Query 016883
Match_columns 381
No_of_seqs 411 out of 3219
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 05:22:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dcu_A GTP-binding protein ENG 99.9 1.6E-26 5.6E-31 233.7 19.4 260 42-363 104-375 (456)
2 2hjg_A GTP-binding protein ENG 99.9 1.2E-26 4.1E-31 233.4 18.2 244 55-360 100-352 (436)
3 1mky_A Probable GTP-binding pr 99.9 6.6E-25 2.2E-29 220.9 16.0 250 55-359 99-357 (439)
4 2dyk_A GTP-binding protein; GT 99.9 2.7E-23 9.3E-28 178.1 17.4 158 164-355 2-160 (161)
5 2e87_A Hypothetical protein PH 99.9 6.3E-24 2.2E-28 208.2 14.1 256 54-359 74-338 (357)
6 4dhe_A Probable GTP-binding pr 99.9 6.8E-23 2.3E-27 186.0 17.3 178 155-359 21-213 (223)
7 1mky_A Probable GTP-binding pr 99.9 7.5E-23 2.6E-27 205.9 17.6 164 164-358 2-167 (439)
8 2gj8_A MNME, tRNA modification 99.9 7.9E-23 2.7E-27 179.2 15.3 161 164-357 5-166 (172)
9 1wf3_A GTP-binding protein; GT 99.9 8.7E-23 3E-27 195.7 16.8 164 164-357 8-173 (301)
10 3iev_A GTP-binding protein ERA 99.9 1.6E-22 5.6E-27 194.3 18.6 169 161-359 8-184 (308)
11 3pqc_A Probable GTP-binding pr 99.9 1.5E-21 5.1E-26 172.5 20.9 173 155-357 15-194 (195)
12 2lkc_A Translation initiation 99.9 3.1E-22 1.1E-26 174.5 16.0 157 162-359 7-173 (178)
13 1svi_A GTP-binding protein YSX 99.9 5.9E-22 2E-26 175.7 17.7 169 155-356 15-194 (195)
14 3gee_A MNME, tRNA modification 99.9 2.1E-22 7.1E-27 204.3 16.3 164 163-356 233-397 (476)
15 2qu8_A Putative nucleolar GTP- 99.9 7.9E-22 2.7E-26 180.5 18.3 170 161-360 27-208 (228)
16 3tw8_B RAS-related protein RAB 99.9 3.8E-22 1.3E-26 174.0 14.8 159 162-359 8-173 (181)
17 1xzp_A Probable tRNA modificat 99.9 1.2E-21 4E-26 199.0 17.7 159 164-356 244-404 (482)
18 3iby_A Ferrous iron transport 99.9 7.3E-22 2.5E-26 185.0 13.7 158 164-354 2-164 (256)
19 3geh_A MNME, tRNA modification 99.9 5E-22 1.7E-26 200.8 12.9 163 163-359 224-386 (462)
20 3q72_A GTP-binding protein RAD 99.9 1.1E-21 3.8E-26 169.0 13.3 154 163-357 2-164 (166)
21 2wji_A Ferrous iron transport 99.9 2.2E-21 7.6E-26 168.4 15.2 156 164-356 4-164 (165)
22 1zj6_A ADP-ribosylation factor 99.9 5.2E-21 1.8E-25 169.0 17.3 156 163-360 16-181 (187)
23 2hjg_A GTP-binding protein ENG 99.9 5.7E-22 2E-26 199.3 12.6 162 164-358 4-166 (436)
24 2g6b_A RAS-related protein RAB 99.9 2E-21 7E-26 169.6 14.5 158 163-358 10-175 (180)
25 1ksh_A ARF-like protein 2; sma 99.9 4E-21 1.4E-25 169.2 15.5 155 162-358 17-181 (186)
26 4bas_A ADP-ribosylation factor 99.9 2.4E-21 8.2E-26 172.1 14.2 162 159-360 13-192 (199)
27 2nzj_A GTP-binding protein REM 99.9 1.7E-21 5.7E-26 169.2 12.9 158 163-358 4-170 (175)
28 3tkl_A RAS-related protein RAB 99.9 5.9E-21 2E-25 169.2 16.7 160 162-360 15-182 (196)
29 1upt_A ARL1, ADP-ribosylation 99.9 8.3E-21 2.8E-25 164.1 17.2 153 163-357 7-169 (171)
30 2h17_A ADP-ribosylation factor 99.9 4.6E-21 1.6E-25 168.6 15.5 151 162-354 20-180 (181)
31 1u8z_A RAS-related protein RAL 99.9 2.9E-21 1E-25 165.8 13.8 155 163-357 4-167 (168)
32 3i8s_A Ferrous iron transport 99.9 1.5E-21 5.1E-26 184.6 13.0 163 163-358 3-170 (274)
33 3t5g_A GTP-binding protein RHE 99.9 2.9E-21 9.9E-26 169.2 13.6 157 163-359 6-171 (181)
