BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016883
(381 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 116/211 (54%), Gaps = 40/211 (18%)
Query: 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223
P VAIVGRPNVGKS +FNR+ G +IV D PGVTRDR+Y + W ++F L+DTGG+
Sbjct: 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI-- 81
Query: 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283
IG E P + I +QA A++E+ VIIF+V+G+
Sbjct: 82 ----------------DIGDE--PFL----------AQIRQQAEIAMDEADVIIFMVNGR 113
Query: 284 AGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGF-SPLPISAISGT 342
G+TAADEE+A L + K ++LAVNK ++ + +F+SLGF P PIS G
Sbjct: 114 EGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMR-ANIYDFYSLGFGEPYPISGTHGL 170
Query: 343 GTGELLDLVCSELKKV------EVCIGFLLI 367
G G+LLD V K + E I F LI
Sbjct: 171 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLI 201
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 33/174 (18%)
Query: 157 NVPE----HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE 212
N+PE + + ++GRPNVGKS+L N ++G R IV + G TRD + + + E
Sbjct: 185 NIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE 244
Query: 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE 272
F++VDT G+ K + T + +V R A AI+
Sbjct: 245 FVIVDTAGMRKKGK-------------------VYETTEKYSVLR--------ALKAIDR 277
Query: 273 SCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF 326
S V+ ++DG+ G+ D+ IA + + K +++ VNK ++ K + EF
Sbjct: 278 SEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEF 329
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/211 (41%), Positives = 114/211 (54%), Gaps = 40/211 (18%)
Query: 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223
P VAIVGRPNVGKS +FNR+ G +IV D PGVTRDR+Y + W ++F L+DTGG+
Sbjct: 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI-- 61
Query: 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283
IG E P + I +QA A +E+ VIIF V+G+
Sbjct: 62 ----------------DIGDE--PFL----------AQIRQQAEIAXDEADVIIFXVNGR 93
Query: 284 AGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGF-SPLPISAISGT 342
G+TAADEE+A L + K ++LAVNK ++ + +F+SLGF P PIS G
Sbjct: 94 EGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEXR-ANIYDFYSLGFGEPYPISGTHGL 150
Query: 343 GTGELLDLVCSELKKV------EVCIGFLLI 367
G G+LLD V K + E I F LI
Sbjct: 151 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLI 181
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 33/174 (18%)
Query: 157 NVPE----HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE 212
N+PE + + ++GRPNVGKS+L N +G R IV + G TRD + + + E
Sbjct: 165 NIPETKYNEEVIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQE 224
Query: 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE 272
F++VDT G + + + E T + +V R A AI+
Sbjct: 225 FVIVDTAG----XRKKGKVYE---------------TTEKYSVLR--------ALKAIDR 257
Query: 273 SCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF 326
S V+ ++DG+ G+ D+ IA + + K +++ VNK ++ K EF
Sbjct: 258 SEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTXKEF 309
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 100/194 (51%), Gaps = 33/194 (17%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
V IVGRPNVGKS LFN+LV +AIV DE GVTRD + W F LVDT GV +
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD-- 61
Query: 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG 285
+ +I+ T+ I E+ +++F+VDG+ G
Sbjct: 62 -NPQDIISQKXKEVTLNX--------------------------IREADLVLFVVDGKRG 94
Query: 286 LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-EFWSLGF-SPLPISAISGTG 343
+T DE +AD+LRK+ +D IL NK E+ R+ +V E +SLGF P+P+SA
Sbjct: 95 ITKEDESLADFLRKSTVD--TILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNIN 152
Query: 344 TGELLDLVCSELKK 357
L+ + +L++
Sbjct: 153 LDTXLETIIKKLEE 166
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+VAIVGRPNVGKS LFN ++ RA+V PG TRD + F +++ VDT G+
Sbjct: 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRK 241
Query: 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
S+ +P +E + + +IE++ V++ ++D
Sbjct: 242 SRVEPRTVEKYS--------------------------NYRVVDSIEKADVVVIVLDATQ 275
Query: 285 GLTAADEEIA 294
G+T D+ A
Sbjct: 276 GITRQDQRXA 285
