITRAMADQARTIRIPVHMV 180
>gi|395236968|ref|ZP_10415097.1| RNA polymerase sigma factor rpoD [Turicella otitidis ATCC 51513]
gi|394487840|emb|CCI83185.1| RNA polymerase sigma factor rpoD [Turicella otitidis ATCC 51513]
Length = 429
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 189 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 248
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 249 TWWIRQAITRAMADQARTIRIPVHMVEV 276
>gi|407647061|ref|YP_006810820.1| RNA polymerase sigma factor [Nocardia brasiliensis ATCC 700358]
gi|407309945|gb|AFU03846.1| RNA polymerase sigma factor [Nocardia brasiliensis ATCC 700358]
Length = 457
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 64/95 (67%), Gaps = 6/95 (6%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+ W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 210 YNWIVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 269
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
YKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 270 YKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 304
>gi|443474760|ref|ZP_21064729.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
gi|443020446|gb|ELS34403.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudanabaena
biceps PCC 7429]
Length = 336
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 97/179 (54%), Gaps = 18/179 (10%)
Query: 214 QEGLKQPTIFSAERALNSR---------------GRRLTIARNEAEM--SKGVQVVANLE 256
+E L QPT + +R N + G+ + + NE E+ K VQ + L
Sbjct: 3 EEPLTQPTPKTVDRQANKQVGLSADMVRTYLHEIGK-IPLLSNEEEIVYGKQVQQMMLLF 61
Query: 257 RIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYR 316
++ + S + + WA+A G+ +L ++ G + ++I++ LV+ +A+ Y+
Sbjct: 62 EVQEKIAHNSDRLPTEQEWAEAVGLEPEILHSNIRIGTRAKRKMIEANLRLVVSVAKKYQ 121
Query: 317 GLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+ DL+Q G +G+ + ++FD T+G+KFSTY +WIR++I++ +A+ AR I++PV
Sbjct: 122 KRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRAIAQQARTIRLPV 180
>gi|374989227|ref|YP_004964722.1| RNA polymerase principal sigma factor hrdD [Streptomyces
bingchenggensis BCW-1]
gi|297159879|gb|ADI09591.1| RNA polymerase principal sigma factor hrdD [Streptomyces
bingchenggensis BCW-1]
Length = 333
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 67/103 (65%)
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
A AAG S L+ A G ++ I+S LV+ +AR Y G+P DL+Q GN G+++
Sbjct: 77 APAAGASRGELEAIAAEGARAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVR 136
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
E+FD+T+G+KFSTY +WIR++I++ +A +R I++PV L
Sbjct: 137 AVEKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLV 179
>gi|323484891|ref|ZP_08090246.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14163]
gi|323693741|ref|ZP_08107938.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14673]
gi|355624161|ref|ZP_09047550.1| hypothetical protein HMPREF1020_01629 [Clostridium sp. 7_3_54FAA]
gi|323401772|gb|EGA94115.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14163]
gi|323502192|gb|EGB18057.1| RNA polymerase sigma factor [Clostridium symbiosum WAL-14673]
gi|354822100|gb|EHF06474.1| hypothetical protein HMPREF1020_01629 [Clostridium sp. 7_3_54FAA]
Length = 374
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 60/80 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 138 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 197
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+S+++ +A AR I++PV
Sbjct: 198 IRQSVTRALADQARTIRVPV 217
>gi|385800010|ref|YP_005836414.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halanaerobium
praevalens DSM 2228]
gi|309389374|gb|ADO77254.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halanaerobium
praevalens DSM 2228]
Length = 310
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 59/80 (73%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
RE+L ++ LV+ +A+ Y G G+ F DL+Q GN G+++ E+FD+T+GYKFSTY +W
Sbjct: 70 AREQLTEANLRLVVSIAKKYIGQGMSFLDLIQEGNKGLMKAVEKFDYTKGYKFSTYATWW 129
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+SI++ +A AR I+IPV
Sbjct: 130 IRQSITRALADQARTIRIPV 149
>gi|239616750|ref|YP_002940072.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Kosmotoga olearia
TBF 19.5.1]
gi|239505581|gb|ACR79068.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Kosmotoga olearia
TBF 19.5.1]
Length = 405
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 58/80 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
REELI + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +GYKFSTY +W
Sbjct: 160 AREELITANLRLVVSIAKRYIGRGLSFLDLIQEGNIGLIKAVEKFDWKKGYKFSTYATWW 219
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I++PV
Sbjct: 220 IRQAITRAIADQARTIRVPV 239
>gi|283795510|ref|ZP_06344663.1| RNA polymerase sigma factor RpoD [Clostridium sp. M62/1]
gi|291077175|gb|EFE14539.1| RNA polymerase sigma factor RpoD [Clostridium sp. M62/1]
Length = 377
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 60/80 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 141 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 200
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+S+++ +A AR I++PV
Sbjct: 201 IRQSVTRALADQARTIRVPV 220
>gi|340794544|ref|YP_004760007.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702]
gi|340534454|gb|AEK36934.1| RNA polymerase sigma factor A [Corynebacterium variabile DSM 44702]
Length = 536
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 74/117 (63%), Gaps = 8/117 (6%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KESG+ S + +R L++ G + L+++ LV+ LA+ Y G G+ F
Sbjct: 275 KESGEKVS--------PMQKRDLREIDRDGRKAKNHLLEANLRLVVSLAKRYTGRGMAFL 326
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 327 DLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 383
>gi|302386858|ref|YP_003822680.1| RpoD subfamily RNA polymerase sigma-70 subunit [Clostridium
saccharolyticum WM1]
gi|302197486|gb|ADL05057.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Clostridium
saccharolyticum WM1]
Length = 380
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 70/112 (62%), Gaps = 5/112 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G LN + R+ K+ +E LI++ LV+ +A+ Y G G+ F
Sbjct: 117 KEIGTVPLLNAEEEL-----RLAKRKADGDDDAKERLIEANLRLVVSIAKRYTGRGMSFL 171
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q GN+G+++G E+FD+T+GYK STY +WIR+S+++ +A AR I++PV
Sbjct: 172 DLVQEGNLGLIKGVEKFDYTKGYKLSTYATWWIRQSVTRALADQARTIRVPV 223
>gi|225388546|ref|ZP_03758270.1| hypothetical protein CLOSTASPAR_02282 [Clostridium asparagiforme
DSM 15981]
gi|225045391|gb|EEG55637.1| hypothetical protein CLOSTASPAR_02282 [Clostridium asparagiforme
DSM 15981]
Length = 381
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 60/80 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 145 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 204
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+S+++ +A AR I++PV
Sbjct: 205 IRQSVTRALADQARTIRVPV 224
>gi|358064323|ref|ZP_09150899.1| hypothetical protein HMPREF9473_02962 [Clostridium hathewayi
WAL-18680]
gi|356697448|gb|EHI59031.1| hypothetical protein HMPREF9473_02962 [Clostridium hathewayi
WAL-18680]
Length = 376
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 60/80 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 140 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 199
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+S+++ +A AR I++PV
Sbjct: 200 IRQSVTRALADQARTIRVPV 219
>gi|158337702|ref|YP_001518878.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
gi|158307943|gb|ABW29560.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 81/143 (56%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R + +E E+ K VQ L+ +K L++ + + WA A +S L++ L
Sbjct: 20 RFPLLNHEEEIIFGKQVQRFVALQDLKQDLQEHLDREPTQAEWADKAEISVSQLQKELKL 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++S LV+ +A+ Y + F DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GHKANRKMVESNLRLVVSIAKKYNKAKVEFLDLIQEGTIGLQRGVEKFDPMKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+++++ +A R I++P+
Sbjct: 140 YWWIRQAMTRAIAEQERTIRLPI 162
>gi|424780578|ref|ZP_18207451.1| RNA polymerase sigma factor RpoD [Catellicoccus marimammalium
M35/04/3]
gi|422842980|gb|EKU27427.1| RNA polymerase sigma factor RpoD [Catellicoccus marimammalium
M35/04/3]
Length = 370
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 72/113 (63%), Gaps = 7/113 (6%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPF 322
KE G+ LN E+ L + +A G ++ L ++ LV+ +A+ Y G G+ F
Sbjct: 106 KEIGRVPLLNAE------EEKALAERIAAGDQEAKQRLAEANLRLVVSIAKRYVGRGMHF 159
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 160 LDLIQEGNMGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 212
>gi|299472557|emb|CBN79859.1| chloroplast RNA-polymerase sigma factor precursor [Ectocarpus
siliculosus]
Length = 835
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 77/134 (57%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E + + +Q LER++ LE G A S WA +++ L + LA +E +I
Sbjct: 246 EVVLGRQIQRGLQLERVRDRLETTHGAAPSCEEWASTLHLTKDELLRELAVADEAKEHMI 305
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+ LV+ +AR YRG G+ F DL+Q G +G+++ E+F+ G++F TY ++WI+KSI
Sbjct: 306 SANLRLVVSMARGYRGRGLAFPDLIQEGTMGLVKACEKFNPEMGFQFYTYARWWIKKSIL 365
Query: 362 KMVARHARGIKIPV 375
+A +R I++P
Sbjct: 366 TGIANQSRVIRLPT 379
>gi|38233991|ref|NP_939758.1| RNA polymerase sigma factor [Corynebacterium diphtheriae NCTC
13129]
gi|38200253|emb|CAE49937.1| RNA polymerase sigma factor [Corynebacterium diphtheriae]
Length = 502
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 262 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 321
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 322 TWWIRQAITRAMADQARTIRIPVHMVEV 349
>gi|392546486|ref|ZP_10293623.1| RNA polymerase sigma factor [Pseudoalteromonas rubra ATCC 29570]
Length = 614
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 90/144 (62%), Gaps = 10/144 (6%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS-ERV--LKQHLAFGWY--- 295
+AE++ G + A L ++K +E+ K L ++ G+S ER+ + + ++ G
Sbjct: 316 DAEIAAGDKHSAKLAQVKPEIERCVNK---LTAIEESTGLSIERIKDINRRMSIGEAKAR 372
Query: 296 -CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +
Sbjct: 373 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 432
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A AR I+IPV +
Sbjct: 433 WIRQAITRSIADQARTIRIPVHMI 456
>gi|222475070|ref|YP_002563485.1| RNA polymerase sigma factor [Anaplasma marginale str. Florida]
gi|255003048|ref|ZP_05278012.1| RNA polymerase sigma factor (rpoD) [Anaplasma marginale str. Puerto
Rico]
gi|255004170|ref|ZP_05278971.1| RNA polymerase sigma factor (rpoD) [Anaplasma marginale str.
Virginia]
gi|222419206|gb|ACM49229.1| RNA polymerase sigma factor (rpoD) [Anaplasma marginale str.
Florida]
Length = 646
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 64/93 (68%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 399 IQKHERTANKAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 458
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
YKFSTY +W+R++I++ +A AR I+IPV +
Sbjct: 459 YKFSTYATWWVRQAITRAIADQARTIRIPVHMI 491
>gi|404258479|ref|ZP_10961798.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
gi|403402993|dbj|GAC00208.1| RNA polymerase sigma factor SigA [Gordonia namibiensis NBRC 108229]
Length = 475
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 92/161 (57%), Gaps = 29/161 (18%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGV--SERVLKQHLAFG---- 293
K ++ A+ + ++ L K+ GK A LN + AG+ +ER L++ +A G
Sbjct: 164 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLFATER-LRRMMASGEKIS 221
Query: 294 --------WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+
Sbjct: 222 TAQKRDLNWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEK 281
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 282 FDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 322
>gi|427709357|ref|YP_007051734.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nostoc sp. PCC
7107]
gi|427361862|gb|AFY44584.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nostoc sp. PCC
7107]
Length = 332
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQVVAN--LERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV + L+ ++ +L + G+ +L WA+ + + L +A
Sbjct: 34 RVPLLTHEEEIRYGKQVQRSTALQEVRESLASQLGREPTLEEWAKESKLDIADLNDAIAD 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 94 GEIAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 153
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I++P+
Sbjct: 154 YWWIRQAITRAIAEKARTIRLPI 176
>gi|409390110|ref|ZP_11241881.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
gi|403199937|dbj|GAB85115.1| RNA polymerase sigma factor SigA [Gordonia rubripertincta NBRC
101908]
Length = 515
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 275 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 334
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 335 TWWIRQAITRAMADQARTIRIPVHMVEV 362
>gi|337290926|ref|YP_004629947.1| RNA polymerase sigma factor A [Corynebacterium ulcerans BR-AD22]
gi|397654185|ref|YP_006494868.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
gi|334699232|gb|AEG84028.1| RNA polymerase sigma factor A [Corynebacterium ulcerans BR-AD22]
gi|393403141|dbj|BAM27633.1| RNA polymerase sigma factor [Corynebacterium ulcerans 0102]
Length = 533
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 293 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 352
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 353 TWWIRQAITRAMADQARTIRIPVHMVEV 380
>gi|376248695|ref|YP_005140639.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC04]
gi|376257308|ref|YP_005145199.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae VA01]
gi|372115263|gb|AEX81321.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae HC04]
gi|372119825|gb|AEX83559.1| RNA polymerase sigma factor A [Corynebacterium diphtheriae VA01]
Length = 506
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 266 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 325
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 326 TWWIRQAITRAMADQARTIRIPVHMVEV 353
>gi|343924630|ref|ZP_08764174.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
gi|343765430|dbj|GAA11100.1| RNA polymerase sigma factor SigA [Gordonia alkanivorans NBRC 16433]
Length = 470
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 230 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 289
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 290 TWWIRQAITRAMADQARTIRIPVHMVEV 317
>gi|281412780|ref|YP_003346859.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
gi|281373883|gb|ADA67445.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
naphthophila RKU-10]
Length = 407
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 58/80 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 163 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 222
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 223 IRQAITRAIADQARTIRIPV 242
>gi|269798255|ref|YP_003312155.1| RpoD subfamily RNA polymerase sigma-70 subunit [Veillonella parvula
DSM 2008]
gi|282850493|ref|ZP_06259872.1| RNA polymerase sigma factor RpoD [Veillonella parvula ATCC 17745]
gi|294792116|ref|ZP_06757264.1| RNA polymerase sigma factor RpoD [Veillonella sp. 6_1_27]
gi|294793987|ref|ZP_06759124.1| RNA polymerase sigma factor RpoD [Veillonella sp. 3_1_44]
gi|269094884|gb|ACZ24875.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Veillonella
parvula DSM 2008]
gi|282579986|gb|EFB85390.1| RNA polymerase sigma factor RpoD [Veillonella parvula ATCC 17745]
gi|294455557|gb|EFG23929.1| RNA polymerase sigma factor RpoD [Veillonella sp. 3_1_44]
gi|294457346|gb|EFG25708.1| RNA polymerase sigma factor RpoD [Veillonella sp. 6_1_27]
Length = 386
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 66/100 (66%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + +++L+ + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 133 AGAQEDATYKDIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 192
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 193 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMV 232
>gi|384515838|ref|YP_005710930.1| RNA polymerase sigma factor A [Corynebacterium ulcerans 809]
gi|334697039|gb|AEG81836.1| RNA polymerase sigma factor A [Corynebacterium ulcerans 809]
Length = 533
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 293 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 352
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 353 TWWIRQAITRAMADQARTIRIPVHMVEV 380
>gi|213964575|ref|ZP_03392775.1| RNA polymerase sigma factor A [Corynebacterium amycolatum SK46]
gi|213952768|gb|EEB64150.1| RNA polymerase sigma factor A [Corynebacterium amycolatum SK46]
Length = 520
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 74/116 (63%), Gaps = 5/116 (4%)
Query: 265 ESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSD 324
E+ +A +AQ +R L++ G + L+++ LV+ LA+ Y G G+ F D
Sbjct: 257 EAKQAGERIAYAQ-----KRDLREISRDGQRAKNHLLEANLRLVVSLAKRYTGRGMAFLD 311
Query: 325 LLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
L+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 312 LIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 367
>gi|224534471|ref|ZP_03675047.1| RNA polymerase sigma factor RpoD [Borrelia spielmanii A14S]
gi|224514148|gb|EEF84466.1| RNA polymerase sigma factor RpoD [Borrelia spielmanii A14S]
Length = 631
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|167750934|ref|ZP_02423061.1| hypothetical protein EUBSIR_01919 [Eubacterium siraeum DSM 15702]
gi|167656113|gb|EDS00243.1| RNA polymerase sigma factor RpoD [Eubacterium siraeum DSM 15702]
gi|291557421|emb|CBL34538.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Eubacterium siraeum
V10Sc8a]
Length = 358
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 60/81 (74%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y R+ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +
Sbjct: 120 YARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATW 179
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR++I++ +A AR I+IPV
Sbjct: 180 WIRQAITRSIADQARTIRIPV 200
>gi|386854112|ref|YP_006203397.1| RNA polymerase sigma factor RpoD [Borrelia garinii BgVir]
gi|365194146|gb|AEW69044.1| RpoD [Borrelia garinii BgVir]
Length = 631
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|408500874|ref|YP_006864793.1| RNA polymerase sigma factor [Bifidobacterium asteroides PRL2011]
gi|408465698|gb|AFU71227.1| RNA polymerase sigma factor [Bifidobacterium asteroides PRL2011]
Length = 474
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 66/97 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK G ++ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 224 RELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 283
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+GYKFSTY +WIR++I++ +A AR I++PV + +
Sbjct: 284 KGYKFSTYATWWIRQAITRAMADQARTIRVPVHMVEV 320
>gi|384247274|gb|EIE20761.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Coccomyxa subellipsoidea C-169]
Length = 329
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFGW 294
L A E +SK VQ + +E +T + G+ + WA G S ++ + G
Sbjct: 9 LLTAAEEKVLSKAVQRLIAMEAKQTEATQRLGRPITEREWAAECGQSSIHAFRKAVKVGQ 68
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
R ++KS LV +AR Y G+ F DLL G G+ +G E+FD RG+KFSTY +
Sbjct: 69 EARTRMMKSNERLVFHVARRYMNRGLDFQDLLAEGMSGLWRGVEKFDADRGFKFSTYAHW 128
Query: 355 WIRKSISKMVARHARGIKIPVPL 377
W+R++I++ ++ R +++PV L
Sbjct: 129 WVRQAITRAISEQGRVVRLPVHL 151
>gi|291531112|emb|CBK96697.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Eubacterium siraeum 70/3]
Length = 358
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 60/81 (74%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y R+ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +
Sbjct: 120 YARKRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATW 179
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR++I++ +A AR I+IPV
Sbjct: 180 WIRQAITRSIADQARTIRIPV 200
>gi|88607510|ref|YP_505167.1| RNA polymerase sigma factor RpoD [Anaplasma phagocytophilum HZ]
gi|88598573|gb|ABD44043.1| RNA polymerase sigma factor RpoD [Anaplasma phagocytophilum HZ]
Length = 627
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 64/93 (68%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 380 IQKHERTANRAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 439
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
YKFSTY +W+R++I++ +A AR I+IPV +
Sbjct: 440 YKFSTYATWWVRQAITRAIADQARTIRIPVHMI 472
>gi|37519772|ref|NP_923149.1| group 2 sigma 70-type sigma factor [Gloeobacter violaceus PCC 7421]
gi|35210763|dbj|BAC88144.1| group 2 sigma 70-type sigma factor [Gloeobacter violaceus PCC 7421]
Length = 356
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 66/94 (70%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R + Q G + + +L+++ LV+ +A+ Y G+PF DL+Q G++G+++ AE+F+H
Sbjct: 105 RAIAQGGPKGEWAKRKLVQANLRLVVSIAKKYLNRGVPFLDLIQEGSMGLIRAAEKFEHE 164
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
RGYKFSTY +WIR++I++ VA AR +++PV L
Sbjct: 165 RGYKFSTYAYWWIRQAITRAVASQARTVRLPVHL 198
>gi|403253616|ref|ZP_10919917.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
gi|418045507|ref|ZP_12683602.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|5030433|gb|AAC44889.2| sigma 70-type sigma factor SigA [Thermotoga maritima]
gi|351676392|gb|EHA59545.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Thermotoga
maritima MSB8]
gi|402811150|gb|EJX25638.1| RNA polymerase, sigma 70 subunit, RpoD subfamily protein
[Thermotoga sp. EMP]
Length = 407
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 58/80 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 163 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 222
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 223 IRQAITRAIADQARTIRIPV 242
>gi|410866165|ref|YP_006980776.1| RNA polymerase sigma factor [Propionibacterium acidipropionici ATCC
4875]
gi|410822806|gb|AFV89421.1| RNA polymerase sigma factor [Propionibacterium acidipropionici ATCC
4875]
Length = 462
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 27/188 (14%)
Query: 218 KQPTIFSAERALNSRGRRLTIARNEAEMSKGVQVV-ANLERIKTTLEKESGKAASLNCWA 276
KQ AE +S+G L + E + V V A + +K L K+ GK A LN A
Sbjct: 124 KQAAKDEAEINKDSQGFSLNDNDDTDEPEQQVMVAGATADPVKDYL-KQIGKVALLNA-A 181
Query: 277 QAAGVSERVL------------------KQHLAFGWYCRE------ELIKSTRPLVLFLA 312
Q +++R+ K H + W + L+++ LV+ LA
Sbjct: 182 QEVDLAKRIEAGLFAGEQLADPDAKVANKDHDDYEWIAEDGRAAKNHLLEANLRLVVSLA 241
Query: 313 RNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIK 372
+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +WI+++I++ +A AR I+
Sbjct: 242 KRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIKQAITRAMADQARTIR 301
Query: 373 IPVPLFLI 380
IPV + +
Sbjct: 302 IPVHMVEV 309
>gi|305681425|ref|ZP_07404232.1| RNA polymerase sigma factor RpoD [Corynebacterium matruchotii ATCC
14266]
gi|305659630|gb|EFM49130.1| RNA polymerase sigma factor RpoD [Corynebacterium matruchotii ATCC
14266]
Length = 608
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 368 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 427
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 428 TWWIRQAITRAMADQARTIRIPV 450
>gi|123969371|ref|YP_001010229.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. AS9601]
gi|123199481|gb|ABM71122.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. AS9601]
Length = 344
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKG--VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G VQ +ERI+ + + +G+ S++ + ++ +K+ L
Sbjct: 46 RVPLLSHEQEITLGRQVQEYMEVERIELEIIELTGEKPSIDELSAKLNLTTSTIKKRLRA 105
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD RGYKFSTY
Sbjct: 106 GQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYA 165
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 166 YWWIRQGITRAIAEKSRAIRLPI 188
>gi|331696864|ref|YP_004333103.1| RpoD subfamily RNA polymerase sigma-70 subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326951553|gb|AEA25250.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Pseudonocardia
dioxanivorans CB1190]
Length = 461
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 85/143 (59%), Gaps = 11/143 (7%)
Query: 239 ARNEAEMSKGVQV-VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCR 297
A E E++K ++ + ER++ +E SG+ S R L+ + G +
Sbjct: 176 AEEEVELAKRIEAGLYAAERLRRAIE--SGEKVSPQL--------RRDLRWIVRDGERAK 225
Query: 298 EELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIR 357
L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR
Sbjct: 226 NHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIR 285
Query: 358 KSISKMVARHARGIKIPVPLFLI 380
++I++ +A AR I+IPV + +
Sbjct: 286 QAITRAMADQARTIRIPVHMVEV 308
>gi|262202178|ref|YP_003273386.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
gi|262085525|gb|ACY21493.1| RNA polymerase sigma factor RpoD [Gordonia bronchialis DSM 43247]
Length = 489
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 249 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 308
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 309 TWWIRQAITRAMADQARTIRIPVHMVEV 336
>gi|441513656|ref|ZP_20995484.1| RNA polymerase sigma factor SigA [Gordonia amicalis NBRC 100051]
gi|441451602|dbj|GAC53445.1| RNA polymerase sigma factor SigA [Gordonia amicalis NBRC 100051]
Length = 472
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 232 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 291
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 292 TWWIRQAITRAMADQARTIRIPVHMVEV 319
>gi|51598964|ref|YP_073152.1| RNA polymerase sigma factor RpoD [Borrelia garinii PBi]
gi|51573535|gb|AAU07560.1| RNA polymerase sigma-70 factor [Borrelia garinii PBi]
Length = 631
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|408678775|ref|YP_006878602.1| RNA polymerase principal sigma factor HrdD [Streptomyces venezuelae
ATCC 10712]
gi|328883104|emb|CCA56343.1| RNA polymerase principal sigma factor HrdD [Streptomyces venezuelae
ATCC 10712]
Length = 333
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 67/103 (65%)
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
++AAG S L+ A G ++ IKS LV+ +AR Y G+P DL+Q GN G+++
Sbjct: 77 SEAAGASREELEALYAAGERAKDLFIKSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVR 136
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
E+FD+ +G+KFSTY +WIR++I++ +A +R I++PV L
Sbjct: 137 AVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLV 179
>gi|222100016|ref|YP_002534584.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
gi|221572406|gb|ACM23218.1| RNA polymerase sigma factor rpoD [Thermotoga neapolitana DSM 4359]
Length = 392
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 58/80 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 148 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 207
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 208 IRQAITRAIADQARTIRIPV 227
>gi|408671317|ref|YP_006871388.1| RNA polymerase sigma factor RpoD [Borrelia garinii NMJW1]
gi|407241139|gb|AFT84022.1| RNA polymerase sigma factor RpoD [Borrelia garinii NMJW1]
Length = 628
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 314 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 373
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 374 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 423
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 424 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 470
>gi|224531865|ref|ZP_03672497.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia valaisiana
VS116]
gi|224511330|gb|EEF81736.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia valaisiana
VS116]
Length = 631
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|442608717|ref|ZP_21023464.1| RNA polymerase sigma factor RpoD [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
gi|441750113|emb|CCQ09526.1| RNA polymerase sigma factor RpoD [Pseudoalteromonas luteoviolacea B
= ATCC 29581]
Length = 618
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 89/144 (61%), Gaps = 10/144 (6%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS-ERV--LKQHLAFGWY--- 295
+AE+S G + LE ++ +E+ K L ++ G++ ER+ + + ++ G