34 1moz_A ARL1, ADP-ribosylation 99.9 5.9E-21 2E-25 167.3 15.5 154 162-357 17-180 (183)
35 1g16_A RAS-related protein SEC 99.9 4.3E-21 1.5E-25 165.5 14.3 157 163-358 3-166 (170)
36 2h57_A ADP-ribosylation factor 99.9 4.5E-21 1.5E-25 169.8 14.6 157 162-358 20-188 (190)
37 1z0j_A RAB-22, RAS-related pro 99.9 2.8E-21 9.7E-26 166.7 12.9 154 163-356 6-168 (170)
38 2fn4_A P23, RAS-related protei 99.9 5.1E-21 1.7E-25 166.8 14.6 159 161-359 7-174 (181)
39 1r8s_A ADP-ribosylation factor 99.9 9E-21 3.1E-25 163.0 15.9 152 164-357 1-162 (164)
40 4dsu_A GTPase KRAS, isoform 2B 99.9 5.6E-21 1.9E-25 167.9 14.8 157 163-359 4-168 (189)
41 3clv_A RAB5 protein, putative; 99.9 1.4E-20 4.6E-25 166.8 17.2 156 162-357 6-204 (208)
42 2bov_A RAla, RAS-related prote 99.9 7.8E-21 2.7E-25 169.7 15.5 157 162-358 13-178 (206)
43 1kao_A RAP2A; GTP-binding prot 99.9 3.9E-21 1.3E-25 164.9 13.0 154 164-357 4-166 (167)
44 2gf9_A RAS-related protein RAB 99.9 4.2E-21 1.4E-25 169.9 13.4 158 162-358 21-186 (189)
45 1c1y_A RAS-related protein RAP 99.9 8E-21 2.7E-25 163.4 14.7 153 164-356 4-166 (167)
46 2a9k_A RAS-related protein RAL 99.9 7.1E-21 2.4E-25 166.7 14.5 156 163-358 18-182 (187)
47 2atx_A Small GTP binding prote 99.9 5.5E-21 1.9E-25 169.6 13.9 155 162-356 17-192 (194)
48 2fg5_A RAB-22B, RAS-related pr 99.9 4.4E-21 1.5E-25 170.5 13.3 158 163-358 23-187 (192)
49 1f6b_A SAR1; gtpases, N-termin 99.9 7.3E-21 2.5E-25 170.5 14.7 151 163-355 25-197 (198)
50 2efe_B Small GTP-binding prote 99.9 5.3E-21 1.8E-25 167.1 13.4 158 163-359 12-177 (181)
51 1fzq_A ADP-ribosylation factor 99.9 8E-21 2.8E-25 167.5 14.7 154 162-357 15-178 (181)
52 1z08_A RAS-related protein RAB 99.9 4.4E-21 1.5E-25 165.7 12.7 156 163-357 6-169 (170)
53 1z2a_A RAS-related protein RAB 99.9 5.4E-21 1.8E-25 164.6 13.1 155 163-356 5-166 (168)
54 1z0f_A RAB14, member RAS oncog 99.8 5.6E-21 1.9E-25 166.2 13.1 155 162-356 14-177 (179)
55 3reg_A RHO-like small GTPase; 99.8 6.7E-21 2.3E-25 169.3 13.8 157 163-359 23-190 (194)
56 2x77_A ADP-ribosylation factor 99.8 2.2E-20 7.7E-25 165.0 17.1 155 162-358 21-185 (189)
57 1r2q_A RAS-related protein RAB 99.8 7E-21 2.4E-25 164.0 13.5 155 163-357 6-169 (170)
58 3a1s_A Iron(II) transport prot 99.8 7.6E-21 2.6E-25 178.2 14.7 157 163-356 5-166 (258)
59 3bc1_A RAS-related protein RAB 99.8 8.7E-21 3E-25 167.1 14.2 158 162-358 10-186 (195)
60 3q85_A GTP-binding protein REM 99.8 9.4E-21 3.2E-25 163.7 14.1 157 163-357 2-167 (169)
61 2bcg_Y Protein YP2, GTP-bindin 99.8 2.2E-20 7.5E-25 167.5 16.8 158 163-359 8-173 (206)
62 2b6h_A ADP-ribosylation factor 99.8 2E-20 6.7E-25 166.7 16.4 156 160-357 26-191 (192)
63 1m2o_B GTP-binding protein SAR 99.8 1.6E-20 5.4E-25 167.1 15.6 150 163-354 23-189 (190)
64 2a5j_A RAS-related protein RAB 99.8 1.2E-20 4.2E-25 167.3 14.7 159 162-359 20-186 (191)
65 2q3h_A RAS homolog gene family 99.8 1.1E-20 3.9E-25 168.6 14.5 157 162-358 19-196 (201)
66 3bwd_D RAC-like GTP-binding pr 99.8 4E-21 1.4E-25 168.0 11.2 156 161-356 6-180 (182)
67 1ek0_A Protein (GTP-binding pr 99.8 1.1E-20 3.8E-25 162.7 13.9 154 164-356 4-168 (170)
