Query 016882
Match_columns 381
No_of_seqs 249 out of 2850
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 05:21:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 7.5E-30 2.6E-34 245.5 29.5 305 45-367 5-335 (491)
2 3o7q_A L-fucose-proton symport 99.9 1.8E-25 6E-30 211.7 24.9 258 55-367 29-318 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.9 6.7E-26 2.3E-30 215.3 21.7 277 50-365 26-309 (451)
4 2gfp_A EMRD, multidrug resista 99.9 3.1E-24 1E-28 199.2 12.5 251 56-365 4-256 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.9 4.1E-20 1.4E-24 177.5 24.9 144 89-233 49-195 (491)
6 2xut_A Proton/peptide symporte 99.7 6.7E-17 2.3E-21 156.4 19.1 142 91-233 51-197 (524)
7 2cfq_A Lactose permease; trans 99.6 1.8E-16 6.2E-21 149.1 2.5 146 89-236 38-189 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.6 8E-14 2.7E-18 131.9 20.4 145 89-234 283-433 (451)
9 2cfq_A Lactose permease; trans 99.5 4.5E-13 1.5E-17 125.8 14.4 146 92-238 257-404 (417)
10 3o7q_A L-fucose-proton symport 99.4 9.5E-13 3.3E-17 124.0 13.7 142 89-233 290-431 (438)
11 4gc0_A D-xylose-proton symport 99.3 3.8E-11 1.3E-15 114.8 17.8 151 89-239 307-468 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.3 8.1E-12 2.8E-16 119.6 11.9 143 90-234 315-471 (491)
13 2gfp_A EMRD, multidrug resista 99.0 1.6E-10 5.6E-15 106.4 4.8 129 89-221 230-363 (375)
14 2xut_A Proton/peptide symporte 98.7 1.4E-08 4.8E-13 97.8 6.0 138 96-233 337-501 (524)
15 2g9p_A Antimicrobial peptide l 60.3 5.7 0.00019 19.2 1.7 14 113-126 2-15 (26)
16 3arc_T Photosystem II reaction 33.5 51 0.0018 17.6 2.9 13 227-239 16-28 (32)
17 2zz9_A Aquaporin-4; water tran 24.7 3.3E+02 0.011 23.3 9.0 17 212-228 206-222 (301)
18 4dve_A Biotin transporter BIOY 20.1 2.3E+02 0.0079 22.6 6.1 22 102-123 101-122 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=7.5e-30 Score=245.51 Aligned_cols=305 Identities=31% Similarity=0.509 Sum_probs=236.4
Q ss_pred chhHHHHHHHHHHHHHHhhhcccccccccccccccCCCCCC-CccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 016882 45 YSVSAAILPFLFPALGGLLYGYDIGSTSCATISIESPTLSG-ISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGR 123 (381)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Gr 123 (381)
++.+..+.+.++++++.++++||.+.++.+++.+.++...+ ....+.+..+.+++.+.+.+|..+|++++|+++||+||
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GR 84 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGR 84 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCH
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455666667788999999999999998888776541110 00113456778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------HhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHH
Q 016882 124 RRELILAALLYLVGALVTA------------------LAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLI 185 (381)
Q Consensus 124 k~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~ 185 (381)
|++++++.+++.++.++++ +++|++.++++|++.|++.|+..+..+++++|+.|+++|++..
T Consensus 85 k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~ 164 (491)
T 4gc0_A 85 RDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLV 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhH
Confidence 9999999999999999998 4789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcc-------cchhHHHHHhhHHHHHHHHHHHhhcccchhHHHHhhccccCcchhhHHH
Q 016882 186 SLKEFFIVLGMVGGYGIGSLLVDL-------VAGWRYMYGASTPLAVIMGMGMWWLPASPRWLLLCAMKRKGDMQDLRES 258 (381)
Q Consensus 186 ~~~~~~~~~g~~~~~~~~~~l~~~-------~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (381)
++.+.+..+|.++++.++..+... ...||+.+.+..++.++.++..++.||+|+|+..++ +.+|
T Consensus 165 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~---------~~~~ 235 (491)
T 4gc0_A 165 SFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRG---------KQEQ 235 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTT---------CHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcC---------chhH
Confidence 999999999999999988877642 237999999999998888888899999999999877 6677
Q ss_pred HHHHHHHHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHHc
Q 016882 259 AISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQSA 338 (381)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (381)
+++.+++.++++..+++ ..+..+... .+++.......+ ..++..+.....++.++.+++.+.+|.+++.+..
