Query 016883
Match_columns 381
No_of_seqs 411 out of 3219
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:40:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1160 Predicted GTPases [Gen 100.0 9.2E-29 2E-33 242.5 19.8 266 51-376 97-371 (444)
2 TIGR03594 GTPase_EngA ribosome 99.9 4.7E-26 1E-30 230.0 21.8 257 43-360 81-348 (429)
3 PRK03003 GTP-binding protein D 99.9 2.6E-25 5.7E-30 227.1 22.3 245 55-360 135-386 (472)
4 PRK00093 GTP-binding protein D 99.9 4.6E-25 9.9E-30 223.3 21.6 244 54-359 97-347 (435)
5 COG1160 Predicted GTPases [Gen 99.9 1E-24 2.2E-29 214.2 18.3 161 164-356 4-165 (444)
6 COG1159 Era GTPase [General fu 99.9 2E-24 4.4E-29 201.8 17.8 167 164-362 7-178 (298)
7 COG0486 ThdF Predicted GTPase 99.9 3.4E-24 7.4E-29 211.0 20.1 162 163-358 217-378 (454)
8 PRK09518 bifunctional cytidyla 99.9 8.5E-24 1.8E-28 225.6 23.3 247 55-360 372-625 (712)
9 PF02421 FeoB_N: Ferrous iron 99.9 4.1E-24 8.9E-29 185.7 13.1 150 165-351 2-156 (156)
10 TIGR00436 era GTP-binding prot 99.9 4.1E-23 8.9E-28 196.4 18.3 162 165-359 2-167 (270)
11 PRK15494 era GTPase Era; Provi 99.9 2.3E-22 5E-27 197.0 19.2 165 163-359 52-219 (339)
12 cd01894 EngA1 EngA1 subfamily. 99.9 5.6E-22 1.2E-26 171.0 16.9 156 167-355 1-157 (157)
13 TIGR03156 GTP_HflX GTP-binding 99.9 1.6E-21 3.4E-26 191.7 21.8 160 162-354 188-350 (351)
14 cd01897 NOG NOG1 is a nucleola 99.9 1.5E-21 3.3E-26 171.0 18.3 161 164-355 1-167 (168)
15 PRK05291 trmE tRNA modificatio 99.9 2.4E-21 5.2E-26 196.5 20.4 157 163-357 215-371 (449)
16 COG0218 Predicted GTPase [Gene 99.9 5.2E-21 1.1E-25 170.2 18.8 178 150-357 11-198 (200)
17 PRK03003 GTP-binding protein D 99.9 5E-21 1.1E-25 195.6 19.8 162 163-357 38-200 (472)
18 cd01878 HflX HflX subfamily. 99.9 1.3E-20 2.9E-25 171.2 20.0 162 162-355 40-204 (204)
19 PRK12299 obgE GTPase CgtA; Rev 99.9 8.3E-21 1.8E-25 185.3 19.6 164 163-358 158-330 (335)
20 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.2E-20 2.7E-25 162.4 18.4 154 165-355 3-156 (157)
21 PRK00089 era GTPase Era; Revie 99.9 7.3E-21 1.6E-25 182.7 18.7 164 164-359 6-174 (292)
22 TIGR03594 GTPase_EngA ribosome 99.9 7.8E-21 1.7E-25 192.0 19.4 161 165-358 1-162 (429)
23 PRK11058 GTPase HflX; Provisio 99.9 2.1E-20 4.7E-25 187.8 22.4 164 163-358 197-364 (426)
24 cd01895 EngA2 EngA2 subfamily. 99.9 1.6E-20 3.5E-25 164.0 18.7 163 163-354 2-173 (174)
25 cd01898 Obg Obg subfamily. Th 99.9 1.1E-20 2.5E-25 165.6 17.6 159 165-355 2-170 (170)
26 COG1084 Predicted GTPase [Gene 99.9 1.5E-20 3.1E-25 177.5 19.3 205 108-355 124-335 (346)
27 cd04171 SelB SelB subfamily. 99.9 1.7E-20 3.6E-25 163.1 15.6 150 165-353 2-163 (164)
28 PRK12297 obgE GTPase CgtA; Rev 99.8 5E-20 1.1E-24 184.3 20.3 163 164-359 159-330 (424)
29 PRK00093 GTP-binding protein D 99.8 4.6E-20 9.9E-25 186.8 19.8 160 164-356 2-162 (435)
30 cd04124 RabL2 RabL2 subfamily. 99.8 1.9E-20 4.1E-25 163.9 14.6 155 165-358 2-160 (161)
31 TIGR02729 Obg_CgtA Obg family 99.8 4.4E-20 9.5E-25 179.9 18.5 161 163-355 157-328 (329)
32 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 4.1E-20 9E-25 161.6 16.2 153 164-357 1-167 (168)
33 TIGR00450 mnmE_trmE_thdF tRNA 99.8 8.5E-20 1.8E-24 184.4 20.7 160 163-358 203-362 (442)
34 PRK09518 bifunctional cytidyla 99.8 5E-20 1.1E-24 196.8 20.0 164 161-357 273-437 (712)
35 cd04145 M_R_Ras_like M-Ras/R-R 99.8 7.3E-20 1.6E-24 159.4 17.4 152 164-355 3-163 (164)
36 COG2262 HflX GTPases [General 99.8 9.7E-20 2.1E-24 176.7 19.8 170 161-363 190-363 (411)
37 cd04175 Rap1 Rap1 subgroup. T 99.8 4.9E-20 1.1E-24 161.1 16.1 153 164-356 2-163 (164)
38 cd01879 FeoB Ferrous iron tran 99.8 6.7E-20 1.4E-24 158.5 16.8 152 168-356 1-157 (158)
39 cd04138 H_N_K_Ras_like H-Ras/N 99.8 8E-20 1.7E-24 158.3 17.0 152 164-355 2-161 (162)
40 cd04136 Rap_like Rap-like subf 99.8 5.8E-20 1.3E-24 159.9 16.1 152 164-355 2-162 (163)
41 PRK12296 obgE GTPase CgtA; Rev 99.8 6E-20 1.3E-24 186.1 18.5 165 163-359 159-343 (500)
42 cd04163 Era Era subfamily. Er 99.8 1.4E-19 2.9E-24 156.6 17.6 161 163-355 3-168 (168)
43 cd00877 Ran Ran (Ras-related n 99.8 6.9E-20 1.5E-24 161.4 15.8 154 164-358 1-161 (166)
44 smart00173 RAS Ras subfamily o 99.8 1.3E-19 2.9E-24 158.1 17.5 153 165-357 2-163 (164)
45 PF00009 GTP_EFTU: Elongation 99.8 1.7E-20 3.7E-25 168.7 11.8 154 163-356 3-187 (188)
46 cd04160 Arfrp1 Arfrp1 subfamil 99.8 6.2E-20 1.3E-24 160.7 14.9 151 165-353 1-166 (167)
47 cd01861 Rab6 Rab6 subfamily. 99.8 1.2E-19 2.6E-24 157.8 16.4 152 165-355 2-161 (161)
48 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 1.3E-19 2.9E-24 158.7 16.7 154 164-356 3-164 (166)
49 PRK12298 obgE GTPase CgtA; Rev 99.8 1.4E-19 3E-24 180.0 18.7 165 163-359 159-336 (390)
50 cd04144 Ras2 Ras2 subfamily. 99.8 5.3E-20 1.1E-24 165.7 13.9 156 165-360 1-167 (190)
51 TIGR03598 GTPase_YsxC ribosome 99.8 1.4E-19 3.1E-24 161.3 16.5 162 154-345 9-179 (179)
52 cd01881 Obg_like The Obg-like 99.8 5.6E-20 1.2E-24 161.8 13.7 155 168-354 1-175 (176)
53 cd04176 Rap2 Rap2 subgroup. T 99.8 1.6E-19 3.6E-24 157.5 16.2 152 164-355 2-162 (163)
54 cd01890 LepA LepA subfamily. 99.8 9.1E-20 2E-24 161.6 14.8 152 165-356 2-177 (179)
55 cd04120 Rab12 Rab12 subfamily. 99.8 1.9E-19 4.1E-24 164.0 17.2 154 165-358 2-165 (202)
56 KOG1423 Ras-like GTPase ERA [C 99.8 5.6E-20 1.2E-24 171.3 13.8 170 163-359 72-274 (379)
57 cd04142 RRP22 RRP22 subfamily. 99.8 6E-19 1.3E-23 160.2 20.4 163 165-358 2-176 (198)
58 cd04149 Arf6 Arf6 subfamily. 99.8 1.1E-19 2.4E-24 160.5 15.1 149 163-353 9-167 (168)
59 cd04154 Arl2 Arl2 subfamily. 99.8 1.5E-19 3.1E-24 160.0 15.6 149 163-353 14-172 (173)
60 cd04112 Rab26 Rab26 subfamily. 99.8 1.4E-19 3.1E-24 163.0 15.6 155 165-358 2-165 (191)
61 PRK04213 GTP-binding protein; 99.8 4.6E-19 1E-23 160.6 19.0 167 162-359 8-195 (201)
62 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 2.1E-19 4.6E-24 159.3 16.4 154 164-357 3-165 (172)
63 cd01865 Rab3 Rab3 subfamily. 99.8 2.5E-19 5.5E-24 157.1 16.6 154 164-356 2-163 (165)
64 cd04119 RJL RJL (RabJ-Like) su 99.8 2.5E-19 5.5E-24 156.1 16.6 153 165-356 2-167 (168)
65 cd01889 SelB_euk SelB subfamil 99.8 1.8E-19 3.9E-24 162.4 16.1 153 165-357 2-187 (192)
66 cd04157 Arl6 Arl6 subfamily. 99.8 1.5E-19 3.2E-24 157.1 14.8 149 165-353 1-161 (162)
67 cd00881 GTP_translation_factor 99.8 1.5E-19 3.2E-24 160.8 15.1 152 165-356 1-187 (189)
68 cd04106 Rab23_lke Rab23-like s 99.8 2E-19 4.3E-24 156.5 15.5 150 165-354 2-161 (162)
69 cd04121 Rab40 Rab40 subfamily. 99.8 2.8E-19 6.1E-24 161.3 16.8 155 163-357 6-168 (189)
70 cd04140 ARHI_like ARHI subfami 99.8 2.4E-19 5.1E-24 157.3 15.8 151 164-354 2-163 (165)
71 KOG1191 Mitochondrial GTPase [ 99.8 1.3E-19 2.8E-24 178.4 15.5 169 163-360 268-454 (531)
72 cd04158 ARD1 ARD1 subfamily. 99.8 2.8E-19 6.1E-24 157.8 16.2 153 165-359 1-164 (169)
73 PRK00454 engB GTP-binding prot 99.8 6.4E-19 1.4E-23 158.6 18.8 172 156-357 17-195 (196)
74 cd01867 Rab8_Rab10_Rab13_like 99.8 3.6E-19 7.9E-24 156.4 16.8 155 163-356 3-165 (167)
75 cd01860 Rab5_related Rab5-rela 99.8 2.3E-19 5.1E-24 156.2 15.3 153 164-355 2-162 (163)
76 cd01874 Cdc42 Cdc42 subfamily. 99.8 2.9E-19 6.3E-24 159.0 15.9 151 164-354 2-173 (175)
77 cd01868 Rab11_like Rab11-like. 99.8 4.2E-19 9.1E-24 155.2 16.5 154 163-355 3-164 (165)
78 PTZ00369 Ras-like protein; Pro 99.8 3.4E-19 7.3E-24 160.3 16.3 157 163-359 5-170 (189)
79 PLN03071 GTP-binding nuclear p 99.8 2.5E-19 5.4E-24 165.3 15.6 158 161-358 11-174 (219)
80 smart00175 RAB Rab subfamily o 99.8 4.9E-19 1.1E-23 154.0 16.5 155 164-357 1-163 (164)
81 cd01864 Rab19 Rab19 subfamily. 99.8 3.4E-19 7.4E-24 156.1 15.5 154 163-355 3-165 (165)
82 cd01866 Rab2 Rab2 subfamily. 99.8 6.1E-19 1.3E-23 155.3 17.1 155 163-356 4-166 (168)
83 cd04134 Rho3 Rho3 subfamily. 99.8 4.4E-19 9.5E-24 159.6 16.2 155 165-359 2-177 (189)
84 cd04122 Rab14 Rab14 subfamily. 99.8 4E-19 8.7E-24 155.9 15.3 153 164-356 3-164 (166)
85 cd04127 Rab27A Rab27a subfamil 99.8 4.7E-19 1E-23 157.3 15.7 154 163-356 4-177 (180)
86 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 7.8E-19 1.7E-23 159.4 17.3 155 164-358 1-170 (201)
87 cd04133 Rop_like Rop subfamily 99.8 6.9E-19 1.5E-23 157.0 16.3 153 164-356 2-173 (176)
88 cd04110 Rab35 Rab35 subfamily. 99.8 9.3E-19 2E-23 158.8 17.4 157 163-359 6-170 (199)
89 cd04139 RalA_RalB RalA/RalB su 99.8 1.1E-18 2.4E-23 151.6 17.0 153 164-356 1-162 (164)
90 cd04132 Rho4_like Rho4-like su 99.8 4.2E-19 9.1E-24 158.8 14.6 155 165-359 2-170 (187)
91 cd04109 Rab28 Rab28 subfamily. 99.8 8.2E-19 1.8E-23 161.2 16.9 154 165-358 2-168 (215)
92 cd04101 RabL4 RabL4 (Rab-like4 99.8 9E-19 1.9E-23 152.8 16.3 153 165-355 2-163 (164)
93 cd04147 Ras_dva Ras-dva subfam 99.8 7.1E-19 1.5E-23 159.4 16.0 156 165-360 1-167 (198)
94 cd04118 Rab24 Rab24 subfamily. 99.8 1.1E-18 2.4E-23 157.0 17.1 155 165-358 2-168 (193)
95 cd01862 Rab7 Rab7 subfamily. 99.8 1.2E-18 2.6E-23 152.9 16.8 155 165-358 2-169 (172)
96 cd01863 Rab18 Rab18 subfamily. 99.8 7.8E-19 1.7E-23 152.7 15.4 151 164-354 1-160 (161)
97 cd04113 Rab4 Rab4 subfamily. 99.8 1.1E-18 2.4E-23 152.0 16.2 151 165-354 2-160 (161)
98 smart00174 RHO Rho (Ras homolo 99.8 6.8E-19 1.5E-23 155.2 15.1 150 166-355 1-171 (174)
99 cd04150 Arf1_5_like Arf1-Arf5- 99.8 7.2E-19 1.6E-23 153.8 14.9 147 165-353 2-158 (159)
100 cd04146 RERG_RasL11_like RERG/ 99.8 8.9E-19 1.9E-23 153.4 15.4 153 165-356 1-164 (165)
101 cd01871 Rac1_like Rac1-like su 99.8 7.9E-19 1.7E-23 156.0 15.2 151 164-354 2-173 (174)
102 smart00177 ARF ARF-like small 99.8 1.5E-18 3.2E-23 154.3 16.8 152 163-356 13-174 (175)
103 cd04151 Arl1 Arl1 subfamily. 99.8 8.7E-19 1.9E-23 152.5 14.9 147 165-353 1-157 (158)
104 smart00178 SAR Sar1p-like memb 99.8 8.1E-19 1.8E-23 157.3 15.1 150 163-354 17-183 (184)
105 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 1.2E-18 2.5E-23 154.7 15.8 149 163-353 15-173 (174)
106 cd01891 TypA_BipA TypA (tyrosi 99.8 1E-18 2.3E-23 157.7 15.7 144 164-347 3-173 (194)
107 cd04125 RabA_like RabA-like su 99.8 1E-18 2.3E-23 156.7 15.6 158 164-360 1-166 (188)
108 PLN00223 ADP-ribosylation fact 99.8 1.3E-18 2.9E-23 155.6 16.2 153 163-357 17-179 (181)
109 PLN03118 Rab family protein; P 99.8 1.7E-18 3.6E-23 158.5 16.9 157 162-358 13-179 (211)
110 cd04123 Rab21 Rab21 subfamily. 99.8 1.9E-18 4E-23 149.7 16.1 152 165-355 2-161 (162)
111 cd01875 RhoG RhoG subfamily. 99.8 1.1E-18 2.4E-23 157.4 15.1 154 164-357 4-178 (191)
112 cd00879 Sar1 Sar1 subfamily. 99.8 1.5E-18 3.2E-23 155.6 15.7 151 163-355 19-190 (190)
113 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.3E-18 2.9E-23 155.7 15.4 155 163-357 3-171 (183)
114 cd04156 ARLTS1 ARLTS1 subfamil 99.8 1.1E-18 2.3E-23 151.7 14.1 147 165-353 1-159 (160)
115 cd04131 Rnd Rnd subfamily. Th 99.8 1.8E-18 3.9E-23 154.5 15.7 151 164-354 2-174 (178)
116 cd00880 Era_like Era (E. coli 99.8 3.8E-18 8.3E-23 145.6 17.1 155 168-355 1-163 (163)
117 PTZ00133 ADP-ribosylation fact 99.8 2E-18 4.3E-23 154.6 15.9 153 163-357 17-179 (182)
118 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 1.5E-18 3.3E-23 155.5 15.0 152 163-354 5-178 (182)
119 cd04135 Tc10 TC10 subfamily. 99.8 2.3E-18 5E-23 151.8 15.9 151 165-355 2-173 (174)
120 cd01870 RhoA_like RhoA-like su 99.8 2.4E-18 5.1E-23 151.9 16.0 152 164-355 2-174 (175)
121 cd01893 Miro1 Miro1 subfamily. 99.8 2E-18 4.4E-23 151.7 15.4 151 165-356 2-164 (166)
122 cd04117 Rab15 Rab15 subfamily. 99.8 3.6E-18 7.9E-23 149.5 16.9 151 165-354 2-160 (161)
123 KOG0084 GTPase Rab1/YPT1, smal 99.8 1.3E-18 2.8E-23 153.1 13.7 160 161-359 7-175 (205)
124 cd00157 Rho Rho (Ras homology) 99.8 1.3E-18 2.8E-23 152.6 13.8 150 164-353 1-170 (171)
125 KOG0092 GTPase Rab5/YPT51 and 99.8 1.2E-18 2.7E-23 152.7 13.3 160 163-361 5-172 (200)
126 cd04115 Rab33B_Rab33A Rab33B/R 99.8 3.4E-18 7.4E-23 150.8 16.4 156 163-356 2-169 (170)
127 cd00878 Arf_Arl Arf (ADP-ribos 99.8 3E-18 6.5E-23 148.7 15.7 147 165-353 1-157 (158)
128 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 2.7E-18 5.9E-23 159.5 16.3 155 163-357 13-189 (232)
129 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 3.7E-18 8E-23 151.1 16.4 153 165-357 2-166 (170)
130 cd04130 Wrch_1 Wrch-1 subfamil 99.8 3E-18 6.4E-23 151.6 15.8 149 164-352 1-170 (173)
131 cd04177 RSR1 RSR1 subgroup. R 99.8 4.2E-18 9.2E-23 149.8 16.4 152 164-355 2-163 (168)
132 cd04126 Rab20 Rab20 subfamily. 99.8 3.6E-18 7.8E-23 157.6 16.5 151 165-357 2-191 (220)
133 cd00876 Ras Ras family. The R 99.8 2.5E-18 5.5E-23 148.5 14.6 150 165-354 1-159 (160)
134 cd00154 Rab Rab family. Rab G 99.8 1.8E-18 4E-23 148.3 13.6 149 165-352 2-158 (159)
135 KOG1489 Predicted GTP-binding 99.8 1.7E-18 3.6E-23 162.4 13.6 159 163-354 196-365 (366)
136 TIGR00487 IF-2 translation ini 99.8 4E-18 8.7E-23 177.3 17.8 151 162-353 86-247 (587)
137 PRK05306 infB translation init 99.8 4.1E-18 8.9E-23 181.4 18.0 154 160-354 287-450 (787)
138 cd04114 Rab30 Rab30 subfamily. 99.8 7.1E-18 1.5E-22 147.9 16.5 154 163-355 7-168 (169)
139 cd04137 RheB Rheb (Ras Homolog 99.8 6.3E-18 1.4E-22 150.1 16.3 156 165-360 3-167 (180)
140 cd01896 DRG The developmentall 99.8 7.2E-18 1.6E-22 157.0 17.4 157 165-356 2-226 (233)
141 cd04143 Rhes_like Rhes_like su 99.8 4.5E-18 9.7E-23 159.7 16.0 152 165-356 2-171 (247)
142 PLN03110 Rab GTPase; Provision 99.8 8.9E-18 1.9E-22 154.5 17.7 157 162-357 11-175 (216)
143 cd04128 Spg1 Spg1p. Spg1p (se 99.8 7.1E-18 1.5E-22 151.1 16.5 154 165-359 2-169 (182)
144 PRK09554 feoB ferrous iron tra 99.8 1E-17 2.2E-22 179.0 20.3 159 164-356 4-168 (772)
145 cd04111 Rab39 Rab39 subfamily. 99.8 6.5E-18 1.4E-22 154.9 16.2 157 164-359 3-169 (211)
146 COG0370 FeoB Fe2+ transport sy 99.8 6.1E-18 1.3E-22 173.4 17.4 157 164-359 4-167 (653)
147 cd01892 Miro2 Miro2 subfamily. 99.8 9.8E-18 2.1E-22 148.1 16.6 154 163-356 4-166 (169)
148 PRK15467 ethanolamine utilizat 99.8 4E-18 8.6E-23 149.3 13.9 146 165-360 3-151 (158)
149 COG1163 DRG Predicted GTPase [ 99.8 7.5E-18 1.6E-22 158.7 16.6 166 156-356 56-289 (365)
150 cd04161 Arl2l1_Arl13_like Arl2 99.8 4.3E-18 9.4E-23 150.0 14.0 147 165-353 1-166 (167)
151 smart00176 RAN Ran (Ras-relate 99.8 3.8E-18 8.3E-23 155.2 13.8 150 169-358 1-156 (200)
152 KOG0078 GTP-binding protein SE 99.8 8.2E-18 1.8E-22 149.9 15.2 160 159-357 8-175 (207)
153 cd04148 RGK RGK subfamily. Th 99.8 9.5E-18 2.1E-22 154.9 15.9 152 164-356 1-163 (221)
154 cd04155 Arl3 Arl3 subfamily. 99.8 1.5E-17 3.3E-22 146.5 16.2 149 163-353 14-172 (173)
155 cd04116 Rab9 Rab9 subfamily. 99.8 8.8E-18 1.9E-22 147.7 14.6 153 163-354 5-169 (170)
156 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 1.1E-17 2.4E-22 147.1 15.0 147 166-353 2-163 (164)
157 TIGR02528 EutP ethanolamine ut 99.8 5.5E-18 1.2E-22 144.7 12.7 136 165-352 2-141 (142)
158 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 1.2E-17 2.6E-22 146.5 14.3 160 163-361 22-190 (221)
159 cd04159 Arl10_like Arl10-like 99.8 1.7E-17 3.7E-22 142.4 15.0 147 166-353 2-158 (159)
160 cd01884 EF_Tu EF-Tu subfamily. 99.8 6.7E-18 1.5E-22 153.0 13.0 142 164-345 3-172 (195)
161 PF01926 MMR_HSR1: 50S ribosom 99.8 1.4E-17 2.9E-22 137.9 13.8 116 165-312 1-116 (116)
162 CHL00189 infB translation init 99.8 8.8E-18 1.9E-22 177.4 15.8 154 161-355 242-409 (742)
163 cd01888 eIF2_gamma eIF2-gamma 99.8 1.2E-17 2.6E-22 152.2 14.2 92 265-357 99-200 (203)
164 TIGR00475 selB selenocysteine- 99.8 1.2E-17 2.5E-22 174.4 15.5 155 165-359 2-169 (581)
165 TIGR00231 small_GTP small GTP- 99.8 4.2E-17 9.1E-22 139.1 16.3 150 164-352 2-160 (161)
166 PLN03108 Rab family protein; P 99.8 4.2E-17 9.1E-22 149.4 17.4 157 163-358 6-170 (210)
167 cd04166 CysN_ATPS CysN_ATPS su 99.7 7.1E-18 1.5E-22 154.3 11.6 144 165-348 1-186 (208)
168 cd04103 Centaurin_gamma Centau 99.7 4E-17 8.6E-22 142.9 15.3 144 165-354 2-157 (158)
169 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 3.1E-17 6.6E-22 151.5 14.8 153 164-356 2-176 (222)
170 PF00025 Arf: ADP-ribosylation 99.7 3.1E-17 6.7E-22 146.1 14.2 151 163-355 14-175 (175)
171 TIGR00437 feoB ferrous iron tr 99.7 3.3E-17 7.1E-22 171.2 16.5 149 170-355 1-154 (591)
172 TIGR00491 aIF-2 translation in 99.7 3.7E-17 8.1E-22 169.9 16.8 152 163-356 4-216 (590)
173 cd01876 YihA_EngB The YihA (En 99.7 1.1E-16 2.4E-21 138.7 16.9 160 166-355 2-170 (170)
174 cd04129 Rho2 Rho2 subfamily. 99.7 7.4E-17 1.6E-21 144.8 15.9 153 165-357 3-174 (187)
175 cd01873 RhoBTB RhoBTB subfamil 99.7 4.6E-17 1E-21 147.5 14.4 151 164-354 3-194 (195)
176 KOG0462 Elongation factor-type 99.7 2.8E-17 6.1E-22 163.3 13.5 182 158-379 55-258 (650)
177 COG0532 InfB Translation initi 99.7 4.2E-17 9E-22 163.1 14.3 154 162-356 4-170 (509)
178 PF00071 Ras: Ras family; Int 99.7 8.5E-17 1.8E-21 140.0 14.5 152 165-356 1-161 (162)
179 PRK12317 elongation factor 1-a 99.7 4E-17 8.7E-22 164.9 13.7 146 162-347 5-196 (425)
180 KOG0394 Ras-related GTPase [Ge 99.7 6.5E-17 1.4E-21 140.7 12.6 160 161-359 7-181 (210)
181 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.9E-16 6.2E-21 142.2 17.6 165 165-357 2-185 (196)
182 TIGR01393 lepA GTP-binding pro 99.7 1E-16 2.2E-21 167.5 16.3 156 163-358 3-182 (595)
183 COG1162 Predicted GTPases [Gen 99.7 3.3E-18 7.1E-23 161.7 4.2 144 39-226 80-231 (301)
184 PRK10512 selenocysteinyl-tRNA- 99.7 1.2E-16 2.5E-21 167.5 16.1 154 165-358 2-168 (614)
185 KOG1490 GTP-binding protein CR 99.7 9.3E-17 2E-21 158.2 13.5 213 108-361 124-346 (620)
186 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.3E-16 5E-21 146.0 14.6 149 165-353 1-220 (224)
187 COG0536 Obg Predicted GTPase [ 99.7 2E-16 4.3E-21 150.2 14.3 165 163-359 159-336 (369)
188 TIGR01394 TypA_BipA GTP-bindin 99.7 2E-16 4.4E-21 164.9 15.6 154 165-358 3-193 (594)
189 PRK05433 GTP-binding protein L 99.7 3.3E-16 7.1E-21 163.8 17.1 157 163-359 7-187 (600)
190 PTZ00132 GTP-binding nuclear p 99.7 5.3E-16 1.2E-20 142.3 16.5 158 161-359 7-171 (215)
191 KOG1145 Mitochondrial translat 99.7 3.2E-16 6.8E-21 155.9 15.4 156 159-355 149-315 (683)
192 cd00882 Ras_like_GTPase Ras-li 99.7 3.3E-16 7.2E-21 131.8 12.7 146 168-352 1-156 (157)
193 KOG0087 GTPase Rab11/YPT3, sma 99.7 2.5E-16 5.4E-21 140.1 12.1 154 162-354 13-174 (222)
194 cd01883 EF1_alpha Eukaryotic e 99.7 1.4E-16 3E-21 147.0 10.9 142 165-345 1-194 (219)
195 KOG0080 GTPase Rab18, small G 99.7 1.9E-16 4.2E-21 134.7 10.7 157 162-359 10-177 (209)
196 CHL00071 tufA elongation facto 99.7 2.9E-16 6.3E-21 157.8 13.8 142 162-343 11-180 (409)
197 PRK04004 translation initiatio 99.7 5E-16 1.1E-20 161.9 15.9 152 162-355 5-217 (586)
198 KOG0098 GTPase Rab2, small G p 99.7 3.3E-16 7.2E-21 136.5 11.9 159 162-359 5-171 (216)
199 PRK10218 GTP-binding protein; 99.7 7.1E-16 1.5E-20 160.9 16.4 156 163-358 5-197 (607)
200 PRK12289 GTPase RsgA; Reviewed 99.7 1.9E-17 4.1E-22 162.3 3.9 145 36-226 87-239 (352)
201 PRK12736 elongation factor Tu; 99.7 4.8E-16 1E-20 155.5 13.5 154 163-356 12-201 (394)
202 PF10662 PduV-EutP: Ethanolami 99.7 7.3E-16 1.6E-20 131.5 12.5 137 164-352 2-142 (143)
203 KOG0079 GTP-binding protein H- 99.7 2.7E-16 6E-21 132.0 9.1 156 163-358 8-171 (198)
204 PRK04000 translation initiatio 99.7 9.5E-16 2.1E-20 154.0 14.6 158 161-357 7-202 (411)
205 cd04168 TetM_like Tet(M)-like 99.7 1.6E-15 3.5E-20 141.5 15.0 113 165-317 1-130 (237)
206 TIGR03680 eif2g_arch translati 99.7 7.9E-16 1.7E-20 154.5 13.7 156 163-357 4-197 (406)
207 COG3596 Predicted GTPase [Gene 99.7 1.8E-15 3.9E-20 140.2 14.6 168 162-360 38-226 (296)
208 PRK09866 hypothetical protein; 99.7 4.7E-15 1E-19 151.8 19.0 86 268-353 254-350 (741)
209 PLN03127 Elongation factor Tu; 99.6 2.4E-15 5.2E-20 152.3 15.7 154 163-356 61-252 (447)
210 PRK12735 elongation factor Tu; 99.6 1.5E-15 3.3E-20 152.0 13.6 154 163-356 12-203 (396)
211 cd01899 Ygr210 Ygr210 subfamil 99.6 8E-15 1.7E-19 142.1 17.9 162 166-359 1-272 (318)
212 KOG0073 GTP-binding ADP-ribosy 99.6 5.4E-15 1.2E-19 126.4 13.9 153 163-357 16-179 (185)
213 cd01886 EF-G Elongation factor 99.6 2.3E-15 5E-20 143.1 12.5 114 165-318 1-131 (270)
214 PRK00049 elongation factor Tu; 99.6 2.8E-15 6.1E-20 150.0 13.4 154 163-356 12-203 (396)
215 cd04104 p47_IIGP_like p47 (47- 99.6 7.7E-15 1.7E-19 133.1 14.9 157 164-359 2-187 (197)
216 KOG0093 GTPase Rab3, small G p 99.6 3.2E-15 7E-20 125.5 10.9 159 162-360 20-187 (193)
217 TIGR00483 EF-1_alpha translati 99.6 3.5E-15 7.6E-20 150.9 13.3 146 162-346 6-197 (426)
218 TIGR00485 EF-Tu translation el 99.6 4.3E-15 9.3E-20 148.7 13.8 140 163-342 12-179 (394)
219 TIGR02034 CysN sulfate adenyly 99.6 2.6E-15 5.7E-20 150.7 12.1 143 165-346 2-187 (406)
220 cd01857 HSR1_MMR1 HSR1/MMR1. 99.6 4.4E-16 9.5E-21 133.7 5.2 123 43-222 16-139 (141)
221 TIGR00157 ribosome small subun 99.6 4.8E-16 1E-20 145.8 5.6 144 36-225 34-185 (245)
222 PRK05124 cysN sulfate adenylyl 99.6 3.7E-15 7.9E-20 152.2 12.5 147 163-348 27-217 (474)
223 PLN03126 Elongation factor Tu; 99.6 6.5E-15 1.4E-19 150.1 14.3 141 163-343 81-249 (478)
224 cd01858 NGP_1 NGP-1. Autoanti 99.6 8.3E-16 1.8E-20 134.3 6.7 133 53-221 24-157 (157)
225 PRK12288 GTPase RsgA; Reviewed 99.6 4.1E-16 8.9E-21 152.8 5.0 140 43-226 125-272 (347)
226 KOG0095 GTPase Rab30, small G 99.6 6.9E-15 1.5E-19 123.8 11.4 156 162-356 6-169 (213)
227 cd04167 Snu114p Snu114p subfam 99.6 8.5E-15 1.8E-19 134.3 12.7 112 165-316 2-136 (213)
228 PRK05506 bifunctional sulfate 99.6 7.6E-15 1.6E-19 155.2 12.9 145 163-346 24-211 (632)
229 COG2229 Predicted GTPase [Gene 99.6 1.8E-14 3.9E-19 125.9 12.5 153 163-354 10-176 (187)
230 COG0481 LepA Membrane GTPase L 99.6 3.2E-15 7E-20 146.7 8.4 177 162-378 8-208 (603)
231 cd04169 RF3 RF3 subfamily. Pe 99.6 2.8E-14 6.1E-19 135.4 14.3 116 164-319 3-139 (267)
232 KOG0091 GTPase Rab39, small G 99.6 2.1E-14 4.5E-19 122.7 11.7 155 163-356 8-173 (213)
233 PRK12739 elongation factor G; 99.6 2.2E-14 4.8E-19 153.0 14.6 116 162-317 7-139 (691)
234 PTZ00141 elongation factor 1- 99.6 1.3E-14 2.7E-19 147.2 12.1 144 163-346 7-203 (446)
235 PTZ00327 eukaryotic translatio 99.6 2.4E-14 5.2E-19 145.0 13.9 158 162-358 33-235 (460)
236 cd04170 EF-G_bact Elongation f 99.6 1.3E-14 2.8E-19 137.8 10.8 149 165-353 1-170 (268)
237 PRK00741 prfC peptide chain re 99.6 5.1E-14 1.1E-18 145.2 15.8 115 163-317 10-145 (526)
238 PRK00007 elongation factor G; 99.6 5.1E-14 1.1E-18 150.3 15.8 116 162-317 9-141 (693)
239 KOG0395 Ras-related GTPase [Ge 99.6 6.1E-14 1.3E-18 127.1 14.0 155 163-357 3-166 (196)
240 PRK09602 translation-associate 99.6 1.2E-13 2.7E-18 137.7 17.4 163 164-359 2-274 (396)
241 KOG0075 GTP-binding ADP-ribosy 99.6 9.1E-15 2E-19 122.8 7.4 151 165-356 22-182 (186)
242 PRK13351 elongation factor G; 99.5 4.6E-14 9.9E-19 150.8 14.4 116 162-317 7-139 (687)
243 cd04105 SR_beta Signal recogni 99.5 6E-14 1.3E-18 127.9 12.6 111 165-317 2-123 (203)
244 KOG0070 GTP-binding ADP-ribosy 99.5 3.5E-14 7.6E-19 124.3 10.4 155 161-357 15-179 (181)
245 KOG0086 GTPase Rab4, small G p 99.5 5.4E-14 1.2E-18 118.9 10.9 157 162-359 8-174 (214)
246 TIGR00484 EF-G translation elo 99.5 7.9E-14 1.7E-18 148.9 14.8 140 162-341 9-171 (689)
247 cd01853 Toc34_like Toc34-like 99.5 1.5E-13 3.3E-18 129.0 14.8 128 163-318 31-164 (249)
248 KOG0410 Predicted GTP binding 99.5 1.4E-13 3.1E-18 129.6 13.6 161 161-360 176-345 (410)
249 PF08477 Miro: Miro-like prote 99.5 3.8E-14 8.1E-19 117.2 8.6 112 165-314 1-119 (119)
250 cd04102 RabL3 RabL3 (Rab-like3 99.5 2.4E-13 5.2E-18 123.8 14.6 139 165-344 2-178 (202)
251 cd01885 EF2 EF2 (for archaea a 99.5 8.9E-14 1.9E-18 128.4 11.3 112 165-316 2-138 (222)
252 PF04548 AIG1: AIG1 family; I 99.5 2E-13 4.3E-18 125.4 13.4 168 165-360 2-190 (212)
253 KOG0088 GTPase Rab21, small G 99.5 4E-14 8.6E-19 120.4 7.7 156 162-358 12-177 (218)
254 KOG0083 GTPase Rab26/Rab37, sm 99.5 1.2E-14 2.5E-19 120.2 4.3 154 168-359 2-163 (192)
255 cd01849 YlqF_related_GTPase Yl 99.5 2E-14 4.3E-19 125.4 5.9 127 67-221 28-155 (155)
256 KOG1144 Translation initiation 99.5 6.2E-14 1.3E-18 143.3 10.0 159 160-359 472-690 (1064)
257 TIGR00991 3a0901s02IAP34 GTP-b 99.5 3.3E-13 7.1E-18 129.1 14.0 125 163-318 38-168 (313)
258 TIGR00503 prfC peptide chain r 99.5 5E-13 1.1E-17 137.9 16.4 114 163-316 11-145 (527)
259 cd01854 YjeQ_engC YjeQ/EngC. 99.5 1.1E-14 2.5E-19 139.6 3.9 143 37-225 77-227 (287)
260 KOG1424 Predicted GTP-binding 99.5 2.3E-14 4.9E-19 142.1 5.0 169 47-226 184-374 (562)
261 cd01850 CDC_Septin CDC/Septin. 99.5 6.1E-13 1.3E-17 126.9 14.6 138 163-319 4-159 (276)
262 PLN00043 elongation factor 1-a 99.5 2E-13 4.4E-18 138.4 11.8 144 163-346 7-203 (447)
263 COG1100 GTPase SAR1 and relate 99.5 8.3E-13 1.8E-17 120.8 14.7 155 164-357 6-186 (219)
264 PTZ00258 GTP-binding protein; 99.5 1E-12 2.2E-17 130.1 16.2 89 163-283 21-126 (390)
265 PRK00098 GTPase RsgA; Reviewed 99.5 2.4E-14 5.1E-19 138.1 3.9 139 41-224 83-229 (298)
266 COG1217 TypA Predicted membran 99.5 8.6E-13 1.9E-17 129.5 14.6 158 163-360 5-199 (603)
267 cd04178 Nucleostemin_like Nucl 99.5 3.8E-14 8.3E-19 125.9 4.5 57 162-221 116-172 (172)
268 KOG0081 GTPase Rab27, small G 99.5 5.2E-14 1.1E-18 119.7 5.0 153 164-356 10-181 (219)
269 TIGR03596 GTPase_YlqF ribosome 99.5 6.8E-14 1.5E-18 133.5 6.5 138 55-224 39-176 (276)
270 PRK09563 rbgA GTPase YlqF; Rev 99.5 9.6E-14 2.1E-18 133.2 7.3 138 56-225 43-180 (287)
271 PRK12740 elongation factor G; 99.4 6.1E-13 1.3E-17 141.8 13.0 109 169-317 1-126 (668)
272 PLN00023 GTP-binding protein; 99.4 1.2E-12 2.6E-17 126.1 12.8 122 157-318 15-166 (334)
273 COG5256 TEF1 Translation elong 99.4 7.2E-13 1.6E-17 129.1 10.7 147 162-347 6-202 (428)
274 PTZ00099 rab6; Provisional 99.4 1.8E-12 4E-17 115.5 12.0 92 268-359 48-145 (176)
275 PRK13768 GTPase; Provisional 99.4 3.3E-12 7.2E-17 120.4 13.6 85 273-357 129-248 (253)
276 PRK09601 GTP-binding protein Y 99.4 5.6E-12 1.2E-16 123.6 15.5 88 164-283 3-107 (364)
277 PRK14845 translation initiatio 99.4 2.5E-12 5.3E-17 140.4 14.3 142 174-356 472-673 (1049)
278 cd01856 YlqF YlqF. Proteins o 99.4 2.8E-13 6E-18 120.1 5.5 125 68-221 46-170 (171)
279 cd01855 YqeH YqeH. YqeH is an 99.4 3E-13 6.5E-18 121.8 5.8 118 67-221 60-190 (190)
280 cd01859 MJ1464 MJ1464. This f 99.4 5.9E-13 1.3E-17 115.9 6.9 126 56-221 31-156 (156)
281 cd01882 BMS1 Bms1. Bms1 is an 99.4 8.9E-12 1.9E-16 115.5 14.8 133 162-342 38-182 (225)
282 KOG0076 GTP-binding ADP-ribosy 99.4 7E-13 1.5E-17 114.6 6.5 157 163-358 17-189 (197)
283 COG1161 Predicted GTPases [Gen 99.4 2.7E-13 5.9E-18 132.0 4.2 149 46-226 43-192 (322)
284 KOG0393 Ras-related small GTPa 99.4 2.2E-12 4.7E-17 115.6 9.5 155 163-357 4-180 (198)
285 PF00350 Dynamin_N: Dynamin fa 99.4 6.6E-12 1.4E-16 110.2 11.9 67 212-313 102-168 (168)
286 KOG0097 GTPase Rab14, small G 99.3 8.5E-12 1.8E-16 104.3 10.8 150 162-351 10-168 (215)
287 TIGR02836 spore_IV_A stage IV 99.3 3.2E-11 6.9E-16 118.4 16.3 184 162-358 16-236 (492)
288 KOG1486 GTP-binding protein DR 99.3 6.1E-12 1.3E-16 114.9 10.6 165 157-356 56-288 (364)
289 PRK09435 membrane ATPase/prote 99.3 3E-11 6.6E-16 117.5 15.5 91 270-366 167-270 (332)
290 KOG0072 GTP-binding ADP-ribosy 99.3 5.8E-12 1.3E-16 105.7 8.9 153 163-357 18-180 (182)
291 KOG0071 GTP-binding ADP-ribosy 99.3 7.1E-12 1.5E-16 104.7 9.1 152 163-356 17-178 (180)
292 PRK07560 elongation factor EF- 99.3 8.8E-12 1.9E-16 133.9 11.6 115 163-317 20-153 (731)
293 COG3276 SelB Selenocysteine-sp 99.3 1.4E-11 3E-16 121.0 11.5 152 165-356 2-162 (447)
294 KOG4252 GTP-binding protein [S 99.3 1.1E-12 2.4E-17 113.7 3.4 154 163-356 20-181 (246)
295 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 6.1E-11 1.3E-15 109.9 15.0 160 165-358 1-178 (232)
296 TIGR03597 GTPase_YqeH ribosome 99.3 9.9E-13 2.2E-17 130.0 3.2 180 67-317 89-280 (360)
297 KOG3883 Ras family small GTPas 99.3 1.1E-10 2.4E-15 99.0 14.7 170 163-369 9-188 (198)
298 TIGR00490 aEF-2 translation el 99.3 1.2E-11 2.7E-16 132.5 11.4 115 163-317 19-152 (720)
299 COG4917 EutP Ethanolamine util 99.3 8.5E-12 1.8E-16 102.5 7.7 139 165-354 3-144 (148)
300 PTZ00416 elongation factor 2; 99.3 1.1E-11 2.3E-16 134.8 10.9 114 163-316 19-157 (836)
301 TIGR00993 3a0901s04IAP86 chlor 99.3 1.3E-10 2.8E-15 120.0 17.6 127 162-317 117-250 (763)
302 PLN00116 translation elongatio 99.3 1.8E-11 3.9E-16 133.2 11.8 115 162-316 18-163 (843)
303 KOG2486 Predicted GTPase [Gene 99.3 2.2E-11 4.7E-16 113.0 10.5 170 155-354 128-314 (320)
304 PRK13796 GTPase YqeH; Provisio 99.3 4.4E-12 9.5E-17 125.7 5.4 128 58-223 86-222 (365)
305 COG2895 CysN GTPases - Sulfate 99.3 1.3E-11 2.8E-16 117.8 8.0 145 163-346 6-193 (431)
306 KOG1532 GTPase XAB1, interacts 99.2 1.1E-10 2.4E-15 108.1 13.4 90 272-363 147-271 (366)
307 smart00053 DYNc Dynamin, GTPas 99.2 2E-10 4.2E-15 107.1 14.8 56 262-319 151-208 (240)
308 KOG2423 Nucleolar GTPase [Gene 99.2 5E-12 1.1E-16 121.9 3.7 147 42-225 215-366 (572)
309 TIGR00750 lao LAO/AO transport 99.2 3.6E-10 7.8E-15 109.2 16.7 87 269-361 144-243 (300)
310 KOG0074 GTP-binding ADP-ribosy 99.2 3.2E-11 7E-16 101.0 8.0 153 162-356 16-179 (185)
311 PF00735 Septin: Septin; Inte 99.2 1.1E-10 2.3E-15 111.6 12.7 133 163-322 4-161 (281)
312 KOG1487 GTP-binding protein DR 99.2 3E-11 6.6E-16 110.9 8.3 165 157-356 53-281 (358)
313 PF05049 IIGP: Interferon-indu 99.2 1E-10 2.2E-15 114.9 12.5 159 163-360 35-222 (376)
314 PRK01889 GTPase RsgA; Reviewed 99.2 5.9E-12 1.3E-16 124.3 3.3 138 42-225 116-261 (356)
315 PF09439 SRPRB: Signal recogni 99.2 4E-11 8.6E-16 106.8 8.0 113 164-317 4-126 (181)
316 PF03193 DUF258: Protein of un 99.2 2.1E-12 4.6E-17 112.7 -0.2 92 96-226 4-102 (161)
317 KOG0461 Selenocysteine-specifi 99.2 1.9E-10 4.1E-15 109.5 12.8 153 164-356 8-193 (522)
318 COG0480 FusA Translation elong 99.2 1.1E-10 2.4E-15 123.2 12.3 118 162-319 9-144 (697)
319 cd01900 YchF YchF subfamily. 99.2 7.5E-11 1.6E-15 112.0 9.5 86 166-283 1-103 (274)
320 COG0012 Predicted GTPase, prob 99.2 4.6E-10 1E-14 108.9 14.3 89 164-284 3-109 (372)
321 KOG2484 GTPase [General functi 99.2 7.5E-12 1.6E-16 121.1 1.7 156 48-226 157-312 (435)
322 TIGR00073 hypB hydrogenase acc 99.1 2.6E-10 5.7E-15 104.2 10.9 77 273-355 124-206 (207)
323 KOG0090 Signal recognition par 99.1 2.7E-10 5.8E-15 102.1 10.2 149 164-355 39-238 (238)
324 KOG0458 Elongation factor 1 al 99.1 3.4E-10 7.4E-15 114.3 11.7 149 160-347 174-373 (603)
325 COG5257 GCD11 Translation init 99.1 3.9E-10 8.3E-15 106.6 10.3 159 162-359 9-205 (415)
326 KOG0077 Vesicle coat complex C 99.1 2.1E-10 4.6E-15 98.6 7.8 151 163-355 20-192 (193)
327 COG4108 PrfC Peptide chain rel 99.1 9.2E-10 2E-14 107.9 11.6 116 165-320 14-150 (528)
328 PF03029 ATP_bind_1: Conserved 99.1 8.7E-10 1.9E-14 103.0 10.8 82 273-356 123-237 (238)
329 TIGR00101 ureG urease accessor 99.1 1.6E-09 3.4E-14 98.6 12.2 78 273-356 113-196 (199)
330 PF03308 ArgK: ArgK protein; 99.1 1E-10 2.3E-15 108.5 4.1 92 269-366 139-240 (266)
331 KOG1707 Predicted Ras related/ 99.0 7.8E-10 1.7E-14 111.7 9.8 151 163-356 9-175 (625)
332 KOG0096 GTPase Ran/TC4/GSP1 (n 99.0 1.3E-09 2.9E-14 95.7 9.3 156 163-358 10-171 (216)
333 COG5019 CDC3 Septin family pro 99.0 6E-09 1.3E-13 100.6 14.6 145 163-334 23-199 (373)
334 COG0050 TufB GTPases - transla 99.0 8.8E-10 1.9E-14 103.1 8.5 161 163-363 12-208 (394)
335 PRK10463 hydrogenase nickel in 99.0 1.3E-09 2.8E-14 103.8 9.7 52 303-354 230-287 (290)
336 COG1703 ArgK Putative periplas 99.0 1.5E-09 3.3E-14 102.2 9.6 89 270-364 162-262 (323)
337 KOG0463 GTP-binding protein GP 99.0 6E-09 1.3E-13 100.3 11.8 104 212-353 220-355 (641)
338 cd01859 MJ1464 MJ1464. This f 99.0 4.4E-09 9.5E-14 91.5 9.9 90 266-357 6-97 (156)
339 KOG0468 U5 snRNP-specific prot 98.9 2.5E-09 5.5E-14 109.0 8.7 115 162-316 127-262 (971)
340 KOG2485 Conserved ATP/GTP bind 98.9 2.1E-09 4.5E-14 101.6 7.4 65 163-227 143-212 (335)
341 KOG1954 Endocytosis/signaling 98.9 9.5E-09 2.1E-13 98.8 11.7 132 161-321 56-229 (532)
342 KOG2655 Septin family protein 98.9 1.1E-08 2.5E-13 99.4 12.5 131 163-320 21-175 (366)
343 KOG1547 Septin CDC10 and relat 98.9 1.4E-08 3E-13 92.6 11.5 136 163-317 46-198 (336)
344 COG0378 HypB Ni2+-binding GTPa 98.8 4.4E-09 9.6E-14 93.5 6.2 75 273-355 117-200 (202)
345 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.7E-08 6E-13 86.7 9.2 90 267-356 3-95 (157)
346 COG5258 GTPBP1 GTPase [General 98.7 5.1E-08 1.1E-12 94.4 9.9 81 271-353 225-336 (527)
347 TIGR00092 GTP-binding protein 98.7 5.1E-08 1.1E-12 95.9 9.7 89 164-283 3-108 (368)
348 KOG1143 Predicted translation 98.7 8.8E-08 1.9E-12 92.3 9.8 152 163-352 167-384 (591)
349 cd01856 YlqF YlqF. Proteins o 98.6 1.2E-07 2.6E-12 83.9 8.9 89 264-356 11-101 (171)
350 cd01855 YqeH YqeH. YqeH is an 98.6 1.7E-07 3.7E-12 84.3 10.0 90 263-356 25-125 (190)
351 KOG0448 Mitofusin 1 GTPase, in 98.6 6.2E-07 1.4E-11 92.4 14.7 52 265-318 225-276 (749)
352 KOG0467 Translation elongation 98.6 9.6E-08 2.1E-12 99.1 8.7 115 160-315 6-136 (887)
353 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 2.1E-07 4.5E-12 79.7 8.2 80 264-343 3-84 (141)
354 KOG1491 Predicted GTP-binding 98.6 1.9E-07 4.1E-12 89.3 8.4 90 163-284 20-126 (391)
355 KOG3886 GTP-binding protein [S 98.6 1.7E-07 3.6E-12 85.2 7.6 145 164-341 5-164 (295)
356 cd01851 GBP Guanylate-binding 98.6 2.5E-07 5.3E-12 85.7 8.9 64 163-226 7-75 (224)
357 TIGR01425 SRP54_euk signal rec 98.6 3E-06 6.5E-11 85.2 17.1 120 163-318 100-254 (429)
358 KOG0464 Elongation factor G [T 98.6 3.2E-08 6.9E-13 96.4 2.8 123 160-322 34-173 (753)
359 TIGR03596 GTPase_YlqF ribosome 98.6 3.4E-07 7.3E-12 87.5 9.8 91 264-358 13-105 (276)
360 PRK10416 signal recognition pa 98.6 5.7E-07 1.2E-11 87.5 11.4 73 272-350 232-304 (318)
361 cd01849 YlqF_related_GTPase Yl 98.5 2.7E-07 5.8E-12 80.3 8.3 80 274-355 1-84 (155)
362 PRK14974 cell division protein 98.5 4.7E-07 1E-11 88.6 10.3 73 272-350 252-324 (336)
363 TIGR00064 ftsY signal recognit 98.5 1.3E-06 2.8E-11 83.3 12.8 73 272-350 190-262 (272)
364 KOG0460 Mitochondrial translat 98.5 2.4E-07 5.3E-12 88.5 7.5 156 161-356 52-245 (449)
365 TIGR00157 ribosome small subun 98.5 5.9E-07 1.3E-11 84.3 9.4 86 268-355 32-122 (245)
366 KOG0465 Mitochondrial elongati 98.5 1.8E-07 4E-12 95.1 5.2 123 162-324 38-177 (721)
367 KOG1673 Ras GTPases [General f 98.4 1.2E-06 2.7E-11 74.8 9.2 154 162-355 19-185 (205)
368 KOG4423 GTP-binding protein-li 98.4 3.5E-08 7.5E-13 86.6 -0.8 155 162-356 24-194 (229)
369 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.4E-06 3E-11 83.7 9.6 91 264-358 16-108 (287)
370 KOG0466 Translation initiation 98.3 4.7E-07 1E-11 85.4 4.2 80 273-356 149-241 (466)
371 PRK12289 GTPase RsgA; Reviewed 98.3 2.4E-06 5.3E-11 84.1 9.1 85 269-355 86-174 (352)
372 cd01854 YjeQ_engC YjeQ/EngC. 98.2 3.7E-06 8E-11 80.8 8.7 83 269-353 75-161 (287)
373 PRK00098 GTPase RsgA; Reviewed 98.2 4.1E-06 8.8E-11 81.0 8.6 83 269-353 77-164 (298)
374 cd00066 G-alpha G protein alph 98.2 9.7E-06 2.1E-10 79.0 9.8 74 206-317 156-242 (317)
375 KOG3859 Septins (P-loop GTPase 98.2 5E-06 1.1E-10 77.6 7.0 140 162-320 41-193 (406)
376 PRK00771 signal recognition pa 98.1 2.1E-05 4.5E-10 79.6 11.8 91 211-338 176-267 (437)
377 COG5192 BMS1 GTP-binding prote 98.1 7.6E-06 1.6E-10 82.8 8.1 131 162-340 68-210 (1077)
378 PRK12288 GTPase RsgA; Reviewed 98.1 1.6E-05 3.4E-10 78.4 9.8 85 270-356 118-208 (347)
379 PF00448 SRP54: SRP54-type pro 98.1 5.7E-06 1.2E-10 75.1 6.0 69 272-346 113-181 (196)
380 PF06858 NOG1: Nucleolar GTP-b 98.1 2.2E-05 4.7E-10 56.2 7.3 52 263-314 3-58 (58)
381 smart00275 G_alpha G protein a 98.0 2.2E-05 4.7E-10 77.3 9.8 53 265-317 200-265 (342)
382 cd03112 CobW_like The function 98.0 8.9E-06 1.9E-10 71.2 6.3 22 165-186 2-23 (158)
383 TIGR03597 GTPase_YqeH ribosome 98.0 3.7E-05 8E-10 76.3 10.5 86 265-354 56-151 (360)
384 PRK14722 flhF flagellar biosyn 98.0 0.0001 2.3E-09 73.0 13.5 24 163-186 137-160 (374)
385 PRK11889 flhF flagellar biosyn 98.0 4.8E-05 1E-09 75.5 11.0 23 163-185 241-263 (436)
386 PRK01889 GTPase RsgA; Reviewed 97.9 3.9E-05 8.5E-10 75.9 9.5 81 270-352 110-193 (356)
387 PRK10867 signal recognition pa 97.9 8.5E-05 1.8E-09 75.1 11.9 23 162-184 99-121 (433)
388 KOG0447 Dynamin-like GTP bindi 97.9 0.00011 2.3E-09 74.4 11.8 133 160-320 305-496 (980)
389 PRK12726 flagellar biosynthesi 97.9 8.1E-05 1.7E-09 73.6 10.7 24 162-185 205-228 (407)
390 KOG0469 Elongation factor 2 [T 97.9 2E-05 4.4E-10 78.8 6.3 113 163-315 19-162 (842)
391 PRK14723 flhF flagellar biosyn 97.9 0.00017 3.6E-09 77.3 13.4 73 271-347 292-366 (767)
392 smart00010 small_GTPase Small 97.9 1.8E-05 4E-10 65.0 5.0 70 271-345 45-115 (124)
393 cd03114 ArgK-like The function 97.9 3.4E-05 7.3E-10 66.8 6.4 21 166-186 2-22 (148)
394 TIGR00959 ffh signal recogniti 97.8 0.00013 2.9E-09 73.6 11.5 70 271-346 211-280 (428)
395 KOG3905 Dynein light intermedi 97.8 0.00028 6E-09 67.5 12.7 54 302-355 221-289 (473)
396 PRK13796 GTPase YqeH; Provisio 97.8 0.00011 2.5E-09 72.9 10.4 86 266-355 62-158 (365)
397 KOG1707 Predicted Ras related/ 97.8 0.0004 8.7E-09 71.1 14.3 154 159-356 421-583 (625)
398 PRK14721 flhF flagellar biosyn 97.8 9.2E-05 2E-09 74.5 9.7 24 163-186 191-214 (420)
399 KOG0459 Polypeptide release fa 97.8 4.5E-05 9.7E-10 74.7 6.4 150 161-349 77-279 (501)
400 PRK12727 flagellar biosynthesi 97.7 0.00043 9.4E-09 71.2 13.2 23 163-185 350-372 (559)
401 cd03115 SRP The signal recogni 97.7 0.00017 3.6E-09 63.7 9.0 60 271-334 111-170 (173)
402 TIGR03348 VI_IcmF type VI secr 97.7 0.00011 2.4E-09 83.2 9.7 128 163-318 111-258 (1169)
403 PRK06731 flhF flagellar biosyn 97.7 0.00027 5.8E-09 67.2 10.5 69 272-346 184-252 (270)
404 COG1618 Predicted nucleotide k 97.7 0.0012 2.6E-08 57.5 13.0 83 266-357 94-177 (179)
405 KOG3887 Predicted small GTPase 97.7 0.00032 7E-09 64.6 9.7 156 163-357 27-203 (347)
406 PRK06995 flhF flagellar biosyn 97.6 0.00075 1.6E-08 69.1 12.9 23 164-186 257-279 (484)
407 PRK12724 flagellar biosynthesi 97.6 0.00036 7.9E-09 69.9 10.0 22 164-185 224-245 (432)
408 PF05783 DLIC: Dynein light in 97.5 0.0011 2.3E-08 67.9 12.7 57 303-359 196-267 (472)
409 cd02038 FleN-like FleN is a me 97.5 0.00032 6.9E-09 59.9 7.4 106 167-316 4-110 (139)
410 cd04178 Nucleostemin_like Nucl 97.5 0.00029 6.2E-09 62.6 7.1 48 274-321 1-48 (172)
411 COG1419 FlhF Flagellar GTP-bin 97.5 0.00059 1.3E-08 67.7 9.9 24 163-186 203-226 (407)
412 COG0552 FtsY Signal recognitio 97.5 0.00037 8E-09 67.3 8.0 151 161-350 137-329 (340)
413 KOG1424 Predicted GTP-binding 97.5 0.00026 5.7E-09 71.4 7.1 78 263-340 165-244 (562)
414 COG3640 CooC CO dehydrogenase 97.5 0.00083 1.8E-08 61.8 9.5 46 269-316 152-198 (255)
415 PRK05703 flhF flagellar biosyn 97.4 0.00044 9.5E-09 70.1 8.5 22 164-185 222-243 (424)
416 PRK12723 flagellar biosynthesi 97.4 0.0016 3.5E-08 65.1 11.9 69 275-349 288-357 (388)
417 PF09547 Spore_IV_A: Stage IV 97.4 0.0024 5.3E-08 63.6 12.8 68 289-359 168-237 (492)
418 KOG0082 G-protein alpha subuni 97.4 0.00072 1.6E-08 66.2 8.9 114 205-356 189-344 (354)
419 COG0523 Putative GTPases (G3E 97.4 0.0015 3.2E-08 63.8 10.6 74 272-348 116-193 (323)
420 KOG1534 Putative transcription 97.2 0.00048 1E-08 62.3 5.0 21 165-185 5-25 (273)
421 KOG0780 Signal recognition par 97.2 0.0016 3.5E-08 63.8 8.8 24 162-185 100-123 (483)
422 KOG1533 Predicted GTPase [Gene 97.2 0.00061 1.3E-08 62.6 5.3 18 166-183 5-22 (290)
423 PF02492 cobW: CobW/HypB/UreG, 97.2 0.00051 1.1E-08 61.2 4.8 21 164-184 1-21 (178)
424 PRK11537 putative GTP-binding 97.1 0.0031 6.7E-08 61.5 10.1 24 163-186 4-27 (318)
425 PRK13695 putative NTPase; Prov 97.1 0.0088 1.9E-07 52.8 11.9 81 266-356 90-173 (174)
426 cd03111 CpaE_like This protein 97.0 0.0026 5.7E-08 51.6 7.3 47 266-312 58-106 (106)
427 KOG0781 Signal recognition par 97.0 0.0039 8.5E-08 62.7 9.2 68 270-337 494-565 (587)
428 cd02036 MinD Bacterial cell di 97.0 0.011 2.4E-07 51.8 11.4 49 268-317 80-128 (179)
429 COG3523 IcmF Type VI protein s 96.9 0.0056 1.2E-07 68.5 10.8 128 164-318 126-271 (1188)
430 COG0541 Ffh Signal recognition 96.9 0.0052 1.1E-07 61.4 9.2 73 210-318 182-254 (451)
431 PF13401 AAA_22: AAA domain; P 96.8 0.00076 1.6E-08 56.1 2.7 118 165-312 6-125 (131)
432 TIGR02475 CobW cobalamin biosy 96.8 0.0042 9.2E-08 61.2 8.0 24 163-186 4-27 (341)
433 KOG2484 GTPase [General functi 96.8 0.0063 1.4E-07 60.0 8.7 77 264-340 138-216 (435)
434 PRK14737 gmk guanylate kinase; 96.8 0.002 4.4E-08 57.9 4.9 53 163-217 4-56 (186)
435 COG1162 Predicted GTPases [Gen 96.8 0.0058 1.3E-07 58.6 8.2 92 271-364 78-175 (301)
436 PF05621 TniB: Bacterial TniB 96.7 0.0055 1.2E-07 58.8 8.0 126 160-312 58-189 (302)
437 COG0194 Gmk Guanylate kinase [ 96.6 0.0012 2.7E-08 58.7 2.5 51 165-218 6-56 (191)
438 PF03266 NTPase_1: NTPase; In 96.6 0.0017 3.7E-08 57.4 3.3 69 271-344 94-163 (168)
439 cd03110 Fer4_NifH_child This p 96.6 0.021 4.5E-07 50.5 10.2 50 267-318 109-158 (179)
440 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.016 3.4E-07 44.8 8.0 45 166-223 2-46 (99)
441 cd02042 ParA ParA and ParB of 96.5 0.0098 2.1E-07 47.6 6.8 71 166-284 2-73 (104)
442 PRK14738 gmk guanylate kinase; 96.5 0.0039 8.3E-08 56.9 4.8 39 163-201 13-51 (206)
443 COG1161 Predicted GTPases [Gen 96.4 0.0098 2.1E-07 58.1 7.7 83 264-350 26-111 (322)
444 KOG2743 Cobalamin synthesis pr 96.4 0.0086 1.9E-07 57.0 6.7 28 159-186 53-80 (391)
445 COG1116 TauB ABC-type nitrate/ 96.4 0.0025 5.5E-08 59.3 2.9 24 165-188 31-54 (248)
446 TIGR03263 guanyl_kin guanylate 96.3 0.0053 1.1E-07 54.2 4.8 55 165-221 3-57 (180)
447 PF07015 VirC1: VirC1 protein; 96.3 0.022 4.9E-07 52.6 8.6 83 268-350 101-188 (231)
448 KOG2423 Nucleolar GTPase [Gene 96.2 0.025 5.5E-07 55.8 9.1 92 265-356 206-300 (572)
449 cd00071 GMPK Guanosine monopho 96.2 0.0066 1.4E-07 51.7 4.5 53 166-220 2-55 (137)
450 PF13555 AAA_29: P-loop contai 96.1 0.0051 1.1E-07 45.0 3.0 21 165-185 25-45 (62)
451 PF13207 AAA_17: AAA domain; P 96.0 0.0055 1.2E-07 50.3 3.1 22 165-186 1-22 (121)
452 KOG4181 Uncharacterized conser 96.0 0.039 8.5E-07 53.6 9.0 25 163-187 188-212 (491)
453 PRK00300 gmk guanylate kinase; 96.0 0.0082 1.8E-07 54.2 4.3 23 165-187 7-29 (205)
454 PRK10751 molybdopterin-guanine 95.9 0.0086 1.9E-07 53.2 4.1 24 163-186 6-29 (173)
455 COG1136 SalX ABC-type antimicr 95.9 0.0055 1.2E-07 56.6 2.9 24 165-188 33-56 (226)
456 COG3840 ThiQ ABC-type thiamine 95.9 0.0066 1.4E-07 54.1 3.1 24 165-188 27-50 (231)
457 PF00005 ABC_tran: ABC transpo 95.9 0.007 1.5E-07 50.8 3.2 23 165-187 13-35 (137)
458 KOG0446 Vacuolar sorting prote 95.8 0.0088 1.9E-07 63.7 4.3 82 263-345 159-245 (657)
459 cd02037 MRP-like MRP (Multiple 95.8 0.041 8.8E-07 48.2 7.7 44 271-316 90-134 (169)
460 PLN02772 guanylate kinase 95.7 0.016 3.4E-07 57.8 5.0 53 163-217 135-188 (398)
461 COG3839 MalK ABC-type sugar tr 95.6 0.0088 1.9E-07 58.5 2.9 23 165-187 31-53 (338)
462 smart00072 GuKc Guanylate kina 95.6 0.099 2.2E-06 46.6 9.5 38 165-202 4-42 (184)
463 PHA02518 ParA-like protein; Pr 95.5 0.18 4E-06 45.3 11.3 52 265-316 91-146 (211)
464 PF00503 G-alpha: G-protein al 95.4 0.036 7.9E-07 55.5 6.9 78 202-317 226-317 (389)
465 cd03116 MobB Molybdenum is an 95.4 0.014 3E-07 51.2 3.3 22 165-186 3-24 (159)
466 COG1126 GlnQ ABC-type polar am 95.4 0.015 3.3E-07 53.1 3.6 23 165-187 30-52 (240)
467 PF02263 GBP: Guanylate-bindin 95.4 0.076 1.6E-06 50.3 8.5 62 163-224 21-87 (260)
468 PF13671 AAA_33: AAA domain; P 95.4 0.012 2.7E-07 49.5 2.9 21 166-186 2-22 (143)
469 KOG2749 mRNA cleavage and poly 95.3 0.093 2E-06 51.3 8.9 24 163-186 103-126 (415)
470 PRK10078 ribose 1,5-bisphospho 95.3 0.014 3.1E-07 52.1 3.1 22 165-186 4-25 (186)
471 COG2884 FtsE Predicted ATPase 95.2 0.014 3.1E-07 52.3 2.9 24 165-188 30-53 (223)
472 cd03238 ABC_UvrA The excision 95.2 0.015 3.2E-07 51.8 3.0 21 165-185 23-43 (176)
473 PRK08118 topology modulation p 95.2 0.016 3.6E-07 51.0 3.3 22 165-186 3-24 (167)
474 PRK07261 topology modulation p 95.2 0.015 3.3E-07 51.4 3.0 22 165-186 2-23 (171)
475 cd03225 ABC_cobalt_CbiO_domain 95.2 0.015 3.3E-07 52.7 3.1 23 165-187 29-51 (211)
476 cd02019 NK Nucleoside/nucleoti 95.2 0.018 3.9E-07 42.9 2.9 21 166-186 2-22 (69)
477 cd03222 ABC_RNaseL_inhibitor T 95.2 0.015 3.3E-07 51.8 2.9 23 165-187 27-49 (177)
478 cd03261 ABC_Org_Solvent_Resist 95.1 0.016 3.5E-07 53.6 3.1 23 165-187 28-50 (235)
479 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.1 0.017 3.6E-07 52.8 3.1 23 165-187 32-54 (218)
480 TIGR00960 3a0501s02 Type II (G 95.1 0.017 3.7E-07 52.7 3.1 23 165-187 31-53 (216)
481 COG4525 TauB ABC-type taurine 95.1 0.016 3.4E-07 52.3 2.7 23 165-187 33-55 (259)
482 KOG0057 Mitochondrial Fe/S clu 95.1 0.055 1.2E-06 55.6 6.9 50 266-317 499-550 (591)
483 cd03226 ABC_cobalt_CbiO_domain 95.1 0.018 3.8E-07 52.2 3.1 23 165-187 28-50 (205)
484 TIGR02322 phosphon_PhnN phosph 95.1 0.016 3.6E-07 51.1 2.8 22 165-186 3-24 (179)
485 PF05879 RHD3: Root hair defec 95.0 0.027 5.9E-07 61.1 4.9 55 169-223 1-60 (742)
486 cd03264 ABC_drug_resistance_li 95.0 0.017 3.7E-07 52.5 2.9 23 165-187 27-49 (211)
487 cd00820 PEPCK_HprK Phosphoenol 95.0 0.02 4.3E-07 46.7 2.9 20 165-184 17-36 (107)
488 TIGR01166 cbiO cobalt transpor 95.0 0.019 4.1E-07 51.3 3.1 23 165-187 20-42 (190)
489 TIGR02673 FtsE cell division A 95.0 0.019 4.1E-07 52.3 3.1 23 165-187 30-52 (214)
490 COG1124 DppF ABC-type dipeptid 95.0 0.027 5.7E-07 52.4 4.0 62 165-226 35-99 (252)
491 cd03265 ABC_DrrA DrrA is the A 95.0 0.019 4.2E-07 52.5 3.2 23 165-187 28-50 (220)
492 TIGR00235 udk uridine kinase. 95.0 0.018 4E-07 52.3 2.9 23 164-186 7-29 (207)
493 PF13521 AAA_28: AAA domain; P 95.0 0.015 3.2E-07 50.7 2.2 22 165-186 1-22 (163)
494 PF13238 AAA_18: AAA domain; P 95.0 0.02 4.3E-07 47.0 2.9 21 166-186 1-21 (129)
495 cd03224 ABC_TM1139_LivF_branch 95.0 0.02 4.3E-07 52.4 3.1 23 165-187 28-50 (222)
496 cd03259 ABC_Carb_Solutes_like 95.0 0.02 4.4E-07 52.1 3.1 23 165-187 28-50 (213)
497 TIGR03608 L_ocin_972_ABC putat 94.9 0.021 4.4E-07 51.7 3.1 23 165-187 26-48 (206)
498 cd03262 ABC_HisP_GlnQ_permease 94.9 0.021 4.4E-07 51.9 3.1 23 165-187 28-50 (213)
499 smart00382 AAA ATPases associa 94.9 0.026 5.6E-07 46.1 3.5 23 165-187 4-26 (148)
500 cd03292 ABC_FtsE_transporter F 94.9 0.021 4.6E-07 51.9 3.1 23 165-187 29-51 (214)
No 1
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.96 E-value=9.2e-29 Score=242.55 Aligned_cols=266 Identities=23% Similarity=0.302 Sum_probs=198.5
Q ss_pred cCCCCchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhhhhh
Q 016883 51 HYPLPLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSLLSR 130 (381)
Q Consensus 51 ~~~~~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l~~ 130 (381)
.-+.+.++.++|| ...+|+++|+||+|.... +....+.|..+..+++++|+.++.| +.++...+..
T Consensus 97 it~~D~~ia~~Lr--~~~kpviLvvNK~D~~~~---------e~~~~efyslG~g~~~~ISA~Hg~G---i~dLld~v~~ 162 (444)
T COG1160 97 ITPADEEIAKILR--RSKKPVILVVNKIDNLKA---------EELAYEFYSLGFGEPVPISAEHGRG---IGDLLDAVLE 162 (444)
T ss_pred CCHHHHHHHHHHH--hcCCCEEEEEEcccCchh---------hhhHHHHHhcCCCCceEeehhhccC---HHHHHHHHHh
Confidence 4578889999999 445999999999996511 1233477899999999999999999 4444443333
Q ss_pred hhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC
Q 016883 131 QLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE 210 (381)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~ 210 (381)
.+. ..+..... ......+++++|.||||||||+|+|++++...+++.+|||++.....+.+++
T Consensus 163 ~l~-~~e~~~~~----------------~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 163 LLP-PDEEEEEE----------------EETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG 225 (444)
T ss_pred hcC-Cccccccc----------------ccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC
Confidence 221 11100000 0023679999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH
Q 016883 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (381)
Q Consensus 211 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~ 290 (381)
..+.++||.|+.......+ .+|.+++ ..+...+..+|++++|+|+..+++.+|
T Consensus 226 ~~~~liDTAGiRrk~ki~e-~~E~~Sv--------------------------~rt~~aI~~a~vvllviDa~~~~~~qD 278 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITE-SVEKYSV--------------------------ARTLKAIERADVVLLVIDATEGISEQD 278 (444)
T ss_pred eEEEEEECCCCCccccccc-ceEEEee--------------------------hhhHhHHhhcCEEEEEEECCCCchHHH
Confidence 9999999999986544322 1233322 367788899999999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCccCCCcc--cchhHH------HhhCC-CceEEEecCCCCCHHHHHHHHHHHhhhcccc
Q 016883 291 EEIADWLRKNYMDKFIILAVNKCESPRKG--IMQVSE------FWSLG-FSPLPISAISGTGTGELLDLVCSELKKVEVC 361 (381)
Q Consensus 291 ~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~--~~~~~~------~~~~~-~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~~ 361 (381)
..+...+.+. ++++++|+||+|+..+. ..+..+ +...+ .|++++||++|.|++++++.+.+....+..-
T Consensus 279 ~~ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~r 356 (444)
T COG1160 279 LRIAGLIEEA--GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECATRR 356 (444)
T ss_pred HHHHHHHHHc--CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhccc
Confidence 9999999998 99999999999998752 222111 11223 3899999999999999999999887765543
Q ss_pred cchhhhHHHHHHHHH
Q 016883 362 IGFLLICNAITKIFH 376 (381)
Q Consensus 362 ~~~~~~~~~~~~~~~ 376 (381)
-....+-+.+..+.+
T Consensus 357 i~Ts~LN~~l~~a~~ 371 (444)
T COG1160 357 ISTSLLNRVLEDAVA 371 (444)
T ss_pred cCHHHHHHHHHHHHH
Confidence 333333344444433
No 2
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.94 E-value=4.7e-26 Score=229.97 Aligned_cols=257 Identities=24% Similarity=0.272 Sum_probs=179.2
Q ss_pred ccccccccc---CCCCchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHH
Q 016883 43 LLSLSLHKH---YPLPLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKD 119 (381)
Q Consensus 43 ~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~ 119 (381)
++++-++.. .....++.+++++. .+|+++|+||+|+...+.. ..+.|..+..+.+.+|+.++.+
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~~--~~piilVvNK~D~~~~~~~---------~~~~~~lg~~~~~~vSa~~g~g-- 147 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKS--GKPVILVANKIDGKKEDAV---------AAEFYSLGFGEPIPISAEHGRG-- 147 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHh--CCCEEEEEECccCCccccc---------HHHHHhcCCCCeEEEeCCcCCC--
Confidence 444444443 23345677888875 4899999999998643211 1123444555788999998887
Q ss_pred HHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCccc
Q 016883 120 AVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTR 199 (381)
Q Consensus 120 ~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~ 199 (381)
+.+....+...+...... ........+|+++|.+|+|||||+|+|++.....++..+++|.
T Consensus 148 -v~~ll~~i~~~l~~~~~~------------------~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~ 208 (429)
T TIGR03594 148 -IGDLLDAILELLPEEEEE------------------EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTR 208 (429)
T ss_pred -hHHHHHHHHHhcCccccc------------------ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceE
Confidence 333333332222110000 0011235699999999999999999999987777888999999
Q ss_pred ccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEE
Q 016883 200 DRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFL 279 (381)
Q Consensus 200 ~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~V 279 (381)
+.....+..++..+.+|||||+.+....... ++.+ ....+..++..+|++++|
T Consensus 209 ~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~-~e~~--------------------------~~~~~~~~~~~ad~~ilV 261 (429)
T TIGR03594 209 DSIDIPFERNGKKYLLIDTAGIRRKGKVTEG-VEKY--------------------------SVLRTLKAIERADVVLLV 261 (429)
T ss_pred CcEeEEEEECCcEEEEEECCCccccccchhh-HHHH--------------------------HHHHHHHHHHhCCEEEEE
Confidence 8887777778889999999999765443221 1111 123455678899999999
Q ss_pred EeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCC-CcccchhHH-H-----hh-CCCceEEEecCCCCCHHHHHHHH
Q 016883 280 VDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP-RKGIMQVSE-F-----WS-LGFSPLPISAISGTGTGELLDLV 351 (381)
Q Consensus 280 vD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~-~~~~~~~~~-~-----~~-~~~~~~~vSA~~g~gi~~l~~~i 351 (381)
+|+.++.+.++..++..+.+. ++|+++|+||+|+. +....+... . .. ...+++++||++|.|++++++++
T Consensus 262 ~D~~~~~~~~~~~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i 339 (429)
T TIGR03594 262 LDATEGITEQDLRIAGLILEA--GKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAI 339 (429)
T ss_pred EECCCCccHHHHHHHHHHHHc--CCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHH
Confidence 999999999998888887776 89999999999998 222111111 1 11 24689999999999999999999
Q ss_pred HHHhhhccc
Q 016883 352 CSELKKVEV 360 (381)
Q Consensus 352 ~~~l~~~~~ 360 (381)
.+.+.....
T Consensus 340 ~~~~~~~~~ 348 (429)
T TIGR03594 340 DEVYENANR 348 (429)
T ss_pred HHHHHHhcC
Confidence 988775543
No 3
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.94 E-value=2.6e-25 Score=227.05 Aligned_cols=245 Identities=24% Similarity=0.250 Sum_probs=169.2
Q ss_pred CchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhhhhhhhhh
Q 016883 55 PLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSLLSRQLII 134 (381)
Q Consensus 55 ~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~~ 134 (381)
...+.+++++. .+|+++|+||+|+.....+ ..+.|..+...++.+||.++.+ +.+.++.+...+..
T Consensus 135 ~~~i~~~l~~~--~~piilV~NK~Dl~~~~~~---------~~~~~~~g~~~~~~iSA~~g~g---i~eL~~~i~~~l~~ 200 (472)
T PRK03003 135 DEAVARVLRRS--GKPVILAANKVDDERGEAD---------AAALWSLGLGEPHPVSALHGRG---VGDLLDAVLAALPE 200 (472)
T ss_pred HHHHHHHHHHc--CCCEEEEEECccCCccchh---------hHHHHhcCCCCeEEEEcCCCCC---cHHHHHHHHhhccc
Confidence 35566777753 4899999999998532111 1122333444568899998887 44444444332211
Q ss_pred hhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEE
Q 016883 135 QDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFM 214 (381)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~ 214 (381)
..+ . . ......++|+++|.+|||||||+|+|++.....++..+++|++.....+.+++..+.
T Consensus 201 ~~~------~-~-----------~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~ 262 (472)
T PRK03003 201 VPR------V-G-----------SASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWR 262 (472)
T ss_pred ccc------c-c-----------cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEE
Confidence 000 0 0 001235799999999999999999999987667888999999888777888888899
Q ss_pred EEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHH
Q 016883 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA 294 (381)
Q Consensus 215 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~ 294 (381)
+|||||+......... .+.+ -.-.+..++..+|++++|+|++++.+.++..++
T Consensus 263 l~DTaG~~~~~~~~~~-~e~~--------------------------~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~ 315 (472)
T PRK03003 263 FVDTAGLRRRVKQASG-HEYY--------------------------ASLRTHAAIEAAEVAVVLIDASEPISEQDQRVL 315 (472)
T ss_pred EEECCCccccccccch-HHHH--------------------------HHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHH
Confidence 9999998643221110 0100 011234567899999999999999999988888
Q ss_pred HHHHHhCCCCeEEEEEeCccCCCcccchh----HH--Hhh-CCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 295 DWLRKNYMDKFIILAVNKCESPRKGIMQV----SE--FWS-LGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 295 ~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~----~~--~~~-~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
..+... ++|+++|+||+|+........ .. +.. ...+++++||++|.|++++++.+.+.+.....