68 1zd9_A ADP-ribosylation factor 99.8 1.1E-20 3.7E-25 167.4 14.1 154 163-357 22-185 (188)
69 2il1_A RAB12; G-protein, GDP, 99.8 7.8E-21 2.7E-25 169.0 13.2 157 162-357 25-190 (192)
70 3gj0_A GTP-binding nuclear pro 99.8 2.5E-21 8.6E-26 175.9 10.2 161 161-359 13-177 (221)
71 2y8e_A RAB-protein 6, GH09086P 99.8 9.2E-21 3.1E-25 164.9 13.3 156 163-357 14-177 (179)
72 2ce2_X GTPase HRAS; signaling 99.8 3.6E-20 1.2E-24 158.4 16.8 154 164-357 4-165 (166)
73 3cph_A RAS-related protein SEC 99.8 1.6E-20 5.6E-25 168.6 15.3 159 162-359 19-184 (213)
74 2hxs_A RAB-26, RAS-related pro 99.8 6.1E-21 2.1E-25 166.3 12.0 158 163-359 6-175 (178)
75 2bme_A RAB4A, RAS-related prot 99.8 1.1E-20 3.9E-25 165.9 13.7 159 163-360 10-176 (186)
76 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.2E-20 4E-25 164.3 13.5 156 163-357 7-174 (177)
77 3qq5_A Small GTP-binding prote 99.8 4.1E-21 1.4E-25 191.9 11.9 165 159-358 30-197 (423)
78 3kkq_A RAS-related protein M-R 99.8 3E-20 1E-24 163.0 15.8 156 162-357 17-182 (183)
79 3oes_A GTPase rhebl1; small GT 99.8 6.1E-21 2.1E-25 170.8 11.3 163 159-361 20-191 (201)
80 2oil_A CATX-8, RAS-related pro 99.8 1.4E-20 4.7E-25 166.9 13.5 156 163-357 25-188 (193)
81 3t1o_A Gliding protein MGLA; G 99.8 6.3E-21 2.2E-25 168.6 11.1 159 163-359 14-194 (198)
82 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.5E-20 5.1E-25 164.7 13.3 156 163-358 5-181 (186)
83 2erx_A GTP-binding protein DI- 99.8 9.1E-21 3.1E-25 163.6 11.8 156 163-358 3-168 (172)
84 3b1v_A Ferrous iron uptake tra 99.8 1.2E-20 4.3E-25 178.2 13.6 157 163-357 3-164 (272)
85 4gzl_A RAS-related C3 botulinu 99.8 1.1E-20 3.6E-25 170.1 12.5 153 163-355 30-203 (204)
86 2j0v_A RAC-like GTP-binding pr 99.8 1.4E-20 4.7E-25 169.6 13.3 158 162-359 8-182 (212)
87 1x3s_A RAS-related protein RAB 99.8 1.8E-20 6E-25 165.7 13.7 158 163-359 15-180 (195)
88 1vg8_A RAS-related protein RAB 99.8 2.2E-20 7.5E-25 167.1 14.5 158 163-359 8-177 (207)
89 2fu5_C RAS-related protein RAB 99.8 5.4E-21 1.9E-25 167.7 10.2 156 163-357 8-171 (183)
90 1zbd_A Rabphilin-3A; G protein 99.8 1.4E-20 4.9E-25 168.1 13.1 157 163-358 8-172 (203)
91 4dkx_A RAS-related protein RAB 99.8 1.7E-20 5.9E-25 171.3 13.8 158 162-359 12-178 (216)
92 3con_A GTPase NRAS; structural 99.8 3.2E-20 1.1E-24 163.9 15.1 157 163-359 21-185 (190)
93 4dcu_A GTP-binding protein ENG 99.8 8.8E-21 3E-25 191.7 12.9 162 163-357 23-185 (456)
94 2hup_A RAS-related protein RAB 99.8 1.7E-20 5.8E-25 168.3 13.2 158 163-359 29-195 (201)
95 1ky3_A GTP-binding protein YPT 99.8 1.5E-20 5.1E-25 164.0 12.3 157 162-357 7-178 (182)
96 2j1l_A RHO-related GTP-binding 99.8 2.2E-20 7.5E-25 169.2 13.8 156 163-358 34-210 (214)
97 2p5s_A RAS and EF-hand domain 99.8 1.1E-20 3.8E-25 168.8 11.6 158 160-357 25-197 (199)
98 2wjg_A FEOB, ferrous iron tran 99.8 2.7E-20 9.4E-25 163.9 13.9 160 163-359 7-171 (188)
99 2o52_A RAS-related protein RAB 99.8 2.1E-20 7.1E-25 167.5 13.2 158 163-359 25-190 (200)
100 2xtp_A GTPase IMAP family memb 99.8 2.3E-20 7.8E-25 174.2 13.6 169 162-358 21-209 (260)