T Consensus 236 a~~~l~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (491)
T 4gc0_A 236 AEGILRKIMGNTLATQA---VQEIKHSLD--HGRKTGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL 307 (491)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhHHHhcCCchhHHH---HHHHHHHHH--hhhhhhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhc
Confidence 77777776543222111 111111100 011111111222 2346667777778888999999999999999998
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhHHHHHH
Q 016882 339 GFSAASDATRVSILLGLFKVGSCTLFFMS 367 (381)
Q Consensus 339 g~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 367 (381)
+. +.........+.++..+++++++.+.
T Consensus 308 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 335 (491)
T 4gc0_A 308 GA-STDIALLQTIIVGVINLTFTVLAIMT 335 (491)
T ss_dssp SC-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CccchhhHHHHHHHHHHHHHHHHHHH
Confidence 87 66667777788888888888876544
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=1.8e-25 Score=211.68 Aligned_cols=258 Identities=16% Similarity=0.136 Sum_probs=202.7
Q ss_pred HHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 016882 55 LFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLY 134 (381)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~ 134 (381)
..+++..+..+++.....+..|.+.++ +|++..+.+++.+++.++..++++++|+++||+|||+++.++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQA-------FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 444555667777777888888888887 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhh-ccc
Q 016882 135 LVGALVT---ALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLV-DLV 210 (381)
Q Consensus 135 ~~~~~~~---~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~ 210 (381)
+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999 888999999999999999999999999999999999999999999999999999999999999998 554
Q ss_pred ch------------------------hHHHHHhhHHHHHHHHHHHhhc--ccchhHHHHhhccccCcchhhHHHHHHHHH
Q 016882 211 AG------------------------WRYMYGASTPLAVIMGMGMWWL--PASPRWLLLCAMKRKGDMQDLRESAISCLC 264 (381)
Q Consensus 211 ~~------------------------w~~~f~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (381)
+. ||+.|++.+++.++..+..++. ||+++. +
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--------~--------------- 238 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD--------N--------------- 238 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT--------C---------------
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc--------c---------------
Confidence 33 9999988887777655554443 443220 0
Q ss_pred HHhCCCCCCCChhhHHHHHHhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHH-HHHc-CCCC
Q 016882 265 RLRGQSIGDSAPTEVDEILTELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASI-LQSA-GFSA 342 (381)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~ 342 (381)
+.+ +++++.+.+++++++++..+...+...+... ....+..|.|.+ +++. |+ +
T Consensus 239 -----~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~-~ 293 (438)
T 3o7q_A 239 -----HSD---------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGM-T 293 (438)
T ss_dssp -----CCC---------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTC-C
T ss_pred -----ccc---------------ccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCc-c
Confidence 000 0011223445677777765555444333333 235566777777 7776 88 7
Q ss_pred CchhHHHHHHHHHHHHHHhHHHHHH
Q 016882 343 ASDATRVSILLGLFKVGSCTLFFMS 367 (381)
Q Consensus 343 ~~~~~~~~~~~~~~~~i~~~~~~~~ 367 (381)
...+.....+..+..+++.+++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~g~l 318 (438)
T 3o7q_A 294 AGFAANYLTGTMVCFFIGRFTGTWL 318 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888888775533
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=6.7e-26 Score=215.30 Aligned_cols=277 Identities=14% Similarity=0.053 Sum_probs=207.9
Q ss_pred HHHHHHHHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 016882 50 AILPFLFPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELIL 129 (381)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~ 129 (381)
.+..+...+++.+..+++.....+..|.+.++ + .+..+.+++.+++.++..++++++|+++||+|||+++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~ 97 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-------G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA 97 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-------T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHH
Confidence 34455666777788888888888999999887 8 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH----hchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHH
Q 016882 130 AALLYLVGALVTAL----APDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSL 205 (381)
Q Consensus 130 ~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 205 (381)
+.++.+++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccch-hHHHHHhhHHHHHHHH-HHHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHH
Q 016882 206 LVDLVAG-WRYMYGASTPLAVIMG-MGMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEIL 283 (381)
Q Consensus 206 l~~~~~~-w~~~f~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (381)