Sbjct: 320 DAEISAGEKYSEKLEEVRPEIERCINK---LKAIEESTGLTVERIKDINRRMSIGEAKAR 376
Query: 296 -CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +
Sbjct: 377 RAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 436
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A AR I+IPV +
Sbjct: 437 WIRQAITRSIADQARTIRIPVHMI 460
>gi|379715508|ref|YP_005303845.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 316]
gi|377654214|gb|AFB72563.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 316]
Length = 521
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 281 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 340
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 341 TWWIRQAITRAMADQARTIRIPVHMVEV 368
>gi|387140798|ref|YP_005696776.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1/06-A]
gi|355392589|gb|AER69254.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1/06-A]
Length = 517
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 277 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 336
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 337 TWWIRQAITRAMADQARTIRIPVHMVEV 364
>gi|427421683|ref|ZP_18911866.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
gi|425757560|gb|EKU98414.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Leptolyngbya sp. PCC 7375]
Length = 318
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L+ +T LE + S WA+AAG+S L Q +
Sbjct: 20 RVPLLTHEQEVVYGKQVQRFVALQAYRTKLEASLEREPSKLEWAEAAGISVDELTQAMDA 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + ++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD +GY+FSTY
Sbjct: 80 GDLAKRRMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPLKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I++P+
Sbjct: 140 YWWIRQAITRAIAEKSRTIRLPI 162
>gi|303229406|ref|ZP_07316196.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-134-V-Col7a]
gi|303230872|ref|ZP_07317619.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-049-V-Sch6]
gi|429760133|ref|ZP_19292623.1| RNA polymerase sigma factor RpoD [Veillonella atypica KON]
gi|302514632|gb|EFL56627.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-049-V-Sch6]
gi|302515942|gb|EFL57894.1| RNA polymerase sigma factor RpoD [Veillonella atypica
ACS-134-V-Col7a]
gi|429178538|gb|EKY19816.1| RNA polymerase sigma factor RpoD [Veillonella atypica KON]
Length = 388
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 65/97 (67%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + +++L+ + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 135 AGAEEDATYKEIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 194
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 195 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 231
>gi|300858628|ref|YP_003783611.1| RNA polymerase sigma factor A [Corynebacterium pseudotuberculosis
FRC41]
gi|375288806|ref|YP_005123347.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383314390|ref|YP_005375245.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis P54B96]
gi|384504811|ref|YP_005681481.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1002]
gi|384506905|ref|YP_005683574.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis C231]
gi|384508992|ref|YP_005685660.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis I19]
gi|384511084|ref|YP_005690662.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis PAT10]
gi|385807690|ref|YP_005844087.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 267]
gi|387136734|ref|YP_005692714.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 42/02-A]
gi|300686082|gb|ADK29004.1| RNA polymerase sigma factor A [Corynebacterium pseudotuberculosis
FRC41]
gi|302206337|gb|ADL10679.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis C231]
gi|302330894|gb|ADL21088.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 1002]
gi|308276579|gb|ADO26478.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis I19]
gi|341825023|gb|AEK92544.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis PAT10]
gi|348607179|gb|AEP70452.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 42/02-A]
gi|371576095|gb|AEX39698.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 3/99-5]
gi|380869891|gb|AFF22365.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis P54B96]
gi|383805083|gb|AFH52162.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 267]
Length = 517
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 277 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 336
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 337 TWWIRQAITRAMADQARTIRIPVHMVEV 364
>gi|148270473|ref|YP_001244933.1| RpoD family RNA polymerase sigma factor [Thermotoga petrophila
RKU-1]
gi|170289132|ref|YP_001739370.1| RpoD family RNA polymerase sigma factor [Thermotoga sp. RQ2]
gi|147736017|gb|ABQ47357.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga
petrophila RKU-1]
gi|170176635|gb|ACB09687.1| RNA polymerase, sigma 70 subunit, RpoD family [Thermotoga sp. RQ2]
Length = 407
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 58/80 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 163 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 222
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 223 IRQAITRAIADQARTIRIPV 242
>gi|441518669|ref|ZP_21000384.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441454483|dbj|GAC58345.1| RNA polymerase sigma factor SigA [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 489
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 89/160 (55%), Gaps = 27/160 (16%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGV--SERV-----------L 286
K ++ A+ + ++ L K+ GK A LN + AG+ +ER+ +
Sbjct: 178 KDAELTASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLFATERLRRVMEAGEKLSV 236
Query: 287 KQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
Q W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+F
Sbjct: 237 AQRRDLNWISRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKF 296
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
D+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 297 DYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 336
>gi|396584996|ref|ZP_10485432.1| RNA polymerase sigma factor RpoD [Actinomyces sp. ICM47]
gi|395547309|gb|EJG14781.1| RNA polymerase sigma factor RpoD [Actinomyces sp. ICM47]
Length = 491
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 251 GQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 310
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 311 TWWIRQAITRAMADQARTIRIPVHMVEV 338
>gi|254469018|ref|ZP_05082424.1| sigma 70 [beta proteobacterium KB13]
gi|207087828|gb|EDZ65111.1| sigma 70 [beta proteobacterium KB13]
Length = 658
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Query: 243 AEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW----YCRE 298
EM + +ANLE++K ++ + + L ++ + + + + + G +
Sbjct: 361 VEMKEDKPYIANLEKLKHSILDQQAQLKELEDFSGIPIKNFKEINRQMTRGESRARRAKR 420
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
E+I++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR+
Sbjct: 421 EMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 480
Query: 359 SISKMVARHARGIKIPVPLF 378
+I++ +A AR I+IPV +
Sbjct: 481 AITRSIADQARTIRIPVHMI 500
>gi|401679368|ref|ZP_10811299.1| RNA polymerase sigma factor RpoD [Veillonella sp. ACP1]
gi|400219589|gb|EJO50453.1| RNA polymerase sigma factor RpoD [Veillonella sp. ACP1]
Length = 388
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 65/97 (67%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + +++L+ + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 135 AGAEEDATYKEIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 194
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 195 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 231
>gi|973980|gb|AAB05357.1| RNA polymerase sigma factor, partial [Cyanidium caldarium]
Length = 609
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 254 NLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLAR 313
N RI+ L E GK WA+A +S L ++L RE L+ + LV+ +A+
Sbjct: 293 NATRIQ--LRHEYGKEPDRTEWAKALNMSAEELTRNLLRAQRARESLVAANLRLVVSVAK 350
Query: 314 NYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKI 373
+ G+ DL+Q G++G+++GAERFD+ G++FSTY +WIR+++ + +A +R I+I
Sbjct: 351 QFTNRGLSMQDLIQEGSIGLIKGAERFDYRTGFRFSTYAMWWIRQAMQRAIADTSRPIRI 410
Query: 374 P 374
P
Sbjct: 411 P 411
>gi|407983277|ref|ZP_11163934.1| RNA polymerase sigma factor RpoD [Mycobacterium hassiacum DSM
44199]
gi|407375170|gb|EKF24129.1| RNA polymerase sigma factor RpoD [Mycobacterium hassiacum DSM
44199]
Length = 527
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 71/111 (63%), Gaps = 7/111 (6%)
Query: 277 QAAGVSERVLKQ-HLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
QAA E++ Q + W R+ L+++ LV+ LA+ Y G G+ F DL+Q G
Sbjct: 264 QAAEKGEKLPTQLRRDYQWISRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEG 323
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
N+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 324 NLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 374
>gi|399525366|ref|ZP_10765810.1| RNA polymerase sigma factor RpoD [Atopobium sp. ICM58]
gi|398373259|gb|EJN51219.1| RNA polymerase sigma factor RpoD [Atopobium sp. ICM58]
Length = 488
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 75/120 (62%), Gaps = 5/120 (4%)
Query: 265 ESGKAASLNCWAQAAGVSERVLKQHLAF----GWYCREELIKSTRPLVLFLARNYRGLGI 320
E+G A QA ++ R ++ L F G + L+++ LV+ LA+ Y G G+
Sbjct: 217 EAGLYAEFKLKNQADEMTSRE-RRELHFLAQDGQQAKNHLLEANLRLVVSLAKRYTGRGM 275
Query: 321 PFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
F DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 276 QFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 335
>gi|377567668|ref|ZP_09796876.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
gi|377535208|dbj|GAB42041.1| RNA polymerase sigma factor SigA [Gordonia terrae NBRC 100016]
Length = 520
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 280 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 339
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 340 TWWIRQAITRAMADQARTIRIPVHMVEV 367
>gi|330040254|ref|XP_003239821.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
gi|327206746|gb|AEA38923.1| RNA-polymerase sigma factor [Cryptomonas paramecium]
Length = 414
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 86/145 (59%), Gaps = 1/145 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLAFG 293
+L E ++++ + + E IK L+++ G+ + W+ A +S+ + K L
Sbjct: 97 KLLKPEEEIQLAREISQLLQWEHIKVFLKEKLGREPTALEWSAACKISDVQKFKTVLYNS 156
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
+E +I + LV+ +A+ Y G+ DL+Q G++G+++ E+FD +G+KFSTY
Sbjct: 157 RKAKERMIAANLRLVVSIAKRYSNRGMSLQDLVQEGSLGLIRATEKFDSEKGFKFSTYAT 216
Query: 354 YWIRKSISKMVARHARGIKIPVPLF 378
+WI++S+S+ +A H+R I++PV L+
Sbjct: 217 WWIKQSVSRAIADHSRTIRLPVHLY 241
>gi|210633964|ref|ZP_03297935.1| hypothetical protein COLSTE_01853 [Collinsella stercoris DSM 13279]
gi|210159008|gb|EEA89979.1| RNA polymerase sigma factor RpoD [Collinsella stercoris DSM 13279]
Length = 445
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE------RVLKQHLAFGWYCREELIK 302
V ++ E + ++ E+G A+ Q AG E R L + G ++ LI
Sbjct: 153 VDLLTAAEEVDLAMKIEAGLDAADKLEKQEAGEIELTRAEMRRLMRVEQVGLDAKQALIS 212
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++
Sbjct: 213 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYEKGFKFSTYATWWIRQAITR 272
Query: 363 MVARHARGIKIPVPLF 378
+A AR I+IPV +
Sbjct: 273 AIADQARTIRIPVHMV 288
>gi|389850558|ref|YP_006352793.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 258]
gi|388247864|gb|AFK16855.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 258]
Length = 521
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 281 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 340
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 341 TWWIRQAITRAMADQARTIRIPVHMVEV 368
>gi|386740540|ref|YP_006213720.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 31]
gi|384477234|gb|AFH91030.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis 31]
Length = 517
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 277 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 336
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 337 TWWIRQAITRAMADQARTIRIPVHMVEV 364
>gi|386852049|ref|YP_006270062.1| RNA polymerase sigma factor rpoD [Actinoplanes sp. SE50/110]
gi|359839553|gb|AEV87994.1| RNA polymerase sigma factor rpoD [Actinoplanes sp. SE50/110]
Length = 528
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 66/98 (67%)
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
ER LK G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+
Sbjct: 278 ERDLKWINRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 337
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 338 TKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 375
>gi|304389369|ref|ZP_07371334.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
gi|304327487|gb|EFL94720.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. curtisii ATCC 35241]
Length = 564
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 324 GQMAKNHLLEANLRLVVALAKKYTGRGMLFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 383
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 384 TWWIRQAITRAMADQARTIRIPVHMVEV 411
>gi|269958878|ref|YP_003328667.1| RNA polymerase sigma factor [Anaplasma centrale str. Israel]
gi|269848709|gb|ACZ49353.1| RNA polymerase sigma factor [Anaplasma centrale str. Israel]
Length = 649
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 64/93 (68%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+++H ++E+IK+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++FD+ RG
Sbjct: 402 IQKHERTANKAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRG 461
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
YKFSTY +W+R++I++ +A AR I+IPV +
Sbjct: 462 YKFSTYATWWVRQAITRAIADQARTIRIPVHMI 494
>gi|219684458|ref|ZP_03539402.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia garinii PBr]
gi|219672447|gb|EED29500.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia garinii PBr]
Length = 631
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|315924365|ref|ZP_07920587.1| DNA-directed RNA polymerase sigma subunit RpoD [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622244|gb|EFV02203.1| DNA-directed RNA polymerase sigma subunit RpoD [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 396
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 72/112 (64%), Gaps = 5/112 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE G+ + L + A + K+ A ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 132 KEIGRVSLLTADEEMA-----IAKRMAAGDEDAKKELAEANLRLVVSIAKRYVGRGMSFL 186
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 187 DLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 238
>gi|283954552|ref|ZP_06372071.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 414]
gi|283793956|gb|EFC32706.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 414]
Length = 622
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|296139587|ref|YP_003646830.1| RpoD subfamily RNA polymerase sigma-70 subunit [Tsukamurella
paurometabola DSM 20162]
gi|296027721|gb|ADG78491.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Tsukamurella
paurometabola DSM 20162]
Length = 483
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 243 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 302
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 303 TWWIRQAITRAMADQARTIRIPVHMVEV 330
>gi|392400741|ref|YP_006437341.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis Cp162]
gi|390531819|gb|AFM07548.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis Cp162]
Length = 521
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 281 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 340
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 341 TWWIRQAITRAMADQARTIRIPVHMVEV 368
>gi|330466485|ref|YP_004404228.1| RNA polymerase sigma factor [Verrucosispora maris AB-18-032]
gi|328809456|gb|AEB43628.1| RNA polymerase sigma factor [Verrucosispora maris AB-18-032]
Length = 535
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 295 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 354
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 355 TWWIRQAITRAMADQARTIRIPVHMVEV 382
>gi|383831200|ref|ZP_09986289.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
gi|383463853|gb|EID55943.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
xinjiangensis XJ-54]
Length = 468
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 66/97 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 219 RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 278
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+G+KFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 279 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 315
>gi|154509177|ref|ZP_02044819.1| hypothetical protein ACTODO_01698 [Actinomyces odontolyticus ATCC
17982]
gi|153798811|gb|EDN81231.1| RNA polymerase sigma factor RpoD [Actinomyces odontolyticus ATCC
17982]
Length = 561
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 321 GQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 380
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 381 TWWIRQAITRAMADQARTIRIPVHMVEV 408
>gi|221195781|ref|ZP_03568834.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
gi|221184255|gb|EEE16649.1| RNA polymerase sigma factor RpoD [Atopobium rimae ATCC 49626]
Length = 455
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 61/84 (72%)
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +++LI + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 213 VGLDAKQQLISANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTY 272
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 273 ATWWIRQAITRAIADQARTIRIPV 296
>gi|444432019|ref|ZP_21227179.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
gi|443887193|dbj|GAC68900.1| RNA polymerase sigma factor SigA [Gordonia soli NBRC 108243]
Length = 479
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 239 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 298
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 299 TWWIRQAITRAMADQARTIRIPVHMVEV 326
>gi|300784507|ref|YP_003764798.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
U32]
gi|384147774|ref|YP_005530590.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|399536392|ref|YP_006549054.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|299794021|gb|ADJ44396.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
U32]
gi|340525928|gb|AEK41133.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
gi|398317162|gb|AFO76109.1| RNA polymerase primary sigma factor [Amycolatopsis mediterranei
S699]
Length = 467
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 66/97 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 218 RDLKWIVRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 277
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 278 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 314
>gi|159037077|ref|YP_001536330.1| RNA polymerase sigma factor [Salinispora arenicola CNS-205]
gi|157915912|gb|ABV97339.1| RNA polymerase, sigma 70 subunit, RpoD family [Salinispora
arenicola CNS-205]
Length = 532
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 292 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 351
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 352 TWWIRQAITRAMADQARTIRIPVHMVEV 379
>gi|324997280|ref|ZP_08118392.1| RNA polymerase sigma factor [Pseudonocardia sp. P1]
Length = 469
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 229 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 288
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 289 TWWIRQAITRAMADQARTIRIPVHMVEV 316
>gi|219685543|ref|ZP_03540360.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia garinii
Far04]
gi|219672942|gb|EED29964.1| RNA polymerase sigma factor RpoD (Sigma-70) [Borrelia garinii
Far04]
Length = 631
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 317 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 376
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
+ SE + K + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 377 M---------SEEIAKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 426
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 427 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 473
>gi|315656627|ref|ZP_07909514.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
gi|315492582|gb|EFU82186.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
subsp. holmesii ATCC 35242]
Length = 564
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 324 GQMAKNHLLEANLRLVVALAKKYTGRGMLFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 383
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 384 TWWIRQAITRAMADQARTIRIPVHMVEV 411
>gi|266625476|ref|ZP_06118411.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
gi|288862622|gb|EFC94920.1| RNA polymerase sigma factor RpoD [Clostridium hathewayi DSM 13479]
Length = 381
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 60/80 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++G E+FD+T+GYK STY +W
Sbjct: 145 AKERLIEANLRLVVSIAKRYTGRGMSFLDLVQEGNLGLIKGVEKFDYTKGYKLSTYATWW 204
Query: 356 IRKSISKMVARHARGIKIPV 375
IR+S+++ +A AR I++PV
Sbjct: 205 IRQSVTRALADQARTIRVPV 224
>gi|298346920|ref|YP_003719607.1| RNA polymerase sigma factor SigA [Mobiluncus curtisii ATCC 43063]
gi|298236981|gb|ADI68113.1| RNA polymerase sigma factor SigA [Mobiluncus curtisii ATCC 43063]
Length = 563
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 323 GQMAKNHLLEANLRLVVALAKKYTGRGMLFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 382
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 383 TWWIRQAITRAMADQARTIRIPVHMVEV 410
>gi|302866072|ref|YP_003834709.1| sigma-70 family RNA polymerase [Micromonospora aurantiaca ATCC
27029]
gi|315502628|ref|YP_004081515.1| RpoD subfamily RNA polymerase sigma-70 subunit [Micromonospora sp.
L5]
gi|302568931|gb|ADL45133.1| RNA polymerase sigma factor, sigma-70 family [Micromonospora
aurantiaca ATCC 27029]
gi|315409247|gb|ADU07364.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Micromonospora
sp. L5]
Length = 328
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 22/155 (14%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
LN GR +L A E E+SK RI+ L E A A+ L
Sbjct: 35 LNGIGRTKLLTAAQEVELSK---------RIEAGLFAEEKLATCTPVSAE--------LH 77
Query: 288 QHLAF----GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
LA G ++ L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 78 ADLALIAAEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 137
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+GYKFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 138 KGYKFSTYATWWIRQAITRAMADQARTIRIPVHMV 172
>gi|375101493|ref|ZP_09747756.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
gi|374662225|gb|EHR62103.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
cyanea NA-134]
Length = 474
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 66/97 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 225 RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 284
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+G+KFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 285 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 321
>gi|157414236|ref|YP_001485102.1| type II alternative sigma-70 family RNA polymerase sigma factor
[Prochlorococcus marinus str. MIT 9215]
gi|157388811|gb|ABV51516.1| Type II alternative RNA polymerase sigma factor, sigma-70 family
[Prochlorococcus marinus str. MIT 9215]
Length = 344
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLE--KESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E++ G QV +E + LE + +G S++ + +S ++K+ L
Sbjct: 46 RVPLLSHEQEITLGRQVQEYMEVERAELEFIELTGDKPSIDELSTKLNLSTSIIKKRLRA 105
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G +E ++ + LV+ +A+ Y + DL+Q G +G+++G E+FD RGYKFSTY
Sbjct: 106 GQRAKERMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYA 165
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+ I++ +A +R I++P+
Sbjct: 166 YWWIRQGITRAIAEKSRAIRLPI 188
>gi|377561650|ref|ZP_09791093.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
gi|377521212|dbj|GAB36258.1| RNA polymerase sigma factor SigA [Gordonia otitidis NBRC 100426]
Length = 486
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 246 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 305
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 306 TWWIRQAITRAMADQARTIRIPVHMVEV 333
>gi|15644200|ref|NP_229250.1| RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
gi|6831649|sp|P77994.3|RPOD_THEMA RecName: Full=RNA polymerase sigma factor RpoD; Short=Sigma-A
gi|4982015|gb|AAD36519.1|AE001796_11 RNA polymerase sigma-A factor [Thermotoga maritima MSB8]
Length = 399
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 58/80 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +W
Sbjct: 155 AKEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWW 214
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 215 IRQAITRAIADQARTIRIPV 234
>gi|54025729|ref|YP_119971.1| RNA polymerase sigma factor [Nocardia farcinica IFM 10152]
gi|54017237|dbj|BAD58607.1| putative principal sigma factor [Nocardia farcinica IFM 10152]
Length = 454
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 62/90 (68%), Gaps = 6/90 (6%)
Query: 292 FGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+ W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+G
Sbjct: 207 YNWIVRDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKG 266
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPV 375
YKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 267 YKFSTYATWWIRQAITRAMADQARTIRIPV 296
>gi|403251426|ref|ZP_10917767.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[actinobacterium SCGC AAA027-L06]
gi|402915254|gb|EJX36236.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[actinobacterium SCGC AAA027-L06]
Length = 531
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 65/92 (70%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R L+Q + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 282 RELQQIVLNGRRDKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 341
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 342 KGYKFSTYATWWIRQAITRAMADQARTIRIPV 373
>gi|408826954|ref|ZP_11211844.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
somaliensis DSM 40738]
Length = 328
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 67/102 (65%)
Query: 277 QAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
+A G + L++ A G +E I+S LV+ +AR Y G+P DL+Q GN G+++
Sbjct: 77 EAGGATREELERLAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRA 136
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
E+FD+T+G+KFSTY +WIR++I++ +A +R I++PV L
Sbjct: 137 VEKFDYTKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLV 178
>gi|153952229|ref|YP_001397920.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939675|gb|ABS44416.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
doylei 269.97]
Length = 622
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor RpoD [Synechocystis sp. PCC 6803]
gi|383323875|ref|YP_005384729.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|383327044|ref|YP_005387898.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|383492928|ref|YP_005410605.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|384438196|ref|YP_005652921.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|451816284|ref|YP_007452736.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|47717353|sp|P74565.1|RPOD_SYNY3 RecName: Full=RNA polymerase sigma factor RpoD
gi|1653761|dbj|BAA18672.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|339275229|dbj|BAK51716.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
gi|359273195|dbj|BAL30714.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
GT-I]
gi|359276365|dbj|BAL33883.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-N]
gi|359279535|dbj|BAL37052.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803 substr.