101 3cbq_A GTP-binding protein REM 99.8 4.4E-20 1.5E-24 165.0 14.9 161 161-359 21-190 (195)
102 3k53_A Ferrous iron transport 99.8 5.3E-20 1.8E-24 173.3 16.0 160 163-359 3-168 (271)
103 2ew1_A RAS-related protein RAB 99.8 3E-20 1E-24 167.3 13.2 157 163-358 26-190 (201)
104 1z06_A RAS-related protein RAB 99.8 2.9E-20 1E-24 164.4 12.8 158 162-357 19-188 (189)
105 2gco_A H9, RHO-related GTP-bin 99.8 5.1E-20 1.7E-24 164.9 14.5 154 163-356 25-199 (201)
106 3dz8_A RAS-related protein RAB 99.8 5.4E-21 1.8E-25 169.6 7.9 160 162-359 22-188 (191)
107 1ega_A Protein (GTP-binding pr 99.8 4.4E-20 1.5E-24 176.8 14.7 162 164-358 9-176 (301)
108 4djt_A GTP-binding nuclear pro 99.8 2.2E-20 7.4E-25 169.0 11.8 157 163-359 11-177 (218)
109 2iwr_A Centaurin gamma 1; ANK 99.8 6.9E-20 2.3E-24 159.9 14.1 150 163-358 7-170 (178)
110 2atv_A RERG, RAS-like estrogen 99.8 3.6E-20 1.2E-24 165.0 12.5 156 161-357 26-191 (196)
111 2fv8_A H6, RHO-related GTP-bin 99.8 5.9E-20 2E-24 165.3 13.9 156 163-358 25-201 (207)
112 3cpj_B GTP-binding protein YPT 99.8 6.2E-20 2.1E-24 167.2 14.1 159 163-360 13-179 (223)
113 2qtf_A Protein HFLX, GTP-bindi 99.8 2E-19 6.9E-24 176.6 18.3 167 162-359 178-356 (364)
114 3q3j_B RHO-related GTP-binding 99.8 5.6E-20 1.9E-24 166.8 12.9 158 162-359 26-205 (214)
115 2gf0_A GTP-binding protein DI- 99.8 5.2E-20 1.8E-24 163.4 12.3 158 162-359 7-173 (199)
116 3c5c_A RAS-like protein 12; GD 99.8 7.5E-20 2.6E-24 162.1 13.1 155 162-357 20-186 (187)
117 3llu_A RAS-related GTP-binding 99.8 2.8E-19 9.5E-24 159.5 16.3 159 159-355 16-195 (196)
118 2yc2_C IFT27, small RAB-relate 99.8 1.5E-20 5.2E-25 167.9 7.9 158 163-358 20-193 (208)
119 2f7s_A C25KG, RAS-related prot 99.8 2E-20 6.7E-25 169.2 8.6 157 163-358 25-200 (217)
120 1lnz_A SPO0B-associated GTP-bi 99.8 3.7E-20 1.3E-24 180.3 10.9 165 163-360 158-333 (342)
121 3l0i_B RAS-related protein RAB 99.8 4.4E-21 1.5E-25 171.5 2.7 157 162-357 32-196 (199)
122 2cxx_A Probable GTP-binding pr 99.8 1.3E-18 4.4E-23 153.0 18.2 166 164-359 2-186 (190)
123 3ihw_A Centg3; RAS, centaurin, 99.8 4.3E-19 1.5E-23 157.0 15.2 152 161-358 18-181 (184)
124 1m7b_A RND3/RHOE small GTP-bin 99.8 1.4E-19 4.7E-24 159.6 11.9 154 163-356 7-182 (184)
125 2fh5_B SR-beta, signal recogni 99.8 2E-19 6.7E-24 162.2 13.0 150 163-354 7-213 (214)
126 3o47_A ADP-ribosylation factor 99.8 7.2E-19 2.5E-23 170.4 16.9 154 162-357 164-327 (329)
127 2g3y_A GTP-binding protein GEM 99.8 2.9E-19 9.9E-24 162.5 12.6 159 163-358 37-204 (211)
128 3t5d_A Septin-7; GTP-binding p 99.8 2.5E-19 8.7E-24 169.0 12.5 170 163-359 8-206 (274)
129 1gwn_A RHO-related GTP-binding 99.8 2.6E-19 8.9E-24 161.5 11.7 154 163-356 28-203 (205)
130 2cjw_A GTP-binding protein GEM 99.8 5.5E-19 1.9E-23 157.6 13.2 160 163-359 6-174 (192)
131 3lxx_A GTPase IMAP family memb 99.8 1.4E-18 4.8E-23 160.2 15.4 169 161-358 27-215 (239)
132 3th5_A RAS-related C3 botulinu 99.7 7.8E-21 2.7E-25 170.3 0.0 154 162-355 29-203 (204)
133 3izy_P Translation initiation 99.8 4.7E-20 1.6E-24 189.0 5.7 154 163-357 4-168 (537)
134 2zej_A Dardarin, leucine-rich 99.8 4.7E-19 1.6E-23 156.4 10.9 159 163-359 2-180 (184)