+.+.. + ||+.|++.+++.++.. +..+++||+|+....++ +++.+...+ .+.+
T Consensus 178 l~~~~-g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------------~~~~--- 231 (451)
T 1pw4_A 178 GMAWF-NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP---IEEYKNDYP-------------------DDYN--- 231 (451)
T ss_dssp HHHHT-CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCS---CTTTCCC----------------------------
T ss_pred HHHHh-ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCC---hhhhccccc-------------------ccch---
Confidence 88776 7 9999999998887754 44566888775321110 000000000 0000
Q ss_pred HhhhhccccccccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHhH
Q 016882 284 TELSYVGEDKEVSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKVGSCT 362 (381)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~ 362 (381)
++.+++...++...+++++++..+...+ ..+....+...+..|.|.++++ .|+ +..+......+.++..+++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~ 306 (451)
T 1pw4_A 232 EKAEQELTAKQIFMQYVLPNKLLWYIAI----ANVFVYLLRYGILDWSPTYLKEVKHF-ALDKSSWAYFLYEYAGIPGTL 306 (451)
T ss_dssp -------CCTHHHHHHTSSCHHHHHHHH----HHHHHHHHHHHHHHHHHHHBTTBSCC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccchHHHHHcCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 0000001111111355566543333322 2233333456677888888887 588 767777888888888888877
Q ss_pred HHH
Q 016882 363 LFF 365 (381)
Q Consensus 363 ~~~ 365 (381)
+..
T Consensus 307 ~~g 309 (451)
T 1pw4_A 307 LCG 309 (451)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=3.1e-24 Score=199.17 Aligned_cols=251 Identities=14% Similarity=0.114 Sum_probs=197.3
Q ss_pred HHHHHHhhhcccccccccccccccCCCCCCCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 016882 56 FPALGGLLYGYDIGSTSCATISIESPTLSGISWYDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYL 135 (381)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~ 135 (381)
..++..+..++......+..|.+.++ +|.+..+.+++.+++.++..+++++.|+++||+|||+.+.++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-------LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-------SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 34455566677777778888888887 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 016882 136 VGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRY 215 (381)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~ 215 (381)
++.++.+++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+.. +||+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~ 155 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW-NWRA 155 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876 9999
Q ss_pred HHHhhHHHHHHHHH-HHhhcccchhHHHHhhccccCcchhhHHHHHHHHHHHhCCCCCCCChhhHHHHHHhhhhcccccc
Q 016882 216 MYGASTPLAVIMGM-GMWWLPASPRWLLLCAMKRKGDMQDLRESAISCLCRLRGQSIGDSAPTEVDEILTELSYVGEDKE 294 (381)
Q Consensus 216 ~f~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (381)
.|++.+++.++..+ ..+++||+++.. + ++++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------------------------------------~~~~~~ 189 (375)
T 2gfp_A 156 CYLFLLVLCAGVTFSMARWMPETRPVD---A-------------------------------------------PRTRLL 189 (375)
T ss_dssp HHHHHHHHHHHHHCCCCCSSCCCSTTT---C-------------------------------------------CCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcccCCCC---c-------------------------------------------ccccHH
Confidence 99999888877655 445577765310 0 001123
Q ss_pred ccchhhccccchHHHHHHHHHHHHHHhhchhHHHhcHHHHHHH-cCCCCCchhHHHHHHHHHHHHHHhHHHH
Q 016882 295 VSLREVFHGKCLKALIIGAGLVLFQQITGQPSVLYYAASILQS-AGFSAASDATRVSILLGLFKVGSCTLFF 365 (381)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~ 365 (381)
.+++++++++..+...+...+ .......+..+.|.++++ .|+ +..+........++..+++.++.-
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~ 256 (375)
T 2gfp_A 190 TSYKTLFGNSGFNCYLLMLIG----GLAGIAAFEACSGVLMGAVLGL-SSMTVSILFILPIPAAFFGAWFAG 256 (375)
T ss_dssp TCSTHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCSCSSHHHHHH-HHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666766544443333322 223345555666666655 577 556666677777777776666533
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.86 E-value=4.1e-20 Score=177.52 Aligned_cols=144 Identities=15% Similarity=0.125 Sum_probs=134.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHH
Q 016882 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADI-LGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHA 167 (381)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~ 167 (381)
+|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.++++++++++.++++|++.|++.+...+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 128 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPN 128 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccch
Confidence 79999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCccc--chhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882 168 APMYIAETAPTPM--RGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233 (381)
Q Consensus 168 ~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~ 233 (381)
..+++.|++|+++ |+.++++++.+..+|..++|.+++.+.+.. +||+.|++.++..++.++..++