PCC-P]
gi|451782253|gb|AGF53222.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803]
Length = 425
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 70/106 (66%)
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
N W+Q + ++ L ++++++S LV+ +A+ Y G+ F DL+Q G++G
Sbjct: 166 NEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLG 225
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++PV L+
Sbjct: 226 LIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLY 271
>gi|409358547|ref|ZP_11236910.1| RNA polymerase sigma factor [Dietzia alimentaria 72]
Length = 462
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 35/169 (20%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNC-----------------WAQAAGV 281
AR +AE++ A+ + ++ L K+ GK A LN W A V
Sbjct: 149 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLYSTW-HMAQV 200
Query: 282 SERVLK----QHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
ER K Q F W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+
Sbjct: 201 VERGDKLTTAQRRDFRWIERDGVRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNL 260
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 261 GLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 309
>gi|75907421|ref|YP_321717.1| sigma 28 (flagella/sporulation) [Anabaena variabilis ATCC 29413]
gi|75701146|gb|ABA20822.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413]
Length = 378
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 81/134 (60%)
Query: 242 EAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELI 301
E E+++ V+ + + ++ L+ + G + A ++E+ L+ L G + ++I
Sbjct: 86 EVELARRVRFLEEVRDLQADLQLQLGLHPTKAQVAAQLEITEKQLENRLYQGRVAKRKMI 145
Query: 302 KSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSIS 361
+S LV+ +A+ Y G+PF DL+Q G +G+ + E+FD +GYKFSTY +WIR++I+
Sbjct: 146 RSNLRLVVSIAKRYLNRGVPFLDLIQEGAMGLNRATEKFDPDKGYKFSTYAYWWIRQAIT 205
Query: 362 KMVARHARGIKIPV 375
+ +A AR I++P+
Sbjct: 206 RAIANDARTIRLPI 219
>gi|225021265|ref|ZP_03710457.1| hypothetical protein CORMATOL_01277 [Corynebacterium matruchotii
ATCC 33806]
gi|224945998|gb|EEG27207.1| hypothetical protein CORMATOL_01277 [Corynebacterium matruchotii
ATCC 33806]
Length = 617
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 377 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 436
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 437 TWWIRQAITRAMADQARTIRIPV 459
>gi|119492598|ref|ZP_01623816.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
gi|119453067|gb|EAW34237.1| RNA polymerase sigma factor [Lyngbya sp. PCC 8106]
Length = 333
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQVVANLERI--KTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + E E+ G QV ++++ K L K+ S WA ++E L + L
Sbjct: 35 RVPLLTQEEEIHYGKQVQQMMKQLEEKDKLTKKLEHEPSKTEWANEVELTEDELDRILDC 94
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY
Sbjct: 95 GRRAKQKMIEANLRLVVSIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPMRGYKFSTYA 154
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+W+R++I++ +A++ R I++P+
Sbjct: 155 YWWVRQAITRAIAQNGRTIRLPI 177
>gi|387138806|ref|YP_005694785.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|349735284|gb|AEQ06762.1| RNA polymerase sigma factor rpoD [Corynebacterium
pseudotuberculosis CIP 52.97]
Length = 517
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 277 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 336
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 337 TWWIRQAITRAMADQARTIRIPV 359
>gi|317511465|ref|ZP_07968785.1| RNA polymerase sigma factor [Campylobacter jejuni subsp. jejuni
305]
gi|315929035|gb|EFV08275.1| RNA polymerase sigma factor [Campylobacter jejuni subsp. jejuni
305]
Length = 622
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|385682368|ref|ZP_10056296.1| RNA polymerase sigma factor [Amycolatopsis sp. ATCC 39116]
Length = 447
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 207 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 266
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 267 TWWIRQAITRAMADQARTIRIPVHMVEV 294
>gi|453363955|dbj|GAC80270.1| RNA polymerase sigma factor SigA [Gordonia malaquae NBRC 108250]
Length = 466
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 91/163 (55%), Gaps = 33/163 (20%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGV--SERV---- 285
AR +AE++ A+ + ++ L K+ GK A LN + AG+ +ER+
Sbjct: 153 ARKDAELT------ASADSVRAYL-KQIGKVALLNAEEEVELAKRIEAGLFSTERMRRIM 205
Query: 286 -------LKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
+ Q W R+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G
Sbjct: 206 ESGEKLTVAQRRDLSWIARDGNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLG 265
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 266 LIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 308
>gi|46580198|ref|YP_011006.1| RNA polymerase sigma-70 factor [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602415|ref|YP_966815.1| RpoD family RNA polymerase sigma factor [Desulfovibrio vulgaris
DP4]
gi|387153370|ref|YP_005702306.1| RpoD subfamily RNA polymerase sigma-70 subunit [Desulfovibrio
vulgaris RCH1]
gi|46449615|gb|AAS96265.1| RNA polymerase sigma-70 factor [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562644|gb|ABM28388.1| RNA polymerase, sigma 70 subunit, RpoD [Desulfovibrio vulgaris DP4]
gi|311233814|gb|ADP86668.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfovibrio
vulgaris RCH1]
Length = 590
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 64/93 (68%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
+K+ + ++ELI+S LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RG
Sbjct: 342 IKRGNSIAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRG 401
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
YKFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 402 YKFSTYATWWIRQAITRAIADQARTIRIPVHMI 434
>gi|365855968|ref|ZP_09395996.1| RNA polymerase sigma factor RpoD [Acetobacteraceae bacterium
AT-5844]
gi|363718536|gb|EHM01872.1| RNA polymerase sigma factor RpoD [Acetobacteraceae bacterium
AT-5844]
Length = 600
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 74/117 (63%), Gaps = 8/117 (6%)
Query: 260 TTLEKESGKAAS-LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGL 318
LE+E+G AA+ L A ER +++ +EEL+++ LV+ +A+ YR
Sbjct: 333 AALEQENGLAAARLRQVCDAVAQGERQMRR-------AKEELVQANLRLVVHIAKRYRNR 385
Query: 319 GIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
G+ F DL+Q GN+G+++ E+FD RG+KF TY +W+R++I++ +A +R I++PV
Sbjct: 386 GLMFGDLIQEGNIGLMRAVEKFDWRRGFKFGTYATWWVRQAITRSIADQSRTIRVPV 442
>gi|418747116|ref|ZP_13303426.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
CBC379]
gi|418752464|ref|ZP_13308725.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
MOR084]
gi|421110278|ref|ZP_15570779.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str. JET]
gi|409967194|gb|EKO35030.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
MOR084]
gi|410791910|gb|EKR89855.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
CBC379]
gi|410804463|gb|EKS10580.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str. JET]
gi|456876656|gb|EMF91735.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str. ST188]
Length = 586
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 299 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 351
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 352 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 411
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 412 ITRAISDQARTIRVPVHMI 430
>gi|315655467|ref|ZP_07908366.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
ATCC 51333]
gi|315490122|gb|EFU79748.1| DNA-directed RNA polymerase sigma subunit RpoD [Mobiluncus curtisii
ATCC 51333]
Length = 553
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 313 GQMAKNHLLEANLRLVVALAKKYTGRGMLFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 372
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 373 TWWIRQAITRAMADQARTIRIPVHMVEV 400
>gi|410450654|ref|ZP_11304688.1| RNA polymerase sigma factor RpoD [Leptospira sp. Fiocruz LV3954]
gi|410015532|gb|EKO77630.1| RNA polymerase sigma factor RpoD [Leptospira sp. Fiocruz LV3954]
Length = 579
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 292 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 344
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 345 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 404
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 405 ITRAISDQARTIRVPVHMI 423
>gi|419672484|ref|ZP_14201979.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 51037]
gi|380655692|gb|EIB71998.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 51037]
Length = 622
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|417764155|ref|ZP_12412127.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Bulgarica str. Mallika]
gi|400353669|gb|EJP05831.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Bulgarica str. Mallika]
Length = 585
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 411 ITRAISDQARTIRVPVHMI 429
>gi|419682848|ref|ZP_14211567.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1213]
gi|380660859|gb|EIB76793.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1213]
Length = 622
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|377562745|ref|ZP_09792113.1| RNA polymerase sigma factor SigA [Gordonia sputi NBRC 100414]
gi|377530042|dbj|GAB37278.1| RNA polymerase sigma factor SigA [Gordonia sputi NBRC 100414]
Length = 483
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 243 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 302
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 303 TWWIRQAITRAMADQARTIRIPVHMVEV 330
>gi|86150479|ref|ZP_01068704.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88596833|ref|ZP_01100070.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 84-25]
gi|148926089|ref|ZP_01809775.1| RNA polymerase sigma factor (sigma-70) [Campylobacter jejuni subsp.
jejuni CG8486]
gi|218562617|ref|YP_002344396.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NCTC 11168 = ATCC 700819]
gi|384443357|ref|YP_005659609.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni S3]
gi|384448250|ref|YP_005656301.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni IA3902]
gi|403055740|ref|YP_006633145.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NCTC 11168-BN148]
gi|407942388|ref|YP_006858030.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni PT14]
gi|415730018|ref|ZP_11472777.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|419620650|ref|ZP_14154072.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 51494]
gi|419623441|ref|ZP_14156569.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23218]
gi|419628307|ref|ZP_14161174.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23263]
gi|419630036|ref|ZP_14162743.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 60004]
gi|419631185|ref|ZP_14163780.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23264]
gi|419636726|ref|ZP_14168916.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9879]
gi|419638535|ref|ZP_14170595.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 86605]
gi|419645079|ref|ZP_14176642.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9081]
gi|419647136|ref|ZP_14178575.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 53161]
gi|419648514|ref|ZP_14179853.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9217]
gi|419649899|ref|ZP_14181130.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-1025]
gi|419656582|ref|ZP_14187370.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-988]
gi|419661347|ref|ZP_14191674.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-831]
gi|419664484|ref|ZP_14194631.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-4]
gi|419666681|ref|ZP_14196674.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-10]
gi|419671602|ref|ZP_14201255.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-14]
gi|419674574|ref|ZP_14203861.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 110-21]
gi|419678056|ref|ZP_14207158.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 87330]
gi|419678314|ref|ZP_14207374.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 87459]
gi|419680718|ref|ZP_14209572.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 140-16]
gi|419690985|ref|ZP_14219170.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1893]
gi|419692129|ref|ZP_14220228.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1928]
gi|85839074|gb|EAQ56338.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|88191674|gb|EAQ95646.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112360323|emb|CAL35119.1| RNA polymerase sigma factor (sigma-70) [Campylobacter jejuni subsp.
jejuni NCTC 11168 = ATCC 700819]
gi|145845568|gb|EDK22660.1| RNA polymerase sigma factor (sigma-70) [Campylobacter jejuni subsp.
jejuni CG8486]
gi|284926231|gb|ADC28583.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni IA3902]
gi|315058444|gb|ADT72773.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni S3]
gi|315928360|gb|EFV07675.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|380599113|gb|EIB19493.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 51494]
gi|380600963|gb|EIB21286.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23218]
gi|380604951|gb|EIB24943.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23263]
gi|380606452|gb|EIB26364.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 60004]
gi|380611301|gb|EIB30855.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23264]
gi|380616752|gb|EIB35941.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9879]
gi|380618603|gb|EIB37727.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 86605]
gi|380621005|gb|EIB39847.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9081]
gi|380621833|gb|EIB40614.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 53161]
gi|380626343|gb|EIB44820.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9217]
gi|380629159|gb|EIB47430.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-1025]
gi|380634705|gb|EIB52571.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-988]
gi|380640434|gb|EIB57891.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-831]
gi|380640931|gb|EIB58354.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-4]
gi|380647269|gb|EIB64191.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-10]
gi|380649180|gb|EIB65933.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-14]
gi|380652252|gb|EIB68749.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 87330]
gi|380652855|gb|EIB69311.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 110-21]
gi|380659712|gb|EIB75679.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 140-16]
gi|380661003|gb|EIB76927.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 87459]
gi|380667836|gb|EIB83238.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1893]
gi|380670866|gb|EIB86110.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1928]
gi|401781392|emb|CCK67096.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NCTC 11168-BN148]
gi|407906226|gb|AFU43055.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni PT14]
Length = 622
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|359726555|ref|ZP_09265251.1| RNA polymerase sigma-70 factor [Leptospira weilii str. 2006001855]
gi|398332850|ref|ZP_10517555.1| RNA polymerase sigma-70 factor [Leptospira alexanderi serovar
Manhao 3 str. L 60]
gi|417780595|ref|ZP_12428356.1| RNA polymerase sigma factor RpoD [Leptospira weilii str.
2006001853]
gi|410779304|gb|EKR63921.1| RNA polymerase sigma factor RpoD [Leptospira weilii str.
2006001853]
gi|456865569|gb|EMF83903.1| RNA polymerase sigma factor RpoD [Leptospira weilii serovar Topaz
str. LT2116]
Length = 585
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 411 ITRAISDQARTIRVPVHMI 429
>gi|315604554|ref|ZP_07879617.1| DNA-directed RNA polymerase sigma subunit RpoD [Actinomyces sp.
oral taxon 180 str. F0310]
gi|315313566|gb|EFU61620.1| DNA-directed RNA polymerase sigma subunit RpoD [Actinomyces sp.
oral taxon 180 str. F0310]
Length = 516
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 276 GQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 335
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 336 TWWIRQAITRAMADQARTIRIPVHMVEV 363
>gi|229815176|ref|ZP_04445512.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
gi|229809186|gb|EEP44952.1| hypothetical protein COLINT_02221 [Collinsella intestinalis DSM
13280]
Length = 448
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE------RVLKQHLAFGWYCREELIK 302
V ++ E + ++ E+G A+ Q AG E R L + G ++ LI
Sbjct: 156 VDLLTAAEEVDLAMKIEAGLDAADKLEKQEAGEIELTRAEMRRLMRVEQVGLDAKQALIS 215
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++
Sbjct: 216 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYEKGFKFSTYATWWIRQAITR 275
Query: 363 MVARHARGIKIPVPLF 378
+A AR I+IPV +
Sbjct: 276 AIADQARTIRIPVHMV 291
>gi|406573932|ref|ZP_11049673.1| RNA polymerase sigma factor [Janibacter hoylei PVAS-1]
gi|404556712|gb|EKA62173.1| RNA polymerase sigma factor [Janibacter hoylei PVAS-1]
Length = 492
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 94/166 (56%), Gaps = 28/166 (16%)
Query: 236 LTIARNEAEMSKGVQVV---ANLERIKTTLEKESGKAASLNCWAQAAGVSERV-----LK 287
TI+ ++ + + QVV A + +K L K+ GK A LN Q +++R+ +
Sbjct: 171 FTISNDDEDDAPAQQVVTAGATADPVKDYL-KQIGKVALLNA-EQEVELAKRIEAGLFAE 228
Query: 288 QHLAFG-----------WY-------CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAG 329
+ LA G W+ + L+++ LV+ LA+ Y G G+ F DL+Q G
Sbjct: 229 EKLASGEKIEMKFKRELWWIAQDGKNAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEG 288
Query: 330 NVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
N+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 289 NLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV 334
>gi|419693749|ref|ZP_14221733.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9872]
gi|380672370|gb|EIB87543.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 9872]
Length = 622
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|359685998|ref|ZP_09255999.1| RNA polymerase sigma-70 factor [Leptospira santarosai str.
2000030832]
gi|422004532|ref|ZP_16351749.1| RNA polymerase sigma-70 factor [Leptospira santarosai serovar
Shermani str. LT 821]
gi|417256834|gb|EKT86248.1| RNA polymerase sigma-70 factor [Leptospira santarosai serovar
Shermani str. LT 821]
Length = 585
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 411 ITRAISDQARTIRVPVHMI 429
>gi|312143990|ref|YP_003995436.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halanaerobium
hydrogeniformans]
gi|311904641|gb|ADQ15082.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halanaerobium
hydrogeniformans]
Length = 360
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 62/81 (76%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ +++L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +
Sbjct: 122 WAKQQLVEANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLMKAVEKFDYTKGYKFSTYATW 181
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR++I++ +A AR I++PV
Sbjct: 182 WIRQAITRSIADQARTIRVPV 202
>gi|332653408|ref|ZP_08419153.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
gi|332518554|gb|EGJ48157.1| RNA polymerase sigma factor RpoD [Ruminococcaceae bacterium D16]
Length = 446
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 70/112 (62%), Gaps = 8/112 (7%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
+ESG+ A+ L + + G ++ L ++ LV+ +A+ Y G G+ F
Sbjct: 185 QESGEEIPAEVLAE--------LNKAIKRGERAKQRLAEANLRLVVSIAKRYVGRGMQFL 236
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 237 DLIQEGNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPV 288
>gi|312195623|ref|YP_004015684.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311226959|gb|ADP79814.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 418
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ +AR Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 178 GEIAKSRLVEANLRLVVSIARRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 237
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 238 TWWIRQAITRAIADQARTIRIPV 260
>gi|384441617|ref|YP_005657920.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni M1]
gi|307747900|gb|ADN91170.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni M1]
Length = 622
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|57237826|ref|YP_179074.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni RM1221]
gi|86150708|ref|ZP_01068924.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86152585|ref|ZP_01070790.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|121612947|ref|YP_001000680.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157415258|ref|YP_001482514.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81116]
gi|167005602|ref|ZP_02271360.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81-176]
gi|205356712|ref|ZP_03223473.1| RNA polymerase sigma factor (sigma 70) [Campylobacter jejuni subsp.
jejuni CG8421]
gi|315124489|ref|YP_004066493.1| RNA polymerase sigma factor [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|415745354|ref|ZP_11474810.1| Phosphatidylserine decarboxylase [Campylobacter jejuni subsp.
jejuni 327]
gi|419618734|ref|ZP_14152265.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 129-258]
gi|419634754|ref|ZP_14167081.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 55037]
gi|419652763|ref|ZP_14183822.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-894]
gi|419653797|ref|ZP_14184758.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-872]
gi|419658496|ref|ZP_14189124.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-1]
gi|419660252|ref|ZP_14190731.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-979]
gi|419664739|ref|ZP_14194818.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-7]
gi|419669090|ref|ZP_14198886.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-11]
gi|419686801|ref|ZP_14215224.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1798]
gi|419688243|ref|ZP_14216570.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1854]
gi|419696468|ref|ZP_14224324.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23210]
gi|419698309|ref|ZP_14226026.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23211]
gi|424847537|ref|ZP_18272103.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NW]
gi|424850423|ref|ZP_18274836.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni D2600]
gi|57166630|gb|AAW35409.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni RM1221]
gi|85841878|gb|EAQ59124.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85843470|gb|EAQ60680.1| RNA polymerase sigma factor rpoD [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87249244|gb|EAQ72205.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81-176]
gi|157386222|gb|ABV52537.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 81116]
gi|205345450|gb|EDZ32092.1| RNA polymerase sigma factor (sigma 70) [Campylobacter jejuni subsp.
jejuni CG8421]
gi|315018211|gb|ADT66304.1| RNA polymerase sigma factor [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315932129|gb|EFV11072.1| Phosphatidylserine decarboxylase [Campylobacter jejuni subsp.
jejuni 327]
gi|356485168|gb|EHI15170.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni NW]
gi|356487105|gb|EHI17078.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni D2600]
gi|380594377|gb|EIB15176.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 129-258]
gi|380614048|gb|EIB33497.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 55037]
gi|380628125|gb|EIB46460.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-894]
gi|380632119|gb|EIB50237.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-872]
gi|380633391|gb|EIB51350.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-1]
gi|380637213|gb|EIB54861.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 2008-979]
gi|380644419|gb|EIB61601.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-7]
gi|380647961|gb|EIB64844.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1997-11]
gi|380663543|gb|EIB79178.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1798]
gi|380666110|gb|EIB81664.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1854]
gi|380674237|gb|EIB89181.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23210]
gi|380675471|gb|EIB90374.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23211]
Length = 622
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|418696549|ref|ZP_13257558.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str. H1]
gi|409956078|gb|EKO15010.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str. H1]
Length = 579
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 292 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 344
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 345 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 404
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 405 ITRAISDQARTIRVPVHMI 423
>gi|419685146|ref|ZP_14213714.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1577]
gi|380665070|gb|EIB80649.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1577]
Length = 622
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|419643191|ref|ZP_14174950.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni ATCC 33560]
gi|380622903|gb|EIB41636.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni ATCC 33560]
Length = 622
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|2764713|emb|CAA05353.1| sigma 70 [Campylobacter jejuni]
Length = 622
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|293189827|ref|ZP_06608541.1| carbamoyl-phosphate synthase L chain, ATP-binding [Actinomyces
odontolyticus F0309]
gi|292821242|gb|EFF80187.1| carbamoyl-phosphate synthase L chain, ATP-binding [Actinomyces
odontolyticus F0309]
Length = 561
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 321 GQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 380
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 381 TWWIRQAITRAMADQARTIRIPVHMVEV 408
>gi|418719109|ref|ZP_13278309.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str. UI
09149]
gi|418738638|ref|ZP_13295031.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|421094152|ref|ZP_15554872.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200801926]
gi|410362878|gb|EKP13911.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200801926]
gi|410744262|gb|EKQ93003.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str. UI
09149]
gi|410745336|gb|EKQ98246.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|456887892|gb|EMF98905.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200701203]
Length = 585
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 411 ITRAISDQARTIRVPVHMI 429
>gi|399156454|ref|ZP_10756521.1| RpoD subfamily RNA polymerase sigma-70 subunit [SAR324 cluster
bacterium SCGC AAA001-C10]
Length = 596
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 74/122 (60%), Gaps = 7/122 (5%)
Query: 257 RIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYR 316
RI T +E+ + + N ++ ER +K + +L+++ LV+ +A+ Y
Sbjct: 327 RISTMIEQTTLSLDNFNLEVKSLKQVERRVKS-------AKSQLVEANLRLVISIAKKYT 379
Query: 317 GLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVP 376
G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR+SI++ +A AR I+IPV
Sbjct: 380 NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQSITRAIADQARTIRIPVH 439
Query: 377 LF 378
+
Sbjct: 440 MI 441
>gi|24214932|ref|NP_712413.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar Lai
str. 56601]
gi|45657567|ref|YP_001653.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386074282|ref|YP_005988599.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar Lai
str. IPAV]
gi|417761074|ref|ZP_12409088.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000624]
gi|417768940|ref|ZP_12416862.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Pomona]
gi|417773531|ref|ZP_12421408.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000621]
gi|417782997|ref|ZP_12430720.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
C10069]
gi|418667800|ref|ZP_13229205.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418672640|ref|ZP_13233976.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000623]
gi|418692659|ref|ZP_13253737.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
FPW2026]
gi|418701583|ref|ZP_13262507.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Bataviae str. L1111]
gi|418703527|ref|ZP_13264411.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|418710902|ref|ZP_13271668.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|418717863|ref|ZP_13277402.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
08452]
gi|418726272|ref|ZP_13284883.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
12621]
gi|418733427|ref|ZP_13290551.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
12758]
gi|421086235|ref|ZP_15547086.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
HAI1594]
gi|421118518|ref|ZP_15578855.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|421121172|ref|ZP_15581471.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. Brem
329]
gi|421124053|ref|ZP_15584323.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|421134692|ref|ZP_15594825.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|26399555|sp|P59117.1|RPOD_LEPIN RecName: Full=RNA polymerase sigma factor RpoD
gi|47605974|sp|P61540.1|RPOD_LEPIC RecName: Full=RNA polymerase sigma factor RpoD
gi|24195965|gb|AAN49431.1|AE011394_5 RNA polymerase sigma-70 factor [Leptospira interrogans serovar Lai
str. 56601]
gi|45600806|gb|AAS70290.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353458071|gb|AER02616.1| RNA polymerase sigma-70 factor [Leptospira interrogans serovar Lai
str. IPAV]
gi|400357892|gb|EJP14012.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
FPW2026]
gi|409943068|gb|EKN88671.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000624]
gi|409949090|gb|EKN99072.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Pomona]
gi|409953698|gb|EKO08194.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
C10069]
gi|409960182|gb|EKO23936.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
12621]
gi|410009877|gb|EKO68031.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Canicola str. Fiocruz LV133]
gi|410021276|gb|EKO88068.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. Andaman]
gi|410346000|gb|EKO97044.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. Brem
329]
gi|410431800|gb|EKP76160.1| RNA polymerase sigma factor RpoD [Leptospira santarosai str.
HAI1594]
gi|410438540|gb|EKP87626.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. 2006006986]
gi|410576619|gb|EKQ39624.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000621]
gi|410580328|gb|EKQ48153.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str.
2002000623]
gi|410756245|gb|EKR17870.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|410759368|gb|EKR25581.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Bataviae str. L1111]
gi|410766663|gb|EKR37346.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Hebdomadis str. R499]
gi|410768502|gb|EKR43749.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. UI 08368]
gi|410773036|gb|EKR53067.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
12758]
gi|410786736|gb|EKR80474.1| RNA polymerase sigma factor RpoD [Leptospira interrogans str. UI
08452]
gi|455792672|gb|EMF44412.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Lora str. TE 1992]
gi|456821632|gb|EMF70138.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 585
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 411 ITRAISDQARTIRVPVHMI 429
>gi|453382628|dbj|GAC82923.1| RNA polymerase sigma factor SigA [Gordonia paraffinivorans NBRC
108238]
Length = 527
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 287 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 346
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 347 TWWIRQAITRAMADQARTIRIPVHMVEV 374
>gi|398336925|ref|ZP_10521630.1| RNA polymerase sigma-70 factor [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 585
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 411 ITRAISDQARTIRVPVHMI 429
>gi|456983033|gb|EMG19441.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Copenhageni str. LT2050]
Length = 477
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 190 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 242
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 243 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 302
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 303 ITRAISDQARTIRVPVHMI 321
>gi|81300555|ref|YP_400763.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
gi|123556657|sp|Q31ME3.1|RPOD2_SYNE7 RecName: Full=RNA polymerase sigma factor rpoD2
gi|81169436|gb|ABB57776.1| group2 RNA polymerase sigma factor SigB [Synechococcus elongatus
PCC 7942]
Length = 320
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E + VQ + L +T L G S WA A ++ L
Sbjct: 17 LQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLD 76
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ + G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD ++GYK
Sbjct: 77 RQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYK 136
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A+ +R I++P+
Sbjct: 137 FSTYAYWWIRQAITRAIAQQSRTIRLPI 164
>gi|404214757|ref|YP_006668952.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
gi|403645556|gb|AFR48796.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Gordonia sp. KTR9]
Length = 474
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 234 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 293
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 294 TWWIRQAITRAMADQARTIRIPVHMVEV 321
>gi|386852074|ref|YP_006270087.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
gi|359839578|gb|AEV88019.1| RNA polymerase principal sigma factor hrdB [Actinoplanes sp.