135 1wb1_A Translation elongation 99.8 5.6E-19 1.9E-23 179.7 12.6 154 163-356 19-188 (482)
136 3j2k_7 ERF3, eukaryotic polype 99.8 1E-18 3.4E-23 175.8 14.3 150 160-349 14-217 (439)
137 3lvq_E ARF-GAP with SH3 domain 99.8 1.5E-18 5E-23 177.0 15.7 157 163-361 322-488 (497)
138 2wkq_A NPH1-1, RAS-related C3 99.8 9.3E-19 3.2E-23 167.9 13.2 155 163-357 155-330 (332)
139 3r7w_A Gtpase1, GTP-binding pr 99.8 1.7E-18 5.9E-23 166.1 14.6 159 164-356 4-180 (307)
140 1zo1_I IF2, translation initia 99.8 2.1E-19 7E-24 182.8 7.8 152 162-354 3-164 (501)
141 3lxw_A GTPase IMAP family memb 99.8 3.2E-18 1.1E-22 159.2 15.2 170 162-358 20-209 (247)
142 3sjy_A Translation initiation 99.8 1.9E-18 6.4E-23 172.0 14.1 159 161-358 6-193 (403)
143 3tr5_A RF-3, peptide chain rel 99.8 6.4E-19 2.2E-23 180.9 10.8 115 164-318 14-149 (528)
144 2aka_B Dynamin-1; fusion prote 99.8 2.6E-18 8.9E-23 163.0 13.3 167 161-356 24-252 (299)
145 1s0u_A EIF-2-gamma, translatio 99.7 9.5E-18 3.2E-22 167.1 14.9 157 162-357 7-198 (408)
146 1kk1_A EIF2gamma; initiation o 99.7 9E-18 3.1E-22 167.4 13.6 156 163-357 10-200 (410)
147 2elf_A Protein translation elo 99.7 9.5E-18 3.3E-22 165.1 13.4 143 165-358 23-181 (370)
148 1g7s_A Translation initiation 99.7 1.5E-17 5.1E-22 172.8 15.2 153 163-357 5-218 (594)
149 3cb4_D GTP-binding protein LEP 99.7 1.4E-17 4.7E-22 173.0 14.6 157 163-359 4-184 (599)
150 2ywe_A GTP-binding protein LEP 99.7 1E-17 3.5E-22 173.7 13.3 157 163-359 6-186 (600)
151 3p26_A Elongation factor 1 alp 99.7 7.7E-18 2.6E-22 171.4 11.9 145 163-346 33-227 (483)
152 2c78_A Elongation factor TU-A; 99.7 6E-18 2.1E-22 168.4 9.6 155 163-357 11-212 (405)
153 1zun_B Sulfate adenylate trans 99.7 1.7E-17 6E-22 166.5 12.6 145 163-347 24-214 (434)
154 1jwy_B Dynamin A GTPase domain 99.7 1E-16 3.4E-21 153.4 16.2 171 162-359 23-264 (315)
155 3dpu_A RAB family protein; roc 99.7 2E-17 6.9E-22 170.3 11.9 155 162-359 40-210 (535)
156 1d2e_A Elongation factor TU (E 99.7 1.1E-17 3.7E-22 166.2 9.2 154 164-357 4-195 (397)
157 2f9l_A RAB11B, member RAS onco 99.7 1.3E-16 4.6E-21 142.3 15.3 157 163-358 5-169 (199)
158 2j69_A Bacterial dynamin-like 99.7 1.7E-17 5.9E-22 175.6 10.4 160 163-359 69-327 (695)
159 3izq_1 HBS1P, elongation facto 99.7 1.5E-17 5.1E-22 173.6 9.3 147 161-347 165-362 (611)
160 3c5h_A Glucocorticoid receptor 99.7 3.9E-17 1.3E-21 152.4 11.2 85 272-356 162-254 (255)
161 3mca_A HBS1, elongation factor 99.7 1.6E-18 5.5E-23 180.3 0.4 156 161-356 175-396 (592)
162 4a9a_A Ribosome-interacting GT 99.7 1.5E-16 5.1E-21 156.3 14.1 126 157-315 66-194 (376)
163 1h65_A Chloroplast outer envel 99.7 2.2E-16 7.4E-21 148.4 14.0 126 163-319 39-170 (270)
164 1pui_A ENGB, probable GTP-bind 99.7 5E-16 1.7E-20 139.2 15.4 170 159-358 22-200 (210)
165 1jny_A EF-1-alpha, elongation 99.7 2.6E-17 9E-22 165.3 6.9 145 163-347 6-203 (435)
166 1oix_A RAS-related protein RAB 99.7 7.1E-16 2.4E-20 137.0 15.3 154 163-355 29-190 (191)
167 1wxq_A GTP-binding protein; st 99.7 1.1E-17 3.9E-22 165.9 3.9 89 165-285 2-114 (397)
168 2h5e_A Peptide chain release f 99.7 4.6E-16 1.6E-20 159.7 15.7 115 164-318 14-149 (529)