T Consensus 316 ~~~~~~--~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 316 SMVIEA--GRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred HHHHHc--CCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 877765 899999999999976332111 11 111 23588999999999999999999998876554
No 4
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=4.6e-25 Score=223.25 Aligned_cols=244 Identities=24% Similarity=0.292 Sum_probs=172.3
Q ss_pred CCchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhhhhhhhh
Q 016883 54 LPLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSLLSRQLI 133 (381)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~ 133 (381)
...++.+|+++. .+|+++|+||+|+...+. ...+.+..+..+.+.+|+.++.+ +.+.++.+.....
T Consensus 97 ~~~~~~~~l~~~--~~piilv~NK~D~~~~~~---------~~~~~~~lg~~~~~~iSa~~g~g---v~~l~~~I~~~~~ 162 (435)
T PRK00093 97 ADEEIAKILRKS--NKPVILVVNKVDGPDEEA---------DAYEFYSLGLGEPYPISAEHGRG---IGDLLDAILEELP 162 (435)
T ss_pred HHHHHHHHHHHc--CCcEEEEEECccCccchh---------hHHHHHhcCCCCCEEEEeeCCCC---HHHHHHHHHhhCC
Confidence 345677888876 589999999999643111 11122333334578889888877 4444333322110
Q ss_pred hhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceE
Q 016883 134 IQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEF 213 (381)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~ 213 (381)
.. .. .......++|+++|.+|+|||||+|+|++.....++..+++|++.....+..++..+
T Consensus 163 ~~----~~---------------~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~ 223 (435)
T PRK00093 163 EE----EE---------------EDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKY 223 (435)
T ss_pred cc----cc---------------ccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeE
Confidence 00 00 000123579999999999999999999998877788899999988877777788889
Q ss_pred EEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHH
Q 016883 214 MLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEI 293 (381)
Q Consensus 214 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~ 293 (381)
.+|||||+........ .++.+ ....+..++..+|++++|+|+..+.+.++..+
T Consensus 224 ~lvDT~G~~~~~~~~~-~~e~~--------------------------~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i 276 (435)
T PRK00093 224 TLIDTAGIRRKGKVTE-GVEKY--------------------------SVIRTLKAIERADVVLLVIDATEGITEQDLRI 276 (435)
T ss_pred EEEECCCCCCCcchhh-HHHHH--------------------------HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHH
Confidence 9999999976544322 11111 12345567889999999999999999999888
Q ss_pred HHHHHHhCCCCeEEEEEeCccCCCcccchhHHH-------hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 294 ADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF-------WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 294 ~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~-------~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+..+.+. ++|+++|+||+|+.+......... .....+++++||++|.|++++++.+.+....+.
T Consensus 277 ~~~~~~~--~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 277 AGLALEA--GRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred HHHHHHc--CCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 8888776 899999999999985432222110 112458999999999999999999988776554
No 5
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.93 E-value=1e-24 Score=214.15 Aligned_cols=161 Identities=55% Similarity=0.846 Sum_probs=141.8
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
+.|+++|.||||||||+|+|++...+.++++||+|++..+....+.+..+.++||+|+..... +
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~--~-------------- 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE--D-------------- 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc--h--------------
Confidence 589999999999999999999999999999999999999999999999999999999986432 1
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~ 323 (381)
.+...+.+++..++..||+++||+|+..+++..|.++.+.+++. ++|+++|+||+|-. +.....
T Consensus 68 -------------~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~--~kpviLvvNK~D~~-~~e~~~ 131 (444)
T COG1160 68 -------------ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRS--KKPVILVVNKIDNL-KAEELA 131 (444)
T ss_pred -------------HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEEcccCc-hhhhhH
Confidence 12233456899999999999999999999999999999999965 89999999999987 333445
Q ss_pred HHHhhCCC-ceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 324 ~~~~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.+++.+++ .++++||.+|.|+.+|++.+.+.++
T Consensus 132 ~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 132 YEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred HHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 56777887 7899999999999999999999984
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=2e-24 Score=201.83 Aligned_cols=167 Identities=32% Similarity=0.474 Sum_probs=142.8
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
..|+++|.||||||||+|+|+|.+.+.+++.+.||++...+.+..++.++.|+||||+-...
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk------------------ 68 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK------------------ 68 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc------------------
Confidence 37899999999999999999999999999999999999999999999999999999997642
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc--c
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--M 321 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~--~ 321 (381)
..+..++.+.+...+..+|+++||+|+.+++...+..+++.+++. +.|+++++||+|...... .
T Consensus 69 ------------~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~--~~pvil~iNKID~~~~~~~l~ 134 (298)
T COG1159 69 ------------HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKT--KTPVILVVNKIDKVKPKTVLL 134 (298)
T ss_pred ------------hHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhc--CCCeEEEEEccccCCcHHHHH
Confidence 234456678899999999999999999999999999999999884 799999999999987665 2
Q ss_pred hhHHHhhC---CCceEEEecCCCCCHHHHHHHHHHHhhhccccc
Q 016883 322 QVSEFWSL---GFSPLPISAISGTGTGELLDLVCSELKKVEVCI 362 (381)
Q Consensus 322 ~~~~~~~~---~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~~~ 362 (381)
...+.... ...++++||++|.|++.|.+.+.+++++.+...
T Consensus 135 ~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~y 178 (298)
T COG1159 135 KLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYY 178 (298)
T ss_pred HHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcC
Confidence 33332222 227899999999999999999999999766433
No 7
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.92 E-value=3.4e-24 Score=210.96 Aligned_cols=162 Identities=33% Similarity=0.446 Sum_probs=141.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+++++|.||||||||+|+|++.+.+.+++.+|||++.....+.++|.++.++||.|+.+ ..+.+|.+|+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRe----t~d~VE~iGI----- 287 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE----TDDVVERIGI----- 287 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCccc----CccHHHHHHH-----
Confidence 4599999999999999999999999999999999999999999999999999999999975 3557888886
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
++++..++.||+++||+|++.+.+..+..++..+. .++|+++|+||+|+..+....
T Consensus 288 ---------------------eRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~---~~~~~i~v~NK~DL~~~~~~~ 343 (454)
T COG0486 288 ---------------------ERAKKAIEEADLVLFVLDASQPLDKEDLALIELLP---KKKPIIVVLNKADLVSKIELE 343 (454)
T ss_pred ---------------------HHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcc---cCCCEEEEEechhcccccccc
Confidence 68889999999999999999988888888777222 389999999999998865544
Q ss_pred hHHHhhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 323 ~~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.. ....+.+++.+||++|+|++.|.+.|.+.+...
T Consensus 344 ~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 344 SE-KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred hh-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 33 233455799999999999999999999998876
No 8
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.92 E-value=8.5e-24 Score=225.62 Aligned_cols=247 Identities=24% Similarity=0.267 Sum_probs=170.4
Q ss_pred CchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhhhhhhhhh
Q 016883 55 PLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSLLSRQLII 134 (381)
Q Consensus 55 ~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~~ 134 (381)
+..+.+++++. .+|+++|+||+|+...... ..+.|..+....+.+|+.++.+ +.+.+..+...+..
T Consensus 372 d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~~~---------~~~~~~lg~~~~~~iSA~~g~G---I~eLl~~i~~~l~~ 437 (712)
T PRK09518 372 DERIVRMLRRA--GKPVVLAVNKIDDQASEYD---------AAEFWKLGLGEPYPISAMHGRG---VGDLLDEALDSLKV 437 (712)
T ss_pred HHHHHHHHHhc--CCCEEEEEECcccccchhh---------HHHHHHcCCCCeEEEECCCCCC---chHHHHHHHHhccc
Confidence 34566777753 5999999999998532111 1122333444568899999888 44444444332211
Q ss_pred hhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEE
Q 016883 135 QDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFM 214 (381)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~ 214 (381)
.+ . . .........++|+++|.+|||||||+|+|++.....+++.++||++.....+.+++..+.
T Consensus 438 ~~----------~-~-----~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~ 501 (712)
T PRK09518 438 AE----------K-T-----SGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWL 501 (712)
T ss_pred cc----------c-c-----ccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEE
Confidence 00 0 0 000112235799999999999999999999988767888999999988777788888999
Q ss_pred EEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHH
Q 016883 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA 294 (381)
Q Consensus 215 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~ 294 (381)
+|||||+.+....... .+.+ -.-.+..++..+|++++|+|++++.+.++..++
T Consensus 502 liDTaG~~~~~~~~~~-~e~~--------------------------~~~r~~~~i~~advvilViDat~~~s~~~~~i~ 554 (712)
T PRK09518 502 FIDTAGIKRRQHKLTG-AEYY--------------------------SSLRTQAAIERSELALFLFDASQPISEQDLKVM 554 (712)
T ss_pred EEECCCcccCcccchh-HHHH--------------------------HHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH
Confidence 9999998643221110 0000 011345567899999999999999999988888
Q ss_pred HHHHHhCCCCeEEEEEeCccCCCcccchhHH--H-h---hC-CCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 295 DWLRKNYMDKFIILAVNKCESPRKGIMQVSE--F-W---SL-GFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 295 ~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~--~-~---~~-~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
..+.+. ++|+++|+||+|+.+....+... . . .. ..+++++||++|.|++++++.+.+.+..+..
T Consensus 555 ~~~~~~--~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 555 SMAVDA--GRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred HHHHHc--CCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 777665 89999999999997643322211 1 1 11 2377999999999999999999998876553
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=4.1e-24 Score=185.73 Aligned_cols=150 Identities=31% Similarity=0.455 Sum_probs=115.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|.||||||||+|+|+|.+ ..++++||+|.+...+.+.+++..+.++||||+.+......+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e-------------- 66 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE-------------- 66 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH--------------
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH--------------
Confidence 78999999999999999999998 689999999999999999999999999999999875443221
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHh--ccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch
Q 016883 245 GIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
++.+..++ ...|++++|+|+++ ...+..+...+.+. ++|+++|+||+|...+....
T Consensus 67 ------------------e~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~ 124 (156)
T PF02421_consen 67 ------------------ERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLEL--GIPVVVVLNKMDEAERKGIE 124 (156)
T ss_dssp ------------------HHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHT--TSSEEEEEETHHHHHHTTEE
T ss_pred ------------------HHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHc--CCCEEEEEeCHHHHHHcCCE
Confidence 12333443 57999999999986 23445677777777 99999999999987643222
Q ss_pred --hHH-HhhCCCceEEEecCCCCCHHHHHHHH
Q 016883 323 --VSE-FWSLGFSPLPISAISGTGTGELLDLV 351 (381)
Q Consensus 323 --~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i 351 (381)
... ...++.|++++||++|+|+++|++.|
T Consensus 125 id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 125 IDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp E-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred ECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 122 23568999999999999999999875
No 10
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=4.1e-23 Score=196.35 Aligned_cols=162 Identities=28% Similarity=0.406 Sum_probs=124.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|.+|||||||+|+|++...+.+++.++||++...+....++.++.+|||||+.....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~------------------ 63 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH------------------ 63 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc------------------
Confidence 68999999999999999999998778899999999877666666677899999999975321
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch-h
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-V 323 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~-~ 323 (381)
.+...+.+.+..++..+|++++|+|+++..... ..++..+... +.|+++|+||+|+....... .
T Consensus 64 ------------~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~~~~~ 128 (270)
T TIGR00436 64 ------------SLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNL--KRPVVLTRNKLDNKFKDKLLPL 128 (270)
T ss_pred ------------hHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhc--CCCEEEEEECeeCCCHHHHHHH
Confidence 111223345667889999999999999765443 4566666655 89999999999997543221 1
Q ss_pred HH-H-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 324 SE-F-WSLGF-SPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 324 ~~-~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.. + ...++ +++++||++|.|+++|+++|.+.+++.+
T Consensus 129 ~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 129 IDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred HHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence 11 1 11233 7899999999999999999999988654
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=2.3e-22 Score=196.98 Aligned_cols=165 Identities=27% Similarity=0.398 Sum_probs=129.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|.+|||||||+|+|++...+.+++.+++|++...+.+..++.++.||||||+.+...
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~---------------- 115 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG---------------- 115 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc----------------
Confidence 4589999999999999999999988777788888998887777788888999999999964221
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
.+...+.+.+..++..+|++++|+|+..++...+..++..++.. +.|.++|+||+|+.+....+
T Consensus 116 --------------~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~~~~ 179 (339)
T PRK15494 116 --------------SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL--NIVPIFLLNKIDIESKYLND 179 (339)
T ss_pred --------------cHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccccHHH
Confidence 11112334566678899999999999888887777788777765 67888999999987543222
Q ss_pred hHHHhh-C--CCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 323 VSEFWS-L--GFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 323 ~~~~~~-~--~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
...... . ..+++++||++|.|+++++++|.+.+++.+
T Consensus 180 ~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 180 IKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred HHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 222222 2 247899999999999999999999988654
No 12
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=5.6e-22 Score=170.99 Aligned_cols=156 Identities=56% Similarity=0.901 Sum_probs=121.4
Q ss_pred EEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCC
Q 016883 167 AIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (381)
Q Consensus 167 ~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
+++|.+|||||||+|+|++......+..+++|...........+..+.+|||||+.+... .
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~---~---------------- 61 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE---G---------------- 61 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh---H----------------
Confidence 478999999999999999986556677888888877777777888899999999976432 0
Q ss_pred chhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHH
Q 016883 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF 326 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~ 326 (381)
+...+.+.+...+..+|++++|+|+.++.+..+.++...++.. +.|+++|+||+|+...... ....
T Consensus 62 -----------~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~~~-~~~~ 127 (157)
T cd01894 62 -----------ISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKS--KKPVILVVNKVDNIKEEDE-AAEF 127 (157)
T ss_pred -----------HHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhc--CCCEEEEEECcccCChHHH-HHHH
Confidence 1111223445567889999999999988777777777777766 7999999999999875443 2223
Q ss_pred hhCCC-ceEEEecCCCCCHHHHHHHHHHHh
Q 016883 327 WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 327 ~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
...+. +++++||++|.|++++++++.+.+
T Consensus 128 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 128 YSLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred HhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 34455 789999999999999999998753
No 13
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.89 E-value=1.6e-21 Score=191.70 Aligned_cols=160 Identities=24% Similarity=0.265 Sum_probs=118.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe-CCceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
+.++|+++|.+|||||||+|+|++.. ..+.+.+++|.+.....+.+ ++..+.+|||||+.+. ..++.++.+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f----- 259 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAF----- 259 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHH-----
Confidence 35799999999999999999999987 46677888999888877777 5678999999998531 223333332
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH-HHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
+.+...+..+|++++|+|++++....+. .+...+... ..++|+++|+||+|+.+.
T Consensus 260 -----------------------~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 260 -----------------------RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE 316 (351)
T ss_pred -----------------------HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh
Confidence 2455678899999999999987665543 233344432 137899999999999764
Q ss_pred ccchhHHHhhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 319 GIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 319 ~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
.... .......+++++||++|.|+++|+++|.+.
T Consensus 317 ~~v~--~~~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 317 PRIE--RLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred HhHH--HHHhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 3221 111222468999999999999999998765
No 14
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.88 E-value=1.5e-21 Score=171.03 Aligned_cols=161 Identities=26% Similarity=0.330 Sum_probs=112.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
++|+++|.+|||||||+|+|.+... .++..+++|..........++..+.+|||||+.+........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~------------ 67 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNT------------ 67 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCch------------
Confidence 4789999999999999999998764 345566777777666666667889999999986432111100
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHH-hccccEEEEEEeCCCCCC---hhHHHHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 244 EGIPLATREAAVARMPSMIERQATAA-IEESCVIIFLVDGQAGLT---AADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~d~ii~VvD~~~~~~---~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
+....... ...+|++++|+|+++... .....++..++....+.|+++|+||+|+....
T Consensus 68 ------------------~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~ 129 (168)
T cd01897 68 ------------------IEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE 129 (168)
T ss_pred ------------------HHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchh
Confidence 00111111 123689999999987533 22245666666655589999999999997644
Q ss_pred cchh-HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 320 IMQV-SEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 320 ~~~~-~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.... ..+ ...+.+++++||++|+|++++++++.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 130 DLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred hHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 3221 122 22456899999999999999999998865
No 15
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=2.4e-21 Score=196.45 Aligned_cols=157 Identities=33% Similarity=0.446 Sum_probs=124.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|.+|||||||+|+|++...+.+++.+++|++.....+.+++..+.+|||||+.+.. +.++.+++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~----~~ie~~gi----- 285 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD----DEVEKIGI----- 285 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc----cHHHHHHH-----
Confidence 469999999999999999999998766788899999998888888888899999999996422 22333322
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
+.+..++..+|++++|+|++++.+..+..++.. ..++|+++|+||+|+.+.....
T Consensus 286 ---------------------~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~~~~piiiV~NK~DL~~~~~~~ 340 (449)
T PRK05291 286 ---------------------ERSREAIEEADLVLLVLDASEPLTEEDDEILEE----LKDKPVIVVLNKADLTGEIDLE 340 (449)
T ss_pred ---------------------HHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh----cCCCCcEEEEEhhhccccchhh
Confidence 345667889999999999998776665444433 3489999999999997643222
Q ss_pred hHHHhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 323 ~~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
...+.+++++||++|+|+++|+++|.+.+..
T Consensus 341 ----~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 341 ----EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred ----hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 2335678999999999999999999998865
No 16
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.87 E-value=5.2e-21 Score=170.17 Aligned_cols=178 Identities=24% Similarity=0.289 Sum_probs=135.9
Q ss_pred ccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCC-cccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCC
Q 016883 150 KRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (381)
Q Consensus 150 ~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~ 228 (381)
.++....+.|....+-|+|+|.||||||||||+|++.+ .+.++.+||.|+...+..+ +..+.++|.||++
T Consensus 11 ~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~---~~~~~lVDlPGYG------ 81 (200)
T COG0218 11 TSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV---DDELRLVDLPGYG------ 81 (200)
T ss_pred EecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe---cCcEEEEeCCCcc------
Confidence 34556678888899999999999999999999999965 5899999999999988655 3347999999984
Q ss_pred chhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEE
Q 016883 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIIL 308 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~iv 308 (381)
|-.-|-...+.+.+.+..|++.+ .+..++++++|+.++....|.++++++.+. ++|+++
T Consensus 82 --------------yAkv~k~~~e~w~~~i~~YL~~R-----~~L~~vvlliD~r~~~~~~D~em~~~l~~~--~i~~~v 140 (200)
T COG0218 82 --------------YAKVPKEVKEKWKKLIEEYLEKR-----ANLKGVVLLIDARHPPKDLDREMIEFLLEL--GIPVIV 140 (200)
T ss_pred --------------cccCCHHHHHHHHHHHHHHHhhc-----hhheEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEE
Confidence 32223333444444444444322 236788999999999999999999999998 999999
Q ss_pred EEeCccCCCcccchh----HH-Hhh--CCCc--eEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 309 AVNKCESPRKGIMQV----SE-FWS--LGFS--PLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 309 V~NK~Dl~~~~~~~~----~~-~~~--~~~~--~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
|+||+|..+...... .. ... .... ++..|+.++.|++++...|.+.+..
T Consensus 141 v~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 141 VLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred EEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 999999988644321 11 111 1222 7899999999999999999988754
No 17
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=5e-21 Score=195.63 Aligned_cols=162 Identities=44% Similarity=0.736 Sum_probs=129.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|.+|||||||+|+|++...+.+...+++|++.....+.+++..+.+|||||+..... .
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~---~------------ 102 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK---G------------ 102 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch---h------------
Confidence 5699999999999999999999987667788999999888888888888999999999863211 0
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
+...+...+..++..+|++++|+|++++.+..+..+...++.. ++|+++|+||+|+..... +
T Consensus 103 ---------------~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~--~~piilV~NK~Dl~~~~~-~ 164 (472)
T PRK03003 103 ---------------LQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRS--GKPVILAANKVDDERGEA-D 164 (472)
T ss_pred ---------------HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCCccch-h
Confidence 1112334566778899999999999998888888888888765 899999999999865322 2
Q ss_pred hHHHhhCCC-ceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 323 VSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 323 ~~~~~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
...++..++ .++++||++|.|+++|++++.+.+.+
T Consensus 165 ~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 165 AAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred hHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 223334444 45899999999999999999998865
No 18
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=1.3e-20 Score=171.16 Aligned_cols=162 Identities=27% Similarity=0.304 Sum_probs=113.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc-eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
+.++|+++|++|||||||+|++++... .....+++|.......+.+++. .+.+|||||+.+... ....+.+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~----- 111 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAF----- 111 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHH-----
Confidence 357999999999999999999999763 3444555666665555555554 899999999864211 1111111
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH-HHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
......+..+|++++|+|++++....+. .+...+... ..++|+++|+||+|+.+.
T Consensus 112 -----------------------~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 112 -----------------------RSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred -----------------------HHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 1223446789999999999987655543 344444432 236899999999999765
Q ss_pred ccchhHHHhhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 319 GIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 319 ~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.... ......+.+++++||++|.|+++++++|.+.+
T Consensus 169 ~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 169 EELE-ERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred HHHH-HHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 4333 22234456899999999999999999998753
No 19
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=8.3e-21 Score=185.26 Aligned_cols=164 Identities=27% Similarity=0.326 Sum_probs=125.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe-CCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
...|+++|.||||||||+|+|+... ..++++++||...+...+.+ ++..+.+|||||+.+.......
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~g----------- 225 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAG----------- 225 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcccc-----------
Confidence 4689999999999999999999876 56889999999999988877 4567999999999764432221
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh---CCCCeEEEEEeCccCCC
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN---YMDKFIILAVNKCESPR 317 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~---~~~~p~ivV~NK~Dl~~ 317 (381)
+...++++++.++++++|+|+++..+..+ ..|...+... +.++|+++|+||+|+.+
T Consensus 226 --------------------Lg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 226 --------------------LGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred --------------------HHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 12356677889999999999986544444 3455555543 24789999999999976
Q ss_pred cccchh--HHH--hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 318 KGIMQV--SEF--WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 318 ~~~~~~--~~~--~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
...... ... ...+.+++++||++++|+++++++|.+.+.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 286 EEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred chhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 442211 111 23457899999999999999999999988653
No 20
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.87 E-value=1.2e-20 Score=162.37 Aligned_cols=154 Identities=35% Similarity=0.457 Sum_probs=118.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|++|+|||||+|++.+.....++..+++|.......+...+..+.+|||||+.+...... ..
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~----~~--------- 69 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE----KI--------- 69 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH----HH---------
Confidence 78999999999999999999987666777888888777666777777899999999976432110 00
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~ 324 (381)
........+..+|++++|+|++++.+..+...+.. ..++|+++|+||+|+......
T Consensus 70 -----------------~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~~--- 125 (157)
T cd04164 70 -----------------GIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSEL--- 125 (157)
T ss_pred -----------------HHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcccc---
Confidence 01234456678999999999998777766555443 338999999999999865443
Q ss_pred HHhhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 325 EFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 325 ~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.......+++++||++|.|+++++++|.+.+
T Consensus 126 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 2233456899999999999999999998765
No 21
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=7.3e-21 Score=182.74 Aligned_cols=164 Identities=32% Similarity=0.454 Sum_probs=126.9
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
..|+++|.+|||||||+|+|++...+.++..+.||++........++.++.++||||+.+...
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~----------------- 68 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR----------------- 68 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh-----------------
Confidence 378999999999999999999998888888898888876665555667899999999865321
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCc-cc-c
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK-GI-M 321 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~-~~-~ 321 (381)
.+...+...+...+..+|++++|+|++++++..+..++..+... +.|+++|+||+|+... .. .
T Consensus 69 -------------~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~~l~ 133 (292)
T PRK00089 69 -------------ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV--KTPVILVLNKIDLVKDKEELL 133 (292)
T ss_pred -------------HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc--CCCEEEEEECCcCCCCHHHHH
Confidence 11122334566778899999999999987777777777777754 7899999999999842 22 2
Q ss_pred hhHHHhh---CCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 322 QVSEFWS---LGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 322 ~~~~~~~---~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
....... ...+++++||++|.|++++++++.+.+++..
T Consensus 134 ~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 134 PLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred HHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence 2222221 2347899999999999999999999987543
No 22
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=7.8e-21 Score=191.96 Aligned_cols=161 Identities=55% Similarity=0.888 Sum_probs=133.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|.+|||||||+|+|++...+.+++.+++|++.....+.+++..+.+|||||+.... .
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~---~--------------- 62 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD---D--------------- 62 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc---h---------------
Confidence 4799999999999999999998877888999999999888888899999999999985321 1
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~ 324 (381)
.+...+..++..++..+|++++|+|+..+.+..+.++...+++. ++|+++|+||+|+...... ..
T Consensus 63 ------------~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~--~~piilVvNK~D~~~~~~~-~~ 127 (429)
T TIGR03594 63 ------------GLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKS--GKPVILVANKIDGKKEDAV-AA 127 (429)
T ss_pred ------------hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh--CCCEEEEEECccCCccccc-HH
Confidence 11122345677788999999999999999999998898988886 8999999999998764432 23
Q ss_pred HHhhCCC-ceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 325 EFWSLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 325 ~~~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.+...++ +++++||++|.|++++++++.+.+.+.
T Consensus 128 ~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 128 EFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred HHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcc
Confidence 3455666 799999999999999999999988653
No 23
>PRK11058 GTPase HflX; Provisional
Probab=99.86 E-value=2.1e-20 Score=187.78 Aligned_cols=164 Identities=21% Similarity=0.220 Sum_probs=119.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc-eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.++|+++|.+|||||||+|+|++.... +.+.+++|.+.....+.+.+. .+.+|||||+.. ......++.|
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r--~lp~~lve~f------ 267 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIR--HLPHDLVAAF------ 267 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccc--cCCHHHHHHH------
Confidence 568999999999999999999998754 677888999888777776664 889999999954 2223333332
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHH-HHHHHHHh-CCCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN-YMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~-~~~~l~~~-~~~~p~ivV~NK~Dl~~~~ 319 (381)
..+...+..+|++++|+|++++....+.. +...+... ..++|+++|+||+|+.+..
T Consensus 268 ----------------------~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~ 325 (426)
T PRK11058 268 ----------------------KATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDF 325 (426)
T ss_pred ----------------------HHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCch
Confidence 24556778999999999999876555533 22333332 1379999999999997532
Q ss_pred cchhHHHhhCCCc-eEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 320 IMQVSEFWSLGFS-PLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 320 ~~~~~~~~~~~~~-~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.. .......+.+ ++++||++|+|+++|+++|.+.+...
T Consensus 326 ~~-~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 326 EP-RIDRDEENKPIRVWLSAQTGAGIPLLFQALTERLSGE 364 (426)
T ss_pred hH-HHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence 11 1111223445 48999999999999999999988643
No 24
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=1.6e-20 Score=164.00 Aligned_cols=163 Identities=32% Similarity=0.438 Sum_probs=120.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|.+|+|||||+|+|++.........++++.......+..++..+.+|||||+.+...... .++.+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~-~~e~~------- 73 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEE-GIEKY------- 73 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhc-cHHHH-------
Confidence 4589999999999999999999886555667777887776666677788899999999976432111 11111
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcc--c
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG--I 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~--~ 320 (381)
........+..+|++++|+|+.++.+.....++..+... +.|+++|+||+|+.+.. .
T Consensus 74 -------------------~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~ 132 (174)
T cd01895 74 -------------------SVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEE--GKALVIVVNKWDLVEKDSKT 132 (174)
T ss_pred -------------------HHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc--CCCEEEEEeccccCCccHHH
Confidence 112334566789999999999998887777777766655 89999999999997652 2
Q ss_pred chhH-HH--hh----CCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 321 MQVS-EF--WS----LGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 321 ~~~~-~~--~~----~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
.... .. .. ...+++++||++|+|++++++++.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 133 MKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred HHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 2111 11 11 13589999999999999999998764
No 25
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.86 E-value=1.1e-20 Score=165.64 Aligned_cols=159 Identities=24% Similarity=0.321 Sum_probs=113.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc-eEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
.|+++|.+|||||||+|+|.+... .++..+++|.....+.+..++. .+.+|||||+.+.......+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~------------ 68 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGL------------ 68 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCc------------
Confidence 589999999999999999998753 5677778887777766666676 89999999986432211111
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC-CChhH-HHHHHHHHHhC---CCCeEEEEEeCccCCCc
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-LTAAD-EEIADWLRKNY---MDKFIILAVNKCESPRK 318 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~-~~~~~-~~~~~~l~~~~---~~~p~ivV~NK~Dl~~~ 318 (381)
...+...+..+|++++|+|++++ ..... ..+.+.+.... .++|+++|+||+|+.+.
T Consensus 69 -------------------~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 69 -------------------GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred -------------------hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 12334456689999999999876 33333 34555554432 37899999999999765
Q ss_pred ccchh-H-HHhh--CCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 319 GIMQV-S-EFWS--LGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 319 ~~~~~-~-~~~~--~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
..... . .... .+.+++++||++|.|++++++++.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 130 EELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred hhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 43222 1 1222 256899999999999999999998753
No 26
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=1.5e-20 Score=177.51 Aligned_cols=205 Identities=26% Similarity=0.336 Sum_probs=155.3
Q ss_pred cchhHhhHHHHHHHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCC
Q 016883 108 IDVDALEREAKDAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 108 i~~sa~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
-....+..++.+++++..+++.+.+..+.++..++...-.. +...+++++.|+||||||||++++++.+
T Consensus 124 ~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~I-----------dp~~pTivVaG~PNVGKSSlv~~lT~Ak 192 (346)
T COG1084 124 KEANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAI-----------DPDLPTIVVAGYPNVGKSSLVRKLTTAK 192 (346)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCC-----------CCCCCeEEEecCCCCcHHHHHHHHhcCC
Confidence 34456666777777777777777777766666665442211 2357899999999999999999999987
Q ss_pred cccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHH
Q 016883 188 RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQAT 267 (381)
Q Consensus 188 ~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (381)
..+.++|+||...+.+.+..++.+++++||||+.+..-...+- +++++.
T Consensus 193 -pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~------------------------------IE~qAi 241 (346)
T COG1084 193 -PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNE------------------------------IERQAI 241 (346)
T ss_pred -CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcH------------------------------HHHHHH
Confidence 5899999999999999999999999999999998754433322 345666
Q ss_pred HHhcc-ccEEEEEEeCCC--CCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHH--hhCC-CceEEEecCC
Q 016883 268 AAIEE-SCVIIFLVDGQA--GLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF--WSLG-FSPLPISAIS 340 (381)
Q Consensus 268 ~~l~~-~d~ii~VvD~~~--~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~--~~~~-~~~~~vSA~~ 340 (381)
.++.. .++|+|++|++. +++-.. ..++..++..+. .|+++|+||+|....+..+.... ...+ .....+++..
T Consensus 242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceeeee
Confidence 66655 789999999876 555554 568888888775 99999999999987555444432 2223 3478899999
Q ss_pred CCCHHHHHHHHHHHh
Q 016883 341 GTGTGELLDLVCSEL 355 (381)
Q Consensus 341 g~gi~~l~~~i~~~l 355 (381)
+.+++.+.+.+....
T Consensus 321 ~~~~d~~~~~v~~~a 335 (346)
T COG1084 321 GCGLDKLREEVRKTA 335 (346)
T ss_pred hhhHHHHHHHHHHHh
Confidence 999999888877763
No 27
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.85 E-value=1.7e-20 Score=163.14 Aligned_cols=150 Identities=17% Similarity=0.238 Sum_probs=104.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccc--cCCCCcccccceeeEEeC-CceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIV--VDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~--~~~~~tt~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.|+++|.+|||||||+|+|++...... ...+++|.......+.+. +..+.+|||||+.++.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~---------------- 65 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFI---------------- 65 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHH----------------
Confidence 689999999999999999997532111 123455666555555555 6789999999985321
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
.....++..+|++++|+|++++...+..+.+..+... ...|+++|+||+|+......
T Consensus 66 ----------------------~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~ 122 (164)
T cd04171 66 ----------------------KNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWL 122 (164)
T ss_pred ----------------------HHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHH
Confidence 1334556789999999999876655555555544433 13499999999999764211
Q ss_pred -----hhHHHh-h---CCCceEEEecCCCCCHHHHHHHHHH
Q 016883 322 -----QVSEFW-S---LGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 322 -----~~~~~~-~---~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
+..... . .+.+++++||++|+|++++++++.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 123 ELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 111111 1 3568999999999999999998764
No 28
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=5e-20 Score=184.31 Aligned_cols=163 Identities=27% Similarity=0.351 Sum_probs=121.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC-CceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..|+++|.||||||||||+|++.. +.++++++||.......+.+. +..+.++||||+.........
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~g------------ 225 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVG------------ 225 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccch------------
Confidence 499999999999999999999876 467889999999988887776 678999999999764432221
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC---CChhH-HHHHHHHHHh---CCCCeEEEEEeCccC
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LTAAD-EEIADWLRKN---YMDKFIILAVNKCES 315 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~---~~~~~-~~~~~~l~~~---~~~~p~ivV~NK~Dl 315 (381)
+...++.++..++++++|+|+++. ....+ ..+...+... +.++|+++|+||+|+
T Consensus 226 -------------------Lg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 226 -------------------LGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred -------------------HHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 123456677889999999999753 12222 3455555543 347999999999998
Q ss_pred CCcccchhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 316 PRKGIMQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 316 ~~~~~~~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
..... ....+ ...+.+++++||++|+|+++|+++|.+.+.+..
T Consensus 287 ~~~~e-~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 287 PEAEE-NLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred cCCHH-HHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 43221 11111 223468999999999999999999999887654
No 29
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=4.6e-20 Score=186.78 Aligned_cols=160 Identities=57% Similarity=0.883 Sum_probs=128.9
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
++|+++|.+|||||||+|+|.+...+.+...+++|++.....+.+++..+.+|||||+.+... ...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~---~~~----------- 67 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD---GFE----------- 67 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch---hHH-----------
Confidence 489999999999999999999988777888999999988888888889999999999975211 111
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~ 323 (381)
..+...+..++..+|++++|+|+.++.+..+.++...+++. ++|+++|+||+|..... ...
T Consensus 68 ----------------~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~D~~~~~-~~~ 128 (435)
T PRK00093 68 ----------------KQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKS--NKPVILVVNKVDGPDEE-ADA 128 (435)
T ss_pred ----------------HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCcEEEEEECccCccch-hhH
Confidence 11234566678899999999999998888888888888876 89999999999975422 222
Q ss_pred HHHhhCCC-ceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 324 ~~~~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
..+...++ .++++||++|.|++++++++.+...
T Consensus 129 ~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~ 162 (435)
T PRK00093 129 YEFYSLGLGEPYPISAEHGRGIGDLLDAILEELP 162 (435)
T ss_pred HHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCC
Confidence 33445566 4899999999999999999988443
No 30
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.85 E-value=1.9e-20 Score=163.88 Aligned_cols=155 Identities=15% Similarity=0.099 Sum_probs=107.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|||||||++++........ ..+.............++ ..+.+|||||...+..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------------- 64 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQ-QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT---------------- 64 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh----------------
Confidence 789999999999999999987653211 111111111111223333 3577999999865332
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
....++..+|++++|+|++++.+..+ ..|+..+++...+.|+++|+||+|+......
T Consensus 65 ----------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~ 122 (161)
T cd04124 65 ----------------------MHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQ 122 (161)
T ss_pred ----------------------hhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHH
Confidence 23356789999999999987655544 4577777665568999999999998543222
Q ss_pred hhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 322 QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 322 ~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
+...+ ...+.+++++||++|.|++++++.+.+.+.++
T Consensus 123 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 123 KKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 22222 23467899999999999999999999877654
No 31
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.85 E-value=4.4e-20 Score=179.94 Aligned_cols=161 Identities=27% Similarity=0.343 Sum_probs=120.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC-ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
...|+++|.+|||||||+|+|.... ..++++++||...+...+.+.+ ..+.+|||||+.+.......
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~g----------- 224 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAG----------- 224 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccccc-----------
Confidence 4689999999999999999999875 4688899999999888887776 78999999999765433221
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC---CChhH-HHHHHHHHHh---CCCCeEEEEEeCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LTAAD-EEIADWLRKN---YMDKFIILAVNKCE 314 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~---~~~~~-~~~~~~l~~~---~~~~p~ivV~NK~D 314 (381)
+...+++++..+|++++|+|+++. ....+ ..+...+... +.++|+++|+||+|
T Consensus 225 --------------------Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D 284 (329)
T TIGR02729 225 --------------------LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID 284 (329)
T ss_pred --------------------HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence 123556677899999999999864 12222 2344444432 34799999999999
Q ss_pred CCCcccchhH-H-H-hhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 315 SPRKGIMQVS-E-F-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 315 l~~~~~~~~~-~-~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
+......+.. + + ...+.+++++||++++|+++++++|.+.+
T Consensus 285 L~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 285 LLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 9765332221 1 1 13457899999999999999999998865
No 32
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.84 E-value=4.1e-20 Score=161.62 Aligned_cols=153 Identities=20% Similarity=0.276 Sum_probs=110.0
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC---CceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
+.|+++|.+|+|||||+|+|.+.... ....+++|.+.....+... +..+.+|||||+.....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~-------------- 65 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN-------------- 65 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHH--------------
Confidence 36899999999999999999987643 2233455555544444443 66789999999854211
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
.....+..+|++++|+|++++......+.+..+... ++|+++|+||+|+.....
T Consensus 66 ------------------------~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~--~~p~ivv~NK~Dl~~~~~ 119 (168)
T cd01887 66 ------------------------MRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAA--NVPFIVALNKIDKPNANP 119 (168)
T ss_pred ------------------------HHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEEEEEEceecccccH
Confidence 222345789999999999987766666666666654 899999999999875321
Q ss_pred c---hhHH-H-------hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 321 M---QVSE-F-------WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 321 ~---~~~~-~-------~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
. .... . .....+++++||++|+|+++++++|.+..++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (168)
T cd01887 120 ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAEK 167 (168)
T ss_pred HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhhc
Confidence 1 1111 1 1123589999999999999999999887653
No 33
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.84 E-value=8.5e-20 Score=184.39 Aligned_cols=160 Identities=31% Similarity=0.386 Sum_probs=122.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|.+|||||||+|+|++...+.++..+++|++.....+.+++..+.+|||||+.+... .++..++
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~----~ie~~gi----- 273 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD----FVERLGI----- 273 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh----HHHHHHH-----
Confidence 5699999999999999999999987778889999999988888888898999999999975322 1222211
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
..+..++..+|++++|+|++++.+..+. ++..+... ++|+++|+||+|+..... +
T Consensus 274 ---------------------~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~--~~piIlV~NK~Dl~~~~~-~ 328 (442)
T TIGR00450 274 ---------------------EKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKS--KKPFILVLNKIDLKINSL-E 328 (442)
T ss_pred ---------------------HHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhC--CCCEEEEEECccCCCcch-h
Confidence 2455678899999999999987766555 55555443 789999999999965421 1
Q ss_pred hHHHhhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 323 ~~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.. ....+.+++.+||++ .|++++++.+.+.+.+.
T Consensus 329 ~~-~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 329 FF-VSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred hh-hhhcCCceEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 11 123456889999998 58888888888877654
No 34
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=5e-20 Score=196.75 Aligned_cols=164 Identities=46% Similarity=0.730 Sum_probs=132.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
...++|+++|.+|||||||+|+|++...+.++..+++|++.......+++..+.+|||||+.....
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~-------------- 338 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE-------------- 338 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc--------------
Confidence 345789999999999999999999987778888999999888877778888999999999864211
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
.+...+..++..++..+|++++|+|+.++++..+.++...++.. ++|+++|+||+|+.....
T Consensus 339 ----------------~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~~ 400 (712)
T PRK09518 339 ----------------GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA--GKPVVLAVNKIDDQASEY 400 (712)
T ss_pred ----------------cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEECcccccchh
Confidence 11122335666788999999999999998888888888888876 999999999999865322
Q ss_pred chhHHHhhCCC-ceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 321 MQVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 321 ~~~~~~~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
....++..+. .++++||++|.|+++|+++|.+.+.+
T Consensus 401 -~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 401 -DAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred -hHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 2223333443 46899999999999999999998865
No 35
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.84 E-value=7.3e-20 Score=159.41 Aligned_cols=152 Identities=15% Similarity=0.120 Sum_probs=106.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|+|||||++++.+... .....+++.........+++. .+.+|||||..+...
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 65 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA--------------- 65 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhH---------------
Confidence 5899999999999999999997653 344444444333333445553 477999999865322
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|+++..+... ..+...+.+. ..+.|+++|+||+|+...
T Consensus 66 -----------------------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 66 -----------------------MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred -----------------------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 23355678999999999987544333 3344444432 247899999999999764
Q ss_pred ccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.... ...+ ...+.+++++||++|.|++++++++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 123 RKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 3211 1111 23567999999999999999999998765
No 36
>COG2262 HflX GTPases [General function prediction only]
Probab=99.84 E-value=9.7e-20 Score=176.72 Aligned_cols=170 Identities=26% Similarity=0.303 Sum_probs=131.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC-CceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
.+.+.|.++|.+|+|||||+|+|++... .+.+..+.|.+++...+.+. |..+.+.||-||.+ +.++.++++|
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AF---- 262 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAF---- 262 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHH----
Confidence 4578999999999999999999998763 55677788988888887776 57899999999986 6777778877
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHH-HHHHHh-CCCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA-DWLRKN-YMDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~-~~l~~~-~~~~p~ivV~NK~Dl~~ 317 (381)
+.++.....+|++++|+|++++......+.. +.+.+. ...+|+|+|+||+|+..
T Consensus 263 ------------------------ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 263 ------------------------KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLE 318 (411)
T ss_pred ------------------------HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccC
Confidence 4778888999999999999998555554433 344442 24789999999999887
Q ss_pred ccc-chhHHHhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcccccc
Q 016883 318 KGI-MQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEVCIG 363 (381)
Q Consensus 318 ~~~-~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~~~~ 363 (381)
+.. ...... ... ..+++||++|+|++.|++.|.+.+........
T Consensus 319 ~~~~~~~~~~-~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~ 363 (411)
T COG2262 319 DEEILAELER-GSP-NPVFISAKTGEGLDLLRERIIELLSGLRTEVT 363 (411)
T ss_pred chhhhhhhhh-cCC-CeEEEEeccCcCHHHHHHHHHHHhhhcccceE
Confidence 654 111111 111 58999999999999999999999885543333
No 37
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.84 E-value=4.9e-20 Score=161.14 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=107.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||+++++.... ...+.+++.......+..++. .+.+|||||......
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA--------------- 64 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchh---------------
Confidence 4899999999999999999997642 334444554443334555544 456999999865433
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|.++..+..+ .+++..+.+. ..+.|+++|+||+|+...
T Consensus 65 -----------------------~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 65 -----------------------MRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred -----------------------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 22346678999999999886544433 3455555432 247999999999999764
Q ss_pred ccchh---HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 319 GIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~~~~~---~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
..... ..+ ...+.+++++||++|.|+++++.++.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 122 RVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred cEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 32211 111 345679999999999999999999988664
No 38
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.84 E-value=6.7e-20 Score=158.51 Aligned_cols=152 Identities=29% Similarity=0.386 Sum_probs=111.9
Q ss_pred EEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCc
Q 016883 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIP 247 (381)
Q Consensus 168 l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (381)
++|.+|||||||+|++++.. ..++..+++|.+.....+.+++..+.+|||||+.+......+
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~----------------- 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSED----------------- 62 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChh-----------------
Confidence 57999999999999999876 466778888988887778888888999999999765432210
Q ss_pred hhhHHHHHhcchhHHHHHHHHHh--ccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch--h
Q 016883 248 LATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ--V 323 (381)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l--~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~--~ 323 (381)
. .....++ ..+|++++|+|+.+.. ....+...+.+. ++|+++|+||+|+.+..... .
T Consensus 63 ------------~---~~~~~~~~~~~~d~vi~v~d~~~~~--~~~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~ 123 (158)
T cd01879 63 ------------E---KVARDFLLGEKPDLIVNVVDATNLE--RNLYLTLQLLEL--GLPVVVALNMIDEAEKRGIKIDL 123 (158)
T ss_pred ------------H---HHHHHHhcCCCCcEEEEEeeCCcch--hHHHHHHHHHHc--CCCEEEEEehhhhcccccchhhH
Confidence 0 0112233 4899999999998632 233445555554 89999999999997643211 1
Q ss_pred HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 324 SEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 324 ~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
... ...+.+++++||++|+|++++++++.+.++
T Consensus 124 ~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~~ 157 (158)
T cd01879 124 DKLSELLGVPVVPTSARKGEGIDELKDAIAELAE 157 (158)
T ss_pred HHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHhc
Confidence 111 234679999999999999999999988643
No 39
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.84 E-value=8e-20 Score=158.31 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=104.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||+|++.+... .....+++.......+..++. .+.+|||||......
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 64 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA--------------- 64 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHH---------------
Confidence 4899999999999999999998753 233333433333333444554 367899999864322
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|.++..+..+ ..+...+.+. ..+.|+++|+||+|+...
T Consensus 65 -----------------------l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 65 -----------------------MRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred -----------------------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 23356778999999999987443333 2344444432 247899999999999764
Q ss_pred ccch--hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 319 GIMQ--VSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 319 ~~~~--~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.... .... ...+.+++++||++|.|++++++++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 122 TVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred eecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 3221 1111 23567899999999999999999998754
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.84 E-value=5.8e-20 Score=159.88 Aligned_cols=152 Identities=17% Similarity=0.194 Sum_probs=106.0
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
++|+++|.+|||||||++++..... ...+.+|+.......+..++. .+.+|||||..++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA--------------- 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccch---------------
Confidence 4899999999999999999997753 233444444333334455554 456899999875433
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|.++..+..+ ..++..+.+. ..+.|+++|+||+|+...
T Consensus 65 -----------------------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 65 -----------------------MRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE 121 (163)
T ss_pred -----------------------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 22245678999999999987544433 3455555542 247899999999998653
Q ss_pred ccchh---HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 319 GIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 319 ~~~~~---~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
..... ..+ ...+.+++++||++|.|++++++++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 122 RVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 32211 111 23457899999999999999999998754
No 41
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=6e-20 Score=186.12 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=122.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
...|+|+|.||||||||+|+|++.. ..++++++||.....+.+.+.+..++++||||+........ .
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~----g-------- 225 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGK----G-------- 225 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhh----H--------
Confidence 4689999999999999999999876 46789999999999988888888999999999975433211 1
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC----ChhHH-HHHHHHHH------------hCCCCe
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL----TAADE-EIADWLRK------------NYMDKF 305 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~----~~~~~-~~~~~l~~------------~~~~~p 305 (381)
+...++.++..||++++|+|++... ...+. .+...+.. .+.++|
T Consensus 226 -------------------Lg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP 286 (500)
T PRK12296 226 -------------------LGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERP 286 (500)
T ss_pred -------------------HHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCC
Confidence 1224556788999999999997421 11121 22223322 134799
Q ss_pred EEEEEeCccCCCcccch-hH--HHhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 306 IILAVNKCESPRKGIMQ-VS--EFWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 306 ~ivV~NK~Dl~~~~~~~-~~--~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+++|+||+|+.+..... .. .+...+++++++||++++|+++|+.+|.+.+....
T Consensus 287 ~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 287 RLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred EEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999997543221 11 12234679999999999999999999999887654
No 42
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.84 E-value=1.4e-19 Score=156.60 Aligned_cols=161 Identities=34% Similarity=0.438 Sum_probs=117.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|.+|+|||||+|++.+...+.....+.++...........+..+.+|||||+........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~------------- 69 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG------------- 69 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH-------------
Confidence 3489999999999999999999987666666666666655555555567789999999875432111
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCC-cccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR-KGIM 321 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~-~~~~ 321 (381)
..+.......+..+|++++|+|+.++....+..+...+... +.|+++|+||+|+.. ....
T Consensus 70 -----------------~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~ 130 (168)
T cd04163 70 -----------------ERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKS--KTPVILVLNKIDLVKDKEDL 130 (168)
T ss_pred -----------------HHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHh--CCCEEEEEEchhccccHHHH
Confidence 01223344567889999999999988666667777777665 799999999999974 2222
Q ss_pred h-hHHH-hh-C-CCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 322 Q-VSEF-WS-L-GFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 322 ~-~~~~-~~-~-~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
. .... .. . ..+++++|++++.|+++++++|.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 131 LPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred HHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 2 1111 11 2 35889999999999999999997753
No 43
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.84 E-value=6.9e-20 Score=161.38 Aligned_cols=154 Identities=16% Similarity=0.081 Sum_probs=106.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccc--eeeEEeC--CceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRM--YGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~--~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
++|+++|.+|||||||+++++..... .... .|.... ...+..+ ...+.+|||||..+.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------- 66 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE--KKYV-ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR----------- 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCC-CceeeEEEEEEEEECCEEEEEEEEECCCChhhcccc-----------
Confidence 37899999999999999999865421 1111 222111 1112222 2457899999987543321
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
..++..+|++|+|+|.+++.+... ..++..+.+...+.|+++|+||+|+...
T Consensus 67 ---------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~ 119 (166)
T cd00877 67 ---------------------------DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDR 119 (166)
T ss_pred ---------------------------HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccc
Confidence 135578999999999997655544 3466677665558999999999999744
Q ss_pred ccch-hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 GIMQ-VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~~~~-~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.... ...+ ...+.+++++||++|+|+++++++|.+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 161 (166)
T cd00877 120 KVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGN 161 (166)
T ss_pred cCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHhc
Confidence 3222 2222 23456899999999999999999999887653
No 44
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.84 E-value=1.3e-19 Score=158.06 Aligned_cols=153 Identities=19% Similarity=0.197 Sum_probs=105.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|||||||+|++.+.... ....+++.+.....+..++. .+.+|||||..+...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---------------- 63 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA---------------- 63 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH----------------
Confidence 7899999999999999999987532 23333444333333444443 567999999865322
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|++++.+... ..+...+.+.. .+.|+++|+||+|+....
T Consensus 64 ----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~ 121 (164)
T smart00173 64 ----------------------MRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER 121 (164)
T ss_pred ----------------------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence 22345678999999999987544333 23334443321 368999999999997643
Q ss_pred cchh---HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 320 IMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 320 ~~~~---~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.... .. ....+.+++++||++|.|+++++++|.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 163 (164)
T smart00173 122 VVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIRK 163 (164)
T ss_pred eEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHhh
Confidence 2111 11 13356789999999999999999999987653
No 45
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=1.7e-20 Score=168.71 Aligned_cols=154 Identities=27% Similarity=0.383 Sum_probs=115.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCccc-----------------ccCCCCcccccceeeEE--eCCceEEEEEcCCCCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-----------------VVDEPGVTRDRMYGRSF--WGEHEFMLVDTGGVLN 223 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~-----------------~~~~~~tt~~~~~~~~~--~~~~~~~liDTPG~~~ 223 (381)
..+|+++|+.++|||||+++|++..... .....+.|.......+. ..+..+.++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 3489999999999999999998653110 00113455555555666 7788999999999864
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+. ..+...+..+|++++|+|+.++...+..+.+..+... +
T Consensus 83 f~--------------------------------------~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~--~ 122 (188)
T PF00009_consen 83 FI--------------------------------------KEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL--G 122 (188)
T ss_dssp HH--------------------------------------HHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT--T
T ss_pred ee--------------------------------------ecccceecccccceeeeeccccccccccccccccccc--c
Confidence 22 2455667899999999999999999999999999887 9
Q ss_pred CeEEEEEeCccCCCcccchhH---H--H-h--h----CCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 304 KFIILAVNKCESPRKGIMQVS---E--F-W--S----LGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~~~~~~~~---~--~-~--~----~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
+|+++|+||+|+...+..+.. . + . . ...|++++||++|.|+++|++.|.++++
T Consensus 123 ~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 123 IPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp -SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 999999999999843222211 1 1 0 1 1358999999999999999999999875
No 46
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.84 E-value=6.2e-20 Score=160.68 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=102.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcc---cccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRA---IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~---~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
+|+++|++|+|||||+|+|.+.... .......+|.......+.+++..+.+|||||+.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------------- 65 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRS--------------- 65 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHH---------------
Confidence 4789999999999999999865321 1112223455555556677788899999999864321
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|+.+..+... ..++..+.+. ..+.|+++|+||+|+...
T Consensus 66 -----------------------~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 66 -----------------------LWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred -----------------------HHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 33456789999999999986432222 2233333221 247999999999998664
Q ss_pred ccchhHH-Hh--------hCCCceEEEecCCCCCHHHHHHHHHH
Q 016883 319 GIMQVSE-FW--------SLGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 319 ~~~~~~~-~~--------~~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
....... .. ..+.+++++||++|+|++++++||.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 123 LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 3222211 11 12457999999999999999999865
No 47
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.83 E-value=1.2e-19 Score=157.76 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=107.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|||||||+|++.+.... ....+.++.+.....+..++. .+.+|||||.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----------------- 63 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR----------------- 63 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH-----------------
Confidence 7899999999999999999988642 344455555555555555553 47899999975421
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~~ 320 (381)
.....++..+|++++|+|.+++.+..+ ..++..+.... .+.|+++|+||+|+.....
T Consensus 64 ---------------------~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~ 122 (161)
T cd01861 64 ---------------------SLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ 122 (161)
T ss_pred ---------------------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCc
Confidence 123345688999999999987544433 34555554432 2599999999999954322
Q ss_pred chh---HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 321 MQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 321 ~~~---~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
... .. ....+.+++++||++|.|++++++++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 123 VSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred cCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 111 11 134567899999999999999999998753
No 48
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.83 E-value=1.3e-19 Score=158.70 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=106.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||++++.+.... ....+..+.+.....+..++. .+.+|||||......
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------------- 66 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT--------------- 66 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHH---------------
Confidence 58999999999999999999987532 222232233333333444443 578999999754221
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|+++..+... .+++..+.+.. .+.|+++|+||+|+....
T Consensus 67 -----------------------~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~ 123 (166)
T cd01869 67 -----------------------ITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKR 123 (166)
T ss_pred -----------------------HHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccccc
Confidence 23356688999999999987543333 34555555433 468999999999986543
Q ss_pred cchh---HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 320 IMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 320 ~~~~---~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.... .. ....+.+++++||++|.|+++++++|.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 124 VVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 2211 11 1245679999999999999999999988764
No 49
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.4e-19 Score=180.01 Aligned_cols=165 Identities=22% Similarity=0.231 Sum_probs=121.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC-ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
...|+|+|.||||||||+|+|++.+ ..++++|+||+....+.+...+ ..+.++||||+.........
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~----------- 226 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAG----------- 226 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhh-----------
Confidence 3489999999999999999999876 4889999999999999887765 45999999999764332211
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC---C-CChhHHHHHHHHHHh---CCCCeEEEEEeCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA---G-LTAADEEIADWLRKN---YMDKFIILAVNKCE 314 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~---~-~~~~~~~~~~~l~~~---~~~~p~ivV~NK~D 314 (381)
+...++.++..+|++++|+|++. . .......++..+... +.++|+++|+||+|
T Consensus 227 --------------------Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiD 286 (390)
T PRK12298 227 --------------------LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKID 286 (390)
T ss_pred --------------------HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCc
Confidence 12245567889999999999872 1 112224455555543 24799999999999
Q ss_pred CCCcccc-hhHH-H-hhCC--CceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 315 SPRKGIM-QVSE-F-WSLG--FSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 315 l~~~~~~-~~~~-~-~~~~--~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+...... +... + ...+ .+++++||+++.|+++|+++|.+.+.+..
T Consensus 287 l~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 287 LLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred cCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCc
Confidence 9764322 1111 1 1122 37899999999999999999999987543
No 50
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=5.3e-20 Score=165.68 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=107.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|||||||++++..... ...+.+++.......+..++. .+.+|||||..+...
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------------- 62 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA---------------- 62 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH----------------
Confidence 478999999999999999997653 233343443332333444554 377999999864322
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh----CCCCeEEEEEeCccCCC
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN----YMDKFIILAVNKCESPR 317 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~----~~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|.++..+... ..++..+... ..+.|+++|+||+|+..
T Consensus 63 ----------------------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 63 ----------------------LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred ----------------------HHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 22356788999999999987554443 3455555442 14689999999999965
Q ss_pred cccchh---HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 318 KGIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 318 ~~~~~~---~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
...... ..+ ...+.+++++||++|.|++++++++.+.+.+...
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~ 167 (190)
T cd04144 121 EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQ 167 (190)
T ss_pred cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 322111 111 2356789999999999999999999987765443
No 51
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.83 E-value=1.4e-19 Score=161.35 Aligned_cols=162 Identities=25% Similarity=0.307 Sum_probs=110.6
Q ss_pred ccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCC-cccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhh
Q 016883 154 TIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIM 232 (381)
Q Consensus 154 ~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~ 232 (381)
.+.+.+..+.++|+++|.+|+|||||+|++++.. ...++..+++|.+...... + ..+.+|||||+......... .
T Consensus 9 ~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~-~ 84 (179)
T TIGR03598 9 KLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEE-K 84 (179)
T ss_pred cHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhH-H
Confidence 3456667778899999999999999999999875 4566777777776654333 2 46899999998653221110 0
Q ss_pred hhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeC
Q 016883 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNK 312 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK 312 (381)
++ +...+ .........+|++++|+|++++++..+.+++..+... ++|+++|+||
T Consensus 85 ~~-----------------------~~~~~-~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~--~~pviiv~nK 138 (179)
T TIGR03598 85 EK-----------------------WQKLI-EEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER--GIPVLIVLTK 138 (179)
T ss_pred HH-----------------------HHHHH-HHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEEC
Confidence 00 10001 1111222357899999999988888888877777765 8999999999
Q ss_pred ccCCCcccch----hH-HHh-h--CCCceEEEecCCCCCHH
Q 016883 313 CESPRKGIMQ----VS-EFW-S--LGFSPLPISAISGTGTG 345 (381)
Q Consensus 313 ~Dl~~~~~~~----~~-~~~-~--~~~~~~~vSA~~g~gi~ 345 (381)
+|+......+ .. ... . .+.+++++||++|+|++
T Consensus 139 ~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 139 ADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 9997643211 11 111 1 23489999999999974
No 52
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.83 E-value=5.6e-20 Score=161.83 Aligned_cols=155 Identities=25% Similarity=0.269 Sum_probs=110.9
Q ss_pred EEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC-CceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCC
Q 016883 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (381)
Q Consensus 168 l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
++|++|||||||+|+|.+... .++..+++|.......+.++ +..+.+|||||+.+.......+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~--------------- 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL--------------- 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc---------------
Confidence 579999999999999999864 56777888888877777777 8899999999986432211110
Q ss_pred chhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC------ChhH-HHHHHHHHHh--------CCCCeEEEEEe
Q 016883 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL------TAAD-EEIADWLRKN--------YMDKFIILAVN 311 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~------~~~~-~~~~~~l~~~--------~~~~p~ivV~N 311 (381)
.......+..+|++++|+|+.+.. ...+ ..+...+... ..++|+++|+|
T Consensus 65 ----------------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~N 128 (176)
T cd01881 65 ----------------GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLN 128 (176)
T ss_pred ----------------cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEE
Confidence 113345567899999999998763 2222 2233333321 13799999999
Q ss_pred CccCCCcccchhH----HHhhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 312 KCESPRKGIMQVS----EFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 312 K~Dl~~~~~~~~~----~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
|+|+......... .....+.+++++||++|.|++++++++.+.
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 129 KIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred chhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 9999765443332 222345689999999999999999998765
No 53
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.83 E-value=1.6e-19 Score=157.49 Aligned_cols=152 Identities=20% Similarity=0.145 Sum_probs=105.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
++|+++|.+|||||||++++...... .....+........+..++. .+.+|||||...+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASM-------------- 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccccch--------------
Confidence 48999999999999999999987532 22333333333334444554 4678999998765432
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~~ 318 (381)
...++..+|++++|+|.++..+..+ ..++..+.+.. .++|+++|+||+|+...
T Consensus 66 ------------------------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 66 ------------------------RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred ------------------------HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 2245678999999999987554433 34555555432 47999999999998653
Q ss_pred ccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.... ...+ ...+.+++++||++|.|++++++++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 122 REVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 3211 1111 23467899999999999999999998765
No 54
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=9.1e-20 Score=161.56 Aligned_cols=152 Identities=24% Similarity=0.309 Sum_probs=102.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCccc-----c---------cCCCCcccccceeeEEe-----CCceEEEEEcCCCCCcc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAI-----V---------VDEPGVTRDRMYGRSFW-----GEHEFMLVDTGGVLNVS 225 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~-----~---------~~~~~tt~~~~~~~~~~-----~~~~~~liDTPG~~~~~ 225 (381)
+|+++|++|||||||+++|++..... . ....++|.......+.+ .+..+.+|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742110 0 01122333332222222 34457899999997532
Q ss_pred CCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe
Q 016883 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p 305 (381)
. .+..++..+|++++|+|++++.+..+...+..+... ++|
T Consensus 82 ~--------------------------------------~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~--~~~ 121 (179)
T cd01890 82 Y--------------------------------------EVSRSLAACEGALLLVDATQGVEAQTLANFYLALEN--NLE 121 (179)
T ss_pred H--------------------------------------HHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHc--CCC
Confidence 2 334567789999999999987766665544444443 789
Q ss_pred EEEEEeCccCCCcccchhH-HH-hhCCC---ceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 306 IILAVNKCESPRKGIMQVS-EF-WSLGF---SPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 306 ~ivV~NK~Dl~~~~~~~~~-~~-~~~~~---~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
+++|+||+|+.+....... .+ ...+. +++++||++|+|+++++++|.+.++
T Consensus 122 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 122 IIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 9999999998653221111 11 12233 4899999999999999999988764
No 55
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.83 E-value=1.9e-19 Score=164.00 Aligned_cols=154 Identities=19% Similarity=0.145 Sum_probs=109.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCc-ccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGV-TRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~t-t~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.|+++|.+|||||||++++....+. ..+..| +.+.....+.+++ ..+.+|||+|...+..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~--~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~--------------- 64 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC--EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS--------------- 64 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC--CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH---------------
Confidence 6899999999999999999987532 222222 2233333455555 4578999999875432
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~~ 319 (381)
....+++.+|++|+|+|+++..+..+ ..|+..+.+. ..+.|+++|+||+|+....
T Consensus 65 -----------------------l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~ 121 (202)
T cd04120 65 -----------------------ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121 (202)
T ss_pred -----------------------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 33467889999999999998665555 3466666553 2479999999999996533
Q ss_pred cchh---HHHh-h-CCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 320 IMQV---SEFW-S-LGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 320 ~~~~---~~~~-~-~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.... ..+. . .++.++++||++|.||+++|+++.+.+.+.
T Consensus 122 ~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 122 EISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 165 (202)
T ss_pred ccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 2211 1111 2 357899999999999999999999877543
No 56
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.83 E-value=5.6e-20 Score=171.34 Aligned_cols=170 Identities=24% Similarity=0.344 Sum_probs=131.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
...|+++|.||||||||.|.+++.+++.++...+||++...+.+.-+..+++|+||||+.........
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~------------ 139 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRH------------ 139 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhH------------
Confidence 45899999999999999999999999999999999999999999988999999999999864432211
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcc---
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG--- 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~--- 319 (381)
++...+.+..+.++..||++++|+|+++.-......++..+++. ..+|-|+|+||+|.....
T Consensus 140 --------------~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~L 204 (379)
T KOG1423|consen 140 --------------HLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLL 204 (379)
T ss_pred --------------HHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHH
Confidence 11111234567788999999999999976666667788888775 489999999999976431
Q ss_pred ----------cch-----hHHHh-h----------CCC----ceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 320 ----------IMQ-----VSEFW-S----------LGF----SPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 320 ----------~~~-----~~~~~-~----------~~~----~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
... ..+.+ . -++ .+|.+||++|+||+++.++|....++.+
T Consensus 205 l~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 205 LNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred hhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 111 11100 0 022 4899999999999999999999887544
No 57
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.83 E-value=6e-19 Score=160.24 Aligned_cols=163 Identities=15% Similarity=0.098 Sum_probs=107.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|||||||++++.+...... ..|.++.......+.+++. .+.+|||||...+..... ++
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~---~e-------- 69 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAG---QE-------- 69 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCCccch---hH--------
Confidence 789999999999999999998764221 2232222333233445553 567999999865322110 00
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh----CCCCeEEEEEeCccCCC
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN----YMDKFIILAVNKCESPR 317 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~----~~~~p~ivV~NK~Dl~~ 317 (381)
........+..+|++++|+|++++.+... ..+...+.+. ..++|+++|+||+|+..
T Consensus 70 -------------------~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 70 -------------------WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred -------------------HHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 00123345688999999999997655544 3344544443 24789999999999965
Q ss_pred cccchh--HH-H--hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 318 KGIMQV--SE-F--WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 318 ~~~~~~--~~-~--~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
...... .. + ...+.+++++||++|.|++++|+.+.+.+...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 131 HRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred cccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhcc
Confidence 432211 11 1 23467899999999999999999988765543
No 58
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.83 E-value=1.1e-19 Score=160.48 Aligned_cols=149 Identities=20% Similarity=0.220 Sum_probs=100.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|.+|||||||++++...... ...| |.......+...+..+.+|||||......
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~--t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~---------------- 68 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIP--TVGFNVETVTYKNVKFNVWDVGGQDKIRP---------------- 68 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccC--CcccceEEEEECCEEEEEEECCCCHHHHH----------------
Confidence 469999999999999999999876532 2222 22222233445667899999999864221
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHH-hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|+++..+..+ .++.+.+.. ...++|+++|+||+|+....
T Consensus 69 ----------------------~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 126 (168)
T cd04149 69 ----------------------LWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM 126 (168)
T ss_pred ----------------------HHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC
Confidence 23456789999999999987533322 233333332 23478999999999986532
Q ss_pred cchhH-HHh------hCCCceEEEecCCCCCHHHHHHHHHH
Q 016883 320 IMQVS-EFW------SLGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 320 ~~~~~-~~~------~~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
..+.. ... ...++++++||++|+|++++++||.+
T Consensus 127 ~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 127 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred CHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 21111 111 12346799999999999999999864
No 59
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.83 E-value=1.5e-19 Score=160.01 Aligned_cols=149 Identities=20% Similarity=0.236 Sum_probs=101.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|++|||||||++++.+........ |.......+.+++..+.+|||||.....
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~l~l~D~~G~~~~~----------------- 72 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISP----TLGFQIKTLEYEGYKLNIWDVGGQKTLR----------------- 72 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCC----ccccceEEEEECCEEEEEEECCCCHHHH-----------------
Confidence 4689999999999999999999875322221 2222233445567788999999986422
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHH--hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK--NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~--~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.....++..+|++++|+|++++.+..+ ..++..+.. ...+.|+++|+||+|+....
T Consensus 73 ---------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 131 (173)
T cd04154 73 ---------------------PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL 131 (173)
T ss_pred ---------------------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC
Confidence 123456789999999999987533322 223333322 22589999999999997643
Q ss_pred cchhH-HHh------hCCCceEEEecCCCCCHHHHHHHHHH
Q 016883 320 IMQVS-EFW------SLGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 320 ~~~~~-~~~------~~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
..+.. ... ..+++++++||++|.|++++++++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 132 SEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 22221 111 23458999999999999999999864
No 60
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=1.4e-19 Score=162.98 Aligned_cols=155 Identities=18% Similarity=0.174 Sum_probs=106.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcc-cccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt-~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
+|+++|.+|||||||++++...... ......++ .......+.+++ ..+.||||||......
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 65 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFL-NGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS--------------- 65 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-ccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHH---------------
Confidence 7899999999999999999987642 22222222 222222234444 3578999999754221
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|+++..+..+ ..++..+.+.. .+.|+++|+||+|+....
T Consensus 66 -----------------------~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 66 -----------------------VTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER 122 (191)
T ss_pred -----------------------hhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence 23356678999999999987544433 34566665543 378999999999996432
Q ss_pred cch--h-HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 320 IMQ--V-SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 320 ~~~--~-~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
... . ... ...+.+++++||++|.|+++++++|.+.+.+.
T Consensus 123 ~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 123 VVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 211 1 111 23567899999999999999999999887755
No 61
>PRK04213 GTP-binding protein; Provisional
Probab=99.83 E-value=4.6e-19 Score=160.56 Aligned_cols=167 Identities=31% Similarity=0.417 Sum_probs=107.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
..++|+++|.+|||||||+|+|.+.. ..++..+++|...... .+. .+.+|||||+...........+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~------- 75 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEK------- 75 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHH-------
Confidence 35699999999999999999999876 3566677777765432 222 68999999985433222111111
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC-----------ChhHHHHHHHHHHhCCCCeEEEEE
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-----------TAADEEIADWLRKNYMDKFIILAV 310 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~-----------~~~~~~~~~~l~~~~~~~p~ivV~ 310 (381)
+...+.......+..++++++|+|++... ...+.++...+... ++|+++|+
T Consensus 76 ----------------~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~ 137 (201)
T PRK04213 76 ----------------IKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAV 137 (201)
T ss_pred ----------------HHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEE
Confidence 11111111122345678999999986421 12334555555554 89999999
Q ss_pred eCccCCCcc--cchhH-HHhhC-------CCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 311 NKCESPRKG--IMQVS-EFWSL-------GFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 311 NK~Dl~~~~--~~~~~-~~~~~-------~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
||+|+.... ..+.. ..... +.+++++||++| |+++++++|.+.+.+..
T Consensus 138 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 138 NKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK 195 (201)
T ss_pred ECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence 999997543 11111 11111 125899999999 99999999999876543
No 62
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.83 E-value=2.1e-19 Score=159.30 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=108.1
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||++++...... ..+..+........+..++. .+.+|||||..++..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 65 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA--------------- 65 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHH---------------
Confidence 48999999999999999999977542 22222332222223445553 477999999865432
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|++++.+... .+|...+.+. ..+.|+++|+||+|+...
T Consensus 66 -----------------------l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 66 -----------------------MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred -----------------------HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc
Confidence 22345678999999999998766665 3355555442 247999999999998654
Q ss_pred ccchh---HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 GIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~~~~---~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
..... ..+ ...+.+++++||++|.||+++|+++.+.+.+
T Consensus 123 ~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 123 RQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred CccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 32221 111 2457899999999999999999999987664
No 63
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.83 E-value=2.5e-19 Score=157.15 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=104.7
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||++++.+..... ...+..+.......+..++ ..+.+|||||..+...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~--------------- 65 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRT--------------- 65 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHH---------------
Confidence 489999999999999999999876421 1122111112122223333 4578999999864221
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~ 319 (381)
....+++.+|++++|+|.++..+... .+|+..+.... .+.|+++|+||+|+.+..
T Consensus 66 -----------------------~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 66 -----------------------ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred -----------------------HHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 23456789999999999986543333 34566665532 468999999999997643
Q ss_pred cch---hHH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 320 IMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 320 ~~~---~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
... ... ....+++++++||++|.|++++++++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 123 VVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred ccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 221 111 2345678999999999999999999988764
No 64
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.83 E-value=2.5e-19 Score=156.10 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=103.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|||||||+|++++..... ...+..+.+.....+..++ ..+.+|||||......
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------------- 64 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLE---------------- 64 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHH----------------
Confidence 78999999999999999999876421 1122122222222333333 4577999999854221
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC------CCCeEEEEEeCccC
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY------MDKFIILAVNKCES 315 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~------~~~p~ivV~NK~Dl 315 (381)
....++..+|++++|+|.+++.+... ..|+..+.+.. .+.|+++|+||+|+
T Consensus 65 ----------------------~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 65 ----------------------VRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred ----------------------HHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 23345688999999999987544333 34565555532 36899999999999
Q ss_pred CCccc--chhH-H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 316 PRKGI--MQVS-E-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 316 ~~~~~--~~~~-~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
..+.. .+.. . ....+.+++++||++|.|+++++++|.+.+-
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 123 TKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred ccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 74321 1111 1 1334678999999999999999999987653
No 65
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.83 E-value=1.8e-19 Score=162.44 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=108.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC------cccccCCCCcccccceeeEEeC--------------CceEEEEEcCCCCCc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN------RAIVVDEPGVTRDRMYGRSFWG--------------EHEFMLVDTGGVLNV 224 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~------~~~~~~~~~tt~~~~~~~~~~~--------------~~~~~liDTPG~~~~ 224 (381)
+|+++|++|+|||||+++|++.. .......+++|.+.....+.+. +..+.+|||||+...
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 81 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASL 81 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHH
Confidence 78999999999999999999731 1122233456666655544443 567899999998421
Q ss_pred cCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCC
Q 016883 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (381)
.+........+|++++|+|+..+.+..+.+.+...... +.
T Consensus 82 --------------------------------------~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~--~~ 121 (192)
T cd01889 82 --------------------------------------IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEIL--CK 121 (192)
T ss_pred --------------------------------------HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHc--CC
Confidence 12334556779999999999987776665544444333 78
Q ss_pred eEEEEEeCccCCCcccc----hhHH------H---hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 305 FIILAVNKCESPRKGIM----QVSE------F---WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 305 p~ivV~NK~Dl~~~~~~----~~~~------~---~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
|+++|+||+|+...... +... + ...+++++++||++|+|+++|++++.+.+..
T Consensus 122 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 122 KLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred CEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 99999999999754321 1111 1 0235689999999999999999999987653
No 66
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.82 E-value=1.5e-19 Score=157.14 Aligned_cols=149 Identities=18% Similarity=0.131 Sum_probs=98.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|.+|||||||++++.+... ....+. .|.......+...+..+.+|||||......
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~-~~~~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~------------------ 60 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENA-QSQIIV-PTVGFNVESFEKGNLSFTAFDMSGQGKYRG------------------ 60 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCC-Ccceec-CccccceEEEEECCEEEEEEECCCCHhhHH------------------
Confidence 478999999999999999998642 111121 122222223445667789999999864321
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh----CCCCeEEEEEeCccCCCcc
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN----YMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~----~~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|++++.+... ..++..+.+. ..++|+++|+||+|+.+..
T Consensus 61 --------------------~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~ 120 (162)
T cd04157 61 --------------------LWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL 120 (162)
T ss_pred --------------------HHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC
Confidence 23356789999999999987544322 2333333221 1379999999999997643
Q ss_pred cchhHH-Hhh------CCCceEEEecCCCCCHHHHHHHHHH
Q 016883 320 IMQVSE-FWS------LGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 320 ~~~~~~-~~~------~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
...... ... ..++++++||++|+|+++++++|.+
T Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 121 TAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 222111 111 1235899999999999999999864
No 67
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.82 E-value=1.5e-19 Score=160.82 Aligned_cols=152 Identities=26% Similarity=0.332 Sum_probs=111.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCccccc---------------CCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQP 229 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~---------------~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~ 229 (381)
+|+++|.+|+|||||+|+|++....... ...++|.......+...+..+.+|||||+.+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 4789999999999999999877532211 112344455555556667789999999986421
Q ss_pred hhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEE
Q 016883 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILA 309 (381)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV 309 (381)
..+..++..+|++++|+|+.++......+++..+... +.|+++|
T Consensus 77 ----------------------------------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~i~iv 120 (189)
T cd00881 77 ----------------------------------SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREG--GLPIIVA 120 (189)
T ss_pred ----------------------------------HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHC--CCCeEEE
Confidence 2344566789999999999988877777777777664 8999999
Q ss_pred EeCccCCCcccch----hH-HHh---------------hCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 310 VNKCESPRKGIMQ----VS-EFW---------------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 310 ~NK~Dl~~~~~~~----~~-~~~---------------~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
+||+|+....... .. ... ....+++++||++|.|+++++.++.+.++
T Consensus 121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 121 INKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred EECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 9999998632211 11 111 13568999999999999999999998875
No 68
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.82 E-value=2e-19 Score=156.50 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=103.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCC-CCcccccceeeEEeC----CceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDE-PGVTRDRMYGRSFWG----EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~-~~tt~~~~~~~~~~~----~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
+|+++|.+|+|||||++++.+.... ... +..+.+.....+.+. ...+.+|||||..+...
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------- 66 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFT--KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA------------- 66 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHH-------------
Confidence 7899999999999999999987532 222 211222212223333 34688999999754221
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
....+++.+|++++|+|++++.+... ..|+..+.+...+.|+++|+||+|+...
T Consensus 67 -------------------------~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 67 -------------------------ITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121 (162)
T ss_pred -------------------------hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc
Confidence 23456789999999999987544433 3455556555568999999999999764
Q ss_pred ccchh---HH-HhhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 319 GIMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 319 ~~~~~---~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
..... .. ....+.+++++||++|.|+++++++|.+.
T Consensus 122 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 122 AVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 33211 11 23457799999999999999999998754
No 69
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.82 E-value=2.8e-19 Score=161.26 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=111.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCC-CcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~-~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..+|+++|..|||||||+.++..... ...+. ..+.+.....+..++ ..+.+|||+|..++..
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~------------- 70 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST--ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT------------- 70 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-------------
Confidence 56999999999999999999997643 12222 122222233344555 4577999999965332
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|.+++.+... ..|+..+.+...+.|+++|+||+|+...
T Consensus 71 -------------------------l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~ 125 (189)
T cd04121 71 -------------------------IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFK 125 (189)
T ss_pred -------------------------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhc
Confidence 23356789999999999998766655 4577777776678999999999999653
Q ss_pred ccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.... ...+ ...+.+++++||++|.|++++|++|.+.+..
T Consensus 126 ~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 126 RQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred cCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 2211 1111 3457799999999999999999999986653
No 70
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.82 E-value=2.4e-19 Score=157.32 Aligned_cols=151 Identities=19% Similarity=0.169 Sum_probs=101.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC--CceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||++++++.... ..+..+........+... ...+.+|||||..++..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA--------------- 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--CCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchH---------------
Confidence 48999999999999999999987632 122212211111122222 34578999999875322
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC----CCCeEEEEEeCccCC
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY----MDKFIILAVNKCESP 316 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~----~~~p~ivV~NK~Dl~ 316 (381)
....++..+|++++|+|.+++.+... ..++..+.+.. .+.|+++|+||+|+.
T Consensus 65 -----------------------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 65 -----------------------MQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred -----------------------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 22245678999999999987655443 34555555421 478999999999997
Q ss_pred Ccccchh---HH-HhhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 317 RKGIMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 317 ~~~~~~~---~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
....... .. ....+.+++++||++|+|+++++++|.+.
T Consensus 122 ~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 122 HKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred ccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 6322211 11 12346689999999999999999998753
No 71
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.3e-19 Score=178.40 Aligned_cols=169 Identities=31% Similarity=0.378 Sum_probs=136.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.+.|+++|.||||||||+|+|..++...+++.+|||++.....++++|.++.++||+|+.+ ...+.+|++|+
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe---~~~~~iE~~gI----- 339 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE---ESNDGIEALGI----- 339 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc---ccCChhHHHhH-----
Confidence 4699999999999999999999999999999999999999999999999999999999986 34556778876
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhC----------CCCeEEEEEeC
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY----------MDKFIILAVNK 312 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~----------~~~p~ivV~NK 312 (381)
+++...+..+|+|++|+|+....+.++..+.+.+.... ...+++++.||
T Consensus 340 ---------------------~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk 398 (531)
T KOG1191|consen 340 ---------------------ERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANK 398 (531)
T ss_pred ---------------------HHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEech
Confidence 57888899999999999998878888877666666531 24789999999
Q ss_pred ccCCCcc--cch-hHHHh----hCCCce-EEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 313 CESPRKG--IMQ-VSEFW----SLGFSP-LPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 313 ~Dl~~~~--~~~-~~~~~----~~~~~~-~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
+|+..+- ... ...+. ...+++ .++|+++++|++.|.+.+.+.+.....
T Consensus 399 ~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 399 SDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred hhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 9997751 111 11111 113444 569999999999999999888775554
No 72
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.82 E-value=2.8e-19 Score=157.78 Aligned_cols=153 Identities=20% Similarity=0.191 Sum_probs=103.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|.+|||||||++++.+.... . ..+|.......+...+..+.+|||||..+...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~------------------ 58 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRP------------------ 58 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C--cCCcCceeEEEEEECCEEEEEEECCCChhcch------------------
Confidence 5789999999999999999987432 2 22333333344566777899999999865322
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHH-H-hCCCCeEEEEEeCccCCCcccc
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLR-K-NYMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~-~-~~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
.+..++..+|+++||+|.++..+..+ ..++..+. . ...+.|+++|+||+|+......