SE50/110]
Length = 329
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 63/89 (70%)
Query: 290 LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFS 349
+A G + L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFS
Sbjct: 86 IAEGRAAKNHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFS 145
Query: 350 TYVQYWIRKSISKMVARHARGIKIPVPLF 378
TY +WIR++I++ +A AR I+IPV +
Sbjct: 146 TYATWWIRQAITRAMADQARTIRIPVHMV 174
>gi|283956399|ref|ZP_06373879.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1336]
gi|283792119|gb|EFC30908.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni 1336]
Length = 622
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|119953489|ref|YP_945698.1| RNA polymerase sigma factor RpoD [Borrelia turicatae 91E135]
gi|119862260|gb|AAX18028.1| RNA polymerase sigma factor RpoD [Borrelia turicatae 91E135]
Length = 630
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 88/153 (57%), Gaps = 15/153 (9%)
Query: 226 ERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
E++LN R + EA++++ LERI+ E K S+ SE +
Sbjct: 335 EKSLNIREDLIKEQITEAQLAQ-----KELERIEMYYEYPMDKIISM---------SEEI 380
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 381 LKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRG 439
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 440 FKFSTYATWWIRQAITRSISDQARTIRVPVHMI 472
>gi|116328273|ref|YP_797993.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leptospira borgpetersenii serovar Hardjo-bovis str.
L550]
gi|116330997|ref|YP_800715.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leptospira borgpetersenii serovar Hardjo-bovis str.
JB197]
gi|116121017|gb|ABJ79060.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leptospira borgpetersenii serovar Hardjo-bovis str.
L550]
gi|116124686|gb|ABJ75957.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Leptospira borgpetersenii serovar Hardjo-bovis str.
JB197]
Length = 585
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 411 ITRAISDQARTIRVPVHMI 429
>gi|1553011|gb|AAC45097.1| primary sigma factor, partial [Borrelia afzelii]
Length = 450
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 309
>gi|410940970|ref|ZP_11372769.1| RNA polymerase sigma factor RpoD [Leptospira noguchii str.
2006001870]
gi|410783529|gb|EKR72521.1| RNA polymerase sigma factor RpoD [Leptospira noguchii str.
2006001870]
Length = 585
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 411 ITRAISDQARTIRVPVHMI 429
>gi|145594022|ref|YP_001158319.1| RNA polymerase sigma factor [Salinispora tropica CNB-440]
gi|145303359|gb|ABP53941.1| RNA polymerase sigma factor RpoD [Salinispora tropica CNB-440]
Length = 542
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 302 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 361
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 362 TWWIRQAITRAMADQARTIRIPV 384
>gi|57505389|ref|ZP_00371317.1| RNA polymerase sigma factor RpoD [Campylobacter upsaliensis RM3195]
gi|57016214|gb|EAL53000.1| RNA polymerase sigma factor RpoD [Campylobacter upsaliensis RM3195]
Length = 619
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 382 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 441
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 442 ISRAIADQARTIRIPIHMI 460
>gi|418681199|ref|ZP_13242432.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|400327020|gb|EJO79276.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Kennewicki LC82-25]
gi|455666955|gb|EMF32326.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Pomona str. Fox 32256]
Length = 585
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 411 ITRAISDQARTIRVPVHMI 429
>gi|398339101|ref|ZP_10523804.1| RNA polymerase sigma-70 factor [Leptospira kirschneri serovar Bim
str. 1051]
gi|418677117|ref|ZP_13238395.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|418688253|ref|ZP_13249409.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|418739874|ref|ZP_13296255.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
gi|421090834|ref|ZP_15551624.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str.
200802841]
gi|421106512|ref|ZP_15567079.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str. H2]
gi|421132400|ref|ZP_15592568.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str.
2008720114]
gi|400323017|gb|EJO70873.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Grippotyphosa str. RM52]
gi|410000420|gb|EKO51050.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str.
200802841]
gi|410008439|gb|EKO62109.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str. H2]
gi|410356165|gb|EKP03522.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri str.
2008720114]
gi|410737110|gb|EKQ81852.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Grippotyphosa str. Moskva]
gi|410752996|gb|EKR09968.1| RNA polymerase sigma factor RpoD [Leptospira kirschneri serovar
Valbuzzi str. 200702274]
Length = 585
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 411 ITRAISDQARTIRVPVHMI 429
>gi|419640561|ref|ZP_14172490.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23357]
gi|380619291|gb|EIB38368.1| RNA polymerase sigma factor RpoD [Campylobacter jejuni subsp.
jejuni LMG 23357]
Length = 622
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 385 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 444
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 445 ISRAIADQARTIRIPIHMI 463
>gi|417001145|ref|ZP_11941059.1| RNA polymerase sigma factor RpoD [Veillonella parvula
ACS-068-V-Sch12]
gi|333975628|gb|EGL76507.1| RNA polymerase sigma factor RpoD [Veillonella parvula
ACS-068-V-Sch12]
Length = 386
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 66/100 (66%)
Query: 279 AGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
AG E + + +++L+ + LV+ +A+ Y G G+ F DL+Q GN+G+++ +
Sbjct: 133 AGSQEDATYKDIQLSKKAKKKLVDANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVD 192
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+FD+T+GYKFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 193 KFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMV 232
>gi|315638945|ref|ZP_07894116.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter
upsaliensis JV21]
gi|315480974|gb|EFU71607.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter
upsaliensis JV21]
Length = 657
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 420 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 479
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 480 ISRAIADQARTIRIPIHMI 498
>gi|219849586|ref|YP_002464019.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chloroflexus
aggregans DSM 9485]
gi|219543845|gb|ACL25583.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chloroflexus
aggregans DSM 9485]
Length = 314
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 61/92 (66%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L +A G R +LI S LV+ +AR Y+G G+ DL+Q G++G+++ ++FD RG
Sbjct: 64 LAAQVAAGEQARAQLINSNLRLVVSIARRYQGHGLTLLDLIQEGSIGLMRAVDKFDAGRG 123
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
KFSTY YWIR+SI + +A H+R +++PV L
Sbjct: 124 LKFSTYATYWIRQSIGRAIADHSRTVRLPVHL 155
>gi|113477482|ref|YP_723543.1| RNA polymerase sigma factor SigD [Trichodesmium erythraeum IMS101]
gi|110168530|gb|ABG53070.1| RNA polymerase, sigma 28 subunit [Trichodesmium erythraeum IMS101]
Length = 319
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 86/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ K VQ + L+ TL + G+ +L WA+A +S+ L++ +
Sbjct: 21 RVPLLSHEEEILYGKQVQRLTALQEFNQTLAEALGREPTLLEWAEAKELSKSELQRIIRE 80
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 81 GERAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYA 140
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 141 YWWIRQAITRAIAEKGRTIRLPI 163
>gi|441508334|ref|ZP_20990258.1| RNA polymerase sigma factor SigA [Gordonia aichiensis NBRC 108223]
gi|441447362|dbj|GAC48219.1| RNA polymerase sigma factor SigA [Gordonia aichiensis NBRC 108223]
Length = 485
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 245 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 304
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 305 TWWIRQAITRAMADQARTIRIPVHMVEV 332
>gi|389865571|ref|YP_006367812.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
gi|388487775|emb|CCH89337.1| RNA polymerase sigma factor rpoD [Modestobacter marinus]
Length = 447
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 207 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 266
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 267 TWWIRQAITRAMADQARTIRIPVHMVEV 294
>gi|428207075|ref|YP_007091428.1| RpoD subfamily RNA polymerase sigma-70 subunit [Chroococcidiopsis
thermalis PCC 7203]
gi|428008996|gb|AFY87559.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Chroococcidiopsis
thermalis PCC 7203]
Length = 330
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 76/129 (58%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + ++ W SE L + G ++++I++
Sbjct: 46 KQVQQMMALLDAKEALVKKLRREPTMEEWTAKVNTSEAELNDLIRKGQRAKQKMIEANLR 105
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD RGYKFSTY +WIR++I++ +A+
Sbjct: 106 LVVAIAKKYQKRNMEFLDLIQEGTMGLERGVEKFDPIRGYKFSTYAYWWIRQAITRAIAQ 165
Query: 367 HARGIKIPV 375
AR I++P+
Sbjct: 166 QARTIRLPI 174
>gi|186683480|ref|YP_001866676.1| RpoD family RNA polymerase sigma factor [Nostoc punctiforme PCC
73102]
gi|186465932|gb|ACC81733.1| RNA polymerase, sigma 70 subunit, RpoD family [Nostoc punctiforme
PCC 73102]
Length = 332
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 85/143 (59%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ +K VQ + L K L + + + W + + E+ L Q L
Sbjct: 34 RIPLLTHEQEINFAKQVQKMMALLATKEKLAIQLKRQPTQKEWIENINIGEKSLLQQLHQ 93
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++++I++ LV+ +A+ Y+ + F DL+Q G++G+ +G E+FD T+GYKFSTY
Sbjct: 94 GQKAKQKMIQANLRLVVSIAKKYQRHNLDFLDLIQEGSLGLERGVEKFDPTKGYKFSTYG 153
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 154 YWWIRQAITRAIAEQGRTIRLPI 176
>gi|440682243|ref|YP_007157038.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
gi|428679362|gb|AFZ58128.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Anabaena
cylindrica PCC 7122]
Length = 318
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L ++ L + + +L WA AA + L + +A
Sbjct: 20 RVPLLTHEEEIRYGKQVQRCTALYEVRENLATQLDRQPNLEEWAAAAQIELVELNEAIAE 79
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD T+GY+FSTY
Sbjct: 80 GETAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYA 139
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I++P+
Sbjct: 140 YWWIRQAITRAIAEKARTIRLPI 162
>gi|403730493|ref|ZP_10949025.1| RNA polymerase sigma factor SigA, partial [Gordonia rhizosphera
NBRC 16068]
gi|403202474|dbj|GAB93356.1| RNA polymerase sigma factor SigA, partial [Gordonia rhizosphera
NBRC 16068]
Length = 442
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 240 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 299
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 300 TWWIRQAITRAMADQARTIRIPV 322
>gi|375094960|ref|ZP_09741225.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
gi|374655693|gb|EHR50526.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
marina XMU15]
Length = 470
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 66/97 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 221 RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 280
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+G+KFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 281 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 317
>gi|358461550|ref|ZP_09171710.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357073123|gb|EHI82638.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 416
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ +AR Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 176 GEVAKSRLVEANLRLVVSIARRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 235
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 236 TWWIRQAITRAIADQARTIRIPV 258
>gi|359427064|ref|ZP_09218139.1| RNA polymerase sigma factor SigA [Gordonia amarae NBRC 15530]
gi|358237677|dbj|GAB07721.1| RNA polymerase sigma factor SigA [Gordonia amarae NBRC 15530]
Length = 491
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 251 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 310
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 311 TWWIRQAITRAMADQARTIRIPVHMVEV 338
>gi|326384438|ref|ZP_08206118.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
gi|326196783|gb|EGD53977.1| RNA polymerase sigma factor [Gordonia neofelifaecis NRRL B-59395]
Length = 466
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 226 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 285
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 286 TWWIRQAITRAMADQARTIRIPVHMVEV 313
>gi|37523928|ref|NP_927305.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
gi|35214934|dbj|BAC92300.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 344
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 229 LNSRGR--RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVL 286
LN GR R+T E +++ +Q ++ + L G+ + A G + L
Sbjct: 38 LNEIGRIPRVT-PEEEIHLARRIQAKLAIDGAREELAMRLGRPSPEEDVAAFMGRDPKAL 96
Query: 287 KQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGY 346
+ G + + +LI + LV+ +A+ Y G +PF DL+Q GN+G+++ E+FD +GY
Sbjct: 97 IEATRQGLWAQRKLINANLRLVVSIAKKYIGRNVPFLDLIQEGNIGLMRATEKFDPEKGY 156
Query: 347 KFSTYVQYWIRKSISKMVARHARGIKIPV 375
+FSTY +WIR+SI++ +A AR I++P+
Sbjct: 157 RFSTYATWWIRQSITRAIANQARTIRLPI 185
>gi|258653895|ref|YP_003203051.1| RpoD subfamily RNA polymerase sigma-70 subunit [Nakamurella
multipartita DSM 44233]
gi|258557120|gb|ACV80062.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Nakamurella
multipartita DSM 44233]
Length = 448
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 208 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 267
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 268 TWWIRQAITRAMADQARTIRIPV 290
>gi|1553027|gb|AAC45105.1| primary sigma factor, partial [Borrelia garinii]
Length = 450
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 309
>gi|359767847|ref|ZP_09271629.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans NBRC
16320]
gi|378717657|ref|YP_005282546.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans VH2]
gi|359314763|dbj|GAB24462.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans NBRC
16320]
gi|375752360|gb|AFA73180.1| RNA polymerase sigma factor SigA [Gordonia polyisoprenivorans VH2]
Length = 483
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 243 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 302
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 303 TWWIRQAITRAMADQARTIRIPV 325
>gi|381162242|ref|ZP_09871472.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
gi|379254147|gb|EHY88073.1| RNA polymerase sigma factor, sigma-70 family [Saccharomonospora
azurea NA-128]
Length = 514
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 66/97 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 265 RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 324
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+G+KFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 325 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 361
>gi|288916958|ref|ZP_06411330.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
gi|288351667|gb|EFC85872.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EUN1f]
Length = 392
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 152 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 211
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 212 TWWIRQAITRAIADQARTIRIPV 234
>gi|145594010|ref|YP_001158307.1| RNA polymerase sigma factor SigB [Salinispora tropica CNB-440]
gi|145303347|gb|ABP53929.1| sigma-70 region 2 domain protein [Salinispora tropica CNB-440]
Length = 332
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 63/88 (71%)
Query: 291 AFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFST 350
A G ++ L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFST
Sbjct: 89 AEGRAAKDHLLEANLRLVVSIAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFST 148
Query: 351 YVQYWIRKSISKMVARHARGIKIPVPLF 378
Y +WIR++I++ +A AR I+IPV +
Sbjct: 149 YATWWIRQAITRAMADQARTIRIPVHMV 176
>gi|421097573|ref|ZP_15558258.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200901122]
gi|410799400|gb|EKS01475.1| RNA polymerase sigma factor RpoD [Leptospira borgpetersenii str.
200901122]
Length = 585
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 411 ITRAISDQARTIRVPVHMI 429
>gi|398347296|ref|ZP_10531999.1| RNA polymerase sigma-70 factor [Leptospira broomii str. 5399]
Length = 589
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 83/136 (61%), Gaps = 8/136 (5%)
Query: 244 EMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREELIK 302
E+ + ++ + N ER +E+E+G + + W + ER + Q ++EL+K
Sbjct: 306 EVREVIKDIRNNERKLRRMEQEAGSSVQEIKDWGEKIIKGEREIAQ-------AKKELVK 358
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++I++
Sbjct: 359 ANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITR 418
Query: 363 MVARHARGIKIPVPLF 378
++ AR I++PV +
Sbjct: 419 AISDQARTIRVPVHMI 434
>gi|291279867|ref|YP_003496702.1| DNA-directed RNA polymerase sigma 70 factor [Deferribacter
desulfuricans SSM1]
gi|290754569|dbj|BAI80946.1| DNA-directed RNA polymerase sigma 70 factor [Deferribacter
desulfuricans SSM1]
Length = 598
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 64/98 (65%), Gaps = 4/98 (4%)
Query: 285 VLKQHLAFGWY----CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
V+ L G Y + ELI++ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F
Sbjct: 346 VIYNSLLEGEYEAEKAKSELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVEKF 405
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
++ RGYKFSTY +WIR+SI++ +A AR I+IPV +
Sbjct: 406 EYRRGYKFSTYATWWIRQSITRAIADQARTIRIPVHMI 443
>gi|302866088|ref|YP_003834725.1| RNA polymerase sigma factor RpoD [Micromonospora aurantiaca ATCC
27029]
gi|302568947|gb|ADL45149.1| RNA polymerase sigma factor RpoD [Micromonospora aurantiaca ATCC
27029]
Length = 551
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 311 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 370
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 371 TWWIRQAITRAMADQARTIRIPV 393
>gi|148658692|ref|YP_001278897.1| RpoD family RNA polymerase sigma factor [Roseiflexus sp. RS-1]
gi|148570802|gb|ABQ92947.1| RNA polymerase, sigma 70 subunit, RpoD family [Roseiflexus sp.
RS-1]
Length = 401
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 78/128 (60%), Gaps = 1/128 (0%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV-LKQHLAFGWYCREELIKSTRPL 307
V ++ E I + E G+ AS SER+ L + + G RE LI++ L
Sbjct: 116 VNLLTAQEEIMLAQQVERGEQASERLQKGDYAPSERLQLHRWVQEGQAARERLIQANLRL 175
Query: 308 VLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARH 367
V+ +A+ Y G G+ DL+Q GN+G+++ E+FD+ +GYKFSTY +WIR++I++++A
Sbjct: 176 VVSIAKKYLGRGMSLLDLIQEGNIGLMRATEKFDYRKGYKFSTYATWWIRQAITRVIADQ 235
Query: 368 ARGIKIPV 375
+R I++PV
Sbjct: 236 SRTIRLPV 243
>gi|383782026|ref|YP_005466593.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
gi|381375259|dbj|BAL92077.1| putative RNA polymerase sigma factor [Actinoplanes missouriensis
431]
Length = 535
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 64/93 (68%)
Query: 283 ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342
ER LK G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+
Sbjct: 285 ERDLKWINRDGERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDY 344
Query: 343 TRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
T+GYKFSTY +WIR++I++ +A AR I+IPV
Sbjct: 345 TKGYKFSTYATWWIRQAITRAMADQARTIRIPV 377
>gi|222824021|ref|YP_002575595.1| RNA polymerase sigma factor RpoD [Campylobacter lari RM2100]
gi|222539243|gb|ACM64344.1| RNA polymerase sigma 70 factor [Campylobacter lari RM2100]
Length = 625
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 388 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 447
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 448 ISRAIADQARTIRIPIHMI 466
>gi|421102433|ref|ZP_15563037.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410367547|gb|EKP22931.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
Length = 585
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 350
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 351 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 410
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 411 ITRAISDQARTIRVPVHMI 429
>gi|398345316|ref|ZP_10530019.1| RNA polymerase sigma-70 factor [Leptospira inadai serovar Lyme str.
10]
Length = 589
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 83/136 (61%), Gaps = 8/136 (5%)
Query: 244 EMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREELIK 302
E+ + ++ + N ER +E+E+G + + W + ER + Q ++EL+K
Sbjct: 306 EVREVIKDIRNNERKLRRMEQEAGSSVQEIKDWGEKIIKGEREIAQ-------AKKELVK 358
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++I++
Sbjct: 359 ANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITR 418
Query: 363 MVARHARGIKIPVPLF 378
++ AR I++PV +
Sbjct: 419 AISDQARTIRVPVHMI 434
>gi|330448778|ref|ZP_08312425.1| sigma70 factor RNA polymerase, sigma 70 (sigma D) factor
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328492969|dbj|GAA06922.1| sigma70 factor RNA polymerase, sigma 70 (sigma D) factor
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 616
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 80/130 (61%), Gaps = 7/130 (5%)
Query: 256 ERIKTTLEKESGKAASLNCWAQAAGVS-ERV--LKQHLAFGWY----CREELIKSTRPLV 308
ER+KT E A L + G+S ER+ + + ++ G ++E++++ LV
Sbjct: 331 ERLKTYEEDLRRSAIKLRMLEEETGLSIERIKDISRRMSIGEAKARRAKKEMVEANLRLV 390
Query: 309 LFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHA 368
+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A A
Sbjct: 391 ISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 450
Query: 369 RGIKIPVPLF 378
R I+IPV +
Sbjct: 451 RTIRIPVHMI 460
>gi|1553025|gb|AAC45104.1| primary sigma factor, partial [Borrelia garinii]
gi|1553031|gb|AAC45107.1| primary sigma factor, partial [Borrelia garinii]
Length = 450
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 309
>gi|309790481|ref|ZP_07685041.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG-6]
gi|308227468|gb|EFO81136.1| sigma-70 family RNA polymerase sigma factor [Oscillochloris
trichoides DG6]
Length = 346
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 84/158 (53%), Gaps = 14/158 (8%)
Query: 219 QPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQ 277
+PT + + L GR L A E E+S ERI+ E E L Q
Sbjct: 44 EPTPDAVQHYLQEIGRVSLLTANEEVELS---------ERIERGDEAEE----RLATEDQ 90
Query: 278 AAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGA 337
+G R L+ + G R LI++ LV+ +A+ Y G G+ DL+Q GN+G+++
Sbjct: 91 LSGTQRRNLEHEVERGNDARRHLIQANLRLVVSIAKKYVGRGLSLLDLIQEGNIGLMRAV 150
Query: 338 ERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
E+FDH +G +FSTY +WIR+++++ +A R I++PV
Sbjct: 151 EKFDHRKGNRFSTYATWWIRQAVTRSIAEQGRTIRLPV 188
>gi|118594360|ref|ZP_01551707.1| RNA polymerase sigma factor [Methylophilales bacterium HTCC2181]
gi|118440138|gb|EAV46765.1| RNA polymerase sigma factor [Methylophilales bacterium HTCC2181]
Length = 654
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 4/139 (2%)
Query: 244 EMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWY----CREE 299
E+ + V +LE++K ++ + K +L A + + + +H+ G + E
Sbjct: 358 EIKSDKKYVESLEKLKHSILDQQSKLIALEELAGIPIKNFKEINRHMTTGEARAKRAKRE 417
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+I++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 418 MIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 477
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ +A AR I+IPV +
Sbjct: 478 ITRSIADQARTIRIPVHMI 496
>gi|441521299|ref|ZP_21002960.1| putative RNA polymerase sigma factor [Gordonia sihwensis NBRC
108236]
gi|441459131|dbj|GAC60921.1| putative RNA polymerase sigma factor [Gordonia sihwensis NBRC
108236]
Length = 465
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 225 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 284
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 285 TWWIRQAITRAMADQARTIRIPVHMVEV 312
>gi|86606677|ref|YP_475440.1| RNA polymerase sigma factor SigC [Synechococcus sp. JA-3-3Ab]
gi|86555219|gb|ABD00177.1| RNA polymerase sigma-70 factor family [Synechococcus sp. JA-3-3Ab]
Length = 364
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 8/155 (5%)
Query: 229 LNSRGRRLTIARNE-AEMSKGVQVVANLERIKTTLEKESGKAASLNCWA-------QAAG 280
L GR + R+E +++ VQ L ++ L+KE G+ +L WA + A
Sbjct: 50 LQEIGRVPLLGRDEEVALAQRVQDYMKLLDVRLRLQKELGREPTLAEWAARANQYPEWAN 109
Query: 281 VSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERF 340
++ L+Q G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ + E+F
Sbjct: 110 LTPEKLQQIQRIGKRAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKF 169
Query: 341 DHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
D +GY+FSTY +WIR+ I++ +A +R I++PV
Sbjct: 170 DPKKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 204
>gi|315502644|ref|YP_004081531.1| RpoD subfamily RNA polymerase sigma-70 subunit [Micromonospora sp.
L5]
gi|315409263|gb|ADU07380.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Micromonospora
sp. L5]
Length = 551
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 311 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 370
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 371 TWWIRQAITRAMADQARTIRIPV 393
>gi|2385506|dbj|BAA22190.1| RpoD2 protein [Synechococcus elongatus PCC 7942]
Length = 320
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E + VQ + L +T L G S WA A ++ L
Sbjct: 17 LQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLD 76
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ + G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD ++GYK
Sbjct: 77 REIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGVEKFDPSKGYK 136
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A+ +R I++P+
Sbjct: 137 FSTYAYWWIRQAITRAIAQQSRTIRLPI 164
>gi|254232809|ref|ZP_04926136.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis C]
gi|124601868|gb|EAY60878.1| RNA polymerase sigma factor sigA [Mycobacterium tuberculosis C]
Length = 528
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 63/93 (67%), Gaps = 6/93 (6%)
Query: 294 WYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+ +++ E+FD+T+GYK
Sbjct: 283 WICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLRLIRAVEKFDYTKGYK 342
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
FSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 343 FSTYATWWIRQAITRAMADQARTIRIPVHMVEV 375
>gi|392944009|ref|ZP_10309651.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
gi|392287303|gb|EIV93327.1| RNA polymerase sigma factor, sigma-70 family [Frankia sp. QA3]
Length = 392
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 152 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 211
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 212 TWWIRQAITRAIADQARTIRIPV 234
>gi|359689819|ref|ZP_09259820.1| RNA polymerase sigma-70 factor [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418748064|ref|ZP_13304356.1| RNA polymerase sigma factor RpoD [Leptospira licerasiae str.