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 97/192 (50%), Gaps = 35/192 (18%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+V IVGRPNVGKS+LFNRL+ A+V D PGVTRD G F+LVDTGG+ +
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG 62
Query: 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
K + I E + A+E++ V++F VDG+A
Sbjct: 63 DKWEKKIQE-------------------------------KVDRALEDAEVVLFAVDGRA 91
Query: 285 GLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGF-SPLPISAISGTG 343
LT AD E+A++LR+ K +IL K + P K + + + LGF P+P S+ G
Sbjct: 92 ELTQADYEVAEYLRRK--GKPVILVATKVDDP-KHELYLGPLYGLGFGDPIPTSSEHARG 148
Query: 344 TGELLDLVCSEL 355
ELL+ + L
Sbjct: 149 LEELLEAIWERL 160
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 36/197 (18%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG-RSFWGEHEFMLVDTGGVLNV 224
VAIVG+PNVGKS L N L+G +I+ + G TR R+ G ++ E + + +DT G+
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
KS +G SM+E A ++EE+ VI+F++D
Sbjct: 72 KKSD-----------VLGH----------------SMVE-IAKQSLEEADVILFMIDATE 103
Query: 285 GLTAADEEIADWLRKNYMDKFIILAVNKCES--PRKGIMQVSEFWSLGFSPL----PISA 338
G DEEI K ++K +I+ +NK + P K ++ + + L PISA
Sbjct: 104 GWRPRDEEIYQNFIKP-LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISA 162
Query: 339 ISGTGTGELLDLVCSEL 355
+ G EL+ + L
Sbjct: 163 LKGANLDELVKTILKYL 179
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 36/197 (18%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG-RSFWGEHEFMLVDTGGVLNV 224
VAIVG+PNVGKS L N L+G +I+ + G TR R+ G ++ E + + +DT G+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
KS +G SM+E A ++EE+ VI+F++D
Sbjct: 73 KKSD-----------VLGH----------------SMVE-IAKQSLEEADVILFMIDATE 104
Query: 285 GLTAADEEIADWLRKNYMDKFIILAVNKCES--PRKGIMQVSEFWSLGFSPL----PISA 338
G DEEI K ++K +I+ +NK + P K ++ + + L PISA
Sbjct: 105 GWRPRDEEIYQNFIKP-LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISA 163
Query: 339 ISGTGTGELLDLVCSEL 355
+ G EL+ + L
Sbjct: 164 LKGANLDELVKTILKYL 180
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 36/196 (18%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
R+ IVG+PNVGKS L NRL+ +RAIV D PG TRD + F +VDT GV
Sbjct: 245 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV--- 301
Query: 225 SKSQPN-IMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283
+S+ N ++E L I T+ IE++ +++F++D
Sbjct: 302 -RSETNDLVERLGIERTL--------------------------QEIEKADIVLFVLDAS 334
Query: 284 AGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK-GIMQVSEFWSLGFSPLPISAISGT 342
+ L D +I + ++ +K ++ +NK + K ++ + ISA+ G
Sbjct: 335 SPLDEEDRKILERIK----NKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGE 390
Query: 343 GTGELLDLVCSELKKV 358
G +L + + E +++
Sbjct: 391 GLEKLEESIYRETQEI 406
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 34/162 (20%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+VAIVGRPNVGKS+L N +RAIV D PG TRD + + G ++DT G+
Sbjct: 226 KVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRET 285
Query: 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
S IG+E +R+AA + +++ +D
Sbjct: 286 SDQ----------VEKIGVE----RSRQAA----------------NTADLVLLTIDAAT 315
Query: 285 GLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF 326
G T D+EI + ++ + +IL +NK + K ++ E+
Sbjct: 316 GWTTGDQEIYEQVKH----RPLILVMNKIDLVEKQLITSLEY 353
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 35/194 (18%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+AIVGRPNVGKS L N+L+G +I + TR R+ G G ++ + VDT G+
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL---- 63
Query: 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG 285
++ E AI ++ + A+++I + ++IF+V+G
Sbjct: 64 ----HMEEKRAIN---------------------RLMNKAASSSIGDVELVIFVVEG-TR 97
Query: 286 LTAADEEIADWLRKNYMDKFIILAVNKCES--PRKGIMQVSEFWSLGFSPLPISAISGTG 343
T DE + + LR+ +ILAVNK ++ + ++ +F + + L I IS
Sbjct: 98 WTPDDEMVLNKLREGKAP--VILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE- 154
Query: 344 TGELLDLVCSELKK 357
TG +D + + ++K
Sbjct: 155 TGLNVDTIAAIVRK 168
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 35/194 (18%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+AIVGRPNVGKS L N+L+G +I + TR R+ G G ++ + VDT G+
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGL---- 66