T Consensus 59 --------------------~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 118 (169)
T cd04158 59 --------------------LWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV 118 (169)
T ss_pred --------------------HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCH
Confidence 33356688999999999987533322 23333332 2 1245899999999999654222
Q ss_pred hhH-HHhh---C----CCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 322 QVS-EFWS---L----GFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 322 ~~~-~~~~---~----~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+.. .... . .+.++++||++|.|++++++||.+.+....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 119 EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcc
Confidence 211 1111 1 235789999999999999999988776543
No 73
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.82 E-value=6.4e-19 Score=158.55 Aligned_cols=172 Identities=22% Similarity=0.291 Sum_probs=118.5
Q ss_pred CCCCCCCCCEEEEEcCCCCChhHHHHHHhCCC-cccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhh
Q 016883 156 GNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMED 234 (381)
Q Consensus 156 ~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~ 234 (381)
...+....++|+++|.+|+|||||+|+|++.. ...++..+++|+....... +..+.+|||||+..... .....+
T Consensus 17 ~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~-~~~~~~- 91 (196)
T PRK00454 17 EQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKV-SKEEKE- 91 (196)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCC-CchHHH-
Confidence 34455567899999999999999999999874 4566667777766554332 46789999999864221 110011
Q ss_pred hhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCcc
Q 016883 235 LAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCE 314 (381)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~D 314 (381)
.+...+ .........++++++|+|+..+.+..+.++.+.+... +.|+++++||+|
T Consensus 92 ----------------------~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~--~~~~iiv~nK~D 146 (196)
T PRK00454 92 ----------------------KWQKLI-EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY--GIPVLIVLTKAD 146 (196)
T ss_pred ----------------------HHHHHH-HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc--CCcEEEEEECcc
Confidence 111111 1122223456789999999888777776677777654 899999999999
Q ss_pred CCCcccchhH-----HHh-hCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 315 SPRKGIMQVS-----EFW-SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 315 l~~~~~~~~~-----~~~-~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+.+....+.. ... ....+++++||++|.|+++++++|.+.+++
T Consensus 147 l~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 147 KLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 9875433221 111 125689999999999999999999988764
No 74
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.82 E-value=3.6e-19 Score=156.44 Aligned_cols=155 Identities=19% Similarity=0.155 Sum_probs=106.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||++++.+.... ....+..+.+.....+..++. .+.+|||||......
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~-------------- 67 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFN-PSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRT-------------- 67 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCC-cccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHH--------------
Confidence 469999999999999999999987532 111222222222223444443 578999999754221
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|++++.+..+ .+++..+.... .+.|+++|+||+|+...
T Consensus 68 ------------------------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 68 ------------------------ITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK 123 (167)
T ss_pred ------------------------HHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 23356789999999999987554444 34555555432 46899999999999753
Q ss_pred ccchh---HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 319 GIMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~~~~~---~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
..... .. ....+.+++++||++|.|++++++++.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 124 RVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 32111 11 2335678999999999999999999988764
No 75
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.82 E-value=2.3e-19 Score=156.22 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=103.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|++|+|||||+|++++..... ...+..+.......+.+++ ..+.+|||||......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~--------------- 65 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRS--------------- 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHH---------------
Confidence 489999999999999999999886432 1112111111122233333 4578999999753221
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+....
T Consensus 66 -----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 122 (163)
T cd01860 66 -----------------------LAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR 122 (163)
T ss_pred -----------------------HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC
Confidence 22345678999999999987543333 44556555543 568999999999987432
Q ss_pred cch---hHH-HhhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 320 IMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 320 ~~~---~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
... ... ....+.+++++||++|.|+++++++|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 123 QVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 211 111 233467899999999999999999998875
No 76
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.82 E-value=2.9e-19 Score=158.98 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=106.1
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||++++..... ...+.+|........+..++ ..+.+|||+|.......
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL-------------- 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhh--------------
Confidence 4899999999999999999998763 23343343332222344555 35779999999764332
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
...++..+|++++|+|.+++.+..+. .|+..+.....+.|+++|+||+|+....
T Consensus 66 ------------------------~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (175)
T cd01874 66 ------------------------RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121 (175)
T ss_pred ------------------------hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh
Confidence 12466789999999999886655543 3666676655689999999999986532
Q ss_pred cc------------hh---HHH-hhCC-CceEEEecCCCCCHHHHHHHHHHH
Q 016883 320 IM------------QV---SEF-WSLG-FSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 320 ~~------------~~---~~~-~~~~-~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
.. .. ..+ ...+ .+++++||++|.|++++++.+.+.
T Consensus 122 ~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred hhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 10 00 011 1234 589999999999999999998764
No 77
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.82 E-value=4.2e-19 Score=155.23 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=106.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||++++.+.... ....+..+.......+..++. .+.+|||||......
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------------- 67 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFN-LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRA-------------- 67 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHH--------------
Confidence 358999999999999999999987642 222333333333334444553 578999999753211
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
....++..++++++|+|+++..+..+ .+|+..+.+.. .+.|+++|+||+|+...
T Consensus 68 ------------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 68 ------------------------ITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred ------------------------HHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 23356688999999999987544444 34566565543 25899999999998754
Q ss_pred ccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.... ...+ ...+.+++++||++|.|++++++++.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 124 RAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3211 1111 23467899999999999999999998754
No 78
>PTZ00369 Ras-like protein; Provisional
Probab=99.82 E-value=3.4e-19 Score=160.28 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=108.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||++++.+.... ..+.+|........+.+++. .+.+|||||..++..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------------- 68 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSA-------------- 68 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchh--------------
Confidence 469999999999999999999987532 22333332222333344443 467899999876443
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|++++.+..+ ..+...+.+.. .+.|+++|+||+|+..
T Consensus 69 ------------------------l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 69 ------------------------MRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred ------------------------hHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 22246678999999999987554333 34455554432 3789999999999865
Q ss_pred cccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 318 KGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
..... .... ...+.+++++||++|.|+++++++|.+.+.+..
T Consensus 125 ~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~~ 170 (189)
T PTZ00369 125 ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYL 170 (189)
T ss_pred ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence 42211 1111 234678999999999999999999998876543
No 79
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.82 E-value=2.5e-19 Score=165.26 Aligned_cols=158 Identities=19% Similarity=0.115 Sum_probs=110.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcc-cccCCCCcccccceeeEEeC--CceEEEEEcCCCCCccCCCchhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~-~~~~~~~tt~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~ 237 (381)
...++|+++|.+|||||||+++++..... ....+.+.+.. ...+..+ ...+.+|||||...+..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~~----------- 77 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFGG----------- 77 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEE--EEEEEECCeEEEEEEEECCCchhhhh-----------
Confidence 44679999999999999999998866531 11112222221 1222222 34678999999876433
Q ss_pred hhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCC
Q 016883 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESP 316 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~ 316 (381)
....++..+|++|+|+|.+++.+... ..|+..+.+...+.|+++|+||+|+.
T Consensus 78 ---------------------------~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 78 ---------------------------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred ---------------------------hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 22246788999999999998655544 45777776655689999999999986
Q ss_pred Ccccch-hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 317 RKGIMQ-VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 317 ~~~~~~-~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
...... ...+ ...+++++++||++|.|++++|++|.+.+.+.
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred hccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence 533211 1122 23567899999999999999999999887654
No 80
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.82 E-value=4.9e-19 Score=154.05 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=106.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|+|||||++++.+.... ....+..+.+.....+..++ ..+.+|||||.....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------------- 63 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR---------------- 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH----------------
Confidence 37999999999999999999987641 12222222222223344444 357899999975321
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~ 319 (381)
.....++..+|++++|+|++++.+... ..|+..+.... .+.|+++|+||+|+....
T Consensus 64 ----------------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~ 121 (164)
T smart00175 64 ----------------------SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR 121 (164)
T ss_pred ----------------------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc
Confidence 133456688999999999987555443 33555555433 479999999999987632
Q ss_pred cch---hHH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 320 IMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 320 ~~~---~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
... ... ....+++++++||++|.|+++++++|.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 122 QVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred CCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 211 111 13457789999999999999999999987643
No 81
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=3.4e-19 Score=156.08 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=104.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|+|||||++++......... .+..+.+.....+.+++ ..+.+|||||...+.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------------- 66 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQ-GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFR--------------- 66 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccC-CCccceEEEEEEEEECCEEEEEEEEECCChHHHH---------------
Confidence 459999999999999999999876532211 11111222333345555 367899999975321
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
.....++..+|++++|+|++++.+... ..|+..+... ..+.|+++|+||+|+...
T Consensus 67 -----------------------~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 67 -----------------------TITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred -----------------------HHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 133456688999999999998654443 4566666553 247899999999999754
Q ss_pred ccch---hHHH-hhCC-CceEEEecCCCCCHHHHHHHHHHHh
Q 016883 319 GIMQ---VSEF-WSLG-FSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 319 ~~~~---~~~~-~~~~-~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.... .... ...+ ..++++||++|.|++++++++.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 124 REVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred cccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3211 1111 2233 3689999999999999999998753
No 82
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.82 E-value=6.1e-19 Score=155.25 Aligned_cols=155 Identities=16% Similarity=0.113 Sum_probs=106.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||++++.+...... ..+..+.......+..++ ..+.+|||||.....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------- 67 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR--------------- 67 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH---------------
Confidence 46999999999999999999998753222 122222222222333443 357899999975321
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
.....+++.+|++++|+|++++.+..+ ..|+..+++. ..+.|+++|+||+|+...
T Consensus 68 -----------------------~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 68 -----------------------SITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124 (168)
T ss_pred -----------------------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 133456789999999999987544444 3455555543 247899999999999753
Q ss_pred ccchh--H-H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 319 GIMQV--S-E-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~~~~~--~-~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
..... . . ....+.+++++||++|+|+++++.++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 125 REVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22111 1 1 2345778999999999999999999988764
No 83
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.82 E-value=4.4e-19 Score=159.62 Aligned_cols=155 Identities=16% Similarity=0.149 Sum_probs=107.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|||||||++++.+.... ..+..+........+..++ ..+.+|||||...+...+.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~------------- 66 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP--QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRS------------- 66 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccccc-------------
Confidence 7899999999999999999987642 2222222112122233344 3578999999876443222
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCCccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
.++..+|++++|+|.++..+.... .|+..+.....+.|+++|+||+|+.....
T Consensus 67 -------------------------~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 67 -------------------------LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARN 121 (189)
T ss_pred -------------------------ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChh
Confidence 346789999999999986555443 46777776556899999999999975432
Q ss_pred ch---------------hHHH-hhCC-CceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 321 MQ---------------VSEF-WSLG-FSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 321 ~~---------------~~~~-~~~~-~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.. ...+ ...+ .+++++||++|.|++++|+++.+.+....
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 122 ERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence 11 1111 1223 57899999999999999999998776433
No 84
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.81 E-value=4e-19 Score=155.90 Aligned_cols=153 Identities=16% Similarity=0.107 Sum_probs=105.0
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCccc-ccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTR-DRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~-~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.+|+++|.+|||||||++++..... ....+++.. +.....+..++. .+.+|||||......
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------------- 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA-------------- 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHH--------------
Confidence 5899999999999999999998753 233332321 111222334443 578999999754221
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
....+++.+|++++|+|++++.+... ..|+..+... ..+.|+++|+||+|+...
T Consensus 67 ------------------------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 67 ------------------------VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred ------------------------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 33456789999999999997654443 3455544442 246899999999999764
Q ss_pred ccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.... .... ...+.+++++||++|+|+++++.++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~~ 164 (166)
T cd04122 123 RDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIY 164 (166)
T ss_pred cCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3221 1111 235678999999999999999999887653
No 85
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.81 E-value=4.7e-19 Score=157.26 Aligned_cols=154 Identities=16% Similarity=0.158 Sum_probs=104.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCC-cccccceeeEEeC------------CceEEEEEcCCCCCccCCCc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPG-VTRDRMYGRSFWG------------EHEFMLVDTGGVLNVSKSQP 229 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~-tt~~~~~~~~~~~------------~~~~~liDTPG~~~~~~~~~ 229 (381)
..+|+++|.+|||||||++++..... ...... .+.+.....+.+. ...+.+|||||.....
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 77 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF--NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFR---- 77 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHH----
Confidence 35899999999999999999988653 122211 1111111112221 2457899999975422
Q ss_pred hhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeE
Q 016883 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFI 306 (381)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ 306 (381)
.....++..+|++++|+|++++.+..+ ..|+..+.... .+.|+
T Consensus 78 ----------------------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 123 (180)
T cd04127 78 ----------------------------------SLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDI 123 (180)
T ss_pred ----------------------------------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE
Confidence 133456789999999999987555444 34666565532 46899
Q ss_pred EEEEeCccCCCcccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 307 ILAVNKCESPRKGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 307 ivV~NK~Dl~~~~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
++|+||+|+.+..... ...+ ...+.+++++||++|.|+++++++|.+.+.
T Consensus 124 iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 124 VLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred EEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999997542211 1111 235678999999999999999999987654
No 86
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=7.8e-19 Score=159.44 Aligned_cols=155 Identities=17% Similarity=0.156 Sum_probs=104.9
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCc-ccccceeeEEeC-C--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGV-TRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~t-t~~~~~~~~~~~-~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
++|+++|.+|||||||++++++.... ..+..| +.+.....+.++ + ..+.+|||||...+..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~--~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~------------- 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS--QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG------------- 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh-------------
Confidence 37899999999999999999987532 222212 122222234444 3 3578999999864322
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-----CCCCeEEEEEeCc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-----YMDKFIILAVNKC 313 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-----~~~~p~ivV~NK~ 313 (381)
....++..+|++++|+|.+++.+... ..|+..+... ..+.|+++|+||+
T Consensus 66 -------------------------~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~ 120 (201)
T cd04107 66 -------------------------MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKC 120 (201)
T ss_pred -------------------------hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECC
Confidence 23356789999999999987655444 3345544432 1478999999999
Q ss_pred cCCCccc--chh-HHH-hhCC-CceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 314 ESPRKGI--MQV-SEF-WSLG-FSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 314 Dl~~~~~--~~~-~~~-~~~~-~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
|+.+... .+. ..+ ...+ .+++++||++|.|+++++++|.+.+.+.
T Consensus 121 Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 121 DLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred CcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9974221 111 121 2345 5899999999999999999999877643
No 87
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.81 E-value=6.9e-19 Score=156.96 Aligned_cols=153 Identities=15% Similarity=0.106 Sum_probs=109.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+++++|.+|||||||+.++..... ...+..|........+..++ ..+.+|||+|..++.....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~------------ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRP------------ 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccch------------
Confidence 3799999999999999999998764 22333333222222344444 3578999999976554322
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.++..+|++++|+|.++..+.... .|+..+++...+.|+++|+||+|+.+..
T Consensus 68 --------------------------~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (176)
T cd04133 68 --------------------------LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDK 121 (176)
T ss_pred --------------------------hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccCh
Confidence 467899999999999987776663 5777777655689999999999996532
Q ss_pred -----------cch--hHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 320 -----------IMQ--VSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 320 -----------~~~--~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
... ...+ ...+. +++++||++|.||+++|+.+.+.+.
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 122 QYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred hhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 111 1111 23455 5899999999999999999998653
No 88
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.81 E-value=9.3e-19 Score=158.84 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=109.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCc-ccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGV-TRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~t-t~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
.++|+++|.+|||||||++++.+.... ..+..| +.+.....+..++. .+.+|||||......
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------------- 70 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT------------- 70 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHH-------------
Confidence 569999999999999999999987532 112111 11222223344443 577999999864322
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|++++.+..+ ..|+..+.......|+++|+||+|+...
T Consensus 71 -------------------------~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 71 -------------------------ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER 125 (199)
T ss_pred -------------------------HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 23356788999999999987654444 3466666665567899999999999764
Q ss_pred ccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.... ...+ ...+.+++++||++|.|+++++++|.+.+....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~ 170 (199)
T cd04110 126 KVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAK 170 (199)
T ss_pred cccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence 3221 1111 245678999999999999999999988776543
No 89
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.81 E-value=1.1e-18 Score=151.62 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=104.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
++|+++|.+|||||||+++++.... .....+++.+........++ ..+.+|||||..+...
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------------- 63 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAA--------------- 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhH---------------
Confidence 3799999999999999999997753 23344444433333334443 3578999999864322
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|..++-+... ..+...+... ..++|+++|+||+|+...
T Consensus 64 -----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 120 (164)
T cd04139 64 -----------------------IRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK 120 (164)
T ss_pred -----------------------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc
Confidence 23356678999999999886433322 2343333332 247999999999999762
Q ss_pred ccc--hh-HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 319 GIM--QV-SE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~~~--~~-~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
... .. .. ....+.+++++||++|+|++++++++.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 121 RQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred cccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 211 11 11 1235679999999999999999999988764
No 90
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.81 E-value=4.2e-19 Score=158.80 Aligned_cols=155 Identities=16% Similarity=0.083 Sum_probs=106.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC-C--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~-~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
+|+++|.+|||||||++++.+.... ..+..+........+... + ..+.+|||||..+...
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR--------------- 64 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH---------------
Confidence 7899999999999999999987632 222223222222223333 2 2578999999864322
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|.++..+..+. .|+..+.....+.|+++|+||+|+....
T Consensus 65 -----------------------~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (187)
T cd04132 65 -----------------------LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDK 121 (187)
T ss_pred -----------------------HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCc
Confidence 122356789999999999976555443 3555555444579999999999986532
Q ss_pred -------cchhHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 320 -------IMQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 320 -------~~~~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
..+...+ ...+. +++++||++|.|++++++.+.+.+....
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 122 NLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred cccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhh
Confidence 1111111 23455 8899999999999999999998876544
No 91
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.81 E-value=8.2e-19 Score=161.15 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=106.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCC-CCcccccceeeEEeCC---ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDE-PGVTRDRMYGRSFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~-~~tt~~~~~~~~~~~~---~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
+|+++|.+|||||||++++.+... ...+ +..+.+.....+.+++ ..+.+|||||...+..
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~--~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~-------------- 65 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGF--GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGK-------------- 65 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHH--------------
Confidence 789999999999999999998753 2222 2222333333344433 4678999999753221
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC----CCCeEEEEEeCccC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY----MDKFIILAVNKCES 315 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~----~~~p~ivV~NK~Dl 315 (381)
....++..+|++++|+|++++.+..+ ..|+..+.+.. .+.|+++|+||+|+
T Consensus 66 ------------------------l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL 121 (215)
T cd04109 66 ------------------------MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred ------------------------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence 23345789999999999997655444 34666665542 24689999999999
Q ss_pred CCcccchh---HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 316 PRKGIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 316 ~~~~~~~~---~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
........ ..+ ...+.+++++||++|+|++++++++.+.+...
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 122 EHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred ccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 74322111 111 23567899999999999999999999887654
No 92
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.81 E-value=9e-19 Score=152.83 Aligned_cols=153 Identities=19% Similarity=0.170 Sum_probs=103.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcc-cccceeeEEeC---CceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt-~~~~~~~~~~~---~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
+|+++|.+|||||||++++..........+..++ .+.....+... ...+.+|||||.....
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------------- 66 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS--------------- 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH---------------
Confidence 7899999999999999999864211223333222 12211222222 2467899999974321
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.....++..+|++++|+|.++..+..+ ..|+..+.....+.|+++|+||+|+.+..
T Consensus 67 -----------------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 123 (164)
T cd04101 67 -----------------------DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA 123 (164)
T ss_pred -----------------------HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc
Confidence 123356689999999999987544333 34666665543579999999999997643
Q ss_pred cchh---HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 320 IMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 320 ~~~~---~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.... .. ....+.+++++||++|.|++++++++.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 124 EVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 2221 11 233467899999999999999999998764
No 93
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.81 E-value=7.1e-19 Score=159.43 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=106.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|||||||++++++.... ..+..++.......+.+++ ..+.+|||||...+..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------------- 62 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA---------------- 62 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH----------------
Confidence 5799999999999999999987632 3333344333333455555 4578999999865322
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCCc-
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRK- 318 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~~- 318 (381)
....++..+|++++|+|++++.+..+ ..++..+.+.. .++|+++|+||+|+...
T Consensus 63 ----------------------~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~ 120 (198)
T cd04147 63 ----------------------MRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE 120 (198)
T ss_pred ----------------------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc
Confidence 12245678999999999987544443 33444444432 37999999999998653
Q ss_pred ccchh---HHHh--hCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 319 GIMQV---SEFW--SLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 319 ~~~~~---~~~~--~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
..... .... ..+.+++++||++|.|++++++++.+.+.....
T Consensus 121 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 167 (198)
T cd04147 121 RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANLPYN 167 (198)
T ss_pred ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhcccc
Confidence 21111 1111 234688999999999999999999998774443
No 94
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.81 E-value=1.1e-18 Score=156.99 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=106.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccc-eeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRM-YGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~-~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
+|+++|.+|||||||+++++..... .+.+.+|..... ...+..++. .+.+|||||......
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------------- 65 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA--------------- 65 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh---------------
Confidence 7999999999999999999987642 222332322211 223445554 356999999865322
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcc-
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG- 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~- 319 (381)
....++..+|++++|+|.++..+... ..|+..+.....+.|+++|+||+|+....
T Consensus 66 -----------------------~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~ 122 (193)
T cd04118 66 -----------------------MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDR 122 (193)
T ss_pred -----------------------hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccccc
Confidence 12245678999999999987544433 34666666554579999999999986432
Q ss_pred ---cc---hhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 320 ---IM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 320 ---~~---~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.. +...+ ...+.+++++||++|.|++++++++.+.+.+.
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 123 SLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFVSR 168 (193)
T ss_pred ccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 11 11111 23457889999999999999999999877544
No 95
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.81 E-value=1.2e-18 Score=152.93 Aligned_cols=155 Identities=15% Similarity=0.127 Sum_probs=102.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|++|||||||+|++...... ....+..+.+.....+.+++. .+.+|||||......
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------------- 64 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQS---------------- 64 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHh----------------
Confidence 7899999999999999999987532 111121122222223444444 456999999754221
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH-HHHHHHHHhC-----CCCeEEEEEeCccCC
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-----MDKFIILAVNKCESP 316 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~-~~~~~l~~~~-----~~~p~ivV~NK~Dl~ 316 (381)
....+++.+|++++|+|++++.+.... .|...+.... .++|+++|+||+|+.
T Consensus 65 ----------------------~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 65 ----------------------LGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred ----------------------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 233567889999999999875443332 3333333322 279999999999997
Q ss_pred Cccc--chhH-HH-hhCC-CceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 317 RKGI--MQVS-EF-WSLG-FSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 317 ~~~~--~~~~-~~-~~~~-~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.+.. .+.. .. ...+ .+++++||++|.|++++++++.+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 123 EKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred cccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4221 1111 11 2233 6899999999999999999999876654
No 96
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.81 E-value=7.8e-19 Score=152.74 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=101.8
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCccc-ccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~-~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.+|+++|++|+|||||+|++.+..... .....+.+.. ...+.+.+ ..+.+|||||......
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~-------------- 64 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFK--VKTLTVDGKKVKLAIWDTAGQERFRT-------------- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEE--EEEEEECCEEEEEEEEECCCchhhhh--------------
Confidence 378999999999999999999875421 1222222221 12223333 4578999999754322
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~ 317 (381)
.....++.+|++++|+|.+++.+... ..++..+.+.. .+.|+++|+||+|+..
T Consensus 65 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 65 ------------------------LTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred ------------------------hhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 22345678999999999987544443 33555555432 4789999999999974
Q ss_pred cccchh--HHH-hhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 318 KGIMQV--SEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 318 ~~~~~~--~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
...... ..+ ...+.+++++||++|.|++++++.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 121 REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 332211 111 2357789999999999999999998775
No 97
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.81 E-value=1.1e-18 Score=151.95 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=103.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|++|||||||++++.+..... ...+..+.......+..++ ..+.+|||||+.....
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---------------- 64 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKE-DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRS---------------- 64 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHH----------------
Confidence 78999999999999999999876321 1112122222222334444 3578999999854221
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~~~ 320 (381)
....++..+|++++|+|++++.+... ..++..++.. ..+.|+++|+||+|+.....
T Consensus 65 ----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~ 122 (161)
T cd04113 65 ----------------------VTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQRE 122 (161)
T ss_pred ----------------------hHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhcc
Confidence 23356688999999999998655444 3455554432 24789999999999975432
Q ss_pred ch---hHH-HhhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 321 MQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 321 ~~---~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
.. ... ....+++++++||++|.|++++++++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 123 VTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred CCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 21 111 23456789999999999999999999875
No 98
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.81 E-value=6.8e-19 Score=155.23 Aligned_cols=150 Identities=15% Similarity=0.122 Sum_probs=103.8
Q ss_pred EEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
|+++|.+|||||||++++.+.... ..+..+........+..++. .+.+|||||.......+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------------- 63 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLR--------------- 63 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC--CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhc---------------
Confidence 479999999999999999987642 22222332222223444444 47899999987543321
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCCccc-
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~- 320 (381)
..++..+|++++|+|.++..+.... .|+..+.+...+.|+++|+||+|+.....
T Consensus 64 -----------------------~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~ 120 (174)
T smart00174 64 -----------------------PLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKST 120 (174)
T ss_pred -----------------------hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhh
Confidence 1356789999999999876444432 46777766667899999999999865321
Q ss_pred -----------ch---hHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHh
Q 016883 321 -----------MQ---VSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 321 -----------~~---~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.. ...+ ...+. +++++||++|.|++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 121 LRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred hhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 00 0111 23444 789999999999999999998765
No 99
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.80 E-value=7.2e-19 Score=153.80 Aligned_cols=147 Identities=22% Similarity=0.266 Sum_probs=97.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|.+|||||||++++...... ...| |.......+......+.+|||||+..+.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~--~~~p--t~g~~~~~~~~~~~~~~l~D~~G~~~~~------------------- 58 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------------------- 58 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc--ccCC--CCCcceEEEEECCEEEEEEECCCCHhHH-------------------
Confidence 7899999999999999999765432 2222 2222233345566788999999985422
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChh--HHHHHHHHHH-hCCCCeEEEEEeCccCCCcccc
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
.....++..+|+++||+|+++..+.. ..++...+.. .....|+++|+||+|+.+....
T Consensus 59 -------------------~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 119 (159)
T cd04150 59 -------------------PLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSA 119 (159)
T ss_pred -------------------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCH
Confidence 13345678999999999998743222 2223333322 2246899999999998653221
Q ss_pred -hhHHHh------hCCCceEEEecCCCCCHHHHHHHHHH
Q 016883 322 -QVSEFW------SLGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 322 -~~~~~~------~~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
+..... ..++.++++||++|.|++++++||.+
T Consensus 120 ~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 120 AEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 111111 12335679999999999999999864
No 100
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.80 E-value=8.9e-19 Score=153.43 Aligned_cols=153 Identities=17% Similarity=0.210 Sum_probs=104.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|||||||+++++.... ...+++++.......+.+++. .+.+|||||......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------------- 62 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT---------------- 62 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc----------------
Confidence 479999999999999999987542 334444443333333444444 467999999974211
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh---CCCCeEEEEEeCccCCCc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN---YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~---~~~~p~ivV~NK~Dl~~~ 318 (381)
.....++..+|++++|+|++++.+... ..|+..+... ..+.|+++|+||+|+...
T Consensus 63 ---------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 63 ---------------------EQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred ---------------------chHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 022345678999999999987644443 3355555543 237999999999998653
Q ss_pred ccch---hHHH-hhCCCceEEEecCCC-CCHHHHHHHHHHHhh
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISG-TGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g-~gi~~l~~~i~~~l~ 356 (381)
.... ...+ ...+.+++++||++| .|++++|+.+.+.+.
T Consensus 122 ~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 122 RQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 2211 1111 235678999999999 599999999987653
No 101
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.80 E-value=7.9e-19 Score=156.01 Aligned_cols=151 Identities=15% Similarity=0.106 Sum_probs=103.6
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+++++|.+|||||||+.++..... ...+..+........+..++ ..+.+|||||.......
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL-------------- 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhh--------------
Confidence 3899999999999999999997653 23333333222222333444 35779999998654331
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
...++..+|++|+|+|.+++.+..+. .|+..+.....+.|+++|+||+|+.+..
T Consensus 66 ------------------------~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~ 121 (174)
T cd01871 66 ------------------------RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121 (174)
T ss_pred ------------------------hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccCh
Confidence 22456789999999999986555553 3666666555679999999999986432
Q ss_pred c------------chh---HHH-hhCC-CceEEEecCCCCCHHHHHHHHHHH
Q 016883 320 I------------MQV---SEF-WSLG-FSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 320 ~------------~~~---~~~-~~~~-~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
. ... ..+ ...+ .+++++||++|+|++++++.+.+.
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 1 000 111 2234 378999999999999999998764
No 102
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.80 E-value=1.5e-18 Score=154.30 Aligned_cols=152 Identities=22% Similarity=0.235 Sum_probs=101.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|.+|||||||++++...... ...| |.......+...+..+.+|||||......
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~l~l~D~~G~~~~~~---------------- 72 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--TTIP--TIGFNVETVTYKNISFTVWDVGGQDKIRP---------------- 72 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCC--ccccceEEEEECCEEEEEEECCCChhhHH----------------
Confidence 469999999999999999999755432 2222 22222233455667889999999864321
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHH-HH-hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWL-RK-NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l-~~-~~~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++|+|+|++++.+..+ .+++..+ .. ...+.|+++|+||+|+....
T Consensus 73 ----------------------~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 130 (175)
T smart00177 73 ----------------------LWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM 130 (175)
T ss_pred ----------------------HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC
Confidence 33456789999999999987533322 2333333 22 23468999999999986532
Q ss_pred cchh-HHHh------hCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 320 IMQV-SEFW------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 320 ~~~~-~~~~------~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.... .... ...+.++++||++|+|++++++||.+.+.
T Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 131 KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHhc
Confidence 1111 1111 12235678999999999999999988753
No 103
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.80 E-value=8.7e-19 Score=152.51 Aligned_cols=147 Identities=23% Similarity=0.275 Sum_probs=99.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|++|+|||||++++...... ...+ |.......+...+..+.+|||||..++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------------- 57 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTIP--TIGFNVETVTYKNLKFQVWDLGGQTSIR------------------- 57 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcCC--ccCcCeEEEEECCEEEEEEECCCCHHHH-------------------
Confidence 5789999999999999999776532 2122 2222333455567788999999986422
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChh--HHHHHHHHHH-hCCCCeEEEEEeCccCCCcccc
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
..+..++..+|++++|+|+++..+.. ...+...++. ...++|+++|+||+|+.+....
T Consensus 58 -------------------~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~ 118 (158)
T cd04151 58 -------------------PYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE 118 (158)
T ss_pred -------------------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH
Confidence 13445678999999999998643222 2333333332 2247999999999998754321
Q ss_pred hhH-HHhh------CCCceEEEecCCCCCHHHHHHHHHH
Q 016883 322 QVS-EFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 322 ~~~-~~~~------~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
... .... .+.+++++||++|.|+++++++|.+
T Consensus 119 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 111 1111 1346999999999999999999864
No 104
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.80 E-value=8.1e-19 Score=157.29 Aligned_cols=150 Identities=19% Similarity=0.191 Sum_probs=102.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|.+|||||||+|++.+...... .+|.......+..++..+.+|||||.....
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~----------------- 75 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELAIGNIKFTTFDLGGHQQAR----------------- 75 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEEECCEEEEEEECCCCHHHH-----------------
Confidence 46999999999999999999998754322 123334444556677889999999985421
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHH-hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.....++..+|++++|+|++++..... .++...+.. ...++|+++|+||+|+....
T Consensus 76 ---------------------~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 134 (184)
T smart00178 76 ---------------------RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134 (184)
T ss_pred ---------------------HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC
Confidence 133456789999999999987532222 223232221 22489999999999986432
Q ss_pred cchhHH-H---hh----------CCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 320 IMQVSE-F---WS----------LGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 320 ~~~~~~-~---~~----------~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
..+... . .. ....++++||++|+|++++++||.+.
T Consensus 135 ~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 135 SEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 122111 1 11 12358999999999999999999764
No 105
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.80 E-value=1.2e-18 Score=154.66 Aligned_cols=149 Identities=19% Similarity=0.208 Sum_probs=101.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|.+|+|||||++++......... .|.......+.+.+..+.+|||||.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~l~D~~G~~~~~----------------- 73 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTS----PTIGSNVEEIVYKNIRFLMWDIGGQESLR----------------- 73 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcC----CccccceEEEEECCeEEEEEECCCCHHHH-----------------
Confidence 458999999999999999999876543222 23223334456667789999999986422
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHH-hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.....++..+|++++|+|++++..... .++...+.. ...++|+++|+||+|+....
T Consensus 74 ---------------------~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~ 132 (174)
T cd04153 74 ---------------------SSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM 132 (174)
T ss_pred ---------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC
Confidence 133456789999999999987533222 223333322 12469999999999986532
Q ss_pred cchhH-HHh------hCCCceEEEecCCCCCHHHHHHHHHH
Q 016883 320 IMQVS-EFW------SLGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 320 ~~~~~-~~~------~~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
..+.. ... ..+++++++||++|+|+++++++|.+
T Consensus 133 ~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 133 TPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 11111 111 23457899999999999999999864
No 106
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.80 E-value=1e-18 Score=157.74 Aligned_cols=144 Identities=19% Similarity=0.227 Sum_probs=100.6
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCccccc---------------CCCCcccccceeeEEeCCceEEEEEcCCCCCccCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~---------------~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~ 228 (381)
.+|+++|.+|+|||||+++|+........ ...++|.......+..++..+.+|||||+.++.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG--- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence 38999999999999999999862111111 113445555555566677789999999996532
Q ss_pred chhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEE
Q 016883 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIIL 308 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~iv 308 (381)
.....++..+|++++|+|+.++.......++..+... ++|+++
T Consensus 80 -----------------------------------~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~--~~p~ii 122 (194)
T cd01891 80 -----------------------------------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALEL--GLKPIV 122 (194)
T ss_pred -----------------------------------HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEEE
Confidence 1344567899999999999886655555666655554 899999
Q ss_pred EEeCccCCCcccch---h-HHHh--------hCCCceEEEecCCCCCHHHH
Q 016883 309 AVNKCESPRKGIMQ---V-SEFW--------SLGFSPLPISAISGTGTGEL 347 (381)
Q Consensus 309 V~NK~Dl~~~~~~~---~-~~~~--------~~~~~~~~vSA~~g~gi~~l 347 (381)
|+||+|+....... . .... ..+.+++++||++|.|++++
T Consensus 123 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 123 VINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 99999997543211 1 1111 23668999999999888654
No 107
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=1e-18 Score=156.70 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=107.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
++|+++|.+|||||||++++.+..... ...+..+.+.....+..++. .+.+|||||......
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------------- 64 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRS--------------- 64 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHh---------------
Confidence 379999999999999999999876421 11221222222223444443 467999999754221
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|.+++.+... ..|+..+.... ...|+++|+||+|+.+..
T Consensus 65 -----------------------~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 65 -----------------------LNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred -----------------------hHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 33456789999999999987554443 34555555432 358999999999987543
Q ss_pred cchh---HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 320 IMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 320 ~~~~---~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
.... .. ....+.+++++||++|.|++++++++.+.+.+...
T Consensus 122 ~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~~~~ 166 (188)
T cd04125 122 VVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLE 166 (188)
T ss_pred cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 2211 11 12356789999999999999999999988765443
No 108
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=1.3e-18 Score=155.62 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=103.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|.+|||||||++++....... ..| |.......+...+..+.+|||||.....
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~--~~p--t~g~~~~~~~~~~~~~~i~D~~Gq~~~~----------------- 75 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDKIR----------------- 75 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc--ccC--CcceeEEEEEECCEEEEEEECCCCHHHH-----------------
Confidence 4589999999999999999998665322 122 2222333455667789999999985422
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHH-hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.....++..+|++|+|+|+++..+..+ .++...+.. ...+.|+++|+||+|+....
T Consensus 76 ---------------------~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~ 134 (181)
T PLN00223 76 ---------------------PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
T ss_pred ---------------------HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence 133456789999999999987543322 222222222 23478999999999987543
Q ss_pred cchhHH-HhhC------CCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 320 IMQVSE-FWSL------GFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 320 ~~~~~~-~~~~------~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
..+... .... .+.++++||++|+|++++++||.+.+.+
T Consensus 135 ~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 222211 1111 1245689999999999999999887754
No 109
>PLN03118 Rab family protein; Provisional
Probab=99.80 E-value=1.7e-18 Score=158.55 Aligned_cols=157 Identities=16% Similarity=0.125 Sum_probs=106.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.+|||||||++++.+......... .+.......+..++ ..+.+|||||...+..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------------- 77 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPT--IGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT------------- 77 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCC--ceeEEEEEEEEECCEEEEEEEEECCCchhhHH-------------
Confidence 357999999999999999999998764322222 22222222333444 3578999999865332
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHH--HHHHHHHh--CCCCeEEEEEeCccC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE--IADWLRKN--YMDKFIILAVNKCES 315 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~--~~~~l~~~--~~~~p~ivV~NK~Dl 315 (381)
....++..+|++++|+|.++..+..+.. |...+... ..+.|+++|+||+|+
T Consensus 78 -------------------------~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 132 (211)
T PLN03118 78 -------------------------LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132 (211)
T ss_pred -------------------------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 2335678899999999998754444432 33333322 236799999999999
Q ss_pred CCcccchhH---H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 316 PRKGIMQVS---E-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 316 ~~~~~~~~~---~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
......... . ....+.+++++||++|.|+++++++|.+.+.+.
T Consensus 133 ~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 133 ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred cccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 754322111 1 123567899999999999999999999887543
No 110
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.80 E-value=1.9e-18 Score=149.72 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=102.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+++++|.+|+|||||+|++.+..... ...+.++.......+...+. .+.+|||||......
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------------- 64 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA---------------- 64 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH----------------
Confidence 78999999999999999999876422 11222222222223333333 578999999753221
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~~ 320 (381)
....++..+|++++|+|.+++.+... ..++..+.... .++|+++|+||+|+.....
T Consensus 65 ----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~ 122 (162)
T cd04123 65 ----------------------LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRV 122 (162)
T ss_pred ----------------------hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 22245678999999999987544433 33455555433 2689999999999975432
Q ss_pred ch--h-HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 321 MQ--V-SE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 321 ~~--~-~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.. . .. ....+.+++++||++|+|++++++++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 123 VSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 21 1 11 234577899999999999999999998764
No 111
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.80 E-value=1.1e-18 Score=157.45 Aligned_cols=154 Identities=15% Similarity=0.094 Sum_probs=106.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||++++...... ..+..|........+..++ ..+.+|||+|...+..
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~--------------- 66 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFP--KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDR--------------- 66 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC--cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhh---------------
Confidence 58999999999999999999987532 2222222222222233444 3578999999976433
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++|+|+|.+++.+.... .|...+.....+.|+++|+||+|+.+..
T Consensus 67 -----------------------l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~ 123 (191)
T cd01875 67 -----------------------LRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123 (191)
T ss_pred -----------------------hhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcCh
Confidence 222466889999999999986655543 3666565555689999999999996432
Q ss_pred c------------c---hhHHH-hhCC-CceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 320 I------------M---QVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 320 ~------------~---~~~~~-~~~~-~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
. . +...+ ...+ ++++++||++|+|++++|+++.+.+..
T Consensus 124 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 1 0 01111 2234 589999999999999999999987653
No 112
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.80 E-value=1.5e-18 Score=155.64 Aligned_cols=151 Identities=21% Similarity=0.174 Sum_probs=103.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|++|||||||++++.+..... + ..|.......+.+++..+.+|||||.....
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~---~-~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~----------------- 77 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQ---H-VPTLHPTSEELTIGNIKFKTFDLGGHEQAR----------------- 77 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcc---c-CCccCcceEEEEECCEEEEEEECCCCHHHH-----------------
Confidence 4589999999999999999999876421 1 123334445566778889999999975321
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~~ 319 (381)
..+..++..+|++++|+|+++..+... ..++..+.+. ..+.|+++|+||+|+....
T Consensus 78 ---------------------~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~ 136 (190)
T cd00879 78 ---------------------RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV 136 (190)
T ss_pred ---------------------HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc
Confidence 133456788999999999986432221 2233333221 2479999999999986532
Q ss_pred cchhHHH-hh-----------------CCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 320 IMQVSEF-WS-----------------LGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 320 ~~~~~~~-~~-----------------~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
..+.... .. ..++++++||++|+|++++++||.+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 137 SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred CHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 2222211 10 123689999999999999999998753
No 113
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.80 E-value=1.3e-18 Score=155.65 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=100.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe---CCceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~---~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..+|+++|.+|||||||++++...... ...+..+.......+.. .+..+.+|||||...+..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------------- 67 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP------------- 67 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHH-------------
Confidence 458999999999999999999876532 22322222222222222 345689999999854221
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESP 316 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~ 316 (381)
.+..++..+|++++|+|++++.+..+ ..++..+... ..++|+++|+||+|+.
T Consensus 68 -------------------------~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 68 -------------------------LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred -------------------------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 23345788999999999987533222 2233333221 2379999999999986
Q ss_pred CcccchhHH-Hh---h----CCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 317 RKGIMQVSE-FW---S----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 317 ~~~~~~~~~-~~---~----~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.....+... .. . .+.+++++||++|+|+++++++|.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~ 171 (183)
T cd04152 123 NALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILK 171 (183)
T ss_pred ccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHH
Confidence 432111111 11 1 12467899999999999999999988754
No 114
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.80 E-value=1.1e-18 Score=151.70 Aligned_cols=147 Identities=19% Similarity=0.223 Sum_probs=96.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe-CCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
+|+++|.+|||||||++++.+...... .+ |.......+.. .+..+.+|||||.....
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~--~~--t~~~~~~~~~~~~~~~l~i~D~~G~~~~~------------------ 58 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT--IP--TVGFNVEMLQLEKHLSLTVWDVGGQEKMR------------------ 58 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc--cC--ccCcceEEEEeCCceEEEEEECCCCHhHH------------------
Confidence 478999999999999999998864322 22 22222222333 24578999999985421
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHH-hCCCCeEEEEEeCccCCCccc
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
.....++..+|++++|+|++++.+... .++...++. ...+.|+++|+||+|+.....
T Consensus 59 --------------------~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 118 (160)
T cd04156 59 --------------------TVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT 118 (160)
T ss_pred --------------------HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC
Confidence 133356788999999999987543222 223333332 124899999999999864321
Q ss_pred chhHH-H---h----hCCCceEEEecCCCCCHHHHHHHHHH
Q 016883 321 MQVSE-F---W----SLGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 321 ~~~~~-~---~----~~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
..... . . ..+++++++||++|+|+++++++|.+
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 119 AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 11111 1 1 12346899999999999999999864
No 115
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=1.8e-18 Score=154.45 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=106.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||++++.+... ...+.+|........+.+++. .+.+|||+|...+...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~-------------- 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNV-------------- 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhc--------------
Confidence 4899999999999999999998753 233333332222223444443 4679999998654331
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCc-
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK- 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~- 318 (381)
...++..+|++++|+|.+++.+... ..|+..+++...+.|+++|+||+|+.+.
T Consensus 66 ------------------------~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~ 121 (178)
T cd04131 66 ------------------------RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDL 121 (178)
T ss_pred ------------------------chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcCh
Confidence 1245689999999999998766665 3577777776668999999999998541
Q ss_pred ---------c---cc--hhHHH-hhCCC-ceEEEecCCCCC-HHHHHHHHHHH
Q 016883 319 ---------G---IM--QVSEF-WSLGF-SPLPISAISGTG-TGELLDLVCSE 354 (381)
Q Consensus 319 ---------~---~~--~~~~~-~~~~~-~~~~vSA~~g~g-i~~l~~~i~~~ 354 (381)
. .. +..++ ...+. +++++||++|+| ++++|..+.+.
T Consensus 122 ~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 122 STLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred hHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 0 11 11111 23564 789999999995 99999998874
No 116
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.79 E-value=3.8e-18 Score=145.58 Aligned_cols=155 Identities=29% Similarity=0.405 Sum_probs=114.6
Q ss_pred EEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC-CceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCC
Q 016883 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (381)
Q Consensus 168 l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (381)
++|++|+|||||+|++++......+..+++|........... +..+.+|||||+.+........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~--------------- 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER--------------- 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH---------------
Confidence 579999999999999998875556667777766665555444 6679999999998755432210
Q ss_pred chhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH--
Q 016883 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-- 324 (381)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~-- 324 (381)
...+...+..+|++++|+|+..+.......+....... +.|+++|+||+|+.........
T Consensus 66 ----------------~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~--~~~~ivv~nK~D~~~~~~~~~~~~ 127 (163)
T cd00880 66 ----------------EELARRVLERADLILFVVDADLRADEEEEKLLELLRER--GKPVLLVLNKIDLLPEEEEEELLE 127 (163)
T ss_pred ----------------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCeEEEEEEccccCChhhHHHHHH
Confidence 12344566889999999999987777665544444444 8999999999999875443332
Q ss_pred -----HHhhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 325 -----EFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 325 -----~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.....+.+++++||+++.|++++++++.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 128 LRLLILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred HHHhhcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 1123456899999999999999999998753
No 117
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.79 E-value=2e-18 Score=154.64 Aligned_cols=153 Identities=21% Similarity=0.234 Sum_probs=102.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|.+|||||||++++...... ...| |.......+...+..+.+|||||.....
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~--T~~~~~~~~~~~~~~~~l~D~~G~~~~~----------------- 75 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV--TTIP--TIGFNVETVEYKNLKFTMWDVGGQDKLR----------------- 75 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--ccccceEEEEECCEEEEEEECCCCHhHH-----------------
Confidence 458999999999999999999765432 2122 2223333455667789999999985422
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChh--HHHHHHHHHH-hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ivV~NK~Dl~~~~ 319 (381)
..+..++..+|++|+|+|+++..+.. ..++...+.. ...+.|+++|+||+|+....
T Consensus 76 ---------------------~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 134 (182)
T PTZ00133 76 ---------------------PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM 134 (182)
T ss_pred ---------------------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC
Confidence 13446678999999999998643222 2233333332 22468999999999986532
Q ss_pred cchh-HHHhh------CCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 320 IMQV-SEFWS------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 320 ~~~~-~~~~~------~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.... ..... ..+.++++||++|.|+++++++|.+.+.+
T Consensus 135 ~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 135 STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHH
Confidence 2111 11111 12356789999999999999999987764
No 118
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.79 E-value=1.5e-18 Score=155.52 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=107.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||++++..... ...+..|........+..++. .+.+|||+|...+..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~-------------- 68 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-------------- 68 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHh--------------
Confidence 55899999999999999999998753 233333332222223444444 478999999865332
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|.+++.+... ..|+..+++...+.|+++|+||+|+...
T Consensus 69 ------------------------~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~ 124 (182)
T cd04172 69 ------------------------VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 124 (182)
T ss_pred ------------------------hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcC
Confidence 22246789999999999998766655 3577777776668999999999998541
Q ss_pred ----------c---cc--hhHHH-hhCCC-ceEEEecCCCCC-HHHHHHHHHHH
Q 016883 319 ----------G---IM--QVSEF-WSLGF-SPLPISAISGTG-TGELLDLVCSE 354 (381)
Q Consensus 319 ----------~---~~--~~~~~-~~~~~-~~~~vSA~~g~g-i~~l~~~i~~~ 354 (381)
. .. +..++ ...+. +++++||++|+| ++++|+.+.+.
T Consensus 125 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 125 LTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred hhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 0 11 11111 23564 899999999998 99999998874
No 119
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.79 E-value=2.3e-18 Score=151.84 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=103.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCce--EEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|++|+|||||++++..... ...+.++........+..++.. +.+|||||.......+.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------- 66 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP------------- 66 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccccc-------------
Confidence 789999999999999999998763 2223333332222234444443 67999999876544222
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCCccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
.++..+|++++|+|..++-+..+. .|...+.....+.|+++|+||+|+.+...
T Consensus 67 -------------------------~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~ 121 (174)
T cd04135 67 -------------------------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPK 121 (174)
T ss_pred -------------------------ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChh
Confidence 345789999999999876554442 45666665556899999999999865321
Q ss_pred ch---------------hHH-HhhCCC-ceEEEecCCCCCHHHHHHHHHHHh
Q 016883 321 MQ---------------VSE-FWSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 321 ~~---------------~~~-~~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.. ... ....+. +++++||++|.|++++++.+.+.+
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 122 TLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 10 001 122343 689999999999999999988754
No 120
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.79 E-value=2.4e-18 Score=151.91 Aligned_cols=152 Identities=17% Similarity=0.169 Sum_probs=102.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|++|||||||++++.+.... ..+.++........+.+++. .+.+|||||.......+.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~------------ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP------------ 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccc------------
Confidence 38999999999999999999987532 22332332222233444444 468999999865432211
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.++..+|++++|+|.++..+..+ ..|...+++...+.|+++|+||+|+....
T Consensus 68 --------------------------~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (175)
T cd01870 68 --------------------------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121 (175)
T ss_pred --------------------------cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccCh
Confidence 24578999999999986543333 23555666555689999999999986532
Q ss_pred cch---------------hHHH-hhCC-CceEEEecCCCCCHHHHHHHHHHHh
Q 016883 320 IMQ---------------VSEF-WSLG-FSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 320 ~~~---------------~~~~-~~~~-~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
... .... ...+ .+++++||++|.|+++++++|.+.+
T Consensus 122 ~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 122 HTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred hhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 110 0011 1123 4789999999999999999998654
No 121
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=2e-18 Score=151.65 Aligned_cols=151 Identities=19% Similarity=0.097 Sum_probs=103.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe--CCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|||||||+|++...... ...+.+.. ........ .+..+.+|||||......
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------------- 62 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVLP-EITIPADVTPERVPTTIVDTSSRPQDRA---------------- 62 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--ccCCCccc-ceEeeeeecCCeEEEEEEeCCCchhhhH----------------
Confidence 7899999999999999999987642 22332221 11111222 344678999999864221
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
.+..++..+|++++|+|++++.+... ..|+..++....+.|+++|+||+|+.+...
T Consensus 63 ----------------------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 63 ----------------------NLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred ----------------------HHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc
Confidence 23345688999999999987665555 246666665445899999999999976443
Q ss_pred c----hhHHH--hh-CC-CceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 321 M----QVSEF--WS-LG-FSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 321 ~----~~~~~--~~-~~-~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
. +.... .. .+ .+++++||++|.|++++++.+.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~ 164 (166)
T cd01893 121 QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVL 164 (166)
T ss_pred hhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhc
Confidence 1 11111 11 12 37899999999999999999988764
No 122
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.79 E-value=3.6e-18 Score=149.46 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=102.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|++|+|||||++++...... ....+..+.+.....+..++ ..+.+|||||......
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~---------------- 64 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT---------------- 64 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh----------------
Confidence 7899999999999999999987642 11122122222223344444 3567999999764322
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~~ 320 (381)
....++..+|++++|+|.++.-+... ..|+..+.... .+.|+++|+||+|+.....
T Consensus 65 ----------------------~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~ 122 (161)
T cd04117 65 ----------------------ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQ 122 (161)
T ss_pred ----------------------hHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC
Confidence 22345678999999999987544443 34555555433 3689999999999865432
Q ss_pred c---hhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 321 M---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 321 ~---~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
. +...+ ...+.+++++||++|.|++++|.+|.+.
T Consensus 123 v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 123 VGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 1 11111 2356789999999999999999999764
No 123
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.3e-18 Score=153.08 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=119.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
...++|+++|.+|||||.|+.++....+.. +.......+.....+.++|. ++++|||.|+++++.
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e-~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrt------------ 73 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTE-SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRT------------ 73 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcch-hhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhh------------
Confidence 346799999999999999999999886421 11112234444444555554 578999999987653
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESP 316 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~ 316 (381)
.+..++++||+||+|+|.+...+... ..|+..+.+.. .++|.++|+||+|+.
T Consensus 74 --------------------------it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~ 127 (205)
T KOG0084|consen 74 --------------------------ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLT 127 (205)
T ss_pred --------------------------hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccH
Confidence 56688999999999999998655555 45777777754 467999999999998
Q ss_pred CcccchhHH---H-hhCCCc-eEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 317 RKGIMQVSE---F-WSLGFS-PLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 317 ~~~~~~~~~---~-~~~~~~-~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+........ + ...+.+ ++++|||++.|+++.|..|...++...
T Consensus 128 ~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 128 EKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred hheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 765433322 2 346777 899999999999999999988877554
No 124
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.79 E-value=1.3e-18 Score=152.56 Aligned_cols=150 Identities=16% Similarity=0.152 Sum_probs=102.9
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||+++|.+.... .....+..+.........+ ..+.+|||||+.+......
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~------------ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRP------------ 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccch------------
Confidence 37899999999999999999987641 2222233222222333333 3578999999876432111
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
..+..+|++++|+|++++.+... ..++..+.....+.|+++|+||+|+....
T Consensus 67 --------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 67 --------------------------LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDE 120 (171)
T ss_pred --------------------------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhch
Confidence 34478999999999987544333 44666666655579999999999987654
Q ss_pred cch--------------hHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHH
Q 016883 320 IMQ--------------VSEF-WSLGF-SPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 320 ~~~--------------~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
... .... ...+. +++++||++|.|+++++++|.+
T Consensus 121 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 121 NTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 221 1111 23344 8999999999999999999875
No 125
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.2e-18 Score=152.67 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=116.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++++++|.+|||||||+-++..+.+... ..+.+........+..++ .++.||||.|++++....
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~-~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~sla------------ 71 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHEN-IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLA------------ 71 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccc-cccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccc------------
Confidence 46999999999999999999998764221 122112222222334444 457799999999865533
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
-.|+++|+++|+|+|.++..+... +.|+..+++.. +++-+.+|+||+|+...
T Consensus 72 --------------------------pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 72 --------------------------PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER 125 (200)
T ss_pred --------------------------cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc
Confidence 357899999999999998666655 67888888865 34556679999999884
Q ss_pred ccchhH---H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcccc
Q 016883 319 GIMQVS---E-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVEVC 361 (381)
Q Consensus 319 ~~~~~~---~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~~ 361 (381)
...... . ....+..++++|||+|.|++++|..|.+.+......
T Consensus 126 R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 126 REVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred ccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcccc
Confidence 433222 1 234688999999999999999999999998865543
No 126
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.79 E-value=3.4e-18 Score=150.78 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=105.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|++|||||||+++++...... ...+..+.+.....+.+++ ..+.+|||||..+...
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------- 66 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPE-RTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK-------------- 66 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-ccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH--------------
Confidence 3589999999999999999998765321 1111111222222344444 4678999999864321
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~ 317 (381)
.....++..+|++++|+|++++.+..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 67 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 67 -----------------------SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred -----------------------hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 012345678999999999998665555 34565555532 4699999999999865
Q ss_pred cccch---hHHH-hhCCCceEEEecCC---CCCHHHHHHHHHHHhh
Q 016883 318 KGIMQ---VSEF-WSLGFSPLPISAIS---GTGTGELLDLVCSELK 356 (381)
Q Consensus 318 ~~~~~---~~~~-~~~~~~~~~vSA~~---g~gi~~l~~~i~~~l~ 356 (381)
..... ...+ ...+.+++++||++ +.|+++++..+.+.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 124 QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence 43221 1111 23467899999999 8999999999887664
No 127
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.79 E-value=3e-18 Score=148.73 Aligned_cols=147 Identities=21% Similarity=0.213 Sum_probs=101.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|.+|||||||++++++....... .|.......+.+.+..+.+|||||......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------------------ 58 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTI----PTIGFNVETVEYKNVSFTVWDVGGQDKIRP------------------ 58 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCC----CCcCcceEEEEECCEEEEEEECCCChhhHH------------------
Confidence 5799999999999999999988632221 222233334556677899999999864321
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCcccc
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
....++..+|++++|+|++++.+... ..++..+... ..+.|+++|+||+|+......
T Consensus 59 --------------------~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 118 (158)
T cd00878 59 --------------------LWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV 118 (158)
T ss_pred --------------------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH
Confidence 23356678999999999997533222 2333333221 247999999999999764422
Q ss_pred hhHHH-------hhCCCceEEEecCCCCCHHHHHHHHHH
Q 016883 322 QVSEF-------WSLGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 322 ~~~~~-------~~~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
..... ....++++++||++|.|+++++++|..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 119 SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 22211 123457999999999999999999865
No 128
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=2.7e-18 Score=159.48 Aligned_cols=155 Identities=16% Similarity=0.077 Sum_probs=108.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||++++....+ ...+.+|........+..++. .+.||||+|...+..
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~-------------- 76 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDN-------------- 76 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC--CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHH--------------
Confidence 56999999999999999999998753 233333322222223344443 578999999865322
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|.++..+... ..|+..+.+...+.|+++|+||+|+...
T Consensus 77 ------------------------~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~ 132 (232)
T cd04174 77 ------------------------VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTD 132 (232)
T ss_pred ------------------------HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 23356789999999999998766654 3577777765568899999999998541
Q ss_pred ------------c-cc--hhHHH-hhCCC-ceEEEecCCCC-CHHHHHHHHHHHhhh
Q 016883 319 ------------G-IM--QVSEF-WSLGF-SPLPISAISGT-GTGELLDLVCSELKK 357 (381)
Q Consensus 319 ------------~-~~--~~~~~-~~~~~-~~~~vSA~~g~-gi~~l~~~i~~~l~~ 357 (381)
. .. +...+ ...+. +++++||++|+ |++++|..+...+.+
T Consensus 133 ~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 133 LSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred cchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence 1 11 11111 23566 58999999998 899999998876654
No 129
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.79 E-value=3.7e-18 Score=151.09 Aligned_cols=153 Identities=18% Similarity=0.099 Sum_probs=103.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcc-cccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt-~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
+|+++|.+|||||||++++.+... ...+..|. .......+..++ ..+.+|||||...+..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF--DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC--------------- 64 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh---------------
Confidence 789999999999999999998753 22332222 222223344444 3578999999865322
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-C-CCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-Y-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~-~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|+++..+... ..|+..+.+. . ...|+++|+||+|+.+.
T Consensus 65 -----------------------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 65 -----------------------IASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred -----------------------hHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 23356789999999999987433322 4566655443 2 24679999999998654
Q ss_pred ccc---hh--HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 GIM---QV--SE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~~---~~--~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
... +. .. ....+.+++++||++|.|++++++.|.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 122 AQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred ccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 321 11 11 12346688999999999999999999887643
No 130
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.79 E-value=3e-18 Score=151.60 Aligned_cols=149 Identities=17% Similarity=0.161 Sum_probs=104.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+++++|.+|+|||||++++..... ...+..|+.+.....+..++. .+.+|||||.......+.
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRP------------ 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccc------------
Confidence 3789999999999999999987653 334444544333333444443 567999999966443222
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.++..+|++++|+|.+++.+... ..|+..+.....+.|+++|+||+|+....
T Consensus 67 --------------------------~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 120 (173)
T cd04130 67 --------------------------LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120 (173)
T ss_pred --------------------------cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccCh
Confidence 35678999999999998655544 34676676654579999999999986431
Q ss_pred ------------cch---hHHH-hhCCC-ceEEEecCCCCCHHHHHHHHH
Q 016883 320 ------------IMQ---VSEF-WSLGF-SPLPISAISGTGTGELLDLVC 352 (381)
Q Consensus 320 ------------~~~---~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~ 352 (381)
... ...+ ...+. +++++||++|.|++++++.+.
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred hHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 111 1111 22344 899999999999999998865
No 131
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.79 E-value=4.2e-18 Score=149.78 Aligned_cols=152 Identities=14% Similarity=0.138 Sum_probs=103.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
++|+++|.+|||||||++++.+... ...+..++.......+..++ ..+.+|||||+.++...+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------- 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMR------------- 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhh-------------
Confidence 4799999999999999999997753 22233333322223334444 356899999987654322
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
..++..++++++|+|.+++.+... ..+...+.+. ..+.|+++|+||+|+...
T Consensus 67 -------------------------~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 67 -------------------------ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred -------------------------HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence 245578999999999987544433 3344444432 247999999999998754
Q ss_pred ccchh---HHH-hhCC-CceEEEecCCCCCHHHHHHHHHHHh
Q 016883 319 GIMQV---SEF-WSLG-FSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 319 ~~~~~---~~~-~~~~-~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
..... ... ...+ .+++++||++|.|++++++++...+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 122 RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 32211 111 2334 6899999999999999999998755
No 132
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.79 E-value=3.6e-18 Score=157.56 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=102.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|.+|||||||++++....+.. .. .|.........+....+.+|||||...+..
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~~--~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~------------------ 59 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--TV--STVGGAFYLKQWGPYNISIWDTAGREQFHG------------------ 59 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CC--CccceEEEEEEeeEEEEEEEeCCCcccchh------------------
Confidence 78999999999999999999876432 12 222222222333455688999999865432
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH-HHHHHHHH-hCCCCeEEEEEeCccCCCc----
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRK---- 318 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ivV~NK~Dl~~~---- 318 (381)
....++..+|++|+|+|+++..+..+. .++..+.+ ...+.|+++|+||+|+...
T Consensus 60 --------------------l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~ 119 (220)
T cd04126 60 --------------------LGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALA 119 (220)
T ss_pred --------------------hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccc
Confidence 223457899999999999986555442 23333333 2346899999999999651
Q ss_pred ---------------ccc---hhHHH-hhCC--------------CceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 ---------------GIM---QVSEF-WSLG--------------FSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ---------------~~~---~~~~~-~~~~--------------~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
... +...+ ...+ .+++++||++|.||+++|..+.+.+..
T Consensus 120 ~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 120 GQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 111 11111 1112 578999999999999999999987654
No 133
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.79 E-value=2.5e-18 Score=148.55 Aligned_cols=150 Identities=19% Similarity=0.209 Sum_probs=105.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|++|||||||++++++.. ......+++.+.....+..++ ..+.+|||||.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------------- 61 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS----------------- 61 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-----------------
Confidence 57999999999999999999775 344455555544444455553 457899999986421
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~~~ 319 (381)
......+..+|++++|+|.+++.+..+ ..+...+.... .+.|+++|+||+|+....
T Consensus 62 ---------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 120 (160)
T cd00876 62 ---------------------AMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER 120 (160)
T ss_pred ---------------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc
Confidence 123355678999999999987544333 33444444433 379999999999997632
Q ss_pred cc---hhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 320 IM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 320 ~~---~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
.. ....+ ...+.+++++||++|.|+++++++|.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 121 QVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred eecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 21 11112 2345789999999999999999999875
No 134
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.79 E-value=1.8e-18 Score=148.32 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=100.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC--CceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|+|||||+|++.+...... ..+..+.+.....+... ...+.+|||||.....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------------- 63 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR----------------- 63 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH-----------------
Confidence 789999999999999999998764322 12212222222223332 3567899999985321
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCcc-
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG- 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~- 319 (381)
.....++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+....
T Consensus 64 ---------------------~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 122 (159)
T cd00154 64 ---------------------SITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQ 122 (159)
T ss_pred ---------------------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccccc
Confidence 234456788999999999987433322 34555555542 469999999999996221
Q ss_pred -cchhHH-H-hhCCCceEEEecCCCCCHHHHHHHHH
Q 016883 320 -IMQVSE-F-WSLGFSPLPISAISGTGTGELLDLVC 352 (381)
Q Consensus 320 -~~~~~~-~-~~~~~~~~~vSA~~g~gi~~l~~~i~ 352 (381)
..+... + ...+.+++++||++|.|+++++++|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 123 VSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 112211 1 23467899999999999999999985
No 135
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.78 E-value=1.7e-18 Score=162.45 Aligned_cols=159 Identities=23% Similarity=0.271 Sum_probs=122.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCce-EEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE-FMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~-~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
...++++|.||+|||||+|+|...+ +.+..+++||..+..+.+.+++.. +.+.|.||+....+++.++
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGl---------- 264 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGL---------- 264 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCccccccccccCcc----------
Confidence 4678999999999999999999987 589999999999999888887765 8999999999988777632
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC---CChhHHH-H---HHHHHHhCCCCeEEEEEeCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LTAADEE-I---ADWLRKNYMDKFIILAVNKCE 314 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~---~~~~~~~-~---~~~l~~~~~~~p~ivV~NK~D 314 (381)
.-.++++++.|+.++||+|.+.+ ...++.+ + ++...+.+..+|.++|+||+|
T Consensus 265 ---------------------G~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD 323 (366)
T KOG1489|consen 265 ---------------------GYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKID 323 (366)
T ss_pred ---------------------cHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccC
Confidence 12667889999999999999875 2222222 2 233344467899999999999
Q ss_pred CCCcccc--hhHHHhhCC-CceEEEecCCCCCHHHHHHHHHHH
Q 016883 315 SPRKGIM--QVSEFWSLG-FSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 315 l~~~~~~--~~~~~~~~~-~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
+.+.+.. ..+. ..+. ..++++||++|+|+.+|++.|.+.
T Consensus 324 ~~eae~~~l~~L~-~~lq~~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 324 LPEAEKNLLSSLA-KRLQNPHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred chhHHHHHHHHHH-HHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence 9643222 1211 2233 349999999999999999988764
No 136
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.78 E-value=4e-18 Score=177.31 Aligned_cols=151 Identities=22% Similarity=0.311 Sum_probs=114.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc-eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
+.++|+++|++|+|||||+++|.+.... ....+++|.+.....+.+++. .+.||||||+.++..
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~-------------- 150 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS-------------- 150 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcchhh--------------
Confidence 4679999999999999999999987643 344566777766666666554 899999999976432
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
.....+..+|++++|+|++++...+..+.+..+... ++|+++++||+|+.....
T Consensus 151 ------------------------~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~--~vPiIVviNKiDl~~~~~ 204 (587)
T TIGR00487 151 ------------------------MRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA--NVPIIVAINKIDKPEANP 204 (587)
T ss_pred ------------------------HHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc--CCCEEEEEECcccccCCH
Confidence 122456789999999999988888887777776655 899999999999965321
Q ss_pred chhHHH----------hhCCCceEEEecCCCCCHHHHHHHHHH
Q 016883 321 MQVSEF----------WSLGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 321 ~~~~~~----------~~~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
...... +....+++++||++|+|++++++++..
T Consensus 205 e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 205 DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 111111 111347899999999999999999864
No 137
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.78 E-value=4.1e-18 Score=181.41 Aligned_cols=154 Identities=21% Similarity=0.264 Sum_probs=118.6
Q ss_pred CCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 160 ~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..+.+.|+++|++|+|||||+++|.+..+ ..+..++.|.+.....+.+++..++||||||+.++..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~------------- 352 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA------------- 352 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc-cccccCceeeeccEEEEEECCEEEEEEECCCCccchh-------------
Confidence 34678999999999999999999988664 2344566777776667777788899999999976532
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.....+..+|++++|+|++++...+..+.+..+... ++|+|+|+||+|+....
T Consensus 353 -------------------------m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~--~vPiIVviNKiDl~~a~ 405 (787)
T PRK05306 353 -------------------------MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA--GVPIIVAINKIDKPGAN 405 (787)
T ss_pred -------------------------HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc--CCcEEEEEECccccccC
Confidence 222456789999999999998888887777777665 89999999999996532
Q ss_pred cc---hhHHH-------hhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 320 IM---QVSEF-------WSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 320 ~~---~~~~~-------~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
.. ..+.. +...++++++||++|+|+++|+++|...
T Consensus 406 ~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 406 PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 11 11110 1123689999999999999999998753
No 138
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=7.1e-18 Score=147.87 Aligned_cols=154 Identities=18% Similarity=0.142 Sum_probs=103.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|++|||||||++++...... ....+..+.+.....+.+.+. .+.+|||||+.....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------------- 71 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS-------------- 71 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHH--------------
Confidence 469999999999999999999865431 112222222333333445553 467899999854221
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+...
T Consensus 72 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 72 ------------------------ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127 (169)
T ss_pred ------------------------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 33456789999999999986543322 24555554432 36899999999998754
Q ss_pred ccc-hh--HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 319 GIM-QV--SEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 319 ~~~-~~--~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
... .. ..+ .....+++++||++|.|+++++++|.+.+
T Consensus 128 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred cccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 321 11 111 22346899999999999999999998754
No 139
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.78 E-value=6.3e-18 Score=150.11 Aligned_cols=156 Identities=22% Similarity=0.163 Sum_probs=106.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|||||||++++.+... .....+++.......+..++. .+.+|||||+.+...
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------------- 64 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI---------------- 64 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHH----------------
Confidence 899999999999999999997653 233333443333334444443 468999999864321
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|.++..+... ..+...+.+.. .+.|+++|+||+|+....
T Consensus 65 ----------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 122 (180)
T cd04137 65 ----------------------LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR 122 (180)
T ss_pred ----------------------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC
Confidence 22245678999999999987543333 23334443322 468999999999987533
Q ss_pred cchh---HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 320 IMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 320 ~~~~---~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
.... .. ....+.+++++||++|.|++++++++.+.+.+...
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 167 (180)
T cd04137 123 QVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKVEN 167 (180)
T ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 2211 11 12345789999999999999999999988776554
No 140
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.78 E-value=7.2e-18 Score=156.97 Aligned_cols=157 Identities=23% Similarity=0.235 Sum_probs=113.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|++|+|||||+|+|++.. ..++.++++|.....+.+.+++..+.+|||||+.+.......
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~-------------- 66 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKG-------------- 66 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchh--------------
Confidence 78999999999999999999876 467788899988888888888999999999998764321110
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChh-----------------------------------
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA----------------------------------- 289 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~----------------------------------- 289 (381)
+..+....++++|++++|+|++++....
T Consensus 67 -----------------~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~ 129 (233)
T cd01896 67 -----------------RGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITS 129 (233)
T ss_pred -----------------HHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEec
Confidence 1124456778999999999987532211
Q ss_pred -------HHHHH-HHHHHh-------------------------CCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEE
Q 016883 290 -------DEEIA-DWLRKN-------------------------YMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPI 336 (381)
Q Consensus 290 -------~~~~~-~~l~~~-------------------------~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~v 336 (381)
+.+.+ ..++++ ...+|+++|+||+|+.+.+..+. +....+++++
T Consensus 130 ~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~---~~~~~~~~~~ 206 (233)
T cd01896 130 TVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL---LARQPNSVVI 206 (233)
T ss_pred cCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH---HhcCCCEEEE
Confidence 11111 111111 13479999999999976544332 2334568999
Q ss_pred ecCCCCCHHHHHHHHHHHhh
Q 016883 337 SAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 337 SA~~g~gi~~l~~~i~~~l~ 356 (381)
||++|.|++++++.+.+.+.
T Consensus 207 SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 207 SAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred cCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999998764
No 141
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.78 E-value=4.5e-18 Score=159.68 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=104.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|||||||+++++..... ..+.+|+.+.....+.+++ ..+.||||+|...+..
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~---------------- 63 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA---------------- 63 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhH----------------
Confidence 7899999999999999999877532 2334444444444455555 3567999999865321
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh----------CCCCeEEEEEe
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN----------YMDKFIILAVN 311 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~----------~~~~p~ivV~N 311 (381)
....++..+|++|+|+|+++..+..+ ..++..+.+. ..+.|+++|+|
T Consensus 64 ----------------------~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgN 121 (247)
T cd04143 64 ----------------------MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGN 121 (247)
T ss_pred ----------------------HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence 11234578999999999997544443 3344444331 24789999999
Q ss_pred CccCCCcccchh---HHHhh--CCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 312 KCESPRKGIMQV---SEFWS--LGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 312 K~Dl~~~~~~~~---~~~~~--~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
|+|+........ ..... .+.+++++||++|.|+++++++|.+...
T Consensus 122 K~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 122 KADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 999975322111 11112 2467999999999999999999998654
No 142
>PLN03110 Rab GTPase; Provisional
Probab=99.78 E-value=8.9e-18 Score=154.54 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=109.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
...+|+++|.+|||||||++++.+.... ....+..+.+.....+.+++ ..+.+|||||..++..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~------------- 76 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRA------------- 76 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHH-------------
Confidence 3569999999999999999999987642 12222222232233344444 3678999999754221
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|.++..+... ..|+..+.... .+.|+++|+||+|+..
T Consensus 77 -------------------------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 77 -------------------------ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred -------------------------HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc
Confidence 33456788999999999987655444 34666665543 3799999999999865
Q ss_pred cccchh---HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 318 KGIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 318 ~~~~~~---~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
...... ..+ ...+.+++++||++|.|++++++++.+.+.+
T Consensus 132 ~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 132 LRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 332211 111 2356799999999999999999999887754
No 143
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.78 E-value=7.1e-18 Score=151.10 Aligned_cols=154 Identities=15% Similarity=0.142 Sum_probs=103.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcc-cccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt-~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
+|+++|.+|||||||++++...... ..+..|. .+.....+..++. .+.+|||+|...+..
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~--~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~--------------- 64 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFD--EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN--------------- 64 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH---------------
Confidence 7899999999999999999887532 2222222 2222233455553 578999999865432
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc-
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK- 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~- 318 (381)
....++..+|++++|+|.++..+..+ .+|+..+.+.. ...| ++|+||+|+...
T Consensus 65 -----------------------~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~ 120 (182)
T cd04128 65 -----------------------MLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADL 120 (182)
T ss_pred -----------------------hhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccc
Confidence 22246788999999999988655544 34666665532 2456 688999998531
Q ss_pred ---cc---chh-HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 319 ---GI---MQV-SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 319 ---~~---~~~-~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.. .+. ..+ ...+.+++++||++|.|++++++++.+.+.+..
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred cchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 11 111 111 234678999999999999999999998776433
No 144
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.78 E-value=1e-17 Score=179.03 Aligned_cols=159 Identities=23% Similarity=0.264 Sum_probs=119.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCc-hhhhhhhhhhccC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQP-NIMEDLAITTTIG 242 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~-~~~~~~~~~~~~~ 242 (381)
.+|+++|++|||||||+|+|++... .+++++|+|.+...+.+..++..+.++||||+.+...... ...+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~--------- 73 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLD--------- 73 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHH---------
Confidence 4899999999999999999999864 7899999999988888888888999999999987543211 0000
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHH--hccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
++.+..+ ...+|++++|+|+++.. .+..+...+.+. ++|+++|+||+|+.++..
T Consensus 74 --------------------E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~--giPvIvVlNK~Dl~~~~~ 129 (772)
T PRK09554 74 --------------------EQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLEL--GIPCIVALNMLDIAEKQN 129 (772)
T ss_pred --------------------HHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHc--CCCEEEEEEchhhhhccC
Confidence 1112223 24799999999998632 233455566665 899999999999875322
Q ss_pred -chhH-H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 321 -MQVS-E-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 321 -~~~~-~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.... . ....+.|++++||++|+|++++++.+.+..+
T Consensus 130 i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 130 IRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred cHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhhh
Confidence 1111 1 1346789999999999999999999988764
No 145
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.78 E-value=6.5e-18 Score=154.91 Aligned_cols=157 Identities=21% Similarity=0.252 Sum_probs=106.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC-C--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~-~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
++|+++|.+|||||||++++++....... .+..+.+.....+... + ..+.+|||||......
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-------------- 67 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS-------------- 67 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHH--------------
Confidence 58999999999999999999987643221 2222222222233332 3 3578999999854321
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|.+++.+..+ .+|+..+.+.. ...|+++|+||+|+..
T Consensus 68 ------------------------~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 68 ------------------------ITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred ------------------------HHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 23456789999999999987544444 34555554432 2567899999999976
Q ss_pred cccch--h-HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 318 KGIMQ--V-SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~~~~~--~-~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
..... . ..+ ...+.+++++||++|+|+++++++|.+.+.+..
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~ 169 (211)
T cd04111 124 QRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERI 169 (211)
T ss_pred ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 42211 1 111 235678999999999999999999998776543
No 146
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=6.1e-18 Score=173.36 Aligned_cols=157 Identities=29% Similarity=0.387 Sum_probs=124.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
.+|+++|+||||||||+|+|+|.+ ..++++||+|.+...+.+...+..+.++|+||.........+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D------------- 69 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED------------- 69 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch-------------
Confidence 379999999999999999999987 589999999999999999999999999999999876553321
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhc--cccEEEEEEeCCCCCChhHHH--HHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIE--ESCVIIFLVDGQAGLTAADEE--IADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~d~ii~VvD~~~~~~~~~~~--~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
++.+.+++. .+|+++-|+|+++ .++. +.-++.+. ++|+++++|++|..++.
T Consensus 70 -------------------E~Var~~ll~~~~D~ivnVvDAtn----LeRnLyltlQLlE~--g~p~ilaLNm~D~A~~~ 124 (653)
T COG0370 70 -------------------EKVARDFLLEGKPDLIVNVVDATN----LERNLYLTLQLLEL--GIPMILALNMIDEAKKR 124 (653)
T ss_pred -------------------HHHHHHHHhcCCCCEEEEEcccch----HHHHHHHHHHHHHc--CCCeEEEeccHhhHHhc
Confidence 234555543 5899999999984 3333 33445555 99999999999987653
Q ss_pred cc--hhHH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 320 IM--QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 320 ~~--~~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
-. +..+ ...++.|++++||++|+|+++++..+.+..+...
T Consensus 125 Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 125 GIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred CCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccccc
Confidence 21 2222 2567999999999999999999999987665444
No 147
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.77 E-value=9.8e-18 Score=148.15 Aligned_cols=154 Identities=17% Similarity=0.166 Sum_probs=103.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCccccc-ceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDR-MYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~-~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
.++|+++|.+|||||||++++++.... +..+.+|+... ....+.+++ ..+.+|||+|.......
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~------------ 70 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL------------ 70 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc------------
Confidence 569999999999999999999987642 13344443222 222344455 35679999998764332
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
...++..+|++++|+|++++.+... .+++..+.. ..+.|+++|+||+|+.+.
T Consensus 71 --------------------------~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 71 --------------------------NDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM-LGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred --------------------------chhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc-CCCCeEEEEEEccccccc
Confidence 2245689999999999987533222 233433322 137999999999998653
Q ss_pred cc---chhHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 319 GI---MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~~---~~~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.. .+...+ ...+. .++++||++|.|++++++.+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 124 QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred ccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 21 111122 23444 4699999999999999999988754
No 148
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.77 E-value=4e-18 Score=149.32 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=97.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|.+|+|||||+|+|.+... .. ..|.. +.+.+. .+|||||+..... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~---~~~~~-----v~~~~~--~~iDtpG~~~~~~---~-------------- 53 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LA---RKTQA-----VEFNDK--GDIDTPGEYFSHP---R-------------- 53 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cC---ccceE-----EEECCC--CcccCCccccCCH---H--------------
Confidence 799999999999999999987642 11 11111 122222 2799999853221 0
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~ 324 (381)
+.+.....+..+|++++|+|++.+.+....++... ..++|+++++||+|+.........
T Consensus 54 -----------------~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~~~~~~~ 112 (158)
T PRK15467 54 -----------------WYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI----GVSKRQIAVISKTDMPDADVAATR 112 (158)
T ss_pred -----------------HHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc----cCCCCeEEEEEccccCcccHHHHH
Confidence 01223345689999999999987654443333221 237899999999998654332222
Q ss_pred HH-hhCC--CceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 325 EF-WSLG--FSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 325 ~~-~~~~--~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
.+ ...+ .|++++||++|+|++++++++.+.+.....
T Consensus 113 ~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 151 (158)
T PRK15467 113 KLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEA 151 (158)
T ss_pred HHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhhhc
Confidence 21 2334 489999999999999999999998865443
No 149
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.77 E-value=7.5e-18 Score=158.69 Aligned_cols=166 Identities=27% Similarity=0.281 Sum_probs=127.8
Q ss_pred CCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhh
Q 016883 156 GNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDL 235 (381)
Q Consensus 156 ~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~ 235 (381)
..+...+..+|+++|+|+||||||+|.|++.+ ..+..+++||.....+.+.++|..++++|+||+..+.....+.
T Consensus 56 f~V~KsGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~gr---- 130 (365)
T COG1163 56 FAVKKSGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGR---- 130 (365)
T ss_pred ceEeccCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCC----
Confidence 44567788999999999999999999999987 6899999999999999999999999999999998876644421
Q ss_pred hhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC-----------------------------
Q 016883 236 AITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL----------------------------- 286 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~----------------------------- 286 (381)
.+++....++||+|++|+|+..+.