169 3def_A T7I23.11 protein; chlor 99.7 4E-16 1.4E-20 146.0 14.0 124 163-317 36-165 (262)
170 3r7w_B Gtpase2, GTP-binding pr 99.7 3.8E-16 1.3E-20 150.3 14.1 156 165-357 1-174 (331)
171 3ec1_A YQEH GTPase; atnos1, at 99.7 1.5E-18 5.1E-23 170.8 -3.1 218 54-346 88-320 (369)
172 1f60_A Elongation factor EEF1A 99.7 2.5E-17 8.7E-22 166.4 5.3 145 163-347 7-202 (458)
173 3avx_A Elongation factor TS, e 99.7 2.1E-16 7.3E-21 171.9 11.4 156 162-357 295-486 (1289)
174 2xex_A Elongation factor G; GT 99.7 7.3E-16 2.5E-20 163.1 15.2 118 161-318 8-142 (693)
175 1nrj_B SR-beta, signal recogni 99.6 2.6E-16 9E-21 142.0 9.5 142 161-343 10-170 (218)
176 1r5b_A Eukaryotic peptide chai 99.6 2.4E-16 8.2E-21 159.7 10.1 146 163-348 43-243 (467)
177 2x2e_A Dynamin-1; nitration, h 99.6 1.1E-15 3.8E-20 149.2 14.1 163 163-354 31-255 (353)
178 1dar_A EF-G, elongation factor 99.6 5.8E-16 2E-20 163.8 13.0 116 163-318 12-144 (691)
179 3vqt_A RF-3, peptide chain rel 99.6 9.2E-16 3.2E-20 158.1 14.0 113 165-317 33-166 (548)
180 3h2y_A GTPase family protein; 99.6 1.9E-18 6.6E-23 169.9 -6.9 212 63-344 91-317 (368)
181 2rdo_7 EF-G, elongation factor 99.6 2.8E-15 9.7E-20 158.8 16.6 116 162-317 9-148 (704)
182 2dy1_A Elongation factor G; tr 99.6 2.4E-15 8.1E-20 158.5 15.3 114 163-316 9-139 (665)
183 1udx_A The GTP-binding protein 99.6 3.6E-15 1.2E-19 148.6 15.4 164 164-360 158-328 (416)
184 2www_A Methylmalonic aciduria 99.6 8.7E-16 3E-20 149.9 10.4 149 163-358 74-280 (349)
185 3p32_A Probable GTPase RV1496/ 99.6 6.8E-16 2.3E-20 150.9 9.2 85 269-359 189-286 (355)
186 2qag_A Septin-2, protein NEDD5 99.6 7.9E-16 2.7E-20 150.9 9.6 166 163-356 37-232 (361)
187 3zvr_A Dynamin-1; hydrolase, D 99.6 8E-15 2.7E-19 155.1 16.1 161 163-353 51-274 (772)
188 3t34_A Dynamin-related protein 99.6 6.8E-15 2.3E-19 144.0 12.9 162 162-351 33-255 (360)
189 3j25_A Tetracycline resistance 99.6 3.2E-15 1.1E-19 156.8 8.0 156 164-359 3-241 (638)
190 2ged_A SR-beta, signal recogni 99.5 1.3E-14 4.5E-19 128.0 9.1 117 162-319 47-172 (193)
191 1jal_A YCHF protein; nucleotid 99.5 6.6E-14 2.2E-18 136.8 13.4 89 164-284 3-108 (363)
192 1puj_A YLQF, conserved hypothe 99.5 5E-15 1.7E-19 140.4 4.7 140 55-226 41-180 (282)
193 2p67_A LAO/AO transport system 99.5 1.9E-14 6.4E-19 140.0 8.5 149 163-358 56-262 (341)
194 1yrb_A ATP(GTP)binding protein 99.5 5.9E-14 2E-18 130.3 11.3 163 162-359 13-259 (262)
195 2qpt_A EH domain-containing pr 99.5 1.1E-13 3.9E-18 142.6 13.3 131 160-319 62-234 (550)
196 2wsm_A Hydrogenase expression/ 99.5 1.3E-14 4.6E-19 131.1 5.3 82 272-359 129-216 (221)
197 2dby_A GTP-binding protein; GD 99.5 3.1E-13 1.1E-17 132.5 14.1 89 164-284 2-111 (368)
198 4fn5_A EF-G 1, elongation fact 99.5 2.3E-13 8E-18 144.4 13.7 115 163-317 13-151 (709)
199 1n0u_A EF-2, elongation factor 99.4 9.3E-14 3.2E-18 149.9 8.1 113 164-316 20-163 (842)
200 2qag_C Septin-7; cell cycle, c 99.4 3.4E-13 1.2E-17 134.4 11.4 167 163-357 31-227 (418)
201 2qm8_A GTPase/ATPase; G protei 99.4 8.9E-14 3.1E-18 135.0 6.3 149 163-358 55-262 (337)
202 2qnr_A Septin-2, protein NEDD5 99.4 5.4E-13 1.8E-17 127.5 10.5 168 163-357 18-214 (301)