Query: 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG 285
++ E AI ++ + A+++I + ++IF+V+G
Sbjct: 67 ----HMEEKRAIN---------------------RLMNKAASSSIGDVELVIFVVEG-TR 100
Query: 286 LTAADEEIADWLRKNYMDKFIILAVNKCES--PRKGIMQVSEFWSLGFSPLPISAISGTG 343
T DE + + LR+ +ILAVNK ++ + ++ +F + + L I IS
Sbjct: 101 WTPDDEMVLNKLREGKAP--VILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE- 157
Query: 344 TGELLDLVCSELKK 357
TG +D + + ++K
Sbjct: 158 TGLNVDTIAAIVRK 171
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 86/216 (39%), Gaps = 47/216 (21%)
Query: 154 TIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEF 213
T G+ P L VA VGR NVGKS+L N L A V PG TR + + ++
Sbjct: 14 TPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINF---YLVNSKY 70
Query: 214 MLVDT--GGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIE 271
VD G VSK + + + L E S+
Sbjct: 71 YFVDLPGYGYAKVSKKERMLWKRLV---------------EDYFKNRWSL---------- 105
Query: 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILA----------VNKCESPRKGIM 321
++ LVDG+ +D + +W++ + I+L K E RK
Sbjct: 106 --QMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFS 163
Query: 322 QVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357
+ E ++ +P S+++G G ELLDL+ + LK+
Sbjct: 164 KYGE-----YTIIPTSSVTGEGISELLDLISTLLKE 194
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221
VAIVG+PNVGKS L N L+G A + P TR R+ G G + + VDT G+
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221
+L VA+VG PNVGK+ +FN L G R V + PGVT ++ G + E EF++VD G+
Sbjct: 2 VLKTVALVGNPNVGKTTIFNALTGL-RQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
Query: 222 LNVS 225
+++
Sbjct: 61 YSLT 64
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%)
Query: 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221
I G+PN GKS L N L+G RAIV PG TRD + + F L DT G+
Sbjct: 238 IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGL 291
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227
++G PN GK+ LFN L N+ V + PGVT ++ G GEH + D GV ++ +
Sbjct: 6 LIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVAN 64
Query: 228 QPNIMED--LAITTTIGME 244
I +D +A + I +E
Sbjct: 65 AEGISQDEQIAAQSVIDLE 83
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+A++G PNVGKS +FN L G N + + PGVT ++ G + +F +VD GV ++
Sbjct: 9 EIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67
Query: 225 S 225
+
Sbjct: 68 T 68
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+A++G PNVGKS +FN L G N + + PGVT ++ G + +F +VD GV ++
Sbjct: 6 EIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 64
Query: 225 S 225
+
Sbjct: 65 T 65
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+A++G PNVGKS +FN L G N + + PGVT ++ G + +F +VD GV ++
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Query: 225 S 225
+
Sbjct: 64 T 64
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+A++G PNVGKS +FN L G N + + PGVT ++ G + +F +VD GV ++
Sbjct: 5 EIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63
Query: 225 S 225
+
Sbjct: 64 T 64
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+V I GRPN GKS+L N L G AIV D G TRD + ++DT G+
Sbjct: 9 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 68
Query: 225 S 225
S
Sbjct: 69 S 69
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+V I GRPN GKS+L N L G AIV D G TRD + ++DT G+
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 65
Query: 225 S 225
S
Sbjct: 66 S 66
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224
+V I GRPN GKS+L N L G AIV D G TRD + ++DT G+
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREA 65
Query: 225 S 225
S
Sbjct: 66 S 66
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+ ++G PN GK+ LFN+L G+R V + GVT +R G+ +H+ LVD G +++
Sbjct: 6 IGLIGNPNSGKTTLFNQLT-GSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 226 --KSQPNIMEDLA 236
SQ ++ E +A
Sbjct: 65 TISSQTSLDEQIA 77
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+ ++G PN GK+ LFN+L G+R V + GVT +R G+ +H+ LVD G +++
Sbjct: 6 IGLIGNPNSGKTTLFNQLT-GSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 226 --KSQPNIMEDLA 236
SQ ++ E +A
Sbjct: 65 TISSQTSLDEQIA 77
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+ ++G PN GK+ LFN+L G+R V + GVT +R G+ +H+ LVD G +++