T Consensus 131 ---------------------------G~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk 183 (365)
T COG1163 131 ---------------------------GRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKK 183 (365)
T ss_pred ---------------------------cceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEe
Confidence 124556678999999999987532
Q ss_pred -------------ChhHHHHHHH-HHHh-------------------------CCCCeEEEEEeCccCCCcccchhHHHh
Q 016883 287 -------------TAADEEIADW-LRKN-------------------------YMDKFIILAVNKCESPRKGIMQVSEFW 327 (381)
Q Consensus 287 -------------~~~~~~~~~~-l~~~-------------------------~~~~p~ivV~NK~Dl~~~~~~~~~~~~ 327 (381)
+..+.+.++. +.++ ...+|.++|+||+|+...+......
T Consensus 184 ~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~-- 261 (365)
T COG1163 184 ESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLA-- 261 (365)
T ss_pred ccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHH--
Confidence 2122222222 2221 1468899999999998844433332
Q ss_pred hCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 328 SLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 328 ~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.....+++||+.|.|+++|++.|++.+.
T Consensus 262 -~~~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 262 -RKPNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred -hccceEEEecccCCCHHHHHHHHHHhhC
Confidence 2238899999999999999999999765
No 150
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.77 E-value=4.3e-18 Score=150.05 Aligned_cols=147 Identities=23% Similarity=0.166 Sum_probs=100.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|.+|||||||++++.+....... .|.......+...+..+.+|||||.....
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~----~t~g~~~~~~~~~~~~~~i~D~~G~~~~~------------------- 57 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVA----PTVGFTPTKLRLDKYEVCIFDLGGGANFR------------------- 57 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCcccc----CcccceEEEEEECCEEEEEEECCCcHHHH-------------------
Confidence 4789999999999999999976321122 22223334456677889999999975422
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCcccc
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
.....++..+|++++|+|+++..+..+ ..++..+... ..++|+++|+||+|+......
T Consensus 58 -------------------~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~ 118 (167)
T cd04161 58 -------------------GIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG 118 (167)
T ss_pred -------------------HHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH
Confidence 234467889999999999987543333 3344444332 247999999999999764422
Q ss_pred hh-HH---Hh------hCCCceEEEecCCC------CCHHHHHHHHHH
Q 016883 322 QV-SE---FW------SLGFSPLPISAISG------TGTGELLDLVCS 353 (381)
Q Consensus 322 ~~-~~---~~------~~~~~~~~vSA~~g------~gi~~l~~~i~~ 353 (381)
.. .. .. ...++++++||++| .|+++.++||.+
T Consensus 119 ~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 119 ADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 11 11 11 11246788999998 899999999964
No 151
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.77 E-value=3.8e-18 Score=155.19 Aligned_cols=150 Identities=17% Similarity=0.075 Sum_probs=105.1
Q ss_pred EcCCCCChhHHHHHHhCCCcccccCCCCcc-cccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCC
Q 016883 169 VGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (381)
Q Consensus 169 ~G~~gvGKSSLin~L~~~~~~~~~~~~~tt-~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (381)
+|.+|||||||+++++.... ...+..|. .......+.+++ ..+.||||||...+..
T Consensus 1 vG~~~vGKTsLi~r~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~------------------- 59 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG------------------- 59 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh-------------------
Confidence 59999999999999997643 22222221 122222233333 4678999999976433
Q ss_pred CchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcccch-h
Q 016883 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-V 323 (381)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~-~ 323 (381)
....++..+|++|+|+|++++.+... ..|+..+.+...+.|+++|+||+|+....... .
T Consensus 60 -------------------l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~ 120 (200)
T smart00176 60 -------------------LRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKS 120 (200)
T ss_pred -------------------hhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHH
Confidence 23357789999999999998655544 35777777655689999999999986432211 1
Q ss_pred HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 324 SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 324 ~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
..+ ...+++++++||++|+||+++|++|.+.+.+.
T Consensus 121 ~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 121 ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 121 34577899999999999999999999877654
No 152
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=8.2e-18 Score=149.91 Aligned_cols=160 Identities=16% Similarity=0.133 Sum_probs=120.7
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhh
Q 016883 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLA 236 (381)
Q Consensus 159 ~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~ 236 (381)
+....++|+++|.+|||||+++-++....+ ..+.......+.....+..++. .+++|||.|+.++..
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f-~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~t---------- 76 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSF-NTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRT---------- 76 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccC-cCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHH----------
Confidence 345577999999999999999999998753 2222222223333444555554 468999999987543
Q ss_pred hhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCC-CCeEEEEEeCcc
Q 016883 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYM-DKFIILAVNKCE 314 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~-~~p~ivV~NK~D 314 (381)
.+..|+..|+.+++|+|..+..+..+ ..|++.+.+... ++|.++|+||+|
T Consensus 77 ----------------------------i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D 128 (207)
T KOG0078|consen 77 ----------------------------ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCD 128 (207)
T ss_pred ----------------------------HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccc
Confidence 66788999999999999998665555 558888888654 899999999999
Q ss_pred CCCcccchhHH----HhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 315 SPRKGIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 315 l~~~~~~~~~~----~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+..+....... ....+++++++|||+|.||++.|-.|.+.+.+
T Consensus 129 ~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 129 LEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred ccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 98754333221 24568999999999999999999999887774
No 153
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.77 E-value=9.5e-18 Score=154.93 Aligned_cols=152 Identities=20% Similarity=0.202 Sum_probs=102.6
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCccc-ccceeeEEeC--CceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTR-DRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~-~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.+|+++|.+|||||||++++...... ...+..+.. +.....+.++ ...+.+|||||... .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~-------------- 63 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--W-------------- 63 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--H--------------
Confidence 37999999999999999999866532 122221211 2222233433 34578999999861 0
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhc-cccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIE-ESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESP 316 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~ 316 (381)
....++. .+|++++|+|++++.+... .+++..+.+. ..+.|+++|+||+|+.
T Consensus 64 ------------------------~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 64 ------------------------TEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred ------------------------HHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 0112334 8999999999998644433 3455555553 2479999999999987
Q ss_pred CcccchhH---HH-hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 317 RKGIMQVS---EF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 317 ~~~~~~~~---~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
........ .+ ...+.+++++||++|.|++++++++.+.+.
T Consensus 120 ~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 120 RSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 64322111 11 234678999999999999999999998875
No 154
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.77 E-value=1.5e-17 Score=146.45 Aligned_cols=149 Identities=18% Similarity=0.248 Sum_probs=99.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|++|||||||++++.+........ |.......+...+..+.+|||||.....
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~----t~g~~~~~i~~~~~~~~~~D~~G~~~~~----------------- 72 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITP----TQGFNIKTVQSDGFKLNVWDIGGQRAIR----------------- 72 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCC----CCCcceEEEEECCEEEEEEECCCCHHHH-----------------
Confidence 5699999999999999999999875432222 2222233455667788999999975321
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChh--HHHHHHHHHH-hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.....+++.+|++++|+|+.+..... ...+...+.. ...++|+++++||+|+....
T Consensus 73 ---------------------~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 131 (173)
T cd04155 73 ---------------------PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA 131 (173)
T ss_pred ---------------------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC
Confidence 12335568899999999998643222 1222222222 12379999999999987643
Q ss_pred cchhH-HHhh------CCCceEEEecCCCCCHHHHHHHHHH
Q 016883 320 IMQVS-EFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 320 ~~~~~-~~~~------~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
..+.. .... ..++++++||++|+|++++++||.+
T Consensus 132 ~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 132 PAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 22211 1111 1225789999999999999999975
No 155
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.77 E-value=8.8e-18 Score=147.69 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=100.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||++++....... ...+..+.......+..++. .+.+|||||......
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------------- 69 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS-------------- 69 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCc-CcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH--------------
Confidence 4599999999999999999999765321 11222222222223344443 467999999754322
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-----CCCeEEEEEeCcc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-----MDKFIILAVNKCE 314 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-----~~~p~ivV~NK~D 314 (381)
....+++.+|++++|+|.+++.+... ..|...+.... .+.|+++|+||+|
T Consensus 70 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 125 (170)
T cd04116 70 ------------------------LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKND 125 (170)
T ss_pred ------------------------hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcc
Confidence 23356788999999999987544333 23444443321 3689999999999
Q ss_pred CCCcccc--hhHHH-hhCC-CceEEEecCCCCCHHHHHHHHHHH
Q 016883 315 SPRKGIM--QVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 315 l~~~~~~--~~~~~-~~~~-~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
+...... +..++ ...+ .+++++||++|.|++++++++.+.
T Consensus 126 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 126 IPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 8643221 11122 2334 478999999999999999998764
No 156
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.76 E-value=1.1e-17 Score=147.11 Aligned_cols=147 Identities=16% Similarity=0.111 Sum_probs=100.4
Q ss_pred EEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCC
Q 016883 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (381)
|+++|.+|||||||++++.+... ...+..| .......+...+..+.+|||||..++..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~--~~~~~pt-~g~~~~~i~~~~~~l~i~Dt~G~~~~~~------------------- 59 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS--LESVVPT-TGFNSVAIPTQDAIMELLEIGGSQNLRK------------------- 59 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC--ccccccc-CCcceEEEeeCCeEEEEEECCCCcchhH-------------------
Confidence 68999999999999999997743 1222222 1222334455667889999999865432
Q ss_pred CchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcccchh-
Q 016883 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIMQV- 323 (381)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~- 323 (381)
....++..+|++++|+|+++..+... ..++..+.....++|+++|+||+|+........
T Consensus 60 -------------------~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i 120 (164)
T cd04162 60 -------------------YWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEI 120 (164)
T ss_pred -------------------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHH
Confidence 33456789999999999987543322 334444433235899999999999866432221
Q ss_pred ------HHH-hhCCCceEEEecCC------CCCHHHHHHHHHH
Q 016883 324 ------SEF-WSLGFSPLPISAIS------GTGTGELLDLVCS 353 (381)
Q Consensus 324 ------~~~-~~~~~~~~~vSA~~------g~gi~~l~~~i~~ 353 (381)
..+ ...+++++++||++ ++|++++|+.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 121 HKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred HHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 111 22456789999999 9999999988753
No 157
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.76 E-value=5.5e-18 Score=144.68 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=91.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|.+|||||||+|++.+.... .. .|. .+.+.+ .+|||||.... .. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t~-----~~~~~~---~~iDt~G~~~~---~~----~---------- 51 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KTQ-----AVEYND---GAIDTPGEYVE---NR----R---------- 51 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cce-----eEEEcC---eeecCchhhhh---hH----H----------
Confidence 7899999999999999999987531 11 111 122223 68999997310 00 0
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccc-hh
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QV 323 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~-~~ 323 (381)
. .+.....+.++|++++|+|++++.+..+..+...+ ..|+++|+||+|+.+.... +.
T Consensus 52 ----------------~-~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~ 109 (142)
T TIGR02528 52 ----------------L-YSALIVTAADADVIALVQSATDPESRFPPGFASIF-----VKPVIGLVTKIDLAEADVDIER 109 (142)
T ss_pred ----------------H-HHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-----cCCeEEEEEeeccCCcccCHHH
Confidence 0 01222347899999999999987766554443322 4599999999998753221 11
Q ss_pred -HHH-hhCCC-ceEEEecCCCCCHHHHHHHHH
Q 016883 324 -SEF-WSLGF-SPLPISAISGTGTGELLDLVC 352 (381)
Q Consensus 324 -~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~ 352 (381)
.++ ...+. +++++||++|.|++++++++.
T Consensus 110 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 110 AKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 121 23344 789999999999999999874
No 158
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.2e-17 Score=146.54 Aligned_cols=160 Identities=19% Similarity=0.228 Sum_probs=118.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+++|+|..+|||||||++++.+.+- ....+....+.....+.+.+. ++++|||+|+++++.
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd-~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrs-------------- 86 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------------- 86 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhc-ccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhh--------------
Confidence 469999999999999999999987631 111222334444444555554 578999999988765
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CC-CCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YM-DKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~-~~p~ivV~NK~Dl~~ 317 (381)
..-.|++++.++|+|+|.++.-+..+ ..|++.++.. .. +.-+++|+||.||.+
T Consensus 87 ------------------------lipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 87 ------------------------LIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred ------------------------hhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 34468899999999999998655544 5666666654 23 366788999999998
Q ss_pred cccchhHH----HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcccc
Q 016883 318 KGIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELKKVEVC 361 (381)
Q Consensus 318 ~~~~~~~~----~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~~ 361 (381)
+......+ ...++..++++||+.|.||..+|..|...++...+.
T Consensus 143 krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~~ 190 (221)
T KOG0094|consen 143 KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEVL 190 (221)
T ss_pred hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCcccc
Confidence 76544332 245677899999999999999999999988876543
No 159
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.76 E-value=1.7e-17 Score=142.44 Aligned_cols=147 Identities=20% Similarity=0.172 Sum_probs=97.9
Q ss_pred EEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCC
Q 016883 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (381)
|+++|++|||||||+|+|.+.... ..+.. |.......+..++..+.+|||||.....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------------------- 58 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS--EDTIP-TVGFNMRKVTKGNVTLKVWDLGGQPRFR-------------------- 58 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC--cCccC-CCCcceEEEEECCEEEEEEECCCCHhHH--------------------
Confidence 689999999999999999987532 22221 2222223345566778999999985421
Q ss_pred CchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHH--hCCCCeEEEEEeCccCCCcccch
Q 016883 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK--NYMDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~--~~~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
.....++..+|++++|+|+++...... ..++..+.. ...++|+++|+||+|+.+.....
T Consensus 59 ------------------~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 120 (159)
T cd04159 59 ------------------SMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD 120 (159)
T ss_pred ------------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHH
Confidence 133456788999999999986432221 222222222 12478999999999987653222
Q ss_pred -hHHHh------hCCCceEEEecCCCCCHHHHHHHHHH
Q 016883 323 -VSEFW------SLGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 323 -~~~~~------~~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
..... ....+++++||++|.|+++++++|.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 11111 12357899999999999999999875
No 160
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=6.7e-18 Score=152.98 Aligned_cols=142 Identities=15% Similarity=0.093 Sum_probs=103.8
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCc--c-------------cccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNR--A-------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~--~-------------~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~ 228 (381)
.+|+++|++++|||||+++|+.... . ......++|.+.....+..++..+.++||||+.++
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~---- 78 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY---- 78 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH----
Confidence 4799999999999999999985410 0 01113466666666566667788999999998531
Q ss_pred chhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe-EE
Q 016883 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-II 307 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p-~i 307 (381)
...+...+..+|++++|+|+..+...++.+++..+.+. ++| +|
T Consensus 79 ----------------------------------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~~~iI 122 (195)
T cd01884 79 ----------------------------------IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV--GVPYIV 122 (195)
T ss_pred ----------------------------------HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCcEE
Confidence 12455667889999999999999888888888888876 777 77
Q ss_pred EEEeCccCCCccc-chhH-----HH-hh-----CCCceEEEecCCCCCHH
Q 016883 308 LAVNKCESPRKGI-MQVS-----EF-WS-----LGFSPLPISAISGTGTG 345 (381)
Q Consensus 308 vV~NK~Dl~~~~~-~~~~-----~~-~~-----~~~~~~~vSA~~g~gi~ 345 (381)
+|+||+|+..... .+.. .. .. .+.+++++||++|.|+.
T Consensus 123 vviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 123 VFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 8999999974321 1111 11 11 24689999999999864
No 161
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.76 E-value=1.4e-17 Score=137.94 Aligned_cols=116 Identities=42% Similarity=0.614 Sum_probs=92.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|.+|+|||||+|+|++.....++..+++|++.....+.+++..+.++||||+.+.......
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~-------------- 66 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDND-------------- 66 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHH--------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHH--------------
Confidence 589999999999999999999766788999999999977777788889999999999764331110
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeC
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNK 312 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK 312 (381)
.. ....+...+..+|+++||+|++++....+.++++.++ . ++|+++|+||
T Consensus 67 --------------~~-~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~--~~~~i~v~NK 116 (116)
T PF01926_consen 67 --------------GK-EIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-N--KKPIILVLNK 116 (116)
T ss_dssp --------------HH-HHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-T--TSEEEEEEES
T ss_pred --------------HH-HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-c--CCCEEEEEcC
Confidence 01 1124556668899999999988755556677888885 3 9999999998
No 162
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.76 E-value=8.8e-18 Score=177.44 Aligned_cols=154 Identities=20% Similarity=0.300 Sum_probs=113.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe----CCceEEEEEcCCCCCccCCCchhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW----GEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~----~~~~~~liDTPG~~~~~~~~~~~~~~~~ 236 (381)
.+.+.|+++|++|+|||||+++|...... ....++.|.+.....+.+ .+..+.||||||+..+..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~---------- 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSS---------- 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHH----------
Confidence 45789999999999999999999987542 334455665544433333 246799999999864321
Q ss_pred hhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCC
Q 016883 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP 316 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~ 316 (381)
....++..+|++++|+|++++...+..+.+..+... ++|+|+|+||+|+.
T Consensus 311 ----------------------------mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~--~iPiIVViNKiDl~ 360 (742)
T CHL00189 311 ----------------------------MRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA--NVPIIVAINKIDKA 360 (742)
T ss_pred ----------------------------HHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc--CceEEEEEECCCcc
Confidence 233566889999999999998888887777777665 89999999999997
Q ss_pred Ccccch---hHHH-------hhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 317 RKGIMQ---VSEF-------WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 317 ~~~~~~---~~~~-------~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
...... .... +...++++++||++|.|+++|+++|....
T Consensus 361 ~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 361 NANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 643211 1111 11236899999999999999999998754
No 163
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.76 E-value=1.2e-17 Score=152.20 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=65.1
Q ss_pred HHHHHhccccEEEEEEeCCCC-CChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch----hHH-Hhh----CCCceE
Q 016883 265 QATAAIEESCVIIFLVDGQAG-LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ----VSE-FWS----LGFSPL 334 (381)
Q Consensus 265 ~~~~~l~~~d~ii~VvD~~~~-~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~----~~~-~~~----~~~~~~ 334 (381)
.+...+..+|++++|+|+.++ ...+..+.+..+... ...|+++|+||+|+.+..... ... ... .+.+++
T Consensus 99 ~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 177 (203)
T cd01888 99 TMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPII 177 (203)
T ss_pred HHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEE
Confidence 455667789999999999974 344445555555443 235799999999997643211 111 111 256899
Q ss_pred EEecCCCCCHHHHHHHHHHHhhh
Q 016883 335 PISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 335 ~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
++||++|+|+++|+++|.+.+++
T Consensus 178 ~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 178 PISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred EEeCCCCCCHHHHHHHHHHhCCC
Confidence 99999999999999999987764
No 164
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.75 E-value=1.2e-17 Score=174.38 Aligned_cols=155 Identities=19% Similarity=0.183 Sum_probs=117.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcc--cccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~--~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.|+++|++|+|||||+|+|++.... .....+++|.+..+..+..++..+.+|||||+.++.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~----------------- 64 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFI----------------- 64 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHH-----------------
Confidence 6899999999999999999975321 112345677777666677777889999999985421
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe-EEEEEeCccCCCcccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-IILAVNKCESPRKGIM 321 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p-~ivV~NK~Dl~~~~~~ 321 (381)
+.+...+..+|++++|+|++++...+..+.+..+... ++| +++|+||+|+.+....
T Consensus 65 ---------------------~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l--gi~~iIVVlNK~Dlv~~~~~ 121 (581)
T TIGR00475 65 ---------------------SNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLL--GIPHTIVVITKADRVNEEEI 121 (581)
T ss_pred ---------------------HHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCCCCCHHHH
Confidence 2445567889999999999998888888877777655 788 9999999999875422
Q ss_pred hh----H-HH-hh----CCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 322 QV----S-EF-WS----LGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 322 ~~----~-~~-~~----~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+. . .+ .. .+.+++++||++|+|+++++++|.+.+....
T Consensus 122 ~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 11 1 11 11 1578999999999999999999988776544
No 165
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.75 E-value=4.2e-17 Score=139.07 Aligned_cols=150 Identities=26% Similarity=0.271 Sum_probs=98.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
++|+++|.+|+|||||+|++.+.. ......+.++.+.....+..++ ..+.+|||||+.+....+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~------------- 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIR------------- 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHH-------------
Confidence 489999999999999999999987 4555566666666655566666 568899999976532211
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC-CChhH--HHHHHHHHHhCC-CCeEEEEEeCccCCC
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-LTAAD--EEIADWLRKNYM-DKFIILAVNKCESPR 317 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~-~~~~~--~~~~~~l~~~~~-~~p~ivV~NK~Dl~~ 317 (381)
......++.++.++|.... ....+ ..+...+..... +.|+++|+||+|+..
T Consensus 68 -------------------------~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 68 -------------------------RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD 122 (161)
T ss_pred -------------------------HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence 1223345555555554432 11111 123333333322 789999999999977
Q ss_pred cccchhHH--Hh-hCCCceEEEecCCCCCHHHHHHHHH
Q 016883 318 KGIMQVSE--FW-SLGFSPLPISAISGTGTGELLDLVC 352 (381)
Q Consensus 318 ~~~~~~~~--~~-~~~~~~~~vSA~~g~gi~~l~~~i~ 352 (381)
........ .. ....+++++||++|.|+++++++|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 123 AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred chhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 54322221 11 2244799999999999999999874
No 166
>PLN03108 Rab family protein; Provisional
Probab=99.75 E-value=4.2e-17 Score=149.36 Aligned_cols=157 Identities=16% Similarity=0.127 Sum_probs=106.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|++|+|||||+|++++..... ...+..+.+.....+.+++. .+.+|||||......
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~-~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~-------------- 70 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-------------- 70 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--------------
Confidence 5699999999999999999999875422 12222222222223444443 467999999754221
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|+++..+... ..|+..+... ....|+++|+||+|+...
T Consensus 71 ------------------------~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 71 ------------------------ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (210)
T ss_pred ------------------------HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 33456678999999999987554444 2455544433 247899999999999764
Q ss_pred ccch---hHH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 GIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~~~~---~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.... ... ....+++++++||++|.|++++|+++.+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 3221 111 133567899999999999999999988776543
No 167
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.75 E-value=7.1e-18 Score=154.31 Aligned_cols=144 Identities=26% Similarity=0.328 Sum_probs=100.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccc------------------------------cCCCCcccccceeeEEeCCceEE
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIV------------------------------VDEPGVTRDRMYGRSFWGEHEFM 214 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~------------------------------~~~~~tt~~~~~~~~~~~~~~~~ 214 (381)
+|+++|++|+|||||+++|+....... ....++|.+.....+.+++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 479999999999999999975432111 11156777777777778888999
Q ss_pred EEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHH
Q 016883 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA 294 (381)
Q Consensus 215 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~ 294 (381)
++||||+.++. ......+..+|++++|+|++.+...++....
T Consensus 81 liDTpG~~~~~--------------------------------------~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~ 122 (208)
T cd04166 81 IADTPGHEQYT--------------------------------------RNMVTGASTADLAILLVDARKGVLEQTRRHS 122 (208)
T ss_pred EEECCcHHHHH--------------------------------------HHHHHhhhhCCEEEEEEECCCCccHhHHHHH
Confidence 99999985321 1233456789999999999988777766655
Q ss_pred HHHHHhCCC-CeEEEEEeCccCCCccc------chhHH-H-hhCC---CceEEEecCCCCCHHHHH
Q 016883 295 DWLRKNYMD-KFIILAVNKCESPRKGI------MQVSE-F-WSLG---FSPLPISAISGTGTGELL 348 (381)
Q Consensus 295 ~~l~~~~~~-~p~ivV~NK~Dl~~~~~------~~~~~-~-~~~~---~~~~~vSA~~g~gi~~l~ 348 (381)
..+... + .++|+|+||+|+..... ..... + ...+ .+++++||++|.|+++..
T Consensus 123 ~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 123 YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 555543 4 45788999999875321 11111 1 1223 458999999999998643
No 168
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.74 E-value=4e-17 Score=142.89 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=100.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+|+++|.+|||||||+.++...... ...+ ++.......+.+++. .+.+|||+|....
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~--~~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~------------------ 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV--QLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPDA------------------ 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC--CCCC-CCccceEEEEEECCEEEEEEEEECCCCCch------------------
Confidence 7899999999999999998876532 2222 222222234555663 4789999998530
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCC--
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR-- 317 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~-- 317 (381)
.++..+|++++|+|.++..+... ..|+..+.... .+.|+++|+||+|+..
T Consensus 61 -------------------------~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~ 115 (158)
T cd04103 61 -------------------------QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN 115 (158)
T ss_pred -------------------------hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC
Confidence 23467999999999998766666 45666666542 4689999999999853
Q ss_pred cc-cchh--HHHh-h-CCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 318 KG-IMQV--SEFW-S-LGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 318 ~~-~~~~--~~~~-~-~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
.. .... ..+. . .++++++|||++|+||+++|+.+.+.
T Consensus 116 ~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 116 PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 11 1111 1121 2 35789999999999999999998764
No 169
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.74 E-value=3.1e-17 Score=151.54 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=104.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||++++....+ ...+.+|........+.+++. .+.+|||+|...+..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~--------------- 64 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDN--------------- 64 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHH---------------
Confidence 3899999999999999999998753 233333333222233445444 467899999865332
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|.+++.+.... .|...+.....+.|+++|+||+|+....
T Consensus 65 -----------------------l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~ 121 (222)
T cd04173 65 -----------------------VRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL 121 (222)
T ss_pred -----------------------HhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch
Confidence 222467899999999999986554442 3555555555689999999999986521
Q ss_pred -------------cc--hhHHH-hhCC-CceEEEecCCCCC-HHHHHHHHHHHhh
Q 016883 320 -------------IM--QVSEF-WSLG-FSPLPISAISGTG-TGELLDLVCSELK 356 (381)
Q Consensus 320 -------------~~--~~~~~-~~~~-~~~~~vSA~~g~g-i~~l~~~i~~~l~ 356 (381)
+. +...+ ...+ .+++++||++++| |+++|..+.....
T Consensus 122 ~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 122 ATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASL 176 (222)
T ss_pred hhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHH
Confidence 00 01111 2345 4899999999985 9999999887543
No 170
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.74 E-value=3.1e-17 Score=146.07 Aligned_cols=151 Identities=21% Similarity=0.202 Sum_probs=107.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|..|+||||++++|.......+ ..|.......+.+.+..+.+||.+|....+..+.
T Consensus 14 ~~~ililGl~~sGKTtll~~l~~~~~~~~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~------------- 76 (175)
T PF00025_consen 14 EIKILILGLDGSGKTTLLNRLKNGEISET----IPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWK------------- 76 (175)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHSSSEEEE----EEESSEEEEEEEETTEEEEEEEESSSGGGGGGGG-------------
T ss_pred EEEEEEECCCccchHHHHHHhhhcccccc----CcccccccceeeeCcEEEEEEeccccccccccce-------------
Confidence 45999999999999999999997653322 2344445555677888999999999876554333
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHH-HHH-hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADW-LRK-NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~-l~~-~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.++..+|++|||+|+++.....+ .+.+.. +.. ...++|+++++||+|+.+..
T Consensus 77 -------------------------~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 77 -------------------------SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM 131 (175)
T ss_dssp -------------------------GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred -------------------------eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc
Confidence 46688999999999987432222 333333 332 23589999999999987643
Q ss_pred cchhHH----Hh----hCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 320 IMQVSE----FW----SLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 320 ~~~~~~----~~----~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
..+... .. ...+.++.+||.+|+|+.+.++||.+.+
T Consensus 132 ~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 132 SEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp THHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 222221 11 2345689999999999999999998753
No 171
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.74 E-value=3.3e-17 Score=171.16 Aligned_cols=149 Identities=28% Similarity=0.358 Sum_probs=110.5
Q ss_pred cCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchh
Q 016883 170 GRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLA 249 (381)
Q Consensus 170 G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (381)
|.+|||||||+|++++.. ..+++++++|.+.....+.+++..+.+|||||+.+......+ +
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~--e---------------- 61 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE--E---------------- 61 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH--H----------------
Confidence 899999999999999986 478899999998888888888888999999999875432210 0
Q ss_pred hHHHHHhcchhHHHHHHHHH--hccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch--hHH
Q 016883 250 TREAAVARMPSMIERQATAA--IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ--VSE 325 (381)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~--l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~--~~~ 325 (381)
+....+ ...+|++++|+|+++. ..+..+...+.+. ++|+++|+||+|+.++.... ...
T Consensus 62 --------------~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i~~d~~~ 123 (591)
T TIGR00437 62 --------------EVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLEL--GIPMILALNLVDEAEKKGIRIDEEK 123 (591)
T ss_pred --------------HHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhc--CCCEEEEEehhHHHHhCCChhhHHH
Confidence 111122 2479999999999862 2233444445444 89999999999986533211 111
Q ss_pred -HhhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 326 -FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 326 -~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
....+.+++++||++|+|++++++++.+..
T Consensus 124 L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 124 LEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 234578999999999999999999998764
No 172
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.74 E-value=3.7e-17 Score=169.91 Aligned_cols=152 Identities=24% Similarity=0.312 Sum_probs=106.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCC-CcccccceeeEEe------------------CCceEEEEEcCCCCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGRSFW------------------GEHEFMLVDTGGVLN 223 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~-~tt~~~~~~~~~~------------------~~~~~~liDTPG~~~ 223 (381)
.+.|+++|++|+|||||+|+|.+.... ...+ ++|.+.....+.. ....+.||||||+..
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 668999999999999999999987532 2222 3444322221111 112488999999865
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+.. ....++..+|++++|+|++++...++.+.+..+... +
T Consensus 82 f~~--------------------------------------l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~--~ 121 (590)
T TIGR00491 82 FTN--------------------------------------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMY--K 121 (590)
T ss_pred HHH--------------------------------------HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc--C
Confidence 332 222456789999999999998888888887777765 8
Q ss_pred CeEEEEEeCccCCCcc--------------cc----hh-----------HH---H----------hhCCCceEEEecCCC
Q 016883 304 KFIILAVNKCESPRKG--------------IM----QV-----------SE---F----------WSLGFSPLPISAISG 341 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~~~--------------~~----~~-----------~~---~----------~~~~~~~~~vSA~~g 341 (381)
+|+++|+||+|+...- .. .. +. + +....+++++||++|
T Consensus 122 vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG 201 (590)
T TIGR00491 122 TPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG 201 (590)
T ss_pred CCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC
Confidence 9999999999996410 00 00 00 0 112458999999999
Q ss_pred CCHHHHHHHHHHHhh
Q 016883 342 TGTGELLDLVCSELK 356 (381)
Q Consensus 342 ~gi~~l~~~i~~~l~ 356 (381)
+|+++|+++|....+
T Consensus 202 eGideLl~~l~~l~~ 216 (590)
T TIGR00491 202 EGIPELLTMLAGLAQ 216 (590)
T ss_pred CChhHHHHHHHHHHH
Confidence 999999999876544
No 173
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.74 E-value=1.1e-16 Score=138.72 Aligned_cols=160 Identities=25% Similarity=0.337 Sum_probs=106.2
Q ss_pred EEEEcCCCCChhHHHHHHhCC-CcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 166 VAIVGRPNVGKSALFNRLVGG-NRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~-~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
|+++|.+|+|||||+|.+.+. .....+..+++|....... . +..+.++||||+..... +..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~~~D~~g~~~~~~-~~~-------------- 63 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN--V-NDKFRLVDLPGYGYAKV-SKE-------------- 63 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEE--c-cCeEEEecCCCcccccc-CHH--------------
Confidence 689999999999999999943 3344555555555443322 2 23789999999865322 110
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~ 324 (381)
..+.....+ .........++++++|+|........+.++...+... +.|+++|+||+|+.........
T Consensus 64 -----~~~~~~~~~-----~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~ 131 (170)
T cd01876 64 -----VKEKWGKLI-----EEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL--GIPFLVVLTKADKLKKSELAKA 131 (170)
T ss_pred -----HHHHHHHHH-----HHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc--CCCEEEEEEchhcCChHHHHHH
Confidence 001000101 1122222457899999999887767767777777765 7899999999999764332211
Q ss_pred ----H--H--hhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 325 ----E--F--WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 325 ----~--~--~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
. . .....+++++||+++.|+++++++|.+++
T Consensus 132 ~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 132 LKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred HHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 1 1 12345789999999999999999998764
No 174
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.74 E-value=7.4e-17 Score=144.81 Aligned_cols=153 Identities=16% Similarity=0.186 Sum_probs=102.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
+++++|++|+|||||++++...... .....+........+...+. .+.+|||||.........
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~------------- 67 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRP------------- 67 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhccccch-------------
Confidence 8999999999999999999865432 12222222222223334443 467999999865432111
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
..+..+|++++|+|.++..+..+ ..|+..+.....+.|+++|+||+|+.....
T Consensus 68 -------------------------~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~ 122 (187)
T cd04129 68 -------------------------LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAV 122 (187)
T ss_pred -------------------------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcc
Confidence 24578999999999987544443 246777766566899999999999854211
Q ss_pred ----------c--h-hHHH-hhCC-CceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 321 ----------M--Q-VSEF-WSLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 321 ----------~--~-~~~~-~~~~-~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
. + ...+ ...+ .+++++||++|.|++++++++.+.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 123 AKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred cccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhc
Confidence 1 0 1111 2234 378999999999999999999876654
No 175
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.73 E-value=4.6e-17 Score=147.54 Aligned_cols=151 Identities=17% Similarity=0.098 Sum_probs=99.8
Q ss_pred CEEEEEcCCCCChhHHHH-HHhCCCcc---cccCCCCccc--ccceee--------EEeCC--ceEEEEEcCCCCCccCC
Q 016883 164 PRVAIVGRPNVGKSALFN-RLVGGNRA---IVVDEPGVTR--DRMYGR--------SFWGE--HEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin-~L~~~~~~---~~~~~~~tt~--~~~~~~--------~~~~~--~~~~liDTPG~~~~~~~ 227 (381)
.+|+++|.+|||||||+. ++...... ....+.+|.. +..... ..+++ ..+.+|||+|.... .
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~ 80 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--D 80 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--h
Confidence 489999999999999996 55543211 1222222221 111000 12333 35789999998631 0
Q ss_pred CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCe
Q 016883 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKF 305 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p 305 (381)
...++..+|++++|+|.++..+.... .|+..++....+.|
T Consensus 81 --------------------------------------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~p 122 (195)
T cd01873 81 --------------------------------------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVP 122 (195)
T ss_pred --------------------------------------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCC
Confidence 11356899999999999987666553 37777766556889
Q ss_pred EEEEEeCccCCCc-------------------ccch---hHH-HhhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 306 IILAVNKCESPRK-------------------GIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 306 ~ivV~NK~Dl~~~-------------------~~~~---~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
+++|+||+|+... .... ... ....+.+++++||++|+|++++|+.+.+.
T Consensus 123 iilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 123 VILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred EEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 9999999998641 1111 111 13456789999999999999999998763
No 176
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=2.8e-17 Score=163.33 Aligned_cols=182 Identities=19% Similarity=0.203 Sum_probs=145.3
Q ss_pred CCCCCCCEEEEEcCCCCChhHHHHHHhCCC--------------cccccCCCCcccccceeeEEeCC---ceEEEEEcCC
Q 016883 158 VPEHLLPRVAIVGRPNVGKSALFNRLVGGN--------------RAIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGG 220 (381)
Q Consensus 158 ~~~~~~~~v~l~G~~gvGKSSLin~L~~~~--------------~~~~~~~~~tt~~~~~~~~~~~~---~~~~liDTPG 220 (381)
.|..+..++.++-+...|||||..+|+... ..++....|.|...+...+.+.+ ..+.++||||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG 134 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence 344556789999999999999999987431 11234456888888888888877 6788999999
Q ss_pred CCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHh
Q 016883 221 VLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN 300 (381)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~ 300 (381)
+.++... ..+.+.-||++++|+|++++...++..-+....+.
T Consensus 135 HvDFs~E--------------------------------------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~ 176 (650)
T KOG0462|consen 135 HVDFSGE--------------------------------------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA 176 (650)
T ss_pred cccccce--------------------------------------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc
Confidence 9998763 23566789999999999999999987766666665
Q ss_pred CCCCeEEEEEeCccCCCcccchhHH----Hhh-CCCceEEEecCCCCCHHHHHHHHHHHhhhcccccchhhhHHHHHHHH
Q 016883 301 YMDKFIILAVNKCESPRKGIMQVSE----FWS-LGFSPLPISAISGTGTGELLDLVCSELKKVEVCIGFLLICNAITKIF 375 (381)
Q Consensus 301 ~~~~p~ivV~NK~Dl~~~~~~~~~~----~~~-~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 375 (381)
+..+|.|+||+|+...+...... .+. ..-+++.+|||+|.|++++++.|.+.+++.....+-++..-..+.+|
T Consensus 177 --~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~Lifds~y 254 (650)
T KOG0462|consen 177 --GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEY 254 (650)
T ss_pred --CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhh
Confidence 89999999999998765443332 222 23479999999999999999999999999988888888888888888
Q ss_pred HhcC
Q 016883 376 HIIP 379 (381)
Q Consensus 376 ~~~~ 379 (381)
+.+.
T Consensus 255 D~y~ 258 (650)
T KOG0462|consen 255 DEYR 258 (650)
T ss_pred hhhc
Confidence 8764
No 177
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=4.2e-17 Score=163.10 Aligned_cols=154 Identities=22% Similarity=0.299 Sum_probs=123.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC---CceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
+.|.|+++|+...|||||+..+.+... ..++-.+.|.|.....+..+ ...++|+||||+..|..++.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~V-a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRa--------- 73 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNV-AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRA--------- 73 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcc-ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHh---------
Confidence 477999999999999999999998875 44556678998887777764 46899999999986554322
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
+-.+-+|++++|+++++++..++.+-+..++.. +.|+++++||+|..+.
T Consensus 74 -----------------------------RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a--~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 74 -----------------------------RGASVTDIAILVVAADDGVMPQTIEAINHAKAA--GVPIVVAINKIDKPEA 122 (509)
T ss_pred -----------------------------cCCccccEEEEEEEccCCcchhHHHHHHHHHHC--CCCEEEEEecccCCCC
Confidence 223679999999999999999999999999998 9999999999999864
Q ss_pred ccchhH-H---------HhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 319 GIMQVS-E---------FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~~~~~~-~---------~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
+..... + .|.....++++||++|+|+++|++.+.-..+
T Consensus 123 np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 123 NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 322211 1 1233457899999999999999999876544
No 178
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.73 E-value=8.5e-17 Score=140.03 Aligned_cols=152 Identities=21% Similarity=0.238 Sum_probs=108.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcc-cccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt-~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
||+++|.+|||||||++++.+.... .....+. .+.....+..++. .+.+|||+|......
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~--------------- 63 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP--ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDS--------------- 63 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT--SSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHH---------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc--cccccccccccccccccccccccccccccccccccccc---------------
Confidence 6899999999999999999987532 2222222 3444444555554 478999999854221
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCC-CCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYM-DKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~-~~p~ivV~NK~Dl~~~~ 319 (381)
.....+..+|++++|+|.++..+... ..|+..+..... ..|+++|+||+|+....
T Consensus 64 -----------------------~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~ 120 (162)
T PF00071_consen 64 -----------------------LRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER 120 (162)
T ss_dssp -----------------------HHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS
T ss_pred -----------------------cccccccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence 22345788999999999987544443 457777777665 69999999999988633
Q ss_pred cchh---HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 320 IMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 320 ~~~~---~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.... .. ....+.+++++||+++.|+.+++..+.+.+.
T Consensus 121 ~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 121 EVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp SSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 2221 11 2345689999999999999999999988764
No 179
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.72 E-value=4e-17 Score=164.92 Aligned_cols=146 Identities=22% Similarity=0.245 Sum_probs=105.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCccc------------------------------ccCCCCcccccceeeEEeCCc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI------------------------------VVDEPGVTRDRMYGRSFWGEH 211 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~------------------------------~~~~~~tt~~~~~~~~~~~~~ 211 (381)
...+|+++|++++|||||+++|+...... ....+++|.+.....+..++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 35689999999999999999998542111 011467888888888888888
Q ss_pred eEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC--CCChh
Q 016883 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA--GLTAA 289 (381)
Q Consensus 212 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~--~~~~~ 289 (381)
.+.+|||||+.++.. .....+..+|++++|+|+++ +...+
T Consensus 85 ~i~liDtpG~~~~~~--------------------------------------~~~~~~~~aD~~ilVvDa~~~~~~~~~ 126 (425)
T PRK12317 85 YFTIVDCPGHRDFVK--------------------------------------NMITGASQADAAVLVVAADDAGGVMPQ 126 (425)
T ss_pred EEEEEECCCcccchh--------------------------------------hHhhchhcCCEEEEEEEcccCCCCCcc
Confidence 999999999864321 22234578999999999998 77777
Q ss_pred HHHHHHHHHHhCCC-CeEEEEEeCccCCCccc--c----hhH-HH-hhC-----CCceEEEecCCCCCHHHH
Q 016883 290 DEEIADWLRKNYMD-KFIILAVNKCESPRKGI--M----QVS-EF-WSL-----GFSPLPISAISGTGTGEL 347 (381)
Q Consensus 290 ~~~~~~~l~~~~~~-~p~ivV~NK~Dl~~~~~--~----~~~-~~-~~~-----~~~~~~vSA~~g~gi~~l 347 (381)
+.+++..+... + .|+++|+||+|+.+... . +.. .+ ... ..+++++||++|+|++++
T Consensus 127 ~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 127 TREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred hHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 77776666554 4 46999999999975221 1 111 11 112 257899999999999874
No 180
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.72 E-value=6.5e-17 Score=140.68 Aligned_cols=160 Identities=15% Similarity=0.102 Sum_probs=109.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
....+|.+.|.+|||||||+|++...++.... ......+.....+.+++. .+++|||.|++++.....
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qy-kaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~--------- 76 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQY-KATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGV--------- 76 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHh-ccccchhheeeEEEEcCeEEEEEEEecccHHHhhhccc---------
Confidence 34679999999999999999999987642211 111222333333445544 467999999988765332
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH-HHHH-HHHHhC----CCCeEEEEEeC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIAD-WLRKNY----MDKFIILAVNK 312 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~-~~~~-~l~~~~----~~~p~ivV~NK 312 (381)
.+++.+|++++|+|++.+-+.... .|.+ ++...- ..-|+|+++||
T Consensus 77 -----------------------------aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNK 127 (210)
T KOG0394|consen 77 -----------------------------AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNK 127 (210)
T ss_pred -----------------------------ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEccc
Confidence 466899999999999885444332 2333 333321 34689999999
Q ss_pred ccCCCcccc-----hhHH--HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 313 CESPRKGIM-----QVSE--FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 313 ~Dl~~~~~~-----~~~~--~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+|+...... .+.. ....++|+|++|||.+.|+++.|+.+.+.....+
T Consensus 128 iD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 128 IDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred ccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhcc
Confidence 999763211 1112 2345789999999999999999999988776655
No 181
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.72 E-value=2.9e-16 Score=142.22 Aligned_cols=165 Identities=19% Similarity=0.233 Sum_probs=117.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccC-CCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVD-EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
+|+++|.+|+|||||+|+|++......+. .+++|...+.....+++..+.++||||+.+.......+..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~---------- 71 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSK---------- 71 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHH----------
Confidence 78999999999999999999987543332 3467777777777778899999999999875432222111
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCC---CCeEEEEEeCccCCCccc
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM---DKFIILAVNKCESPRKGI 320 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~---~~p~ivV~NK~Dl~~~~~ 320 (381)
.+.+.+......+|+++||+++.+ ++..+..+++.+++.+. -.++++|+|++|...+..
T Consensus 72 -----------------~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~ 133 (196)
T cd01852 72 -----------------EIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGT 133 (196)
T ss_pred -----------------HHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCc
Confidence 122334444577999999999987 88888889988888542 278999999999876432
Q ss_pred chhH--------H-H-hhCCCceEEE-----ecCCCCCHHHHHHHHHHHhhh
Q 016883 321 MQVS--------E-F-WSLGFSPLPI-----SAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 321 ~~~~--------~-~-~~~~~~~~~v-----SA~~g~gi~~l~~~i~~~l~~ 357 (381)
.+.. . . ..-+-.++.. |+..+.++++|++.|.+.+++
T Consensus 134 ~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 134 LEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 2111 0 1 1112233333 356789999999999999886
No 182
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.72 E-value=1e-16 Score=167.46 Aligned_cols=156 Identities=26% Similarity=0.321 Sum_probs=108.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCccc--------cc------CCCCcccccceeeEEeC---C--ceEEEEEcCCCCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI--------VV------DEPGVTRDRMYGRSFWG---E--HEFMLVDTGGVLN 223 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~--------~~------~~~~tt~~~~~~~~~~~---~--~~~~liDTPG~~~ 223 (381)
..+++++|++++|||||+++|+...... .. ...+.|.......+.+. + ..+.||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3489999999999999999998642110 11 11245554444444432 2 4688999999976
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+.. .+..++..||++++|+|++++.+.++...+..+.+. +
T Consensus 83 F~~--------------------------------------~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~--~ 122 (595)
T TIGR01393 83 FSY--------------------------------------EVSRSLAACEGALLLVDAAQGIEAQTLANVYLALEN--D 122 (595)
T ss_pred HHH--------------------------------------HHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc--C
Confidence 432 344567899999999999998887776554444444 7
Q ss_pred CeEEEEEeCccCCCcccchhH-HH-hhCCC---ceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 304 KFIILAVNKCESPRKGIMQVS-EF-WSLGF---SPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~~~~~~~~-~~-~~~~~---~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.|+++|+||+|+......... +. ...+. +++++||++|.|+++++++|.+.++..
T Consensus 123 ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 123 LEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred CCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 899999999998653221111 11 11233 489999999999999999999988754
No 183
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.71 E-value=3.3e-18 Score=161.65 Aligned_cols=144 Identities=19% Similarity=0.071 Sum_probs=108.2
Q ss_pred cccccccccccccCCCCchHHHHhhhcCCC-CceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHH
Q 016883 39 FSPQLLSLSLHKHYPLPLPLTRHLRSLSPS-NDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREA 117 (381)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~ 117 (381)
--++++++|+..|.+....|.|||.-++.. ..+|||+||+||.++++. +..+....|...+|+.+.+++.++++
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~-----~~~~~~~~y~~~gy~v~~~s~~~~~~ 154 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEA-----AVKELLREYEDIGYPVLFVSAKNGDG 154 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHH-----HHHHHHHHHHhCCeeEEEecCcCccc
Confidence 457899999999999999999999988875 889999999999865443 11234478999999999999888877
Q ss_pred HHHHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCC---
Q 016883 118 KDAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE--- 194 (381)
Q Consensus 118 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~--- 194 (381)
...+... ..++ ..+++|+||||||||+|+|.+.....+++.
T Consensus 155 ~~~l~~~---------------------l~~~---------------~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~ 198 (301)
T COG1162 155 LEELAEL---------------------LAGK---------------ITVLLGQSGVGKSTLINALLPELNQKTGEISEK 198 (301)
T ss_pred HHHHHHH---------------------hcCC---------------eEEEECCCCCcHHHHHHhhCchhhhhhhhhccc
Confidence 3333322 2222 679999999999999999998743333332
Q ss_pred ----CCcccccceeeEEeCCceEEEEEcCCCCCccC
Q 016883 195 ----PGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (381)
Q Consensus 195 ----~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~ 226 (381)
.|||++.....+..+| .++||||+.++.-
T Consensus 199 ~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 199 LGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred CCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 3666666665543344 8999999987654
No 184
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.71 E-value=1.2e-16 Score=167.52 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=113.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcc--cccCCCCcccccceeeEEe-CCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~--~~~~~~~tt~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.|+++|++++|||||+++|++.... ......+.|.+..+..+.. ++..+.+|||||+.++.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi---------------- 65 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFL---------------- 65 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHH----------------
Confidence 6899999999999999999975321 2223356776665554433 45678899999995421
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe-EEEEEeCccCCCccc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-IILAVNKCESPRKGI 320 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p-~ivV~NK~Dl~~~~~ 320 (381)
+.+...+..+|++++|+|++++...++.+.+..+... ++| +++|+||+|+.++..
T Consensus 66 ----------------------~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~ 121 (614)
T PRK10512 66 ----------------------SNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT--GNPMLTVALTKADRVDEAR 121 (614)
T ss_pred ----------------------HHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCccCCHHH
Confidence 2344567889999999999999999998888877665 666 579999999986432
Q ss_pred ch----hH-HHh-hC---CCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 321 MQ----VS-EFW-SL---GFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 321 ~~----~~-~~~-~~---~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.+ .. .+. .. ..++|++||++|+|+++|+++|.+...+.
T Consensus 122 ~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~ 168 (614)
T PRK10512 122 IAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPERE 168 (614)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence 21 11 111 12 35899999999999999999998876554
No 185
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.71 E-value=9.3e-17 Score=158.20 Aligned_cols=213 Identities=18% Similarity=0.232 Sum_probs=162.2
Q ss_pred cchhHhhHHHHHHHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCC
Q 016883 108 IDVDALEREAKDAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 108 i~~sa~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.....+..++.+++...++.....+.+++++.++...... -.....+++++|.||||||||+|.++...
T Consensus 124 yrck~lk~aAlgrm~tv~k~q~~sl~yLeqVrqhl~rlPs-----------IDp~trTlllcG~PNVGKSSf~~~vtrad 192 (620)
T KOG1490|consen 124 YRCKQLKRAALGRMATIIKRQKSSLEYLEQVRQHLSRLPA-----------IDPNTRTLLVCGYPNVGKSSFNNKVTRAD 192 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-----------CCCCcCeEEEecCCCCCcHhhcccccccc
Confidence 3345566677777888888887777777777777654321 13456799999999999999999998876
Q ss_pred cccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHH
Q 016883 188 RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQAT 267 (381)
Q Consensus 188 ~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (381)
..+.++++||.....+.+.+.-..++++||||+.+......++++...| .++
T Consensus 193 -vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsI---------------------------TAL 244 (620)
T KOG1490|consen 193 -DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQII---------------------------TAL 244 (620)
T ss_pred -cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHH---------------------------HHH
Confidence 4788999999988888777777788999999999876666666665543 344
Q ss_pred HHhccccEEEEEEeCCC--CCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHH------H-hhCCCceEEEe
Q 016883 268 AAIEESCVIIFLVDGQA--GLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSE------F-WSLGFSPLPIS 337 (381)
Q Consensus 268 ~~l~~~d~ii~VvD~~~--~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~------~-~~~~~~~~~vS 337 (381)
.++.. +|+|++|.+. |.+..+ ..++..++..+.++|+|+|+||+|....+.+.... . ...+++++.+|
T Consensus 245 AHLra--aVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 245 AHLRS--AVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHhhh--hheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 44444 5788888776 666554 67888999999999999999999998765443322 1 22357899999
Q ss_pred cCCCCCHHHHHHHHHHHhhhcccc
Q 016883 338 AISGTGTGELLDLVCSELKKVEVC 361 (381)
Q Consensus 338 A~~g~gi~~l~~~i~~~l~~~~~~ 361 (381)
+.+.+|+.++....++.+......
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~RVE 346 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLAARVE 346 (620)
T ss_pred ccchhceeeHHHHHHHHHHHHHHH
Confidence 999999999999999887765543
No 186
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.70 E-value=2.3e-16 Score=145.98 Aligned_cols=149 Identities=19% Similarity=0.207 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCccc--------ccC-----CCCccccc------------------------ceeeEE
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAI--------VVD-----EPGVTRDR------------------------MYGRSF 207 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~--------~~~-----~~~tt~~~------------------------~~~~~~ 207 (381)
+|+++|+.++|||||++++....... ... ..|.|... ....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 47899999999999999998542110 000 01111100 001223
Q ss_pred eCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhc--cccEEEEEEeCCCC
Q 016883 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIE--ESCVIIFLVDGQAG 285 (381)
Q Consensus 208 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~d~ii~VvD~~~~ 285 (381)
..+..+.++||||+.++. +.+...+. .+|++++|+|+..+
T Consensus 81 ~~~~~i~liDtpG~~~~~--------------------------------------~~~~~~~~~~~~D~~llVvda~~g 122 (224)
T cd04165 81 KSSKLVTFIDLAGHERYL--------------------------------------KTTLFGLTGYAPDYAMLVVAANAG 122 (224)
T ss_pred eCCcEEEEEECCCcHHHH--------------------------------------HHHHHhhcccCCCEEEEEEECCCC
Confidence 446678999999986432 12333333 68999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh-HH----Hhh---------------------------CCCce
Q 016883 286 LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV-SE----FWS---------------------------LGFSP 333 (381)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~-~~----~~~---------------------------~~~~~ 333 (381)
...++.+++..+... ++|+++|+||+|+.+...... .. ... ...|+
T Consensus 123 ~~~~d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi 200 (224)
T cd04165 123 IIGMTKEHLGLALAL--NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPI 200 (224)
T ss_pred CcHHHHHHHHHHHHc--CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcE
Confidence 999999999998887 899999999999876432211 11 111 12388
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q 016883 334 LPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 334 ~~vSA~~g~gi~~l~~~i~~ 353 (381)
|.+||.+|+|+++|++.|..
T Consensus 201 ~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 201 FQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred EEeeCCCccCHHHHHHHHHh
Confidence 99999999999999988754
No 187
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.70 E-value=2e-16 Score=150.23 Aligned_cols=165 Identities=25% Similarity=0.312 Sum_probs=123.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe-CCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
..-|+++|.||+||||||+++...+ +++.++|+||..+..+.+.. .+..+++.|.||+.+..+...++
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GL---------- 227 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGL---------- 227 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCc----------
Confidence 3478999999999999999999886 69999999999999888876 45569999999999877655421
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCC---hhHH-HHHHHHHH---hCCCCeEEEEEeCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT---AADE-EIADWLRK---NYMDKFIILAVNKCE 314 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~---~~~~-~~~~~l~~---~~~~~p~ivV~NK~D 314 (381)
.-.+++++.+|.++++|+|.+..-. ..+. .+...+.+ .+.++|.++|+||+|
T Consensus 228 ---------------------G~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD 286 (369)
T COG0536 228 ---------------------GLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKID 286 (369)
T ss_pred ---------------------cHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccC
Confidence 1267789999999999999885321 2332 23344444 357999999999999
Q ss_pred CCCc-ccchhHHH---hhCCCceE-EEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 315 SPRK-GIMQVSEF---WSLGFSPL-PISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 315 l~~~-~~~~~~~~---~~~~~~~~-~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+... +..+.... ...++..+ ++||.+++|+++|...+.+.+.+..
T Consensus 287 ~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 287 LPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 5543 33333221 12344333 3999999999999999999887664
No 188
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.70 E-value=2e-16 Score=164.94 Aligned_cols=154 Identities=19% Similarity=0.232 Sum_probs=117.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCc-----ccc----------cCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNR-----AIV----------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQP 229 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~-----~~~----------~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~ 229 (381)
+|+++|+.++|||||+++|+...- ..+ ....+.|.......+.+.+..+.+|||||+.++..
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~--- 79 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGG--- 79 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHH---
Confidence 789999999999999999985311 001 11235666666667788899999999999976432
Q ss_pred hhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEE
Q 016883 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILA 309 (381)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV 309 (381)
.+..++..+|++++|+|+..+...+...++..+... ++|.++|
T Consensus 80 -----------------------------------ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~--~ip~IVv 122 (594)
T TIGR01394 80 -----------------------------------EVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL--GLKPIVV 122 (594)
T ss_pred -----------------------------------HHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC--CCCEEEE
Confidence 445677899999999999988888888888888776 8999999
Q ss_pred EeCccCCCcccchhH----HHh--------hCCCceEEEecCCCC----------CHHHHHHHHHHHhhhc
Q 016883 310 VNKCESPRKGIMQVS----EFW--------SLGFSPLPISAISGT----------GTGELLDLVCSELKKV 358 (381)
Q Consensus 310 ~NK~Dl~~~~~~~~~----~~~--------~~~~~~~~vSA~~g~----------gi~~l~~~i~~~l~~~ 358 (381)
+||+|+......+.. ... ...+|++++||++|. |++.|++.|.+.++..
T Consensus 123 iNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 123 INKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred EECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 999998654321111 111 135689999999996 8999999999988754
No 189
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.70 E-value=3.3e-16 Score=163.85 Aligned_cols=157 Identities=24% Similarity=0.293 Sum_probs=110.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcc--------cc------cCCCCcccccceeeEEeC-----CceEEEEEcCCCCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRA--------IV------VDEPGVTRDRMYGRSFWG-----EHEFMLVDTGGVLN 223 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~--------~~------~~~~~tt~~~~~~~~~~~-----~~~~~liDTPG~~~ 223 (381)
..+++++|+.++|||||+++|+...-. .. ....+.|.......+.+. +..+.||||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 558999999999999999999763210 00 112345554444444442 35688999999976
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+.. .+..++..+|++++|+|++++...++...+..+... +
T Consensus 87 F~~--------------------------------------~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~--~ 126 (600)
T PRK05433 87 FSY--------------------------------------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--D 126 (600)
T ss_pred HHH--------------------------------------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--C
Confidence 432 344567889999999999998887776655555544 8
Q ss_pred CeEEEEEeCccCCCcccchhH-HH-hhCCC---ceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 304 KFIILAVNKCESPRKGIMQVS-EF-WSLGF---SPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~~~~~~~~-~~-~~~~~---~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.|+++|+||+|+......... .. ...+. .++++||++|.|+++|+++|.+.++...
T Consensus 127 lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 127 LEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred CCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 899999999998654322111 11 11233 4899999999999999999999887543
No 190
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.70 E-value=5.3e-16 Score=142.29 Aligned_cols=158 Identities=16% Similarity=0.080 Sum_probs=105.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceee--EEe--CCceEEEEEcCCCCCccCCCchhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGR--SFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~--~~~--~~~~~~liDTPG~~~~~~~~~~~~~~~~ 236 (381)
....+|+++|++|||||||+++++..... ..+. +|....... +.. +...+.+|||+|..++..
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~---------- 73 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFE--KKYI-PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGG---------- 73 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCC--CCCC-CccceEEEEEEEEECCeEEEEEEEECCCchhhhh----------
Confidence 34679999999999999999876654321 1111 222222211 212 234678999999865322
Q ss_pred hhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccC
Q 016883 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCES 315 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl 315 (381)
....++..++++++|+|.++..+..+ ..|+..+.+...+.|+++|+||+|+
T Consensus 74 ----------------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl 125 (215)
T PTZ00132 74 ----------------------------LRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDV 125 (215)
T ss_pred ----------------------------hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccC
Confidence 12245668999999999987655544 3455555554568999999999998
Q ss_pred CCcccch-hHH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 316 PRKGIMQ-VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 316 ~~~~~~~-~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
....... ... ....++.++++||++|.|+++.+.+|.+.+....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 126 KDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDP 171 (215)
T ss_pred ccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhhcc
Confidence 6543221 112 2345678999999999999999999988776433
No 191
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.2e-16 Score=155.88 Aligned_cols=156 Identities=20% Similarity=0.242 Sum_probs=123.1
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe-CCceEEEEEcCCCCCccCCCchhhhhhhh
Q 016883 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (381)
Q Consensus 159 ~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 237 (381)
...+++.|.++|+...|||||+.+|....++ .+...|.|.|.....+.. .|..++|+||||+..+..++.
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRa-------- 219 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRA-------- 219 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCcee-hhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHh--------
Confidence 3457889999999999999999999988753 445667888876655544 567899999999975433211
Q ss_pred hhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
+....+|++++|+.++++...+..+.+...+.. +.|+|+.+||||...
T Consensus 220 ------------------------------RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A--~VpiVvAinKiDkp~ 267 (683)
T KOG1145|consen 220 ------------------------------RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA--NVPIVVAINKIDKPG 267 (683)
T ss_pred ------------------------------ccCccccEEEEEEEccCCccHhHHHHHHHHHhc--CCCEEEEEeccCCCC
Confidence 234568999999999999999999999999987 999999999999887
Q ss_pred cccchhHHH----------hhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 318 KGIMQVSEF----------WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 318 ~~~~~~~~~----------~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
......++. +..+.+++++||++|+|++.|-+.+.-..
T Consensus 268 a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 268 ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence 554433321 23356899999999999999999876543
No 192
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.69 E-value=3.3e-16 Score=131.77 Aligned_cols=146 Identities=22% Similarity=0.196 Sum_probs=97.7
Q ss_pred EEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe--CCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCC
Q 016883 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (381)
Q Consensus 168 l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (381)
++|++|+|||||+|++.+.... ......+........... .+..+.+|||||......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------------------- 60 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS------------------- 60 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh-------------------
Confidence 5799999999999999987631 122222222222222222 255689999999865322
Q ss_pred CchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHH---HHHHHhCCCCeEEEEEeCccCCCcccch
Q 016883 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA---DWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~---~~l~~~~~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
.....+..+|++++|+|++++....+.... ........++|+++|+||+|+.......
T Consensus 61 -------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~ 121 (157)
T cd00882 61 -------------------LRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVS 121 (157)
T ss_pred -------------------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchH
Confidence 223456789999999999986555443322 2222233589999999999997754433
Q ss_pred hH-----HHhhCCCceEEEecCCCCCHHHHHHHHH
Q 016883 323 VS-----EFWSLGFSPLPISAISGTGTGELLDLVC 352 (381)
Q Consensus 323 ~~-----~~~~~~~~~~~vSA~~g~gi~~l~~~i~ 352 (381)
.. .......+++++|+++|.|+++++++|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 122 EEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 32 1223467899999999999999999875
No 193
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.5e-16 Score=140.06 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=115.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.||||||-|+.++...++. ....+....+.....+.+++. +.+||||.|+++++.
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~-~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrA------------- 78 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFS-LESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRA------------- 78 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccC-cccccceeEEEEeeceeecCcEEEEeeecccchhhhcc-------------
Confidence 4679999999999999999999988752 333333344444444555665 457999999987653
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~ 317 (381)
.+..+++.+.++++|+|.+...+... ..|+..++... .++++++|+||+||..
T Consensus 79 -------------------------itSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 79 -------------------------ITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred -------------------------ccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 33467889999999999998777776 56888888865 7899999999999976
Q ss_pred cccchhH----HHhhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 318 KGIMQVS----EFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 318 ~~~~~~~----~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
-...... -....+..++++||..+.|+++.|+.+...
T Consensus 134 lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 134 LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTE 174 (222)
T ss_pred ccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHH
Confidence 3222111 123457789999999999999988776553
No 194
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.69 E-value=1.4e-16 Score=146.99 Aligned_cols=142 Identities=22% Similarity=0.211 Sum_probs=96.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCc------------------------------ccccCCCCcccccceeeEEeCCceEE
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNR------------------------------AIVVDEPGVTRDRMYGRSFWGEHEFM 214 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~------------------------------~~~~~~~~tt~~~~~~~~~~~~~~~~ 214 (381)
+|+++|++++|||||+.+|+...- .......++|++.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 378999999999999999863210 00111246777777777888899999
Q ss_pred EEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC-------CC
Q 016883 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-------LT 287 (381)
Q Consensus 215 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~-------~~ 287 (381)
+|||||+.++. ..+...+..+|++++|+|+.++ ..
T Consensus 81 liDtpG~~~~~--------------------------------------~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~ 122 (219)
T cd01883 81 ILDAPGHRDFV--------------------------------------PNMITGASQADVAVLVVDARKGEFEAGFEKG 122 (219)
T ss_pred EEECCChHHHH--------------------------------------HHHHHHhhhCCEEEEEEECCCCccccccccc
Confidence 99999985421 1334556789999999999874 33
Q ss_pred hhHHHHHHHHHHhCCCCeEEEEEeCccCCCc----c----cchhHH--HhhC-----CCceEEEecCCCCCHH
Q 016883 288 AADEEIADWLRKNYMDKFIILAVNKCESPRK----G----IMQVSE--FWSL-----GFSPLPISAISGTGTG 345 (381)
Q Consensus 288 ~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~----~----~~~~~~--~~~~-----~~~~~~vSA~~g~gi~ 345 (381)
.+..+.+...... ..+|+++|+||+|+... . ..+... +... +++++++||++|+|++
T Consensus 123 ~~~~~~~~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 123 GQTREHALLARTL-GVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cchHHHHHHHHHc-CCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 3444444444333 24789999999999732 1 111111 1111 3679999999999998
No 195
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.68 E-value=1.9e-16 Score=134.67 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=111.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcc--cccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT--RDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAI 237 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt--~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~ 237 (381)
..++|+++|.+|||||||+-++....+ .+...+| .+.....+.++|. ++.||||+|+++++...
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~f---d~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLT--------- 77 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTF---DDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLT--------- 77 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhccc---CccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccC---------
Confidence 357999999999999999999987753 1222233 3333344555554 57899999999877633
Q ss_pred hhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHH-HHHHHHHhC--CCCeEEEEEeCcc
Q 016883 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKNY--MDKFIILAVNKCE 314 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~-~~~~l~~~~--~~~p~ivV~NK~D 314 (381)
-.+++.+..+|+|+|++..-+....+ |+..+.-+. .++-.++|.||+|
T Consensus 78 -----------------------------pSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiD 128 (209)
T KOG0080|consen 78 -----------------------------PSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKID 128 (209)
T ss_pred -----------------------------HhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhccccc
Confidence 36788999999999998866655533 455554432 3455678999999
Q ss_pred CCCcccchhHH---H-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 315 SPRKGIMQVSE---F-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 315 l~~~~~~~~~~---~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
..+.......+ + ...+.-++++||++.+|+...|+.+.+.+.+.+
T Consensus 129 kes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 129 KESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred chhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 76543332222 2 345667899999999999999999888776543
No 196
>CHL00071 tufA elongation factor Tu
Probab=99.68 E-value=2.9e-16 Score=157.82 Aligned_cols=142 Identities=14% Similarity=0.095 Sum_probs=103.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCc---------------ccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccC
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNR---------------AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~---------------~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~ 226 (381)
...+|+++|++++|||||+|+|++... ......+++|.+.....+..++..+.|+||||+.++
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~-- 88 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY-- 88 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH--
Confidence 356899999999999999999986421 011122567776666556667778999999998531
Q ss_pred CCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe-
Q 016883 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p- 305 (381)
...+...+..+|++++|+|+..+...++.+++..+... ++|
T Consensus 89 ------------------------------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~--g~~~ 130 (409)
T CHL00071 89 ------------------------------------VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV--GVPN 130 (409)
T ss_pred ------------------------------------HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCE
Confidence 12445667789999999999999999999998888776 788
Q ss_pred EEEEEeCccCCCccc-chhH-----HH-hhC-----CCceEEEecCCCCC
Q 016883 306 IILAVNKCESPRKGI-MQVS-----EF-WSL-----GFSPLPISAISGTG 343 (381)
Q Consensus 306 ~ivV~NK~Dl~~~~~-~~~~-----~~-~~~-----~~~~~~vSA~~g~g 343 (381)
+|+++||+|+.+... .+.. .+ ... ..+++++||.+|.+
T Consensus 131 iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 131 IVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 678999999986332 1111 11 111 36899999999974
No 197
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.68 E-value=5e-16 Score=161.93 Aligned_cols=152 Identities=21% Similarity=0.279 Sum_probs=103.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCC-CcccccceeeEEe------------------CCceEEEEEcCCCC
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGRSFW------------------GEHEFMLVDTGGVL 222 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~-~tt~~~~~~~~~~------------------~~~~~~liDTPG~~ 222 (381)
+.+.|+++|++|+|||||+|+|.+.... ...+ +.|.+........ .-..+.||||||+.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 4679999999999999999999876432 2222 2232221111100 01137899999997
Q ss_pred CccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCC
Q 016883 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~ 302 (381)
++.. .....+..+|++++|+|++++...++.+.+..+...
T Consensus 83 ~f~~--------------------------------------~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-- 122 (586)
T PRK04004 83 AFTN--------------------------------------LRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-- 122 (586)
T ss_pred HHHH--------------------------------------HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc--
Confidence 5432 122345789999999999998888888877777765
Q ss_pred CCeEEEEEeCccCCCccc------------------ch-----------hHH---H----------hhCCCceEEEecCC
Q 016883 303 DKFIILAVNKCESPRKGI------------------MQ-----------VSE---F----------WSLGFSPLPISAIS 340 (381)
Q Consensus 303 ~~p~ivV~NK~Dl~~~~~------------------~~-----------~~~---~----------~~~~~~~~~vSA~~ 340 (381)
++|+++++||+|+...-. .+ .+. + +....+++++||++
T Consensus 123 ~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~t 202 (586)
T PRK04004 123 KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKT 202 (586)
T ss_pred CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCC
Confidence 899999999999853100 00 000 0 01235789999999
Q ss_pred CCCHHHHHHHHHHHh
Q 016883 341 GTGTGELLDLVCSEL 355 (381)
Q Consensus 341 g~gi~~l~~~i~~~l 355 (381)
|+|+++|++.+....
T Consensus 203 GeGi~dLl~~i~~~~ 217 (586)
T PRK04004 203 GEGIPDLLMVLAGLA 217 (586)
T ss_pred CCChHHHHHHHHHHH
Confidence 999999999886543
No 198
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.3e-16 Score=136.51 Aligned_cols=159 Identities=17% Similarity=0.124 Sum_probs=114.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..+++.++|..|||||+|+.+++...+..+.. .....+.....+.+++. ++++|||.|++.++.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frs------------- 70 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRS------------- 70 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc-ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHH-------------
Confidence 35699999999999999999999876432221 11222233334455554 578999999986543
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~ 317 (381)
.+..+++.+-++++|+|.++..+... ..|+..+++. ..+.-++++.||+|+..
T Consensus 71 -------------------------v~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~ 125 (216)
T KOG0098|consen 71 -------------------------VTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA 125 (216)
T ss_pred -------------------------HHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc
Confidence 56688899999999999998655544 3466666665 36888999999999987
Q ss_pred cccchhHH---H-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 318 KGIMQVSE---F-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~~~~~~~~---~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.......+ + ...++.++++||++++|+++.|......+-+..
T Consensus 126 rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 126 RREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIYRKI 171 (216)
T ss_pred cccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55433322 1 346788999999999999999887766554333
No 199
>PRK10218 GTP-binding protein; Provisional
Probab=99.68 E-value=7.1e-16 Score=160.85 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=116.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccc---------------cCCCCcccccceeeEEeCCceEEEEEcCCCCCccCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIV---------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~---------------~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 227 (381)
..+|+++|+.++|||||+++|+...-... ....+.|.......+.+++..+.+|||||+.++..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~- 83 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG- 83 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH-
Confidence 45899999999999999999986321110 11234555555566677888999999999976432
Q ss_pred CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEE
Q 016883 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (381)
.+..++..+|++++|+|+..+...++..++..+... ++|.+
T Consensus 84 -------------------------------------~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~--gip~I 124 (607)
T PRK10218 84 -------------------------------------EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY--GLKPI 124 (607)
T ss_pred -------------------------------------HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc--CCCEE
Confidence 344677899999999999998888887887777665 89999
Q ss_pred EEEeCccCCCcccchh----HHH--------hhCCCceEEEecCCCC----------CHHHHHHHHHHHhhhc
Q 016883 308 LAVNKCESPRKGIMQV----SEF--------WSLGFSPLPISAISGT----------GTGELLDLVCSELKKV 358 (381)
Q Consensus 308 vV~NK~Dl~~~~~~~~----~~~--------~~~~~~~~~vSA~~g~----------gi~~l~~~i~~~l~~~ 358 (381)
+|+||+|+........ ... ....+|++++||++|. |+..|++.|.+.++..
T Consensus 125 VviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 125 VVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred EEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 9999999875432111 111 1135789999999998 6889999999888754
No 200
>PRK12289 GTPase RsgA; Reviewed
Probab=99.67 E-value=1.9e-17 Score=162.29 Aligned_cols=145 Identities=20% Similarity=0.120 Sum_probs=101.7
Q ss_pred ccccccccccccccccCCCCchHHHHhhhcCC-CCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhh
Q 016883 36 LRSFSPQLLSLSLHKHYPLPLPLTRHLRSLSP-SNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALE 114 (381)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~ 114 (381)
.+...-.++++++..|.+.+..+.|||..+.. ..|++||+||+||...++ ...+.+.|...++..+.+|+.+
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~-------~~~~~~~~~~~g~~v~~iSA~t 159 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPTE-------QQQWQDRLQQWGYQPLFISVET 159 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChHH-------HHHHHHHHHhcCCeEEEEEcCC
Confidence 44444458899999888888899999987644 589999999999963211 1223355666778888999988
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCC
Q 016883 115 REAKDAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE 194 (381)
Q Consensus 115 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~ 194 (381)
+++...+. ..+. + ..++|+|+||||||||||+|++.....++..
T Consensus 160 g~GI~eL~---~~L~------------------~---------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~v 203 (352)
T PRK12289 160 GIGLEALL---EQLR------------------N---------------KITVVAGPSGVGKSSLINRLIPDVELRVGKV 203 (352)
T ss_pred CCCHHHHh---hhhc------------------c---------------ceEEEEeCCCCCHHHHHHHHcCccccccccc
Confidence 87732222 2220 0 1569999999999999999998865555555
Q ss_pred CC-------cccccceeeEEeCCceEEEEEcCCCCCccC
Q 016883 195 PG-------VTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (381)
Q Consensus 195 ~~-------tt~~~~~~~~~~~~~~~~liDTPG~~~~~~ 226 (381)
++ ||++.+...+. + ...++||||+....-
T Consensus 204 s~~~~rGrHTT~~~~l~~l~--~-g~~liDTPG~~~~~l 239 (352)
T PRK12289 204 SGKLGRGRHTTRHVELFELP--N-GGLLADTPGFNQPDL 239 (352)
T ss_pred cCCCCCCCCcCceeEEEECC--C-CcEEEeCCCcccccc
Confidence 54 77777554332 2 238999999976543
No 201
>PRK12736 elongation factor Tu; Reviewed
Probab=99.67 E-value=4.8e-16 Score=155.51 Aligned_cols=154 Identities=15% Similarity=0.121 Sum_probs=111.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCc----------c-----cccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNR----------A-----IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~----------~-----~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 227 (381)
..+|+++|++++|||||+++|++... . ......++|.+.....+..++..+.++||||+.++.
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~-- 89 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV-- 89 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH--
Confidence 56899999999999999999986310 0 011134667666555555566789999999986321
Q ss_pred CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe-E
Q 016883 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-I 306 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p-~ 306 (381)
..+...+..+|++++|+|+..+...++.+++..+... ++| +
T Consensus 90 ------------------------------------~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~--g~~~~ 131 (394)
T PRK12736 90 ------------------------------------KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--GVPYL 131 (394)
T ss_pred ------------------------------------HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCEE
Confidence 2334556789999999999999888988888888776 888 6
Q ss_pred EEEEeCccCCCccc-chhH----H-H-hhC-----CCceEEEecCCCC--------CHHHHHHHHHHHhh
Q 016883 307 ILAVNKCESPRKGI-MQVS----E-F-WSL-----GFSPLPISAISGT--------GTGELLDLVCSELK 356 (381)
Q Consensus 307 ivV~NK~Dl~~~~~-~~~~----~-~-~~~-----~~~~~~vSA~~g~--------gi~~l~~~i~~~l~ 356 (381)
|+|+||+|+.+.+. .+.. . + ... ..+++++||++|. +++.|++.+.+.++
T Consensus 132 IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 132 VVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 78899999975322 1111 1 1 111 3589999999983 68888888888775
No 202
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.67 E-value=7.3e-16 Score=131.47 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=93.0
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
.||+++|++|+|||||+++|.+.+. ....|.... +.+ .++||||-.--..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~-----~~~---~~IDTPGEyiE~~----------------- 51 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIE-----YYD---NTIDTPGEYIENP----------------- 51 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeE-----ecc---cEEECChhheeCH-----------------
Confidence 3899999999999999999998752 111232222 223 4699999642111
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCC--cccc
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR--KGIM 321 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~--~~~~ 321 (381)
.+.+........||+|++|.|++.+.......+...+ ++|+|-|+||+|+.. .+..
T Consensus 52 -----------------~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-----~~pvIGVITK~Dl~~~~~~i~ 109 (143)
T PF10662_consen 52 -----------------RFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-----NKPVIGVITKIDLPSDDANIE 109 (143)
T ss_pred -----------------HHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-----CCCEEEEEECccCccchhhHH
Confidence 0122344555789999999999986554443333332 789999999999983 3332
Q ss_pred hhHHH-hhCCC-ceEEEecCCCCCHHHHHHHHH
Q 016883 322 QVSEF-WSLGF-SPLPISAISGTGTGELLDLVC 352 (381)
Q Consensus 322 ~~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~ 352 (381)
...++ ..-++ .+|++|+.+|+|+++|+++|.
T Consensus 110 ~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 110 RAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 22222 22343 679999999999999999885
No 203
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.66 E-value=2.7e-16 Score=132.01 Aligned_cols=156 Identities=16% Similarity=0.196 Sum_probs=118.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCC-CcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~-~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
.++.+++|.||||||+|+-++....+ .+.+. .+..+.....+.++|. +++||||+|.+.++.
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt------------- 72 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT------------- 72 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHH-------------
Confidence 34668999999999999999987753 23332 2233444445555565 578999999976543
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
.+..+++..+++++|+|++++.+..+ ..|++.++......|-++|.||.|....
T Consensus 73 -------------------------itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 73 -------------------------ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred -------------------------HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc
Confidence 45567889999999999999877776 6799999998888999999999999876
Q ss_pred ccchhHH--H--hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 GIMQVSE--F--WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~~~~~~~--~--~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
....... . ...++.+|++|||..+|++..|.-|.+.+...
T Consensus 128 rvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 128 RVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVLQA 171 (198)
T ss_pred eeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHHHH
Confidence 5443322 2 34677999999999999999999988766543
No 204
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.66 E-value=9.5e-16 Score=154.05 Aligned_cols=158 Identities=18% Similarity=0.130 Sum_probs=104.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCc--ccccCCCCcccccceeeEEe------------------C--------Cce
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFW------------------G--------EHE 212 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~--~~~~~~~~tt~~~~~~~~~~------------------~--------~~~ 212 (381)
....+|+++|+.++|||||+.+|.+... .......+.|.........+ + ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 3456899999999999999999976411 01111223443322111110 0 246
Q ss_pred EEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC-ChhHH
Q 016883 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADE 291 (381)
Q Consensus 213 ~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~-~~~~~ 291 (381)
+.||||||+.++. ..+......+|++++|+|+.++. ..+..
T Consensus 87 i~liDtPG~~~f~--------------------------------------~~~~~~~~~~D~~llVVDa~~~~~~~~t~ 128 (411)
T PRK04000 87 VSFVDAPGHETLM--------------------------------------ATMLSGAALMDGAILVIAANEPCPQPQTK 128 (411)
T ss_pred EEEEECCCHHHHH--------------------------------------HHHHHHHhhCCEEEEEEECCCCCCChhHH
Confidence 8999999985321 23444556789999999999876 56666
Q ss_pred HHHHHHHHhCCCCeEEEEEeCccCCCcccch----hH-HHh----hCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 292 EIADWLRKNYMDKFIILAVNKCESPRKGIMQ----VS-EFW----SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 292 ~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~----~~-~~~----~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+.+..+... ...|+++|+||+|+.+..... .. .+. ..+.+++++||++|+|+++|+++|.+.++.
T Consensus 129 ~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 129 EHLMALDII-GIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHc-CCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 666666543 234789999999998643221 11 111 124689999999999999999999987764
No 205
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.66 E-value=1.6e-15 Score=141.51 Aligned_cols=113 Identities=21% Similarity=0.272 Sum_probs=85.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcc--c---cc------------CCCCcccccceeeEEeCCceEEEEEcCCCCCccCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRA--I---VV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~--~---~~------------~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 227 (381)
+|+++|++|+|||||+++|+..... . +. ...+.|.......+.+++.++.+|||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 3789999999999999999864210 0 00 112233444455667788899999999997532
Q ss_pred CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEE
Q 016883 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (381)
..+..++..+|++++|+|+..+...+...+.+.+.+. ++|++
T Consensus 79 ------------------------------------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~--~~P~i 120 (237)
T cd04168 79 ------------------------------------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL--NIPTI 120 (237)
T ss_pred ------------------------------------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEE
Confidence 2345677889999999999998887777888877776 89999
Q ss_pred EEEeCccCCC
Q 016883 308 LAVNKCESPR 317 (381)
Q Consensus 308 vV~NK~Dl~~ 317 (381)
+++||+|+..