MMD4847]
gi|418757607|ref|ZP_13313794.1| RNA polymerase sigma factor RpoD [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|384115384|gb|EIE01642.1| RNA polymerase sigma factor RpoD [Leptospira licerasiae serovar
Varillal str. VAR 010]
gi|404275133|gb|EJZ42447.1| RNA polymerase sigma factor RpoD [Leptospira licerasiae str.
MMD4847]
Length = 588
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 83/136 (61%), Gaps = 8/136 (5%)
Query: 244 EMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREELIK 302
E+ + ++ + N ER +E+E+G + + W + ER + Q ++EL+K
Sbjct: 305 EVREVIKDIRNNERKLRRMEQEAGSSVQEIKDWGEKIIKGEREIAQ-------AKKELVK 357
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++I++
Sbjct: 358 ANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITR 417
Query: 363 MVARHARGIKIPVPLF 378
++ AR I++PV +
Sbjct: 418 AISDQARTIRVPVHMI 433
>gi|320096194|ref|ZP_08027783.1| DNA-directed RNA polymerase sigma subunit RpoD [Actinomyces sp.
oral taxon 178 str. F0338]
gi|319976875|gb|EFW08629.1| DNA-directed RNA polymerase sigma subunit RpoD [Actinomyces sp.
oral taxon 178 str. F0338]
Length = 543
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 303 GQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 362
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 363 TWWIRQAITRAMADQARTIRIPVHMVEV 390
>gi|1553019|gb|AAC45101.1| primary sigma factor, partial [Borrelia garinii]
Length = 450
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 309
>gi|257056422|ref|YP_003134254.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
gi|256586294|gb|ACU97427.1| RNA polymerase, sigma 70 subunit, RpoD [Saccharomonospora viridis
DSM 43017]
Length = 439
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 66/97 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 190 RDLKWIVRDGERAKSHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYT 249
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+G+KFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 250 KGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 286
>gi|94971322|ref|YP_593370.1| sigma 38, RpoS [Candidatus Koribacter versatilis Ellin345]
gi|94553372|gb|ABF43296.1| RNA polymerase, sigma 70 subunit, RpoD [Candidatus Koribacter
versatilis Ellin345]
Length = 574
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 8/131 (6%)
Query: 256 ERIKTTLEKESGK-AASLNCWAQAAGVS-------ERVLKQHLAFGWYCREELIKSTRPL 307
E K L+K+S L Q AGVS +R + Q ++ELI++ L
Sbjct: 285 EETKKELKKQSRTLKGDLERMEQEAGVSIAELKRTQREIIQGDMDAEQAKKELIEANLRL 344
Query: 308 VLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARH 367
V+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A
Sbjct: 345 VVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQ 404
Query: 368 ARGIKIPVPLF 378
AR I+IPV +
Sbjct: 405 ARTIRIPVHMI 415
>gi|148266058|ref|YP_001232764.1| RpoD family RNA polymerase sigma factor [Geobacter uraniireducens
Rf4]
gi|146399558|gb|ABQ28191.1| RNA polymerase, sigma 70 subunit, RpoD [Geobacter uraniireducens
Rf4]
Length = 586
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 76/126 (60%), Gaps = 8/126 (6%)
Query: 254 NLERIKTTLEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLA 312
N E+ +E+ESG +A L+ A ER K + EL+++ LV+ +A
Sbjct: 313 NAEKKLKKIEQESGFQATELSTALLAIEEGERKAK-------LAKSELVEANLRLVVSIA 365
Query: 313 RNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIK 372
+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+
Sbjct: 366 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIR 425
Query: 373 IPVPLF 378
IPV +
Sbjct: 426 IPVHMI 431
>gi|419560742|ref|ZP_14098378.1| RNA polymerase sigma factor RpoD [Campylobacter coli 86119]
gi|380536660|gb|EIA61270.1| RNA polymerase sigma factor RpoD [Campylobacter coli 86119]
Length = 621
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 444 ISRAIADQARTIRIPIHMI 462
>gi|419588807|ref|ZP_14124624.1| RNA polymerase sigma factor RpoD [Campylobacter coli 317/04]
gi|380569296|gb|EIA91742.1| RNA polymerase sigma factor RpoD [Campylobacter coli 317/04]
Length = 621
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 444 ISRAIADQARTIRIPIHMI 462
>gi|419541375|ref|ZP_14080584.1| RNA polymerase sigma factor RpoD [Campylobacter coli Z163]
gi|419616105|ref|ZP_14149757.1| RNA polymerase sigma factor RpoD [Campylobacter coli Z156]
gi|380514629|gb|EIA40845.1| RNA polymerase sigma factor RpoD [Campylobacter coli Z163]
gi|380596129|gb|EIB16834.1| RNA polymerase sigma factor RpoD [Campylobacter coli Z156]
Length = 621
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 444 ISRAIADQARTIRIPIHMI 462
>gi|57168867|ref|ZP_00367997.1| RNA polymerase sigma factor RpoD [Campylobacter coli RM2228]
gi|305431982|ref|ZP_07401149.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter coli
JV20]
gi|419537076|ref|ZP_14076543.1| RNA polymerase sigma factor RpoD [Campylobacter coli 111-3]
gi|419539401|ref|ZP_14078733.1| RNA polymerase sigma factor RpoD [Campylobacter coli 90-3]
gi|419545010|ref|ZP_14083943.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2553]
gi|419545892|ref|ZP_14084658.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2680]
gi|419548700|ref|ZP_14087317.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2685]
gi|419550357|ref|ZP_14088865.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2688]
gi|419557112|ref|ZP_14095070.1| RNA polymerase sigma factor RpoD [Campylobacter coli 84-2]
gi|419557285|ref|ZP_14095200.1| RNA polymerase sigma factor RpoD [Campylobacter coli 80352]
gi|419563273|ref|ZP_14100733.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1091]
gi|419563852|ref|ZP_14101244.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1098]
gi|419567157|ref|ZP_14104388.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1148]
gi|419567543|ref|ZP_14104699.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1417]
gi|419574681|ref|ZP_14111384.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1909]
gi|419577684|ref|ZP_14114233.1| RNA polymerase sigma factor RpoD [Campylobacter coli 59-2]
gi|419579807|ref|ZP_14116202.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1948]
gi|419582147|ref|ZP_14118405.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1957]
gi|419583178|ref|ZP_14119365.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1961]
gi|419585571|ref|ZP_14121622.1| RNA polymerase sigma factor RpoD [Campylobacter coli 202/04]
gi|419590501|ref|ZP_14125869.1| RNA polymerase sigma factor RpoD [Campylobacter coli 37/05]
gi|419593902|ref|ZP_14129103.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9854]
gi|419595380|ref|ZP_14130484.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23336]
gi|419597802|ref|ZP_14132750.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23341]
gi|419599581|ref|ZP_14134430.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23342]
gi|419600564|ref|ZP_14135319.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23344]
gi|419602856|ref|ZP_14137424.1| RNA polymerase sigma factor RpoD [Campylobacter coli 151-9]
gi|419603907|ref|ZP_14138384.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9853]
gi|419607501|ref|ZP_14141803.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9860]
gi|419610915|ref|ZP_14144967.1| RNA polymerase sigma factor RpoD [Campylobacter coli H8]
gi|419613259|ref|ZP_14147109.1| RNA polymerase sigma factor RpoD [Campylobacter coli H9]
gi|419614874|ref|ZP_14148642.1| RNA polymerase sigma factor RpoD [Campylobacter coli H56]
gi|57019703|gb|EAL56389.1| RNA polymerase sigma factor RpoD [Campylobacter coli RM2228]
gi|304445066|gb|EFM37712.1| DNA-directed RNA polymerase sigma subunit RpoD [Campylobacter coli
JV20]
gi|380515141|gb|EIA41323.1| RNA polymerase sigma factor RpoD [Campylobacter coli 90-3]
gi|380516297|gb|EIA42432.1| RNA polymerase sigma factor RpoD [Campylobacter coli 111-3]
gi|380523553|gb|EIA49199.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2680]
gi|380524182|gb|EIA49804.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2553]
gi|380527143|gb|EIA52552.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2685]
gi|380530773|gb|EIA55829.1| RNA polymerase sigma factor RpoD [Campylobacter coli 2688]
gi|380533916|gb|EIA58778.1| RNA polymerase sigma factor RpoD [Campylobacter coli 84-2]
gi|380538614|gb|EIA63064.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1091]
gi|380542748|gb|EIA66976.1| RNA polymerase sigma factor RpoD [Campylobacter coli 80352]
gi|380543362|gb|EIA67561.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1098]
gi|380544399|gb|EIA68436.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1148]
gi|380547999|gb|EIA71912.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1417]
gi|380554828|gb|EIA78277.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1909]
gi|380556098|gb|EIA79364.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1948]
gi|380556309|gb|EIA79566.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1957]
gi|380556802|gb|EIA80036.1| RNA polymerase sigma factor RpoD [Campylobacter coli 59-2]
gi|380561906|gb|EIA84807.1| RNA polymerase sigma factor RpoD [Campylobacter coli 202/04]
gi|380563829|gb|EIA86656.1| RNA polymerase sigma factor RpoD [Campylobacter coli 1961]
gi|380568481|gb|EIA90949.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9854]
gi|380570783|gb|EIA93198.1| RNA polymerase sigma factor RpoD [Campylobacter coli 37/05]
gi|380572494|gb|EIA94740.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23341]
gi|380573744|gb|EIA95877.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23336]
gi|380573841|gb|EIA95968.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23342]
gi|380580206|gb|EIB01972.1| RNA polymerase sigma factor RpoD [Campylobacter coli 151-9]
gi|380581438|gb|EIB03163.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9853]
gi|380582879|gb|EIB04479.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 23344]
gi|380584221|gb|EIB05687.1| RNA polymerase sigma factor RpoD [Campylobacter coli LMG 9860]
gi|380588338|gb|EIB09472.1| RNA polymerase sigma factor RpoD [Campylobacter coli H9]
gi|380589184|gb|EIB10259.1| RNA polymerase sigma factor RpoD [Campylobacter coli H8]
gi|380592180|gb|EIB13097.1| RNA polymerase sigma factor RpoD [Campylobacter coli H56]
Length = 621
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 57/79 (72%)
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
+ KS LV+ +A+ Y G+PF DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++
Sbjct: 384 MAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQA 443
Query: 360 ISKMVARHARGIKIPVPLF 378
IS+ +A AR I+IP+ +
Sbjct: 444 ISRAIADQARTIRIPIHMI 462
>gi|1553013|gb|AAC45098.1| primary sigma factor, partial [Borrelia afzelii]
gi|1553015|gb|AAC45099.1| primary sigma factor, partial [Borrelia afzelii]
gi|1553021|gb|AAC45102.1| primary sigma factor, partial [Borrelia garinii]
Length = 450
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 309
>gi|118581452|ref|YP_902702.1| RpoD family RNA polymerase sigma factor [Pelobacter propionicus DSM
2379]
gi|118504162|gb|ABL00645.1| RNA polymerase, sigma 70 subunit, RpoD [Pelobacter propionicus DSM
2379]
Length = 582
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 76/118 (64%), Gaps = 8/118 (6%)
Query: 262 LEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGI 320
+E ESG KA+ L+ QA + E K +A + ELI++ LV+ +A+ Y G+
Sbjct: 317 IELESGFKASELSAALQA--IEEGECKARIA-----KSELIEANLRLVVSIAKKYTNRGL 369
Query: 321 PFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 370 QFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMI 427
>gi|1553029|gb|AAC45106.1| primary sigma factor, partial [Borrelia garinii]
Length = 450
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 309
>gi|1553023|gb|AAC45103.1| primary sigma factor, partial [Borrelia garinii]
Length = 450
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 25/167 (14%)
Query: 227 RALNSRGRRLTIARNEAEMSKGVQVVAN---------------LERIKTTLEKESGKAAS 271
R L GR LTIA E+ K +++ + LERI+ E K S
Sbjct: 153 RDLRVLGRDLTIAEKRIEIEKSLKLKEDAIKEQITEAQLAQKELERIEMYYEYPMDKIIS 212
Query: 272 LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNV 331
++ A G + + QH +++LIK+ LV+ +A+ Y G+ F DL+Q GN+
Sbjct: 213 MSEEI-AKG---KQMMQH------AKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNI 262
Query: 332 GVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+++ E+F++ RG+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 263 GLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMI 309
>gi|342215570|ref|ZP_08708217.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341586460|gb|EGS29860.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 366
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 71/112 (63%), Gaps = 5/112 (4%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFS 323
KE GK + L + A + K+ ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 102 KEIGKISLLTADEEVA-----IAKRMENGDELAKQELAEANLRLVVSIAKRYVGRGMSFL 156
Query: 324 DLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 157 DLIQEGNLGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 208
>gi|334564689|ref|ZP_08517680.1| RNA polymerase sigma factor [Corynebacterium bovis DSM 20582]
Length = 577
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 337 GRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 396
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 397 TWWIRQAITRAMADQARTIRIPV 419
>gi|379736693|ref|YP_005330199.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
gi|378784500|emb|CCG04169.1| RNA polymerase sigma factor rpoD [Blastococcus saxobsidens DD2]
Length = 450
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 210 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 269
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 270 TWWIRQAITRAMADQARTIRIPV 292
>gi|172040581|ref|YP_001800295.1| RNA polymerase sigma factor [Corynebacterium urealyticum DSM 7109]
gi|171851885|emb|CAQ04861.1| RNA polymerase sigma factor A [Corynebacterium urealyticum DSM
7109]
Length = 545
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 305 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 364
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 365 TWWIRQAITRAMADQARTIRIPVHMVEV 392
>gi|40353301|gb|AAR84414.1| essential primary sigma 70 factor [Frankia sp. ORS020607]
gi|40353303|gb|AAR84415.1| essential primary sigma 70 factor [Frankia sp. CcI3]
gi|40353305|gb|AAR84416.1| essential primary sigma 70 factor [Frankia sp. CeD]
Length = 217
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 29 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 88
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 89 TWWIRQAITRAIADQARTIRIPV 111
>gi|40353307|gb|AAR84417.1| essential primary sigma 70 factor [Frankia sp. ARgP5ag]
Length = 217
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 29 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 88
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 89 TWWIRQAITRAIADQARTIRIPV 111
>gi|422303174|ref|ZP_16390528.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
gi|389791889|emb|CCI12331.1| putative RNA polymerase sigma-C factor [Microcystis aeruginosa PCC
9806]
Length = 435
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 68/103 (66%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA AG+ L++ +A G +E++IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 175 WAHLAGLEVGELEEIIALGTRAKEQMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 234
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
+ E+FD T+GY+FSTY +WIR+ +++ +A +R I++PV +
Sbjct: 235 RAVEKFDPTKGYRFSTYAYWWIRQGMTRAIATQSRMIRLPVHI 277
>gi|357413573|ref|YP_004925309.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
flavogriseus ATCC 33331]
gi|320010942|gb|ADW05792.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
flavogriseus ATCC 33331]
Length = 358
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 106/203 (52%), Gaps = 26/203 (12%)
Query: 181 VPSKRKGKRKLKTA----RVSEESIETSLLSLPSEALQEGLKQPTIFSAERALNSRGR-R 235
+P++ + R +TA V EE +E L P G +F + L GR
Sbjct: 16 IPAQNRVTRHPETAGTPEPVLEEPVEPRELPGPRSRPDSGGPTSDLFR--QYLREIGRIP 73
Query: 236 LTIARNEAEMSKGVQVVANL---ERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
L A +E E+++ V+ A L ER+ T + +SG A L+ + +
Sbjct: 74 LLSAADEVELARRVE--AGLFAEERLAGTPDPDSGLAVDLD--------------RLVVM 117
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + LI++ LV+ +A+ Y G G+ DL+Q GN+G+++ E+FD+ RGYKFSTY
Sbjct: 118 GRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYA 177
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+++S+ +A AR I++PV
Sbjct: 178 TWWIRQAMSRALADQARTIRVPV 200
>gi|239626722|ref|ZP_04669753.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516868|gb|EEQ56734.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 374
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 59/80 (73%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
R+ L +S LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +W
Sbjct: 136 ARKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATWW 195
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 196 IRQAITRAIADQARTIRIPV 215
>gi|158337052|ref|YP_001518227.1| RNA polymerase sigma factor SigD [Acaryochloris marina MBIC11017]
gi|158307293|gb|ABW28910.1| RNA polymerase sigma-70 factor [Acaryochloris marina MBIC11017]
Length = 318
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 80/135 (59%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E K VQ + L+ I+ L ++ + + W+ AA +SE L++ L G + ++
Sbjct: 28 EEVTFGKQVQHLIKLQTIRDELAEQLERQPNDAEWSAAAKLSEAELQKALHEGEAAKRKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
+++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I
Sbjct: 88 VEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAI 147
Query: 361 SKMVARHARGIKIPV 375
++ +A R I++P+
Sbjct: 148 TRAIAEKGRTIRLPI 162
>gi|429730654|ref|ZP_19265300.1| RNA polymerase sigma factor RpoD [Corynebacterium durum F0235]
gi|429147092|gb|EKX90122.1| RNA polymerase sigma factor RpoD [Corynebacterium durum F0235]
Length = 487
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 247 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 306
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 307 TWWIRQAITRAMADQARTIRIPV 329
>gi|427733998|ref|YP_007053542.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
gi|427369039|gb|AFY52995.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Rivularia sp. PCC 7116]
Length = 322
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 235 RLTIARNEAEMSKGVQV--VANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292
R+ + +E E+ G QV L+ +K +L E + +L+ WA+ A + + L++ +
Sbjct: 24 RVPLLTHEEEILFGKQVHRATVLQSLKESLTNEFNRQPTLDEWAERAKLEPQDLEEAIEK 83
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +++++ LV+ +A+ Y + DL+Q G++G+ +G E+FD ++GY+FSTY
Sbjct: 84 GEVAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPSKGYRFSTYA 143
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 144 YWWIRQAITRAIAEKGRTIRLPI 166
>gi|68536171|ref|YP_250876.1| RNA polymerase sigma factor SigB [Corynebacterium jeikeium K411]
gi|260578869|ref|ZP_05846775.1| RNA polymerase principal sigma factor SigB [Corynebacterium
jeikeium ATCC 43734]
gi|68263770|emb|CAI37258.1| RNA polymerase sigma factor B [Corynebacterium jeikeium K411]
gi|258603016|gb|EEW16287.1| RNA polymerase principal sigma factor SigB [Corynebacterium
jeikeium ATCC 43734]
Length = 343
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 82/144 (56%), Gaps = 15/144 (10%)
Query: 236 LTIARNEAEMSKGVQVVANLERIKTTLEKES-GKAASLNCWAQAAGVSERVLKQHLAFGW 294
L A +E E+SK ++V E + + EK + K L A+ G
Sbjct: 59 LLTAEDEVELSKRIEVGLYSEYLLSNAEKLTRAKKRDLKVLARE--------------GK 104
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+T+G+KFSTY +
Sbjct: 105 AARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATW 164
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A +R I++PV L
Sbjct: 165 WIRQAITRGMADQSRTIRLPVHLV 188
>gi|309792450|ref|ZP_07686915.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG-6]
gi|308225522|gb|EFO79285.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Oscillochloris
trichoides DG6]
Length = 311
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 10/127 (7%)
Query: 261 TLEKESGKAASLNCWAQAA---------GVSER-VLKQHLAFGWYCREELIKSTRPLVLF 310
T ++E AA + +AA SER L+Q + G R +LI S LV+
Sbjct: 29 TFDQEQHLAAQIEAGREAARRLADEHPFTPSERWRLEQQVHAGANARAQLINSNLRLVVS 88
Query: 311 LARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARG 370
+AR Y+G G+ DL+Q G++G+++ ++FD +RG KFSTY YWIR+S+ + +A H R
Sbjct: 89 IARRYQGHGLSLLDLIQEGSLGLMRAVDKFDPSRGLKFSTYATYWIRQSVGRAIADHGRT 148
Query: 371 IKIPVPL 377
+++PV L
Sbjct: 149 VRLPVHL 155
>gi|289706929|ref|ZP_06503266.1| RNA polymerase sigma factor RpoD [Micrococcus luteus SK58]
gi|289556364|gb|EFD49718.1| RNA polymerase sigma factor RpoD [Micrococcus luteus SK58]
Length = 509
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 89/162 (54%), Gaps = 23/162 (14%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQA-------AGVSERVLKQH---- 289
++A + + V A + +K L K+ GK A LN + AG+ + QH
Sbjct: 196 DDAPVQQVVVAGATADPVKDYL-KQIGKVALLNAEQEVDLAMRIEAGLYAEHVVQHEASD 254
Query: 290 -----------LAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAE 338
+A G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E
Sbjct: 255 DYRERRDIQLIIADGRKAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVE 314
Query: 339 RFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV + +
Sbjct: 315 KFDYTKGFKFSTYATWWIRQAITRAMADQARTIRIPVHMVEV 356
>gi|433603618|ref|YP_007035987.1| RNA polymerase sigma factor rpoD [Saccharothrix espanaensis DSM
44229]
gi|407881471|emb|CCH29114.1| RNA polymerase sigma factor rpoD [Saccharothrix espanaensis DSM
44229]
Length = 435
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 195 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 254
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 255 TWWIRQAITRAMADQARTIRIPV 277
>gi|239917829|ref|YP_002957387.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Micrococcus luteus NCTC
2665]
gi|281413678|ref|ZP_06245420.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family protein [Micrococcus
luteus NCTC 2665]
gi|239839036|gb|ACS30833.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Micrococcus luteus NCTC
2665]
Length = 497
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 100/189 (52%), Gaps = 24/189 (12%)
Query: 215 EGLKQPTIFSAERALNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLN 273
E + T + ++ S+G + + ++A + + V A + +K L K+ GK A LN
Sbjct: 157 EAVTGTTAATGQKVAQSKGAFVMDDSEDDAPVQQVVVAGATADPVKDYL-KQIGKVALLN 215
Query: 274 CWAQA-------AGVSERVLKQH---------------LAFGWYCREELIKSTRPLVLFL 311
+ AG+ + QH +A G + L+++ LV+ L
Sbjct: 216 AEQEVDLAMRIEAGLYAEHVVQHEASDDYRERRDIQLIIADGRKAKNHLLEANLRLVVSL 275
Query: 312 ARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGI 371
A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I
Sbjct: 276 AKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTI 335
Query: 372 KIPVPLFLI 380
+IPV + +
Sbjct: 336 RIPVHMVEV 344
>gi|448823559|ref|YP_007416724.1| RNA polymerase sigma factor A [Corynebacterium urealyticum DSM
7111]
gi|448277056|gb|AGE36480.1| RNA polymerase sigma factor A [Corynebacterium urealyticum DSM
7111]
Length = 545
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 305 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 364
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 365 TWWIRQAITRAMADQARTIRIPVHMVEV 392
>gi|357588815|ref|ZP_09127481.1| RNA polymerase sigma factor SigB [Corynebacterium nuruki S6-4]
Length = 421
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 64/95 (67%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LK + G R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+
Sbjct: 172 RDLKVLVREGRAARTHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYA 231
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+GYKFSTY +WIR++I++ +A +R I++PV L
Sbjct: 232 KGYKFSTYATWWIRQAITRGMADQSRTIRLPVHLV 266
>gi|303327390|ref|ZP_07357831.1| RNA polymerase sigma-70 factor [Desulfovibrio sp. 3_1_syn3]
gi|302862330|gb|EFL85263.1| RNA polymerase sigma-70 factor [Desulfovibrio sp. 3_1_syn3]
Length = 589
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 60/83 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ELI+S LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 351 AKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 410
Query: 356 IRKSISKMVARHARGIKIPVPLF 378
IR++I++ +A AR I+IPV +
Sbjct: 411 IRQAITRAIADQARTIRIPVHMI 433
>gi|347522196|ref|YP_004779767.1| RNA polymerase sigma factor RpoD [Lactococcus garvieae ATCC 49156]
gi|385833581|ref|YP_005871356.1| RNA polymerase sigma factor RpoD [Lactococcus garvieae Lg2]
gi|420143841|ref|ZP_14651334.1| RNA polymerase sigma factor [Lactococcus garvieae IPLA 31405]
gi|343180764|dbj|BAK59103.1| RNA polymerase sigma factor RpoD [Lactococcus garvieae ATCC 49156]
gi|343182734|dbj|BAK61072.1| RNA polymerase sigma factor RpoD [Lactococcus garvieae Lg2]
gi|391856230|gb|EIT66774.1| RNA polymerase sigma factor [Lactococcus garvieae IPLA 31405]
Length = 460
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 60/81 (74%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FDHT+G+KFSTY +
Sbjct: 223 FAKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATW 282
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR++I++ +A AR I+IPV
Sbjct: 283 WIRQAITRAIADQARTIRIPV 303
>gi|256375646|ref|YP_003099306.1| RNA polymerase sigma factor [Actinosynnema mirum DSM 43827]
gi|255919949|gb|ACU35460.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Actinosynnema
mirum DSM 43827]
Length = 435
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 195 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 254
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 255 TWWIRQAITRAMADQARTIRIPV 277
>gi|40353297|gb|AAR84412.1| essential primary sigma 70 factor [Frankia sp. EaI-12]
Length = 409
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 169 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 228
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 229 TWWIRQAITRAIADQARTIRIPV 251
>gi|406880023|gb|EKD28466.1| hypothetical protein ACD_79C00291G0001 [uncultured bacterium]
Length = 568
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 69/111 (62%), Gaps = 14/111 (12%)
Query: 268 KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
KA ++ WA A R+ KQ E+I+S LV+ +A+ Y G+ F DL+Q
Sbjct: 305 KAEEIDKWATEA----RLAKQ----------EMIESNLRLVISIAKKYTNRGLSFLDLIQ 350
Query: 328 AGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 351 EGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI 401
>gi|358458850|ref|ZP_09169055.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357077812|gb|EHI87266.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 422
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 63/92 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R LKQ + G +++L+ + LV+ +A+ Y G G+ DL+Q GN+G+++ E+FD+
Sbjct: 173 RDLKQLVRDGEAAKQQLVSANLRLVVSVAKKYSGRGMTLLDLVQEGNLGLIRAVEKFDYA 232
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+GYKFSTY +WIR++I + +A AR I+IPV
Sbjct: 233 KGYKFSTYATWWIRQAIGRALADQARTIRIPV 264
>gi|50842515|ref|YP_055742.1| RNA polymerase sigma factor [Propionibacterium acnes KPA171202]
gi|289425323|ref|ZP_06427100.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes SK187]
gi|289427207|ref|ZP_06428923.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes J165]
gi|295130592|ref|YP_003581255.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes SK137]
gi|335053777|ref|ZP_08546607.1| RNA polymerase sigma factor RpoD [Propionibacterium sp. 434-HC2]
gi|354606991|ref|ZP_09024961.1| hypothetical protein HMPREF1003_01528 [Propionibacterium sp.