T Consensus 129 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 129 VSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 777888899999999999999999999877 9999999988877765555443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.74 E-value=6.7e-17 Score=156.44 Aligned_cols=142 Identities=18% Similarity=0.200 Sum_probs=131.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHhhHhHHH
Q 016882 91 LSSVEIGLITSGSLYGALIGSILAFNIADIL-GRRRELILAALLYLVGALVTALAP-DFIIMVVGRFVFGIGIGLAMHAA 168 (381)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-Grk~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~~~g~~~~~~ 168 (381)
.+..+.+++.+++.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999998 99999999999999999999999
Q ss_pred HHHHHhhCCcccchhHHhH---HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882 169 PMYIAETAPTPMRGQLISL---KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233 (381)
Q Consensus 169 ~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~ 233 (381)
.+++.|++|+++|+++.+. .+.+..+|..++|.+++.+.+.. +||+.|++.+++.++.++..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 89999999999999999998876 9999999998887766555444
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.59 E-value=1.8e-16 Score=149.05 Aligned_cols=146 Identities=18% Similarity=0.200 Sum_probs=100.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH---HHHhchHH-HHHHHHHHHHHHHhhH
Q 016882 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALV---TALAPDFI-IMVVGRFVFGIGIGLA 164 (381)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~---~~~~~~~~-~~~~~r~l~G~~~g~~ 164 (381)
+|++..+.+++.+++.++..++++++|+++||+|||++++++..+..++... ..+.+... .+..++.+.|++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999888776543211 12222111 1233444444444433
Q ss_pred hHHHHHHHHhhCCc--ccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhccc
Q 016882 165 MHAAPMYIAETAPT--PMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWLPA 236 (381)
Q Consensus 165 ~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~~~ 236 (381)
.+.....+.++.++ ++|+...+.......+|..++|.+++.+.+. +||+.|++.+++.++.++..++.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~--~~~~~f~~~~~~~~~~~~~~~~~~~ 189 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI--NNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH--CSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHcCc
Confidence 33333333333332 4556667777777889999999999998863 7999999888776555544444443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.59 E-value=8e-14 Score=131.88 Aligned_cols=145 Identities=16% Similarity=0.151 Sum_probs=128.3
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHH-HHHHHHHHh--chHHHHHHHHHHHHHHHhh
Q 016882 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADIL--GRRRELILAALLYL-VGALVTALA--PDFIIMVVGRFVFGIGIGL 163 (381)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--Grk~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~r~l~G~~~g~ 163 (381)
+|.+..+.+++.++..++..++.++.|++.||+ |||+.+.++..+.. ++.++..+. .+.+.+.++.++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999 99999888877766 666655555 3678888888999999998
Q ss_pred HhHHHHHHHHhhCCcccchhHHhHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhc
Q 016882 164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVL-GMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL 234 (381)
Q Consensus 164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~ 234 (381)
..+....++.|.+|+++|++++++.+....+ |..+++.+.+.+.+.. ||+..|++.+++.++..++.++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 8898899999999999999999999999999 9999999999999987 89999999998888776665554
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.47 E-value=4.5e-13 Score=125.84 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=123.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHHHHH
Q 016882 92 SSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAAPMY 171 (381)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~ 171 (381)
+....+++.++..++..++.++.|++.||+|||+.+..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888889999999999999999999999999888888877777777788888888888888887777778899
Q ss_pred HHhhCCcccchhHHhH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh-cccch
Q 016882 172 IAETAPTPMRGQLISL-KEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW-LPASP 238 (381)
Q Consensus 172 ~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~-~~~~~ 238 (381)
++|.+|++.|+++.++ ++....+|..++|.+++.+.+.. |++..|.+.+++.++..+..++ .||++
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999999 48888999999999999998876 8999999888888776655444 55543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.43 E-value=9.5e-13 Score=124.01 Aligned_cols=142 Identities=8% Similarity=-0.030 Sum_probs=120.6
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhhHhHHH
Q 016882 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAPDFIIMVVGRFVFGIGIGLAMHAA 168 (381)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~ 168 (381)
+|.+..+.+++.++..++..++.++.|++.||+|||+.+.++.++..++.++..+.++.+.++.. ++.|++.+...+..