T Consensus 121 ivvNK~D~~~ 130 (237)
T cd04168 121 IFVNKIDRAG 130 (237)
T ss_pred EEEECccccC
Confidence 9999999863
No 206
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.66 E-value=7.9e-16 Score=154.50 Aligned_cols=156 Identities=17% Similarity=0.110 Sum_probs=103.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcc--cccCCCCcccccceeeE--------------------E------eCCceEE
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGRS--------------------F------WGEHEFM 214 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~--~~~~~~~tt~~~~~~~~--------------------~------~~~~~~~ 214 (381)
..+|+++|++++|||||+++|.+.... ......+.|....+..+ . ..+..+.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 83 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVS 83 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEE
Confidence 458999999999999999999764210 00111122222111100 0 0135689
Q ss_pred EEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC-ChhHHHH
Q 016883 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEI 293 (381)
Q Consensus 215 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~-~~~~~~~ 293 (381)
+|||||+.++. ..+...+..+|++++|+|++++. ..+..+.
T Consensus 84 liDtPGh~~f~--------------------------------------~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~ 125 (406)
T TIGR03680 84 FVDAPGHETLM--------------------------------------ATMLSGAALMDGALLVIAANEPCPQPQTKEH 125 (406)
T ss_pred EEECCCHHHHH--------------------------------------HHHHHHHHHCCEEEEEEECCCCccccchHHH
Confidence 99999986421 23445566899999999999876 5666666
Q ss_pred HHHHHHhCCCCeEEEEEeCccCCCcccc----hhH-HHh----hCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 294 ADWLRKNYMDKFIILAVNKCESPRKGIM----QVS-EFW----SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 294 ~~~l~~~~~~~p~ivV~NK~Dl~~~~~~----~~~-~~~----~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+..+... ...|+++|+||+|+.+.+.. +.. .+. ..+.+++++||++|+|+++|+++|...++.
T Consensus 126 l~~l~~~-gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 126 LMALEII-GIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHHHHHc-CCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 6655443 23578999999999864321 111 111 125689999999999999999999987653
No 207
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=1.8e-15 Score=140.16 Aligned_cols=168 Identities=18% Similarity=0.167 Sum_probs=123.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+.+++++|.+|+|||||||+|++.+...++..+-++....+....+++..+.+|||||+++.......
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~----------- 106 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAE----------- 106 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHH-----------
Confidence 356888999999999999999998766666655545544444445566788999999999986543321
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcc--
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG-- 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~-- 319 (381)
.......++...|++++++++.++.-..+..++..+.-..-++++++++|.+|...+.
T Consensus 107 --------------------~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~ 166 (296)
T COG3596 107 --------------------HRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGRE 166 (296)
T ss_pred --------------------HHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccc
Confidence 1234667888999999999999987777777776665544469999999999976431
Q ss_pred -----------cchhH--------HHhhCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 320 -----------IMQVS--------EFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 320 -----------~~~~~--------~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
..+.. ++...-.|++.+|...+.|++.+...+.+.++...-
T Consensus 167 W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r 226 (296)
T COG3596 167 WDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPVEAR 226 (296)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence 01100 112234488999999999999999999998875443
No 208
>PRK09866 hypothetical protein; Provisional
Probab=99.66 E-value=4.7e-15 Score=151.82 Aligned_cols=86 Identities=12% Similarity=0.093 Sum_probs=65.7
Q ss_pred HHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc--chh-HHH---h--hCC--C-ceEEE
Q 016883 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQV-SEF---W--SLG--F-SPLPI 336 (381)
Q Consensus 268 ~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~--~~~-~~~---~--~~~--~-~~~~v 336 (381)
..+..+|+|+||+|+.......+..+++.+++.....|+++|+||+|+.+... .+. ..+ . ... + .+++|
T Consensus 254 eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPV 333 (741)
T PRK09866 254 QQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPV 333 (741)
T ss_pred HHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 46789999999999998888888888888887622259999999999875221 111 111 1 112 2 58999
Q ss_pred ecCCCCCHHHHHHHHHH
Q 016883 337 SAISGTGTGELLDLVCS 353 (381)
Q Consensus 337 SA~~g~gi~~l~~~i~~ 353 (381)
||++|.|++.|++.|.+
T Consensus 334 SAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 334 SSMWGYLANRARHELAN 350 (741)
T ss_pred eCCCCCCHHHHHHHHHh
Confidence 99999999999999987
No 209
>PLN03127 Elongation factor Tu; Provisional
Probab=99.65 E-value=2.4e-15 Score=152.31 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=111.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC------Ccc---------cccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG------NRA---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~------~~~---------~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 227 (381)
..+|+++|+.++|||||+++|.+. ... .....+++|.+.....+..++..+.|+||||+.++-
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~-- 138 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV-- 138 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH--
Confidence 458999999999999999999732 100 112235778887776676677789999999996421
Q ss_pred CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe-E
Q 016883 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-I 306 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p-~ 306 (381)
..+...+..+|++++|+|+..+...++.+++..+... ++| +
T Consensus 139 ------------------------------------~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~--gip~i 180 (447)
T PLN03127 139 ------------------------------------KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSL 180 (447)
T ss_pred ------------------------------------HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCeE
Confidence 1333445679999999999999999999999988877 888 4
Q ss_pred EEEEeCccCCCccc-chhH-----HHh---h---CCCceEEEecC---CCCC-------HHHHHHHHHHHhh
Q 016883 307 ILAVNKCESPRKGI-MQVS-----EFW---S---LGFSPLPISAI---SGTG-------TGELLDLVCSELK 356 (381)
Q Consensus 307 ivV~NK~Dl~~~~~-~~~~-----~~~---~---~~~~~~~vSA~---~g~g-------i~~l~~~i~~~l~ 356 (381)
|+++||+|+.+... .+.. .+. . ...|++++||. +|.| +..|++.+.+.++
T Consensus 181 IvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 181 VVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred EEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 78899999985322 1111 111 1 23578888876 5555 7888888888765
No 210
>PRK12735 elongation factor Tu; Reviewed
Probab=99.64 E-value=1.5e-15 Score=152.03 Aligned_cols=154 Identities=18% Similarity=0.131 Sum_probs=109.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC------cc---------cccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN------RA---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~------~~---------~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 227 (381)
..+|+++|++++|||||+++|++.. .. ......++|.+.....+..++..+.|+||||+.++
T Consensus 12 ~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f--- 88 (396)
T PRK12735 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY--- 88 (396)
T ss_pred eEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH---
Confidence 5689999999999999999998621 00 01113466666655555556778999999998532
Q ss_pred CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEE
Q 016883 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (381)
...+...+..+|++++|+|+..+...++.+++..+... ++|.+
T Consensus 89 -----------------------------------~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~--gi~~i 131 (396)
T PRK12735 89 -----------------------------------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYI 131 (396)
T ss_pred -----------------------------------HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCeE
Confidence 12445667789999999999988888888888777765 78866
Q ss_pred -EEEeCccCCCccc-chh----H-HH-hh-----CCCceEEEecCCCC----------CHHHHHHHHHHHhh
Q 016883 308 -LAVNKCESPRKGI-MQV----S-EF-WS-----LGFSPLPISAISGT----------GTGELLDLVCSELK 356 (381)
Q Consensus 308 -vV~NK~Dl~~~~~-~~~----~-~~-~~-----~~~~~~~vSA~~g~----------gi~~l~~~i~~~l~ 356 (381)
+|+||+|+.+.+. .+. . .+ .. .+.+++++||++|. ++..|++.|.+.++
T Consensus 132 ivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 132 VVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 5799999975321 111 1 11 11 13688999999994 67888888887764
No 211
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.64 E-value=8e-15 Score=142.12 Aligned_cols=162 Identities=19% Similarity=0.208 Sum_probs=110.2
Q ss_pred EEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe------------------------CCceEEEEEcCCC
Q 016883 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW------------------------GEHEFMLVDTGGV 221 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~------------------------~~~~~~liDTPG~ 221 (381)
|+++|.||||||||+|+|++.. ..++++|++|.+...+...+ ....+.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 4799999999999999999886 47889999998877654432 1246899999999
Q ss_pred CCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC------------CC-h
Q 016883 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------------LT-A 288 (381)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~------------~~-~ 288 (381)
........+ +..+++..++.||++++|+|+... .. .
T Consensus 80 v~ga~~~~g-------------------------------lg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~ 128 (318)
T cd01899 80 VPGAHEGKG-------------------------------LGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPL 128 (318)
T ss_pred CCCccchhh-------------------------------HHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHH
Confidence 754332211 123566788999999999998631 00 0
Q ss_pred hHHHH-------------------------------------------------HHHHHH--------------------
Q 016883 289 ADEEI-------------------------------------------------ADWLRK-------------------- 299 (381)
Q Consensus 289 ~~~~~-------------------------------------------------~~~l~~-------------------- 299 (381)
.+.++ ...+.+
T Consensus 129 ~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~ 208 (318)
T cd01899 129 EDIEFLENEIDMWIYGILEKNWEKIVRKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLAR 208 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHH
Confidence 01100 000000
Q ss_pred --hCCCCeEEEEEeCccCCCcccchh-HHHhhCCCceEEEecCCCCCHHHHHH-HHHHHhhhcc
Q 016883 300 --NYMDKFIILAVNKCESPRKGIMQV-SEFWSLGFSPLPISAISGTGTGELLD-LVCSELKKVE 359 (381)
Q Consensus 300 --~~~~~p~ivV~NK~Dl~~~~~~~~-~~~~~~~~~~~~vSA~~g~gi~~l~~-~i~~~l~~~~ 359 (381)
....+|+|+|+||+|+...+.... ........+++++||+.+.|+++|.+ .+.+++++..
T Consensus 209 ~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 209 ALRKRSKPMVIAANKADIPDAENNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred HHHhcCCcEEEEEEHHHccChHHHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 024579999999999864432211 11122245789999999999999998 6999997654
No 212
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.63 E-value=5.4e-15 Score=126.41 Aligned_cols=153 Identities=18% Similarity=0.251 Sum_probs=114.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|.++|..|+||||+++++.+.....++ .|...+...+.+++..+.+||..|+...+.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~----pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~---------------- 75 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTIS----PTLGFQIKTLEYKGYTLNIWDVGGQKTLRS---------------- 75 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccC----CccceeeEEEEecceEEEEEEcCCcchhHH----------------
Confidence 459999999999999999999998643333 455566666788899999999999975443
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHH-HHHHH-hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIA-DWLRK-NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~-~~l~~-~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.+..|+..+|++|||+|.+++...++ ...+ ..+.+ .+.+.|++++.||.|+...-
T Consensus 76 ----------------------~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l 133 (185)
T KOG0073|consen 76 ----------------------YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGAL 133 (185)
T ss_pred ----------------------HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcccc
Confidence 45578899999999999987655444 2222 22222 34689999999999997532
Q ss_pred cchh----HH---H-hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 320 IMQV----SE---F-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 320 ~~~~----~~---~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
..+. .. . ....++++-|||.+|+++.+-++|++..+..
T Consensus 134 ~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 134 SLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred CHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 2221 11 2 3446799999999999999999999987765
No 213
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.63 E-value=2.3e-15 Score=143.07 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=89.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC-----cccc------------cCCCCcccccceeeEEeCCceEEEEEcCCCCCccCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN-----RAIV------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~-----~~~~------------~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 227 (381)
+|+++|++|+|||||+++|+... ...+ ....++|.+.....+.+++.++.++||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 47899999999999999997321 1111 1234667777777788889999999999986522
Q ss_pred CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEE
Q 016883 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (381)
..+..++..+|++++|+|+..+...++..++..+... ++|++
T Consensus 79 ------------------------------------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~--~~p~i 120 (270)
T cd01886 79 ------------------------------------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY--NVPRI 120 (270)
T ss_pred ------------------------------------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEE
Confidence 2455677899999999999999888888888888776 89999
Q ss_pred EEEeCccCCCc
Q 016883 308 LAVNKCESPRK 318 (381)
Q Consensus 308 vV~NK~Dl~~~ 318 (381)
+++||+|+.+.
T Consensus 121 vviNK~D~~~a 131 (270)
T cd01886 121 AFVNKMDRTGA 131 (270)
T ss_pred EEEECCCCCCC
Confidence 99999998754
No 214
>PRK00049 elongation factor Tu; Reviewed
Probab=99.63 E-value=2.8e-15 Score=150.04 Aligned_cols=154 Identities=18% Similarity=0.128 Sum_probs=111.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCc------c---------cccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNR------A---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~------~---------~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 227 (381)
..+|+++|++++|||||+++|++... . ......++|.+.....+..++..+.++||||+.++
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f--- 88 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY--- 88 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH---
Confidence 45899999999999999999987310 0 01113567777665555566778999999998531
Q ss_pred CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEE
Q 016883 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (381)
...+...+..+|++++|+|+..+...++.+++..+... ++|.+
T Consensus 89 -----------------------------------~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~--g~p~i 131 (396)
T PRK00049 89 -----------------------------------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYI 131 (396)
T ss_pred -----------------------------------HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc--CCCEE
Confidence 12444556889999999999999888888888888876 88976
Q ss_pred -EEEeCccCCCccc-chhH-----HH-hh-----CCCceEEEecCCCC----------CHHHHHHHHHHHhh
Q 016883 308 -LAVNKCESPRKGI-MQVS-----EF-WS-----LGFSPLPISAISGT----------GTGELLDLVCSELK 356 (381)
Q Consensus 308 -vV~NK~Dl~~~~~-~~~~-----~~-~~-----~~~~~~~vSA~~g~----------gi~~l~~~i~~~l~ 356 (381)
+++||+|+.+... .+.. .+ .. .+.+++++||++|. |+..|++.|.+.++
T Consensus 132 iVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 132 VVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred EEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 5899999975321 1111 11 11 24689999999975 56788888877654
No 215
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.62 E-value=7.7e-15 Score=133.07 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=102.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCC----CCcccccceeeEEe-CCceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDE----PGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~----~~tt~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
.+|+++|.+|+|||||+|+|++......+.. ..+|..... +.. ....+.+|||||+.+.......
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~~-------- 71 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPDD-------- 71 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHHH--------
Confidence 4799999999999999999998542211111 112222211 111 1236899999999754321111
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
++. ...+..+|++++|.+ .+++..+..++..+++. ++|+++|+||+|+...
T Consensus 72 ----------------------~l~---~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 72 ----------------------YLE---EMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLS 122 (197)
T ss_pred ----------------------HHH---HhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhh
Confidence 111 112467899888853 46788888899988887 8999999999998532
Q ss_pred cc---------c-hhH---H-----Hh-h--C-CCceEEEecC--CCCCHHHHHHHHHHHhhhcc
Q 016883 319 GI---------M-QVS---E-----FW-S--L-GFSPLPISAI--SGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 319 ~~---------~-~~~---~-----~~-~--~-~~~~~~vSA~--~g~gi~~l~~~i~~~l~~~~ 359 (381)
.. . +.. . .. . . ..++|.+|+. .+.|+..|.+.|...+++..
T Consensus 123 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 123 NEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred hhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 11 0 111 0 01 1 1 2378999998 68999999999999988754
No 216
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3.2e-15 Score=125.51 Aligned_cols=159 Identities=16% Similarity=0.180 Sum_probs=112.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCC-CcccccceeeEEe--CCceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~-~tt~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
-.+++.++|.+.+|||||+.+.++... +.... ....+.....+.- ...++++|||.|.+..+.
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSF--t~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrt------------ 85 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSF--TSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRT------------ 85 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhcccc--ccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhH------------
Confidence 356999999999999999999998753 12111 1111111111111 123678999999976332
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESP 316 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~ 316 (381)
.+..+++.++++|+++|..+..+... ..|.-.++.. ..+.|+|+|.||||+.
T Consensus 86 --------------------------iTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd 139 (193)
T KOG0093|consen 86 --------------------------ITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMD 139 (193)
T ss_pred --------------------------HHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCc
Confidence 56678899999999999987544433 3344444442 2589999999999998
Q ss_pred CcccchhHH----HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 317 RKGIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 317 ~~~~~~~~~----~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
++......+ ...+++.+|++|||.+.|+.++|+.+...+.+...
T Consensus 140 ~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 140 SERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred cceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHHHhh
Confidence 876544433 24578899999999999999999999998876553
No 217
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.62 E-value=3.5e-15 Score=150.86 Aligned_cols=146 Identities=22% Similarity=0.170 Sum_probs=98.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcc------------------------------cccCCCCcccccceeeEEeCCc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA------------------------------IVVDEPGVTRDRMYGRSFWGEH 211 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~------------------------------~~~~~~~tt~~~~~~~~~~~~~ 211 (381)
...+|+++|++++|||||+++|+...-. ......++|.+.....+..++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 3568999999999999999999852100 0011236677777777777788
Q ss_pred eEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC---CCh
Q 016883 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LTA 288 (381)
Q Consensus 212 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~---~~~ 288 (381)
.+.||||||+.++. +.+...+..+|++++|+|++++ ...
T Consensus 86 ~i~iiDtpGh~~f~--------------------------------------~~~~~~~~~aD~~ilVvDa~~~~~~~~~ 127 (426)
T TIGR00483 86 EVTIVDCPGHRDFI--------------------------------------KNMITGASQADAAVLVVAVGDGEFEVQP 127 (426)
T ss_pred EEEEEECCCHHHHH--------------------------------------HHHHhhhhhCCEEEEEEECCCCCcccCC
Confidence 89999999985421 1333456789999999999987 333
Q ss_pred hHHHHHHHHHHhCCCCeEEEEEeCccCCCccc--c----hhH-HH-hhC-----CCceEEEecCCCCCHHH
Q 016883 289 ADEEIADWLRKNYMDKFIILAVNKCESPRKGI--M----QVS-EF-WSL-----GFSPLPISAISGTGTGE 346 (381)
Q Consensus 289 ~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~--~----~~~-~~-~~~-----~~~~~~vSA~~g~gi~~ 346 (381)
+..+.+...... ...++++|+||+|+.+... . +.. .+ ... .++++++||++|.|+++
T Consensus 128 ~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 128 QTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred chHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 444444334332 2457999999999974211 1 111 11 112 35789999999999986
No 218
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.62 E-value=4.3e-15 Score=148.70 Aligned_cols=140 Identities=16% Similarity=0.120 Sum_probs=99.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC------cc---------cccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN------RA---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~------~~---------~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 227 (381)
..+|+++|+.++|||||+++|++.. .. ......++|.+.....+..++..+.||||||+.++.
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~-- 89 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV-- 89 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH--
Confidence 5689999999999999999998431 00 011125677776655555566779999999996421
Q ss_pred CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEE
Q 016883 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (381)
......+..+|++++|+|+..+...++.+++..+... ++|.+
T Consensus 90 ------------------------------------~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~--gi~~i 131 (394)
T TIGR00485 90 ------------------------------------KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV--GVPYI 131 (394)
T ss_pred ------------------------------------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEE
Confidence 1334455789999999999998888888888888776 77765
Q ss_pred -EEEeCccCCCccc-ch----hH-HH-hhC-----CCceEEEecCCCC
Q 016883 308 -LAVNKCESPRKGI-MQ----VS-EF-WSL-----GFSPLPISAISGT 342 (381)
Q Consensus 308 -vV~NK~Dl~~~~~-~~----~~-~~-~~~-----~~~~~~vSA~~g~ 342 (381)
+|+||+|+.+... .+ .. .+ ... +.+++++||++|.
T Consensus 132 IvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 132 VVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 6899999976432 11 11 11 111 2689999999985
No 219
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.62 E-value=2.6e-15 Score=150.72 Aligned_cols=143 Identities=23% Similarity=0.278 Sum_probs=100.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCccc--------------cc------------------CCCCcccccceeeEEeCCce
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAI--------------VV------------------DEPGVTRDRMYGRSFWGEHE 212 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~--------------~~------------------~~~~tt~~~~~~~~~~~~~~ 212 (381)
+++++|+.++|||||+++|+...... .+ ...+.|.+.....+.+++..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 78999999999999999997442100 00 11245566666667777888
Q ss_pred EEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHH
Q 016883 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE 292 (381)
Q Consensus 213 ~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~ 292 (381)
+.|+||||+.++. +.....+..+|++++|+|+..+...++.+
T Consensus 82 ~~liDtPGh~~f~--------------------------------------~~~~~~~~~aD~allVVda~~G~~~qt~~ 123 (406)
T TIGR02034 82 FIVADTPGHEQYT--------------------------------------RNMATGASTADLAVLLVDARKGVLEQTRR 123 (406)
T ss_pred EEEEeCCCHHHHH--------------------------------------HHHHHHHhhCCEEEEEEECCCCCccccHH
Confidence 9999999986421 13334567899999999999998888877
Q ss_pred HHHHHHHhCCCCeEEEEEeCccCCCccc--c----hhHH-H-hh---CCCceEEEecCCCCCHHH
Q 016883 293 IADWLRKNYMDKFIILAVNKCESPRKGI--M----QVSE-F-WS---LGFSPLPISAISGTGTGE 346 (381)
Q Consensus 293 ~~~~l~~~~~~~p~ivV~NK~Dl~~~~~--~----~~~~-~-~~---~~~~~~~vSA~~g~gi~~ 346 (381)
.+..+... ...++++|+||+|+.+... . +... + .. .+.+++++||++|+|+++
T Consensus 124 ~~~~~~~~-~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 124 HSYIASLL-GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHc-CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 77766654 1346888999999975321 1 1111 1 11 234799999999999986
No 220
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.61 E-value=4.4e-16 Score=133.72 Aligned_cols=123 Identities=22% Similarity=0.252 Sum_probs=83.2
Q ss_pred cccccccccCC-CCchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHH
Q 016883 43 LLSLSLHKHYP-LPLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAV 121 (381)
Q Consensus 43 ~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l 121 (381)
++++....|.. ...++.+|++...+.+|+++|+||+|+.+.+. ...+.+.+...+.+.+.+|+.++.
T Consensus 16 l~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~-------~~~~~~~~~~~~~~ii~iSa~~~~----- 83 (141)
T cd01857 16 VQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQ-------RKAWAEYFKKEGIVVVFFSALKEN----- 83 (141)
T ss_pred EEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHH-------HHHHHHHHHhcCCeEEEEEecCCC-----
Confidence 34444444433 34589999988766799999999999853211 111222233333444444443221
Q ss_pred HHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCccccc
Q 016883 122 REYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDR 201 (381)
Q Consensus 122 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~ 201 (381)
.+++++|.+|+|||||+|+|.+.....++..+++|++.
T Consensus 84 ------------------------------------------~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~ 121 (141)
T cd01857 84 ------------------------------------------ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHF 121 (141)
T ss_pred ------------------------------------------cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccce
Confidence 17899999999999999999998877788888888887
Q ss_pred ceeeEEeCCceEEEEEcCCCC
Q 016883 202 MYGRSFWGEHEFMLVDTGGVL 222 (381)
Q Consensus 202 ~~~~~~~~~~~~~liDTPG~~ 222 (381)
+...+ + ..+.+|||||+.
T Consensus 122 ~~~~~--~-~~~~i~DtpG~~ 139 (141)
T cd01857 122 QTIFL--T-PTITLCDCPGLV 139 (141)
T ss_pred EEEEe--C-CCEEEEECCCcC
Confidence 65443 3 368999999985
No 221
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.61 E-value=4.8e-16 Score=145.76 Aligned_cols=144 Identities=17% Similarity=0.077 Sum_probs=101.4
Q ss_pred ccccccccccccccccCCCCchHHHHhhhcC-CCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhh
Q 016883 36 LRSFSPQLLSLSLHKHYPLPLPLTRHLRSLS-PSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALE 114 (381)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~ 114 (381)
.|...--++++++..|......+.+|+..+. ...|++||+||+||.+.... ..++.+.|...+++.+.+|+.+
T Consensus 34 ~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~------~~~~~~~~~~~g~~v~~~SAkt 107 (245)
T TIGR00157 34 VANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDM------EKEQLDIYRNIGYQVLMTSSKN 107 (245)
T ss_pred cccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHHH------HHHHHHHHHHCCCeEEEEecCC
Confidence 4544555889999999988889999997664 45899999999999532211 1122245666778888899998
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccC-
Q 016883 115 REAKDAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVD- 193 (381)
Q Consensus 115 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~- 193 (381)
+++ +...+..+.. ..++++|++|||||||||+|.+.....+++
T Consensus 108 g~g---i~eLf~~l~~---------------------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i 151 (245)
T TIGR00157 108 QDG---LKELIEALQN---------------------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDI 151 (245)
T ss_pred chh---HHHHHhhhcC---------------------------------CEEEEECCCCCCHHHHHHHHhhhhhccccce
Confidence 887 3333222211 167999999999999999999875444333
Q ss_pred ------CCCcccccceeeEEeCCceEEEEEcCCCCCcc
Q 016883 194 ------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (381)
Q Consensus 194 ------~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~ 225 (381)
..|||++.+...+ .+ ..++||||+....
T Consensus 152 ~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~~ 185 (245)
T TIGR00157 152 SSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEFG 185 (245)
T ss_pred eccCCCCCCcCCceEEEEc--CC--cEEEeCCCccccC
Confidence 3457777766544 22 3899999998754
No 222
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.61 E-value=3.7e-15 Score=152.22 Aligned_cols=147 Identities=24% Similarity=0.270 Sum_probs=100.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccc--------------cC------------------CCCcccccceeeEEeCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIV--------------VD------------------EPGVTRDRMYGRSFWGE 210 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~--------------~~------------------~~~tt~~~~~~~~~~~~ 210 (381)
..+|+++|++++|||||+++|+....... +. ..+.|.+.....+..++
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~~ 106 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEK 106 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccCC
Confidence 56999999999999999999985531110 10 12344555555566677
Q ss_pred ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH
Q 016883 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (381)
Q Consensus 211 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~ 290 (381)
..+.|+||||+.++. +.....+..+|++++|+|+..+...++
T Consensus 107 ~~i~~iDTPGh~~f~--------------------------------------~~~~~~l~~aD~allVVDa~~G~~~qt 148 (474)
T PRK05124 107 RKFIIADTPGHEQYT--------------------------------------RNMATGASTCDLAILLIDARKGVLDQT 148 (474)
T ss_pred cEEEEEECCCcHHHH--------------------------------------HHHHHHHhhCCEEEEEEECCCCccccc
Confidence 889999999975321 133344688999999999999887777
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCccCCCccc--ch----hHH-H-hh----CCCceEEEecCCCCCHHHHH
Q 016883 291 EEIADWLRKNYMDKFIILAVNKCESPRKGI--MQ----VSE-F-WS----LGFSPLPISAISGTGTGELL 348 (381)
Q Consensus 291 ~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~--~~----~~~-~-~~----~~~~~~~vSA~~g~gi~~l~ 348 (381)
.+....+... ...++++|+||+|+.+... .. ... + .. ...+++++||++|+|++++.
T Consensus 149 ~~~~~l~~~l-g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 149 RRHSFIATLL-GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred hHHHHHHHHh-CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 6665555544 1357899999999974221 11 111 1 11 23679999999999998753
No 223
>PLN03126 Elongation factor Tu; Provisional
Probab=99.61 E-value=6.5e-15 Score=150.05 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=102.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcc---------------cccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRA---------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 227 (381)
..+++++|++++|||||+++|+..... ......+.|.+.....+..++..+.++||||+.++.
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~-- 158 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV-- 158 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH--
Confidence 568999999999999999999853110 112224566666555566678889999999996421
Q ss_pred CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe-E
Q 016883 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-I 306 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p-~ 306 (381)
..+...+..+|++++|+|+..+...++.+++..+... ++| +
T Consensus 159 ------------------------------------~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~--gi~~i 200 (478)
T PLN03126 159 ------------------------------------KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--GVPNM 200 (478)
T ss_pred ------------------------------------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeE
Confidence 2344556789999999999999999988888888776 888 7
Q ss_pred EEEEeCccCCCccc-chhH-----HH-hh-----CCCceEEEecCCCCC
Q 016883 307 ILAVNKCESPRKGI-MQVS-----EF-WS-----LGFSPLPISAISGTG 343 (381)
Q Consensus 307 ivV~NK~Dl~~~~~-~~~~-----~~-~~-----~~~~~~~vSA~~g~g 343 (381)
++++||+|+.+.+. .+.. .+ .. .+.+++++||.+|.+
T Consensus 201 IvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 201 VVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred EEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 78999999986322 1111 11 11 256899999999853
No 224
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.61 E-value=8.3e-16 Score=134.29 Aligned_cols=133 Identities=19% Similarity=0.154 Sum_probs=87.3
Q ss_pred CCCchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCC-CCccchhHhhHHHHHHHHHhhhhhhhh
Q 016883 53 PLPLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQ-DFGIDVDALEREAKDAVREYSSLLSRQ 131 (381)
Q Consensus 53 ~~~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~-~~~i~~sa~~~~~~~~l~~~~~~l~~~ 131 (381)
.....+.++++...+.+|+++|+||+|+.+.++ ...+...|.... ...+.+|+.++.+...+.+.....
T Consensus 24 ~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-------~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~--- 93 (157)
T cd01858 24 TRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-------TARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQF--- 93 (157)
T ss_pred ccCHHHHHHHHhccCCCCEEEEEEchhcCCHHH-------HHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHH---
Confidence 347788999987666699999999999963211 112222333221 113556777766643333332221
Q ss_pred hhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc
Q 016883 132 LIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH 211 (381)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~ 211 (381)
++. .. .....+++++|.||||||||+|+|.+.....++..+++|++.+.... +.
T Consensus 94 ~~~----------~~-------------~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~ 147 (157)
T cd01858 94 SKL----------HS-------------DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL---MK 147 (157)
T ss_pred Hhh----------hc-------------cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc---CC
Confidence 110 00 01134788999999999999999999988889999999988765432 34
Q ss_pred eEEEEEcCCC
Q 016883 212 EFMLVDTGGV 221 (381)
Q Consensus 212 ~~~liDTPG~ 221 (381)
.+.++||||+
T Consensus 148 ~~~liDtPGi 157 (157)
T cd01858 148 RIYLIDCPGV 157 (157)
T ss_pred CEEEEECcCC
Confidence 5899999996
No 225
>PRK12288 GTPase RsgA; Reviewed
Probab=99.61 E-value=4.1e-16 Score=152.82 Aligned_cols=140 Identities=19% Similarity=0.090 Sum_probs=95.6
Q ss_pred cccccccccCCCCchHHHHhhhcCC-CCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHH
Q 016883 43 LLSLSLHKHYPLPLPLTRHLRSLSP-SNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAV 121 (381)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l 121 (381)
+|++|. .|......+.||+..+.. ..|++||+||+|+.+..+. .....+.+.|...+++.+.+|+.++++...+
T Consensus 125 lIV~s~-~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~----~~~~~~~~~y~~~g~~v~~vSA~tg~GideL 199 (347)
T PRK12288 125 VIVSAV-LPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGR----AFVNEQLDIYRNIGYRVLMVSSHTGEGLEEL 199 (347)
T ss_pred EEEEeC-CCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHH----HHHHHHHHHHHhCCCeEEEEeCCCCcCHHHH
Confidence 467775 477788899999876665 3899999999999643211 1112233456666788899999888873333
Q ss_pred HHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCC------
Q 016883 122 REYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP------ 195 (381)
Q Consensus 122 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~------ 195 (381)
.+. +.. + .++|+|.||||||||||+|++.....++..+
T Consensus 200 ~~~---L~~------------------k---------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rG 243 (347)
T PRK12288 200 EAA---LTG------------------R---------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLG 243 (347)
T ss_pred HHH---Hhh------------------C---------------CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCC
Confidence 222 211 1 4689999999999999999998655555544
Q ss_pred -CcccccceeeEEeCCceEEEEEcCCCCCccC
Q 016883 196 -GVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (381)
Q Consensus 196 -~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~ 226 (381)
|||++.+...+..+ ..++||||+..+.-
T Consensus 244 rHTT~~~~l~~l~~~---~~liDTPGir~~~l 272 (347)
T PRK12288 244 QHTTTAARLYHFPHG---GDLIDSPGVREFGL 272 (347)
T ss_pred cCceeeEEEEEecCC---CEEEECCCCCcccC
Confidence 45666555444222 37999999987653
No 226
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=6.9e-15 Score=123.76 Aligned_cols=156 Identities=18% Similarity=0.146 Sum_probs=111.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|..|||||.|+.+++..-++ .+.......+.....+.++|. ++++|||.|+++++.
T Consensus 6 flfkivlvgnagvgktclvrrftqglfp-pgqgatigvdfmiktvev~gekiklqiwdtagqerfrs------------- 71 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRS------------- 71 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCC-CCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHH-------------
Confidence 3679999999999999999999987531 222222233344445566665 578999999987543
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCC-CCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYM-DKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~-~~p~ivV~NK~Dl~~ 317 (381)
.+..+++.+|.+|+|+|.+...+... .+|+..+.++.. ++--|+|.||+|+.+
T Consensus 72 -------------------------itqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 72 -------------------------ITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred -------------------------HHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh
Confidence 56688899999999999998655544 688888888643 455688999999977
Q ss_pred cccchhH---HHh-hCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 318 KGIMQVS---EFW-SLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 318 ~~~~~~~---~~~-~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
....... ++. ....-++++||+..+|++.||..+.-.+-
T Consensus 127 rrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 127 RREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRLI 169 (213)
T ss_pred hhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHHH
Confidence 5332221 121 12345689999999999999988765443
No 227
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.60 E-value=8.5e-15 Score=134.33 Aligned_cols=112 Identities=24% Similarity=0.307 Sum_probs=77.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCccccc------------------CCCCcccccceeeEEeC-----CceEEEEEcCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVV------------------DEPGVTRDRMYGRSFWG-----EHEFMLVDTGGV 221 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~------------------~~~~tt~~~~~~~~~~~-----~~~~~liDTPG~ 221 (381)
+|+++|++|+|||||+++|+........ ...+.+.......+.+. ...+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999865321110 00122222222222221 246889999999
Q ss_pred CCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhC
Q 016883 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (381)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~ 301 (381)
.++. ..+..++..+|++++|+|+.++.......+++.+...
T Consensus 82 ~~f~--------------------------------------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~- 122 (213)
T cd04167 82 VNFM--------------------------------------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE- 122 (213)
T ss_pred cchH--------------------------------------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-
Confidence 7542 1345667899999999999988777666666666554
Q ss_pred CCCeEEEEEeCccCC
Q 016883 302 MDKFIILAVNKCESP 316 (381)
Q Consensus 302 ~~~p~ivV~NK~Dl~ 316 (381)
++|+++|+||+|+.
T Consensus 123 -~~p~iiviNK~D~~ 136 (213)
T cd04167 123 -GLPIVLVINKIDRL 136 (213)
T ss_pred -CCCEEEEEECcccC
Confidence 79999999999986
No 228
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.59 E-value=7.6e-15 Score=155.24 Aligned_cols=145 Identities=26% Similarity=0.320 Sum_probs=100.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCccccc----------CC----------------------CCcccccceeeEEeCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVV----------DE----------------------PGVTRDRMYGRSFWGE 210 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~----------~~----------------------~~tt~~~~~~~~~~~~ 210 (381)
..+|+++|++|+|||||+|+|+........ .. .+.|.+.....+..++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 458999999999999999999865321110 01 2445555555666778
Q ss_pred ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH
Q 016883 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (381)
Q Consensus 211 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~ 290 (381)
..+.|+||||+.++. ......+..+|++++|+|+..+...++
T Consensus 104 ~~~~liDtPG~~~f~--------------------------------------~~~~~~~~~aD~~llVvda~~g~~~~t 145 (632)
T PRK05506 104 RKFIVADTPGHEQYT--------------------------------------RNMVTGASTADLAIILVDARKGVLTQT 145 (632)
T ss_pred ceEEEEECCChHHHH--------------------------------------HHHHHHHHhCCEEEEEEECCCCccccC
Confidence 889999999985321 123345678999999999998888877
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCccCCCc--ccch----hHH-H-hhCC---CceEEEecCCCCCHHH
Q 016883 291 EEIADWLRKNYMDKFIILAVNKCESPRK--GIMQ----VSE-F-WSLG---FSPLPISAISGTGTGE 346 (381)
Q Consensus 291 ~~~~~~l~~~~~~~p~ivV~NK~Dl~~~--~~~~----~~~-~-~~~~---~~~~~vSA~~g~gi~~ 346 (381)
.+....+... ...++++|+||+|+.+. ...+ ... + ...+ .+++++||++|.|+++
T Consensus 146 ~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 146 RRHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHh-CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 7776666554 13678899999999752 1111 111 1 1222 4689999999999984
No 229
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=1.8e-14 Score=125.94 Aligned_cols=153 Identities=21% Similarity=0.209 Sum_probs=116.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccc------cCCC---CcccccceeeEEeCC-ceEEEEEcCCCCCccCCCchhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIV------VDEP---GVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIM 232 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~------~~~~---~tt~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~~ 232 (381)
..+|+++|+.++||||++.++.......+ .... .||....++.+.+.+ ..++++||||+.++...+
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~---- 85 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW---- 85 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH----
Confidence 45999999999999999999998753111 1112 366666777777666 789999999998754422
Q ss_pred hhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeC
Q 016883 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNK 312 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK 312 (381)
....+.+...|+++|.+.+.+....++++.+.... .+|+++.+||
T Consensus 86 ----------------------------------~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~-~ip~vVa~NK 130 (187)
T COG2229 86 ----------------------------------EILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRN-PIPVVVAINK 130 (187)
T ss_pred ----------------------------------HHHhCCcceEEEEEecCCCcchHHHHHHHHHhhcc-CCCEEEEeec
Confidence 23456799999999999988887788888888762 2999999999
Q ss_pred ccCCCcccc----hhHHHhhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 313 CESPRKGIM----QVSEFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 313 ~Dl~~~~~~----~~~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
.|+.+..-- +.+.......|+|+++|..++|..+.++.+...
T Consensus 131 ~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 131 QDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred cccCCCCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 999774322 333322257899999999999999988887766
No 230
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=3.2e-15 Score=146.68 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=129.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCc--------------ccccCCCCcccccceeeEEeCC-----ceEEEEEcCCCC
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNR--------------AIVVDEPGVTRDRMYGRSFWGE-----HEFMLVDTGGVL 222 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~--------------~~~~~~~~tt~~~~~~~~~~~~-----~~~~liDTPG~~ 222 (381)
+..+..++.+-..|||||..+|+.... .......|.|...+...+.+.. ..+.++||||+.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 355789999999999999999875421 1233345778777766665532 357899999999
Q ss_pred CccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCC
Q 016883 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~ 302 (381)
++...- .+.+..|.+.++|+|++++...+...-+....+.
T Consensus 88 DFsYEV--------------------------------------SRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-- 127 (603)
T COG0481 88 DFSYEV--------------------------------------SRSLAACEGALLVVDASQGVEAQTLANVYLALEN-- 127 (603)
T ss_pred ceEEEe--------------------------------------hhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--
Confidence 987522 2556789999999999999988885544444444
Q ss_pred CCeEEEEEeCccCCCcccchhHHH--hhCCC---ceEEEecCCCCCHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHh
Q 016883 303 DKFIILAVNKCESPRKGIMQVSEF--WSLGF---SPLPISAISGTGTGELLDLVCSELKKVEVCIGFLLICNAITKIFHI 377 (381)
Q Consensus 303 ~~p~ivV~NK~Dl~~~~~~~~~~~--~~~~~---~~~~vSA~~g~gi~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 377 (381)
+.-++-|+||+|++..+....... .-.++ ..+.+|||+|.||+++++.|.+.++......+-++..-.++.||..
T Consensus 128 ~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~ 207 (603)
T COG0481 128 NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDN 207 (603)
T ss_pred CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccc
Confidence 889999999999987654333221 12333 5799999999999999999999999887666666665555665554
Q ss_pred c
Q 016883 378 I 378 (381)
Q Consensus 378 ~ 378 (381)
|
T Consensus 208 Y 208 (603)
T COG0481 208 Y 208 (603)
T ss_pred c
Confidence 3
No 231
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.58 E-value=2.8e-14 Score=135.42 Aligned_cols=116 Identities=19% Similarity=0.243 Sum_probs=83.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCc-----cccc----------CC------CCcccccceeeEEeCCceEEEEEcCCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNR-----AIVV----------DE------PGVTRDRMYGRSFWGEHEFMLVDTGGVL 222 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~-----~~~~----------~~------~~tt~~~~~~~~~~~~~~~~liDTPG~~ 222 (381)
.+|+++|++|+|||||+++|+.... ..+. ++ .+.+.......+.+.+..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 3899999999999999999985321 1110 00 0112222333567788899999999986
Q ss_pred CccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCC
Q 016883 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~ 302 (381)
++. ..+...+..+|++++|+|+..+...+...+++.....
T Consensus 83 df~--------------------------------------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~-- 122 (267)
T cd04169 83 DFS--------------------------------------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR-- 122 (267)
T ss_pred HHH--------------------------------------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc--
Confidence 532 1345667889999999999988777666677666555
Q ss_pred CCeEEEEEeCccCCCcc
Q 016883 303 DKFIILAVNKCESPRKG 319 (381)
Q Consensus 303 ~~p~ivV~NK~Dl~~~~ 319 (381)
++|+++++||+|+....
T Consensus 123 ~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 123 GIPIITFINKLDREGRD 139 (267)
T ss_pred CCCEEEEEECCccCCCC
Confidence 89999999999987654
No 232
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.57 E-value=2.1e-14 Score=122.70 Aligned_cols=155 Identities=20% Similarity=0.189 Sum_probs=110.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe-CC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~-~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
.+++.++|.+-||||||+..++..+.+..+ .|....+.....++. +| .++++|||+|++.++.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaels-dptvgvdffarlie~~pg~riklqlwdtagqerfrs------------- 73 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS-DPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRS------------- 73 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccC-CCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHH-------------
Confidence 358899999999999999999988776555 232233322222222 22 3578999999987543
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CC-CeEEEEEeCccC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MD-KFIILAVNKCES 315 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~-~p~ivV~NK~Dl 315 (381)
.+..++++.-.+++|+|.++..+... ..|+....... +. +-+.+|.+|+|+
T Consensus 74 -------------------------itksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL 128 (213)
T KOG0091|consen 74 -------------------------ITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDL 128 (213)
T ss_pred -------------------------HHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccch
Confidence 66788899999999999998666555 34555544432 23 335678999999
Q ss_pred CCcccchhHHH----hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 316 PRKGIMQVSEF----WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 316 ~~~~~~~~~~~----~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.........+. ...++.++++||++|.|+++.+..+.+.+-
T Consensus 129 ~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 129 QSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIF 173 (213)
T ss_pred hhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHH
Confidence 87655443322 346889999999999999999998877544
No 233
>PRK12739 elongation factor G; Reviewed
Probab=99.57 E-value=2.2e-14 Score=153.04 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=93.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCC-----ccccc------------CCCCcccccceeeEEeCCceEEEEEcCCCCCc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGN-----RAIVV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~-----~~~~~------------~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~ 224 (381)
...+|+++|++|+|||||+|+|+... ...+. ...++|.+.....+.+++..+.++||||+.++
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 35689999999999999999997431 11111 24567777777788889999999999998542
Q ss_pred cCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCC
Q 016883 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (381)
. ..+...+..+|++++|+|+..+...++..++..+.+. ++
T Consensus 87 ~--------------------------------------~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~--~~ 126 (691)
T PRK12739 87 T--------------------------------------IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY--GV 126 (691)
T ss_pred H--------------------------------------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--CC
Confidence 1 2456677889999999999999999888888888876 89
Q ss_pred eEEEEEeCccCCC
Q 016883 305 FIILAVNKCESPR 317 (381)
Q Consensus 305 p~ivV~NK~Dl~~ 317 (381)
|.++++||+|+..
T Consensus 127 p~iv~iNK~D~~~ 139 (691)
T PRK12739 127 PRIVFVNKMDRIG 139 (691)
T ss_pred CEEEEEECCCCCC
Confidence 9999999999874
No 234
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.57 E-value=1.3e-14 Score=147.20 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=100.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCc--c----------------------------cccCCCCcccccceeeEEeCCce
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNR--A----------------------------IVVDEPGVTRDRMYGRSFWGEHE 212 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~--~----------------------------~~~~~~~tt~~~~~~~~~~~~~~ 212 (381)
..+|+++|+.++|||||+.+|+...- . ......+.|.+.....+.+++..
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~ 86 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYY 86 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeE
Confidence 45899999999999999999875210 0 00112355666666667777888
Q ss_pred EEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC------
Q 016883 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL------ 286 (381)
Q Consensus 213 ~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~------ 286 (381)
+.|+||||+.++. ..+...+..+|++++|+|+..+.
T Consensus 87 i~lIDtPGh~~f~--------------------------------------~~~~~g~~~aD~ailVVda~~G~~e~~~~ 128 (446)
T PTZ00141 87 FTIIDAPGHRDFI--------------------------------------KNMITGTSQADVAILVVASTAGEFEAGIS 128 (446)
T ss_pred EEEEECCChHHHH--------------------------------------HHHHHhhhhcCEEEEEEEcCCCceecccC
Confidence 9999999986532 24455678999999999999875
Q ss_pred -ChhHHHHHHHHHHhCCCCe-EEEEEeCccCCC----ccc----chhHH-H-h--h---CCCceEEEecCCCCCHHH
Q 016883 287 -TAADEEIADWLRKNYMDKF-IILAVNKCESPR----KGI----MQVSE-F-W--S---LGFSPLPISAISGTGTGE 346 (381)
Q Consensus 287 -~~~~~~~~~~l~~~~~~~p-~ivV~NK~Dl~~----~~~----~~~~~-~-~--~---~~~~~~~vSA~~g~gi~~ 346 (381)
..+..+.+..+... ++| +|+++||+|... +.. .+... . . . .+++++++||.+|+|+.+
T Consensus 129 ~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 129 KDGQTREHALLAFTL--GVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CCccHHHHHHHHHHc--CCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 35677777777766 776 578999999532 111 11111 1 1 1 246899999999999964
No 235
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.57 E-value=2.4e-14 Score=145.03 Aligned_cols=158 Identities=16% Similarity=0.146 Sum_probs=105.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCccc--ccCCCCcccccceeeE---------------Ee----------------
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRS---------------FW---------------- 208 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~--~~~~~~tt~~~~~~~~---------------~~---------------- 208 (381)
...+|+++|+..+|||||+.+|++..... .....+.|.+..+... ..
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 35689999999999999999999753211 1111222322211100 00
Q ss_pred --CCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC-
Q 016883 209 --GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG- 285 (381)
Q Consensus 209 --~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~- 285 (381)
-...+.|+||||+.++ .+.+...+..+|++++|+|+..+
T Consensus 113 ~~~~~~i~~IDtPGH~~f--------------------------------------i~~m~~g~~~~D~alLVVda~~g~ 154 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDIL--------------------------------------MATMLNGAAVMDAALLLIAANESC 154 (460)
T ss_pred ccccceEeeeeCCCHHHH--------------------------------------HHHHHHHHhhCCEEEEEEECCCCc
Confidence 0236889999998532 13455667789999999999985
Q ss_pred CChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh----H-HH----hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 286 LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV----S-EF----WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~----~-~~----~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
...+..+.+..+... .-.++|+|+||+|+.+....+. . .+ ...+.+++++||++|+|++.|++.|.+.++
T Consensus 155 ~~~qT~ehl~i~~~l-gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 155 PQPQTSEHLAAVEIM-KLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred cchhhHHHHHHHHHc-CCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 566666666655443 2346889999999986432211 1 11 113568999999999999999999998776
Q ss_pred hc
Q 016883 357 KV 358 (381)
Q Consensus 357 ~~ 358 (381)
..
T Consensus 234 ~~ 235 (460)
T PTZ00327 234 IP 235 (460)
T ss_pred CC
Confidence 43
No 236
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.56 E-value=1.3e-14 Score=137.85 Aligned_cols=149 Identities=19% Similarity=0.271 Sum_probs=99.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcc--cccCC---------------CCcccccceeeEEeCCceEEEEEcCCCCCccCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRA--IVVDE---------------PGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~--~~~~~---------------~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 227 (381)
+|+++|++|+|||||+|+|+..... ..+.. .+.+.......+.+++..+.+|||||+.++.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~-- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV-- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH--
Confidence 4789999999999999999753211 00000 1223333344566778889999999986421
Q ss_pred CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEE
Q 016883 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (381)
..+..++..+|++++|+|++.+.......+++.+... ++|.+
T Consensus 79 ------------------------------------~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~--~~p~i 120 (268)
T cd04170 79 ------------------------------------GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA--GIPRI 120 (268)
T ss_pred ------------------------------------HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEE
Confidence 2455677899999999999988777777777777665 89999
Q ss_pred EEEeCccCCCcccchhHHH--hhCCCceE--EEecCCCCCHHHHHHHHHH
Q 016883 308 LAVNKCESPRKGIMQVSEF--WSLGFSPL--PISAISGTGTGELLDLVCS 353 (381)
Q Consensus 308 vV~NK~Dl~~~~~~~~~~~--~~~~~~~~--~vSA~~g~gi~~l~~~i~~ 353 (381)
+|+||+|+........... ...+.+++ .+...+|.|+..+.+.+..
T Consensus 121 ivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~ 170 (268)
T cd04170 121 IFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTE 170 (268)
T ss_pred EEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccC
Confidence 9999999886543322221 12344444 3446666666555555443
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.56 E-value=5.1e-14 Score=145.23 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=84.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC--CcccccC-------------C------CCcccccceeeEEeCCceEEEEEcCCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG--NRAIVVD-------------E------PGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~--~~~~~~~-------------~------~~tt~~~~~~~~~~~~~~~~liDTPG~ 221 (381)
..+|+++|++|+|||||+++|+.. .....+. + .+.+.......+.+++..+.+|||||+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 449999999999999999999732 1111111 0 122223333456777888999999999
Q ss_pred CCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhC
Q 016883 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (381)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~ 301 (381)
.++. ..+..++..+|++++|+|+..+...+...++......
T Consensus 90 ~df~--------------------------------------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~- 130 (526)
T PRK00741 90 EDFS--------------------------------------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR- 130 (526)
T ss_pred hhhH--------------------------------------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc-
Confidence 7532 1345667889999999999988887777777777665
Q ss_pred CCCeEEEEEeCccCCC
Q 016883 302 MDKFIILAVNKCESPR 317 (381)
Q Consensus 302 ~~~p~ivV~NK~Dl~~ 317 (381)
++|+++++||+|+..
T Consensus 131 -~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 131 -DTPIFTFINKLDRDG 145 (526)
T ss_pred -CCCEEEEEECCcccc
Confidence 899999999999753
No 238
>PRK00007 elongation factor G; Reviewed
Probab=99.56 E-value=5.1e-14 Score=150.28 Aligned_cols=116 Identities=20% Similarity=0.257 Sum_probs=92.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhC---CC--ccccc------------CCCCcccccceeeEEeCCceEEEEEcCCCCCc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVG---GN--RAIVV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~---~~--~~~~~------------~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~ 224 (381)
...+|+++|++|+|||||+|+|+. .. ...+. ...++|.+.....+.+.+..+.++||||+.++
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 356999999999999999999973 21 11111 23567777777778888999999999998642
Q ss_pred cCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCC
Q 016883 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (381)
. ..+...+..+|++++|+|+..+...++..++..+.+. ++
T Consensus 89 ~--------------------------------------~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~--~~ 128 (693)
T PRK00007 89 T--------------------------------------IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY--KV 128 (693)
T ss_pred H--------------------------------------HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc--CC
Confidence 1 1345667889999999999999999999999988887 89
Q ss_pred eEEEEEeCccCCC
Q 016883 305 FIILAVNKCESPR 317 (381)
Q Consensus 305 p~ivV~NK~Dl~~ 317 (381)
|.++++||+|+.+
T Consensus 129 p~iv~vNK~D~~~ 141 (693)
T PRK00007 129 PRIAFVNKMDRTG 141 (693)
T ss_pred CEEEEEECCCCCC
Confidence 9999999999864
No 239
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.56 E-value=6.1e-14 Score=127.09 Aligned_cols=155 Identities=21% Similarity=0.204 Sum_probs=114.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||+|+.++.+.. .+..+.+|..+.....+.+++. .+.|+||+|..++..+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~--f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~------------- 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR--FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAM------------- 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc--cccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHH-------------
Confidence 4589999999999999999999876 4566666766666666666655 3569999996543321
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHH--hCCCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK--NYMDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~--~~~~~p~ivV~NK~Dl~~ 317 (381)
-..++..+|+.++|++.++..+..+ ..+...+.+ .....|+++|+||+|+..
T Consensus 68 -------------------------~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 68 -------------------------RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred -------------------------HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 1245678999999999998666655 334444533 124679999999999987
Q ss_pred cccchhHH----HhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 318 KGIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 318 ~~~~~~~~----~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.......+ ....+.+++++||+...+++++|..|.+.+..
T Consensus 123 ~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 123 ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 43332222 23456689999999999999999999987775
No 240
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.56 E-value=1.2e-13 Score=137.68 Aligned_cols=163 Identities=20% Similarity=0.244 Sum_probs=109.8
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe---------------------C---CceEEEEEcC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---------------------G---EHEFMLVDTG 219 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~---------------------~---~~~~~liDTP 219 (381)
.+|+++|.||||||||+|+|++.. ..+++++++|.+...+...+ + ...+.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 489999999999999999999886 46788899998777665432 1 1357899999
Q ss_pred CCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC------------C
Q 016883 220 GVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL------------T 287 (381)
Q Consensus 220 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~------------~ 287 (381)
|+........+ +..+++..++.+|++++|+|+.... .
T Consensus 81 Gl~~ga~~g~g-------------------------------lg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~d 129 (396)
T PRK09602 81 GLVPGAHEGRG-------------------------------LGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHD 129 (396)
T ss_pred CcCCCccchhh-------------------------------HHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCC
Confidence 99765432221 2235667788999999999986210 0
Q ss_pred -hhHHH-------------------------------------------------HHHHHHH------------------
Q 016883 288 -AADEE-------------------------------------------------IADWLRK------------------ 299 (381)
Q Consensus 288 -~~~~~-------------------------------------------------~~~~l~~------------------ 299 (381)
..+.+ +.+.+.+
T Consensus 130 p~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I 209 (396)
T PRK09602 130 PVEDIKFLEEELDMWIYGILEKNWEKFSRKAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLEL 209 (396)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHH
Confidence 00000 1111111
Q ss_pred ----hCCCCeEEEEEeCccCCCccc-chhHHHhhCCCceEEEecCCCCCHHH-HHHHHHHHhhhcc
Q 016883 300 ----NYMDKFIILAVNKCESPRKGI-MQVSEFWSLGFSPLPISAISGTGTGE-LLDLVCSELKKVE 359 (381)
Q Consensus 300 ----~~~~~p~ivV~NK~Dl~~~~~-~~~~~~~~~~~~~~~vSA~~g~gi~~-l~~~i~~~l~~~~ 359 (381)
....+|+++|+||+|...... ......+ ....++++||+.+.++++ +++.+.++++...
T Consensus 210 ~~~~l~t~KPvI~VlNK~D~~~~~~~l~~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p 274 (396)
T PRK09602 210 ARELRKISKPMVIAANKADLPPAEENIERLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDS 274 (396)
T ss_pred HHhhhhcCCCEEEEEEchhcccchHHHHHHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC
Confidence 013599999999999764222 1111112 244689999999999999 8888888877544
No 241
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.55 E-value=9.1e-15 Score=122.82 Aligned_cols=151 Identities=21% Similarity=0.196 Sum_probs=111.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
.+.++|-.++|||||+|.+..... ......|+......++-++..+.+||.||+..++..
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g~~---~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsm----------------- 81 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARGQY---LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSM----------------- 81 (186)
T ss_pred eEEEEeeccCCcceEEEEEeeccc---hhhhcccccceeEEeccCceEEEEEecCCCccHHHH-----------------
Confidence 778999999999999998876543 234445666666666667778899999999876543
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC--CChhHHHHHHHHHH-hCCCCeEEEEEeCccCCCcccc
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG--LTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~--~~~~~~~~~~~l~~-~~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
...+.+.+++++||+|+.++ ++....++...+.+ .+.++|++++.||.|+...-..
T Consensus 82 ---------------------WerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~ 140 (186)
T KOG0075|consen 82 ---------------------WERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK 140 (186)
T ss_pred ---------------------HHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH
Confidence 33677889999999999884 34444555555544 4579999999999998764222
Q ss_pred hh----HHHh---hCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 322 QV----SEFW---SLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 322 ~~----~~~~---~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.. +... ...+-++.+|++...||+.+.+||.++-+
T Consensus 141 ~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 141 IALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred HHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 21 1111 12346799999999999999999998754
No 242
>PRK13351 elongation factor G; Reviewed
Probab=99.55 E-value=4.6e-14 Score=150.75 Aligned_cols=116 Identities=18% Similarity=0.279 Sum_probs=87.9
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCc-----ccc------cC------CCCcccccceeeEEeCCceEEEEEcCCCCCc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNR-----AIV------VD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~-----~~~------~~------~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~ 224 (381)
...+|+++|+.|+|||||+++|+...- ..+ .+ ..+.|.......+.+.+..+.+|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 356999999999999999999985320 000 00 1234555555567778889999999999653
Q ss_pred cCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCC
Q 016883 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (381)
. ..+..++..+|++++|+|+..+...+...++..+... ++
T Consensus 87 ~--------------------------------------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~--~~ 126 (687)
T PRK13351 87 T--------------------------------------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY--GI 126 (687)
T ss_pred H--------------------------------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc--CC
Confidence 2 2455677899999999999998887777777777666 89
Q ss_pred eEEEEEeCccCCC
Q 016883 305 FIILAVNKCESPR 317 (381)
Q Consensus 305 p~ivV~NK~Dl~~ 317 (381)
|+++|+||+|+..
T Consensus 127 p~iiviNK~D~~~ 139 (687)
T PRK13351 127 PRLIFINKMDRVG 139 (687)
T ss_pred CEEEEEECCCCCC
Confidence 9999999999864
No 243
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.54 E-value=6e-14 Score=127.94 Aligned_cols=111 Identities=23% Similarity=0.295 Sum_probs=71.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe----CCceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW----GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~----~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
+|+++|++|+|||||+++|.......+ .+.++ ........ .+..+.+|||||+...+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~--~~~~~~~~~~~~~~~~~~l~D~pG~~~~~--------------- 62 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIE--PNVATFILNSEGKGKKFRLVDVPGHPKLR--------------- 62 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEe--ecceEEEeecCCCCceEEEEECCCCHHHH---------------
Confidence 789999999999999999998753221 22111 11112222 25678999999996532
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccc-cEEEEEEeCCCCCCh-hH-HH-HHHHHHH---hCCCCeEEEEEeCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEES-CVIIFLVDGQAGLTA-AD-EE-IADWLRK---NYMDKFIILAVNKC 313 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-d~ii~VvD~~~~~~~-~~-~~-~~~~l~~---~~~~~p~ivV~NK~ 313 (381)
.....++..+ +++|||+|+.+.... .+ .+ +...+.. ...++|+++|+||+
T Consensus 63 -----------------------~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~ 119 (203)
T cd04105 63 -----------------------DKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQ 119 (203)
T ss_pred -----------------------HHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecch
Confidence 1334566777 999999999874221 11 12 2222221 12489999999999
Q ss_pred cCCC
Q 016883 314 ESPR 317 (381)
Q Consensus 314 Dl~~ 317 (381)
|+..
T Consensus 120 Dl~~ 123 (203)
T cd04105 120 DLFT 123 (203)
T ss_pred hhcc
Confidence 9864
No 244
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=3.5e-14 Score=124.26 Aligned_cols=155 Identities=23% Similarity=0.236 Sum_probs=115.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
....+|+++|--|+||||++..|-..+...+ . .|.......+.+.+..+.+||..|+...+..+
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt--v--PTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW------------ 78 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--V--PTIGFNVETVEYKNISFTVWDVGGQEKLRPLW------------ 78 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC--C--CccccceeEEEEcceEEEEEecCCCcccccch------------
Confidence 3455999999999999999999987765433 2 34444555567789999999999997665533
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC--ChhHHHHHHHHHHh-CCCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--TAADEEIADWLRKN-YMDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~--~~~~~~~~~~l~~~-~~~~p~ivV~NK~Dl~~ 317 (381)
..|+.+.+++|||+|.++.. .+...++.+.+... +.+.|+++..||.|+..
T Consensus 79 --------------------------~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 79 --------------------------KHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG 132 (181)
T ss_pred --------------------------hhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc
Confidence 36788999999999999843 33334455555543 36899999999999875
Q ss_pred cc----cchhHH---HhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 318 KG----IMQVSE---FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 318 ~~----~~~~~~---~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.- +.+... .....+.+-.++|.+|+|+.+.++|+.+.+.+
T Consensus 133 als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 133 ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 32 222222 23356678899999999999999999998765
No 245
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=5.4e-14 Score=118.89 Aligned_cols=157 Identities=16% Similarity=0.115 Sum_probs=108.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCccccc--ceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDR--MYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAI 237 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~--~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~ 237 (381)
..++++++|+.|.|||.|+..+...+.- +....|... ....+.+++. +++||||.|++.++.
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfk---DdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRS----------- 73 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFK---DDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRS----------- 73 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhc---ccccceeeeeecceeeeecCcEEEEEEeecccHHHHHH-----------
Confidence 4679999999999999999999876531 112222222 2223444443 578999999986543
Q ss_pred hhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccC
Q 016883 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCES 315 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl 315 (381)
.+..+++.+-..++|+|++...+... -.|+.-.+... .++-++++.||.|+
T Consensus 74 ---------------------------VtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL 126 (214)
T KOG0086|consen 74 ---------------------------VTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDL 126 (214)
T ss_pred ---------------------------HHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhc
Confidence 67788999999999999987555443 34555444432 46778889999999
Q ss_pred CCcccch---hHHHhh-CCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 316 PRKGIMQ---VSEFWS-LGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 316 ~~~~~~~---~~~~~~-~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.+..... +.++.. ..+.+.++||++|+|+++.|-...+.+....
T Consensus 127 ~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~kI 174 (214)
T KOG0086|consen 127 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 174 (214)
T ss_pred ChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHHHH
Confidence 8765433 333332 3446789999999999998776655544333
No 246
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.53 E-value=7.9e-14 Score=148.86 Aligned_cols=140 Identities=21% Similarity=0.277 Sum_probs=102.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCc-----ccccC------------CCCcccccceeeEEeCCceEEEEEcCCCCCc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNR-----AIVVD------------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~-----~~~~~------------~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~ 224 (381)
+..+|+++|++|+|||||+|+|+.... ..+.+ ..++|.......+.+++..+.+|||||+.++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 456999999999999999999974321 01111 2467777777788889999999999999753
Q ss_pred cCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCC
Q 016883 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (381)
.. .+..++..+|++++|+|+..+...++..++..+.+. ++
T Consensus 89 ~~--------------------------------------~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~ 128 (689)
T TIGR00484 89 TV--------------------------------------EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY--EV 128 (689)
T ss_pred hH--------------------------------------HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc--CC
Confidence 21 344667889999999999998888888888887776 89
Q ss_pred eEEEEEeCccCCCcccchhHHH--hhCCC----ceEEEecCCC
Q 016883 305 FIILAVNKCESPRKGIMQVSEF--WSLGF----SPLPISAISG 341 (381)
Q Consensus 305 p~ivV~NK~Dl~~~~~~~~~~~--~~~~~----~~~~vSA~~g 341 (381)
|+++|+||+|+........... ...+. ..+++|+..+
T Consensus 129 p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 129 PRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEeccccCCC
Confidence 9999999999986542222211 11121 2577888766
No 247
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.53 E-value=1.5e-13 Score=128.98 Aligned_cols=128 Identities=15% Similarity=0.156 Sum_probs=92.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|.+|||||||+|+|++.....++...++|..........++..+.+|||||+.+...... ..
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~--~~--------- 99 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQR--VN--------- 99 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHH--HH---------
Confidence 5699999999999999999999988767777777777776666677788899999999986421000 00
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhc--cccEEEEEEeCCC-CCChhHHHHHHHHHHhCC---CCeEEEEEeCccCC
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIE--ESCVIIFLVDGQA-GLTAADEEIADWLRKNYM---DKFIILAVNKCESP 316 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~d~ii~VvD~~~-~~~~~~~~~~~~l~~~~~---~~p~ivV~NK~Dl~ 316 (381)
+ .+......++. ..|+++||...+. .....+..+++.+.+.+. -.++++|+||+|..
T Consensus 100 ---------~--------~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 100 ---------R--------KILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred ---------H--------HHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 0 00112223333 5789999976654 567777888888887542 26799999999987
Q ss_pred Cc
Q 016883 317 RK 318 (381)
Q Consensus 317 ~~ 318 (381)
.+
T Consensus 163 ~p 164 (249)
T cd01853 163 PP 164 (249)
T ss_pred CC
Confidence 54
No 248
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.52 E-value=1.4e-13 Score=129.62 Aligned_cols=161 Identities=20% Similarity=0.223 Sum_probs=116.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe-CCceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
...+.|.++|++|+||||||++|++.. ....+..+.|.+++...... .|..+.+.||-||.. +.+..++++|
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aa-l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFis--dLP~~LvaAF---- 248 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAA-LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFIS--DLPIQLVAAF---- 248 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhh-cCccchhheeccchhhhccCCCCcEEEEeechhhhh--hCcHHHHHHH----
Confidence 346799999999999999999999554 23344445555554443333 456788999999975 5666677766
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHH-HHHHHHHhCCCCe-------EEEEEe
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKNYMDKF-------IILAVN 311 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~-~~~~l~~~~~~~p-------~ivV~N 311 (381)
+.++.....+|+++.|+|.++|...+.++ ++..+... +.| ++=|-|
T Consensus 249 ------------------------~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i--gv~~~pkl~~mieVdn 302 (410)
T KOG0410|consen 249 ------------------------QATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQI--GVPSEPKLQNMIEVDN 302 (410)
T ss_pred ------------------------HHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhc--CCCcHHHHhHHHhhcc
Confidence 46778888999999999999988777755 55555554 443 566888
Q ss_pred CccCCCcccchhHHHhhCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 312 KCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 312 K~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
|+|..+.....+ ....+.+||++|+|++++++.+...+.....
T Consensus 303 kiD~e~~~~e~E------~n~~v~isaltgdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 303 KIDYEEDEVEEE------KNLDVGISALTGDGLEELLKAEETKVASETT 345 (410)
T ss_pred ccccccccCccc------cCCccccccccCccHHHHHHHHHHHhhhhhe
Confidence 888765432221 1126899999999999999999988775543
No 249
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.52 E-value=3.8e-14 Score=117.21 Aligned_cols=112 Identities=20% Similarity=0.239 Sum_probs=70.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcc---cccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRA---IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~---~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
||+++|.+|||||||+++|++.... ......+.+..............+.+||++|.......+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~------------ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ------------ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH------------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc------------
Confidence 6899999999999999999987643 1111122222222222222233478999999965433222
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHH---HHHHHHhCCCCeEEEEEeCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEI---ADWLRKNYMDKFIILAVNKCE 314 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~---~~~l~~~~~~~p~ivV~NK~D 314 (381)
..+..+|++++|+|.+++.+... .++ +..+.....+.|+++|+||.|
T Consensus 69 --------------------------~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 --------------------------FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp --------------------------HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred --------------------------chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 23678999999999997544443 223 444444345799999999998
No 250
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.52 E-value=2.4e-13 Score=123.83 Aligned_cols=139 Identities=15% Similarity=0.057 Sum_probs=91.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccc--cceeeEEeC-----C--ceEEEEEcCCCCCccCCCchhhhhh
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRD--RMYGRSFWG-----E--HEFMLVDTGGVLNVSKSQPNIMEDL 235 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~--~~~~~~~~~-----~--~~~~liDTPG~~~~~~~~~~~~~~~ 235 (381)
+|+++|.+|||||||++++.+.... .... .|.. .....+.++ + ..+.+|||+|...+..
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~--~~~~-~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~--------- 69 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVL--GRPS-WTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKS--------- 69 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--CCCC-cceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHH---------
Confidence 7899999999999999999987532 2222 2221 111122222 2 3578999999965322
Q ss_pred hhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--------------
Q 016883 236 AITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-------------- 300 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-------------- 300 (381)
....++..+|++|+|+|.+++.+... ..|+..+...
T Consensus 70 -----------------------------l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~ 120 (202)
T cd04102 70 -----------------------------TRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDY 120 (202)
T ss_pred -----------------------------HHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 33356789999999999998766555 3466665442
Q ss_pred ------CCCCeEEEEEeCccCCCcccchhH------H--HhhCCCceEEEecCCCCCH
Q 016883 301 ------YMDKFIILAVNKCESPRKGIMQVS------E--FWSLGFSPLPISAISGTGT 344 (381)
Q Consensus 301 ------~~~~p~ivV~NK~Dl~~~~~~~~~------~--~~~~~~~~~~vSA~~g~gi 344 (381)
..+.|+++|+||+|+.+....... . ....+.+.+.++++.+..+
T Consensus 121 ~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~~ 178 (202)
T cd04102 121 DSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGRLL 178 (202)
T ss_pred cccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcccc
Confidence 136899999999999764311111 1 1345778888888875543
No 251
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.51 E-value=8.9e-14 Score=128.42 Aligned_cols=112 Identities=22% Similarity=0.289 Sum_probs=81.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCccccc---------------CCCCcccccceeeEEeC----------CceEEEEEcC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWG----------EHEFMLVDTG 219 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~---------------~~~~tt~~~~~~~~~~~----------~~~~~liDTP 219 (381)
+|+++|+.++|||||+++|+........ ...+.|.......+.+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7899999999999999999754211000 01123333322223332 4568899999
Q ss_pred CCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHH
Q 016883 220 GVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK 299 (381)
Q Consensus 220 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~ 299 (381)
|+.++. ..+..++..+|++++|+|+..+...++..+++....
T Consensus 82 G~~~f~--------------------------------------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~ 123 (222)
T cd01885 82 GHVDFS--------------------------------------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK 123 (222)
T ss_pred CccccH--------------------------------------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 997643 245577789999999999999988888888777766
Q ss_pred hCCCCeEEEEEeCccCC
Q 016883 300 NYMDKFIILAVNKCESP 316 (381)
Q Consensus 300 ~~~~~p~ivV~NK~Dl~ 316 (381)
. ++|+++|+||+|+.
T Consensus 124 ~--~~p~ilviNKiD~~ 138 (222)
T cd01885 124 E--RVKPVLVINKIDRL 138 (222)
T ss_pred c--CCCEEEEEECCCcc
Confidence 5 78999999999986
No 252
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.51 E-value=2e-13 Score=125.37 Aligned_cols=168 Identities=15% Similarity=0.201 Sum_probs=111.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccC-CCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVD-EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
+|+++|.+|+||||++|.|++......+. ....|.........+.+..+.++||||+.+.......+++++
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i-------- 73 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREI-------- 73 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHH--------
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHH--------
Confidence 78999999999999999999987644432 234566666666688899999999999977554333222222
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCC---CCeEEEEEeCccCCCccc
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM---DKFIILAVNKCESPRKGI 320 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~---~~p~ivV~NK~Dl~~~~~ 320 (381)
.+.........|+++||+... .++..+...++.+.+.+. -..++||+|..|...+..
T Consensus 74 -------------------~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 74 -------------------KRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp -------------------HHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred -------------------HHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 122223346699999999998 899999999988888652 357999999999776543
Q ss_pred chhH---------H-H-hhCCCceEEEecC------CCCCHHHHHHHHHHHhhhccc
Q 016883 321 MQVS---------E-F-WSLGFSPLPISAI------SGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 321 ~~~~---------~-~-~~~~~~~~~vSA~------~g~gi~~l~~~i~~~l~~~~~ 360 (381)
.+.. . . ..-+-.++.++.+ ....+.+|++.+.+.+.+...
T Consensus 134 ~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 134 LEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 2111 1 1 1224466666666 345688899999888887653
No 253
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.51 E-value=4e-14 Score=120.35 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=111.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCccccc--ceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDR--MYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~--~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~ 237 (381)
..++++++|..-||||||+-+.+..++. ...-+|... ....+.+.+ ..+.||||.|++++.....
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn---~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP-------- 80 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFN---CKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP-------- 80 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcc---hhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc--------
Confidence 3679999999999999999998876531 111122221 111223333 3478999999987654433
Q ss_pred hhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccC
Q 016883 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCES 315 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl 315 (381)
-|++..+.+++|+|.++.-+.+. ..|+..++..+ ..+.+++|.||+|+
T Consensus 81 ------------------------------IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDL 130 (218)
T KOG0088|consen 81 ------------------------------IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDL 130 (218)
T ss_pred ------------------------------eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccH
Confidence 36678999999999998766665 56887777754 46888999999999
Q ss_pred CCcccchhHH----HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 316 PRKGIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 316 ~~~~~~~~~~----~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
..+......+ ....+..++++||+.+.||.++|+.+...+.+.
T Consensus 131 EeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 131 EEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEH 177 (218)
T ss_pred HHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHH
Confidence 7654433222 234577899999999999999999988765543
No 254
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.51 E-value=1.2e-14 Score=120.24 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=106.7
Q ss_pred EEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCC
Q 016883 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (381)
Q Consensus 168 l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (381)
++|.+++|||.|+-++-...+..-.-.+....+.....+..++ .++++|||.|+++++.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrs------------------- 62 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRS------------------- 62 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhh-------------------
Confidence 6899999999998766554321111111111222222233334 3578999999987665
Q ss_pred CchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCcccchh
Q 016883 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKGIMQV 323 (381)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~~~~~ 323 (381)
.+..+++.+|.+++++|..+.-+..+ +.|+..++++. ..+.+.++.||||+..+.....
T Consensus 63 -------------------vt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ 123 (192)
T KOG0083|consen 63 -------------------VTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKR 123 (192)
T ss_pred -------------------hhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhcccc
Confidence 45578899999999999988766665 66888887753 2567789999999966432221
Q ss_pred ----HHHhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 324 ----SEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 324 ----~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.-...+++|+.++||++|-|++-.|-.|.+.+++..
T Consensus 124 ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 124 DDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKLK 163 (192)
T ss_pred chHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHhc
Confidence 112457899999999999999999999988776543
No 255
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.50 E-value=2e-14 Score=125.37 Aligned_cols=127 Identities=16% Similarity=0.146 Sum_probs=81.7
Q ss_pred CCCceeEcccCCCCCCCCCCCcccccccccccccc-CCCCCccchhHhhHHHHHHHHHhhhhhhhhhhhhhchhhhhhhh
Q 016883 67 PSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDES-DGQDFGIDVDALEREAKDAVREYSSLLSRQLIIQDETDDRKDSG 145 (381)
Q Consensus 67 ~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~-~~~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 145 (381)
..+|+++|+||+|+.+.+. ...+...|. ..+...+.+|+.++.+...+.+..... +. +........
T Consensus 28 ~~~p~IiVlNK~Dl~~~~~-------~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~---~~--~~~~~~~~~- 94 (155)
T cd01849 28 KGKKLILVLNKADLVPKEV-------LRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQ---TN--SNLKSYAKD- 94 (155)
T ss_pred CCCCEEEEEechhcCCHHH-------HHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHH---hH--HHHHHHHhc-
Confidence 4589999999999853211 111211222 234556888998888754444432211 10 000000000
Q ss_pred hhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCC
Q 016883 146 KKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (381)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~ 221 (381)
.......+++++|.+|+|||||+|+|.+.....++..+++|++.....+ +..+.++||||+
T Consensus 95 ------------~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 95 ------------GKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ------------cccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 0012356899999999999999999999877778888999999876544 356899999996
No 256
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=6.2e-14 Score=143.26 Aligned_cols=159 Identities=25% Similarity=0.282 Sum_probs=115.8
Q ss_pred CCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe------------------CCceEEEEEcCCC
Q 016883 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW------------------GEHEFMLVDTGGV 221 (381)
Q Consensus 160 ~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~------------------~~~~~~liDTPG~ 221 (381)
+.+.+.|+++|+...|||-|+..+.+.++ +-+...|.|.......+.. .-..+.+|||||+
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNV-qegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNV-QEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhcccc-ccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 34678999999999999999999998764 4455555554432221111 1235789999999
Q ss_pred CCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhC
Q 016883 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (381)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~ 301 (381)
..+...+. +....||++|+|+|..+++..+..+-+..|+..
T Consensus 551 EsFtnlRs--------------------------------------rgsslC~~aIlvvdImhGlepqtiESi~lLR~r- 591 (1064)
T KOG1144|consen 551 ESFTNLRS--------------------------------------RGSSLCDLAILVVDIMHGLEPQTIESINLLRMR- 591 (1064)
T ss_pred hhhhhhhh--------------------------------------ccccccceEEEEeehhccCCcchhHHHHHHHhc-
Confidence 87654222 344689999999999999999999999999988
Q ss_pred CCCeEEEEEeCccCCC-------cccchhH--------------------HH---------hhC------CCceEEEecC
Q 016883 302 MDKFIILAVNKCESPR-------KGIMQVS--------------------EF---------WSL------GFSPLPISAI 339 (381)
Q Consensus 302 ~~~p~ivV~NK~Dl~~-------~~~~~~~--------------------~~---------~~~------~~~~~~vSA~ 339 (381)
+.|+||.+||+|.+= ..+...+ ++ +.. -+.++|+||.
T Consensus 592 -ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~ 670 (1064)
T KOG1144|consen 592 -KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAI 670 (1064)
T ss_pred -CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccc
Confidence 999999999999641 1111100 00 000 1257999999
Q ss_pred CCCCHHHHHHHHHHHhhhcc
Q 016883 340 SGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 340 ~g~gi~~l~~~i~~~l~~~~ 359 (381)
+|+||.+|+-+|.+..+...
T Consensus 671 sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 671 SGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred cCCCcHHHHHHHHHHHHHHH
Confidence 99999999999998877654
No 257
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.50 E-value=3.3e-13 Score=129.14 Aligned_cols=125 Identities=13% Similarity=0.162 Sum_probs=89.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|.+|+||||++|+|++...+.++....++..........++..+.+|||||+.+....+...+
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~---------- 107 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAV---------- 107 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHH----------
Confidence 5699999999999999999999988766777666655555555556788999999999986422111110
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHh--ccccEEEEEEeCCC-CCChhHHHHHHHHHHhCC---CCeEEEEEeCccCC
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQA-GLTAADEEIADWLRKNYM---DKFIILAVNKCESP 316 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~d~ii~VvD~~~-~~~~~~~~~~~~l~~~~~---~~p~ivV~NK~Dl~ 316 (381)
.....++ ...|+++||...+. ..+..+..+++.+.+.+. -.++|+|+|++|..
T Consensus 108 ---------------------~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 108 ---------------------NIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred ---------------------HHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 1111112 36999999965443 577777888888887552 36899999999977
Q ss_pred Cc
Q 016883 317 RK 318 (381)
Q Consensus 317 ~~ 318 (381)
+.
T Consensus 167 ~p 168 (313)
T TIGR00991 167 PP 168 (313)
T ss_pred CC
Confidence 43
No 258
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.49 E-value=5e-13 Score=137.94 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=82.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC--Ccc---ccc----------C------CCCcccccceeeEEeCCceEEEEEcCCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG--NRA---IVV----------D------EPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~--~~~---~~~----------~------~~~tt~~~~~~~~~~~~~~~~liDTPG~ 221 (381)
..+++++|++|+|||||+++|+.. ... .+. + ..+.+.......+.+.+..+.+|||||+
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~ 90 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGH 90 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCCh
Confidence 449999999999999999998632 111 111 0 0122233333456677888999999999
Q ss_pred CCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhC
Q 016883 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (381)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~ 301 (381)
.++. ..+..++..+|++++|+|+..+...+...+++.....