5_U_42AFAA]
gi|365962725|ref|YP_004944291.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes TypeIA2
P.acn31]
gi|365964967|ref|YP_004946532.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes TypeIA2
P.acn17]
gi|365973901|ref|YP_004955460.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes TypeIA2
P.acn33]
gi|386023975|ref|YP_005942279.1| RNA polymerase principal sigma factor HrdB [Propionibacterium acnes
266]
gi|387503404|ref|YP_005944633.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes 6609]
gi|407935427|ref|YP_006851069.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes C1]
gi|419421209|ref|ZP_13961437.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes PRP-38]
gi|50840117|gb|AAT82784.1| RNA polymerase principal sigma factor HrdB [Propionibacterium acnes
KPA171202]
gi|289154301|gb|EFD02989.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes SK187]
gi|289159676|gb|EFD07864.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes J165]
gi|291377120|gb|ADE00975.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes SK137]
gi|332675432|gb|AEE72248.1| RNA polymerase principal sigma factor HrdB [Propionibacterium acnes
266]
gi|333766277|gb|EGL43588.1| RNA polymerase sigma factor RpoD [Propionibacterium sp. 434-HC2]
gi|335277449|gb|AEH29354.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes 6609]
gi|353557106|gb|EHC26475.1| hypothetical protein HMPREF1003_01528 [Propionibacterium sp.
5_U_42AFAA]
gi|365739406|gb|AEW83608.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes TypeIA2
P.acn31]
gi|365741648|gb|AEW81342.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes TypeIA2
P.acn17]
gi|365743900|gb|AEW79097.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes TypeIA2
P.acn33]
gi|379977700|gb|EIA11025.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes PRP-38]
gi|407904008|gb|AFU40838.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes C1]
gi|456739783|gb|EMF64322.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes FZ1/2/0]
Length = 506
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 266 GKVAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 325
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WI+++I++ +A AR I+IPV + +
Sbjct: 326 TWWIKQAITRAMADQARTIRIPVHMVEV 353
>gi|421766921|ref|ZP_16203688.1| RNA polymerase sigma factor RpoD [Lactococcus garvieae DCC43]
gi|407624577|gb|EKF51315.1| RNA polymerase sigma factor RpoD [Lactococcus garvieae DCC43]
Length = 460
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 60/81 (74%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FDHT+G+KFSTY +
Sbjct: 223 FAKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDKFDHTKGFKFSTYATW 282
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR++I++ +A AR I+IPV
Sbjct: 283 WIRQAITRAIADQARTIRIPV 303
>gi|357510769|ref|XP_003625673.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
gi|355500688|gb|AES81891.1| RNA polymerase sigma factor rpoD [Medicago truncatula]
Length = 557
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 83/141 (58%)
Query: 234 RRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG 293
++L E+++ +Q + L+ K L+ G+ +L WA G+S R L++ L G
Sbjct: 255 KQLLSIEEESQLIAQIQDLFKLKETKIKLQSHFGREPTLAEWADGVGLSCRDLQKRLHCG 314
Query: 294 WYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQ 353
+++LI + LV+ +A+ Y+G G+ DLLQ G++G+++ E+F G +FSTY
Sbjct: 315 NRSKDKLIHANLRLVVHIAKYYQGRGLSLQDLLQEGSMGLMRSVEKFKPQAGCRFSTYAY 374
Query: 354 YWIRKSISKMVARHARGIKIP 374
+WIR++I + + H++ I++P
Sbjct: 375 WWIRQTIRRALFLHSKTIRLP 395
>gi|346310634|ref|ZP_08852649.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
gi|345897589|gb|EGX67506.1| hypothetical protein HMPREF9452_00518 [Collinsella tanakaei YIT
12063]
Length = 443
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
Query: 249 VQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE------RVLKQHLAFGWYCREELIK 302
V ++ + + ++ E+G AS A AG E R L + G ++ LI
Sbjct: 152 VDLLTAADEVDLAMKIEAGLEASNKLEAADAGEIELTRAEMRRLTRVEQVGLEAKQALIS 211
Query: 303 STRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISK 362
+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++
Sbjct: 212 ANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYEKGFKFSTYATWWIRQAITR 271
Query: 363 MVARHARGIKIPVPLF 378
+A AR I+IPV +
Sbjct: 272 AIADQARTIRIPVHMV 287
>gi|322421611|ref|YP_004200834.1| RpoD subfamily RNA polymerase sigma-70 factor [Geobacter sp. M18]
gi|320127998|gb|ADW15558.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geobacter sp.
M18]
Length = 583
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 79/126 (62%), Gaps = 10/126 (7%)
Query: 253 ANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLA 312
ANL++I E+ESG AS A A + E K LA + EL+++ LV+ +A
Sbjct: 313 ANLKKI----EQESGFKASELANALLA-IEEGEHKAKLA-----KSELVEANLRLVVSIA 362
Query: 313 RNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIK 372
+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+
Sbjct: 363 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIR 422
Query: 373 IPVPLF 378
IPV +
Sbjct: 423 IPVHMI 428
>gi|212702263|ref|ZP_03310391.1| hypothetical protein DESPIG_00274 [Desulfovibrio piger ATCC 29098]
gi|212674326|gb|EEB34809.1| RNA polymerase sigma factor RpoD [Desulfovibrio piger ATCC 29098]
Length = 589
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 60/83 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ELI+S LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 351 AKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 410
Query: 356 IRKSISKMVARHARGIKIPVPLF 378
IR++I++ +A AR I+IPV +
Sbjct: 411 IRQAITRAIADQARTIRIPVHMI 433
>gi|158313963|ref|YP_001506471.1| RpoD family RNA polymerase sigma factor [Frankia sp. EAN1pec]
gi|158109368|gb|ABW11565.1| RNA polymerase, sigma 70 subunit, RpoD family [Frankia sp. EAN1pec]
Length = 409
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 169 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 228
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 229 TWWIRQAITRAIADQARTIRIPV 251
>gi|189424079|ref|YP_001951256.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geobacter lovleyi
SZ]
gi|189420338|gb|ACD94736.1| RNA polymerase, sigma 70 subunit, RpoD family [Geobacter lovleyi
SZ]
Length = 586
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 77/126 (61%), Gaps = 8/126 (6%)
Query: 254 NLERIKTTLEKESG-KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLA 312
N R T +E+ESG KA L+ +A E H A + ELI++ LV+ +A
Sbjct: 313 NAARKLTKVEQESGFKATELSKAIRAIREGE-----HKA--RIAKSELIEANLRLVVSIA 365
Query: 313 RNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIK 372
+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+
Sbjct: 366 KKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIR 425
Query: 373 IPVPLF 378
IPV +
Sbjct: 426 IPVHMI 431
>gi|435854555|ref|YP_007315874.1| RNA polymerase sigma factor, sigma-70 family [Halobacteroides
halobius DSM 5150]
gi|433670966|gb|AGB41781.1| RNA polymerase sigma factor, sigma-70 family [Halobacteroides
halobius DSM 5150]
Length = 374
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 60/81 (74%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y +++L + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +
Sbjct: 136 YAKQKLAAANLRLVVSIAKKYVGRGMLFLDLIQEGNLGLIKAVEKFDYTKGYKFSTYATW 195
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR++I++ +A AR I++PV
Sbjct: 196 WIRQAITRSIADQARTIRVPV 216
>gi|386385680|ref|ZP_10070942.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
tsukubaensis NRRL18488]
gi|385666870|gb|EIF90351.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces
tsukubaensis NRRL18488]
Length = 333
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 65/103 (63%)
Query: 276 AQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQ 335
+A G L+ A G ++E I+S LV+ +AR Y G+P DL+Q GN G+++
Sbjct: 77 GEAGGAGREELEALAAAGERAKDEFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVR 136
Query: 336 GAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
E+FD+ +G+KFSTY +WIR++I++ +A +R I++PV L
Sbjct: 137 AVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLV 179
>gi|332709863|ref|ZP_08429819.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332351234|gb|EGJ30818.1| RNA polymerase, sigma subunit, RpsC/SigC [Moorea producens 3L]
gi|332651114|gb|AEE81158.1| putative RNA polymerase sigma subunit [Moorea producens 3L]
Length = 417
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 67/101 (66%)
Query: 275 WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVL 334
WA+ A ++ + L+Q A G +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+
Sbjct: 157 WAELAELTSKELEQVQAEGLQAKEHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 216
Query: 335 QGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+ E+FD T+GY+FSTY +WIR+ I++ +A +R I++PV
Sbjct: 217 RAVEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 257
>gi|323454681|gb|EGB10551.1| hypothetical protein AURANDRAFT_23034 [Aureococcus anophagefferens]
Length = 388
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAA---SLNCWAQAAGVSERVLKQHLA 291
RL A E +++ VQ + + E ++ TL +E G+AA WA+A VS L+ +
Sbjct: 69 RLLNADEEVALAREVQRLRSYEDVRATLGEELGRAAEDVGEAAWARALAVSADDLRAARS 128
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G R L + LV+ +A+ YR G+ DLLQ G G+ + ERFD RG++FSTY
Sbjct: 129 RGVDARSTLTSANLRLVVSIAKRYRFCGLAQEDLLQEGAFGLSRAVERFDPERGFRFSTY 188
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR+++ + A +R I++P
Sbjct: 189 ATFWIRQAVLRACAEQSRVIRLPA 212
>gi|271963879|ref|YP_003338075.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
gi|270507054|gb|ACZ85332.1| RNA polymerase sigma factor RpoD [Streptosporangium roseum DSM
43021]
Length = 392
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++ LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 153 GTRAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 212
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 213 TWWIRQAITRAIADQARTIRIPV 235
>gi|225018167|ref|ZP_03707359.1| hypothetical protein CLOSTMETH_02104 [Clostridium methylpentosum
DSM 5476]
gi|224949164|gb|EEG30373.1| hypothetical protein CLOSTMETH_02104 [Clostridium methylpentosum
DSM 5476]
Length = 372
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 72/115 (62%), Gaps = 7/115 (6%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK L + L Q ++ G Y R+ L ++ LV+ +A+ Y G G+ F
Sbjct: 108 KEIGKVPLLTAEEEID------LAQKMSAGDPYARKRLSEANLRLVVSIAKRYVGRGMQF 161
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 162 LDLIQEGNLGLIKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHM 216
>gi|429730663|ref|ZP_19265309.1| Sigma-70 region 2 [Corynebacterium durum F0235]
gi|429147101|gb|EKX90131.1| Sigma-70 region 2 [Corynebacterium durum F0235]
Length = 329
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 67/99 (67%), Gaps = 4/99 (4%)
Query: 284 RVLKQHLAF----GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAER 339
R +K+ L G + R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+
Sbjct: 76 RAMKRDLKVLARQGKHARSHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEK 135
Query: 340 FDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
FD+T+G+KFSTY +WIR++I++ +A +R I++PV L
Sbjct: 136 FDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLV 174
>gi|25028360|ref|NP_738414.1| RNA polymerase sigma factor [Corynebacterium efficiens YS-314]
gi|23493645|dbj|BAC18614.1| sigma factor SigA [Corynebacterium efficiens YS-314]
Length = 506
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 266 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 325
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 326 TWWIRQAITRAMADQARTIRIPVHMVEV 353
>gi|422011592|ref|ZP_16358389.1| RNA polymerase sigma factor RpoD [Actinomyces georgiae F0490]
gi|394764503|gb|EJF46279.1| RNA polymerase sigma factor RpoD [Actinomyces georgiae F0490]
Length = 531
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 291 GQQAKNHLLEANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 350
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 351 TWWIRQAITRAMADQARTIRIPVHMVEV 378
>gi|317484461|ref|ZP_07943373.1| RNA polymerase sigma factor RpoD [Bilophila wadsworthia 3_1_6]
gi|345888327|ref|ZP_08839423.1| hypothetical protein HMPREF0178_02197 [Bilophila sp. 4_1_30]
gi|316924285|gb|EFV45459.1| RNA polymerase sigma factor RpoD [Bilophila wadsworthia 3_1_6]
gi|345040855|gb|EGW45076.1| hypothetical protein HMPREF0178_02197 [Bilophila sp. 4_1_30]
Length = 590
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 60/83 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ELI+S LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 352 AKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 411
Query: 356 IRKSISKMVARHARGIKIPVPLF 378
IR++I++ +A AR I+IPV +
Sbjct: 412 IRQAITRAIADQARTIRIPVHMI 434
>gi|358463522|ref|ZP_09173562.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
gi|357070106|gb|EHI79876.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp. CN3]
Length = 392
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 152 GNVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 211
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 212 TWWIRQAITRAIADQARTIRIPV 234
>gi|389844090|ref|YP_006346170.1| sigma-70 family RNA polymerase sigma factor [Mesotoga prima
MesG1.Ag.4.2]
gi|387858836|gb|AFK06927.1| RNA polymerase sigma factor, sigma-70 family [Mesotoga prima
MesG1.Ag.4.2]
Length = 416
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 58/80 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+EELI + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD +GYKFSTY +W
Sbjct: 171 AKEELITANLRLVVSIAKRYIGRGLTFLDLIQEGNIGLIKAVEKFDWKKGYKFSTYATWW 230
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I++PV
Sbjct: 231 IRQAITRAIADQARTIRVPV 250
>gi|299144149|ref|ZP_07037229.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 386
str. F0131]
gi|298518634|gb|EFI42373.1| RNA polymerase sigma factor RpoD [Peptoniphilus sp. oral taxon 386
str. F0131]
Length = 383
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 71/113 (62%), Gaps = 7/113 (6%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFG-WYCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK L G E + Q + G ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 119 KEIGKIPLL------TGDEEIDIAQRMEVGDEDAKQELAEANLRLVVSIAKRYVGRGMSF 172
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 173 LDLIQEGNLGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 225
>gi|312139434|ref|YP_004006770.1| sigma-70 factor siga [Rhodococcus equi 103S]
gi|325672677|ref|ZP_08152373.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
gi|311888773|emb|CBH48085.1| sigma-70 factor SigA [Rhodococcus equi 103S]
gi|325556554|gb|EGD26220.1| RNA polymerase principal sigma factor SigA [Rhodococcus equi ATCC
33707]
Length = 459
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 219 GNRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 278
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 279 TWWIRQAITRAMADQARTIRIPVHMVEV 306
>gi|111221463|ref|YP_712257.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
gi|111148995|emb|CAJ60675.1| RNA polymerase essential primary sigma 70 factor [Frankia alni
ACN14a]
Length = 409
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 169 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 228
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 229 TWWIRQAITRAIADQARTIRIPV 251
>gi|86739990|ref|YP_480390.1| sigma 38 [Frankia sp. CcI3]
gi|86566852|gb|ABD10661.1| RNA polymerase, sigma 70 subunit, RpoD [Frankia sp. CcI3]
Length = 409
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 169 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 228
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 229 TWWIRQAITRAIADQARTIRIPV 251
>gi|335429392|ref|ZP_08556290.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
gi|334889402|gb|EGM27687.1| RNA polymerase sigma factor RpoD [Haloplasma contractile SSD-17B]
Length = 398
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 249 VQVVANLERIKTTLEKESGKAAS-----LNCWAQAAGVSERVLKQHLAFGWYCREELIKS 303
V++++ E I+ + E+G A L +ER LK + G + L+++
Sbjct: 108 VELLSADEEIRYAKDIEAGLMADEQIKDLKAEDALDADTERQLKDLIMKGEISKMRLVEA 167
Query: 304 TRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKM 363
LV+ +A+ + G G+ F DL+Q GN+G+++ ++FD+ RGYKFSTY +WIR++I++
Sbjct: 168 NLRLVVSIAKRHVGRGMLFLDLIQEGNMGLMKAVDKFDYRRGYKFSTYATWWIRQAITRA 227
Query: 364 VARHARGIKIPV 375
+A AR I+IPV
Sbjct: 228 IADQARTIRIPV 239
>gi|224370025|ref|YP_002604189.1| protein RpoD [Desulfobacterium autotrophicum HRM2]
gi|223692742|gb|ACN16025.1| RpoD [Desulfobacterium autotrophicum HRM2]
Length = 618
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 60/84 (71%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
Y + EL+++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +
Sbjct: 379 YAKSELVRANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATW 438
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A AR I+IPV +
Sbjct: 439 WIRQAITRAIADQARTIRIPVHMI 462
>gi|220904357|ref|YP_002479669.1| RpoD subfamily RNA polymerase sigma-70 subunit [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868656|gb|ACL48991.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 589
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 60/83 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ELI+S LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 351 AKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 410
Query: 356 IRKSISKMVARHARGIKIPVPLF 378
IR++I++ +A AR I+IPV +
Sbjct: 411 IRQAITRAIADQARTIRIPVHMI 433
>gi|1149588|emb|CAA89984.1| SigA sigma factor [Corynebacterium glutamicum]
Length = 497
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 257 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 316
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 317 TWWIRQAITRAMADQARTIRIPVHMVEV 344
>gi|428300988|ref|YP_007139294.1| RpoD subfamily RNA polymerase sigma-70 subunit [Calothrix sp. PCC
6303]
gi|428237532|gb|AFZ03322.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Calothrix sp. PCC
6303]
Length = 327
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 76/129 (58%)
Query: 247 KGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRP 306
K VQ + L K L K+ + +L WA E L + G ++++I++
Sbjct: 43 KQVQQMMILVEAKEALAKKLQREPTLEEWAIQVNQPEAELNLTVHQGKRAKQKMIEANLR 102
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD TRGYKFSTY +WIR++I++ +A+
Sbjct: 103 LVVAIAKKYQKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQ 162
Query: 367 HARGIKIPV 375
R I++P+
Sbjct: 163 QGRTIRLPI 171
>gi|443309777|ref|ZP_21039464.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
gi|442780170|gb|ELR90376.1| RNA polymerase sigma factor, cyanobacterial RpoD-like family
[Synechocystis sp. PCC 7509]
Length = 319
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 89/144 (61%), Gaps = 3/144 (2%)
Query: 235 RLTIARNEAEM--SKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSE-RVLKQHLA 291
R+ + +E E+ K VQ ++ L+ ++ L E G+ + + WA+A+ +++ L + +A
Sbjct: 20 RVPLLTHEQEILYGKQVQRLSALQTVREALLAEYGQEPTPDEWAKASDLADSEELAKIIA 79
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G + +++++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY
Sbjct: 80 AGELAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTY 139
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A R I++P+
Sbjct: 140 AYWWIRQAITRAIAEKGRTIRLPI 163
>gi|291453499|ref|ZP_06592889.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|359149807|ref|ZP_09182739.1| RNA polymerase principal sigma factor hrdD [Streptomyces sp. S4]
gi|421740810|ref|ZP_16179040.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
gi|17366575|sp|Q59914.1|HRDD_STRGR RecName: Full=RNA polymerase principal sigma factor HrdD
gi|510454|emb|CAA56305.1| sigma factor [Streptomyces griseus]
gi|291356448|gb|EFE83350.1| RNA polymerase sigma factor [Streptomyces albus J1074]
gi|406690772|gb|EKC94563.1| RNA polymerase sigma factor, sigma-70 family [Streptomyces sp. SM8]
Length = 332
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 70/113 (61%)
Query: 266 SGKAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDL 325
+GK + +AG S L+ +A G ++ I+S LV+ +AR Y G+P DL
Sbjct: 66 AGKILDGEVDSDSAGASREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDL 125
Query: 326 LQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+Q GN G+++ E+FD+ +G+KFSTY +WIR++I++ +A +R I++PV L
Sbjct: 126 IQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLV 178
>gi|456969936|gb|EMG10820.1| RNA polymerase sigma factor RpoD [Leptospira interrogans serovar
Grippotyphosa str. LT2186]
Length = 336
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 83/139 (59%), Gaps = 8/139 (5%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAA-SLNCWAQAAGVSERVLKQHLAFGWYCREE 299
N E+ + ++ + N ER +E+E+G + W + ER + Q ++E
Sbjct: 49 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKE 101
Query: 300 LIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKS 359
L+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++
Sbjct: 102 LVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQA 161
Query: 360 ISKMVARHARGIKIPVPLF 378
I++ ++ AR I++PV +
Sbjct: 162 ITRAISDQARTIRVPVHMI 180
>gi|78357095|ref|YP_388544.1| RpoD subfamily RNA polymerase sigma-70 subunit [Desulfovibrio
alaskensis G20]
gi|78219500|gb|ABB38849.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfovibrio
alaskensis G20]
Length = 589
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 72/119 (60%), Gaps = 7/119 (5%)
Query: 267 GKAASLN-----CWAQAAGVSERV--LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLG 319
GK LN C + E + +K+ + ++ELI+S LV+ +A+ Y G
Sbjct: 315 GKMEILNRLQEKCCHNVTDLEEVLWRIKRGNSHAMRAKQELIRSNLRLVVSIAKKYTNRG 374
Query: 320 IPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 375 LQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMI 433
>gi|422568667|ref|ZP_16644285.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL002PA2]
gi|314960003|gb|EFT04105.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL002PA2]
Length = 511
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 271 GKVAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 330
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WI+++I++ +A AR I+IPV + +
Sbjct: 331 TWWIKQAITRAMADQARTIRIPVHMVEV 358
>gi|203288141|ref|YP_002223156.1| RNA polymerase sigma-70 factor [Borrelia recurrentis A1]
gi|201085361|gb|ACH94935.1| RNA polymerase sigma-70 factor [Borrelia recurrentis A1]
Length = 630
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 88/153 (57%), Gaps = 15/153 (9%)
Query: 226 ERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
E++LN R + EA++++ LERI+ E K S+ SE +
Sbjct: 335 EKSLNIREDLIKEQITEAQLAQ-----KELERIEMYYEYPMDKIISM---------SEEI 380
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 381 LKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRG 439
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 440 FKFSTYATWWIRQAITRSISDQARTIRVPVHMI 472
>gi|23308878|ref|NP_601117.2| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 13032]
gi|21324681|dbj|BAB99304.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) (SigA)
[Corynebacterium glutamicum ATCC 13032]
gi|385144017|emb|CCH25056.1| RNA polymerase sigma factor [Corynebacterium glutamicum K051]
Length = 498
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 258 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 317
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 318 TWWIRQAITRAMADQARTIRIPVHMVEV 345
>gi|72162538|ref|YP_290195.1| RNA polymerase sigma factor [Thermobifida fusca YX]
gi|71916270|gb|AAZ56172.1| carbamoyl-phosphate synthase L chain, ATP-binding [Thermobifida
fusca YX]
Length = 616
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 376 GKRAKKHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 435
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 436 TWWIRQAITRAMADQARTIRIPV 458
>gi|386843002|ref|YP_006248060.1| RNA polymerase sigma factor RpoD [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374103303|gb|AEY92187.1| RNA polymerase sigma factor RpoD [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451796293|gb|AGF66342.1| RNA polymerase sigma factor RpoD [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 513
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 273 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 332
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 333 TWWIRQAITRAMADQARTIRIPV 355
>gi|335051732|ref|ZP_08544643.1| RNA polymerase sigma factor RpoD [Propionibacterium sp. 409-HC1]
gi|342211495|ref|ZP_08704220.1| RNA polymerase sigma factor RpoD [Propionibacterium sp. CC003-HC2]
gi|333766020|gb|EGL43344.1| RNA polymerase sigma factor RpoD [Propionibacterium sp. 409-HC1]
gi|340767039|gb|EGR89564.1| RNA polymerase sigma factor RpoD [Propionibacterium sp. CC003-HC2]
Length = 506
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 266 GKVAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 325
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WI+++I++ +A AR I+IPV + +
Sbjct: 326 TWWIKQAITRAMADQARTIRIPVHMVEV 353
>gi|422493298|ref|ZP_16569598.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL086PA1]
gi|313838731|gb|EFS76445.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL086PA1]
Length = 511
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 271 GKVAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 330
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WI+++I++ +A AR I+IPV + +
Sbjct: 331 TWWIKQAITRAMADQARTIRIPVHMVEV 358
>gi|417929090|ref|ZP_12572474.1| sigma-70, region 4 [Propionibacterium acnes SK182]
gi|422384905|ref|ZP_16465040.1| RNA polymerase principal sigma factor HrdB [Propionibacterium acnes
HL096PA3]