203 1t9h_A YLOQ, probable GTPase E 99.4 1.6E-14 5.6E-19 138.2 -0.8 148 35-225 83-238 (307)
204 3cnl_A YLQF, putative uncharac 99.4 5.3E-14 1.8E-18 131.9 0.5 113 68-225 46-158 (262)
205 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 5.2E-11 1.8E-15 117.6 14.8 64 163-226 20-100 (392)
206 2hf9_A Probable hydrogenase ni 99.3 8.6E-12 2.9E-16 112.9 8.4 55 303-357 164-224 (226)
207 2rcn_A Probable GTPase ENGC; Y 99.3 3.1E-13 1.1E-17 131.8 -1.5 138 43-224 135-281 (358)
208 2yv5_A YJEQ protein; hydrolase 99.3 8E-13 2.7E-17 126.4 1.1 145 35-223 76-228 (302)
209 2j37_W Signal recognition part 99.1 1.1E-10 3.7E-15 118.8 9.1 156 162-354 100-310 (504)
210 2ohf_A Protein OLA1, GTP-bindi 99.1 1.8E-10 6.2E-15 113.6 8.0 90 163-284 22-128 (396)
211 1u0l_A Probable GTPase ENGC; p 99.1 3.4E-11 1.2E-15 114.9 2.4 145 36-224 82-234 (301)
212 2qag_B Septin-6, protein NEDD5 99.0 6.7E-10 2.3E-14 110.5 11.1 148 164-338 43-217 (427)
213 3ohm_A Guanine nucleotide-bind 99.0 3.3E-10 1.1E-14 109.2 8.4 115 205-357 161-318 (327)
214 1tq4_A IIGP1, interferon-induc 99.0 2E-09 6.8E-14 106.9 13.9 157 164-359 70-255 (413)
215 3sop_A Neuronal-specific septi 99.0 1E-09 3.4E-14 103.2 10.3 132 164-320 3-157 (270)
216 4fid_A G protein alpha subunit 99.0 2.5E-10 8.6E-15 110.5 6.2 115 205-357 155-328 (340)
217 1cip_A Protein (guanine nucleo 99.0 6.4E-10 2.2E-14 108.4 6.7 118 202-357 184-344 (353)
218 1zcb_A G alpha I/13; GTP-bindi 98.9 1.1E-09 3.8E-14 107.0 7.6 117 203-357 193-353 (362)
219 1u0l_A Probable GTPase ENGC; p 98.9 9.6E-09 3.3E-13 97.8 11.1 85 268-354 80-170 (301)
220 3dm5_A SRP54, signal recogniti 98.8 3.5E-08 1.2E-12 98.5 14.1 146 163-346 100-280 (443)
221 1f5n_A Interferon-induced guan 98.8 1.1E-08 3.6E-13 105.8 9.8 61 163-225 38-105 (592)
222 2v3c_C SRP54, signal recogniti 98.8 3.3E-09 1.1E-13 106.0 5.4 158 163-357 99-311 (432)
223 1azs_C GS-alpha; complex (lyas 98.8 6.5E-09 2.2E-13 102.8 6.5 116 204-357 210-385 (402)
224 2xtz_A Guanine nucleotide-bind 98.7 7.9E-09 2.7E-13 100.7 5.4 110 210-357 182-345 (354)
225 3l82_B F-box only protein 4; T 98.7 2.4E-07 8.4E-12 83.2 12.8 93 265-357 118-223 (227)
226 3kl4_A SRP54, signal recogniti 98.6 1.8E-07 6.2E-12 93.3 10.1 68 272-345 211-278 (433)
227 1puj_A YLQF, conserved hypothe 98.6 2E-07 6.7E-12 88.0 9.5 90 264-357 15-106 (282)
228 2yv5_A YJEQ protein; hydrolase 98.5 1.4E-07 4.7E-12 89.9 7.7 85 269-355 76-167 (302)
229 1j8m_F SRP54, signal recogniti 98.5 8.7E-07 3E-11 84.2 12.3 71 270-347 210-281 (297)
230 3h2y_A GTPase family protein; 98.3 1.4E-06 4.6E-11 85.3 9.3 86 267-356 64-159 (368)
231 3szr_A Interferon-induced GTP- 98.3 4.3E-06 1.5E-10 87.1 12.6 25 163-187 45-69 (608)
232 3cnl_A YLQF, putative uncharac 98.2 6.2E-07 2.1E-11 83.6 4.8 84 264-354 13-98 (262)
233 3e70_C DPA, signal recognition 98.2 1.6E-06 5.4E-11 83.5 6.7 70 272-347 241-310 (328)
234 3ec1_A YQEH GTPase; atnos1, at 98.2 2.5E-06 8.4E-11 83.5 7.7 86 268-357 67-162 (369)
235 3l2o_B F-box only protein 4; s 98.2 4.5E-06 1.5E-10 78.5 8.9 93 265-357 203-308 (312)
236 2xxa_A Signal recognition part 98.2 1.5E-05 5.2E-10 79.5 13.3 23 162-184 99-121 (433)