T Consensus 91 ~df~--------------------------------------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~- 131 (527)
T TIGR00503 91 EDFS--------------------------------------EDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR- 131 (527)
T ss_pred hhHH--------------------------------------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-
Confidence 6432 2455677899999999999988877777777766655
Q ss_pred CCCeEEEEEeCccCC
Q 016883 302 MDKFIILAVNKCESP 316 (381)
Q Consensus 302 ~~~p~ivV~NK~Dl~ 316 (381)
++|+++++||+|+.
T Consensus 132 -~~PiivviNKiD~~ 145 (527)
T TIGR00503 132 -DTPIFTFMNKLDRD 145 (527)
T ss_pred -CCCEEEEEECcccc
Confidence 89999999999974
No 259
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.49 E-value=1.1e-14 Score=139.59 Aligned_cols=143 Identities=23% Similarity=0.190 Sum_probs=95.1
Q ss_pred cccccccccccccccCCCCchHHHHhhhcCC-CCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhH
Q 016883 37 RSFSPQLLSLSLHKHYPLPLPLTRHLRSLSP-SNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALER 115 (381)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~ 115 (381)
+...-.+++++.+.|.+.+..+++|+..+.. .+|+++|+||+||.+..+ ...+...|...+++.+.+|+.++
T Consensus 77 anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~-------~~~~~~~~~~~g~~v~~vSA~~g 149 (287)
T cd01854 77 ANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEE-------EELELVEALALGYPVLAVSAKTG 149 (287)
T ss_pred EeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHH-------HHHHHHHHHhCCCeEEEEECCCC
Confidence 3333358888888888778899999876543 589999999999864311 11112334446678888999888
Q ss_pred HHHHHHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccC--
Q 016883 116 EAKDAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVD-- 193 (381)
Q Consensus 116 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~-- 193 (381)
.+...+... + .+ ..++++|++|||||||+|+|.+.....++.
T Consensus 150 ~gi~~L~~~---L------------------~~---------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~ 193 (287)
T cd01854 150 EGLDELREY---L------------------KG---------------KTSVLVGQSGVGKSTLINALLPDLDLATGEIS 193 (287)
T ss_pred ccHHHHHhh---h------------------cc---------------ceEEEECCCCCCHHHHHHHHhchhhcccccee
Confidence 873322221 1 01 178999999999999999999875433332
Q ss_pred -----CCCcccccceeeEEeCCceEEEEEcCCCCCcc
Q 016883 194 -----EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (381)
Q Consensus 194 -----~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~ 225 (381)
..+||++.+...+.. ...++||||+.++.
T Consensus 194 ~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~~ 227 (287)
T cd01854 194 EKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREFG 227 (287)
T ss_pred ccCCCCCcccceEEEEEcCC---CCEEEECCCCCccC
Confidence 234566555433321 23899999997654
No 260
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.48 E-value=2.3e-14 Score=142.13 Aligned_cols=169 Identities=18% Similarity=0.125 Sum_probs=100.2
Q ss_pred cccccCCCCchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhh----------HH
Q 016883 47 SLHKHYPLPLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALE----------RE 116 (381)
Q Consensus 47 ~~~~~~~~~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~----------~~ 116 (381)
|=+.-.--+++|++|+....++|..||++||+||.+.+.. ..|.+.+.......+..+|.. ++
T Consensus 184 ARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr-------~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e 256 (562)
T KOG1424|consen 184 ARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQR-------VAWAEYFRQNNIPVVFFSALAATEQLESKVLKE 256 (562)
T ss_pred cCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHH-------HHHHHHHHhcCceEEEEecccccccccccchhh
Confidence 3344445689999999999999999999999999765322 233344444444455555443 11
Q ss_pred HHHHHHHhhhhhhhhhhhhhc-----------hhhhhhhhhhccccccccCCCCC-CCCCEEEEEcCCCCChhHHHHHHh
Q 016883 117 AKDAVREYSSLLSRQLIIQDE-----------TDDRKDSGKKQKKRKTTIGNVPE-HLLPRVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 117 ~~~~l~~~~~~l~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~G~~gvGKSSLin~L~ 184 (381)
.++.................+ ....++....... .......+. ....+|++||.|||||||+||+|.
T Consensus 257 ~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~-~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLv 335 (562)
T KOG1424|consen 257 DRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISA-MEPTPTGERYKDVVTVGFVGYPNVGKSSTINALV 335 (562)
T ss_pred hhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhc-cccCCCCcCCCceeEEEeecCCCCchhHHHHHHh
Confidence 111111111111000000000 0000000000000 000011111 124799999999999999999999
Q ss_pred CCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccC
Q 016883 185 GGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (381)
Q Consensus 185 ~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~ 226 (381)
|.+...++.+||.|+|.++..+ ...++++||||+.-...
T Consensus 336 G~KkVsVS~TPGkTKHFQTi~l---s~~v~LCDCPGLVfPSf 374 (562)
T KOG1424|consen 336 GRKKVSVSSTPGKTKHFQTIFL---SPSVCLCDCPGLVFPSF 374 (562)
T ss_pred cCceeeeecCCCCcceeEEEEc---CCCceecCCCCccccCC
Confidence 9999999999999999998665 45679999999865443
No 261
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.48 E-value=6.1e-13 Score=126.88 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=84.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccC--------CCCcc-cccceeeEEeCC--ceEEEEEcCCCCCccCCCchh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVD--------EPGVT-RDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNI 231 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~--------~~~tt-~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~ 231 (381)
.++|+++|.+|+|||||+|+|++........ ...|+ .......+..+| ..+.+|||||+.+.... ...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~-~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINN-SDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccc-hhh
Confidence 4589999999999999999999886543322 11121 222222334444 35889999999875331 111
Q ss_pred hhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHH--H--HHh--ccccEEEEEEeCCC-CCChhHHHHHHHHHHhCCCC
Q 016883 232 MEDLAITTTIGMEGIPLATREAAVARMPSMIERQA--T--AAI--EESCVIIFLVDGQA-GLTAADEEIADWLRKNYMDK 304 (381)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~l--~~~d~ii~VvD~~~-~~~~~~~~~~~~l~~~~~~~ 304 (381)
.+.+ .+.....+..++.... . ..+ ..+|+++|+++.+. ++...+.++++.+.. .+
T Consensus 83 ~~~i---------------~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~---~v 144 (276)
T cd01850 83 WKPI---------------VDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK---RV 144 (276)
T ss_pred HHHH---------------HHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc---cC
Confidence 1111 0001111112221111 0 011 24899999999874 778888888888875 78
Q ss_pred eEEEEEeCccCCCcc
Q 016883 305 FIILAVNKCESPRKG 319 (381)
Q Consensus 305 p~ivV~NK~Dl~~~~ 319 (381)
|+++|+||+|+....
T Consensus 145 ~vi~VinK~D~l~~~ 159 (276)
T cd01850 145 NIIPVIAKADTLTPE 159 (276)
T ss_pred CEEEEEECCCcCCHH
Confidence 999999999997643
No 262
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.48 E-value=2e-13 Score=138.42 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=97.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCc------------------------c------cccCCCCcccccceeeEEeCCce
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNR------------------------A------IVVDEPGVTRDRMYGRSFWGEHE 212 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~------------------------~------~~~~~~~tt~~~~~~~~~~~~~~ 212 (381)
..+++++|+.++|||||+.+|+...- + ......+.|.+.....+..++..
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 86 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYY 86 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEE
Confidence 45899999999999999998874210 0 00111245666655566677788
Q ss_pred EEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCC-----
Q 016883 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT----- 287 (381)
Q Consensus 213 ~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~----- 287 (381)
+.++||||+.++. +.....+..+|++++|+|+..+..
T Consensus 87 i~liDtPGh~df~--------------------------------------~~~~~g~~~aD~aIlVVda~~G~~e~g~~ 128 (447)
T PLN00043 87 CTVIDAPGHRDFI--------------------------------------KNMITGTSQADCAVLIIDSTTGGFEAGIS 128 (447)
T ss_pred EEEEECCCHHHHH--------------------------------------HHHHhhhhhccEEEEEEEcccCceecccC
Confidence 9999999997532 244566789999999999987521
Q ss_pred --hhHHHHHHHHHHhCCCCe-EEEEEeCccCCCccc--------chhHH-H-hhC-----CCceEEEecCCCCCHHH
Q 016883 288 --AADEEIADWLRKNYMDKF-IILAVNKCESPRKGI--------MQVSE-F-WSL-----GFSPLPISAISGTGTGE 346 (381)
Q Consensus 288 --~~~~~~~~~l~~~~~~~p-~ivV~NK~Dl~~~~~--------~~~~~-~-~~~-----~~~~~~vSA~~g~gi~~ 346 (381)
.+.++.+..+... ++| +|+++||+|+..... .+... + ... +.+++++||++|+|+.+
T Consensus 129 ~~~qT~eh~~~~~~~--gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 129 KDGQTREHALLAFTL--GVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CCchHHHHHHHHHHc--CCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 3555666665555 775 688899999863211 11111 1 112 36799999999999864
No 263
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.48 E-value=8.3e-13 Score=120.84 Aligned_cols=155 Identities=21% Similarity=0.140 Sum_probs=104.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC--CceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||++++.+....... .+..+........... ...+.+|||+|+.+.+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~--------------- 69 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY-PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRS--------------- 69 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccC-CCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHH---------------
Confidence 59999999999999999999988643211 1111211111111111 34578999999976432
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC--CCChhHHHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA--GLTAADEEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~--~~~~~~~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
....+...++++++|+|... ........|...+.... .+.|+++|.||+|+...
T Consensus 70 -----------------------~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 70 -----------------------LRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred -----------------------HHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 34466789999999999886 23333356776777654 36999999999999875
Q ss_pred ccc------------hhHH--H---h--hCCCceEEEecC--CCCCHHHHHHHHHHHhhh
Q 016883 319 GIM------------QVSE--F---W--SLGFSPLPISAI--SGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~~------------~~~~--~---~--~~~~~~~~vSA~--~g~gi~~l~~~i~~~l~~ 357 (381)
... .... . . .....++.+|++ ++.|+.+++..+...+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 127 QSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred hhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHH
Confidence 321 1110 0 0 113348999999 999999999998887754
No 264
>PTZ00258 GTP-binding protein; Provisional
Probab=99.48 E-value=1e-12 Score=130.09 Aligned_cols=89 Identities=24% Similarity=0.223 Sum_probs=71.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC-----------------ceEEEEEcCCCCCcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-----------------HEFMLVDTGGVLNVS 225 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~~~liDTPG~~~~~ 225 (381)
..+|+++|.||||||||+|+|++.. ..++++|+||.+...+.+.+.+ .++.++||||+....
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 4589999999999999999998876 5889999999998888776653 248999999998644
Q ss_pred CCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCC
Q 016883 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~ 283 (381)
.... -+...++..++.+|++++|+|+.
T Consensus 100 ~~g~-------------------------------gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGE-------------------------------GLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchh-------------------------------HHHHHHHHHHHHCCEEEEEEeCC
Confidence 3222 12346677889999999999974
No 265
>PRK00098 GTPase RsgA; Reviewed
Probab=99.47 E-value=2.4e-14 Score=138.13 Aligned_cols=139 Identities=19% Similarity=0.083 Sum_probs=92.4
Q ss_pred cccccccccccCCCCchHHHHhhhcCC-CCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHH
Q 016883 41 PQLLSLSLHKHYPLPLPLTRHLRSLSP-SNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKD 119 (381)
Q Consensus 41 ~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~ 119 (381)
-.++++++..|.+....+.+|+..+.. ..|++||+||+|+.+.. + ...++.+.|...+++.+.+|+.++++..
T Consensus 83 ~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~-~-----~~~~~~~~~~~~g~~v~~vSA~~g~gi~ 156 (298)
T PRK00098 83 QAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDL-E-----EARELLALYRAIGYDVLELSAKEGEGLD 156 (298)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCH-H-----HHHHHHHHHHHCCCeEEEEeCCCCccHH
Confidence 347788887776666778899865544 48999999999985211 0 1112224455556778889998887733
Q ss_pred HHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCC----
Q 016883 120 AVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP---- 195 (381)
Q Consensus 120 ~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~---- 195 (381)
.+.+. + .+ ..++++|++|||||||+|+|.+.....++..+
T Consensus 157 ~L~~~---l------------------~g---------------k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~ 200 (298)
T PRK00098 157 ELKPL---L------------------AG---------------KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALG 200 (298)
T ss_pred HHHhh---c------------------cC---------------ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCC
Confidence 22221 1 11 17899999999999999999987654444433
Q ss_pred ---CcccccceeeEEeCCceEEEEEcCCCCCc
Q 016883 196 ---GVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (381)
Q Consensus 196 ---~tt~~~~~~~~~~~~~~~~liDTPG~~~~ 224 (381)
+||++.....+ . ....++||||+...
T Consensus 201 ~G~htT~~~~~~~~--~-~~~~~~DtpG~~~~ 229 (298)
T PRK00098 201 RGKHTTTHVELYDL--P-GGGLLIDTPGFSSF 229 (298)
T ss_pred CCCcccccEEEEEc--C-CCcEEEECCCcCcc
Confidence 46655544333 2 23489999999864
No 266
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.47 E-value=8.6e-13 Score=129.50 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=122.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcc-----c----------ccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-----I----------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~-----~----------~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 227 (381)
..+|+++.+...|||||++.|+...-. . .....|.|.-.....+.+++..+.++||||+.++..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG- 83 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG- 83 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc-
Confidence 348999999999999999999865311 1 111235665555556788899999999999998765
Q ss_pred CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEE
Q 016883 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (381)
...+.++-+|.+++++|+.++...+.+-+++...+. +.+-|
T Consensus 84 -------------------------------------EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~--gL~PI 124 (603)
T COG1217 84 -------------------------------------EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL--GLKPI 124 (603)
T ss_pred -------------------------------------hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc--CCCcE
Confidence 333566789999999999999999998888877776 88888
Q ss_pred EEEeCccCCCcccchhH----HH--------hhCCCceEEEecCCCC----------CHHHHHHHHHHHhhhccc
Q 016883 308 LAVNKCESPRKGIMQVS----EF--------WSLGFSPLPISAISGT----------GTGELLDLVCSELKKVEV 360 (381)
Q Consensus 308 vV~NK~Dl~~~~~~~~~----~~--------~~~~~~~~~vSA~~g~----------gi~~l~~~i~~~l~~~~~ 360 (381)
+|+||+|.......... .+ ..+++|++..||+.|. ++.-||+.|.++++....
T Consensus 125 VVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 125 VVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 99999999875433222 11 3467899999999875 678899999999986654
No 267
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.46 E-value=3.8e-14 Score=125.85 Aligned_cols=57 Identities=35% Similarity=0.465 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCC
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~ 221 (381)
...+++++|.||+|||||+|+|.+...+.++..||+|++.+...+ +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 356999999999999999999999988889999999998776543 356899999996
No 268
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=5.2e-14 Score=119.73 Aligned_cols=153 Identities=18% Similarity=0.211 Sum_probs=103.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCC-CcccccceeeEEeC-------C----ceEEEEEcCCCCCccCCCchh
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGRSFWG-------E----HEFMLVDTGGVLNVSKSQPNI 231 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~-~tt~~~~~~~~~~~-------~----~~~~liDTPG~~~~~~~~~~~ 231 (381)
++.+.+|.+||||||++-+.+...+. +... ....+.....+.++ | ..+++|||+|+++++.
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~--~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS----- 82 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFN--TQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS----- 82 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCccc--ceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH-----
Confidence 35678899999999999888766421 1110 00111111111111 1 1367999999987654
Q ss_pred hhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-C-CCCeEEE
Q 016883 232 MEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-Y-MDKFIIL 308 (381)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~-~~~p~iv 308 (381)
.+..+++.|-..++++|.++.-+..+ +.|+..++.. + .+.-+++
T Consensus 83 ---------------------------------LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivl 129 (219)
T KOG0081|consen 83 ---------------------------------LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVL 129 (219)
T ss_pred ---------------------------------HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEE
Confidence 45567788999999999987555554 5677777653 2 3455778
Q ss_pred EEeCccCCCcccchhHH----HhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 309 AVNKCESPRKGIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 309 V~NK~Dl~~~~~~~~~~----~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
+.||+|+.+.......+ ...+++|+|++||-+|.|+++..+.+...+.
T Consensus 130 cGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 130 CGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVM 181 (219)
T ss_pred EcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHH
Confidence 89999998765443322 2467999999999999999998887766554
No 269
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.46 E-value=6.8e-14 Score=133.52 Aligned_cols=138 Identities=23% Similarity=0.274 Sum_probs=87.7
Q ss_pred CchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhhhhhhhhh
Q 016883 55 PLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSLLSRQLII 134 (381)
Q Consensus 55 ~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~~ 134 (381)
...+.+++ ..+|+++|+||+|+.+... ...+.+.+...+...+.+|+.++.+...+.+....+...
T Consensus 39 ~~~i~~~l----~~kp~IiVlNK~DL~~~~~-------~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~--- 104 (276)
T TIGR03596 39 NPMIDEIR----GNKPRLIVLNKADLADPAV-------TKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKE--- 104 (276)
T ss_pred ChhHHHHH----CCCCEEEEEEccccCCHHH-------HHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHH---
Confidence 34566665 3589999999999853211 112222333334456788888887754444332222110
Q ss_pred hhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEE
Q 016883 135 QDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFM 214 (381)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~ 214 (381)
.... .+.+ + ......+++++|.||||||||+|+|.+.....++..+++|+..+...+ +..+.
T Consensus 105 ---~~~~----~~~~-~-------~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~ 166 (276)
T TIGR03596 105 ---KNEK----LKAK-G-------LKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLE 166 (276)
T ss_pred ---hhhh----hhhc-c-------CCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEE
Confidence 0000 0000 0 012256899999999999999999999887888999999998765443 34689
Q ss_pred EEEcCCCCCc
Q 016883 215 LVDTGGVLNV 224 (381)
Q Consensus 215 liDTPG~~~~ 224 (381)
++||||+...
T Consensus 167 l~DtPG~~~~ 176 (276)
T TIGR03596 167 LLDTPGILWP 176 (276)
T ss_pred EEECCCcccC
Confidence 9999999653
No 270
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.46 E-value=9.6e-14 Score=133.21 Aligned_cols=138 Identities=22% Similarity=0.282 Sum_probs=87.3
Q ss_pred chHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhhhhhhhhhh
Q 016883 56 LPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSLLSRQLIIQ 135 (381)
Q Consensus 56 ~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~~~ 135 (381)
..+.+++. .+|+++|+||+|+.+.. ....+.+.+...+...+.+|+.++.+...+.+....+...
T Consensus 43 ~~l~~~~~----~kp~iiVlNK~DL~~~~-------~~~~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~---- 107 (287)
T PRK09563 43 PMIDKIIG----NKPRLLILNKSDLADPE-------VTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKE---- 107 (287)
T ss_pred hhHHHHhC----CCCEEEEEEchhcCCHH-------HHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHH----
Confidence 34555443 68999999999985321 1112222232223456778888877744444332222110
Q ss_pred hchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEE
Q 016883 136 DETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFML 215 (381)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~l 215 (381)
.....+.+ .......+++++|.||||||||+|+|.+...+.+++.+|+|++.+...+ +..+.+
T Consensus 108 ------~~~~~~~~--------~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l 170 (287)
T PRK09563 108 ------KNERRKAK--------GMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL---GKGLEL 170 (287)
T ss_pred ------HHhhhhhc--------ccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe---CCcEEE
Confidence 00000000 0112356899999999999999999999988889999999998865333 456899
Q ss_pred EEcCCCCCcc
Q 016883 216 VDTGGVLNVS 225 (381)
Q Consensus 216 iDTPG~~~~~ 225 (381)
+||||+....
T Consensus 171 ~DtPGi~~~~ 180 (287)
T PRK09563 171 LDTPGILWPK 180 (287)
T ss_pred EECCCcCCCC
Confidence 9999997544
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.44 E-value=6.1e-13 Score=141.81 Aligned_cols=109 Identities=21% Similarity=0.255 Sum_probs=81.7
Q ss_pred EcCCCCChhHHHHHHhCCCcc--c---------cc------CCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchh
Q 016883 169 VGRPNVGKSALFNRLVGGNRA--I---------VV------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNI 231 (381)
Q Consensus 169 ~G~~gvGKSSLin~L~~~~~~--~---------~~------~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~ 231 (381)
+|++|+|||||+++|+...-. . +. ...+.|.......+.+.+..+.+|||||+.++.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~------ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFT------ 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHH------
Confidence 599999999999999643211 0 00 113455555556677888899999999996421
Q ss_pred hhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEe
Q 016883 232 MEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVN 311 (381)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~N 311 (381)
..+..++..+|++++|+|++.+.......++..+... ++|+++|+|
T Consensus 75 --------------------------------~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~--~~p~iiv~N 120 (668)
T PRK12740 75 --------------------------------GEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY--GVPRIIFVN 120 (668)
T ss_pred --------------------------------HHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc--CCCEEEEEE
Confidence 2445667889999999999988888777777777665 899999999
Q ss_pred CccCCC
Q 016883 312 KCESPR 317 (381)
Q Consensus 312 K~Dl~~ 317 (381)
|+|+..
T Consensus 121 K~D~~~ 126 (668)
T PRK12740 121 KMDRAG 126 (668)
T ss_pred CCCCCC
Confidence 999864
No 272
>PLN00023 GTP-binding protein; Provisional
Probab=99.43 E-value=1.2e-12 Score=126.05 Aligned_cols=122 Identities=21% Similarity=0.174 Sum_probs=82.1
Q ss_pred CCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCc-ccccceeeEEeC---------------CceEEEEEcCC
Q 016883 157 NVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGV-TRDRMYGRSFWG---------------EHEFMLVDTGG 220 (381)
Q Consensus 157 ~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~t-t~~~~~~~~~~~---------------~~~~~liDTPG 220 (381)
..+.....+|+++|..|||||||++++.+.... .....| +.......+.++ ...+.||||+|
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~--~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG 92 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSI--ARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG 92 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcc--cccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC
Confidence 345556789999999999999999999987532 122111 111111222322 13478999999
Q ss_pred CCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHH
Q 016883 221 VLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK 299 (381)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~ 299 (381)
...+.. ....++..+|++|+|+|.++..+..+ ..|+..+..
T Consensus 93 qErfrs--------------------------------------L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~ 134 (334)
T PLN00023 93 HERYKD--------------------------------------CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAA 134 (334)
T ss_pred Chhhhh--------------------------------------hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 976543 23356789999999999998555544 346666665
Q ss_pred hC-------------CCCeEEEEEeCccCCCc
Q 016883 300 NY-------------MDKFIILAVNKCESPRK 318 (381)
Q Consensus 300 ~~-------------~~~p~ivV~NK~Dl~~~ 318 (381)
.. .++|+++|+||+|+...
T Consensus 135 ~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 135 TGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hcccccccccccccCCCCcEEEEEECcccccc
Confidence 31 24899999999999654
No 273
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=7.2e-13 Score=129.08 Aligned_cols=147 Identities=22% Similarity=0.227 Sum_probs=102.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCC------------------------------cccccCCCCcccccceeeEEeCCc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGN------------------------------RAIVVDEPGVTRDRMYGRSFWGEH 211 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~------------------------------~~~~~~~~~tt~~~~~~~~~~~~~ 211 (381)
...+++|+|+.++|||||+-+|+-.. ........|.|.+.....+..+..
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 35689999999999999999987541 001112245666666666777777
Q ss_pred eEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC------
Q 016883 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------ 285 (381)
Q Consensus 212 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~------ 285 (381)
.+.|+|+||+.++-. .......+||+.|+|+|++.+
T Consensus 86 ~~tIiDaPGHrdFvk--------------------------------------nmItGasqAD~aVLVV~a~~~efE~g~ 127 (428)
T COG5256 86 NFTIIDAPGHRDFVK--------------------------------------NMITGASQADVAVLVVDARDGEFEAGF 127 (428)
T ss_pred eEEEeeCCchHHHHH--------------------------------------HhhcchhhccEEEEEEECCCCcccccc
Confidence 899999999876432 334556789999999999987
Q ss_pred -CChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccc--h----hH-HH------hhCCCceEEEecCCCCCHHHH
Q 016883 286 -LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM--Q----VS-EF------WSLGFSPLPISAISGTGTGEL 347 (381)
Q Consensus 286 -~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~--~----~~-~~------~~~~~~~~~vSA~~g~gi~~l 347 (381)
...++++.+-..+-. .-..+|+++||+|+.+-... + .. .+ ...+++++||||.+|.|+.+-
T Consensus 128 ~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 128 GVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccCCchhHHHHHHHhc-CCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 566777766555544 24667888999999862211 1 11 11 112467999999999998763
No 274
>PTZ00099 rab6; Provisional
Probab=99.41 E-value=1.8e-12 Score=115.54 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=66.4
Q ss_pred HHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCcccch---hHH-HhhCCCceEEEecCCC
Q 016883 268 AAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRKGIMQ---VSE-FWSLGFSPLPISAISG 341 (381)
Q Consensus 268 ~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~~~~~---~~~-~~~~~~~~~~vSA~~g 341 (381)
.++..+|++++|+|++++.+..+ ..|+..+... ....|+++|+||+|+....... ... ....+..++++||++|
T Consensus 48 ~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g 127 (176)
T PTZ00099 48 SYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAG 127 (176)
T ss_pred HHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 46789999999999998544443 3455555443 2478999999999996432111 111 1234667899999999
Q ss_pred CCHHHHHHHHHHHhhhcc
Q 016883 342 TGTGELLDLVCSELKKVE 359 (381)
Q Consensus 342 ~gi~~l~~~i~~~l~~~~ 359 (381)
+|++++|++|.+.+.+..
T Consensus 128 ~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 128 HNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCHHHHHHHHHHHHHhcc
Confidence 999999999999987644
No 275
>PRK13768 GTPase; Provisional
Probab=99.40 E-value=3.3e-12 Score=120.37 Aligned_cols=85 Identities=21% Similarity=0.209 Sum_probs=60.9
Q ss_pred ccEEEEEEeCCCCCChhHHHHHHHHH---HhCCCCeEEEEEeCccCCCcccchhHH------------------------
Q 016883 273 SCVIIFLVDGQAGLTAADEEIADWLR---KNYMDKFIILAVNKCESPRKGIMQVSE------------------------ 325 (381)
Q Consensus 273 ~d~ii~VvD~~~~~~~~~~~~~~~l~---~~~~~~p~ivV~NK~Dl~~~~~~~~~~------------------------ 325 (381)
++++++|+|+....+..+......+. ....++|+++|+||+|+.+....+...
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 208 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLS 208 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHH
Confidence 89999999998766666644433322 112389999999999998754322211
Q ss_pred ------HhhCC--CceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 326 ------FWSLG--FSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 326 ------~~~~~--~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+...+ .+++++||++++|+++|+++|.+.+.-
T Consensus 209 ~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 209 LELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred HHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 01112 478999999999999999999998853
No 276
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.40 E-value=5.6e-12 Score=123.58 Aligned_cols=88 Identities=30% Similarity=0.317 Sum_probs=71.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc-----------------eEEEEEcCCCCCccC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-----------------EFMLVDTGGVLNVSK 226 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~-----------------~~~liDTPG~~~~~~ 226 (381)
.+|+++|.||||||||+|+|++.. +.++++|+||.+...+.+.+.+. .+.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 489999999999999999999987 68899999999988777766552 489999999986433
Q ss_pred CCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCC
Q 016883 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~ 283 (381)
... -+...++..++.||++++|+|+.
T Consensus 82 ~g~-------------------------------glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGE-------------------------------GLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHH-------------------------------HHHHHHHHHHHhCCEEEEEEeCC
Confidence 221 12346777889999999999984
No 277
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.40 E-value=2.5e-12 Score=140.38 Aligned_cols=142 Identities=18% Similarity=0.204 Sum_probs=102.6
Q ss_pred CChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC------------------ceEEEEEcCCCCCccCCCchhhhhh
Q 016883 174 VGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE------------------HEFMLVDTGGVLNVSKSQPNIMEDL 235 (381)
Q Consensus 174 vGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~------------------~~~~liDTPG~~~~~~~~~~~~~~~ 235 (381)
++||||+.+|.+..+ ..+...|.|++.....+..+. ..+.||||||+..+..
T Consensus 472 ~~KTtLLD~iR~t~v-~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~--------- 541 (1049)
T PRK14845 472 VHNTTLLDKIRKTRV-AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTS--------- 541 (1049)
T ss_pred cccccHHHHHhCCCc-ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHH---------
Confidence 459999999999875 444556778777665554431 1379999999865322
Q ss_pred hhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccC
Q 016883 236 AITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCES 315 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl 315 (381)
.....+..+|++++|+|+++++..++.+.+..+... ++|+++|+||+|+
T Consensus 542 -----------------------------lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~--~iPiIVViNKiDL 590 (1049)
T PRK14845 542 -----------------------------LRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY--KTPFVVAANKIDL 590 (1049)
T ss_pred -----------------------------HHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc--CCCEEEEEECCCC
Confidence 112345679999999999999888888888888776 8999999999998
Q ss_pred CCccc------------------chhHH---------H---------------hhCCCceEEEecCCCCCHHHHHHHHHH
Q 016883 316 PRKGI------------------MQVSE---------F---------------WSLGFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 316 ~~~~~------------------~~~~~---------~---------------~~~~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
..... .+... + +....++++|||++|+|+++|+++|..
T Consensus 591 ~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 591 IPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred ccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 64211 00000 0 112458899999999999999999875
Q ss_pred Hhh
Q 016883 354 ELK 356 (381)
Q Consensus 354 ~l~ 356 (381)
..+
T Consensus 671 l~~ 673 (1049)
T PRK14845 671 LAQ 673 (1049)
T ss_pred hhH
Confidence 544
No 278
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.40 E-value=2.8e-13 Score=120.08 Aligned_cols=125 Identities=25% Similarity=0.215 Sum_probs=80.5
Q ss_pred CCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhhhhhhhhhhhchhhhhhhhhh
Q 016883 68 SNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSLLSRQLIIQDETDDRKDSGKK 147 (381)
Q Consensus 68 ~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~ 147 (381)
.+|+++|+||+|+.+.+ ....+.+.+...+...+.+|+.++++...+....... +.. ......
T Consensus 46 ~k~~ilVlNK~Dl~~~~-------~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~---l~~-------~~~~~~ 108 (171)
T cd01856 46 NKPRIIVLNKADLADPK-------KTKKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKL---LKD-------IEKLKA 108 (171)
T ss_pred CCCEEEEEehhhcCChH-------HHHHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHH---HHH-------Hhhhhh
Confidence 47999999999985321 1111213333344566788888887754444433222 110 000000
Q ss_pred ccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCC
Q 016883 148 QKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (381)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~ 221 (381)
.......++++++|.+|+|||||+|++.+.....++..+++|.+.+...+. ..+.++||||+
T Consensus 109 ---------~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 109 ---------KGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred ---------cccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 001123468999999999999999999998776778888999887765442 56899999997
No 279
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.40 E-value=3e-13 Score=121.76 Aligned_cols=118 Identities=19% Similarity=0.080 Sum_probs=74.5
Q ss_pred CCCceeEcccCCCCCCCCCCCcccccccccc--ccccCC---CCCccchhHhhHHHHHHHHHhhhhhhhhhhhhhchhhh
Q 016883 67 PSNDAVSSSNDDAFEDSPFEDEDDDAEYEDV--DDESDG---QDFGIDVDALEREAKDAVREYSSLLSRQLIIQDETDDR 141 (381)
Q Consensus 67 ~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~--~~~~~~---~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~~~~~~~~~ 141 (381)
..+|+++|+||+|+...+.. .+ ....+. ..+... ....+.+|+.++++...+. ..+...+.
T Consensus 60 ~~~~~ilV~NK~Dl~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~---~~l~~~l~-------- 125 (190)
T cd01855 60 GNNPVILVGNKIDLLPKDKN-LV--RIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELI---NAIKKLAK-------- 125 (190)
T ss_pred CCCcEEEEEEchhcCCCCCC-HH--HHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHH---HHHHHHhh--------
Confidence 45899999999999643221 00 001111 011111 1246778888887743333 22222111
Q ss_pred hhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCc--------ccccCCCCcccccceeeEEeCCceE
Q 016883 142 KDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNR--------AIVVDEPGVTRDRMYGRSFWGEHEF 213 (381)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~--------~~~~~~~~tt~~~~~~~~~~~~~~~ 213 (381)
...+++++|.+|||||||+|+|.+... ..++..+|||++.+...+. ..+
T Consensus 126 --------------------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~ 182 (190)
T cd01855 126 --------------------KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGK 182 (190)
T ss_pred --------------------cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---CCC
Confidence 023789999999999999999998532 3567788999988765542 257
Q ss_pred EEEEcCCC
Q 016883 214 MLVDTGGV 221 (381)
Q Consensus 214 ~liDTPG~ 221 (381)
.++||||+
T Consensus 183 ~~~DtPG~ 190 (190)
T cd01855 183 KLYDTPGI 190 (190)
T ss_pred EEEeCcCC
Confidence 99999996
No 280
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.39 E-value=5.9e-13 Score=115.93 Aligned_cols=126 Identities=25% Similarity=0.230 Sum_probs=80.5
Q ss_pred chHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhhhhhhhhhh
Q 016883 56 LPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSLLSRQLIIQ 135 (381)
Q Consensus 56 ~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~~~ 135 (381)
..+.+++... .+|+++|+||+|+...... ..+...+...+.+.+.+|+.++.+...+.+..... +.
T Consensus 31 ~~l~~~~~~~--~~p~iiv~NK~Dl~~~~~~-------~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~---~~-- 96 (156)
T cd01859 31 RKLERYVLEL--GKKLLIVLNKADLVPKEVL-------EKWKSIKESEGIPVVYVSAKERLGTKILRRTIKEL---AK-- 96 (156)
T ss_pred HHHHHHHHhC--CCcEEEEEEhHHhCCHHHH-------HHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHH---Hh--
Confidence 4556665433 4899999999998532111 11101112234566888998888844444332222 11
Q ss_pred hchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEE
Q 016883 136 DETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFML 215 (381)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~l 215 (381)
. .....+++++|.+|+|||||+|++.+.....+++.+++|.+.+.... +..+.+
T Consensus 97 --------~---------------~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~ 150 (156)
T cd01859 97 --------I---------------DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI---TSKIYL 150 (156)
T ss_pred --------h---------------cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc---CCCEEE
Confidence 0 01234889999999999999999998776667778887766543222 446899
Q ss_pred EEcCCC
Q 016883 216 VDTGGV 221 (381)
Q Consensus 216 iDTPG~ 221 (381)
|||||+
T Consensus 151 ~DtpGi 156 (156)
T cd01859 151 LDTPGV 156 (156)
T ss_pred EECcCC
Confidence 999996
No 281
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.38 E-value=8.9e-12 Score=115.45 Aligned_cols=133 Identities=18% Similarity=0.229 Sum_probs=91.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCc-ccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNR-AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~-~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
....|+++|.+|+|||||+|.|.+... .......++ .......+..+.++||||..
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-----i~i~~~~~~~i~~vDtPg~~------------------ 94 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-----ITVVTGKKRRLTFIECPNDI------------------ 94 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-----EEEEecCCceEEEEeCCchH------------------
Confidence 356899999999999999999987521 111222221 11123357788999999853
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEE-EEEeCccCCCcc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII-LAVNKCESPRKG 319 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~i-vV~NK~Dl~~~~ 319 (381)
..+...+..+|++++|+|+..+....+..++..+... +.|.+ +|+||+|+.++.
T Consensus 95 -----------------------~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~--g~p~vi~VvnK~D~~~~~ 149 (225)
T cd01882 95 -----------------------NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVH--GFPRVMGVLTHLDLFKKN 149 (225)
T ss_pred -----------------------HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHc--CCCeEEEEEeccccCCcH
Confidence 0233445789999999999988888888888888776 77854 599999997432
Q ss_pred c-ch----hHH--Hh---hCCCceEEEecCCCC
Q 016883 320 I-MQ----VSE--FW---SLGFSPLPISAISGT 342 (381)
Q Consensus 320 ~-~~----~~~--~~---~~~~~~~~vSA~~g~ 342 (381)
. .+ .+. +. ..+.+++++||++.-
T Consensus 150 ~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 150 KTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 1 11 111 11 134589999999874
No 282
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=7e-13 Score=114.60 Aligned_cols=157 Identities=16% Similarity=0.093 Sum_probs=110.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCc-----ccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNR-----AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~-----~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 237 (381)
...|+++|.-++|||||+.++-.... ...+. -.+|.....+.+.+.+..+.+||..|+...++
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~k-i~~tvgLnig~i~v~~~~l~fwdlgGQe~lrS----------- 84 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSK-ITPTVGLNIGTIEVCNAPLSFWDLGGQESLRS----------- 84 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHH-eecccceeecceeeccceeEEEEcCChHHHHH-----------
Confidence 34789999999999999988765421 01111 12455556666777888899999999865332
Q ss_pred hhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHH--hCCCCeEEEEEeCcc
Q 016883 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK--NYMDKFIILAVNKCE 314 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~--~~~~~p~ivV~NK~D 314 (381)
....++..||+++||+|+.++...++ ...++.+.. .+.+.|+++.+||.|
T Consensus 85 ---------------------------lw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd 137 (197)
T KOG0076|consen 85 ---------------------------LWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQD 137 (197)
T ss_pred ---------------------------HHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhh
Confidence 44577889999999999998433322 222222222 235999999999999
Q ss_pred CCCcccchhHH-H-------hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 315 SPRKGIMQVSE-F-------WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 315 l~~~~~~~~~~-~-------~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
+.+........ . .....++.+|||.+|+||++-++|+...+++.
T Consensus 138 ~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 138 LQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 87643322221 1 12245889999999999999999999998876
No 283
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.37 E-value=2.7e-13 Score=131.96 Aligned_cols=149 Identities=23% Similarity=0.206 Sum_probs=98.0
Q ss_pred ccccccCCCCchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCC-CCCccchhHhhHHHHHHHHHh
Q 016883 46 LSLHKHYPLPLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDG-QDFGIDVDALEREAKDAVREY 124 (381)
Q Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~-~~~~i~~sa~~~~~~~~l~~~ 124 (381)
=+-+....-.+.+++++.... .++|+||+|+.+.... ..|.+.+... +..++.+++....+...+...
T Consensus 43 Dar~P~~s~~~~l~~~v~~k~----~i~vlNK~DL~~~~~~-------~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~ 111 (322)
T COG1161 43 DARDPLGTRNPELERIVKEKP----KLLVLNKADLAPKEVT-------KKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKA 111 (322)
T ss_pred eccccccccCccHHHHHccCC----cEEEEehhhcCCHHHH-------HHHHHHHHhcCCCccEEEEeecccCccchHHH
Confidence 344566667788888887665 3999999999764321 2232333333 345667776666664445443
Q ss_pred hhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCccccccee
Q 016883 125 SSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG 204 (381)
Q Consensus 125 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~ 204 (381)
...+.. +..+..... .......+++++|.||||||||||+|.+...+.+++.||+|.+.+..
T Consensus 112 ~~~~~~---------~~i~~~~~~---------~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i 173 (322)
T COG1161 112 LEKLSE---------EKIKRLKKK---------GLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWI 173 (322)
T ss_pred HHHHHH---------HHHHHHhhc---------CCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEE
Confidence 333311 111111100 00112458999999999999999999999989999999999999886
Q ss_pred eEEeCCceEEEEEcCCCCCccC
Q 016883 205 RSFWGEHEFMLVDTGGVLNVSK 226 (381)
Q Consensus 205 ~~~~~~~~~~liDTPG~~~~~~ 226 (381)
.+ +..+.++||||+.-...
T Consensus 174 ~~---~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 174 KL---DDGIYLLDTPGIIPPKF 192 (322)
T ss_pred Ec---CCCeEEecCCCcCCCCc
Confidence 65 44589999999976443
No 284
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.37 E-value=2.2e-12 Score=115.55 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=115.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC-Cce--EEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHE--FMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~--~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..+++++|..++|||+|+....... ....+.+|-.+.....+.++ |.. +.+|||.|+++.+..+.
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~--fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRp---------- 71 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNA--FPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRP---------- 71 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCc--CcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccc----------
Confidence 3589999999999999998877663 44555556566666667774 654 56999999998755332
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
..+..+|+++++++..++.+..+ ..|+..++...++.|+|+|++|.|+.+
T Consensus 72 ----------------------------lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 72 ----------------------------LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD 123 (198)
T ss_pred ----------------------------cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh
Confidence 25578999999999988766664 668889999888999999999999985
Q ss_pred cc-cchhHH---------------HhhCC-CceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 318 KG-IMQVSE---------------FWSLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 318 ~~-~~~~~~---------------~~~~~-~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+. ..+... ....+ ..++++||++..|+.++|+........
T Consensus 124 d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 124 DPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred CHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhc
Confidence 32 110000 12234 478999999999999999998776544
No 285
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.36 E-value=6.6e-12 Score=110.18 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=49.1
Q ss_pred eEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH
Q 016883 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (381)
Q Consensus 212 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~ 291 (381)
.+.|+||||+.+...... ..+..++..+|+++||+++.+.+...+.
T Consensus 102 ~~~lvDtPG~~~~~~~~~----------------------------------~~~~~~~~~~d~vi~V~~~~~~~~~~~~ 147 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHT----------------------------------EITEEYLPKADVVIFVVDANQDLTESDM 147 (168)
T ss_dssp SEEEEEEEEBHSSHTTTS----------------------------------HHHHHHHSTTEEEEEEEETTSTGGGHHH
T ss_pred ceEEEeCCccccchhhhH----------------------------------HHHHHhhccCCEEEEEeccCcccchHHH
Confidence 578999999977444332 3566777899999999999988887776
Q ss_pred HHHHHHHHhCCCCeEEEEEeCc
Q 016883 292 EIADWLRKNYMDKFIILAVNKC 313 (381)
Q Consensus 292 ~~~~~l~~~~~~~p~ivV~NK~ 313 (381)
+.+....... ...+++|+||+
T Consensus 148 ~~l~~~~~~~-~~~~i~V~nk~ 168 (168)
T PF00350_consen 148 EFLKQMLDPD-KSRTIFVLNKA 168 (168)
T ss_dssp HHHHHHHTTT-CSSEEEEEE-G
T ss_pred HHHHHHhcCC-CCeEEEEEcCC
Confidence 6555554432 45599999995
No 286
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=8.5e-12 Score=104.29 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=104.9
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcc-cccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt-~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
..++-.++|.-|||||.|+..+...+ ...+.|+|. .......+.+.|. ++++|||.|+++++.
T Consensus 10 yifkyiiigdmgvgkscllhqftekk--fmadcphtigvefgtriievsgqkiklqiwdtagqerfra------------ 75 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRA------------ 75 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHH--HhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHH------------
Confidence 35688999999999999999998776 345556432 2222333455554 578999999976432
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESP 316 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~ 316 (381)
.+..+++.+-..++|+|.....+... ..|+...+.. .++..++++.||.|+.
T Consensus 76 --------------------------vtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 76 --------------------------VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred --------------------------HHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 56678889999999999988666555 2344444442 2466788899999997
Q ss_pred Ccccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHH
Q 016883 317 RKGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLV 351 (381)
Q Consensus 317 ~~~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i 351 (381)
...... ...+ ...+..++++||++|+|+++.|-..
T Consensus 130 ~qrdv~yeeak~faeengl~fle~saktg~nvedafle~ 168 (215)
T KOG0097|consen 130 SQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLET 168 (215)
T ss_pred hcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHH
Confidence 654332 2222 2356788999999999999865443
No 287
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.34 E-value=3.2e-11 Score=118.38 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=113.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCC----Ccc-----------cccCCCC---cccccce---eeEEe--C---CceEEE
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGG----NRA-----------IVVDEPG---VTRDRMY---GRSFW--G---EHEFML 215 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~----~~~-----------~~~~~~~---tt~~~~~---~~~~~--~---~~~~~l 215 (381)
+..-++++|+.++|||||||++.+. ... .+++.+| +|+++.+ ..+.+ . ..++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4568999999999999999999987 444 4566677 6666655 22222 1 257899
Q ss_pred EEcCCCCCccCCCchhhhhh-hhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhc-cccEEEEEE-eCC------CCC
Q 016883 216 VDTGGVLNVSKSQPNIMEDL-AITTTIGMEGIPLATREAAVARMPSMIERQATAAIE-ESCVIIFLV-DGQ------AGL 286 (381)
Q Consensus 216 iDTPG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~d~ii~Vv-D~~------~~~ 286 (381)
+||+|+...........+.- .+++-+==.-+|+..-- +--+.+.+. .+|+.++|. |.+ ..+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AA----------eiGT~kVI~dhstIgivVtTDgsi~dI~Re~y 165 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAA----------EIGTRKVIQEHSTIGVVVTTDGTITDIPREDY 165 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhh----------hhhHHHHHHhcCcEEEEEEcCCCccccccccc
Confidence 99999987544332111100 00000000122331111 112555666 799999998 775 467
Q ss_pred ChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH-H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 287 TAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-E-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~-~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
...+..++..+++. ++|+++|+||+|-..++..+.. . ...++.|++++|+..-. -+++...+.+.|-+.
T Consensus 166 ~~aEe~~i~eLk~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~-~~DI~~il~~vL~EF 236 (492)
T TIGR02836 166 VEAEERVIEELKEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMR-ESDILSVLEEVLYEF 236 (492)
T ss_pred hHHHHHHHHHHHhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcC-HHHHHHHHHHHHhcC
Confidence 77788899999998 9999999999994433322111 2 23457898999986532 344444444444433
No 288
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.34 E-value=6.1e-12 Score=114.94 Aligned_cols=165 Identities=20% Similarity=0.224 Sum_probs=118.1
Q ss_pred CCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhh
Q 016883 157 NVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (381)
Q Consensus 157 ~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 236 (381)
.+...+..+|+++|.|.||||||+..++... .....+.+||.....+.+.++|..++++|.||+.++.....+
T Consensus 56 eV~KsGdaRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkG------ 128 (364)
T KOG1486|consen 56 EVLKSGDARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKG------ 128 (364)
T ss_pred eeeccCCeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCC------
Confidence 3455677899999999999999999999876 567788899999999999999999999999999987665542
Q ss_pred hhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCC-----------------------------
Q 016883 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT----------------------------- 287 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~----------------------------- 287 (381)
+| ++.....+.+|+|++|+|++.+..
T Consensus 129 -------RG------------------RQviavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk 183 (364)
T KOG1486|consen 129 -------RG------------------RQVIAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKK 183 (364)
T ss_pred -------CC------------------ceEEEEeecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeec
Confidence 11 234445577999999999875321
Q ss_pred -------------hhHHHHHHH-HHHh-------------------------CCCCeEEEEEeCccCCCcccchhHHHhh
Q 016883 288 -------------AADEEIADW-LRKN-------------------------YMDKFIILAVNKCESPRKGIMQVSEFWS 328 (381)
Q Consensus 288 -------------~~~~~~~~~-l~~~-------------------------~~~~p~ivV~NK~Dl~~~~~~~~~~~~~ 328 (381)
..+..+... ++++ ...++++.|-||+|..+-+..+.. .
T Consensus 184 ~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrl---A 260 (364)
T KOG1486|consen 184 TGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRL---A 260 (364)
T ss_pred cCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHH---h
Confidence 111111111 1110 123447888888887654333222 2
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 329 LGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 329 ~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.....+-+|+...-|++.|++.|++.+.
T Consensus 261 r~PnsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 261 RQPNSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred cCCCcEEEEeccccCHHHHHHHHHHHhc
Confidence 2335688999999999999999999876
No 289
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.33 E-value=3e-11 Score=117.54 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=59.1
Q ss_pred hccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch----hHH-Hhh--------CCCceEEE
Q 016883 270 IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ----VSE-FWS--------LGFSPLPI 336 (381)
Q Consensus 270 l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~----~~~-~~~--------~~~~~~~v 336 (381)
...+|++++|++...+ .+.+... ........++|+||+|+.+..... ... ... ...|++.+
T Consensus 167 ~~~aD~vlvv~~p~~g---d~iq~~k---~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~v 240 (332)
T PRK09435 167 AGMVDFFLLLQLPGAG---DELQGIK---KGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTC 240 (332)
T ss_pred HHhCCEEEEEecCCch---HHHHHHH---hhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEE
Confidence 4579999999774332 2222211 111144458999999987643211 111 111 12478999
Q ss_pred ecCCCCCHHHHHHHHHHHhhhcccccchhh
Q 016883 337 SAISGTGTGELLDLVCSELKKVEVCIGFLL 366 (381)
Q Consensus 337 SA~~g~gi~~l~~~i~~~l~~~~~~~~~~~ 366 (381)
||++|.|+++|++.|.++++....++.+..
T Consensus 241 SA~~g~GIdeL~~~I~~~~~~l~~sg~l~~ 270 (332)
T PRK09435 241 SALEGEGIDEIWQAIEDHRAALTASGEFAA 270 (332)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhccCChHHH
Confidence 999999999999999999987776666644
No 290
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=5.8e-12 Score=105.71 Aligned_cols=153 Identities=18% Similarity=0.227 Sum_probs=109.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+++++|--|+||+|++-++--.+...+-+.++ .....+.+++-++.+||..|....+.
T Consensus 18 e~rililgldGaGkttIlyrlqvgevvttkPtig----fnve~v~yKNLk~~vwdLggqtSirP---------------- 77 (182)
T KOG0072|consen 18 EMRILILGLDGAGKTTILYRLQVGEVVTTKPTIG----FNVETVPYKNLKFQVWDLGGQTSIRP---------------- 77 (182)
T ss_pred ceEEEEeeccCCCeeEEEEEcccCcccccCCCCC----cCccccccccccceeeEccCcccccH----------------
Confidence 3488999999999999998876555322222222 22233455777899999999875443
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC--CCChhHHHHHHHHHH-hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA--GLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~--~~~~~~~~~~~~l~~-~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.++.++.+.|.+|||+|.++ .+.....+++..+.+ .+....++++.||.|....-
T Consensus 78 ----------------------yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~ 135 (182)
T KOG0072|consen 78 ----------------------YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL 135 (182)
T ss_pred ----------------------HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh
Confidence 45578899999999999887 455555667776666 34467788899999986532
Q ss_pred cchh-------HHHhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 320 IMQV-------SEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 320 ~~~~-------~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
...+ .+....-+.+|..||.+|+|++..++|+.+.++.
T Consensus 136 t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 136 TRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred hHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHhc
Confidence 2221 1222334689999999999999999999988764
No 291
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=7.1e-12 Score=104.75 Aligned_cols=152 Identities=22% Similarity=0.255 Sum_probs=110.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+++.+|-.++||||++..|.-.... ... .|.......+++.+..+.+||..|..+.+.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~--~~i--pTvGFnvetVtykN~kfNvwdvGGqd~iRp---------------- 76 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSV--TTI--PTVGFNVETVTYKNVKFNVWDVGGQDKIRP---------------- 76 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCc--ccc--cccceeEEEEEeeeeEEeeeeccCchhhhH----------------
Confidence 348899999999999999999876522 222 233344445677888999999999976443
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC--CChhHHHHHHHHHH-hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG--LTAADEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~--~~~~~~~~~~~l~~-~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.+..|+....++|||+|+.+. +.+...++...+.. .....++++..||.|+....
T Consensus 77 ----------------------lWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 77 ----------------------LWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM 134 (180)
T ss_pred ----------------------HHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc
Confidence 455788899999999998764 33333455555544 34688999999999998743
Q ss_pred cchhH----H---HhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 320 IMQVS----E---FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 320 ~~~~~----~---~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
..++. + .....+-+.++||.+|.|+.+-+.|+...++
T Consensus 135 ~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 135 KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred CHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence 22221 1 2334567889999999999999999987664
No 292
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.31 E-value=8.8e-12 Score=133.92 Aligned_cols=115 Identities=22% Similarity=0.274 Sum_probs=82.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccc---------cC------CCCcccccceeeEEe----CCceEEEEEcCCCCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIV---------VD------EPGVTRDRMYGRSFW----GEHEFMLVDTGGVLN 223 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~---------~~------~~~tt~~~~~~~~~~----~~~~~~liDTPG~~~ 223 (381)
..+|+++|+.++|||||+++|+...-... .+ ..+.|.......+.+ .+..+.|+||||+.+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 45899999999999999999975421100 00 113333333333333 355688999999976
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+. ..+...+..+|++++|+|+..+...++..++..+.+. +
T Consensus 100 f~--------------------------------------~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~--~ 139 (731)
T PRK07560 100 FG--------------------------------------GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE--R 139 (731)
T ss_pred hH--------------------------------------HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc--C
Confidence 42 2455667889999999999999888888888876665 7
Q ss_pred CeEEEEEeCccCCC
Q 016883 304 KFIILAVNKCESPR 317 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~ 317 (381)
.|.|+++||+|+..
T Consensus 140 ~~~iv~iNK~D~~~ 153 (731)
T PRK07560 140 VKPVLFINKVDRLI 153 (731)
T ss_pred CCeEEEEECchhhc
Confidence 78899999999763
No 293
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.4e-11 Score=121.04 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=119.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCc--ccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~--~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.|+..|+-..|||||+.++.+... ..-....|+|.+..+.....++..+.|+|.||+.++-
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i----------------- 64 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFI----------------- 64 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHH-----------------
Confidence 478899999999999999998742 2333456899999888888888889999999997521
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeE-EEEEeCccCCCcccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI-ILAVNKCESPRKGIM 321 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~-ivV~NK~Dl~~~~~~ 321 (381)
......+...|.+++||++++++..++.+.+..+.-. +++- ++|+||+|..+....
T Consensus 65 ---------------------~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdll--gi~~giivltk~D~~d~~r~ 121 (447)
T COG3276 65 ---------------------SNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLL--GIKNGIIVLTKADRVDEARI 121 (447)
T ss_pred ---------------------HHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhc--CCCceEEEEeccccccHHHH
Confidence 2344556789999999999999999999988888765 5554 999999999875422
Q ss_pred hhH-----HHh-hCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 322 QVS-----EFW-SLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 322 ~~~-----~~~-~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
+.. ... -.+.++|.+|+++|+||++|.+.|.+...
T Consensus 122 e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 122 EQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 221 111 23457899999999999999999999884
No 294
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=1.1e-12 Score=113.73 Aligned_cols=154 Identities=17% Similarity=0.121 Sum_probs=111.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCC-Ccccccceee--EEeCCceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGR--SFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~-~tt~~~~~~~--~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
.++++++|..+|||||+|.+.+.+-+ +..+. ....+..... +...+....+|||.|..+++
T Consensus 20 aiK~vivGng~VGKssmiqryCkgif--TkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfD-------------- 83 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGIF--TKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFD-------------- 83 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhcccc--ccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHH--------------
Confidence 56899999999999999999997642 22221 1111111111 22234456799999997643
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
..+..+++.|...++|+...+..+..- .+|.+.+.+....+|.++|-||+|+.++
T Consensus 84 ------------------------aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 84 ------------------------AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVED 139 (246)
T ss_pred ------------------------HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHh
Confidence 255678899999999999887655443 6788888887779999999999999876
Q ss_pred ccchhHH----HhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 319 GIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~~~~~~~----~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
....... ...++...+.+|++...|+..+|.+|.+.+-
T Consensus 140 s~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 140 SQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred hhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 4433221 2345667899999999999999999987654
No 295
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.30 E-value=6.1e-11 Score=109.92 Aligned_cols=160 Identities=13% Similarity=0.066 Sum_probs=98.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEE-eCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSF-WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
||+++|+.|+||||+.+.+.....+......+.|.+.....+. .+...+.+||+||+.+....-
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~--------------- 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY--------------- 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT---------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc---------------
Confidence 6899999999999999999987544444445566666655554 345589999999997653321
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHH----HHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE----IADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~----~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
+..+....+++++++|||+|+.......+.. ++..+.+.-++..+.++++|+|+..++
T Consensus 66 ------------------~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 66 ------------------FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSED 127 (232)
T ss_dssp ------------------HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH
T ss_pred ------------------ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHH
Confidence 0012234578999999999998443344432 344455555789999999999998754
Q ss_pred cchhHH----------HhhCC---CceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 320 IMQVSE----------FWSLG---FSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 320 ~~~~~~----------~~~~~---~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
...... ....+ +.++.+|..+ +.+-+.+..+.+.+-+.
T Consensus 128 ~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 128 EREEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHccc
Confidence 332211 12223 5677788777 57888888887766543
No 296
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.30 E-value=9.9e-13 Score=130.04 Aligned_cols=180 Identities=18% Similarity=0.145 Sum_probs=103.8
Q ss_pred CCCceeEcccCCCCCCCCCCCcccccccccc-ccccCCCC---CccchhHhhHHHHHHHHHhhhhhhhhhhhhhchhhhh
Q 016883 67 PSNDAVSSSNDDAFEDSPFEDEDDDAEYEDV-DDESDGQD---FGIDVDALEREAKDAVREYSSLLSRQLIIQDETDDRK 142 (381)
Q Consensus 67 ~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~-~~~~~~~~---~~i~~sa~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~ 142 (381)
..+|+++|+||+|+.+.+.. .....++. +.....+. ..+.+|+.++.+ +.+.+..+...
T Consensus 89 ~~~piilV~NK~DLl~k~~~---~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~g---v~eL~~~l~~~----------- 151 (360)
T TIGR03597 89 GGNPVLLVGNKIDLLPKSVN---LSKIKEWMKKRAKELGLKPVDIILVSAKKGNG---IDELLDKIKKA----------- 151 (360)
T ss_pred CCCCEEEEEEchhhCCCCCC---HHHHHHHHHHHHHHcCCCcCcEEEecCCCCCC---HHHHHHHHHHH-----------
Confidence 46899999999999753221 00111111 11222222 356678888777 33332222110
Q ss_pred hhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCC-----cccccCCCCcccccceeeEEeCCceEEEEE
Q 016883 143 DSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-----RAIVVDEPGVTRDRMYGRSFWGEHEFMLVD 217 (381)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~-----~~~~~~~~~tt~~~~~~~~~~~~~~~~liD 217 (381)
.. ..+++++|.+|||||||+|+|++.. ...++..|+||.......+ +..+.++|
T Consensus 152 ---~~---------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~D 210 (360)
T TIGR03597 152 ---RN---------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYD 210 (360)
T ss_pred ---hC---------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEE
Confidence 00 1288999999999999999999853 3568889999988765443 33468999
Q ss_pred cCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHH---hccccEEEEEEeCCCCCChhHHHHH
Q 016883 218 TGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAA---IEESCVIIFLVDGQAGLTAADEEIA 294 (381)
Q Consensus 218 TPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~d~ii~VvD~~~~~~~~~~~~~ 294 (381)
|||+....... .++....+.. -+....+.+.++..+.+.......+
T Consensus 211 tPG~~~~~~~~-------------------------------~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~ 259 (360)
T TIGR03597 211 TPGIINSHQMA-------------------------------HYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARF 259 (360)
T ss_pred CCCCCChhHhh-------------------------------hhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEE
Confidence 99997532111 1111111111 1346678888887764444333333
Q ss_pred HHHHHhCCCCeEEEEEeCccCCC
Q 016883 295 DWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 295 ~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
+.+... ...+.+.++|.+...
T Consensus 260 d~~~~~--~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 260 DYLKGE--KTSFTFYVSNELNIH 280 (360)
T ss_pred EEecCC--ceEEEEEccCCceeE
Confidence 333322 455666677766543
No 297
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.29 E-value=1.1e-10 Score=99.03 Aligned_cols=170 Identities=15% Similarity=0.158 Sum_probs=117.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC---ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~---~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..+|+++|.-+||||+++..|+..+...-.+.-.|..+.....+..+. ..+.+.||.|+.+...
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~------------- 75 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ------------- 75 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh-------------
Confidence 348999999999999999998866532222222333444444443322 3578999999976522
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHh---CCCCeEEEEEeCccCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN---YMDKFIILAVNKCESP 316 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~---~~~~p~ivV~NK~Dl~ 316 (381)
+.-..+++.+|..++|++..++.+.+..++++.-... .+.+|++++.||+|+.
T Consensus 76 ------------------------eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 76 ------------------------ELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred ------------------------hhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 1233677889999999999876665555544332221 2579999999999997
Q ss_pred Ccccch--hHHHh--hCCCceEEEecCCCCCHHHHHHHHHHHhhhcccccchhhhHH
Q 016883 317 RKGIMQ--VSEFW--SLGFSPLPISAISGTGTGELLDLVCSELKKVEVCIGFLLICN 369 (381)
Q Consensus 317 ~~~~~~--~~~~~--~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~~~~~~~~~~ 369 (381)
.+.... ....| ...+..++++|.....+-+.|..+...+-..+..+.|++..+
T Consensus 132 ~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~pqskS~Fpl~~r 188 (198)
T KOG3883|consen 132 EPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQPQSKSTFPLSRR 188 (198)
T ss_pred cchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccCCcccccCcchhh
Confidence 543322 22233 345678999999999999999999998887777777766643
No 298
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.29 E-value=1.2e-11 Score=132.50 Aligned_cols=115 Identities=22% Similarity=0.217 Sum_probs=83.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCc---------------ccccCCCCcccccceee----EEeCCceEEEEEcCCCCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNR---------------AIVVDEPGVTRDRMYGR----SFWGEHEFMLVDTGGVLN 223 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~---------------~~~~~~~~tt~~~~~~~----~~~~~~~~~liDTPG~~~ 223 (381)
..+|+++|+.|+|||||+++|+...- .......+.|....... +.+.+..+.+|||||+.+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 45999999999999999999974210 00000123344332222 344567789999999976
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+.. .+..++..+|++++|+|+..+...++..+++.+.+. +
T Consensus 99 f~~--------------------------------------~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~--~ 138 (720)
T TIGR00490 99 FGG--------------------------------------DVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE--N 138 (720)
T ss_pred cHH--------------------------------------HHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc--C
Confidence 431 445677899999999999988888887777776665 7
Q ss_pred CeEEEEEeCccCCC
Q 016883 304 KFIILAVNKCESPR 317 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~ 317 (381)
.|.++|+||+|...
T Consensus 139 ~p~ivviNKiD~~~ 152 (720)
T TIGR00490 139 VKPVLFINKVDRLI 152 (720)
T ss_pred CCEEEEEEChhccc
Confidence 88899999999864
No 299
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.29 E-value=8.5e-12 Score=102.46 Aligned_cols=139 Identities=21% Similarity=0.235 Sum_probs=92.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+++++|..|+|||||.+.|.|.... ...|.. +++++. ..+||||-.-....
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-----ykKTQA-----ve~~d~--~~IDTPGEy~~~~~----------------- 53 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-----YKKTQA-----VEFNDK--GDIDTPGEYFEHPR----------------- 53 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-----hcccce-----eeccCc--cccCCchhhhhhhH-----------------
Confidence 7899999999999999999987521 111221 222221 36999997521111
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~ 324 (381)
+-.........+|++++|..++++.+.....+.... .+|+|-|++|+|+..+......
T Consensus 54 -----------------~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-----~k~vIgvVTK~DLaed~dI~~~ 111 (148)
T COG4917 54 -----------------WYHALITTLQDADVIIYVHAANDPESRFPPGFLDIG-----VKKVIGVVTKADLAEDADISLV 111 (148)
T ss_pred -----------------HHHHHHHHhhccceeeeeecccCccccCCccccccc-----ccceEEEEecccccchHhHHHH
Confidence 011233445789999999999887555443333322 5679999999999964433332
Q ss_pred -HHh-h-CCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 325 -EFW-S-LGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 325 -~~~-~-~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
++. . ...++|.+|+.+..|+++|++.|...
T Consensus 112 ~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 112 KRWLREAGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred HHHHHHcCCcceEEEeccCcccHHHHHHHHHhh
Confidence 221 2 24489999999999999999988653
No 300
>PTZ00416 elongation factor 2; Provisional
Probab=99.29 E-value=1.1e-11 Score=134.82 Aligned_cols=114 Identities=20% Similarity=0.262 Sum_probs=84.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCC---------------CCcccccceeeEEeC----------CceEEEEE
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE---------------PGVTRDRMYGRSFWG----------EHEFMLVD 217 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~---------------~~tt~~~~~~~~~~~----------~~~~~liD 217 (381)
..+|+++|+.++|||||+++|+.......... .+.|.......+.+. +..+.++|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 45999999999999999999986431111111 123333322233333 45689999
Q ss_pred cCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHH
Q 016883 218 TGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWL 297 (381)
Q Consensus 218 TPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l 297 (381)
|||+.++. ..+...+..+|++++|+|+..+...++..+++.+
T Consensus 99 tPG~~~f~--------------------------------------~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~ 140 (836)
T PTZ00416 99 SPGHVDFS--------------------------------------SEVTAALRVTDGALVVVDCVEGVCVQTETVLRQA 140 (836)
T ss_pred CCCHHhHH--------------------------------------HHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHH
Confidence 99997532 2455677899999999999999999998888888
Q ss_pred HHhCCCCeEEEEEeCccCC
Q 016883 298 RKNYMDKFIILAVNKCESP 316 (381)
Q Consensus 298 ~~~~~~~p~ivV~NK~Dl~ 316 (381)
.+. ++|+++++||+|+.
T Consensus 141 ~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 141 LQE--RIRPVLFINKVDRA 157 (836)
T ss_pred HHc--CCCEEEEEEChhhh
Confidence 876 89999999999997
No 301
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.28 E-value=1.3e-10 Score=119.96 Aligned_cols=127 Identities=16% Similarity=0.146 Sum_probs=86.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCC-CCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE-PGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
...+|+++|.+|+||||++|+|++.....++.. ++||. ........++..+.++||||+.+...... ..+
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~-~ne------- 187 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQS-KNE------- 187 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccchH-HHH-------
Confidence 356899999999999999999999876555554 44444 43333455788899999999987532111 000
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhc--cccEEEEEEeCCC-CCChhHHHHHHHHHHhC---CCCeEEEEEeCcc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIE--ESCVIIFLVDGQA-GLTAADEEIADWLRKNY---MDKFIILAVNKCE 314 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~d~ii~VvD~~~-~~~~~~~~~~~~l~~~~---~~~p~ivV~NK~D 314 (381)
.+.+....++. .+|+++||...+. .....+..+++.+.+.+ .-..+|||+|..|
T Consensus 188 --------------------eILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD 247 (763)
T TIGR00993 188 --------------------KILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAA 247 (763)
T ss_pred --------------------HHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCc
Confidence 11122223333 4899999987653 23335667888887755 2477899999999
Q ss_pred CCC
Q 016883 315 SPR 317 (381)
Q Consensus 315 l~~ 317 (381)
..+
T Consensus 248 ~lp 250 (763)
T TIGR00993 248 SAP 250 (763)
T ss_pred cCC
Confidence 886
No 302
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.28 E-value=1.8e-11 Score=133.19 Aligned_cols=115 Identities=22% Similarity=0.255 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCC---------------CCcccccceeeEEeC----------------C
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE---------------PGVTRDRMYGRSFWG----------------E 210 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~---------------~~tt~~~~~~~~~~~----------------~ 210 (381)
...+|+++|+.++|||||+++|+.......... .+.|.......+.+. +
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 356999999999999999999986532111111 122333222223332 4
Q ss_pred ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH
Q 016883 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (381)
Q Consensus 211 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~ 290 (381)
..+.++||||+.++. ..+...+..+|++++|+|+..+...++
T Consensus 98 ~~inliDtPGh~dF~--------------------------------------~e~~~al~~~D~ailVvda~~Gv~~~t 139 (843)
T PLN00116 98 YLINLIDSPGHVDFS--------------------------------------SEVTAALRITDGALVVVDCIEGVCVQT 139 (843)
T ss_pred eEEEEECCCCHHHHH--------------------------------------HHHHHHHhhcCEEEEEEECCCCCcccH
Confidence 567899999997643 245566789999999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCccCC
Q 016883 291 EEIADWLRKNYMDKFIILAVNKCESP 316 (381)
Q Consensus 291 ~~~~~~l~~~~~~~p~ivV~NK~Dl~ 316 (381)
..+++.+.+. ++|+++++||+|+.
T Consensus 140 ~~~~~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 140 ETVLRQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred HHHHHHHHHC--CCCEEEEEECCccc
Confidence 8888888877 89999999999987
No 303
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.28 E-value=2.2e-11 Score=113.03 Aligned_cols=170 Identities=22% Similarity=0.292 Sum_probs=114.5
Q ss_pred cCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCc-ccccC-CCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhh
Q 016883 155 IGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNR-AIVVD-EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIM 232 (381)
Q Consensus 155 ~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~-~~~~~-~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~ 232 (381)
..+.|..+.+.+++.|.+|||||||||.++..+. ...+. .++.|+..++..+ +..++++|.||..
T Consensus 128 ~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~---------- 194 (320)
T KOG2486|consen 128 AEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYG---------- 194 (320)
T ss_pred eccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcc----------
Confidence 3455667789999999999999999999988753 22333 5566666655443 7789999999953
Q ss_pred hhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeC
Q 016883 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNK 312 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK 312 (381)
+.|+++..-+++..--.+++.++ ++--.+++++|++-++...|.....++.+. ++|+.+|+||
T Consensus 195 ----------~a~y~~~~~~d~~~~t~~Y~leR-----~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~--~VP~t~vfTK 257 (320)
T KOG2486|consen 195 ----------RAGYGFELPADWDKFTKSYLLER-----ENLVRVFLLVDASVPIQPTDNPEIAWLGEN--NVPMTSVFTK 257 (320)
T ss_pred ----------cccCCccCcchHhHhHHHHHHhh-----hhhheeeeeeeccCCCCCCChHHHHHHhhc--CCCeEEeeeh
Confidence 23333333333322222222111 123356777899999999999999999988 9999999999
Q ss_pred ccCCCccc-------chhHH-H-------hhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 313 CESPRKGI-------MQVSE-F-------WSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 313 ~Dl~~~~~-------~~~~~-~-------~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
||...+.. .+... + .....|++.+|+.++.|++.|+-.|.+.
T Consensus 258 ~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 258 CDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred hhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhhh
Confidence 99754321 11111 1 1123477889999999999987766553
No 304
>PRK13796 GTPase YqeH; Provisional
Probab=99.26 E-value=4.4e-12 Score=125.66 Aligned_cols=128 Identities=19% Similarity=0.188 Sum_probs=78.4
Q ss_pred HHHHhhhcCCCCceeEcccCCCCCCCCCCCcccccccccc-ccccCCCC---CccchhHhhHHHHHHHHHhhhhhhhhhh
Q 016883 58 LTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDV-DDESDGQD---FGIDVDALEREAKDAVREYSSLLSRQLI 133 (381)
Q Consensus 58 l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~-~~~~~~~~---~~i~~sa~~~~~~~~l~~~~~~l~~~l~ 133 (381)
....+.+..+.+|+++|+||+|+.+.... .....++. ..+...+. +.+.+|+.++.+...+. +.+..
T Consensus 86 ~~~~L~~~~~~kpviLViNK~DLl~~~~~---~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~---~~I~~--- 156 (365)
T PRK13796 86 WIPGLHRFVGNNPVLLVGNKADLLPKSVK---KNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELL---EAIEK--- 156 (365)
T ss_pred hhHHHHHHhCCCCEEEEEEchhhCCCccC---HHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHH---HHHHH---
Confidence 34445544457899999999999643211 01111121 11222222 45667877766632222 22211
Q ss_pred hhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCC-----cccccCCCCcccccceeeEEe
Q 016883 134 IQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-----RAIVVDEPGVTRDRMYGRSFW 208 (381)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~-----~~~~~~~~~tt~~~~~~~~~~ 208 (381)
... ..++.++|.+|||||||||+|.+.. ...++..||||++.....+
T Consensus 157 -----------~~~---------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l-- 208 (365)
T PRK13796 157 -----------YRE---------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL-- 208 (365)
T ss_pred -----------hcC---------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--
Confidence 001 1278999999999999999998542 3457889999998776443
Q ss_pred CCceEEEEEcCCCCC
Q 016883 209 GEHEFMLVDTGGVLN 223 (381)
Q Consensus 209 ~~~~~~liDTPG~~~ 223 (381)
+ ....++||||+..
T Consensus 209 ~-~~~~l~DTPGi~~ 222 (365)
T PRK13796 209 D-DGSFLYDTPGIIH 222 (365)
T ss_pred C-CCcEEEECCCccc
Confidence 2 2358999999964
No 305
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.25 E-value=1.3e-11 Score=117.84 Aligned_cols=145 Identities=25% Similarity=0.296 Sum_probs=99.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcc----------ccc----------------------CCCCcccccceeeEEeCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRA----------IVV----------------------DEPGVTRDRMYGRSFWGE 210 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~----------~~~----------------------~~~~tt~~~~~~~~~~~~ 210 (381)
..+++.+|...-||||||-+|+.+..+ ..+ ...|.|.+..+..+....
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence 568899999999999999999876311 011 113567777766666778
Q ss_pred ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH
Q 016883 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (381)
Q Consensus 211 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~ 290 (381)
.+|.+.||||++.+.. ....-...||+.|+++|+..++..+.
T Consensus 86 RkFIiADTPGHeQYTR--------------------------------------NMaTGASTadlAIlLVDAR~Gvl~QT 127 (431)
T COG2895 86 RKFIIADTPGHEQYTR--------------------------------------NMATGASTADLAILLVDARKGVLEQT 127 (431)
T ss_pred ceEEEecCCcHHHHhh--------------------------------------hhhcccccccEEEEEEecchhhHHHh
Confidence 8999999999975322 12223467999999999999988888
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCccCCCccc--chhH----H-H-hhCC---CceEEEecCCCCCHHH
Q 016883 291 EEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVS----E-F-WSLG---FSPLPISAISGTGTGE 346 (381)
Q Consensus 291 ~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~--~~~~----~-~-~~~~---~~~~~vSA~~g~gi~~ 346 (381)
+..--...- +.-+.+++.+||+|+.+-.. .+.+ . + ..++ ..++|+||..|+|+-.
T Consensus 128 rRHs~I~sL-LGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 128 RRHSFIASL-LGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHH-hCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 664333322 22466778899999987322 2211 1 1 1233 3689999999999863
No 306
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.25 E-value=1.1e-10 Score=108.10 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=61.0
Q ss_pred cccEEEEEEeCCCCCC---hhHHHHH--HHHHHhCCCCeEEEEEeCccCCCcccchh-----------HH----------
Q 016883 272 ESCVIIFLVDGQAGLT---AADEEIA--DWLRKNYMDKFIILAVNKCESPRKGIMQV-----------SE---------- 325 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~---~~~~~~~--~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~-----------~~---------- 325 (381)
..-+++||+|....-. ...-.++ ..+-+. +.|+|+|+||+|+.+.+.... ..
T Consensus 147 ~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilykt--klp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l 224 (366)
T KOG1532|consen 147 FPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKT--KLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNL 224 (366)
T ss_pred CCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhc--cCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHh
Confidence 4678999999765332 2222222 233333 899999999999987532111 00
Q ss_pred ---------HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcccccc
Q 016883 326 ---------FWSLGFSPLPISAISGTGTGELLDLVCSELKKVEVCIG 363 (381)
Q Consensus 326 ---------~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~~~~ 363 (381)
-+..++..+.|||.+|.|.++++..+.+.+.+|.....
T Consensus 225 ~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~yk 271 (366)
T KOG1532|consen 225 TRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYK 271 (366)
T ss_pred hhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhh
Confidence 01235678999999999999999999998887775433
No 307
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.24 E-value=2e-10 Score=107.13 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=45.6
Q ss_pred HHHHHHHHhcc-ccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 262 IERQATAAIEE-SCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 262 ~~~~~~~~l~~-~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
+.+.+..++++ .+++++|+|+..++..++ .++.+.+... +.++++|+||+|..++.
T Consensus 151 i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~--~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 151 IKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ--GERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc--CCcEEEEEECCCCCCcc
Confidence 45567778884 569999999988888777 5778888776 89999999999998754
No 308
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.23 E-value=5e-12 Score=121.86 Aligned_cols=147 Identities=19% Similarity=0.153 Sum_probs=98.0
Q ss_pred ccccccccccC---CCCchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhH--hhHH
Q 016883 42 QLLSLSLHKHY---PLPLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDA--LERE 116 (381)
Q Consensus 42 ~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa--~~~~ 116 (381)
+++++-|+--- +--..+++||++..|.|..+.|+||+||++.--- ..| -.-....|+.+..-| ...-
T Consensus 215 DVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt-------~~W-v~~lSkeyPTiAfHAsi~nsf 286 (572)
T KOG2423|consen 215 DVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVT-------AKW-VRHLSKEYPTIAFHASINNSF 286 (572)
T ss_pred ceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHH-------HHH-HHHHhhhCcceeeehhhcCcc
Confidence 34555555433 3447899999999999999999999999864211 122 112222345444322 2222
Q ss_pred HHHHHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCC
Q 016883 117 AKDAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPG 196 (381)
Q Consensus 117 ~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~ 196 (381)
|.+.+-+.+..+.+. ..+...+.|+|+|.||+||||+||+|...+++.+.+.+|
T Consensus 287 GKgalI~llRQf~kL--------------------------h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpG 340 (572)
T KOG2423|consen 287 GKGALIQLLRQFAKL--------------------------HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPG 340 (572)
T ss_pred chhHHHHHHHHHHhh--------------------------ccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCC
Confidence 333333332222110 012235689999999999999999999999999999999
Q ss_pred cccccceeeEEeCCceEEEEEcCCCCCcc
Q 016883 197 VTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (381)
Q Consensus 197 tt~~~~~~~~~~~~~~~~liDTPG~~~~~ 225 (381)
.|.-.++..+ -.++++||+||+.-..
T Consensus 341 ETKVWQYItL---mkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 341 ETKVWQYITL---MKRIFLIDCPGVVYPS 366 (572)
T ss_pred cchHHHHHHH---HhceeEecCCCccCCC
Confidence 9998888665 4678999999987543
No 309
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.23 E-value=3.6e-10 Score=109.19 Aligned_cols=87 Identities=17% Similarity=0.120 Sum_probs=55.4
Q ss_pred HhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh--------HHH-hh----CCCceEE
Q 016883 269 AIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV--------SEF-WS----LGFSPLP 335 (381)
Q Consensus 269 ~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~--------~~~-~~----~~~~~~~ 335 (381)
.+..+|.++++.+... ..+.+.+. ..+.++|.++|+||+|+........ ... .. ...++++
T Consensus 144 i~~~aD~i~vv~~~~~---~~el~~~~---~~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~ 217 (300)
T TIGR00750 144 IANMADTFVVVTIPGT---GDDLQGIK---AGLMEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLT 217 (300)
T ss_pred HHHhhceEEEEecCCc---cHHHHHHH---HHHhhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEE
Confidence 3456888888855432 22222221 2223788999999999986532110 011 11 1236899
Q ss_pred EecCCCCCHHHHHHHHHHHhhhcccc
Q 016883 336 ISAISGTGTGELLDLVCSELKKVEVC 361 (381)
Q Consensus 336 vSA~~g~gi~~l~~~i~~~l~~~~~~ 361 (381)
+||++|+|+++++++|.+.+....++
T Consensus 218 iSA~~g~Gi~~L~~~i~~~~~~~~~~ 243 (300)
T TIGR00750 218 TSAVEGRGIDELWDAIEEHKTFLTAS 243 (300)
T ss_pred EEccCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999986655433
No 310
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.23 E-value=3.2e-11 Score=100.98 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=107.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC-ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
+..+++++|--++|||||+..|.+.......++ .......+.+.+ ..+.+||..|....+.
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~~hltpT----~GFn~k~v~~~g~f~LnvwDiGGqr~IRp-------------- 77 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDPRHLTPT----NGFNTKKVEYDGTFHLNVWDIGGQRGIRP-------------- 77 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCChhhcccc----CCcceEEEeecCcEEEEEEecCCccccch--------------
Confidence 456999999999999999999998875433333 223333344444 6789999999976544
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC--ChhHHHHHHHHHH-hCCCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--TAADEEIADWLRK-NYMDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~--~~~~~~~~~~l~~-~~~~~p~ivV~NK~Dl~~ 317 (381)
.+..|+.+.|.+|||+|.++.- .+...++.+.+.. .+...|+.+..||.|++.