Sbjct: 6 IGLIGNPNSGKTTLFNQLT-GSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 226 --KSQPNIMEDLA 236
SQ ++ E +A
Sbjct: 65 TISSQTSLDEQIA 77
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT 218
P H++ +VA+ G PNVGK++LFN L G + V + PGVT ++ G + + L+D
Sbjct: 2 PLHMV-KVALAGCPNVGKTSLFNALT-GTKQYVANWPGVTVEKKEGVFTYKGYTINLIDL 59
Query: 219 GGVLNVSKS 227
G ++ S
Sbjct: 60 PGTYSLGYS 68
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 83/201 (41%), Gaps = 41/201 (20%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222
+P V I G PNVGKS L L I P TR G+ G + ++DT G+L
Sbjct: 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIA-SYPFTTRGINVGQFEDGYFRYQIIDTPGLL 225
Query: 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE-SCVIIFLVD 281
+ S+ N IE+QA A+ +II++ D
Sbjct: 226 DRPISERN------------------------------EIEKQAILALRYLGNLIIYIFD 255
Query: 282 GQAGLTAADEE---IADWLRKNYMDKFIILAVNKCE-SPRKGIMQVSEF-WSLGFSPLPI 336
EE + + + + D ++ +NK + + + I ++ +F G +P+ I
Sbjct: 256 PSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKI 315
Query: 337 SAISGTGTGELLDLVCSELKK 357
SA+ GTG +DLV E+ K
Sbjct: 316 SALKGTG----IDLVKEEIIK 332
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222
R I+G PNVGKS L NRL N A D PG+T + + + E L+DT G+L
Sbjct: 122 RALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGIL 176
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
V ++G PN GK+ LFN+L G R V + GVT +R G +H+ LVD G +++
Sbjct: 6 VGLIGNPNSGKTTLFNQLTGA-RQRVGNWAGVTVERKEGIFATTDHQVTLVDLPGTYSLT 64
Query: 226 --KSQPNIMEDLA 236
SQ ++ E +A
Sbjct: 65 TISSQTSLDEQIA 77
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT 218
P H++ +VA+ G PNVGK++LFN L G + V + PGVT ++ G + + L+D
Sbjct: 2 PLHMV-KVALAGCPNVGKTSLFNALT-GTKQYVANWPGVTVEKKEGVFTYKGYTINLIDL 59
Query: 219 GGVLNVSKS 227
G ++ S
Sbjct: 60 PGTYSLGYS 68
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT 218
P H + +VA+ G PNVGK++LFN L G + V + PGVT ++ G + + L+D
Sbjct: 2 PLHXV-KVALAGCPNVGKTSLFNALT-GTKQYVANWPGVTVEKKEGVFTYKGYTINLIDL 59
Query: 219 GGVLNVSKS 227
G ++ S
Sbjct: 60 PGTYSLGYS 68
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222
L RV IVG PN GKS + N+L G + V +PG+T+ + F E+ ++DT G+L
Sbjct: 99 LARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW---FSLENGVKILDTPGIL 155
Query: 223 NVSKSQPNIM-EDLA 236
NI EDLA
Sbjct: 156 -----YKNIFSEDLA 165
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMY 203
+ + GR NVGKS+ N LVG N +IV D G T D +Y
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVY 74
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
+ +A++G PN GK++LFN + G N+ V + PGVT +R G
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSG 43
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
+ +A++G PN GK++LFN + G N+ V + PGVT +R G
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSG 43
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
+ +A++G PN GK++LFN + G N+ V + PGVT +R G
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSG 43
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 159 PEHLLPRVAIVGRPNVGKSALFNRLVG-GNRAIVVDEPGVTRDRMYGRSFW---GEHEFM 214
PE LP +A+ GR NVGKS+ N L+ N A +PG T+ +F+ E F+
Sbjct: 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT----LNFYIINDELHFV 74
Query: 215 LVDTGGVLNVSKSQ 228
V G VSKS+
Sbjct: 75 DVPGYGFAKVSKSE 88
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
+ +A++G PN GK++LFN + G N+ V + PGV+ +R G
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVSVERKSG 43
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
+ +A++G PN GK++LFN + G N+ V + PGV +R G
Sbjct: 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVAVERKSG 43
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
V IVG PNVGKS LFN L N A+ + P T D+ G
Sbjct: 4 VGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVG 41
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
V IVG PNVGKS LFN L N A+ + P T D+ G
Sbjct: 4 VGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVG 41
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204
+ +A++G P GK++LFN + G N+ V + PGVT +R G
Sbjct: 3 MTEIALIGNPASGKTSLFNLITGHNQR-VGNWPGVTVERKSG 43
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222
+P + IVG N GK++LFN L G + + + Y + MLVDT G +