gi|422388477|ref|ZP_16468580.1| RNA polymerase principal sigma factor HrdB [Propionibacterium acnes
HL096PA2]
gi|422393099|ref|ZP_16473152.1| RNA polymerase principal sigma factor HrdB [Propionibacterium acnes
HL099PA1]
gi|422396444|ref|ZP_16476475.1| RNA polymerase principal sigma factor HrdB [Propionibacterium acnes
HL097PA1]
gi|422424488|ref|ZP_16501438.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL043PA1]
gi|422428082|ref|ZP_16504993.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL087PA1]
gi|422431000|ref|ZP_16507879.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL072PA2]
gi|422433190|ref|ZP_16510058.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL059PA2]
gi|422435741|ref|ZP_16512598.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL083PA2]
gi|422438075|ref|ZP_16514919.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL092PA1]
gi|422443554|ref|ZP_16520352.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL002PA1]
gi|422445724|ref|ZP_16522471.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL027PA1]
gi|422449073|ref|ZP_16525798.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL036PA3]
gi|422451836|ref|ZP_16528537.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL030PA2]
gi|422454443|ref|ZP_16531123.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL087PA3]
gi|422457369|ref|ZP_16534031.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL030PA1]
gi|422461885|ref|ZP_16538509.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL038PA1]
gi|422474754|ref|ZP_16551218.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL056PA1]
gi|422478082|ref|ZP_16554505.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL007PA1]
gi|422480624|ref|ZP_16557027.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL063PA1]
gi|422483123|ref|ZP_16559512.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL036PA1]
gi|422485397|ref|ZP_16561759.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL043PA2]
gi|422488646|ref|ZP_16564975.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL013PA2]
gi|422490747|ref|ZP_16567062.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL020PA1]
gi|422498520|ref|ZP_16574792.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL002PA3]
gi|422501319|ref|ZP_16577573.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL063PA2]
gi|422502326|ref|ZP_16578571.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL027PA2]
gi|422506278|ref|ZP_16582501.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL036PA2]
gi|422508108|ref|ZP_16584289.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL046PA2]
gi|422510648|ref|ZP_16586794.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL059PA1]
gi|422513373|ref|ZP_16589496.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL087PA2]
gi|422516255|ref|ZP_16592364.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL110PA2]
gi|422518621|ref|ZP_16594689.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL074PA1]
gi|422521876|ref|ZP_16597906.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL045PA1]
gi|422529698|ref|ZP_16605664.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL053PA1]
gi|422532358|ref|ZP_16608304.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL110PA1]
gi|422534343|ref|ZP_16610267.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL072PA1]
gi|422537358|ref|ZP_16613246.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL078PA1]
gi|422539451|ref|ZP_16615324.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL013PA1]
gi|422542888|ref|ZP_16618738.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL037PA1]
gi|422545423|ref|ZP_16621253.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL082PA1]
gi|422547820|ref|ZP_16623636.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL050PA3]
gi|422549684|ref|ZP_16625484.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL050PA1]
gi|422552248|ref|ZP_16628039.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL005PA3]
gi|422554189|ref|ZP_16629961.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL005PA2]
gi|422558218|ref|ZP_16633958.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL025PA2]
gi|422560967|ref|ZP_16636654.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL005PA1]
gi|422563063|ref|ZP_16638740.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL046PA1]
gi|422569942|ref|ZP_16645549.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL067PA1]
gi|422578684|ref|ZP_16654208.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL005PA4]
gi|313764456|gb|EFS35820.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL013PA1]
gi|313772162|gb|EFS38128.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL074PA1]
gi|313792142|gb|EFS40243.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL110PA1]
gi|313801905|gb|EFS43139.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL110PA2]
gi|313807517|gb|EFS46004.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL087PA2]
gi|313815995|gb|EFS53709.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL059PA1]
gi|313818559|gb|EFS56273.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL046PA2]
gi|313820326|gb|EFS58040.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL036PA1]
gi|313822867|gb|EFS60581.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL036PA2]
gi|313825201|gb|EFS62915.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL063PA1]
gi|313827777|gb|EFS65491.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL063PA2]
gi|313830354|gb|EFS68068.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL007PA1]
gi|313833727|gb|EFS71441.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL056PA1]
gi|314915449|gb|EFS79280.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL005PA4]
gi|314918269|gb|EFS82100.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL050PA1]
gi|314920081|gb|EFS83912.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL050PA3]
gi|314925214|gb|EFS89045.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL036PA3]
gi|314931603|gb|EFS95434.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL067PA1]
gi|314955756|gb|EFT00156.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL027PA1]
gi|314958170|gb|EFT02273.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL002PA1]
gi|314962801|gb|EFT06901.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL082PA1]
gi|314967832|gb|EFT11931.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL037PA1]
gi|314973358|gb|EFT17454.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL053PA1]
gi|314976037|gb|EFT20132.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL045PA1]
gi|314978425|gb|EFT22519.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL072PA2]
gi|314983942|gb|EFT28034.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL005PA1]
gi|314988126|gb|EFT32217.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL005PA2]
gi|314989931|gb|EFT34022.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL005PA3]
gi|315080641|gb|EFT52617.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL078PA1]
gi|315084314|gb|EFT56290.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL027PA2]
gi|315085657|gb|EFT57633.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL002PA3]
gi|315088921|gb|EFT60897.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL072PA1]
gi|315095903|gb|EFT67879.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL038PA1]
gi|315098534|gb|EFT70510.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL059PA2]
gi|315101108|gb|EFT73084.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL046PA1]
gi|315105654|gb|EFT77630.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL030PA1]
gi|315108328|gb|EFT80304.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL030PA2]
gi|327326185|gb|EGE67975.1| RNA polymerase principal sigma factor HrdB [Propionibacterium acnes
HL096PA2]
gi|327330255|gb|EGE72004.1| RNA polymerase principal sigma factor HrdB [Propionibacterium acnes
HL097PA1]
gi|327331940|gb|EGE73677.1| RNA polymerase principal sigma factor HrdB [Propionibacterium acnes
HL096PA3]
gi|327443141|gb|EGE89795.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL013PA2]
gi|327445925|gb|EGE92579.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL043PA2]
gi|327448095|gb|EGE94749.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL043PA1]
gi|327450784|gb|EGE97438.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL087PA3]
gi|327453139|gb|EGE99793.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL092PA1]
gi|327453872|gb|EGF00527.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL083PA2]
gi|328753472|gb|EGF67088.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL020PA1]
gi|328754202|gb|EGF67818.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL087PA1]
gi|328754546|gb|EGF68162.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL025PA2]
gi|328760854|gb|EGF74420.1| RNA polymerase principal sigma factor HrdB [Propionibacterium acnes
HL099PA1]
gi|340773213|gb|EGR95705.1| sigma-70, region 4 [Propionibacterium acnes SK182]
Length = 511
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 271 GKVAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 330
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WI+++I++ +A AR I+IPV + +
Sbjct: 331 TWWIKQAITRAMADQARTIRIPVHMVEV 358
>gi|12958492|gb|AAK09321.1|AF320817_2 sigma factor SigA [[Brevibacterium] flavum]
Length = 498
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 258 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 317
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 318 TWWIRQAITRAMADQARTIRIPVHMVEV 345
>gi|374853356|dbj|BAL56266.1| RNA polymerase primary sigma factor RpoD [uncultured delta
proteobacterium]
Length = 613
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 78/134 (58%), Gaps = 7/134 (5%)
Query: 252 VANLERIKTTLEKESGKAASLNCWAQAAGVS-------ERVLKQHLAFGWYCREELIKST 304
V LE + T + S K ++ A+ GV+ R +++ + EL+++
Sbjct: 324 VQELEELVETAKASSAKVRTVEEKAKEHGVTLEQLRKTYREIREGERMAEKAKAELVEAN 383
Query: 305 RPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMV 364
LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +WIR++I++ +
Sbjct: 384 LRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAI 443
Query: 365 ARHARGIKIPVPLF 378
A AR I+IPV +
Sbjct: 444 ADQARTIRIPVHMI 457
>gi|37520903|ref|NP_924280.1| RNA polymerase sigma factor RpoD [Gloeobacter violaceus PCC 7421]
gi|35211898|dbj|BAC89275.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus PCC 7421]
Length = 350
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 70/108 (64%)
Query: 268 KAASLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQ 327
+A + W ++A ++ + + G + L+K+ LV+ +A+ Y+G G+ DL+Q
Sbjct: 81 QAVAAESWLESANLTPQQWSTIVREGERAKAHLVKANLRLVVSVAKKYQGRGLHLLDLIQ 140
Query: 328 AGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
G +G+++ AE+FD+TRG+KFSTY +WIR+ I++ +A AR I++PV
Sbjct: 141 EGTLGLIRAAEKFDYTRGFKFSTYATWWIRQGITRAIAMQARTIRLPV 188
>gi|422495786|ref|ZP_16572073.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL025PA1]
gi|313812944|gb|EFS50658.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL025PA1]
Length = 511
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 271 GKVAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 330
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WI+++I++ +A AR I+IPV + +
Sbjct: 331 TWWIKQAITRAMADQARTIRIPVHMVEV 358
>gi|293376344|ref|ZP_06622581.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325843397|ref|ZP_08167955.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
gi|292645033|gb|EFF63106.1| RNA polymerase sigma factor RpoD [Turicibacter sanguinis PC909]
gi|325489319|gb|EGC91693.1| RNA polymerase sigma factor RpoD [Turicibacter sp. HGF1]
Length = 456
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 83/128 (64%), Gaps = 14/128 (10%)
Query: 255 LERIKTTLEKESGKAASLNCWAQAAGVSE-------RVLKQHLAFGWYCREELIKSTRPL 307
LERI + +++G+A N + GV+E RV+++ G Y ++ L+++ L
Sbjct: 177 LERIDLLI-QDAGEANDGNEFL--IGVTELSDEEARRVIQE----GEYAKKRLVEANLRL 229
Query: 308 VLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARH 367
V+ +A+ + G G+ F DL+Q GN+G+++ E+FD+ +G+KFSTY +WIR++I++ +A
Sbjct: 230 VVSIAKRHVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFKFSTYATWWIRQAITRAIADQ 289
Query: 368 ARGIKIPV 375
AR I+IPV
Sbjct: 290 ARTIRIPV 297
>gi|284990384|ref|YP_003408938.1| RpoD subfamily RNA polymerase sigma-70 subunit [Geodermatophilus
obscurus DSM 43160]
gi|284063629|gb|ADB74567.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Geodermatophilus
obscurus DSM 43160]
Length = 429
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 189 GERAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 248
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 249 TWWIRQAITRAMADQARTIRIPV 271
>gi|62390750|ref|YP_226152.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 13032]
gi|41326088|emb|CAF20251.1| RNA POLYMERASE SIGMA 70 FACTOR [Corynebacterium glutamicum ATCC
13032]
Length = 494
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 254 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 313
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 314 TWWIRQAITRAMADQARTIRIPVHMVEV 341
>gi|418244274|ref|ZP_12870697.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
gi|354511680|gb|EHE84586.1| RNA polymerase sigma factor [Corynebacterium glutamicum ATCC 14067]
Length = 494
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 254 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 313
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 314 TWWIRQAITRAMADQARTIRIPVHMVEV 341
>gi|422524391|ref|ZP_16600400.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL053PA2]
gi|315078017|gb|EFT50068.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL053PA2]
Length = 511
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 271 GKVAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 330
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WI+++I++ +A AR I+IPV + +
Sbjct: 331 TWWIKQAITRAMADQARTIRIPVHMVEV 358
>gi|203284607|ref|YP_002222347.1| RNA polymerase sigma-70 factor [Borrelia duttonii Ly]
gi|201084050|gb|ACH93641.1| RNA polymerase sigma-70 factor [Borrelia duttonii Ly]
Length = 630
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 88/153 (57%), Gaps = 15/153 (9%)
Query: 226 ERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
E++LN R + EA++++ LERI+ E K S+ SE +
Sbjct: 335 EKSLNIREDLIKEQITEAQLAQ-----KELERIEMYYEYPMDKIISM---------SEEI 380
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 381 LKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRG 439
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 440 FKFSTYATWWIRQAITRSISDQARTIRVPVHMI 472
>gi|40353309|gb|AAR84418.1| essential primary sigma 70 factor [Frankia sp. D11]
gi|40353317|gb|AAR84422.1| essential primary sigma 70 factor [Frankia sp. HR2714]
gi|40353319|gb|AAR84423.1| essential primary sigma 70 factor [Frankia sp. Flec]
Length = 255
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 43 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 102
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 103 TWWIRQAITRAIADQARTIRIPV 125
>gi|334133805|ref|ZP_08507347.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF7]
gi|333608654|gb|EGL19944.1| RNA polymerase sigma factor RpoD [Paenibacillus sp. HGF7]
Length = 374
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 54/69 (78%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+GYKFSTY +WIR++I++ +A
Sbjct: 148 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHTKGYKFSTYATWWIRQAITRAIAD 207
Query: 367 HARGIKIPV 375
AR I+IPV
Sbjct: 208 QARTIRIPV 216
>gi|40353313|gb|AAR84420.1| essential primary sigma 70 factor [Frankia sp. ACN1ag]
Length = 255
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 43 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 102
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 103 TWWIRQAITRAIADQARTIRIPV 125
>gi|337748350|ref|YP_004642512.1| protein SigA [Paenibacillus mucilaginosus KNP414]
gi|379723267|ref|YP_005315398.1| protein SigA [Paenibacillus mucilaginosus 3016]
gi|386725990|ref|YP_006192316.1| protein SigA [Paenibacillus mucilaginosus K02]
gi|336299539|gb|AEI42642.1| SigA [Paenibacillus mucilaginosus KNP414]
gi|378571939|gb|AFC32249.1| SigA [Paenibacillus mucilaginosus 3016]
gi|384093115|gb|AFH64551.1| protein SigA [Paenibacillus mucilaginosus K02]
Length = 378
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 54/69 (78%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+GYKFSTY +WIR++I++ +A
Sbjct: 152 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHTKGYKFSTYATWWIRQAITRAIAD 211
Query: 367 HARGIKIPV 375
AR I+IPV
Sbjct: 212 QARTIRIPV 220
>gi|326803636|ref|YP_004321454.1| RNA polymerase sigma factor RpoD [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651510|gb|AEA01693.1| RNA polymerase sigma factor RpoD [Aerococcus urinae
ACS-120-V-Col10a]
Length = 401
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 60/80 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +W
Sbjct: 163 AKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYTKGFKFSTYATWW 222
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 223 IRQAITRSIADQARTIRIPV 242
>gi|256825489|ref|YP_003149449.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Kytococcus sedentarius
DSM 20547]
gi|256688882|gb|ACV06684.1| RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase
sigma factor, sigma-70 family [Kytococcus sedentarius
DSM 20547]
Length = 594
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 354 GKNAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 413
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 414 TWWIRQAITRAMADQARTIRIPVHMVEV 441
>gi|294631847|ref|ZP_06710407.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. e14]
gi|292835180|gb|EFF93529.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. e14]
Length = 515
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 275 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 334
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 335 TWWIRQAITRAMADQARTIRIPV 357
>gi|282854019|ref|ZP_06263356.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes J139]
gi|386071467|ref|YP_005986363.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes ATCC
11828]
gi|422390675|ref|ZP_16470770.1| RNA polymerase principal sigma factor HrdB [Propionibacterium acnes
HL103PA1]
gi|422464880|ref|ZP_16541487.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL060PA1]
gi|422466074|ref|ZP_16542650.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL110PA4]
gi|422469993|ref|ZP_16546514.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL110PA3]
gi|422564763|ref|ZP_16640414.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL082PA2]
gi|422575944|ref|ZP_16651482.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL001PA1]
gi|282583472|gb|EFB88852.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes J139]
gi|314922986|gb|EFS86817.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL001PA1]
gi|314966763|gb|EFT10862.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL082PA2]
gi|314981097|gb|EFT25191.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL110PA3]
gi|315091922|gb|EFT63898.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL110PA4]
gi|315093321|gb|EFT65297.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL060PA1]
gi|327327588|gb|EGE69364.1| RNA polymerase principal sigma factor HrdB [Propionibacterium acnes
HL103PA1]
gi|353455833|gb|AER06352.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes ATCC
11828]
Length = 510
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 270 GKVAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 329
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WI+++I++ +A AR I+IPV + +
Sbjct: 330 TWWIKQAITRAMADQARTIRIPVHMVEV 357
>gi|317124635|ref|YP_004098747.1| RNA polymerase sigma-70 subunit RpoD [Intrasporangium calvum DSM
43043]
gi|315588723|gb|ADU48020.1| RNA polymerase, sigma 70 subunit, RpoD [Intrasporangium calvum DSM
43043]
Length = 587
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 347 GKKAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 406
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 407 TWWIRQAITRAMADQARTIRIPVHMVEV 434
>gi|187918567|ref|YP_001884130.1| RNA polymerase sigma factor RpoD [Borrelia hermsii DAH]
gi|119861415|gb|AAX17210.1| RNA polymerase sigma factor RpoD [Borrelia hermsii DAH]
Length = 630
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 88/153 (57%), Gaps = 15/153 (9%)
Query: 226 ERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
E++LN R + EA++++ LERI+ E K S+ SE +
Sbjct: 335 EQSLNIREDLIKEQITEAQLAQ-----KELERIEMYYEYPMDKIISM---------SEEI 380
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 381 LKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRG 439
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 440 FKFSTYATWWIRQAITRSISDQARTIRVPVHMI 472
>gi|350566296|ref|ZP_08934981.1| DNA-directed RNA polymerase sigma subunit RpoD [Peptoniphilus
indolicus ATCC 29427]
gi|348662922|gb|EGY79550.1| DNA-directed RNA polymerase sigma subunit RpoD [Peptoniphilus
indolicus ATCC 29427]
Length = 370
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 72/113 (63%), Gaps = 7/113 (6%)
Query: 264 KESGKAASLNCWAQAAGVSERVLKQHLAFGW-YCREELIKSTRPLVLFLARNYRGLGIPF 322
KE GK L G E ++ + + G ++EL ++ LV+ +A+ Y G G+ F
Sbjct: 106 KEIGKIPLLT------GEEEVLIAKRMEIGENLAKKELAEANLRLVVSIAKRYVGRGMSF 159
Query: 323 SDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 160 LDLIQEGNLGLMKAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPV 212
>gi|422459529|ref|ZP_16536177.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL050PA2]
gi|315103424|gb|EFT75400.1| RNA polymerase sigma factor RpoD [Propionibacterium acnes HL050PA2]
Length = 510
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 270 GKVAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 329
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WI+++I++ +A AR I+IPV + +
Sbjct: 330 TWWIKQAITRAMADQARTIRIPVHMVEV 357
>gi|304403970|ref|ZP_07385632.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Paenibacillus
curdlanolyticus YK9]
gi|304346948|gb|EFM12780.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Paenibacillus
curdlanolyticus YK9]
Length = 377
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 54/69 (78%)
Query: 307 LVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVAR 366
LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+GYKFSTY +WIR++I++ +A
Sbjct: 151 LVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDHTKGYKFSTYATWWIRQAITRAIAD 210
Query: 367 HARGIKIPV 375
AR I+IPV
Sbjct: 211 QARTIRIPV 219
>gi|312196071|ref|YP_004016132.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia sp. EuI1c]
gi|311227407|gb|ADP80262.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia sp.
EuI1c]
Length = 393
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 153 GDVAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 212
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 213 TWWIRQAITRAIADQARTIRIPV 235
>gi|21224164|ref|NP_629943.1| RNA polymerase sigma factor [Streptomyces coelicolor A3(2)]
gi|289768642|ref|ZP_06528020.1| transcription initiation factor sigma [Streptomyces lividans TK24]
gi|12644145|sp|P18183.2|HRDB_STRCO RecName: Full=RNA polymerase principal sigma factor HrdB
gi|3036885|emb|CAA18518.1| major vegetative sigma factor [Streptomyces coelicolor A3(2)]
gi|289698841|gb|EFD66270.1| transcription initiation factor sigma [Streptomyces lividans TK24]
Length = 511
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 271 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 330
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 331 TWWIRQAITRAMADQARTIRIPV 353
>gi|375092093|ref|ZP_09738378.1| RNA polymerase sigma factor rpoD [Helcococcus kunzii ATCC 51366]
gi|374561859|gb|EHR33196.1| RNA polymerase sigma factor rpoD [Helcococcus kunzii ATCC 51366]
Length = 675
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 64/94 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
+ LK+ G + +L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+
Sbjct: 424 KYLKKKYRIGKAAKGKLAETNLRLVVSIAKRYVGRGMSFLDLIQEGNLGLMKAVEKFDYK 483
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPVPL 377
RG+KFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 484 RGFKFSTYATWWIRQAITRAIADQARTIRIPVHM 517
>gi|227549126|ref|ZP_03979175.1| RNA polymerase major sigma subunit [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078794|gb|EEI16757.1| RNA polymerase major sigma subunit [Corynebacterium lipophiloflavum
DSM 44291]
Length = 520
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 280 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 339
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 340 TWWIRQAITRAMADQARTIRIPVHMVEV 367
>gi|227495524|ref|ZP_03925840.1| sigma factor [Actinomyces coleocanis DSM 15436]
gi|226831071|gb|EEH63454.1| sigma factor [Actinomyces coleocanis DSM 15436]
Length = 505
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 265 GQLSKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 324
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 325 TWWIRQAITRAMADQARTIRIPV 347
>gi|455643217|gb|EMF22355.1| RNA polymerase sigma factor [Streptomyces gancidicus BKS 13-15]
Length = 509
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 269 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 328
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 329 TWWIRQAITRAMADQARTIRIPV 351
>gi|345891745|ref|ZP_08842582.1| hypothetical protein HMPREF1022_01242 [Desulfovibrio sp.
6_1_46AFAA]
gi|345047958|gb|EGW51807.1| hypothetical protein HMPREF1022_01242 [Desulfovibrio sp.