T Consensus 78 ------------------------yWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllt 133 (185)
T KOG0074|consen 78 ------------------------YWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLT 133 (185)
T ss_pred ------------------------hhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHh
Confidence 4457889999999999977632 2222344444433 235899999999999876
Q ss_pred cccchhHHH-------hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 318 KGIMQVSEF-------WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 318 ~~~~~~~~~-------~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
....+.... ....+.+-.+||.+++|+.+-.+|+....+
T Consensus 134 aa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 134 AAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred hcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcCCC
Confidence 433332221 223457788999999999999999887654
No 311
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.22 E-value=1.1e-10 Score=111.61 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=78.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccC-CC------Ccccccc--eeeEEeCCc--eEEEEEcCCCCCccCCCchh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVD-EP------GVTRDRM--YGRSFWGEH--EFMLVDTGGVLNVSKSQPNI 231 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~-~~------~tt~~~~--~~~~~~~~~--~~~liDTPG~~~~~~~~~~~ 231 (381)
.++++++|.+|+|||||||.|++........ .+ ..+.... ...+.-++. .+.++||||+++..... ..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~-~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNS-DC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHC-HH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccch-hh
Confidence 3589999999999999999999875432211 11 1111111 222222332 47899999998643321 11
Q ss_pred hhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHh-------------ccccEEEEEEeCC-CCCChhHHHHHHHH
Q 016883 232 MEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAI-------------EESCVIIFLVDGQ-AGLTAADEEIADWL 297 (381)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------------~~~d~ii~VvD~~-~~~~~~~~~~~~~l 297 (381)
...+..+++.+...++ .++|+++|+++++ +++...|.+.++.+
T Consensus 83 -----------------------~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L 139 (281)
T PF00735_consen 83 -----------------------WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL 139 (281)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH
T ss_pred -----------------------hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh
Confidence 1122233333332222 3589999999986 47888998888877
Q ss_pred HHhCCCCeEEEEEeCccCCCcccch
Q 016883 298 RKNYMDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 298 ~~~~~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
.+ .+++|-|+.|+|....+...
T Consensus 140 s~---~vNvIPvIaKaD~lt~~el~ 161 (281)
T PF00735_consen 140 SK---RVNVIPVIAKADTLTPEELQ 161 (281)
T ss_dssp TT---TSEEEEEESTGGGS-HHHHH
T ss_pred cc---cccEEeEEecccccCHHHHH
Confidence 76 68999999999998755443
No 312
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.22 E-value=3e-11 Score=110.88 Aligned_cols=165 Identities=24% Similarity=0.256 Sum_probs=118.8
Q ss_pred CCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhh
Q 016883 157 NVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (381)
Q Consensus 157 ~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 236 (381)
++...+..+|.++|.|.+||||++..|.+.. ..+..+.++|.....+.+.+.+.++++.|.||+.++.+...+
T Consensus 53 DV~ktg~a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkg------ 125 (358)
T KOG1487|consen 53 DVAKTGDARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKG------ 125 (358)
T ss_pred cceeecceeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCC------
Confidence 3444566799999999999999999999875 567778888888888888889999999999999887654331
Q ss_pred hhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCCh----------------------------
Q 016883 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA---------------------------- 288 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~---------------------------- 288 (381)
+| ++.....+.|+++++|+|+..++..
T Consensus 126 -------rg------------------~qviavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKd 180 (358)
T KOG1487|consen 126 -------RG------------------KQVIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKD 180 (358)
T ss_pred -------Cc------------------cEEEEEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccc
Confidence 11 2334455679999999998764321
Q ss_pred ----------hHHHHHHHHHH-h-------------------------CCCCeEEEEEeCccCCCcccchhHHHhhCCCc
Q 016883 289 ----------ADEEIADWLRK-N-------------------------YMDKFIILAVNKCESPRKGIMQVSEFWSLGFS 332 (381)
Q Consensus 289 ----------~~~~~~~~l~~-~-------------------------~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~ 332 (381)
.+.++.+.+.. + ...+|.+.++||+|...-+.++. ......
T Consensus 181 kgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi---i~~iph 257 (358)
T KOG1487|consen 181 KGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI---IYTIPH 257 (358)
T ss_pred cCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhhccCceeeeeeeeecccceeeeeccce---eeeccc
Confidence 22222111111 0 02578899999999765443322 223446
Q ss_pred eEEEecCCCCCHHHHHHHHHHHhh
Q 016883 333 PLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 333 ~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.+++||.++.|++++++.+.+++.
T Consensus 258 avpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 258 AVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred eeecccccccchHHHHHHHhhcch
Confidence 799999999999999999998765
No 313
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.22 E-value=1e-10 Score=114.89 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=88.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC-----cccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN-----RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~-----~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 237 (381)
...|+|+|.+|+|||||||+|.|-. .+.++- ..||.....+.. ..-..+.+||.||++.......
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~-------- 104 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPE-------- 104 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HH--------
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHH--------
Confidence 4489999999999999999998742 122221 124444433221 1223589999999975433222
Q ss_pred hhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCC-
Q 016883 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP- 316 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~- 316 (381)
.|+++ ..+...|++|++.+ ..++..+.++...+++. ++|+.+|-||+|..
T Consensus 105 ----------------------~Yl~~---~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl 155 (376)
T PF05049_consen 105 ----------------------EYLKE---VKFYRYDFFIIISS--ERFTENDVQLAKEIQRM--GKKFYFVRTKVDSDL 155 (376)
T ss_dssp ----------------------HHHHH---TTGGG-SEEEEEES--SS--HHHHHHHHHHHHT--T-EEEEEE--HHHHH
T ss_pred ----------------------HHHHH---ccccccCEEEEEeC--CCCchhhHHHHHHHHHc--CCcEEEEEecccccH
Confidence 11111 12467888776644 46888889999999988 99999999999951
Q ss_pred ------Cc------ccchhHH------HhhCC---CceEEEecCCC--CCHHHHHHHHHHHhhhccc
Q 016883 317 ------RK------GIMQVSE------FWSLG---FSPLPISAISG--TGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 317 ------~~------~~~~~~~------~~~~~---~~~~~vSA~~g--~gi~~l~~~i~~~l~~~~~ 360 (381)
.+ ..++..+ +...+ .++|.||+..- .++..|.+.|.+.++.+.-
T Consensus 156 ~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 156 YNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred hhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 11 1111111 11223 36899999764 4577899999988876653
No 314
>PRK01889 GTPase RsgA; Reviewed
Probab=99.21 E-value=5.9e-12 Score=124.26 Aligned_cols=138 Identities=22% Similarity=0.166 Sum_probs=89.0
Q ss_pred ccccccccccCCCCchHHHHhhhcCC-CCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHH
Q 016883 42 QLLSLSLHKHYPLPLPLTRHLRSLSP-SNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDA 120 (381)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~ 120 (381)
.+++++++ |.+.+..++|||..+.. ..+++||+||+||.+..++ ....+ ..+ ..+++.+.+|+.++.+...
T Consensus 116 vliV~s~~-p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~-----~~~~~-~~~-~~g~~Vi~vSa~~g~gl~~ 187 (356)
T PRK01889 116 VFIVCSLN-HDFNLRRIERYLALAWESGAEPVIVLTKADLCEDAEE-----KIAEV-EAL-APGVPVLAVSALDGEGLDV 187 (356)
T ss_pred EEEEEecC-CCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHH-----HHHHH-HHh-CCCCcEEEEECCCCccHHH
Confidence 35677775 67778899999988655 4788999999999743110 11122 222 4578889999888777333
Q ss_pred HHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCC------
Q 016883 121 VREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE------ 194 (381)
Q Consensus 121 l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~------ 194 (381)
+..... .+ .+++++|.+|+|||||+|.|.+.....++..
T Consensus 188 L~~~L~--------------------~g---------------~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~ 232 (356)
T PRK01889 188 LAAWLS--------------------GG---------------KTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSK 232 (356)
T ss_pred HHHHhh--------------------cC---------------CEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCC
Confidence 333211 01 2789999999999999999998653333222
Q ss_pred -CCcccccceeeEEeCCceEEEEEcCCCCCcc
Q 016883 195 -PGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (381)
Q Consensus 195 -~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~ 225 (381)
.++|.......+. + ...++||||+.+..
T Consensus 233 g~~tt~~~~l~~l~--~-~~~l~DtpG~~~~~ 261 (356)
T PRK01889 233 GRHTTTHRELHPLP--S-GGLLIDTPGMRELQ 261 (356)
T ss_pred CcchhhhccEEEec--C-CCeecCCCchhhhc
Confidence 2344443333332 2 23788999997643
No 315
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.20 E-value=4e-11 Score=106.76 Aligned_cols=113 Identities=25% Similarity=0.317 Sum_probs=64.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe---CCceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~---~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..|+++|++|+|||+|...|..+....+. |...... .... .+..+.++|+||+...+. ..+
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~----tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~---~~~-------- 67 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTV----TSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRS---KLL-------- 67 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B-------SSEEE-ECCGSSTCGTCECEEEETT-HCCCH---HHH--------
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCee----ccccCCc-eEEeecCCCCEEEEEECCCcHHHHH---HHH--------
Confidence 48999999999999999999987421110 1111111 1112 355789999999976432 110
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHH----HHHHHHHh---CCCCeEEEEEeCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE----IADWLRKN---YMDKFIILAVNKC 313 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~----~~~~l~~~---~~~~p~ivV~NK~ 313 (381)
....++..+.+||||+|++. ....-.+ +++.+... ....|++|+.||.
T Consensus 68 ------------------------~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~ 122 (181)
T PF09439_consen 68 ------------------------DELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQ 122 (181)
T ss_dssp ------------------------HHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-T
T ss_pred ------------------------HhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCc
Confidence 11124678999999999874 1111122 22333221 2579999999999
Q ss_pred cCCC
Q 016883 314 ESPR 317 (381)
Q Consensus 314 Dl~~ 317 (381)
|+..
T Consensus 123 Dl~~ 126 (181)
T PF09439_consen 123 DLFT 126 (181)
T ss_dssp TSTT
T ss_pred cccc
Confidence 9865
No 316
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.20 E-value=2.1e-12 Score=112.69 Aligned_cols=92 Identities=20% Similarity=0.147 Sum_probs=57.8
Q ss_pred ccccccCCCCCccchhHhhHHHHHHHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCC
Q 016883 96 DVDDESDGQDFGIDVDALEREAKDAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVG 175 (381)
Q Consensus 96 ~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvG 175 (381)
+.+.|+..+|+.+.+++.++++...+.+. .+++ .++|+|++|||
T Consensus 4 ~~~~y~~~gy~v~~~S~~~~~g~~~l~~~---------------------l~~k---------------~~vl~G~SGvG 47 (161)
T PF03193_consen 4 LLEQYEKLGYPVFFISAKTGEGIEELKEL---------------------LKGK---------------TSVLLGQSGVG 47 (161)
T ss_dssp HHHHHHHTTSEEEE-BTTTTTTHHHHHHH---------------------HTTS---------------EEEEECSTTSS
T ss_pred HHHHHHHcCCcEEEEeCCCCcCHHHHHHH---------------------hcCC---------------EEEEECCCCCC
Confidence 34778899999999998877773333322 2222 88999999999
Q ss_pred hhHHHHHHhCCCccccc-------CCCCcccccceeeEEeCCceEEEEEcCCCCCccC
Q 016883 176 KSALFNRLVGGNRAIVV-------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (381)
Q Consensus 176 KSSLin~L~~~~~~~~~-------~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~ 226 (381)
||||+|+|.+.....++ ...+||++.....+ .....++||||+.++.-
T Consensus 48 KSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 48 KSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSFGL 102 (161)
T ss_dssp HHHHHHHHHTSS----S--------------SEEEEEE---TTSEEEECSHHHHT--G
T ss_pred HHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEec---CCCcEEEECCCCCcccc
Confidence 99999999998533332 22356666655444 23459999999987654
No 317
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.9e-10 Score=109.46 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=103.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCC--cc----cccCCCCcccccceeeEEeC---------CceEEEEEcCCCCCccCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGN--RA----IVVDEPGVTRDRMYGRSFWG---------EHEFMLVDTGGVLNVSKSQ 228 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~--~~----~~~~~~~tt~~~~~~~~~~~---------~~~~~liDTPG~~~~~~~~ 228 (381)
.+++++|+..+|||||..+|..-. .+ ..+...+.|.+..+..+... .-++.++|+||+..
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas----- 82 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS----- 82 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH-----
Confidence 589999999999999999987531 11 12222344544443333221 12468999999953
Q ss_pred chhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEE
Q 016883 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIIL 308 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~iv 308 (381)
+.+..+...+-.|+.++|+|+..+...+..+.+-.-... -...++
T Consensus 83 ---------------------------------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~--c~klvv 127 (522)
T KOG0461|consen 83 ---------------------------------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL--CKKLVV 127 (522)
T ss_pred ---------------------------------HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh--ccceEE
Confidence 123344445668999999999998887776655443333 567789
Q ss_pred EEeCccCCCcccchhH----H------H----hhCCCceEEEecCCC----CCHHHHHHHHHHHhh
Q 016883 309 AVNKCESPRKGIMQVS----E------F----WSLGFSPLPISAISG----TGTGELLDLVCSELK 356 (381)
Q Consensus 309 V~NK~Dl~~~~~~~~~----~------~----~~~~~~~~~vSA~~g----~gi~~l~~~i~~~l~ 356 (381)
|+||+|..+++.+... . + ...+.|++++||+.| ++|.+|++.|.+.+-
T Consensus 128 vinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 128 VINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred EEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 9999999876543221 1 1 123469999999999 899999998877543
No 318
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.1e-10 Score=123.23 Aligned_cols=118 Identities=22% Similarity=0.253 Sum_probs=94.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCC-----ccccc------------CCCCcccccceeeEEeCC-ceEEEEEcCCCCC
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGN-----RAIVV------------DEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLN 223 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~-----~~~~~------------~~~~tt~~~~~~~~~~~~-~~~~liDTPG~~~ 223 (381)
+..+|+++|+.++|||||..+|+-.. ...+. ...|.|.......+.+.+ ..++++||||+.+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 45699999999999999999987431 11111 112556666666778886 8999999999998
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+.. .+...+.-+|++++|+|+..+...+...+.+.+.+. +
T Consensus 89 Ft~--------------------------------------EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~--~ 128 (697)
T COG0480 89 FTI--------------------------------------EVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY--G 128 (697)
T ss_pred cHH--------------------------------------HHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc--C
Confidence 754 455777899999999999999999999999999988 9
Q ss_pred CeEEEEEeCccCCCcc
Q 016883 304 KFIILAVNKCESPRKG 319 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~~~ 319 (381)
+|.++++||+|....+
T Consensus 129 vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 129 VPRILFVNKMDRLGAD 144 (697)
T ss_pred CCeEEEEECccccccC
Confidence 9999999999987654
No 319
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.18 E-value=7.5e-11 Score=111.99 Aligned_cols=86 Identities=27% Similarity=0.316 Sum_probs=69.1
Q ss_pred EEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc-----------------eEEEEEcCCCCCccCCC
Q 016883 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-----------------EFMLVDTGGVLNVSKSQ 228 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~-----------------~~~liDTPG~~~~~~~~ 228 (381)
|+++|.||||||||+|+|++... .++++|++|.+...+.+.+.+. .+.++||||+.......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 47999999999999999999875 8899999999998887777654 48999999998654322
Q ss_pred chhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCC
Q 016883 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~ 283 (381)
.+ +...++..++.+|++++|+|+.
T Consensus 80 ~g-------------------------------lg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EG-------------------------------LGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hH-------------------------------HHHHHHHHHHhCCEEEEEEeCc
Confidence 21 1235667788999999999874
No 320
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=4.6e-10 Score=108.89 Aligned_cols=89 Identities=28% Similarity=0.371 Sum_probs=72.6
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC------------------ceEEEEEcCCCCCcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE------------------HEFMLVDTGGVLNVS 225 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~------------------~~~~liDTPG~~~~~ 225 (381)
.+++++|.||||||||.|+++... +...++|++|.++..+...+.+ ..+.|+|.+|+..+.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 589999999999999999999988 7889999999998877654432 146799999999877
Q ss_pred CCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC
Q 016883 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~ 284 (381)
+..+++ ..+++..++.+|++++|+|+..
T Consensus 82 s~GeGL-------------------------------GNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGL-------------------------------GNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCc-------------------------------chHHHHhhhhcCeEEEEEEecC
Confidence 765532 2466778899999999998764
No 321
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.17 E-value=7.5e-12 Score=121.09 Aligned_cols=156 Identities=18% Similarity=0.111 Sum_probs=104.1
Q ss_pred ccccCCCCchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhh
Q 016883 48 LHKHYPLPLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSL 127 (381)
Q Consensus 48 ~~~~~~~~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~ 127 (381)
=++--+--.++++++....+.|..|+|+||+||++.+.. +-|..|.....+.+...+.++....... .
T Consensus 157 RDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~--------e~Wl~YLr~~~ptv~fkast~~~~~~~~----~ 224 (435)
T KOG2484|consen 157 RDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVV--------EKWLVYLRREGPTVAFKASTQMQNSNSK----N 224 (435)
T ss_pred cCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHH--------HHHHHHHHhhCCcceeeccccccccccc----c
Confidence 344455668999999999999999999999999976533 4457777777777777666555432200 0
Q ss_pred hhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEE
Q 016883 128 LSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSF 207 (381)
Q Consensus 128 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~ 207 (381)
++... .. ..+...+...+...... -....+++++|.|||||||+||+|.....+.++..||.|+..+...+
T Consensus 225 ~~~s~-----c~-gae~l~~~lgny~~~~~--lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L- 295 (435)
T KOG2484|consen 225 LQSSV-----CF-GAETLMKVLGNYCRKGE--LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL- 295 (435)
T ss_pred cccch-----hh-hHHHHHHHhcCcccccc--cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec-
Confidence 00000 00 00000000001000011 12356999999999999999999999998999999999998877554
Q ss_pred eCCceEEEEEcCCCCCccC
Q 016883 208 WGEHEFMLVDTGGVLNVSK 226 (381)
Q Consensus 208 ~~~~~~~liDTPG~~~~~~ 226 (381)
+..+.|+|.||+.-...
T Consensus 296 --dk~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 296 --DKKIRLLDSPGIVPPSI 312 (435)
T ss_pred --cCCceeccCCceeecCC
Confidence 67789999999875443
No 322
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.15 E-value=2.6e-10 Score=104.19 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=48.9
Q ss_pred ccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc---chhHH-Hh--hCCCceEEEecCCCCCHHH
Q 016883 273 SCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI---MQVSE-FW--SLGFSPLPISAISGTGTGE 346 (381)
Q Consensus 273 ~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~---~~~~~-~~--~~~~~~~~vSA~~g~gi~~ 346 (381)
.+..+.|+|+.+..... ....... ..|.++|+||+|+.+... ..... .. ....+++++||++|+|+++
T Consensus 124 ~~~~i~Vvd~~~~d~~~----~~~~~~~--~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~ 197 (207)
T TIGR00073 124 EHMRVVLLSVTEGDDKP----LKYPGMF--KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDE 197 (207)
T ss_pred cCeEEEEEecCcccchh----hhhHhHH--hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHH
Confidence 34455677776432221 1111112 678899999999975321 11111 11 2346899999999999999
Q ss_pred HHHHHHHHh
Q 016883 347 LLDLVCSEL 355 (381)
Q Consensus 347 l~~~i~~~l 355 (381)
+++++.++.
T Consensus 198 l~~~i~~~~ 206 (207)
T TIGR00073 198 WLEFLEGQV 206 (207)
T ss_pred HHHHHHHhh
Confidence 999998754
No 323
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.7e-10 Score=102.05 Aligned_cols=149 Identities=21% Similarity=0.232 Sum_probs=96.1
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
..|.++|.+++|||+|+-.|..+... ...|......+.+..+.....++|.||+.+.+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~----~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR------------------ 96 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR----GTVTSIEPNEATYRLGSENVTLVDLPGHSRLR------------------ 96 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc----CeeeeeccceeeEeecCcceEEEeCCCcHHHH------------------
Confidence 48999999999999999988876321 11122334444555566668999999997532
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhc---cccEEEEEEeCCCCC---ChhHHHHHHHHHHh---CCCCeEEEEEeCcc
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIE---ESCVIIFLVDGQAGL---TAADEEIADWLRKN---YMDKFIILAVNKCE 314 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~d~ii~VvD~~~~~---~~~~~~~~~~l~~~---~~~~p~ivV~NK~D 314 (381)
.....++. .+-.||||+|+..-. ...-.-++..+... -...|++++.||.|
T Consensus 97 --------------------~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqD 156 (238)
T KOG0090|consen 97 --------------------RKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQD 156 (238)
T ss_pred --------------------HHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchh
Confidence 23444444 788999999986522 22222334444443 24789999999999
Q ss_pred CCCcccc----hhH-----------------------------------HHhh---CCCceEEEecCCCCCHHHHHHHHH
Q 016883 315 SPRKGIM----QVS-----------------------------------EFWS---LGFSPLPISAISGTGTGELLDLVC 352 (381)
Q Consensus 315 l~~~~~~----~~~-----------------------------------~~~~---~~~~~~~vSA~~g~gi~~l~~~i~ 352 (381)
+.-.... +.+ ++.. ..+.+.+.|+++| +++++-+||.
T Consensus 157 l~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~ 235 (238)
T KOG0090|consen 157 LFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIR 235 (238)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHH
Confidence 8532110 000 0101 1335788999998 8999999998
Q ss_pred HHh
Q 016883 353 SEL 355 (381)
Q Consensus 353 ~~l 355 (381)
+++
T Consensus 236 ~~l 238 (238)
T KOG0090|consen 236 EAL 238 (238)
T ss_pred HhC
Confidence 764
No 324
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=3.4e-10 Score=114.29 Aligned_cols=149 Identities=21% Similarity=0.193 Sum_probs=99.7
Q ss_pred CCCCCEEEEEcCCCCChhHHHHHHhCCC------------------------------cccccCCCCcccccceeeEEeC
Q 016883 160 EHLLPRVAIVGRPNVGKSALFNRLVGGN------------------------------RAIVVDEPGVTRDRMYGRSFWG 209 (381)
Q Consensus 160 ~~~~~~v~l~G~~gvGKSSLin~L~~~~------------------------------~~~~~~~~~tt~~~~~~~~~~~ 209 (381)
......++++|+.++|||||+.+|+..- ........|.|.+.....+...
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 3356688999999999999999887531 0011112345555555555555
Q ss_pred CceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC---
Q 016883 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--- 286 (381)
Q Consensus 210 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~--- 286 (381)
...++|+|+||+.++.. .+......+|+.++|+|++.+.
T Consensus 254 ~~~~tliDaPGhkdFi~--------------------------------------nmi~g~sqaD~avLvvd~s~~~FE~ 295 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIP--------------------------------------NMISGASQADVAVLVVDASTGEFES 295 (603)
T ss_pred ceeEEEecCCCccccch--------------------------------------hhhccccccceEEEEEECCcchhhh
Confidence 66789999999987643 2334456899999999998742
Q ss_pred ----ChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcc--cchh----HH--------HhhCCCceEEEecCCCCCHHHH
Q 016883 287 ----TAADEEIADWLRKNYMDKFIILAVNKCESPRKG--IMQV----SE--------FWSLGFSPLPISAISGTGTGEL 347 (381)
Q Consensus 287 ----~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~--~~~~----~~--------~~~~~~~~~~vSA~~g~gi~~l 347 (381)
..+.+++...++.. .-..+||++||+|+.+=. ..+. .. +...++.++|||+.+|+|+-..
T Consensus 296 gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 296 GFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred ccCCCCchHHHHHHHHHc-CcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 33556666666654 346678899999998621 1111 11 1223458999999999998753
No 325
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=3.9e-10 Score=106.61 Aligned_cols=159 Identities=19% Similarity=0.140 Sum_probs=100.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCccc-------------------ccCCCCccc---ccceeeEEeCC------ceE
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI-------------------VVDEPGVTR---DRMYGRSFWGE------HEF 213 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~-------------------~~~~~~tt~---~~~~~~~~~~~------~~~ 213 (381)
...+|+++|+...|||||..+|.|-.... ....+.+.. ......+...+ +.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 35689999999999999999999863111 000111110 00000111111 357
Q ss_pred EEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC-ChhHHH
Q 016883 214 MLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEE 292 (381)
Q Consensus 214 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~-~~~~~~ 292 (381)
.|+|.||++- -|.+|+.. ..--|..++|+.++.+. ..+..+
T Consensus 89 SfVDaPGHe~---------------------------------LMATMLsG-----AAlMDgAlLvIaANEpcPQPQT~E 130 (415)
T COG5257 89 SFVDAPGHET---------------------------------LMATMLSG-----AALMDGALLVIAANEPCPQPQTRE 130 (415)
T ss_pred EEeeCCchHH---------------------------------HHHHHhcc-----hhhhcceEEEEecCCCCCCCchHH
Confidence 7999999952 11122222 23358999999998853 344555
Q ss_pred HHHHHHHhCCCCeEEEEEeCccCCCcccc-----hhHHH----hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 293 IADWLRKNYMDKFIILAVNKCESPRKGIM-----QVSEF----WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 293 ~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~-----~~~~~----~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.+-.+.-. .-+.+|+|-||+|+...+.. +..++ +..+.|++++||..+.|||-|++.|.++++.-.
T Consensus 131 Hl~AleIi-gik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 131 HLMALEII-GIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHHHhhh-ccceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 55444332 25788999999999985432 22222 234669999999999999999999999987544
No 326
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.1e-10 Score=98.63 Aligned_cols=151 Identities=20% Similarity=0.204 Sum_probs=105.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+++|.|--|+|||||++.|-.+...+-. .|.|++...+.+++.+++.+|..|+...+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhv----PTlHPTSE~l~Ig~m~ftt~DLGGH~qAr----------------- 78 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHV----PTLHPTSEELSIGGMTFTTFDLGGHLQAR----------------- 78 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccC----CCcCCChHHheecCceEEEEccccHHHHH-----------------
Confidence 348999999999999999999887654333 35555556678889999999999985322
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHH--hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK--NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~--~~~~~p~ivV~NK~Dl~~~~ 319 (381)
+.+..++..+|.+++.+|+.+.....+ +.-++.+.. .+.+.|+++..||+|.+...
T Consensus 79 ---------------------r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 79 ---------------------RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred ---------------------HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 245678889999999999987433322 222222222 23589999999999998754
Q ss_pred cchhHHHh----------------hCC---CceEEEecCCCCCHHHHHHHHHHHh
Q 016883 320 IMQVSEFW----------------SLG---FSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 320 ~~~~~~~~----------------~~~---~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
..+..... ..+ ..++.||...+.|.-+.+.|+.+++
T Consensus 138 se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 138 SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred cHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhhc
Confidence 33222210 011 1468899999999888888876653
No 327
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=9.2e-10 Score=107.86 Aligned_cols=116 Identities=19% Similarity=0.281 Sum_probs=88.9
Q ss_pred EEEEEcCCCCChhHHHHHHh--CCCccc-------------cc------CCCCcccccceeeEEeCCceEEEEEcCCCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLV--GGNRAI-------------VV------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~--~~~~~~-------------~~------~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~ 223 (381)
+.+++.+|.+|||||...|+ |..... .+ ...|....+...++.+.+..+.++||||+.+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeD 93 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHED 93 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccc
Confidence 78999999999999998875 221100 11 1123333334445677888999999999998
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+.. .+.+.+.-+|.+++|+|+..++..+.+.+++..+-. +
T Consensus 94 FSE--------------------------------------DTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR--~ 133 (528)
T COG4108 94 FSE--------------------------------------DTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR--D 133 (528)
T ss_pred cch--------------------------------------hHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhc--C
Confidence 765 444566789999999999999999999999988876 9
Q ss_pred CeEEEEEeCccCCCccc
Q 016883 304 KFIILAVNKCESPRKGI 320 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~~~~ 320 (381)
+|++-.+||.|....+-
T Consensus 134 iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 134 IPIFTFINKLDREGRDP 150 (528)
T ss_pred CceEEEeeccccccCCh
Confidence 99999999999876543
No 328
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.07 E-value=8.7e-10 Score=102.96 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=45.1
Q ss_pred ccEEEEEEeCCCCCChhH---HHH--HHHHHHhCCCCeEEEEEeCccCCCcccch------------------------h
Q 016883 273 SCVIIFLVDGQAGLTAAD---EEI--ADWLRKNYMDKFIILAVNKCESPRKGIMQ------------------------V 323 (381)
Q Consensus 273 ~d~ii~VvD~~~~~~~~~---~~~--~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~------------------------~ 323 (381)
.-++++++|+..-....+ ..+ +..+.+. +.|+|.|+||+|+.++.... .
T Consensus 123 ~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~--~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~ 200 (238)
T PF03029_consen 123 RLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL--ELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEE 200 (238)
T ss_dssp --EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH--TSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHH
T ss_pred ceEEEEEEecccccChhhHHHHHHHHHHHHhhC--CCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 457889999875433222 111 1223333 89999999999998732000 0
Q ss_pred HHH--hhCC-C-ceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 324 SEF--WSLG-F-SPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 324 ~~~--~~~~-~-~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
+.. ...+ . .++++|+.+++|+++|+..+.+.++
T Consensus 201 i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 201 IAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp HHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 000 0112 2 6899999999999999999988753
No 329
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.07 E-value=1.6e-09 Score=98.58 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=52.3
Q ss_pred ccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCc--ccch----hHHHhhCCCceEEEecCCCCCHHH
Q 016883 273 SCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK--GIMQ----VSEFWSLGFSPLPISAISGTGTGE 346 (381)
Q Consensus 273 ~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~--~~~~----~~~~~~~~~~~~~vSA~~g~gi~~ 346 (381)
+|.++.|+|+.+...... . ....+ ...-++++||+|+.+. ...+ .......+.+++++||++|+|+++
T Consensus 113 ~~~~i~vvD~~~~~~~~~-~----~~~qi-~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR-K----GGPGI-TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDT 186 (199)
T ss_pred hCcEEEEEEcchhhhhhh-h----hHhHh-hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHH
Confidence 578999999986444221 1 11111 3445899999999853 1111 122224467899999999999999
Q ss_pred HHHHHHHHhh
Q 016883 347 LLDLVCSELK 356 (381)
Q Consensus 347 l~~~i~~~l~ 356 (381)
++++|.+++.
T Consensus 187 l~~~i~~~~~ 196 (199)
T TIGR00101 187 VIDWIEHYAL 196 (199)
T ss_pred HHHHHHhhcC
Confidence 9999987653
No 330
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.06 E-value=1e-10 Score=108.53 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=56.4
Q ss_pred HhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc-c----hhHHHhh---C--CCceEEEec
Q 016883 269 AIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-M----QVSEFWS---L--GFSPLPISA 338 (381)
Q Consensus 269 ~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~-~----~~~~~~~---~--~~~~~~vSA 338 (381)
...-+|.+++|+-+..+-..+- ++.....++-++|+||+|....+. . ....+.. . ..|++.+||
T Consensus 139 I~~~aD~~v~v~~Pg~GD~iQ~------~KaGimEiaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA 212 (266)
T PF03308_consen 139 IADMADTVVLVLVPGLGDEIQA------IKAGIMEIADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSA 212 (266)
T ss_dssp HHTTSSEEEEEEESSTCCCCCT------B-TTHHHH-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBT
T ss_pred HHHhcCeEEEEecCCCccHHHH------HhhhhhhhccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEe
Confidence 4467999999998765433332 111112456699999999544221 1 1111111 1 238899999
Q ss_pred CCCCCHHHHHHHHHHHhhhcccccchhh
Q 016883 339 ISGTGTGELLDLVCSELKKVEVCIGFLL 366 (381)
Q Consensus 339 ~~g~gi~~l~~~i~~~l~~~~~~~~~~~ 366 (381)
.+|+|+++|++.|.++......++.+..
T Consensus 213 ~~~~Gi~eL~~~i~~~~~~l~~sg~~~~ 240 (266)
T PF03308_consen 213 LEGEGIDELWEAIDEHRDYLKESGELEE 240 (266)
T ss_dssp TTTBSHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcchHHH
Confidence 9999999999999998777666655543
No 331
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.04 E-value=7.8e-10 Score=111.66 Aligned_cols=151 Identities=17% Similarity=0.120 Sum_probs=105.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCC----CcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP----GVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~----~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
..||+++|..|+||||||-+|+.++. +...| ..+.. ..+........++||+.-.+. .
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef--~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~~~----~--------- 70 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEF--VDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDSDD----R--------- 70 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhc--cccccccCCccccC---CccCcCcCceEEEecccccch----h---------
Confidence 56999999999999999999998863 22222 22222 222334455789999743221 0
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCCh--hHHHHHHHHHHhC---CCCeEEEEEeCc
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRKNY---MDKFIILAVNKC 313 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~--~~~~~~~~l~~~~---~~~p~ivV~NK~ 313 (381)
......++++|++++|+.++++.+. ....|+-.+++.. .+.|+|+|.||+
T Consensus 71 -------------------------~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~ 125 (625)
T KOG1707|consen 71 -------------------------LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKS 125 (625)
T ss_pred -------------------------HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeecc
Confidence 1345667899999999988875443 3456888888866 789999999999
Q ss_pred cCCCcccc--hh-----HHHhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 314 ESPRKGIM--QV-----SEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 314 Dl~~~~~~--~~-----~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
|....... +. +..+..--.+|+|||++-.++.+++-...+.+-
T Consensus 126 d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 126 DNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSELFYYAQKAVI 175 (625)
T ss_pred CCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhhhhhheee
Confidence 99775443 21 111111226899999999999999988776554
No 332
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.3e-09 Score=95.73 Aligned_cols=156 Identities=17% Similarity=0.124 Sum_probs=105.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcc---cccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT---RDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt---~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
.++++++|..|.||+|++++.+...+.. .++.|+ .+.....-..+..++..|||.|.+......+
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~--~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd---------- 77 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEK--TYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD---------- 77 (216)
T ss_pred eEEEEEecCCcccccchhhhhhccccee--cccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc----------
Confidence 5689999999999999999987665322 222222 2221111111225688999999986554433
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
.++-.+.+.++++|+...++... ..|.+.+.+...++|+++++||.|....
T Consensus 78 ----------------------------gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r 129 (216)
T KOG0096|consen 78 ----------------------------GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKAR 129 (216)
T ss_pred ----------------------------ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecccc
Confidence 22234567778889888777766 3455555554458999999999998665
Q ss_pred c-cchhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 G-IMQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~-~~~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
. ......+ ...+..++++||++..|++.-|-|+.+.+...
T Consensus 130 ~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 130 KVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred ccccccceeeecccceeEEeecccccccccchHHHhhhhcCC
Confidence 4 2222222 34577899999999999999999999887643
No 333
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.02 E-value=6e-09 Score=100.65 Aligned_cols=145 Identities=15% Similarity=0.175 Sum_probs=92.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCccccc----CCCC---cccccceee--EEeCCc--eEEEEEcCCCCCccCCCchh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVV----DEPG---VTRDRMYGR--SFWGEH--EFMLVDTGGVLNVSKSQPNI 231 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~----~~~~---tt~~~~~~~--~~~~~~--~~~liDTPG~~~~~~~~~~~ 231 (381)
.++|+++|++|.|||||+|.|++....... ..+. .|....... +.-++. .++++||||++++-.. ...
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN-s~~ 101 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN-SKC 101 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc-ccc
Confidence 679999999999999999999987421111 1111 122222222 222333 4679999999986543 212
Q ss_pred hhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHh--------------ccccEEEEEEeCCC-CCChhHHHHHHH
Q 016883 232 MEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAI--------------EESCVIIFLVDGQA-GLTAADEEIADW 296 (381)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------~~~d~ii~VvD~~~-~~~~~~~~~~~~ 296 (381)
++. +..+++.+...++ .++|+|+|.+-++. ++...|.++++.
T Consensus 102 we~-----------------------I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ 158 (373)
T COG5019 102 WEP-----------------------IVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKR 158 (373)
T ss_pred HHH-----------------------HHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHH
Confidence 211 2223333333332 35899999998654 899999888888
Q ss_pred HHHhCCCCeEEEEEeCccCCCcccchhHH------HhhCCCceE
Q 016883 297 LRKNYMDKFIILAVNKCESPRKGIMQVSE------FWSLGFSPL 334 (381)
Q Consensus 297 l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~------~~~~~~~~~ 334 (381)
+.+ .+.+|-|+.|+|......+...+ ....++++|
T Consensus 159 ls~---~vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf 199 (373)
T COG5019 159 LSK---RVNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVF 199 (373)
T ss_pred Hhc---ccCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCcee
Confidence 876 68889999999998865544332 234566666
No 334
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=8.8e-10 Score=103.07 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=107.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC----------ccccc-----CCCCcccccceeeEEeCCceEEEEEcCCCCCccCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN----------RAIVV-----DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~----------~~~~~-----~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 227 (381)
..+|+.+|+.+.|||||..+++..- +..+. ...+.|....+..+...+..+..+|+||+.+.-+
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK- 90 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK- 90 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH-
Confidence 4589999999999999998886431 11122 2236677776666777788899999999976321
Q ss_pred CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeE-
Q 016883 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI- 306 (381)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~- 306 (381)
..+....+.|..|+|+.+.++...+.++.+-..++. +.|.
T Consensus 91 -------------------------------------NMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqv--Gvp~i 131 (394)
T COG0050 91 -------------------------------------NMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--GVPYI 131 (394)
T ss_pred -------------------------------------HHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhc--CCcEE
Confidence 222334568999999999999999998887777766 7765
Q ss_pred EEEEeCccCCCcccch-hH-----HH-hhC-----CCceEEEecCCC-C-------CHHHHHHHHHHHhhhcccccc
Q 016883 307 ILAVNKCESPRKGIMQ-VS-----EF-WSL-----GFSPLPISAISG-T-------GTGELLDLVCSELKKVEVCIG 363 (381)
Q Consensus 307 ivV~NK~Dl~~~~~~~-~~-----~~-~~~-----~~~~~~vSA~~g-~-------gi~~l~~~i~~~l~~~~~~~~ 363 (381)
++++||+|+.++..+. .. .+ ..+ ..|++.-||... + .|.+|++.+.++++...-..+
T Consensus 132 vvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~d 208 (394)
T COG0050 132 VVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDID 208 (394)
T ss_pred EEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCccc
Confidence 5569999999854322 11 11 222 336666666542 2 245666666666654443333
No 335
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.02 E-value=1.3e-09 Score=103.82 Aligned_cols=52 Identities=17% Similarity=0.122 Sum_probs=38.5
Q ss_pred CCeEEEEEeCccCCCcc--cch-hHH---HhhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 303 DKFIILAVNKCESPRKG--IMQ-VSE---FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 303 ~~p~ivV~NK~Dl~~~~--~~~-~~~---~~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
..+.++|+||+|+.+.. ..+ ... ......+++++||++|+|+++|.+||.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56779999999998632 111 111 12235689999999999999999999874
No 336
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.00 E-value=1.5e-09 Score=102.20 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=59.2
Q ss_pred hccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc-----chhHHH-----hhC--CCceEEEe
Q 016883 270 IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-----MQVSEF-----WSL--GFSPLPIS 337 (381)
Q Consensus 270 l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~-----~~~~~~-----~~~--~~~~~~vS 337 (381)
..-+|.+++|.-+..+-..+ .++.....+.-++|+||.|....+. ...+.. ... ..|++.+|
T Consensus 162 ~~~aDt~~~v~~pg~GD~~Q------~iK~GimEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~ 235 (323)
T COG1703 162 ANMADTFLVVMIPGAGDDLQ------GIKAGIMEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTS 235 (323)
T ss_pred hhhcceEEEEecCCCCcHHH------HHHhhhhhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEee
Confidence 35689999998765443222 2334334677899999999644321 111111 112 33789999
Q ss_pred cCCCCCHHHHHHHHHHHhhhcccccch
Q 016883 338 AISGTGTGELLDLVCSELKKVEVCIGF 364 (381)
Q Consensus 338 A~~g~gi~~l~~~i~~~l~~~~~~~~~ 364 (381)
|.+|+|+++|++.+.++.+.....+.+
T Consensus 236 A~~g~Gi~~L~~ai~~h~~~~~~sg~~ 262 (323)
T COG1703 236 ALEGEGIDELWDAIEDHRKFLTESGLF 262 (323)
T ss_pred eccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999998876665543
No 337
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.96 E-value=6e-09 Score=100.29 Aligned_cols=104 Identities=20% Similarity=0.204 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH
Q 016883 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (381)
Q Consensus 212 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~ 291 (381)
-++|+|..|++.+-+ ++.||++|. ..|..++++.++.++.....
T Consensus 220 viTFIDLAGHEkYLK-----------TTvFGMTGH-------------------------~PDf~MLMiGaNaGIiGmTK 263 (641)
T KOG0463|consen 220 VITFIDLAGHEKYLK-----------TTVFGMTGH-------------------------MPDFTMLMIGANAGIIGMTK 263 (641)
T ss_pred eEEEEeccchhhhhh-----------eeeeccccC-------------------------CCCceEEEecccccceeccH
Confidence 468999999975432 456777766 57899999999999888888
Q ss_pred HHHHHHHHhCCCCeEEEEEeCccCCCcccchhHH-------------------------------HhhC-CCceEEEecC
Q 016883 292 EIADWLRKNYMDKFIILAVNKCESPRKGIMQVSE-------------------------------FWSL-GFSPLPISAI 339 (381)
Q Consensus 292 ~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~-------------------------------~~~~-~~~~~~vSA~ 339 (381)
+.+...... .+|+++|++|+|+++.+++++.- +... -.|+|.+|..
T Consensus 264 EHLgLALaL--~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNV 341 (641)
T KOG0463|consen 264 EHLGLALAL--HVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNV 341 (641)
T ss_pred Hhhhhhhhh--cCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccc
Confidence 888877776 99999999999999876554321 0001 1288999999
Q ss_pred CCCCHHHHHHHHHH
Q 016883 340 SGTGTGELLDLVCS 353 (381)
Q Consensus 340 ~g~gi~~l~~~i~~ 353 (381)
+|+|++-|..++.-
T Consensus 342 tG~NL~LLkmFLNl 355 (641)
T KOG0463|consen 342 TGTNLPLLKMFLNL 355 (641)
T ss_pred cCCChHHHHHHHhh
Confidence 99999988887654
No 338
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.95 E-value=4.4e-09 Score=91.47 Aligned_cols=90 Identities=19% Similarity=0.191 Sum_probs=67.2
Q ss_pred HHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH-HH-hhCCCceEEEecCCCCC
Q 016883 266 ATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-EF-WSLGFSPLPISAISGTG 343 (381)
Q Consensus 266 ~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~-~~-~~~~~~~~~vSA~~g~g 343 (381)
....+..+|++++|+|+.++....+.++...+... ++|+++|+||+|+.+....... .. ...+.+++++||++|.|
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~g 83 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLEL--GKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLG 83 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhC--CCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccccc
Confidence 33455679999999999887766666666655544 7999999999999754322221 11 22456889999999999
Q ss_pred HHHHHHHHHHHhhh
Q 016883 344 TGELLDLVCSELKK 357 (381)
Q Consensus 344 i~~l~~~i~~~l~~ 357 (381)
+++|++.+.+.++.
T Consensus 84 i~~L~~~l~~~~~~ 97 (156)
T cd01859 84 TKILRRTIKELAKI 97 (156)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988764
No 339
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2.5e-09 Score=108.95 Aligned_cols=115 Identities=24% Similarity=0.301 Sum_probs=83.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCccccc----------------CCCCcccccceeeEEeCC-----ceEEEEEcCC
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVV----------------DEPGVTRDRMYGRSFWGE-----HEFMLVDTGG 220 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~----------------~~~~tt~~~~~~~~~~~~-----~~~~liDTPG 220 (381)
....|+++|+-++|||+|+..|......... ...+++...+..++...+ .-+.++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 3568999999999999999999876321110 011222333322222222 2367999999
Q ss_pred CCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHh
Q 016883 221 VLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN 300 (381)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~ 300 (381)
+.++.. .+...+..+|++++|+|+..+.......+++..-+.
T Consensus 207 HVnF~D--------------------------------------E~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~ 248 (971)
T KOG0468|consen 207 HVNFSD--------------------------------------ETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN 248 (971)
T ss_pred cccchH--------------------------------------HHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc
Confidence 998654 455677899999999999999998888888877776
Q ss_pred CCCCeEEEEEeCccCC
Q 016883 301 YMDKFIILAVNKCESP 316 (381)
Q Consensus 301 ~~~~p~ivV~NK~Dl~ 316 (381)
+.|+++|+||+|.+
T Consensus 249 --~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 249 --RLPIVVVINKVDRL 262 (971)
T ss_pred --cCcEEEEEehhHHH
Confidence 89999999999963
No 340
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.93 E-value=2.1e-09 Score=101.61 Aligned_cols=65 Identities=40% Similarity=0.403 Sum_probs=50.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC-----CcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG-----NRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~-----~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~ 227 (381)
...+.++|-||+|||||||++... ..+.++..||.|+.......-.....++++||||+.-.+-.
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~ 212 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIV 212 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCC
Confidence 568999999999999999987643 45678899999987765433334556899999999865443
No 341
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=9.5e-09 Score=98.82 Aligned_cols=132 Identities=20% Similarity=0.262 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcc--cccCCCCcccccc----------ee-eEEeC------C-----------
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRM----------YG-RSFWG------E----------- 210 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~--~~~~~~~tt~~~~----------~~-~~~~~------~----------- 210 (381)
...+.|+++|+-..||||+|+.|+...+. .++..|.|..-.. .+ .+.++ +
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 45789999999999999999999988643 2233331111000 00 00000 0
Q ss_pred -----------ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEE
Q 016883 211 -----------HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFL 279 (381)
Q Consensus 211 -----------~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~V 279 (381)
..+.++||||+..+.+++-. +||++ ......+..+||.|+++
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQris-------------R~ydF--------------~~v~~WFaeR~D~IiLl 188 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRIS-------------RGYDF--------------TGVLEWFAERVDRIILL 188 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhccc-------------ccCCh--------------HHHHHHHHHhccEEEEE
Confidence 25789999999887664321 33333 23455677899999999
Q ss_pred EeCCC-CCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccc
Q 016883 280 VDGQA-GLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 280 vD~~~-~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
+|+.. .++.+..+++..++.. .-.+-+|+||+|.++..++
T Consensus 189 fD~hKLDIsdEf~~vi~aLkG~--EdkiRVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 189 FDAHKLDISDEFKRVIDALKGH--EDKIRVVLNKADQVDTQQL 229 (532)
T ss_pred echhhccccHHHHHHHHHhhCC--cceeEEEeccccccCHHHH
Confidence 99875 4555557788888876 7888999999999876543
No 342
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.1e-08 Score=99.37 Aligned_cols=131 Identities=17% Similarity=0.174 Sum_probs=85.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCccc------ccCCCCcccccceee--EEeCCc--eEEEEEcCCCCCccCCCchhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI------VVDEPGVTRDRMYGR--SFWGEH--EFMLVDTGGVLNVSKSQPNIM 232 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~------~~~~~~tt~~~~~~~--~~~~~~--~~~liDTPG~~~~~~~~~~~~ 232 (381)
.++++++|.+|.|||||||.|+...... ....+..|....... +.-+|. .++++||||+++.-.... .+
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~-~w 99 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN-CW 99 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc-cc
Confidence 5799999999999999999999874221 111222233332222 222333 467999999987644221 11
Q ss_pred hhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHh-------------ccccEEEEEEeCCC-CCChhHHHHHHHHH
Q 016883 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAI-------------EESCVIIFLVDGQA-GLTAADEEIADWLR 298 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------------~~~d~ii~VvD~~~-~~~~~~~~~~~~l~ 298 (381)
+.+..+++.+...++ .++|+|+|.+.+.. ++...|.++++.+.
T Consensus 100 -----------------------~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~ 156 (366)
T KOG2655|consen 100 -----------------------RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS 156 (366)
T ss_pred -----------------------hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh
Confidence 112233344444433 26899999998765 69999988888887
Q ss_pred HhCCCCeEEEEEeCccCCCccc
Q 016883 299 KNYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 299 ~~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
. .+.+|-|+-|+|...+..
T Consensus 157 ~---~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 157 K---KVNLIPVIAKADTLTKDE 175 (366)
T ss_pred c---cccccceeeccccCCHHH
Confidence 6 788899999999876543
No 343
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=1.4e-08 Score=92.62 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=83.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccC-------CCCcc-cccceeeEEeCCc--eEEEEEcCCCCCccCCCchhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVD-------EPGVT-RDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIM 232 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~-------~~~tt-~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~ 232 (381)
.++|+++|++|.|||||+|.|...+....+. ++.|+ .+.....+.-++. +++++||||+++.-.. ++.+
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN-~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN-DNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc-cchh
Confidence 6799999999999999999998765322111 12222 2223333444444 4679999999875332 2222
Q ss_pred hhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHH----HHh--ccccEEEEEEeCCC-CCChhHHHHHHHHHHhCCCCe
Q 016883 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQAT----AAI--EESCVIIFLVDGQA-GLTAADEEIADWLRKNYMDKF 305 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l--~~~d~ii~VvD~~~-~~~~~~~~~~~~l~~~~~~~p 305 (381)
+.+- ........+++.+... +.+ ..+|+|+|.+.++. .+...|.++++.+.+ -..
T Consensus 125 ePI~---------------kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~---vvN 186 (336)
T KOG1547|consen 125 EPIE---------------KYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE---VVN 186 (336)
T ss_pred HHHH---------------HHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh---hhe
Confidence 2221 1111122222222111 112 24889999998765 678888888888877 577
Q ss_pred EEEEEeCccCCC
Q 016883 306 IILAVNKCESPR 317 (381)
Q Consensus 306 ~ivV~NK~Dl~~ 317 (381)
++-|+-|+|.+.
T Consensus 187 vvPVIakaDtlT 198 (336)
T KOG1547|consen 187 VVPVIAKADTLT 198 (336)
T ss_pred eeeeEeeccccc
Confidence 888899999764
No 344
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.85 E-value=4.4e-09 Score=93.51 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=51.4
Q ss_pred cc-EEEEEEeCCCCCChhHHHHHHHHHHhC--CCCeEEEEEeCccCCCcccc--hhHH----HhhCCCceEEEecCCCCC
Q 016883 273 SC-VIIFLVDGQAGLTAADEEIADWLRKNY--MDKFIILAVNKCESPRKGIM--QVSE----FWSLGFSPLPISAISGTG 343 (381)
Q Consensus 273 ~d-~ii~VvD~~~~~~~~~~~~~~~l~~~~--~~~p~ivV~NK~Dl~~~~~~--~~~~----~~~~~~~~~~vSA~~g~g 343 (381)
.| +-|+|+|+..+...-. +.. ....-++|+||.|+.+.-.. +.+. ....+.|++++|+++|+|
T Consensus 117 ~d~~~v~VidvteGe~~P~--------K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G 188 (202)
T COG0378 117 GDHLRVVVIDVTEGEDIPR--------KGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEG 188 (202)
T ss_pred hhceEEEEEECCCCCCCcc--------cCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcC
Confidence 44 7888999887543221 100 02256899999999874322 3332 234567999999999999
Q ss_pred HHHHHHHHHHHh
Q 016883 344 TGELLDLVCSEL 355 (381)
Q Consensus 344 i~~l~~~i~~~l 355 (381)
++++++|+....
T Consensus 189 ~~~~~~~i~~~~ 200 (202)
T COG0378 189 LDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHhhc
Confidence 999999987654
No 345
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.79 E-value=2.7e-08 Score=86.67 Aligned_cols=90 Identities=21% Similarity=0.313 Sum_probs=67.4
Q ss_pred HHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch-hHHHhhCCC--ceEEEecCCCCC
Q 016883 267 TAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEFWSLGF--SPLPISAISGTG 343 (381)
Q Consensus 267 ~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~-~~~~~~~~~--~~~~vSA~~g~g 343 (381)
+..+..+|++++|+|+..+....+..+.+.+.....++|+++|+||+|+.+++... ......... .++++||++|.|
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~ 82 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG 82 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccccc
Confidence 45678999999999999887777777777777643359999999999997654322 122222222 358899999999
Q ss_pred HHHHHHHHHHHhh
Q 016883 344 TGELLDLVCSELK 356 (381)
Q Consensus 344 i~~l~~~i~~~l~ 356 (381)
+++|++++.+.+.
T Consensus 83 ~~~L~~~l~~~~~ 95 (157)
T cd01858 83 KGSLIQLLRQFSK 95 (157)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987653
No 346
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.74 E-value=5.1e-08 Score=94.36 Aligned_cols=81 Identities=15% Similarity=0.093 Sum_probs=62.7
Q ss_pred ccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh----H----------------------
Q 016883 271 EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV----S---------------------- 324 (381)
Q Consensus 271 ~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~----~---------------------- 324 (381)
++.|..++|+.++++.+...++.+..+... +.|+|+|+||+|+.+++..+. .
T Consensus 225 qk~dYglLvVaAddG~~~~tkEHLgi~~a~--~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~ 302 (527)
T COG5258 225 QKVDYGLLVVAADDGVTKMTKEHLGIALAM--ELPVIVVVTKIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVL 302 (527)
T ss_pred cccceEEEEEEccCCcchhhhHhhhhhhhh--cCCEEEEEEecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHH
Confidence 469999999999999999999999888877 999999999999987532110 0
Q ss_pred --HHhh--C-CCceEEEecCCCCCHHHHHHHHHH
Q 016883 325 --EFWS--L-GFSPLPISAISGTGTGELLDLVCS 353 (381)
Q Consensus 325 --~~~~--~-~~~~~~vSA~~g~gi~~l~~~i~~ 353 (381)
.... . -.|+|.+|+.+|+|++-|.+.+..
T Consensus 303 aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 303 AAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred hhhhhhcCCceEEEEEEecccCccHHHHHHHHHh
Confidence 0001 1 238999999999999877666543
No 347
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.72 E-value=5.1e-08 Score=95.88 Aligned_cols=89 Identities=26% Similarity=0.215 Sum_probs=71.9
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc-----------------eEEEEEcCCCCCccC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-----------------EFMLVDTGGVLNVSK 226 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~-----------------~~~liDTPG~~~~~~ 226 (381)
.+++++|.||+|||||+|+|++.....+.++|+||.....+.+.+.+. .+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 488999999999999999999987447889999999998887776652 578999999987654
Q ss_pred CCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCC
Q 016883 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~ 283 (381)
...+ +....+..++.+|++++|+++.
T Consensus 83 ~g~G-------------------------------lgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEG-------------------------------LGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccC-------------------------------cchHHHHHHHhCCEEEEEEeCC
Confidence 3331 1236677889999999999974
No 348
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=8.8e-08 Score=92.33 Aligned_cols=152 Identities=22% Similarity=0.245 Sum_probs=99.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCc------ccccCC-------CCcccccceee---------EEe------------
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNR------AIVVDE-------PGVTRDRMYGR---------SFW------------ 208 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~------~~~~~~-------~~tt~~~~~~~---------~~~------------ 208 (381)
..+++++|--.+|||||+-.|...+. +...-. .+.|....... +.+
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 45899999999999999998876541 000000 01111110000 011
Q ss_pred CCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCCh
Q 016883 209 GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA 288 (381)
Q Consensus 209 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~ 288 (381)
...-++|+|..|+....+ ++..|..|| ..|..++|+.++.+++.
T Consensus 247 SSKlvTfiDLAGh~kY~~-----------TTi~gLtgY-------------------------~Ph~A~LvVsA~~Gi~~ 290 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQK-----------TTIHGLTGY-------------------------TPHFACLVVSADRGITW 290 (591)
T ss_pred hcceEEEeecccchhhhe-----------eeeeecccC-------------------------CCceEEEEEEcCCCCcc
Confidence 123478999999876433 122233333 47889999999999999
Q ss_pred hHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh-------------------------------HHHhhCCC-ceEEE
Q 016883 289 ADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV-------------------------------SEFWSLGF-SPLPI 336 (381)
Q Consensus 289 ~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~-------------------------------~~~~~~~~-~~~~v 336 (381)
..++.+..+... ++|++++++|+|+.++...+. .+....++ |+|.+
T Consensus 291 tTrEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~v 368 (591)
T KOG1143|consen 291 TTREHLGLIAAL--NIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAV 368 (591)
T ss_pred ccHHHHHHHHHh--CCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEE
Confidence 999999999888 999999999999987521110 01112233 88999
Q ss_pred ecCCCCCHHHHHHHHH
Q 016883 337 SAISGTGTGELLDLVC 352 (381)
Q Consensus 337 SA~~g~gi~~l~~~i~ 352 (381)
|+.+|+|++-|...+.
T Consensus 369 SsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 369 SSVSGEGLRLLRTFLN 384 (591)
T ss_pred eecCccchhHHHHHHh
Confidence 9999999998766653
No 349
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.65 E-value=1.2e-07 Score=83.93 Aligned_cols=89 Identities=24% Similarity=0.225 Sum_probs=65.9
Q ss_pred HHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH-HH-hhCCCceEEEecCCC
Q 016883 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-EF-WSLGFSPLPISAISG 341 (381)
Q Consensus 264 ~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~-~~-~~~~~~~~~vSA~~g 341 (381)
++....+.++|++++|+|++.+....+..+...+ .++|.++|+||+|+.++...... +. ......++.+||++|
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~ 86 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSG 86 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCc
Confidence 3567788999999999999887766555544433 36899999999999755322111 22 223456899999999
Q ss_pred CCHHHHHHHHHHHhh
Q 016883 342 TGTGELLDLVCSELK 356 (381)
Q Consensus 342 ~gi~~l~~~i~~~l~ 356 (381)
+|+++|.+.+.+.+.
T Consensus 87 ~gi~~L~~~l~~~l~ 101 (171)
T cd01856 87 KGVKKLLKAAKKLLK 101 (171)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999998763
No 350
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.64 E-value=1.7e-07 Score=84.25 Aligned_cols=90 Identities=20% Similarity=0.102 Sum_probs=63.3
Q ss_pred HHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch-hH-HH------hhCC---C
Q 016883 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VS-EF------WSLG---F 331 (381)
Q Consensus 263 ~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~-~~-~~------~~~~---~ 331 (381)
......++..+|++++|+|+.+........+ .....++|+++|+||+|+.+..... .. .+ ...+ .
T Consensus 25 ~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l----~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (190)
T cd01855 25 LNLLSSISPKKALVVHVVDIFDFPGSLIPRL----RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPK 100 (190)
T ss_pred HHHHHhcccCCcEEEEEEECccCCCccchhH----HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcc
Confidence 3456677889999999999987554443333 1122378999999999997543211 11 11 1122 2
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 332 SPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 332 ~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
+++++||++|+|+++|+++|.+.++
T Consensus 101 ~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 101 DVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999999774
No 351
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=6.2e-07 Score=92.44 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=41.5
Q ss_pred HHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 265 QATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 265 ~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
..-.....+|++|||+.+.+.++..+.+++....+. +..++|+.||.|....
T Consensus 225 wid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~--KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 225 WIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE--KPNIFILNNKWDASAS 276 (749)
T ss_pred HHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc--CCcEEEEechhhhhcc
Confidence 444556789999999999988888888888888775 5667777889998654
No 352
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=9.6e-08 Score=99.09 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=84.5
Q ss_pred CCCCCEEEEEcCCCCChhHHHHHHhCCCcccccC----------------CCCcccccceeeEEeCCceEEEEEcCCCCC
Q 016883 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVD----------------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (381)
Q Consensus 160 ~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~----------------~~~tt~~~~~~~~~~~~~~~~liDTPG~~~ 223 (381)
..+..+++++.+...|||||...|...+- .++. ..|.|..........++..+.++|+||+.+
T Consensus 6 ~~~irn~~~vahvdhgktsladsl~asng-vis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 6 SEGIRNICLVAHVDHGKTSLADSLVASNG-VISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCceeEEEEEEEecCCccchHHHHHhhcc-EechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 34566899999999999999999886542 1111 123333333323344677789999999998
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+.. ....+...+|..++++|+..+...+...+++..-.. +
T Consensus 85 f~s--------------------------------------evssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~--~ 124 (887)
T KOG0467|consen 85 FSS--------------------------------------EVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE--G 124 (887)
T ss_pred hhh--------------------------------------hhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc--c
Confidence 765 223455679999999999999999998888865544 7
Q ss_pred CeEEEEEeCccC
Q 016883 304 KFIILAVNKCES 315 (381)
Q Consensus 304 ~p~ivV~NK~Dl 315 (381)
...++|+||+|.
T Consensus 125 ~~~~lvinkidr 136 (887)
T KOG0467|consen 125 LKPILVINKIDR 136 (887)
T ss_pred CceEEEEehhhh
Confidence 888999999994
No 353
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.58 E-value=2.1e-07 Score=79.73 Aligned_cols=80 Identities=21% Similarity=0.246 Sum_probs=61.0
Q ss_pred HHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh-HH-HhhCCCceEEEecCCC
Q 016883 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV-SE-FWSLGFSPLPISAISG 341 (381)
Q Consensus 264 ~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~-~~-~~~~~~~~~~vSA~~g 341 (381)
+.+...+..+|++++|+|+.++....+..+.+.+.+...++|+++|+||+|+.++..... .. +...+.+++++||++|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~ 82 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKE 82 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 366788899999999999998888777777777766435899999999999976543222 12 2234568899999988
Q ss_pred CC
Q 016883 342 TG 343 (381)
Q Consensus 342 ~g 343 (381)
.+
T Consensus 83 ~~ 84 (141)
T cd01857 83 NA 84 (141)
T ss_pred Cc
Confidence 74
No 354
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.57 E-value=1.9e-07 Score=89.29 Aligned_cols=90 Identities=23% Similarity=0.261 Sum_probs=73.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC-----------------ceEEEEEcCCCCCcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-----------------HEFMLVDTGGVLNVS 225 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~~~liDTPG~~~~~ 225 (381)
..+++++|.||||||||+|+|+.... ...++|++|.++....+...+ ..+.++|++|+..+.
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a-~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKA-GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCC-CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 55999999999999999999999875 489999999999887766543 147899999999877
Q ss_pred CCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC
Q 016883 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~ 284 (381)
+..+++ ....+..++.+|.++.|+++..
T Consensus 99 s~G~GL-------------------------------GN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGL-------------------------------GNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCc-------------------------------hHHHHHhhhhccceeEEEEecC
Confidence 766532 2356678899999999998654
No 355
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.57 E-value=1.7e-07 Score=85.23 Aligned_cols=145 Identities=18% Similarity=0.160 Sum_probs=95.7
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC-ceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.+|+++|.+|+||||+=..+.....+.....+|.|.+..+..+.+-| --+.+||+.|++.+-
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fm----------------- 67 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFM----------------- 67 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHH-----------------
Confidence 48999999999999987766655545555667777777776665444 567799999986321
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHH----HHHHHhCCCCeEEEEEeCccCCCc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA----DWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~----~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
..++..+-...+++.+++++|+|+.....+.|.... +.+.+.-+...+++.++|+|+...
T Consensus 68 ----------------en~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 68 ----------------ENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred ----------------HHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 111222222456889999999999876666665443 334444467778999999999875
Q ss_pred ccchhHH------H----hhCCCceEEEecCCC
Q 016883 319 GIMQVSE------F----WSLGFSPLPISAISG 341 (381)
Q Consensus 319 ~~~~~~~------~----~~~~~~~~~vSA~~g 341 (381)
+..+..- . ...+..++++|-.+.
T Consensus 132 d~r~~if~~r~~~l~~~s~~~~~~~f~TsiwDe 164 (295)
T KOG3886|consen 132 DARELIFQRRKEDLRRLSRPLECKCFPTSIWDE 164 (295)
T ss_pred chHHHHHHHHHHHHHHhcccccccccccchhhH
Confidence 5433221 0 123446677776653
No 356
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.56 E-value=2.5e-07 Score=85.73 Aligned_cols=64 Identities=25% Similarity=0.337 Sum_probs=47.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC--CcccccCCCCcccccceeeEEe---CCceEEEEEcCCCCCccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG--NRAIVVDEPGVTRDRMYGRSFW---GEHEFMLVDTGGVLNVSK 226 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~--~~~~~~~~~~tt~~~~~~~~~~---~~~~~~liDTPG~~~~~~ 226 (381)
...|.++|++++|||+|+|.|++. ..........+|+......... .+..+.++||||+.+...
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence 458999999999999999999998 5443444456777655444433 356799999999987543
No 357
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.56 E-value=3e-06 Score=85.20 Aligned_cols=120 Identities=22% Similarity=0.310 Sum_probs=68.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHh------CCCcccccCCCCc----------cccc--ceeeEE-----------------
Q 016883 163 LPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGV----------TRDR--MYGRSF----------------- 207 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~------~~~~~~~~~~~~t----------t~~~--~~~~~~----------------- 207 (381)
+..|+++|.+|+||||++..|. +..+..++..+.. +... ......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999886 3332222221110 0000 000000
Q ss_pred eCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCC
Q 016883 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT 287 (381)
Q Consensus 208 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~ 287 (381)
..+..+.|+||||... .....++++. .. .....+|.+++|+|+..+..
T Consensus 180 ~~~~DvViIDTaGr~~---~d~~lm~El~----------------------------~i-~~~~~p~e~lLVlda~~Gq~ 227 (429)
T TIGR01425 180 KENFDIIIVDTSGRHK---QEDSLFEEML----------------------------QV-AEAIQPDNIIFVMDGSIGQA 227 (429)
T ss_pred hCCCCEEEEECCCCCc---chHHHHHHHH----------------------------HH-hhhcCCcEEEEEeccccChh
Confidence 0245789999999643 2233334331 11 12345788999999875433
Q ss_pred hhHHHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 288 AADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 288 ~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
. ....+.+.+. -.+.-+|+||.|....
T Consensus 228 a--~~~a~~F~~~--~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 228 A--EAQAKAFKDS--VDVGSVIITKLDGHAK 254 (429)
T ss_pred H--HHHHHHHHhc--cCCcEEEEECccCCCC
Confidence 2 3344555443 3467888999997654
No 358
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=3.2e-08 Score=96.36 Aligned_cols=123 Identities=16% Similarity=0.149 Sum_probs=92.6
Q ss_pred CCCCCEEEEEcCCCCChhHHHHHHhCCCc-----------------ccccCCCCcccccceeeEEeCCceEEEEEcCCCC
Q 016883 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNR-----------------AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222 (381)
Q Consensus 160 ~~~~~~v~l~G~~gvGKSSLin~L~~~~~-----------------~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~ 222 (381)
.....+|+++.+..+||||...+++.-.- .......|.|.......+.|.|.++.++||||+.
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 34466899999999999999988764210 0112224566666666788899999999999999
Q ss_pred CccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCC
Q 016883 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~ 302 (381)
+++-. ..+.++.-|+++.|+|++.+...+...+.+...+.
T Consensus 114 df~le--------------------------------------verclrvldgavav~dasagve~qtltvwrqadk~-- 153 (753)
T KOG0464|consen 114 DFRLE--------------------------------------VERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF-- 153 (753)
T ss_pred eEEEE--------------------------------------HHHHHHHhcCeEEEEeccCCcccceeeeehhcccc--
Confidence 87642 23455677999999999999888887766666666
Q ss_pred CCeEEEEEeCccCCCcccch
Q 016883 303 DKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 303 ~~p~ivV~NK~Dl~~~~~~~ 322 (381)
++|-++.+||+|........
T Consensus 154 ~ip~~~finkmdk~~anfe~ 173 (753)
T KOG0464|consen 154 KIPAHCFINKMDKLAANFEN 173 (753)
T ss_pred CCchhhhhhhhhhhhhhhhh
Confidence 89999999999987654433
No 359
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.55 E-value=3.4e-07 Score=87.47 Aligned_cols=91 Identities=20% Similarity=0.275 Sum_probs=69.2
Q ss_pred HHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH-H-HhhCCCceEEEecCCC
Q 016883 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-E-FWSLGFSPLPISAISG 341 (381)
Q Consensus 264 ~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~-~-~~~~~~~~~~vSA~~g 341 (381)
++....+..+|++++|+|+..+.+..+..+.+.+ .++|+++|+||+|+.+....... . +...+.+++.+||+++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~ 88 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKG 88 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 4566778899999999999988877776665555 27899999999999754322221 1 1223557899999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 016883 342 TGTGELLDLVCSELKKV 358 (381)
Q Consensus 342 ~gi~~l~~~i~~~l~~~ 358 (381)
.|+++|++.+.+.+++.
T Consensus 89 ~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 89 KGVKKIIKAAKKLLKEK 105 (276)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999998887643
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.55 E-value=5.7e-07 Score=87.54 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=45.1
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHHHHHH
Q 016883 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDL 350 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~ 350 (381)
..+.+++|+|++.+..... + .....+. -.+.-+|+||.|.....-.........+.|+..++ +|+++++|...
T Consensus 232 ~p~~~~LVl~a~~g~~~~~-~-a~~f~~~--~~~~giIlTKlD~t~~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~~ 304 (318)
T PRK10416 232 APHEVLLVLDATTGQNALS-Q-AKAFHEA--VGLTGIILTKLDGTAKGGVVFAIADELGIPIKFIG--VGEGIDDLQPF 304 (318)
T ss_pred CCceEEEEEECCCChHHHH-H-HHHHHhh--CCCCEEEEECCCCCCCccHHHHHHHHHCCCEEEEe--CCCChhhCccC
Confidence 4778899999985432222 2 2222221 24557889999965543222222345588999998 89999887543
No 361
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.55 E-value=2.7e-07 Score=80.27 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=58.6
Q ss_pred cEEEEEEeCCCCCChhHHHHH-HHHHHhCCCCeEEEEEeCccCCCcccchhH--HHhh-CCCceEEEecCCCCCHHHHHH
Q 016883 274 CVIIFLVDGQAGLTAADEEIA-DWLRKNYMDKFIILAVNKCESPRKGIMQVS--EFWS-LGFSPLPISAISGTGTGELLD 349 (381)
Q Consensus 274 d~ii~VvD~~~~~~~~~~~~~-~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~--~~~~-~~~~~~~vSA~~g~gi~~l~~ 349 (381)
|++++|+|+.++....+..+. ..+... ++|+++|+||+|+.+++..... .+.. ...+++++||++|.|+++|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~--~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEK--GKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcC--CCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 789999999887776665555 344433 8999999999999765432221 1222 244689999999999999999
Q ss_pred HHHHHh
Q 016883 350 LVCSEL 355 (381)
Q Consensus 350 ~i~~~l 355 (381)
.+.+.+
T Consensus 79 ~i~~~~ 84 (155)
T cd01849 79 AFTKQT 84 (155)
T ss_pred HHHHHh
Confidence 987654
No 362
>PRK14974 cell division protein FtsY; Provisional
Probab=98.53 E-value=4.7e-07 Score=88.58 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=46.2
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHHHHHH
Q 016883 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDL 350 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~ 350 (381)
..|.+++|+|+..+. ...+......+. -...-+++||.|.....-.........+.|+..++ +|++++++..+
T Consensus 252 ~pd~~iLVl~a~~g~--d~~~~a~~f~~~--~~~~giIlTKlD~~~~~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 252 KPDLVIFVGDALAGN--DAVEQAREFNEA--VGIDGVILTKVDADAKGGAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred CCceEEEeeccccch--hHHHHHHHHHhc--CCCCEEEEeeecCCCCccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 578999999987532 212223333222 23467889999987643322222344688999988 89999887654
No 363
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.52 E-value=1.3e-06 Score=83.26 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=45.9
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHHHHHH
Q 016883 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDL 350 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~ 350 (381)
.+|.+++|+|+..+ ..+........+. -...-+|+||.|.....-.........+.|+..++ +|++++++..+
T Consensus 190 ~~~~~~LVl~a~~~--~~~~~~~~~f~~~--~~~~g~IlTKlDe~~~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 190 APDEVLLVLDATTG--QNALEQAKVFNEA--VGLTGIILTKLDGTAKGGIILSIAYELKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred CCceEEEEEECCCC--HHHHHHHHHHHhh--CCCCEEEEEccCCCCCccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence 38999999999743 3333333333332 23567889999986543322222234578998888 88988876543
No 364
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=2.4e-07 Score=88.46 Aligned_cols=156 Identities=19% Similarity=0.160 Sum_probs=100.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCC----------cccc-----cCCCCcccccceeeEEeCCceEEEEEcCCCCCcc
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGN----------RAIV-----VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~----------~~~~-----~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~ 225 (381)
....+|+-+|+...|||||..+++.-. +..+ ....|.|....+..+......+-=+|+||+.++-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 345689999999999999988876421 1111 1223566655554555556667789999997632
Q ss_pred CCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe
Q 016883 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p 305 (381)
+ ..+.-..+-|+.|+|+.+.++...+.++.+-..++- +++
T Consensus 132 K--------------------------------------NMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQV--GV~ 171 (449)
T KOG0460|consen 132 K--------------------------------------NMITGAAQMDGAILVVAATDGPMPQTREHLLLARQV--GVK 171 (449)
T ss_pred H--------------------------------------HhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHc--CCc
Confidence 2 122233567999999999999999999988877775 544
Q ss_pred -EEEEEeCccCCCc-ccchhHH-----------HhhCCCceEEEec---CCCC----C---HHHHHHHHHHHhh
Q 016883 306 -IILAVNKCESPRK-GIMQVSE-----------FWSLGFSPLPISA---ISGT----G---TGELLDLVCSELK 356 (381)
Q Consensus 306 -~ivV~NK~Dl~~~-~~~~~~~-----------~~~~~~~~~~vSA---~~g~----g---i~~l~~~i~~~l~ 356 (381)
+++.+||+|+.++ +.++..+ +...+.|++.=|| +.|. | |.+|++.+.++++
T Consensus 172 ~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip 245 (449)
T KOG0460|consen 172 HIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP 245 (449)
T ss_pred eEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence 5666999999954 3332211 1123458876555 4453 2 4555555555554
No 365
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.49 E-value=5.9e-07 Score=84.31 Aligned_cols=86 Identities=13% Similarity=0.161 Sum_probs=62.4
Q ss_pred HHhccccEEEEEEeCCCCC-ChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcccch--h-HHHhhCCCceEEEecCCCC
Q 016883 268 AAIEESCVIIFLVDGQAGL-TAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIMQ--V-SEFWSLGFSPLPISAISGT 342 (381)
Q Consensus 268 ~~l~~~d~ii~VvD~~~~~-~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~--~-~~~~~~~~~~~~vSA~~g~ 342 (381)
.++.++|.+++|+|+.++. +... ..|+..+... ++|+++|+||+|+.+..... . ..+...+.+++.+||++|+
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~--~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~ 109 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQ--NIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQD 109 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCch
Confidence 3568999999999998755 3333 3344444443 89999999999997543321 1 1223467789999999999
Q ss_pred CHHHHHHHHHHHh
Q 016883 343 GTGELLDLVCSEL 355 (381)
Q Consensus 343 gi~~l~~~i~~~l 355 (381)
|++++++.+.+.+
T Consensus 110 gi~eLf~~l~~~~ 122 (245)
T TIGR00157 110 GLKELIEALQNRI 122 (245)
T ss_pred hHHHHHhhhcCCE
Confidence 9999999887643
No 366
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.8e-07 Score=95.07 Aligned_cols=123 Identities=15% Similarity=0.208 Sum_probs=93.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCC--cccc---------------cCCCCcccccceeeEEeCCceEEEEEcCCCCCc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGN--RAIV---------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~--~~~~---------------~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~ 224 (381)
....|+++-+-.+||||+.++++... .... ....+.|.......+.|.+..+.++||||+.++
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 35588999999999999999876431 0011 111244555555556778889999999999987
Q ss_pred cCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCC
Q 016883 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (381)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (381)
.-.- .+.+...|..|+|+|+..+...+...+.+.++++ ++
T Consensus 118 T~EV--------------------------------------eRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry--~v 157 (721)
T KOG0465|consen 118 TFEV--------------------------------------ERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY--NV 157 (721)
T ss_pred EEEe--------------------------------------hhhhhhccCeEEEEEcccceehhhHHHHHHHHhc--CC
Confidence 6532 2556778999999999999999999999999998 99
Q ss_pred eEEEEEeCccCCCcccchhH
Q 016883 305 FIILAVNKCESPRKGIMQVS 324 (381)
Q Consensus 305 p~ivV~NK~Dl~~~~~~~~~ 324 (381)
|.+..+||+|..........
T Consensus 158 P~i~FiNKmDRmGa~~~~~l 177 (721)
T KOG0465|consen 158 PRICFINKMDRMGASPFRTL 177 (721)
T ss_pred CeEEEEehhhhcCCChHHHH
Confidence 99999999999876544333
No 367
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.44 E-value=1.2e-06 Score=74.80 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=99.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
-..+|.++|.+..|||||+-...+...-+ ..............+...+. .+.+||..|.+++..+-.
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de-~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lP---------- 87 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDE-EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLP---------- 87 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHH-HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCc----------
Confidence 35699999999999999999888875321 11111112222222333343 457999999976433211
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCC-CCeEEEEEeCccCC-
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYM-DKFIILAVNKCESP- 316 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~-~~p~ivV~NK~Dl~- 316 (381)
-....+-+|+|++|.+.+.+... .+|++..+.... -+| |+|++|-|+.
T Consensus 88 ----------------------------iac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi 138 (205)
T KOG1673|consen 88 ----------------------------IACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFI 138 (205)
T ss_pred ----------------------------eeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhh
Confidence 12245778999999998766555 678877776532 344 5679999963
Q ss_pred --CcccchhH-----H-HhhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 317 --RKGIMQVS-----E-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 317 --~~~~~~~~-----~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
+.+..+.. . ....+.+.|++|+....|+.++|+.+...+
T Consensus 139 ~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 139 DLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHHHHHHHH
Confidence 22222111 1 123577899999999999999999876654
No 368
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.41 E-value=3.5e-08 Score=86.64 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=101.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCC-cccccceeeEEeCCc---eEEEEEcCCCCCccCCCchhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPG-VTRDRMYGRSFWGEH---EFMLVDTGGVLNVSKSQPNIMEDLAI 237 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~-tt~~~~~~~~~~~~~---~~~liDTPG~~~~~~~~~~~~~~~~~ 237 (381)
...++.++|.-|+||++++.+.....+. ..+.. ...+.....+.+++. ++++||..|++.+..+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs--~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~m---------- 91 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFS--YHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNM---------- 91 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHH--HHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcce----------
Confidence 3568899999999999999988765421 11111 112222223344443 3579999999865432
Q ss_pred hhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--C---CCCeEEEEEe
Q 016883 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--Y---MDKFIILAVN 311 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~---~~~p~ivV~N 311 (381)
+.-+++.+++.++|+|.+.+.+... ..|...+-.. + .-.|+++..|
T Consensus 92 ----------------------------trVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllan 143 (229)
T KOG4423|consen 92 ----------------------------TRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLAN 143 (229)
T ss_pred ----------------------------EEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccc
Confidence 2246688999999999998776654 2233322221 1 3577899999
Q ss_pred CccCCCcccch----hHHHh-hCCC-ceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 312 KCESPRKGIMQ----VSEFW-SLGF-SPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 312 K~Dl~~~~~~~----~~~~~-~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
|||.......+ ..++. ..++ ..+++|+|...++++....+.+.+.
T Consensus 144 kCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 144 KCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKIL 194 (229)
T ss_pred hhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHH
Confidence 99987643332 11222 2233 5799999999999999998887654
No 369
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.39 E-value=1.4e-06 Score=83.75 Aligned_cols=91 Identities=22% Similarity=0.304 Sum_probs=68.5
Q ss_pred HHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh-HHH-hhCCCceEEEecCCC
Q 016883 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV-SEF-WSLGFSPLPISAISG 341 (381)
Q Consensus 264 ~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~-~~~-~~~~~~~~~vSA~~g 341 (381)
++....+..+|++++|+|+..+.+..+.++...+. ++|+++|+||+|+.+....+. ..+ ...+.+++.+||+++
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~ 91 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKG 91 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 35667788999999999999887777655555442 789999999999975432221 121 233567899999999
Q ss_pred CCHHHHHHHHHHHhhhc
Q 016883 342 TGTGELLDLVCSELKKV 358 (381)
Q Consensus 342 ~gi~~l~~~i~~~l~~~ 358 (381)
.|+++|++.+.+.++..