T Consensus 290 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~ 368 (438)
T 3o7q_A 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTI 368 (438)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999998888888887665444 88899999999999
Q ss_pred HHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 016882 169 PMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWW 233 (381)
Q Consensus 169 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~ 233 (381)
.++..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..++++..|++.+++.++.++..++
T Consensus 369 ~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 369 FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp HHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999966 888888877 5569999999999999988733998888776665554444333
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.33 E-value=3.8e-11 Score=114.82 Aligned_cols=151 Identities=15% Similarity=0.036 Sum_probs=110.0
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhc----hHHHHHHHHHHHHHH-Hhh
Q 016882 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALLYLVGALVTALAP----DFIIMVVGRFVFGIG-IGL 163 (381)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~~-~g~ 163 (381)
.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+... ..+..+++-++...+ ..+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhH
Confidence 466777777778888899999999999999999999999998888887766654421 122222222222222 223
Q ss_pred HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhccc-----chhHHHHHhhHHHHHHHHH-HHhhcccc
Q 016882 164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-----AGWRYMYGASTPLAVIMGM-GMWWLPAS 237 (381)
Q Consensus 164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~~w~~~f~i~~~~~~~~~~-~~~~~~~~ 237 (381)
..+....+.+|.+|.+.|+++.++......+|..+++.+...+.+.. .++.+.|++.++++++..+ .++++||+
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 45677889999999999999999999999999999888776654321 1455677888888777554 55679998
Q ss_pred hh
Q 016882 238 PR 239 (381)
Q Consensus 238 ~~ 239 (381)
..
T Consensus 467 kg 468 (491)
T 4gc0_A 467 KG 468 (491)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.31 E-value=8.1e-12 Score=119.56 Aligned_cols=143 Identities=12% Similarity=0.031 Sum_probs=114.3
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH-----HHHHHHHHHHHHHHHhc---------hHHHHHHHHH
Q 016882 90 DLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELI-----LAALLYLVGALVTALAP---------DFIIMVVGRF 155 (381)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~r~ 155 (381)
+.+..+.+++.+...++..++.++.+++.||+|||+... .+.++.+++.++..... +.+.+.++.+
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 315 DSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWA 394 (491)
T ss_dssp CCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHH
T ss_pred ccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHH
Confidence 444455677788888899999999999999999986654 67777777666665543 6677888889
Q ss_pred HHHHHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhHHHHHHHHHHHhhc
Q 016882 156 VFGIGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGASTPLAVIMGMGMWWL 234 (381)
Q Consensus 156 l~G~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~~~~~~~~~~~~~~ 234 (381)
+.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+. ++.+.|++.++++++..+..+++
T Consensus 395 l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 395 LVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK--SEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS--STTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998999999999999999999999999999999999999999888765 56677887777777655554443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.01 E-value=1.6e-10 Score=106.43 Aligned_cols=129 Identities=16% Similarity=0.095 Sum_probs=103.2
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH-HHHHHH--HHHH--hchHHHHHHHHHHHHHHHhh
Q 016882 89 YDLSSVEIGLITSGSLYGALIGSILAFNIADILGRRRELILAALL-YLVGAL--VTAL--APDFIIMVVGRFVFGIGIGL 163 (381)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~Grk~~l~~~~~~-~~~~~~--~~~~--~~~~~~~~~~r~l~G~~~g~ 163 (381)
+|.+..+.+++.+...++..++.++.+++.||+|++. ..+..+ ...+.. .... .++.+.+++..++.|++.+.