6_1_46AFAA]
Length = 462
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 60/83 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ELI+S LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 224 AKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 283
Query: 356 IRKSISKMVARHARGIKIPVPLF 378
IR++I++ +A AR I+IPV +
Sbjct: 284 IRQAITRAIADQARTIRIPVHMI 306
>gi|417971564|ref|ZP_12612487.1| RNA polymerase sigma factor [Corynebacterium glutamicum S9114]
gi|344044046|gb|EGV39727.1| RNA polymerase sigma factor [Corynebacterium glutamicum S9114]
Length = 494
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 254 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 313
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 314 TWWIRQAITRAMADQARTIRIPVHMVEV 341
>gi|145295815|ref|YP_001138636.1| RNA polymerase sigma factor [Corynebacterium glutamicum R]
gi|140845735|dbj|BAF54734.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 494
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 254 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 313
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 314 TWWIRQAITRAMADQARTIRIPVHMVEV 341
>gi|405983613|ref|ZP_11041918.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
gi|404388428|gb|EJZ83510.1| RNA polymerase sigma factor RpoD [Slackia piriformis YIT 12062]
Length = 392
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 62/84 (73%)
Query: 292 FGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTY 351
G +++LI++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY
Sbjct: 150 VGIDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTY 209
Query: 352 VQYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A +R I+IPV
Sbjct: 210 ATWWIRQAITRAIADQSRTIRIPV 233
>gi|386859947|ref|YP_006272653.1| RNA polymerase sigma factor [Borrelia crocidurae str. Achema]
gi|384934828|gb|AFI31501.1| RNA polymerase sigma factor [Borrelia crocidurae str. Achema]
Length = 604
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 88/153 (57%), Gaps = 15/153 (9%)
Query: 226 ERALNSRGRRLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERV 285
E++LN R + EA++++ LERI+ E K S+ SE +
Sbjct: 309 EKSLNIREDLIKEQITEAQLAQ-----KELERIEMYYEYPMDKIISM---------SEEI 354
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
LK + +++LIK+ LV+ +A+ Y G+ F DL+Q GN+G+++ E+F++ RG
Sbjct: 355 LKGK-QMMQHAKDQLIKANLRLVVSIAKKYANRGLHFFDLVQEGNIGLIKAVEKFEYKRG 413
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
+KFSTY +WIR++I++ ++ AR I++PV +
Sbjct: 414 FKFSTYATWWIRQAITRSISDQARTIRVPVHMI 446
>gi|336177646|ref|YP_004583021.1| RpoD subfamily RNA polymerase sigma-70 subunit [Frankia symbiont of
Datisca glomerata]
gi|334858626|gb|AEH09100.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Frankia symbiont
of Datisca glomerata]
Length = 392
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 152 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 211
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR+++++ +A AR I+IPV
Sbjct: 212 TWWIRQAVTRAIADQARTIRIPV 234
>gi|218885598|ref|YP_002434919.1| RpoD subfamily RNA polymerase sigma-70 subunit [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|218756552|gb|ACL07451.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 590
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 60/83 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ELI+S LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 352 AKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 411
Query: 356 IRKSISKMVARHARGIKIPVPLF 378
IR++I++ +A AR I+IPV +
Sbjct: 412 IRQAITRAIADQARTIRIPVHMI 434
>gi|88809466|ref|ZP_01124974.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
gi|88786685|gb|EAR17844.1| possible type II alternative RNA polymerase sigma factor
[Synechococcus sp. WH 7805]
Length = 376
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 67/103 (65%)
Query: 273 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVG 332
WA+ +G+ + L+Q L G R+ +I++ LV+ +A+ Y+ G+ DL+Q G +G
Sbjct: 113 TLWAKESGLDTKELQQRLREGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLG 172
Query: 333 VLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+ + E+FD TRG++FSTY +WIR+ I++ +A +R I++PV
Sbjct: 173 LERAVEKFDPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPV 215
>gi|374853415|dbj|BAL56324.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
gi|374857281|dbj|BAL60134.1| RNA polymerase primary sigma factor [uncultured candidate division
OP1 bacterium]
Length = 334
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 286 LKQHLAFGWYC-REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTR 344
L + G C R+ELI + LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD T+
Sbjct: 80 LASRVVAGEKCARDELITANLRLVVSIAKKYMGRGLSFLDLIQEGNLGLMRAVEKFDPTK 139
Query: 345 GYKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
G+KFSTY +WIR++I++ +A +R I+IPV +
Sbjct: 140 GFKFSTYATWWIRQAITRAIADQSRTIRIPVHMI 173
>gi|347731180|ref|ZP_08864282.1| RNA polymerase sigma factor RpoD [Desulfovibrio sp. A2]
gi|347520067|gb|EGY27210.1| RNA polymerase sigma factor RpoD [Desulfovibrio sp. A2]
Length = 590
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 60/83 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ELI+S LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 352 AKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 411
Query: 356 IRKSISKMVARHARGIKIPVPLF 378
IR++I++ +A AR I+IPV +
Sbjct: 412 IRQAITRAIADQARTIRIPVHMI 434
>gi|295836123|ref|ZP_06823056.1| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
gi|295825874|gb|EDY42152.2| RNA polymerase sigma (70) factor RpoD [Streptomyces sp. SPB74]
Length = 493
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 253 GGRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 312
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 313 TWWIRQAITRAMADQARTIRIPV 335
>gi|86608944|ref|YP_477706.1| sigma-70 family RNA polymerase sigma factor [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557486|gb|ABD02443.1| RNA polymerase sigma-70 factor family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 320
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 63/92 (68%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R++ + A G + EL+++ LV+ +A+ Y G+PF DL+Q G +G+++ AE+F++
Sbjct: 66 RLIAEGGAAGERAKRELVRANLRLVVSIAKKYLNRGVPFLDLIQEGTIGLIRAAEKFEYE 125
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
RGYKFSTY +WIR+ I++ VA R ++IPV
Sbjct: 126 RGYKFSTYAYWWIRQGITRAVANQGRLVRIPV 157
>gi|182435494|ref|YP_001823213.1| RNA polymerase sigma factor [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326776131|ref|ZP_08235396.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
gi|11132962|sp|P77951.1|HRDB_STRGR RecName: Full=RNA polymerase principal sigma factor HrdB
gi|1617256|gb|AAB16905.1| principal sigma factor [Streptomyces griseus]
gi|178464010|dbj|BAG18530.1| RNA polymerase principal sigma factor hrdB [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326656464|gb|EGE41310.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces
griseus XylebKG-1]
Length = 514
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 274 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 333
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 334 TWWIRQAITRAMADQARTIRIPV 356
>gi|395204641|ref|ZP_10395581.1| RNA polymerase sigma factor RpoD [Propionibacterium humerusii P08]
gi|328907303|gb|EGG27069.1| RNA polymerase sigma factor RpoD [Propionibacterium humerusii P08]
Length = 506
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 266 GKVAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 325
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WI+++I++ +A AR I+IPV + +
Sbjct: 326 TWWIKQAITRAMADQARTIRIPVHMVEV 353
>gi|40353311|gb|AAR84419.1| essential primary sigma 70 factor [Frankia sp. ACN14a]
Length = 214
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 61/83 (73%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + +L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 26 GQIAKRKLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 85
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 86 TWWIRQAITRAIADQARTIRIPV 108
>gi|428205323|ref|YP_007089676.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
gi|428007244|gb|AFY85807.1| RNA polymerase, sigma subunit, RpsC/SigC [Chroococcidiopsis
thermalis PCC 7203]
Length = 416
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 26/159 (16%)
Query: 239 ARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFG---W- 294
A++++ + + ++ ER+ + L G SL WA +AG+S LK LA G W
Sbjct: 102 AKDDSIIKTYITLIEAQERLTSEL----GHRPSLERWAASAGISVMELKPALAVGKRRWA 157
Query: 295 ------------------YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQG 336
+ +E +IK+ LV+ +A+ Y+ G+ DL+Q G +G+ +
Sbjct: 158 EIAKITVEELEQIQNDGIHAKEHMIKANLRLVVSVAKKYQNRGLELLDLVQEGTLGLERA 217
Query: 337 AERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
E+FD T+GY+FSTY +WIR+ I++ +A +R I++PV
Sbjct: 218 VEKFDPTKGYRFSTYAYWWIRQGITRAIATQSRTIRLPV 256
>gi|365129836|ref|ZP_09341218.1| RNA polymerase sigma factor RpoD [Subdoligranulum sp. 4_3_54A2FAA]
gi|363620810|gb|EHL72057.1| RNA polymerase sigma factor RpoD [Subdoligranulum sp. 4_3_54A2FAA]
Length = 362
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G ++ L ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FDHT+G+KFSTY
Sbjct: 122 GEKAKQRLSEANLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFDHTKGFKFSTYA 181
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 182 TWWIRQAITRAIADQARTIRIPV 204
>gi|300781032|ref|ZP_07090886.1| RNA polymerase sigma factor rpoD [Corynebacterium genitalium ATCC
33030]
gi|300532739|gb|EFK53800.1| RNA polymerase sigma factor rpoD [Corynebacterium genitalium ATCC
33030]
Length = 536
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 62/88 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY
Sbjct: 296 GRKAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYA 355
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 356 TWWIRQAITRAMADQARTIRIPVHMVEV 383
>gi|56752354|ref|YP_173055.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
gi|56687313|dbj|BAD80535.1| group2 RNA polymerase sigma factor RpoD2 [Synechococcus elongatus
PCC 6301]
Length = 320
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 229 LNSRGR-RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLK 287
L GR RL A E + VQ + L +T L G S WA A ++ L
Sbjct: 17 LQEIGRVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAAAVDLNLEDLD 76
Query: 288 QHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYK 347
+ + G + ++I++ LV+ +A+ Y+ + F DL+Q G +G+ +G E+FD ++GYK
Sbjct: 77 RQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGFEKFDPSKGYK 136
Query: 348 FSTYVQYWIRKSISKMVARHARGIKIPV 375
FSTY +WIR++I++ +A+ +R I++P+
Sbjct: 137 FSTYAYWWIRQAITRAIAQQSRTIRLPI 164
>gi|359460652|ref|ZP_09249215.1| RNA polymerase sigma factor SigD [Acaryochloris sp. CCMEE 5410]
Length = 318
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 80/135 (59%)
Query: 241 NEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGWYCREEL 300
E K VQ + L+ I+ L ++ + + W+ AA +SE L++ L G + ++
Sbjct: 28 EEVTFGKQVQDLIKLQAIRDELAEQLERQPNDAEWSVAAQLSEAELQKALHEGEAAKRKM 87
Query: 301 IKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSI 360
+++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I
Sbjct: 88 VEANLRLVVSVAKKYIKRNVDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAI 147
Query: 361 SKMVARHARGIKIPV 375
++ +A R I++P+
Sbjct: 148 TRAIAEKGRTIRLPI 162
>gi|254386999|ref|ZP_05002279.1| RNA polymerase sigma factor [Streptomyces sp. Mg1]
gi|194345824|gb|EDX26790.1| RNA polymerase sigma factor [Streptomyces sp. Mg1]
Length = 520
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 280 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 339
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 340 TWWIRQAITRAMADQARTIRIPV 362
>gi|119961685|ref|YP_947521.1| RNA polymerase sigma (70) factor RpoD [Arthrobacter aurescens TC1]
gi|403526728|ref|YP_006661615.1| RNA polymerase principal sigma factor HrdB [Arthrobacter sp.
Rue61a]
gi|119948544|gb|ABM07455.1| RNA polymerase sigma (70) factor RpoD [Arthrobacter aurescens TC1]
gi|403229155|gb|AFR28577.1| RNA polymerase principal sigma factor HrdB [Arthrobacter sp.
Rue61a]
Length = 437
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 65/94 (69%), Gaps = 4/94 (4%)
Query: 286 LKQHLAF----GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
LK+ L F G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD
Sbjct: 186 LKRELEFVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 245
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+T+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 246 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 279
>gi|163841160|ref|YP_001625565.1| RNA polymerase principal sigma factor [Renibacterium salmoninarum
ATCC 33209]
gi|1808669|emb|CAA71796.1| RNA polymerase [Renibacterium salmoninarum]
gi|162954636|gb|ABY24151.1| RNA polymerase principal sigma factor [Renibacterium salmoninarum
ATCC 33209]
Length = 462
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 77/123 (62%), Gaps = 3/123 (2%)
Query: 256 ERIKTTLEKESGKAASLNCWAQAAGVSERVLKQH---LAFGWYCREELIKSTRPLVLFLA 312
+ + L E+G A A ++E++ +++ + G + L+++ LV+ LA
Sbjct: 182 QEVDLALRIEAGLYAEEKLAADDGKITEKLNREYQWVIHDGKRAKNHLLEANLRLVVSLA 241
Query: 313 RNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIK 372
+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +WIR++I++ +A AR I+
Sbjct: 242 KRYTGRGMLFLDLIQEGNMGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAMADQARTIR 301
Query: 373 IPV 375
IPV
Sbjct: 302 IPV 304
>gi|403730463|ref|ZP_10949020.1| RNA polymerase sigma factor SigB [Gordonia rhizosphera NBRC 16068]
gi|403202499|dbj|GAB93351.1| RNA polymerase sigma factor SigB [Gordonia rhizosphera NBRC 16068]
Length = 339
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 61/86 (70%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G Y R L+++ LV+ LA+ Y G G+P DL+Q GN+G+++ E+FD+ +G+KFSTY
Sbjct: 99 GEYARAHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYAKGFKFSTYA 158
Query: 353 QYWIRKSISKMVARHARGIKIPVPLF 378
+WIR++I++ +A +R I++PV L
Sbjct: 159 TWWIRQAITRGMADQSRTIRLPVHLV 184
>gi|385799581|ref|YP_005835985.1| RpoD subfamily RNA polymerase sigma-70 subunit [Halanaerobium
praevalens DSM 2228]
gi|309388945|gb|ADO76825.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Halanaerobium
praevalens DSM 2228]
Length = 364
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 62/81 (76%)
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ +++L+++ LV+ +A+ Y G G+ F DL+Q GN+G+++ ++FD+T+GYKFSTY +
Sbjct: 126 WAKQQLVQANLRLVVSIAKKYVGRGMLFLDLIQEGNMGLMKAVDKFDYTKGYKFSTYATW 185
Query: 355 WIRKSISKMVARHARGIKIPV 375
WIR++I++ +A AR I++PV
Sbjct: 186 WIRQAITRSIADQARTIRVPV 206
>gi|259507416|ref|ZP_05750316.1| RNA polymerase principal sigma factor SigA, partial
[Corynebacterium efficiens YS-314]
gi|259164981|gb|EEW49535.1| RNA polymerase principal sigma factor SigA [Corynebacterium
efficiens YS-314]
Length = 381
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 84/144 (58%), Gaps = 1/144 (0%)
Query: 235 RLTIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAFGW 294
++ + E E+S ++ A L E E+ AA + A+ +R L+ G
Sbjct: 84 KVALLNAEQEVSLAKRIEAGLYATHKMEEMEAAYAAG-DKDAKLTPAVKRDLRAIARDGR 142
Query: 295 YCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQY 354
+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+++GYKFSTY +
Sbjct: 143 KAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYSKGYKFSTYATW 202
Query: 355 WIRKSISKMVARHARGIKIPVPLF 378
WIR++I++ +A AR I+IPV +
Sbjct: 203 WIRQAITRAMADQARTIRIPVHMV 226
>gi|289578595|ref|YP_003477222.1| RpoD subfamily RNA polymerase sigma-70 subunit [Thermoanaerobacter
italicus Ab9]
gi|289528308|gb|ADD02660.1| RNA polymerase, sigma 70 subunit, RpoD subfamily
[Thermoanaerobacter italicus Ab9]
Length = 273
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 58/80 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ I+S LV+ +A+ Y G GI F DL+Q GN+G+L+ ERFD+ +GYKFSTY +W
Sbjct: 36 AKKRFIESNLRLVVSIAKGYVGKGISFPDLIQEGNLGLLKAVERFDYRKGYKFSTYATWW 95
Query: 356 IRKSISKMVARHARGIKIPV 375
I+++I++ +A AR I+IPV
Sbjct: 96 IKQTITRAIADQARTIRIPV 115
>gi|440696490|ref|ZP_20878956.1| RNA polymerase sigma factor RpoD [Streptomyces turgidiscabies Car8]
gi|440281287|gb|ELP68923.1| RNA polymerase sigma factor RpoD [Streptomyces turgidiscabies Car8]
Length = 511
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 271 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 330
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 331 TWWIRQAITRAMADQARTIRIPV 353
>gi|419759946|ref|ZP_14286231.1| RNA polymerase sigma factor RpoD [Thermosipho africanus H17ap60334]
gi|407514985|gb|EKF49771.1| RNA polymerase sigma factor RpoD [Thermosipho africanus H17ap60334]
Length = 371
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 59/80 (73%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
+++L++S LV+ +A+ Y G G+ F DL+Q GNVG+L+ E+FD +GYKFSTY +W
Sbjct: 129 AKQKLVESNLRLVVSIAKRYVGKGLSFLDLIQEGNVGLLKAVEKFDWKKGYKFSTYATWW 188
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I++PV
Sbjct: 189 IRQAITRAIADQARTIRVPV 208
>gi|406670723|ref|ZP_11077968.1| RNA polymerase sigma factor rpoD [Facklamia hominis CCUG 36813]
gi|405582239|gb|EKB56245.1| RNA polymerase sigma factor rpoD [Facklamia hominis CCUG 36813]
Length = 385
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 60/80 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +W
Sbjct: 148 AKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYTKGFKFSTYATWW 207
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 208 IRQAITRAIADQARTIRIPV 227
>gi|365867904|ref|ZP_09407470.1| RNA polymerase sigma factor [Streptomyces sp. W007]
gi|364002693|gb|EHM23867.1| RNA polymerase sigma factor [Streptomyces sp. W007]
Length = 497
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 257 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 316
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 317 TWWIRQAITRAMADQARTIRIPV 339
>gi|68536164|ref|YP_250869.1| RNA polymerase sigma factor [Corynebacterium jeikeium K411]
gi|68263763|emb|CAI37251.1| RNA polymerase sigma factor A [Corynebacterium jeikeium K411]
Length = 544
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 61/88 (69%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY
Sbjct: 304 GRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYVKGYKFSTYA 363
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 364 TWWIRQAITRAMADQARTIRIPVHMVEV 391
>gi|345002500|ref|YP_004805354.1| RpoD subfamily RNA polymerase sigma-70 subunit [Streptomyces sp.
SirexAA-E]
gi|344318126|gb|AEN12814.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Streptomyces sp.
SirexAA-E]
Length = 515
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 275 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 334
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 335 TWWIRQAITRAMADQARTIRIPV 357
>gi|116670178|ref|YP_831111.1| RNA polymerase subunit sigma 28 [Arthrobacter sp. FB24]
gi|116610287|gb|ABK03011.1| RNA polymerase, sigma 70 subunit, RpoD [Arthrobacter sp. FB24]
Length = 441
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 65/94 (69%), Gaps = 4/94 (4%)
Query: 286 LKQHLAF----GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFD 341
LK+ L F G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD
Sbjct: 190 LKRELEFVIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFD 249
Query: 342 HTRGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+T+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 250 YTKGFKFSTYATWWIRQAITRAMADQARTIRIPV 283
>gi|433457599|ref|ZP_20415585.1| RNA polymerase subunit sigma 28 [Arthrobacter crystallopoietes
BAB-32]
gi|432194598|gb|ELK51206.1| RNA polymerase subunit sigma 28 [Arthrobacter crystallopoietes
BAB-32]
Length = 432
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 65/92 (70%)
Query: 284 RVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHT 343
R L+Q + G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T
Sbjct: 183 RDLEQIIHDGKRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYT 242
Query: 344 RGYKFSTYVQYWIRKSISKMVARHARGIKIPV 375
+G+KFSTY +WIR++I++ +A AR I+IPV
Sbjct: 243 KGFKFSTYATWWIRQAITRAMADQARTIRIPV 274
>gi|260578861|ref|ZP_05846767.1| RNA polymerase principal sigma factor SigA [Corynebacterium
jeikeium ATCC 43734]
gi|258603008|gb|EEW16279.1| RNA polymerase principal sigma factor SigA [Corynebacterium
jeikeium ATCC 43734]
Length = 552
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 61/88 (69%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+ +GYKFSTY
Sbjct: 312 GRRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYVKGYKFSTYA 371
Query: 353 QYWIRKSISKMVARHARGIKIPVPLFLI 380
+WIR++I++ +A AR I+IPV + +
Sbjct: 372 TWWIRQAITRAMADQARTIRIPVHMVEV 399
>gi|313884259|ref|ZP_07818025.1| RNA polymerase sigma factor RpoD [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620706|gb|EFR32129.1| RNA polymerase sigma factor RpoD [Eremococcus coleocola
ACS-139-V-Col8]
Length = 376
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 60/80 (75%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++EL ++ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD+T+G+KFSTY +W
Sbjct: 139 AKQELAEANLRLVVSIAKRYVGRGMSFLDLIQEGNMGLMKAVEKFDYTKGFKFSTYATWW 198
Query: 356 IRKSISKMVARHARGIKIPV 375
IR++I++ +A AR I+IPV
Sbjct: 199 IRQAITRAIADQARTIRIPV 218
>gi|163751572|ref|ZP_02158794.1| RNA polymerase sigma-70 factor [Shewanella benthica KT99]
gi|161328580|gb|EDP99733.1| RNA polymerase sigma-70 factor [Shewanella benthica KT99]
Length = 609
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 89/153 (58%), Gaps = 18/153 (11%)
Query: 237 TIARNEAEMSKGVQVVANLERIKT----------TLEKESGKA-ASLNCWAQAAGVSERV 285
+IA +AE++ VA L+ ++T +EKE+G A AS+ + + E
Sbjct: 308 SIAWFDAELASKKPYVAGLQMVETDVRRCRFKLDIIEKETGLAIASIKDINRRMSIGE-- 365
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
A ++E++++ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RG
Sbjct: 366 -----AKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG 420
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLF 378
YKFSTY +WIR++I++ +A AR I+IPV +
Sbjct: 421 YKFSTYATWWIRQAITRSIADQARTIRIPVHMI 453
>gi|94986960|ref|YP_594893.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Lawsonia intracellularis PHE/MN1-00]
gi|442555790|ref|YP_007365615.1| RNA polymerase sigma factor, sigma-70 family [Lawsonia
intracellularis N343]
gi|94731209|emb|CAJ54571.1| DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
[Lawsonia intracellularis PHE/MN1-00]
gi|441493237|gb|AGC49931.1| RNA polymerase sigma factor, sigma-70 family [Lawsonia
intracellularis N343]
Length = 590
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 60/83 (72%)
Query: 296 CREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYW 355
++ELI+S LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ RGYKFSTY +W
Sbjct: 352 AKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWW 411
Query: 356 IRKSISKMVARHARGIKIPVPLF 378
IR++I++ +A AR I+IPV +
Sbjct: 412 IRQAITRAIADQARTIRIPVHMI 434
>gi|453051027|gb|EME98546.1| RNA polymerase sigma factor [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 516
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 276 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 335
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 336 TWWIRQAITRAMADQARTIRIPV 358
>gi|329940007|ref|ZP_08289289.1| RNA polymerase sigma factor [Streptomyces griseoaurantiacus M045]
gi|329300833|gb|EGG44729.1| RNA polymerase sigma factor [Streptomyces griseoaurantiacus M045]
Length = 512
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 272 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 331
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 332 TWWIRQAITRAMADQARTIRIPV 354
>gi|297191610|ref|ZP_06909008.1| RNA polymerase sigma factor [Streptomyces pristinaespiralis ATCC
25486]
gi|297151002|gb|EFH30922.1| RNA polymerase sigma factor [Streptomyces pristinaespiralis ATCC
25486]
Length = 516
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 276 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 335
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 336 TWWIRQAITRAMADQARTIRIPV 358
>gi|291436829|ref|ZP_06576219.1| RNA polymerase sigma factor RpoD [Streptomyces ghanaensis ATCC
14672]
gi|291339724|gb|EFE66680.1| RNA polymerase sigma factor RpoD [Streptomyces ghanaensis ATCC
14672]
Length = 509
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 60/83 (72%)
Query: 293 GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352
G + L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY
Sbjct: 269 GRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYA 328
Query: 353 QYWIRKSISKMVARHARGIKIPV 375
+WIR++I++ +A AR I+IPV
Sbjct: 329 TWWIRQAITRAMADQARTIRIPV 351
>gi|223936990|ref|ZP_03628898.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [bacterium
Ellin514]
gi|223894271|gb|EEF60724.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [bacterium
Ellin514]
Length = 614
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 63/95 (66%)
Query: 286 LKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRG 345
L Q+ A + E+ ++ LV+ + + Y G+ F D++Q GN+G+++G E+F++ RG
Sbjct: 362 LNQYAAKAHQAKTEMAEANLRLVISIGKKYTNRGLAFLDIIQEGNMGLMKGVEKFEYRRG 421
Query: 346 YKFSTYVQYWIRKSISKMVARHARGIKIPVPLFLI 380
YKFSTY +WIR++I++ +A AR I+IPV + I
Sbjct: 422 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIEI 456
>gi|160902263|ref|YP_001567844.1| RpoD family RNA polymerase sigma factor [Petrotoga mobilis SJ95]
gi|160359907|gb|ABX31521.1| RNA polymerase, sigma 70 subunit, RpoD family [Petrotoga mobilis
SJ95]
Length = 414
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 58/79 (73%)
Query: 299 ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRK 358
EL+K+ LV+ +A+ Y G G+ F DL+Q GN+G+++ E+FD RG+KFSTY +W+R+
Sbjct: 171 ELVKANLRLVISIAKRYTGRGLTFLDLIQEGNIGLIRAVEKFDWKRGFKFSTYATWWVRQ 230
Query: 359 SISKMVARHARGIKIPVPL 377
+I++ +A AR I+IPV L
Sbjct: 231 AITRAIADQARTIRIPVHL 249
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,199,071,525
Number of Sequences: 23463169
Number of extensions: 193379448
Number of successful extensions: 575160
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9898
Number of HSP's successfully gapped in prelim test: 431
Number of HSP's that attempted gapping in prelim test: 563808
Number of HSP's gapped (non-prelim): 11547
length of query: 381
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 237
effective length of database: 8,980,499,031
effective search space: 2128378270347
effective search space used: 2128378270347
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)