T Consensus 92 ~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 92 QGVKKILKAAKKLLKEK 108 (287)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999998887643
No 370
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=4.7e-07 Score=85.37 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=55.6
Q ss_pred ccEEEEEEeCCC----CCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh-----HHHh----hCCCceEEEecC
Q 016883 273 SCVIIFLVDGQA----GLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV-----SEFW----SLGFSPLPISAI 339 (381)
Q Consensus 273 ~d~ii~VvD~~~----~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~-----~~~~----~~~~~~~~vSA~ 339 (381)
-|..++++.++. +.+.+....++.++ -+.++++-||+|+..+..... ..+. ..+.|++++||.
T Consensus 149 mDaalLlIA~NEsCPQPQTsEHLaaveiM~----LkhiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQ 224 (466)
T KOG0466|consen 149 MDAALLLIAGNESCPQPQTSEHLAAVEIMK----LKHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQ 224 (466)
T ss_pred hhhhhhhhhcCCCCCCCchhhHHHHHHHhh----hceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhh
Confidence 467777777665 23333333344443 478899999999987543221 1221 246699999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 016883 340 SGTGTGELLDLVCSELK 356 (381)
Q Consensus 340 ~g~gi~~l~~~i~~~l~ 356 (381)
-+.||+-+.++|.+.++
T Consensus 225 lkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 225 LKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hccChHHHHHHHHhcCC
Confidence 99999999999999876
No 371
>PRK12289 GTPase RsgA; Reviewed
Probab=98.30 E-value=2.4e-06 Score=84.15 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=60.8
Q ss_pred HhccccEEEEEEeCCCCC-ChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH--HHhhCCCceEEEecCCCCCH
Q 016883 269 AIEESCVIIFLVDGQAGL-TAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS--EFWSLGFSPLPISAISGTGT 344 (381)
Q Consensus 269 ~l~~~d~ii~VvD~~~~~-~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~--~~~~~~~~~~~vSA~~g~gi 344 (381)
.+.++|.+++|+|+.++. .... ..++..+... ++|+++|+||+|+.+....+.. .+...+++++++||++|.|+
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~--~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI 163 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAEST--GLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGL 163 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCH
Confidence 467999999999998643 3221 2333333333 8999999999999865332221 22346778999999999999
Q ss_pred HHHHHHHHHHh
Q 016883 345 GELLDLVCSEL 355 (381)
Q Consensus 345 ~~l~~~i~~~l 355 (381)
++|++.+...+
T Consensus 164 ~eL~~~L~~ki 174 (352)
T PRK12289 164 EALLEQLRNKI 174 (352)
T ss_pred HHHhhhhccce
Confidence 99999987654
No 372
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.24 E-value=3.7e-06 Score=80.80 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=60.7
Q ss_pred HhccccEEEEEEeCCCCC-ChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcccchh--HHHhhCCCceEEEecCCCCCH
Q 016883 269 AIEESCVIIFLVDGQAGL-TAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIMQV--SEFWSLGFSPLPISAISGTGT 344 (381)
Q Consensus 269 ~l~~~d~ii~VvD~~~~~-~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~--~~~~~~~~~~~~vSA~~g~gi 344 (381)
.+.++|.+++|+|+.++. +... ..++..+... ++|.++|+||+|+.++..... ......+.+++++||++|.|+
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence 357899999999998876 3322 2345445544 899999999999976532111 112345779999999999999
Q ss_pred HHHHHHHHH
Q 016883 345 GELLDLVCS 353 (381)
Q Consensus 345 ~~l~~~i~~ 353 (381)
++|+.++..
T Consensus 153 ~~L~~~L~~ 161 (287)
T cd01854 153 DELREYLKG 161 (287)
T ss_pred HHHHhhhcc
Confidence 999998875
No 373
>PRK00098 GTPase RsgA; Reviewed
Probab=98.23 E-value=4.1e-06 Score=80.95 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=59.2
Q ss_pred HhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCccc-ch-hHH-HhhCCCceEEEecCCCCC
Q 016883 269 AIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKGI-MQ-VSE-FWSLGFSPLPISAISGTG 343 (381)
Q Consensus 269 ~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~-~~-~~~-~~~~~~~~~~vSA~~g~g 343 (381)
.+.++|++++|+|+.++..... ..++..+... ++|.++|+||+|+..... .. ... +...+.+++++||++|+|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 3578999999999976543222 3444445544 899999999999963321 11 112 234577999999999999
Q ss_pred HHHHHHHHHH
Q 016883 344 TGELLDLVCS 353 (381)
Q Consensus 344 i~~l~~~i~~ 353 (381)
+++|++.+..
T Consensus 155 i~~L~~~l~g 164 (298)
T PRK00098 155 LDELKPLLAG 164 (298)
T ss_pred HHHHHhhccC
Confidence 9999998754
No 374
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.16 E-value=9.7e-06 Score=79.02 Aligned_cols=74 Identities=23% Similarity=0.203 Sum_probs=48.8
Q ss_pred EEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC
Q 016883 206 SFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG 285 (381)
Q Consensus 206 ~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~ 285 (381)
+.+++..+.+||++|....+. .+..++..+++|+||+|.++-
T Consensus 156 f~~~~~~~~~~DvgGq~~~R~--------------------------------------kW~~~f~~v~~iifvv~lsd~ 197 (317)
T cd00066 156 FTIKNLKFRMFDVGGQRSERK--------------------------------------KWIHCFEDVTAIIFVVALSEY 197 (317)
T ss_pred EEecceEEEEECCCCCcccch--------------------------------------hHHHHhCCCCEEEEEEEchhc
Confidence 344556678999999865333 445677899999999998762
Q ss_pred C--------Ch---hHHHHHHHHHH--hCCCCeEEEEEeCccCCC
Q 016883 286 L--------TA---ADEEIADWLRK--NYMDKFIILAVNKCESPR 317 (381)
Q Consensus 286 ~--------~~---~~~~~~~~l~~--~~~~~p~ivV~NK~Dl~~ 317 (381)
- .. .....++.+.. .+.++|+++++||.|+..
T Consensus 198 d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 198 DQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFE 242 (317)
T ss_pred ccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHH
Confidence 1 11 11223333332 236899999999999754
No 375
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=5e-06 Score=77.61 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCccc---ccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI---VVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLA 236 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~---~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 236 (381)
..++|+-+|.+|.|||||++.|....... ....|..........+.-.+ -+++++||.|+++.-....
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~------- 113 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKED------- 113 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccc-------
Confidence 36789999999999999999999875311 11112111112222221122 2578999999987432111
Q ss_pred hhhccCCCCCchhhHHHHHhcchhHHHHH-----HHHHh--ccccEEEEEEeCCC-CCChhHHHHHHHHHHhCCCCeEEE
Q 016883 237 ITTTIGMEGIPLATREAAVARMPSMIERQ-----ATAAI--EESCVIIFLVDGQA-GLTAADEEIADWLRKNYMDKFIIL 308 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l--~~~d~ii~VvD~~~-~~~~~~~~~~~~l~~~~~~~p~iv 308 (381)
.| -.-++..-..+..|+.+. ++..+ .+.|+++|.|.++. ++...|.-.++.+.. .+.+|-
T Consensus 114 -----Sy----k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds---kVNIIP 181 (406)
T KOG3859|consen 114 -----SY----KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS---KVNIIP 181 (406)
T ss_pred -----cc----chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh---hhhhHH
Confidence 00 011222222333333221 11112 35889999998764 677777666666655 677888
Q ss_pred EEeCccCCCccc
Q 016883 309 AVNKCESPRKGI 320 (381)
Q Consensus 309 V~NK~Dl~~~~~ 320 (381)
|+-|.|...+..
T Consensus 182 vIAKaDtisK~e 193 (406)
T KOG3859|consen 182 VIAKADTISKEE 193 (406)
T ss_pred HHHHhhhhhHHH
Confidence 899999876543
No 376
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.13 E-value=2.1e-05 Score=79.64 Aligned_cols=91 Identities=14% Similarity=0.200 Sum_probs=50.9
Q ss_pred ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH
Q 016883 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (381)
Q Consensus 211 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~ 290 (381)
..+.|+||||.... ....++++ .....+..+|.+++|+|+..+ .
T Consensus 176 ~DvVIIDTAGr~~~---d~~lm~El-----------------------------~~l~~~~~pdevlLVvda~~g--q-- 219 (437)
T PRK00771 176 ADVIIVDTAGRHAL---EEDLIEEM-----------------------------KEIKEAVKPDEVLLVIDATIG--Q-- 219 (437)
T ss_pred CCEEEEECCCcccc---hHHHHHHH-----------------------------HHHHHHhcccceeEEEecccc--H--
Confidence 36899999997532 33344443 222334568999999998764 1
Q ss_pred HHHHHHHHHhCCCC-eEEEEEeCccCCCcccchhHHHhhCCCceEEEec
Q 016883 291 EEIADWLRKNYMDK-FIILAVNKCESPRKGIMQVSEFWSLGFSPLPISA 338 (381)
Q Consensus 291 ~~~~~~l~~~~~~~-p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA 338 (381)
+.+...+...... ..-+|+||.|.....-....-....+.|+.+++.
T Consensus 220 -~av~~a~~F~~~l~i~gvIlTKlD~~a~~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 220 -QAKNQAKAFHEAVGIGGIIITKLDGTAKGGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred -HHHHHHHHHHhcCCCCEEEEecccCCCcccHHHHHHHHHCcCEEEEec
Confidence 2233333321122 3467899999755332222222344666666654
No 377
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=7.6e-06 Score=82.76 Aligned_cols=131 Identities=19% Similarity=0.249 Sum_probs=86.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcc-cccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++.|+++|+||+||||||..|.....- ......|. . ..+.....+++|+.+|.-.
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP----i-TvvsgK~RRiTflEcp~Dl------------------ 124 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP----I-TVVSGKTRRITFLECPSDL------------------ 124 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc----e-EEeecceeEEEEEeChHHH------------------
Confidence 4567789999999999999999875311 11111111 0 0112234568999998321
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeE-EEEEeCccCCCcc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI-ILAVNKCESPRKG 319 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~-ivV~NK~Dl~~~~ 319 (381)
.+.....+-+|++++++|.+-++.-...+++..+... +.|- +-|++..|+....
T Consensus 125 -----------------------~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~H--GmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 125 -----------------------HQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISH--GMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred -----------------------HHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhc--CCCceEEEEeecccccCh
Confidence 1344556779999999999999999999999998887 7775 4589999997642
Q ss_pred -cchhH------HHhh---CCCceEEEecCC
Q 016883 320 -IMQVS------EFWS---LGFSPLPISAIS 340 (381)
Q Consensus 320 -~~~~~------~~~~---~~~~~~~vSA~~ 340 (381)
.+... .+|. .+...|.+|-..
T Consensus 180 stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 180 STLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred HHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 22211 1222 355677777643
No 378
>PRK12288 GTPase RsgA; Reviewed
Probab=98.10 E-value=1.6e-05 Score=78.37 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=60.1
Q ss_pred hccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcccch----hHH-HhhCCCceEEEecCCCCC
Q 016883 270 IEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIMQ----VSE-FWSLGFSPLPISAISGTG 343 (381)
Q Consensus 270 l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~----~~~-~~~~~~~~~~vSA~~g~g 343 (381)
..++|.+++|++....+.... ..++..+... ++|.++|+||+|+.+..... ... +...+.+++++||++|+|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~--~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETL--GIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 468999999999775544433 2233334333 79999999999998643211 111 234678999999999999
Q ss_pred HHHHHHHHHHHhh
Q 016883 344 TGELLDLVCSELK 356 (381)
Q Consensus 344 i~~l~~~i~~~l~ 356 (381)
+++|+++|...+.
T Consensus 196 ideL~~~L~~ki~ 208 (347)
T PRK12288 196 LEELEAALTGRIS 208 (347)
T ss_pred HHHHHHHHhhCCE
Confidence 9999999987543
No 379
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.09 E-value=5.7e-06 Score=75.05 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=37.4
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHH
Q 016883 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGE 346 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~ 346 (381)
..+-+++|++++.+....+ .+.... +. -.+-=+++||.|....--....-....+.|+-.+| +|+++++
T Consensus 113 ~~~~~~LVlsa~~~~~~~~-~~~~~~-~~--~~~~~lIlTKlDet~~~G~~l~~~~~~~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 113 NPDEVHLVLSATMGQEDLE-QALAFY-EA--FGIDGLILTKLDETARLGALLSLAYESGLPISYIT--TGQRVDD 181 (196)
T ss_dssp SSSEEEEEEEGGGGGHHHH-HHHHHH-HH--SSTCEEEEESTTSSSTTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred CCccceEEEecccChHHHH-HHHHHh-hc--ccCceEEEEeecCCCCcccceeHHHHhCCCeEEEE--CCCChhc
Confidence 5778899999885432222 233332 22 12335669999986543222222234566766665 4555544
No 380
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.07 E-value=2.2e-05 Score=56.19 Aligned_cols=52 Identities=23% Similarity=0.407 Sum_probs=35.9
Q ss_pred HHHHHHHhcc-ccEEEEEEeCCC--CCChhH-HHHHHHHHHhCCCCeEEEEEeCcc
Q 016883 263 ERQATAAIEE-SCVIIFLVDGQA--GLTAAD-EEIADWLRKNYMDKFIILAVNKCE 314 (381)
Q Consensus 263 ~~~~~~~l~~-~d~ii~VvD~~~--~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~D 314 (381)
+.++..++.. .++|+|++|.+. |.+..+ ..+++.++..+.++|+++|+||+|
T Consensus 3 E~qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 3 EMQAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hHHHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4456666655 789999999987 565554 668899999988999999999998
No 381
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.05 E-value=2.2e-05 Score=77.34 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=35.3
Q ss_pred HHHHHhccccEEEEEEeCCCCC--------Ch---hHHHHHHHHHH--hCCCCeEEEEEeCccCCC
Q 016883 265 QATAAIEESCVIIFLVDGQAGL--------TA---ADEEIADWLRK--NYMDKFIILAVNKCESPR 317 (381)
Q Consensus 265 ~~~~~l~~~d~ii~VvD~~~~~--------~~---~~~~~~~~l~~--~~~~~p~ivV~NK~Dl~~ 317 (381)
.+..++..+++|+||+|.++-- .. ....+++.+.. .+.+.|+++++||.|+..
T Consensus 200 kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 200 KWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFE 265 (342)
T ss_pred hHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHH
Confidence 4456778999999999988521 11 11223333333 246899999999999753
No 382
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.05 E-value=8.9e-06 Score=71.17 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|+.|+|||||++.+...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999998865
No 383
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.00 E-value=3.7e-05 Score=76.28 Aligned_cols=86 Identities=22% Similarity=0.226 Sum_probs=59.4
Q ss_pred HHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccc-hh-HH-----HhhCCC---ceE
Q 016883 265 QATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QV-SE-----FWSLGF---SPL 334 (381)
Q Consensus 265 ~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~-~~-~~-----~~~~~~---~~~ 334 (381)
....+...++++++|+|+.+.......++.+. ..++|+++|+||+|+.+.... +. .. ....++ .++
T Consensus 56 ~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~----~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~ 131 (360)
T TIGR03597 56 LLNSLGDSNALIVYVVDIFDFEGSLIPELKRF----VGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDII 131 (360)
T ss_pred HHhhcccCCcEEEEEEECcCCCCCccHHHHHH----hCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEE
Confidence 33445578899999999876544433333333 337899999999999764321 11 11 123444 489
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q 016883 335 PISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 335 ~vSA~~g~gi~~l~~~i~~~ 354 (381)
.+||++|.|++++++.|.+.
T Consensus 132 ~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 132 LVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred EecCCCCCCHHHHHHHHHHH
Confidence 99999999999999999765
No 384
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=0.0001 Score=73.02 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...++|+|++||||||++..|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999988753
No 385
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=4.8e-05 Score=75.49 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...|+++|++|+||||++..|..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999999864
No 386
>PRK01889 GTPase RsgA; Reviewed
Probab=97.95 E-value=3.9e-05 Score=75.94 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=58.9
Q ss_pred hccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCccc--chhHHHhhCCCceEEEecCCCCCHHH
Q 016883 270 IEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEFWSLGFSPLPISAISGTGTGE 346 (381)
Q Consensus 270 l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~~~~~~~~~~vSA~~g~gi~~ 346 (381)
..++|.+++|+++..++.... ..++..+... +++.++|+||+|+.++.. .+.......+.+++.+|+++|.|+++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~ 187 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLDV 187 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHHH
Confidence 478999999999976555533 3344445544 788899999999986521 11122224567999999999999999
Q ss_pred HHHHHH
Q 016883 347 LLDLVC 352 (381)
Q Consensus 347 l~~~i~ 352 (381)
|..++.
T Consensus 188 L~~~L~ 193 (356)
T PRK01889 188 LAAWLS 193 (356)
T ss_pred HHHHhh
Confidence 999885
No 387
>PRK10867 signal recognition particle protein; Provisional
Probab=97.94 E-value=8.5e-05 Score=75.14 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~ 184 (381)
.+..++++|.+|+||||++-.|.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 35688999999999999766554
No 388
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.91 E-value=0.00011 Score=74.42 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=79.3
Q ss_pred CCCCCEEEEEcCCCCChhHHHHHHhCCCcc---------------cccCC------------------------------
Q 016883 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRA---------------IVVDE------------------------------ 194 (381)
Q Consensus 160 ~~~~~~v~l~G~~gvGKSSLin~L~~~~~~---------------~~~~~------------------------------ 194 (381)
.++.++|+++|...+||||.+..+...... ..+..
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 456889999999999999999987654210 00000
Q ss_pred --------CCcccccceeeEEeCCc---eEEEEEcCCCCCccCCC--chhhhhhhhhhccCCCCCchhhHHHHHhcchhH
Q 016883 195 --------PGVTRDRMYGRSFWGEH---EFMLVDTGGVLNVSKSQ--PNIMEDLAITTTIGMEGIPLATREAAVARMPSM 261 (381)
Q Consensus 195 --------~~tt~~~~~~~~~~~~~---~~~liDTPG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (381)
.|+|.......+.+.|. +++++|.||+...-... .+. ..-
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dT---------------------------Kd~ 437 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDT---------------------------KET 437 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccc---------------------------hHH
Confidence 12333333334444443 57899999998653211 111 111
Q ss_pred HHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHh-CCCCeEEEEEeCccCCCccc
Q 016883 262 IERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN-YMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 262 ~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~~~ 320 (381)
+-+.+..++.+.+.||+|+.-. ........+-+.+... -.++..|+|++|+|+..++.
T Consensus 438 I~~msKayM~NPNAIILCIQDG-SVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknl 496 (980)
T KOG0447|consen 438 IFSISKAYMQNPNAIILCIQDG-SVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNV 496 (980)
T ss_pred HHHHHHHHhcCCCeEEEEeccC-CcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhcc
Confidence 2345667889999999998432 1112212222333321 13788999999999987643
No 389
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=8.1e-05 Score=73.60 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhC
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
+...++++|++|+||||++..|..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 355789999999999999988764
No 390
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=2e-05 Score=78.81 Aligned_cols=113 Identities=21% Similarity=0.282 Sum_probs=76.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCC---------------CcccccceeeEEe----------------CCc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP---------------GVTRDRMYGRSFW----------------GEH 211 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~---------------~tt~~~~~~~~~~----------------~~~ 211 (381)
..++-++.+...|||||...|....-...+... +.|...+...+.+ ++.
T Consensus 19 iRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~F 98 (842)
T KOG0469|consen 19 IRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGF 98 (842)
T ss_pred cccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcce
Confidence 446678899999999999999865321111111 1222111111110 123
Q ss_pred eEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH
Q 016883 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (381)
Q Consensus 212 ~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~ 291 (381)
-+.++|.||+.++.. ....+++-.|..++|+|.-++..-+..
T Consensus 99 LiNLIDSPGHVDFSS--------------------------------------EVTAALRVTDGALVVVDcv~GvCVQTE 140 (842)
T KOG0469|consen 99 LINLIDSPGHVDFSS--------------------------------------EVTAALRVTDGALVVVDCVSGVCVQTE 140 (842)
T ss_pred eEEeccCCCcccchh--------------------------------------hhhheeEeccCcEEEEEccCceEechH
Confidence 478999999998765 334567889999999999999988888
Q ss_pred HHHHHHHHhCCCCeEEEEEeCccC
Q 016883 292 EIADWLRKNYMDKFIILAVNKCES 315 (381)
Q Consensus 292 ~~~~~l~~~~~~~p~ivV~NK~Dl 315 (381)
.+++..... .+.-++|+||+|.
T Consensus 141 TVLrQA~~E--RIkPvlv~NK~DR 162 (842)
T KOG0469|consen 141 TVLRQAIAE--RIKPVLVMNKMDR 162 (842)
T ss_pred HHHHHHHHh--hccceEEeehhhH
Confidence 888776654 5555678999995
No 391
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00017 Score=77.27 Aligned_cols=73 Identities=10% Similarity=0.058 Sum_probs=39.2
Q ss_pred ccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCH-HHH
Q 016883 271 EESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGT-GEL 347 (381)
Q Consensus 271 ~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi-~~l 347 (381)
...+-+++|+|++.. ..+ .++++.......-.+.=+|+||.|.....-.-..-....+.|+..++ +|++| +++
T Consensus 292 ~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL 366 (767)
T PRK14723 292 GRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVIRHRLPVHYVS--TGQKVPEHL 366 (767)
T ss_pred CCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHHHHCCCeEEEe--cCCCChhhc
Confidence 346678899998732 222 22333333211012456789999986542222222234567777765 57777 444
No 392
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.88 E-value=1.8e-05 Score=64.97 Aligned_cols=70 Identities=13% Similarity=-0.046 Sum_probs=42.0
Q ss_pred ccccEEEEEEeCCCCCChhHHHHHHHHHHh-CCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHH
Q 016883 271 EESCVIIFLVDGQAGLTAADEEIADWLRKN-YMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTG 345 (381)
Q Consensus 271 ~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~ 345 (381)
+.++.++.|++.....+.... +...+... ..+.|.+++.||.|+........ ....+++.+|+++|.|+.
T Consensus 45 ~s~~~~~~v~~~~~~~s~~~~-~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~----~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 45 ESFDVVLQCWRVDDRDSADNK-NVPEVLVGNKSDLPILVGGNRDVLEEERQVAT----EEGLEFAETSAKTPEEGE 115 (124)
T ss_pred CCCCEEEEEEEccCHHHHHHH-hHHHHHhcCCCCCcEEEEeechhhHhhCcCCH----HHHHHHHHHhCCCcchhh
Confidence 567888887877654333222 33333332 23578899999999844321111 112356788999999984
No 393
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.85 E-value=3.4e-05 Score=66.81 Aligned_cols=21 Identities=38% Similarity=0.730 Sum_probs=18.1
Q ss_pred EEEEcCCCCChhHHHHHHhCC
Q 016883 166 VAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~ 186 (381)
++++|.+|+||||++..+...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 689999999999999887643
No 394
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.85 E-value=0.00013 Score=73.65 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=37.1
Q ss_pred ccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHH
Q 016883 271 EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGE 346 (381)
Q Consensus 271 ~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~ 346 (381)
-..|-+++|+|+..+ ....+....+.+.. ...=+|+||.|-....-.........+.|+..++. |+.+++
T Consensus 211 ~~p~e~lLVvda~tg--q~~~~~a~~f~~~v--~i~giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~--Ge~i~d 280 (428)
T TIGR00959 211 LNPDEILLVVDAMTG--QDAVNTAKTFNERL--GLTGVVLTKLDGDARGGAALSVRSVTGKPIKFIGV--GEKIDD 280 (428)
T ss_pred hCCceEEEEEeccch--HHHHHHHHHHHhhC--CCCEEEEeCccCcccccHHHHHHHHHCcCEEEEeC--CCChhh
Confidence 357888999998632 22233444443321 23466799999644322222222345667766554 444443
No 395
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.84 E-value=0.00028 Score=67.53 Aligned_cols=54 Identities=11% Similarity=0.194 Sum_probs=39.2
Q ss_pred CCCeEEEEEeCccCCC----c-ccch----hHH-----H-hhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 302 MDKFIILAVNKCESPR----K-GIMQ----VSE-----F-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 302 ~~~p~ivV~NK~Dl~~----~-~~~~----~~~-----~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
.++|+++|++|||... + +... .+. + ..++...|.+|+|...|++-|..+|.+..
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 3677999999999843 1 1111 111 1 24567889999999999999999998864
No 396
>PRK13796 GTPase YqeH; Provisional
Probab=97.83 E-value=0.00011 Score=72.94 Aligned_cols=86 Identities=22% Similarity=0.159 Sum_probs=58.0
Q ss_pred HHHHhcccc-EEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccc-hhHH------HhhCCC---ceE
Q 016883 266 ATAAIEESC-VIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSE------FWSLGF---SPL 334 (381)
Q Consensus 266 ~~~~l~~~d-~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~-~~~~------~~~~~~---~~~ 334 (381)
.+..+...+ +|++|+|+.+..... ...+.+...++|+++|+||+|+.+.... +... ....+. .++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s~----~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGSW----IPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCch----hHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 445556656 999999988643332 3333333337899999999999764321 1111 122343 589
Q ss_pred EEecCCCCCHHHHHHHHHHHh
Q 016883 335 PISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 335 ~vSA~~g~gi~~l~~~i~~~l 355 (381)
.+||++|.|++++++.|.+..
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 999999999999999998764
No 397
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.82 E-value=0.0004 Score=71.05 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=88.3
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccc-eeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhh
Q 016883 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRM-YGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDL 235 (381)
Q Consensus 159 ~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~-~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~ 235 (381)
..+..+.+.++|+.++|||.+++.++|+.... ++. +++.... ...+...| ..+.+-|.+-. ...-...
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~-~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~------ 491 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNT-GTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTS------ 491 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhcccccc-ccc-cCCCCceeeeeeeeccccceEEEeecCcc-ccccccC------
Confidence 34567899999999999999999999986544 222 2221111 11111112 12334443321 1000000
Q ss_pred hhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH-HHHHHHHHhCCCCeEEEEEeCcc
Q 016883 236 AITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCE 314 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivV~NK~D 314 (381)
.. ..||++++++|.+++-...-. .+...... ....|+++|.+|+|
T Consensus 492 --------------------------------ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~-~~~~Pc~~va~K~d 537 (625)
T KOG1707|consen 492 --------------------------------KE-AACDVACLVYDSSNPRSFEYLAEVYNKYFD-LYKIPCLMVATKAD 537 (625)
T ss_pred --------------------------------cc-ceeeeEEEecccCCchHHHHHHHHHHHhhh-ccCCceEEEeeccc
Confidence 11 579999999999965544432 22222222 25899999999999
Q ss_pred CCCccc----chhHHHhhCCC-ceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 315 SPRKGI----MQVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 315 l~~~~~----~~~~~~~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
+....+ ....-....++ +.+.+|.++... .+++..|.....
T Consensus 538 lDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707|consen 538 LDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKLATMAQ 583 (625)
T ss_pred cchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHHHHhhh
Confidence 976431 12111234455 568888885323 778888777544
No 398
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=9.2e-05 Score=74.52 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..+++++|++|+||||++..|.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999987653
No 399
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=4.5e-05 Score=74.73 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=93.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCC------------------------------cccccCCCCcccccceeeEEeCC
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGN------------------------------RAIVVDEPGVTRDRMYGRSFWGE 210 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~------------------------------~~~~~~~~~tt~~~~~~~~~~~~ 210 (381)
....+++|+|+..+||||+-..+.... ...-....+.|.......+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 446689999999999999866554321 00011112455556666666677
Q ss_pred ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC----
Q 016883 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL---- 286 (381)
Q Consensus 211 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~---- 286 (381)
..+.+.|+||+..+-. ....-..+||+-++|+.+..+.
T Consensus 157 ~~ftiLDApGHk~fv~--------------------------------------nmI~GasqAD~~vLvisar~gefetg 198 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVP--------------------------------------NMIGGASQADLAVLVISARKGEFETG 198 (501)
T ss_pred eeEEeeccCcccccch--------------------------------------hhccccchhhhhhhhhhhhhchhhcc
Confidence 8899999999975432 1223346789999999875421
Q ss_pred ---ChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc-----ch---hH-HH-h--h----CCCceEEEecCCCCCHHHH
Q 016883 287 ---TAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-----MQ---VS-EF-W--S----LGFSPLPISAISGTGTGEL 347 (381)
Q Consensus 287 ---~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~-----~~---~~-~~-~--~----~~~~~~~vSA~~g~gi~~l 347 (381)
..+.++.....+. ..-...|+++||+|....+- .+ .. .+ . . ....++++|..+|.++.+.
T Consensus 199 FerGgQTREha~Lakt-~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~ 277 (501)
T KOG0459|consen 199 FEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDR 277 (501)
T ss_pred cccccchhHHHHHHHh-hccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhc
Confidence 1133443333332 23677899999999765321 01 11 11 1 1 1235799999999999986
Q ss_pred HH
Q 016883 348 LD 349 (381)
Q Consensus 348 ~~ 349 (381)
..
T Consensus 278 ~~ 279 (501)
T KOG0459|consen 278 TD 279 (501)
T ss_pred cc
Confidence 65
No 400
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00043 Score=71.20 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...++|+|++|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999988764
No 401
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.73 E-value=0.00017 Score=63.67 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=33.2
Q ss_pred ccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceE
Q 016883 271 EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPL 334 (381)
Q Consensus 271 ~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~ 334 (381)
...+.+++|+|+..+. ...+....+.+.. + ..-+|+||+|..........-....+.|+.
T Consensus 111 ~~~~~~~lVv~~~~~~--~~~~~~~~~~~~~-~-~~~viltk~D~~~~~g~~~~~~~~~~~p~~ 170 (173)
T cd03115 111 VKPDEVLLVVDAMTGQ--DAVNQAKAFNEAL-G-ITGVILTKLDGDARGGAALSIRAVTGKPIK 170 (173)
T ss_pred cCCCeEEEEEECCCCh--HHHHHHHHHHhhC-C-CCEEEEECCcCCCCcchhhhhHHHHCcCeE
Confidence 3489999999986332 2233344443322 3 466788999987643322222234455543
No 402
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.73 E-value=0.00011 Score=83.20 Aligned_cols=128 Identities=23% Similarity=0.269 Sum_probs=68.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCccccc---CC----CCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVV---DE----PGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDL 235 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~---~~----~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~ 235 (381)
.+=.+++|++|+||||+|+.. |-...... .. .+.|+++.. +-....+++||+|..-........
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w----wf~~~avliDtaG~y~~~~~~~~~---- 181 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW----WFTDEAVLIDTAGRYTTQDSDPEE---- 181 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce----EecCCEEEEcCCCccccCCCcccc----
Confidence 345689999999999999976 33221111 11 112222221 113345799999976443211100
Q ss_pred hhhhccCCCCCchhhHHHHHhcchhHHHHHHHHH--hccccEEEEEEeCCCCCC--hhH-HHHH-------HHHHHh-CC
Q 016883 236 AITTTIGMEGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQAGLT--AAD-EEIA-------DWLRKN-YM 302 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~d~ii~VvD~~~~~~--~~~-~~~~-------~~l~~~-~~ 302 (381)
....|..++. ...++ -+..++||+++|+.+-+. ... .... ..+.+. ..
T Consensus 182 ------------------~~~~W~~fL~-~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~ 242 (1169)
T TIGR03348 182 ------------------DAAAWLGFLG-LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA 242 (1169)
T ss_pred ------------------cHHHHHHHHH-HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0011222222 11111 134899999999876332 221 1222 222222 26
Q ss_pred CCeEEEEEeCccCCCc
Q 016883 303 DKFIILAVNKCESPRK 318 (381)
Q Consensus 303 ~~p~ivV~NK~Dl~~~ 318 (381)
..|+.+|+||||+...
T Consensus 243 ~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 243 RFPVYLVLTKADLLAG 258 (1169)
T ss_pred CCCEEEEEecchhhcC
Confidence 8999999999999863
No 403
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.71 E-value=0.00027 Score=67.24 Aligned_cols=69 Identities=6% Similarity=-0.032 Sum_probs=38.2
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHH
Q 016883 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGE 346 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~ 346 (381)
..+-+++|++++.. . .+....++.+..-.+.-+++||.|.....-.-..-....+.|+..++ +|+++.+
T Consensus 184 ~~~~~~LVl~a~~~--~--~d~~~~~~~f~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 184 EPDYICLTLSASMK--S--KDMIEIITNFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMT--DGQDVKK 252 (270)
T ss_pred CCCeEEEEEcCccC--H--HHHHHHHHHhCCCCCCEEEEEeecCCCCccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 45678999998732 2 22333333322234456789999987643222222234566776664 4666653
No 404
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.0012 Score=57.49 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=49.8
Q ss_pred HHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhC-CCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCH
Q 016883 266 ATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY-MDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGT 344 (381)
Q Consensus 266 ~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi 344 (381)
..+++..||++ ++|--.+.......+.+.+.+.+ .++|++.++.+-+..+ ..+ ++...+.-++. .+-+|-
T Consensus 94 l~rA~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P--~v~--~ik~~~~v~v~---lt~~NR 164 (179)
T COG1618 94 LRRALEEADVI--IIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHP--LVQ--RIKKLGGVYVF---LTPENR 164 (179)
T ss_pred HHHHhhcCCEE--EEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCCh--HHH--HhhhcCCEEEE---Eccchh
Confidence 34445567877 66766566555566666666644 5899999999876421 111 12222222232 677777
Q ss_pred HHHHHHHHHHhhh
Q 016883 345 GELLDLVCSELKK 357 (381)
Q Consensus 345 ~~l~~~i~~~l~~ 357 (381)
+.++..+...|..
T Consensus 165 ~~i~~~Il~~L~~ 177 (179)
T COG1618 165 NRILNEILSVLKG 177 (179)
T ss_pred hHHHHHHHHHhcc
Confidence 7888888877754
No 405
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.00032 Score=64.56 Aligned_cols=156 Identities=14% Similarity=0.168 Sum_probs=88.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC----cccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN----RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~----~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
.++|.++|.-.+||||+-......- ......+...|++.... .=..+.+||.||+.++-...-
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~----sfinf~v~dfPGQ~~~Fd~s~--------- 93 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISN----SFINFQVWDFPGQMDFFDPSF--------- 93 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhh----hhcceEEeecCCccccCCCcc---------
Confidence 4589999999999999987665442 11222222223332221 113468999999987543221
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHh---CCCCeEEEEEeCccC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN---YMDKFIILAVNKCES 315 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~---~~~~p~ivV~NK~Dl 315 (381)
.....++.+-+++||+|+.+.+...-..+...+.+. .+++.+=+.+.|+|-
T Consensus 94 --------------------------D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDG 147 (347)
T KOG3887|consen 94 --------------------------DYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDG 147 (347)
T ss_pred --------------------------CHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccC
Confidence 122445788999999999864333222222222222 257778889999997
Q ss_pred CCcccc-----hhHH-----Hhh---CCCce-EEEecCCCCCHHHHHHHHHHHhhh
Q 016883 316 PRKGIM-----QVSE-----FWS---LGFSP-LPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 316 ~~~~~~-----~~~~-----~~~---~~~~~-~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+.++.. .... ... .++++ +...+.....|-+.|..+.+.+-+
T Consensus 148 Lsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyDHSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 148 LSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYDHSIFEAFSKVVQKLIP 203 (347)
T ss_pred CchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecchHHHHHHHHHHHHHhh
Confidence 764321 1111 111 12332 444445556788877777665543
No 406
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.62 E-value=0.00075 Score=69.11 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..++|+|++||||||++..|.+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 57899999999999999988753
No 407
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00036 Score=69.94 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..++++|++||||||++..|..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999988864
No 408
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.54 E-value=0.0011 Score=67.88 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=40.8
Q ss_pred CCeEEEEEeCccCCC---cc--c----chh----HHH--hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 303 DKFIILAVNKCESPR---KG--I----MQV----SEF--WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 303 ~~p~ivV~NK~Dl~~---~~--~----~~~----~~~--~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
++|++||++|+|... .+ . ... ++. ..++...|.+|++...+++.|+.+|.+.+....
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~~ 267 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGFP 267 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccCC
Confidence 589999999999743 11 1 111 111 245678899999999999999999988875444
No 409
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.52 E-value=0.00032 Score=59.88 Aligned_cols=106 Identities=17% Similarity=0.178 Sum_probs=60.9
Q ss_pred EEEcCCCCChhHHHHHHhCCCcccccCC-CCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCC
Q 016883 167 AIVGRPNVGKSALFNRLVGGNRAIVVDE-PGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (381)
Q Consensus 167 ~l~G~~gvGKSSLin~L~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (381)
+..|..|+|||++--.+...- +..+.. --...+.+...+ ...+.++|||+..+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~-~~~~~~~~~vd~D~~~~~~---~yd~VIiD~p~~~~---------------------- 57 (139)
T cd02038 4 VTSGKGGVGKTNISANLALAL-AKLGKRVLLLDADLGLANL---DYDYIIIDTGAGIS---------------------- 57 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHH-HHCCCcEEEEECCCCCCCC---CCCEEEEECCCCCC----------------------
Confidence 456789999999976655331 000000 000011111111 15679999997542
Q ss_pred CchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCC
Q 016883 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP 316 (381)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~ 316 (381)
......+..+|.+++|++.+..-.......++.+.+.....++.+|+|+++..
T Consensus 58 ------------------~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 58 ------------------DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred ------------------HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 13345678899999999987422222244556665543456788999999743
No 410
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.50 E-value=0.00029 Score=62.58 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=37.3
Q ss_pred cEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccc
Q 016883 274 CVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 274 d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
|++++|+|+..++...+.++.+.+.-...++|+++|+||+|+.++...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l 48 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENV 48 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHH
Confidence 789999999998888777777774211127999999999999875543
No 411
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.50 E-value=0.00059 Score=67.66 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...++++|++||||||.+-.|...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar 226 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR 226 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH
Confidence 668999999999999999887654
No 412
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.48 E-value=0.00037 Score=67.31 Aligned_cols=151 Identities=21% Similarity=0.260 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCC------c-------------------------ccccCCCCccccccee-----
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGN------R-------------------------AIVVDEPGVTRDRMYG----- 204 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~------~-------------------------~~~~~~~~tt~~~~~~----- 204 (381)
..+..++++|-.|+||||.|-.|...- + ..+.... ..++...
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~--G~DpAaVafDAi 214 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKE--GADPAAVAFDAI 214 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCC--CCCcHHHHHHHH
Confidence 347799999999999999998876431 0 0001000 0000000
Q ss_pred -eEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhcc-----ccEEEE
Q 016883 205 -RSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE-----SCVIIF 278 (381)
Q Consensus 205 -~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~d~ii~ 278 (381)
.-.-.+..+.|+||.|-. +...++|++|. ...+.+.. .|-+++
T Consensus 215 ~~Akar~~DvvliDTAGRL---hnk~nLM~EL~----------------------------KI~rV~~k~~~~ap~e~ll 263 (340)
T COG0552 215 QAAKARGIDVVLIDTAGRL---HNKKNLMDELK----------------------------KIVRVIKKDDPDAPHEILL 263 (340)
T ss_pred HHHHHcCCCEEEEeCcccc---cCchhHHHHHH----------------------------HHHHHhccccCCCCceEEE
Confidence 001135678999999975 34456777763 22233333 344888
Q ss_pred EEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHHHHHH
Q 016883 279 LVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDL 350 (381)
Q Consensus 279 VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~ 350 (381)
|+|+..+-.... -.+...+. -.-.-+++||+|-..+.-.-..-....+.|+.++- -|+++++|...
T Consensus 264 vlDAttGqnal~--QAk~F~ea--v~l~GiIlTKlDgtAKGG~il~I~~~l~~PI~fiG--vGE~~~DL~~F 329 (340)
T COG0552 264 VLDATTGQNALS--QAKIFNEA--VGLDGIILTKLDGTAKGGIILSIAYELGIPIKFIG--VGEGYDDLRPF 329 (340)
T ss_pred EEEcccChhHHH--HHHHHHHh--cCCceEEEEecccCCCcceeeeHHHHhCCCEEEEe--CCCChhhcccc
Confidence 889986543322 22222222 11235779999954433222222245677877764 47888887654
No 413
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.47 E-value=0.00026 Score=71.39 Aligned_cols=78 Identities=21% Similarity=0.191 Sum_probs=66.8
Q ss_pred HHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH--HHhhCCCceEEEecCC
Q 016883 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS--EFWSLGFSPLPISAIS 340 (381)
Q Consensus 263 ~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~--~~~~~~~~~~~vSA~~ 340 (381)
-++.+..+...|+||.++|+.+++-.....+.+++++....+..++++||+||+........ .+...++++++.||..
T Consensus 165 WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 165 WRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALA 244 (562)
T ss_pred HHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEeccc
Confidence 35788899999999999999999888888888888887667889999999999998877665 4456778999999987
No 414
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.45 E-value=0.00083 Score=61.83 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=31.2
Q ss_pred HhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC-CeEEEEEeCccCC
Q 016883 269 AIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD-KFIILAVNKCESP 316 (381)
Q Consensus 269 ~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~-~p~ivV~NK~Dl~ 316 (381)
..+.+|.++.|+|++...-.....+.+...+. + +++.+|+||+|..
T Consensus 152 ~~~~vD~vivVvDpS~~sl~taeri~~L~~el--g~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPSYKSLRTAERIKELAEEL--GIKRIFVVLNKVDEE 198 (255)
T ss_pred cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHh--CCceEEEEEeeccch
Confidence 34689999999998853222223333333333 5 8999999999965
No 415
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.45 E-value=0.00044 Score=70.06 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..++|+|++||||||++..|..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999877653
No 416
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.41 E-value=0.0016 Score=65.10 Aligned_cols=69 Identities=6% Similarity=-0.010 Sum_probs=38.7
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCH-HHHHH
Q 016883 275 VIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGT-GELLD 349 (381)
Q Consensus 275 ~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi-~~l~~ 349 (381)
-+++|+|++.+.. .+.+.+.+...-.+.=+++||.|.....-.-..-....+.|+..++ +|+++ +++..
T Consensus 288 e~~LVlsat~~~~----~~~~~~~~~~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl~~ 357 (388)
T PRK12723 288 EFHLAVSSTTKTS----DVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVT--DGQIVPHNISI 357 (388)
T ss_pred eEEEEEcCCCCHH----HHHHHHHHhcCCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEe--CCCCChhhhhh
Confidence 5789999986422 2223444431123557789999986543222222234566776664 57777 55543
No 417
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.41 E-value=0.0024 Score=63.57 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHH--HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 289 ADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSE--FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 289 ~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~--~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.+..++..|++. ++|+++++|-.+-...+..+... ...++.|++++++..- .-+++...+.+.|-+.+
T Consensus 168 AEervI~ELk~i--gKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l-~~~DI~~Il~~vLyEFP 237 (492)
T PF09547_consen 168 AEERVIEELKEI--GKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQL-REEDITRILEEVLYEFP 237 (492)
T ss_pred HHHHHHHHHHHh--CCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHc-CHHHHHHHHHHHHhcCC
Confidence 445678888887 99999999999866554433222 2467889999988653 24444444444444433
No 418
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.39 E-value=0.00072 Score=66.19 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=69.2
Q ss_pred eEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC
Q 016883 205 RSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (381)
Q Consensus 205 ~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~ 284 (381)
.+.+++..+.++|.+|+..-+ +.+...+.++++|+||+..++
T Consensus 189 ~F~~k~~~f~~~DvGGQRseR--------------------------------------rKWihcFe~v~aviF~vslSe 230 (354)
T KOG0082|consen 189 EFTIKGLKFRMFDVGGQRSER--------------------------------------KKWIHCFEDVTAVIFCVSLSE 230 (354)
T ss_pred EEEeCCCceEEEeCCCcHHHh--------------------------------------hhHHHhhcCCCEEEEEEehhh
Confidence 455667788899999976422 244457789999999998776
Q ss_pred C--CCh---------hHHHHHHHHHH--hCCCCeEEEEEeCccCCCccc------------------chhHH-----Hhh
Q 016883 285 G--LTA---------ADEEIADWLRK--NYMDKFIILAVNKCESPRKGI------------------MQVSE-----FWS 328 (381)
Q Consensus 285 ~--~~~---------~~~~~~~~l~~--~~~~~p~ivV~NK~Dl~~~~~------------------~~~~~-----~~~ 328 (381)
- ... +...+++.+.. .+.+.++|+.+||.|+..+.. ..... +..
T Consensus 231 Ydq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~ 310 (354)
T KOG0082|consen 231 YDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEE 310 (354)
T ss_pred hhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHH
Confidence 1 111 11223444433 246899999999999853211 01111 111
Q ss_pred ----C--CCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 329 ----L--GFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 329 ----~--~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
. .+-+..+.|..-.+|+.++..+.+.+.
T Consensus 311 l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii 344 (354)
T KOG0082|consen 311 LNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTII 344 (354)
T ss_pred HhcccCCcceEEEEeeccHHHHHHHHHHHHHHHH
Confidence 1 112345577777788888887776654
No 419
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.36 E-value=0.0015 Score=63.79 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=42.1
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHH----hhCCCceEEEecCCCCCHHHH
Q 016883 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF----WSLGFSPLPISAISGTGTGEL 347 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~----~~~~~~~~~vSA~~g~gi~~l 347 (381)
..|.++-|+|+.+-....+. ..+.+.+++ .-.-++|+||+|+.+....+..+. .....+++.+|. .+.+..++
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~-~~~~~~~Qi-a~AD~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~l 192 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDA-IAELAEDQL-AFADVIVLNKTDLVDAEELEALEARLRKLNPRARIIETSY-GDVDLAEL 192 (323)
T ss_pred eeceEEEEEeHHHhhhhHHH-HHHHHHHHH-HhCcEEEEecccCCCHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHh
Confidence 46789999999864332221 222222221 345689999999998765444332 223446677766 33444333
Q ss_pred H
Q 016883 348 L 348 (381)
Q Consensus 348 ~ 348 (381)
+
T Consensus 193 l 193 (323)
T COG0523 193 L 193 (323)
T ss_pred h
Confidence 3
No 420
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.22 E-value=0.00048 Score=62.27 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
-..++|+.|+||||+.+.+..
T Consensus 5 a~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 5 AQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eEEEEccCCCCcchHHHHHHH
Confidence 357899999999999998764
No 421
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.0016 Score=63.83 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhC
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
++-.|.++|-.|+||||.+..|..
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~ 123 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAY 123 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHH
Confidence 456899999999999999877653
No 422
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.18 E-value=0.00061 Score=62.61 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=15.4
Q ss_pred EEEEcCCCCChhHHHHHH
Q 016883 166 VAIVGRPNVGKSALFNRL 183 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L 183 (381)
.+++|+||+||||..+-+
T Consensus 5 qvVIGPPgSGKsTYc~g~ 22 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGM 22 (290)
T ss_pred eEEEcCCCCCccchhhhH
Confidence 478999999999997754
No 423
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.17 E-value=0.00051 Score=61.17 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=18.8
Q ss_pred CEEEEEcCCCCChhHHHHHHh
Q 016883 164 PRVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~ 184 (381)
|.+++.|+.|+|||||++.++
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll 21 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLL 21 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 367899999999999999998
No 424
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.12 E-value=0.0031 Score=61.53 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.+..++.|+-|+|||||+|.++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 568899999999999999999854
No 425
>PRK13695 putative NTPase; Provisional
Probab=97.08 E-value=0.0088 Score=52.79 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=45.7
Q ss_pred HHHHhccccEEEEEEe---CCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCC
Q 016883 266 ATAAIEESCVIIFLVD---GQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGT 342 (381)
Q Consensus 266 ~~~~l~~~d~ii~VvD---~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~ 342 (381)
+...+..+++ +++| ..+.......+.+..+.+. +.|++++.||.... ...+... ...+..++.+ +.+
T Consensus 90 ~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~--~~~~i~v~h~~~~~--~~~~~i~-~~~~~~i~~~---~~~ 159 (174)
T PRK13695 90 LERALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDS--EKPVIATLHRRSVH--PFVQEIK-SRPGGRVYEL---TPE 159 (174)
T ss_pred HHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhC--CCeEEEEECchhhH--HHHHHHh-ccCCcEEEEE---cch
Confidence 4444567787 4778 3333334444555555444 89999999985321 1111111 1223345555 667
Q ss_pred CHHHHHHHHHHHhh
Q 016883 343 GTGELLDLVCSELK 356 (381)
Q Consensus 343 gi~~l~~~i~~~l~ 356 (381)
|=+++...+.+.++
T Consensus 160 ~r~~~~~~~~~~~~ 173 (174)
T PRK13695 160 NRDSLPFEILNRLK 173 (174)
T ss_pred hhhhHHHHHHHHHh
Confidence 77788888877654
No 426
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.02 E-value=0.0026 Score=51.64 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=29.9
Q ss_pred HHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhC-C-CCeEEEEEeC
Q 016883 266 ATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY-M-DKFIILAVNK 312 (381)
Q Consensus 266 ~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~-~-~~p~ivV~NK 312 (381)
+...+..+|.+++|++.+..-...-..+++.+++.. . ...+.+|+||
T Consensus 58 ~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 58 SLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 345667899999999887433333345566665542 2 3567788886
No 427
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0039 Score=62.67 Aligned_cols=68 Identities=12% Similarity=0.158 Sum_probs=40.5
Q ss_pred hccccEEEEEEeCCCCCChhH--HHHHHHHHHhC-CCCeEEEEEeCccCCCcccchhHHH-hhCCCceEEEe
Q 016883 270 IEESCVIIFLVDGQAGLTAAD--EEIADWLRKNY-MDKFIILAVNKCESPRKGIMQVSEF-WSLGFSPLPIS 337 (381)
Q Consensus 270 l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~~~~~~~~-~~~~~~~~~vS 337 (381)
....|.|++|-.+--+-...+ ..+-+.+...- +..---++++|+|..++..-..... +..+.|++++-
T Consensus 494 ~~~pd~i~~vgealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~fvg 565 (587)
T KOG0781|consen 494 VNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILFVG 565 (587)
T ss_pred cCCCceEEEehhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccchhhHHHHHhhheeecCCceEEEe
Confidence 356999999976654433333 23334444331 1122467899999988765555443 34567887774
No 428
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.96 E-value=0.011 Score=51.75 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=32.0
Q ss_pred HHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 268 ~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
..+..+|.+++|++++......-..+++.+... ......+|+|++|...
T Consensus 80 ~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 80 TAIAPADEALLVTTPEISSLRDADRVKGLLEAL-GIKVVGVIVNRVRPDM 128 (179)
T ss_pred HHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHc-CCceEEEEEeCCcccc
Confidence 445789999999988753322224455555553 2345678999998654
No 429
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0056 Score=68.52 Aligned_cols=128 Identities=23% Similarity=0.235 Sum_probs=68.8
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCC-ccccc-----CCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhh
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGN-RAIVV-----DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~-~~~~~-----~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 237 (381)
+=-+++|++|+||||++..--... ..... ..++ |+++.. +-+....++||.|-.-......
T Consensus 126 PWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdw----wf~deaVlIDtaGry~~q~s~~-------- 192 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDW----WFTDEAVLIDTAGRYITQDSAD-------- 192 (1188)
T ss_pred CceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCc----ccccceEEEcCCcceecccCcc--------
Confidence 344889999999999987543221 11111 1112 333331 1244568999999765433111
Q ss_pred hhccCCCCCchhhHHHHHhcchhHHHH-HHHHHhccccEEEEEEeCCCCCCh--hHH-HHHHHHHH-------hC-CCCe
Q 016883 238 TTTIGMEGIPLATREAAVARMPSMIER-QATAAIEESCVIIFLVDGQAGLTA--ADE-EIADWLRK-------NY-MDKF 305 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~d~ii~VvD~~~~~~~--~~~-~~~~~l~~-------~~-~~~p 305 (381)
+.....|..++.- .-.+..+..++||+.+++.+-.+. .+. .....++. .+ ...|
T Consensus 193 --------------~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~P 258 (1188)
T COG3523 193 --------------EVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLP 258 (1188)
T ss_pred --------------hhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 1111222222110 011123458999999998763332 222 22333333 22 5899
Q ss_pred EEEEEeCccCCCc
Q 016883 306 IILAVNKCESPRK 318 (381)
Q Consensus 306 ~ivV~NK~Dl~~~ 318 (381)
+.+++||.|+...
T Consensus 259 VYl~lTk~Dll~G 271 (1188)
T COG3523 259 VYLVLTKADLLPG 271 (1188)
T ss_pred eEEEEeccccccc
Confidence 9999999999874
No 430
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.88 E-value=0.0052 Score=61.41 Aligned_cols=73 Identities=18% Similarity=0.283 Sum_probs=44.6
Q ss_pred CceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChh
Q 016883 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA 289 (381)
Q Consensus 210 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~ 289 (381)
+..+.|+||.|-.. ..+.+++++ ......-+.|=+++|+|+.-+...
T Consensus 182 ~~DvvIvDTAGRl~---ide~Lm~El-----------------------------~~Ik~~~~P~E~llVvDam~GQdA- 228 (451)
T COG0541 182 GYDVVIVDTAGRLH---IDEELMDEL-----------------------------KEIKEVINPDETLLVVDAMIGQDA- 228 (451)
T ss_pred CCCEEEEeCCCccc---ccHHHHHHH-----------------------------HHHHhhcCCCeEEEEEecccchHH-
Confidence 34689999999653 334455554 334445678999999998754322
Q ss_pred HHHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 290 DEEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 290 ~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
........+.+ +. .=+|+||.|-...
T Consensus 229 -~~~A~aF~e~l-~i-tGvIlTKlDGdaR 254 (451)
T COG0541 229 -VNTAKAFNEAL-GI-TGVILTKLDGDAR 254 (451)
T ss_pred -HHHHHHHhhhc-CC-ceEEEEcccCCCc
Confidence 33444444431 11 2467999996543
No 431
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.83 E-value=0.00076 Score=56.12 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=60.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
-+++.|++|+|||++++.+............ ...+..++.|...........+.++++. +
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~i~~~l~~------~ 65 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKN--------------HPDVIYVNCPSSRTPRDFAQEILEALGL------P 65 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--------------CEEEEEEEHHHHSSHHHHHHHHHHHHT-------S
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--------------CCcEEEEEeCCCCCHHHHHHHHHHHhCc------c
Confidence 6789999999999999999876321111000 2223455555444322333333344321 1
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHh--CCCCeEEEEEeC
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN--YMDKFIILAVNK 312 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~--~~~~p~ivV~NK 312 (381)
...-.+ ...+.+.....+......++|+|-.+.+. +.+++..++.. ..+.+++++++-
T Consensus 66 ~~~~~~--------~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 66 LKSRQT--------SDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp SSSTS---------HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ccccCC--------HHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 111001 11122345555666666888999766552 34555555443 245667777654
No 432
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.80 E-value=0.0042 Score=61.17 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.+..++.|+-|+|||||+|.++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 457899999999999999999854
No 433
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.76 E-value=0.0063 Score=59.97 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=55.7
Q ss_pred HHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHH-HhhCCC-ceEEEecCC
Q 016883 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSE-FWSLGF-SPLPISAIS 340 (381)
Q Consensus 264 ~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~-~~~~~~-~~~~vSA~~ 340 (381)
+.....+..+|+|+.|+|+.+|+.....++-+.+...-.++..|+|+||+|+.+.+..+... +....+ .+.+.++..
T Consensus 138 ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~ 216 (435)
T KOG2484|consen 138 KEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQ 216 (435)
T ss_pred HHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccc
Confidence 45666778899999999999998887777777775443369999999999999988777543 233333 344444433
No 434
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.76 E-value=0.002 Score=57.90 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=35.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEE
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVD 217 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liD 217 (381)
..-++++|++|+|||||+++|+..........++||+....+.. +|....+++
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~--~G~dY~fvs 56 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDE--EGKTYFFLT 56 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCC--CCceeEeCC
Confidence 34789999999999999999987643233345677776644332 344444543
No 435
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.75 E-value=0.0058 Score=58.59 Aligned_cols=92 Identities=17% Similarity=0.131 Sum_probs=61.1
Q ss_pred ccccEEEEEEeCCCCCChhH-H-HHHHHHHHhCCCCeEEEEEeCccCCCcccchh--H--HHhhCCCceEEEecCCCCCH
Q 016883 271 EESCVIIFLVDGQAGLTAAD-E-EIADWLRKNYMDKFIILAVNKCESPRKGIMQV--S--EFWSLGFSPLPISAISGTGT 344 (381)
Q Consensus 271 ~~~d~ii~VvD~~~~~~~~~-~-~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~--~--~~~~~~~~~~~vSA~~g~gi 344 (381)
.+.|-+++|+.+.+|..... . ..+-.... .++.-++|+||+|+.+...... . .+...+++++.+|+++++|+
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~ 155 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGL 155 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccH
Confidence 34666677777665433322 1 12222222 3788888899999998665542 1 12457889999999999999
Q ss_pred HHHHHHHHHHhhhcccccch
Q 016883 345 GELLDLVCSELKKVEVCIGF 364 (381)
Q Consensus 345 ~~l~~~i~~~l~~~~~~~~~ 364 (381)
++|.+++...+.-....+++
T Consensus 156 ~~l~~~l~~~~svl~GqSGV 175 (301)
T COG1162 156 EELAELLAGKITVLLGQSGV 175 (301)
T ss_pred HHHHHHhcCCeEEEECCCCC
Confidence 99999988765544444444
No 436
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.74 E-value=0.0055 Score=58.81 Aligned_cols=126 Identities=19% Similarity=0.236 Sum_probs=77.6
Q ss_pred CCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 160 ~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..+.+.++++|++|.|||++++++........ + . . . ....+..+.+|.--+....-..++++++.
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d-~--~--~-------~~~PVv~vq~P~~p~~~~~Y~~IL~~lga-- 122 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-D-E--D--A-------ERIPVVYVQMPPEPDERRFYSAILEALGA-- 122 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-C-C--C--C-------ccccEEEEecCCCCChHHHHHHHHHHhCc--
Confidence 34578899999999999999999987653211 1 1 0 0 12256788888765554444556666643
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC----CCChhHHHHHHHHHHhC--CCCeEEEEEeC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA----GLTAADEEIADWLRKNY--MDKFIILAVNK 312 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~----~~~~~~~~~~~~l~~~~--~~~p~ivV~NK 312 (381)
|....... ...+.++...+....+=++|+|=-+ +.....++++..++... .++|+|.|+++
T Consensus 123 -------P~~~~~~~-----~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 123 -------PYRPRDRV-----AKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred -------ccCCCCCH-----HHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 22222211 1234456677888889999999443 33334455655555521 37999988765
No 437
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.0012 Score=58.75 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=35.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT 218 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDT 218 (381)
-+++.|++||||||++++|.... ..--..+.||+....+.. +|....|++.
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv--~G~dY~Fvs~ 56 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEV--DGVDYFFVTE 56 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCc--CCceeEeCCH
Confidence 67899999999999999999876 333334567776655433 4555555553
No 438
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.60 E-value=0.0017 Score=57.43 Aligned_cols=69 Identities=10% Similarity=0.092 Sum_probs=32.0
Q ss_pred ccccEEEEEEeCCCCCChhHHHHHHHHHHhC-CCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCH
Q 016883 271 EESCVIIFLVDGQAGLTAADEEIADWLRKNY-MDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGT 344 (381)
Q Consensus 271 ~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi 344 (381)
..+| ++|+|=-.++......+.+.+.+.+ .++|++.++.+.- .....+... ...+..++.++..+.+-+
T Consensus 94 ~~~~--liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~--~~~~l~~i~-~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 94 SSSD--LIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKRS--DNPFLEEIK-RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp HCCH--EEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS----SCCHHHHH-TTTTSEEEE--TTTCCCH
T ss_pred CCCC--EEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecCC--CcHHHHHHH-hCCCcEEEEeChhHHhhH
Confidence 5566 5688855555444444555444433 3789999998883 112222222 223456677766555443
No 439
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.58 E-value=0.021 Score=50.46 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=35.4
Q ss_pred HHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 267 TAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 267 ~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
...+..+|.+++|+.++..-...-..+++.+++. +.|+.+|+||+|....
T Consensus 109 ~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~--~~~~~vV~N~~~~~~~ 158 (179)
T cd03110 109 IASLTGADAALLVTEPTPSGLHDLERAVELVRHF--GIPVGVVINKYDLNDE 158 (179)
T ss_pred HHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcc
Confidence 3456789999999998843222225566666665 7788999999997543
No 440
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.50 E-value=0.016 Score=44.76 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=29.8
Q ss_pred EEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCC
Q 016883 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~ 223 (381)
+++.|..|+||||+...+...-. . ... .....+ .+.++|+||...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~-~-~g~---------~v~~~~--d~iivD~~~~~~ 46 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALA-K-RGK---------RVLLID--DYVLIDTPPGLG 46 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-H-CCC---------eEEEEC--CEEEEeCCCCcc
Confidence 57889999999999998876431 1 000 011111 679999998764
No 441
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.49 E-value=0.0098 Score=47.60 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=42.1
Q ss_pred EEEEc-CCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 166 VAIVG-RPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 166 v~l~G-~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+++.| ..|+||||+.-.|...- +..+ .+-.-.+.. ....+.++|||+...
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~~-~~vl~~d~d------~~~d~viiD~p~~~~--------------------- 52 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARRG-KRVLLIDLD------PQYDYIIIDTPPSLG--------------------- 52 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhCC-CcEEEEeCC------CCCCEEEEeCcCCCC---------------------
Confidence 45666 68999999987765432 1101 100000000 014578999998753
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~ 284 (381)
..+...+..+|.++++++.+.
T Consensus 53 -------------------~~~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 53 -------------------LLTRNALAAADLVLIPVQPSP 73 (104)
T ss_pred -------------------HHHHHHHHHCCEEEEeccCCH
Confidence 133356678999999998774
No 442
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.47 E-value=0.0039 Score=56.90 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCccccc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDR 201 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~ 201 (381)
...++++|++|+|||||++.|...........++||+..
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~ 51 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPK 51 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCC
Confidence 447788999999999999999754322223334555543
No 443
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.43 E-value=0.0098 Score=58.14 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=62.9
Q ss_pred HHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHH--hh-CCCceEEEecCC
Q 016883 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF--WS-LGFSPLPISAIS 340 (381)
Q Consensus 264 ~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~--~~-~~~~~~~vSA~~ 340 (381)
++....+..+|+|+.|+|+.++.......+-+.+. +++.++|+||+|+.+......... .. .+...+.+|++.
T Consensus 26 ~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~ 101 (322)
T COG1161 26 RQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKS 101 (322)
T ss_pred HHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeec
Confidence 35667778999999999999988887766666665 556699999999998766444322 12 255789999999
Q ss_pred CCCHHHHHHH
Q 016883 341 GTGTGELLDL 350 (381)
Q Consensus 341 g~gi~~l~~~ 350 (381)
+.+...+...
T Consensus 102 ~~~~~~i~~~ 111 (322)
T COG1161 102 RQGGKKIRKA 111 (322)
T ss_pred ccCccchHHH
Confidence 9988887743
No 444
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.40 E-value=0.0086 Score=57.03 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=23.4
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHhCC
Q 016883 159 PEHLLPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 159 ~~~~~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
+..+.+...+.|.-|+|||||+|.++..
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHcc
Confidence 3445678899999999999999998755
No 445
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.0025 Score=59.27 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNR 188 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~ 188 (381)
-|.++|+||||||||+|.+.|-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 679999999999999999998653
No 446
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.33 E-value=0.0053 Score=54.25 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=34.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~ 221 (381)
.++++|++|+|||||++.|.............+|+....+. ..+..+.+++...+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~ 57 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEF 57 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHH
Confidence 68999999999999999999864322223334454443322 23445566665443
No 447
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.27 E-value=0.022 Score=52.65 Aligned_cols=83 Identities=10% Similarity=0.059 Sum_probs=47.1
Q ss_pred HHhccccEEEEEEeCCCCCChhHHHHHHHHHH----hCCCCeEEEEEeCccCCCcccc-hhHHHhhCCCceEEEecCCCC
Q 016883 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRK----NYMDKFIILAVNKCESPRKGIM-QVSEFWSLGFSPLPISAISGT 342 (381)
Q Consensus 268 ~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~----~~~~~p~ivV~NK~Dl~~~~~~-~~~~~~~~~~~~~~vSA~~g~ 342 (381)
..+..+|+|++=.-.+.---.+-.+.++.+.+ ....+|.-+++|++.-...... ........++|++.+.-....
T Consensus 101 ~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~~~~~~~~~e~~~~lpvl~t~l~eR~ 180 (231)
T PF07015_consen 101 YAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARLTRAQRIISEQLESLPVLDTELHERD 180 (231)
T ss_pred HHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchhhHHHHHHHHHHhcCCccccccccHH
Confidence 44567999876544432111111233333333 2357899999999974322111 111111236889999888888
Q ss_pred CHHHHHHH
Q 016883 343 GTGELLDL 350 (381)
Q Consensus 343 gi~~l~~~ 350 (381)
.+.+++..
T Consensus 181 Af~~m~~~ 188 (231)
T PF07015_consen 181 AFRAMFSR 188 (231)
T ss_pred HHHHHHHh
Confidence 88877774
No 448
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.22 E-value=0.025 Score=55.76 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=65.5
Q ss_pred HHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH-HHhhCCCce--EEEecCCC
Q 016883 265 QATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-EFWSLGFSP--LPISAISG 341 (381)
Q Consensus 265 ~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~-~~~~~~~~~--~~vSA~~g 341 (381)
.....+...|++|-|+|+.++.......+-.++++..+.+++|+|+||||+++.-..... .......|. |..|-.+.
T Consensus 206 ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~ns 285 (572)
T KOG2423|consen 206 ELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNS 285 (572)
T ss_pred HHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCc
Confidence 344566789999999999999888888888889888778999999999999875433222 112334443 55565566
Q ss_pred CCHHHHHHHHHHHhh
Q 016883 342 TGTGELLDLVCSELK 356 (381)
Q Consensus 342 ~gi~~l~~~i~~~l~ 356 (381)
.|-..|++.+.+..+
T Consensus 286 fGKgalI~llRQf~k 300 (572)
T KOG2423|consen 286 FGKGALIQLLRQFAK 300 (572)
T ss_pred cchhHHHHHHHHHHh
Confidence 666667776666443
No 449
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.20 E-value=0.0066 Score=51.67 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=32.8
Q ss_pred EEEEcCCCCChhHHHHHHhCCCcc-cccCCCCcccccceeeEEeCCceEEEEEcCC
Q 016883 166 VAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGG 220 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG 220 (381)
++++|++|+|||||++.|...... .....+++|+...... .++....++|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~ 55 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEE 55 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHH
Confidence 588999999999999999876321 1223334555443322 2455566666443
No 450
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.15 E-value=0.0051 Score=45.00 Aligned_cols=21 Identities=29% Similarity=0.404 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
..++.|++|+|||||++++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999998764
No 451
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.02 E-value=0.0055 Score=50.27 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
+|++.|+||+||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 452
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.039 Score=53.60 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
...|+++|..|+|||||++.|.+..
T Consensus 188 f~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 188 FTVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eeEEEeecCCCccHHHHHHHHhccC
Confidence 4578999999999999999998763
No 453
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.98 E-value=0.0082 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+..
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999998763
No 454
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.94 E-value=0.0086 Score=53.18 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.+.+.++|++|+|||||+++|.+.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 558899999999999999999865
No 455
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.92 E-value=0.0055 Score=56.58 Aligned_cols=24 Identities=50% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNR 188 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~ 188 (381)
.|+++|++|+|||||+|.+.+-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 789999999999999999887653
No 456
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.90 E-value=0.0066 Score=54.12 Aligned_cols=24 Identities=42% Similarity=0.570 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNR 188 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~ 188 (381)
+++++|++|+|||||+|.+.|-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 889999999999999999988653
No 457
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.88 E-value=0.007 Score=50.84 Aligned_cols=23 Identities=48% Similarity=0.538 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 78999999999999999999875
No 458
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.83 E-value=0.0088 Score=63.68 Aligned_cols=82 Identities=16% Similarity=0.049 Sum_probs=46.2
Q ss_pred HHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhC-CCCeEEEEEeCccCCCcccchhHHH----hhCCCceEEEe
Q 016883 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY-MDKFIILAVNKCESPRKGIMQVSEF----WSLGFSPLPIS 337 (381)
Q Consensus 263 ~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~~~~~~~~----~~~~~~~~~vS 337 (381)
......++...+.+++.+.+.+ ......+.+...++.- .+..++.|++|.|+.+++....... .....+++.+.
T Consensus 159 ~~mi~~yi~~~~~iILav~~an-~d~ats~alkiarevDp~g~RTigvitK~DlmdkGt~~~~~L~g~~~~l~~g~v~vv 237 (657)
T KOG0446|consen 159 KSMIEEYIEKPNRIILAVTPAN-SDIATSPALVVAREVDPGGSRTLEVITKFDFMDKGTNAVTRLVGRPITLKVGYVGVV 237 (657)
T ss_pred HHHHHHhccccchhhhhccchh-hhhhcCHHHHHHHhhCCCccchhHHhhhHHhhhcCCcceeeecCCccccccceeeee
Confidence 3455677888888888887664 1122233444444422 2667888999999877543222211 22334556665
Q ss_pred cCCCCCHH
Q 016883 338 AISGTGTG 345 (381)
Q Consensus 338 A~~g~gi~ 345 (381)
.+.+..++
T Consensus 238 nR~q~di~ 245 (657)
T KOG0446|consen 238 NRSQSIID 245 (657)
T ss_pred ccchhhhh
Confidence 55555443
No 459
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.75 E-value=0.041 Score=48.23 Aligned_cols=44 Identities=11% Similarity=-0.105 Sum_probs=29.4
Q ss_pred ccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeE-EEEEeCccCC
Q 016883 271 EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI-ILAVNKCESP 316 (381)
Q Consensus 271 ~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~-ivV~NK~Dl~ 316 (381)
..+|.+++|+.+.......-..+++.+.+. +.++ -+|+|+++..
T Consensus 90 ~~ad~viiV~~p~~~s~~~~~~~~~~l~~~--~~~~~gvv~N~~~~~ 134 (169)
T cd02037 90 LPIDGAVIVTTPQEVALDDVRKAIDMFKKV--NIPILGVVENMSYFV 134 (169)
T ss_pred cCCCeEEEEECCchhhHHHHHHHHHHHHhc--CCCeEEEEEcCCccc
Confidence 578999999987742222335667777765 4444 5789999853
No 460
>PLN02772 guanylate kinase
Probab=95.66 E-value=0.016 Score=57.82 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcc-cccCCCCcccccceeeEEeCCceEEEEE
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGEHEFMLVD 217 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~liD 217 (381)
..-++|+|++||||+||+++|...... .....++||+....... +|..+.|++
T Consensus 135 ~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~--dG~dY~Fvs 188 (398)
T PLN02772 135 EKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEK--DGVHYHFTE 188 (398)
T ss_pred CcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCccccc--CCceEeeCC
Confidence 447899999999999999999876422 22345678877755432 344444543
No 461
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.57 E-value=0.0088 Score=58.54 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
-++++|++|||||||++.+.|-.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999865
No 462
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.55 E-value=0.099 Score=46.57 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=27.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCc-ccccCCCCcccccc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNR-AIVVDEPGVTRDRM 202 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~-~~~~~~~~tt~~~~ 202 (381)
-++++|++|+||+|+++.|..... ......++||+...
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r 42 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPR 42 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCC
Confidence 578999999999999999987742 12333445665543
No 463
>PHA02518 ParA-like protein; Provisional
Probab=95.53 E-value=0.18 Score=45.33 Aligned_cols=52 Identities=10% Similarity=0.043 Sum_probs=28.5
Q ss_pred HHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHH---hCCCCe-EEEEEeCccCC
Q 016883 265 QATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK---NYMDKF-IILAVNKCESP 316 (381)
Q Consensus 265 ~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~---~~~~~p-~ivV~NK~Dl~ 316 (381)
.+...+..+|.+|+++.++..--..-..+.+.+.. ...+.+ ..++.|+.+..
T Consensus 91 ~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 91 LARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred HHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 44566778999999998874221111233333332 222344 45677877643
No 464
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.43 E-value=0.036 Score=55.52 Aligned_cols=78 Identities=22% Similarity=0.233 Sum_probs=51.5
Q ss_pred ceeeEEe-CCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEE
Q 016883 202 MYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLV 280 (381)
Q Consensus 202 ~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~Vv 280 (381)
....+.+ ++..+.++|+.|....+.. +..++..+++||||+
T Consensus 226 ~e~~f~~~~~~~~~~~DvGGqr~eRkK--------------------------------------W~~~F~~v~~vif~v 267 (389)
T PF00503_consen 226 TEIDFNFSGSRKFRLIDVGGQRSERKK--------------------------------------WIHCFEDVTAVIFVV 267 (389)
T ss_dssp EEEEEEE-TTEEEEEEEETSSGGGGGG--------------------------------------GGGGGTTESEEEEEE
T ss_pred eEEEEEeecccccceecCCCCchhhhh--------------------------------------HHHHhccccEEEEee
Confidence 3334566 7788999999999764443 335667899999999
Q ss_pred eCCC--------CCChh---HHHHHHHHHH--hCCCCeEEEEEeCccCCC
Q 016883 281 DGQA--------GLTAA---DEEIADWLRK--NYMDKFIILAVNKCESPR 317 (381)
Q Consensus 281 D~~~--------~~~~~---~~~~~~~l~~--~~~~~p~ivV~NK~Dl~~ 317 (381)
+.++ ..+.. ...+++.+.. .+.+.|+++++||.|+..
T Consensus 268 sls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~ 317 (389)
T PF00503_consen 268 SLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFE 317 (389)
T ss_dssp EGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHH
T ss_pred cccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHH
Confidence 9764 11111 1334444443 346899999999999753
No 465
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.40 E-value=0.014 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.+.++|.+|+|||||+++|...
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 466
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.38 E-value=0.015 Score=53.10 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|+||+|||||+.++-+-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 88999999999999999987765
No 467
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.37 E-value=0.076 Score=50.27 Aligned_cols=62 Identities=27% Similarity=0.258 Sum_probs=38.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcc-cccCCC-CcccccceeeEE---eCCceEEEEEcCCCCCc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEP-GVTRDRMYGRSF---WGEHEFMLVDTGGVLNV 224 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~-~~~~~~-~tt~~~~~~~~~---~~~~~~~liDTPG~~~~ 224 (381)
...|.++|+...|||.|+|.|++.... .++... .+|...-..... .++..+.++||.|+.+.
T Consensus 21 v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 21 VAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp EEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred EEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 448899999999999999999975321 222221 233322111111 12346899999999873
No 468
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.37 E-value=0.012 Score=49.54 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=18.8
Q ss_pred EEEEcCCCCChhHHHHHHhCC
Q 016883 166 VAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~ 186 (381)
|+++|+||+||||++..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998743
No 469
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.33 E-value=0.093 Score=51.28 Aligned_cols=24 Identities=46% Similarity=0.617 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++++|+.++|||||...|+.-
T Consensus 103 GPrv~vVGp~d~GKsTl~r~L~ny 126 (415)
T KOG2749|consen 103 GPRVMVVGPTDVGKSTLCRILLNY 126 (415)
T ss_pred CCEEEEECCCccchHHHHHHHHHH
Confidence 569999999999999999888753
No 470
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.26 E-value=0.014 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999765
No 471
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.24 E-value=0.014 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNR 188 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~ 188 (381)
-+.++|+||+|||||++.+.+...
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhc
Confidence 568999999999999999998764
No 472
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.23 E-value=0.015 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.++++|++|+|||||++.+.+
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 889999999999999998864
No 473
>PRK08118 topology modulation protein; Reviewed
Probab=95.22 E-value=0.016 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
+|+++|++|+|||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999988754
No 474
>PRK07261 topology modulation protein; Provisional
Probab=95.22 E-value=0.015 Score=51.39 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
+|+++|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999998653
No 475
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.21 E-value=0.015 Score=52.74 Aligned_cols=23 Identities=43% Similarity=0.411 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 476
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.17 E-value=0.018 Score=42.85 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.0
Q ss_pred EEEEcCCCCChhHHHHHHhCC
Q 016883 166 VAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~ 186 (381)
++++|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998865
No 477
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.17 E-value=0.015 Score=51.78 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 88999999999999999999864
No 478
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.016 Score=53.58 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 479
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.13 E-value=0.017 Score=52.77 Aligned_cols=23 Identities=52% Similarity=0.589 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 78999999999999999999874
No 480
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.12 E-value=0.017 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 481
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.10 E-value=0.016 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.|+++|++|||||||+|.+.|-.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCc
Confidence 77899999999999999998753
No 482
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.08 E-value=0.055 Score=55.59 Aligned_cols=50 Identities=20% Similarity=0.395 Sum_probs=34.5
Q ss_pred HHHHhccccEEEEEEe-CCCCC-ChhHHHHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 266 ATAAIEESCVIIFLVD-GQAGL-TAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 266 ~~~~l~~~d~ii~VvD-~~~~~-~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
++..+++++++ ++| ++..+ +..+.++++.+.....++-+|.|+..-|+..
T Consensus 499 aRa~lKda~Il--~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~ 550 (591)
T KOG0057|consen 499 ARAFLKDAPIL--LLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLK 550 (591)
T ss_pred HHHHhcCCCeE--EecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHh
Confidence 44556777665 445 33333 3445778888888777899999999988764
No 483
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.08 E-value=0.018 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 484
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.08 E-value=0.016 Score=51.11 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6799999999999999998764
No 485
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=95.04 E-value=0.027 Score=61.07 Aligned_cols=55 Identities=22% Similarity=0.348 Sum_probs=36.2
Q ss_pred EcCCCCChhHHHHHHhCCCcccccC--CCCcccccceeeEEe---CCceEEEEEcCCCCC
Q 016883 169 VGRPNVGKSALFNRLVGGNRAIVVD--EPGVTRDRMYGRSFW---GEHEFMLVDTGGVLN 223 (381)
Q Consensus 169 ~G~~gvGKSSLin~L~~~~~~~~~~--~~~tt~~~~~~~~~~---~~~~~~liDTPG~~~ 223 (381)
+|.-++|||||+|.|.|..+..... ...||...-...... ....+.++|+-|...
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~ 60 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDG 60 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCc
Confidence 4889999999999999997644433 223554432222211 234678999998764
No 486
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.017 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.|-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.03 E-value=0.02 Score=46.74 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 016883 165 RVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~ 184 (381)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 68999999999999999976
No 488
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.02 E-value=0.019 Score=51.30 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 489
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.02 E-value=0.019 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 490
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.02 E-value=0.027 Score=52.36 Aligned_cols=62 Identities=21% Similarity=0.230 Sum_probs=36.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCccccc---ceeeEEeCCceEEEEEcCCCCCccC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDR---MYGRSFWGEHEFMLVDTGGVLNVSK 226 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~---~~~~~~~~~~~~~liDTPG~~~~~~ 226 (381)
.++++|.+|+|||||.+.+.|-.....+....-.... ..........++.+=|-.|..+...
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~ 99 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR 99 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcch
Confidence 7899999999999999999987643222221000000 0000123345566777666655443
No 491
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.00 E-value=0.019 Score=52.53 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 492
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.98 E-value=0.018 Score=52.33 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..|+++|++|+|||||++.|.+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
No 493
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.97 E-value=0.015 Score=50.69 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=17.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999999854
No 494
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.96 E-value=0.02 Score=47.01 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHhCC
Q 016883 166 VAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~ 186 (381)
|++.|.+|+||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998765
No 495
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.95 E-value=0.02 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998864
No 496
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.02 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 497
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.95 E-value=0.021 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 498
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.94 E-value=0.021 Score=51.95 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 499
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.92 E-value=0.026 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+||||++..+....
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 4 VILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhcc
Confidence 78999999999999999998764
No 500
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.91 E-value=0.021 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
Done!