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 307 (375)
T 2gfp_A 230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM 307 (375)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Confidence 5888999999999999999999999999999999833 233322 222221 2222 23677788888999999999
Q ss_pred HhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHhhH
Q 016882 164 AMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLVAGWRYMYGAST 221 (381)
Q Consensus 164 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~w~~~f~i~~ 221 (381)
..+....++.|..| ++|+++.++.+....+|..+++.+.+.+.+.. +|+..+++.+
T Consensus 308 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-~~~~~~~~~~ 363 (375)
T 2gfp_A 308 LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG-QGSLGLLMTL 363 (375)
T ss_dssp TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH-HHHHHHHHHH
T ss_pred hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccHHHHHHH
Confidence 99999999999998 89999999999999999999999999987764 7777776643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.69 E-value=1.4e-08 Score=97.83 Aligned_cols=138 Identities=9% Similarity=0.041 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----Hhhch----HHHHHHHHHHHHHHHHHHHHh---------chHHHHHHHHHHHH
Q 016882 96 IGLITSGSLYGALIGSILAFNIA----DILGR----RRELILAALLYLVGALVTALA---------PDFIIMVVGRFVFG 158 (381)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~g~l~----d~~Gr----k~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~l~G 158 (381)
.+++.+...++..++.++.+++. +|.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 45566666666667777666654 55443 356667777777777766653 36677888889999
Q ss_pred HHHhhHhHHHHHHHHhhCCcccchhHHhHHHHHHHHHHHHHHHHHHHhhccc-chh---------HHHHHhhHHHHHHHH
Q 016882 159 IGIGLAMHAAPMYIAETAPTPMRGQLISLKEFFIVLGMVGGYGIGSLLVDLV-AGW---------RYMYGASTPLAVIMG 228 (381)
Q Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~w---------~~~f~i~~~~~~~~~ 228 (381)
++.+...+...+++.|..|+++|++++|+.+....+|..+++.+.+.+.+.. .+| +..|++.+++.++..
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAA 496 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988642 134 334666676666655
Q ss_pred HHHhh
Q 016882 229 MGMWW 233 (381)
Q Consensus 229 ~~~~~ 233 (381)
+..++
T Consensus 497 ~~~~~ 501 (524)
T 2xut_A 497 IVFAL 501 (524)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 54443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=60.35 E-value=5.7 Score=19.24 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=11.5
Q ss_pred HHHHHHHhhchHHH
Q 016882 113 LAFNIADILGRRRE 126 (381)
Q Consensus 113 ~~g~l~d~~Grk~~ 126 (381)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999865
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=33.47 E-value=51 Score=17.63 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=8.1
Q ss_pred HHHHHhhcccchh
Q 016882 227 MGMGMWWLPASPR 239 (381)
Q Consensus 227 ~~~~~~~~~~~~~ 239 (381)
.+....+++|+|+
T Consensus 16 iiFFAI~FRePPr 28 (32)
T 3arc_T 16 LFFFAIFFREPPR 28 (32)
T ss_dssp HHHHHHHTSCCCC
T ss_pred HHHHhhhhcCCCC
Confidence 3344556788876
No 17
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=24.68 E-value=3.3e+02 Score=23.34 Aligned_cols=17 Identities=6% Similarity=0.284 Sum_probs=11.2
Q ss_pred hhHHHHHhhHHHHHHHH
Q 016882 212 GWRYMYGASTPLAVIMG 228 (381)
Q Consensus 212 ~w~~~f~i~~~~~~~~~ 228 (381)
++.|.||+.-+++.+..
T Consensus 206 ~~~WVy~vgPiiGaila 222 (301)
T 2zz9_A 206 ENHWIYWVGPIIGAVLA 222 (301)
T ss_dssp TTTTHHHHHHHHHHHHH
T ss_pred cceeeeeeHHHHHHHHH
Confidence 55678887777765543
No 18
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=20.13 E-value=2.3e+02 Score=22.61 Aligned_cols=22 Identities=18% Similarity=-0.034 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhch
Q 016882 102 GSLYGALIGSILAFNIADILGR 123 (381)
Q Consensus 102 ~~~~~~~~~~~~~g~l~d~~Gr 123 (381)
-|.+|+.+.+.+.|++.+|..+
T Consensus 101 GYLiGF~~aA~v~G~l~~~~~~ 122 (198)
T 4dve_A 101 GYRIAWLFTPFLIGFFLKKLKI 122 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHHccc
Confidence 4567777778888888887654
Done!