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFI 237
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNV 224
+ + G PNVGKS+ N + N + V T +Y F + +++ ++DT G+L+
Sbjct: 32 IILSGAPNVGKSSFMNIVSRAN--VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89
Query: 225 SKSQPNIMEDLAITTTIGMEGIPL 248
+ N +E IT + G+ L
Sbjct: 90 AFENRNTIEMTTITALAHINGVIL 113
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 165 RVAIVGRPNVGKSALFNRLVGGNRAIV-VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223
R+ +VGR GKSA N ++G R + VTR G W + +VDT + +
Sbjct: 23 RLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFS 82
Query: 224 --VSKSQPNIME 233
VSK+ P E
Sbjct: 83 SQVSKTDPGCEE 94
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIV---VDEPGVTRDRMYGRSFWGEHEFML 215
P + R+ +VG+ GKSA N ++G R + +T+ S W E E ++
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILG--RKVFHSGTAAKSITKKCEKRSSSWKETELVV 82
Query: 216 VDTGGVLNV 224
VDT G+ +
Sbjct: 83 VDTPGIFDT 91
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT 218
+P + IVG N GK++LFN L G + + + Y + MLVDT
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-NNRKIMLVDT 233
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT 218
+P + IVG N GK++LFN L G + + + Y + MLVDT
Sbjct: 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPI-NNRKIMLVDT 233
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 157 NVPEHLLPRVAIVGRPNVGKSALFNRLVGGNR-AIVVDEPGVTRDRMY 203
++P + P +A GR N GKS N L R A PG T+ Y
Sbjct: 23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINY 70
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 72/187 (38%), Gaps = 45/187 (24%)
Query: 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225
+ GR NVGKS L RL G + PGVTR + W H+ ++D G
Sbjct: 4 IIFAGRSNVGKSTLIYRLT-GKKVRRGKRPGVTRKIIEIE--WKNHK--IIDXPG----- 53
Query: 226 KSQPNIMEDLAITTTIGM-EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
G G+P +E + IE A V + +VDG+A
Sbjct: 54 ---------------FGFXXGLPKEVQERIKDEIVHFIEDNAKNI----DVAVLVVDGKA 94
Query: 285 -----------GLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSP 333
G D E +LR+ +D I+AVNK + K + +V F + F
Sbjct: 95 APEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKI-KNVQEVINFLAEKFE- 150
Query: 334 LPISAIS 340
+P+S I
Sbjct: 151 VPLSEID 157
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
++ + T+ +GIPLA A+ +P +I R+ E S V I V G +
Sbjct: 130 EIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSS 180
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284
++ + T+ +GIPLA A+ +P +I R+ E S V I V G +
Sbjct: 130 EIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSS 180
>pdb|1JAL|A Chain A, Ychf Protein (Hi0393)
pdb|1JAL|B Chain B, Ychf Protein (Hi0393)
Length = 363
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 165 RVAIVGRPNVGKSALFNRL 183
+ IVG PNVGKS LFN L
Sbjct: 4 KCGIVGLPNVGKSTLFNAL 22
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 165 RVAIVGRPNVGKSALFNRLV 184
++ IVG PNVGKS FN L
Sbjct: 24 KIGIVGLPNVGKSTFFNVLT 43
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 176 KSALFNRLV------GGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQP 229
K+++F+R++ GG+ + + G + +YGRSF E+ M D G+L+++ + P
Sbjct: 55 KNSIFHRIIPQFMCQGGD---ITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGP 111
Query: 230 N 230
N
Sbjct: 112 N 112
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 176 KSALFNRLV------GGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQP 229
K+++F+R++ GG+ + + G + +YGRSF E+ M D G+L+++ + P
Sbjct: 55 KNSIFHRIIPQFMCQGGD---ITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGP 111
Query: 230 NIMEDLAITTTI 241
N + T +
Sbjct: 112 NTNSSQFLITLV 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,977,756
Number of Sequences: 62578
Number of extensions: 283106
Number of successful extensions: 992
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 914
Number of HSP's gapped (non-prelim): 70
length of query: 381
length of database: 14,973,337
effective HSP length: 101
effective length of query: 280
effective length of database: 8,652,959
effective search space: 2422828520
effective search space used: 2422828520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)