237 1rj9_A FTSY, signal recognitio 97.9 0.00013 4.4E-09 69.3 13.8 72 270-347 218-289 (304)
238 1vma_A Cell division protein F 97.9 2.8E-05 9.5E-10 74.1 7.9 70 272-347 222-291 (306)
239 3q5d_A Atlastin-1; G protein, 97.8 1.7E-05 5.8E-10 79.3 6.1 61 163-224 67-153 (447)
240 2yhs_A FTSY, cell division pro 97.8 2.5E-05 8.7E-10 78.8 6.9 68 273-347 412-480 (503)
241 1t9h_A YLOQ, probable GTPase E 97.8 1.1E-05 3.7E-10 76.9 3.3 82 269-351 83-171 (307)
242 2ffh_A Protein (FFH); SRP54, s 97.8 5.6E-05 1.9E-09 75.1 8.5 70 271-346 209-278 (425)
243 1zu4_A FTSY; GTPase, signal re 97.8 0.00017 5.7E-09 69.1 11.5 69 272-347 227-296 (320)
244 2px0_A Flagellar biosynthesis 97.6 0.0001 3.5E-09 69.7 8.0 23 163-185 105-127 (296)
245 1ls1_A Signal recognition part 97.6 7.6E-05 2.6E-09 70.6 6.8 69 272-346 210-278 (295)
246 2rcn_A Probable GTPase ENGC; Y 97.5 0.00025 8.6E-09 68.8 9.4 78 270-351 128-213 (358)
247 3ney_A 55 kDa erythrocyte memb 97.3 4.4E-05 1.5E-09 68.0 0.9 61 160-222 16-77 (197)
248 4dzz_A Plasmid partitioning pr 97.2 0.002 7E-08 56.3 10.0 51 266-317 91-144 (206)
249 2og2_A Putative signal recogni 97.0 0.0065 2.2E-07 58.9 12.6 24 163-186 157-180 (359)
250 3b9q_A Chloroplast SRP recepto 96.9 0.0045 1.5E-07 58.6 10.6 24 163-186 100-123 (302)
251 1kgd_A CASK, peripheral plasma 96.5 0.00093 3.2E-08 57.9 2.4 22 165-186 7-28 (180)
252 1ex7_A Guanylate kinase; subst 96.4 0.00077 2.6E-08 59.3 1.4 38 166-203 4-42 (186)
253 4ido_A Atlastin-1; GTPase, GTP 96.3 0.009 3.1E-07 59.5 8.4 22 163-184 67-88 (457)
254 1lvg_A Guanylate kinase, GMP k 96.1 0.0021 7.3E-08 56.6 2.3 22 165-186 6-27 (198)
255 1ye8_A Protein THEP1, hypothet 96.1 0.0028 9.4E-08 55.2 2.8 23 165-187 2-24 (178)
256 3cwq_A Para family chromosome 95.9 0.0042 1.4E-07 55.2 3.3 50 267-317 85-134 (209)
257 3tau_A Guanylate kinase, GMP k 95.9 0.0049 1.7E-07 54.6 3.8 24 164-187 9-32 (208)
258 1bif_A 6-phosphofructo-2-kinas 95.9 0.00088 3E-08 67.3 -1.4 24 163-186 39-62 (469)
259 1znw_A Guanylate kinase, GMP k 95.9 0.0036 1.2E-07 55.4 2.7 23 165-187 22-44 (207)
260 3a00_A Guanylate kinase, GMP k 95.8 0.0035 1.2E-07 54.4 2.4 23 165-187 3-25 (186)
261 3tr0_A Guanylate kinase, GMP k 95.8 0.0041 1.4E-07 54.3 2.6 22 165-186 9-30 (205)
262 3end_A Light-independent proto 95.7 0.038 1.3E-06 51.6 9.5 47 269-315 176-225 (307)
263 1z6g_A Guanylate kinase; struc 95.7 0.0041 1.4E-07 55.7 2.5 22 165-186 25-46 (218)
264 1zp6_A Hypothetical protein AT 95.7 0.0055 1.9E-07 52.9 3.2 22 165-186 11-32 (191)
265 1s96_A Guanylate kinase, GMP k 95.7 0.0042 1.4E-07 55.9 2.4 23 165-187 18-40 (219)
266 3tif_A Uncharacterized ABC tra 95.6 0.0058 2E-07 55.5 3.2 23 165-187 33-55 (235)
267 2pcj_A ABC transporter, lipopr 95.6 0.0062 2.1E-07 54.9 3.1 23 165-187 32-54 (224)
268 3c8u_A Fructokinase; YP_612366 95.5 0.0054 1.9E-07 54.2 2.5 24 164-187 23-46 (208)
269 4gp7_A Metallophosphoesterase; 95.4 0.0079 2.7E-07 51.5 3.0 21 165-185 11-31 (171)
270 2cbz_A Multidrug resistance-as 95.4 0.0081 2.8E-07 54.6 3.2 23 165-187 33-55 (237)
271 2onk_A Molybdate/tungstate ABC 95.4 0.0082 2.8E-07 54.8 3.3 23 165-187 26-48 (240)
272 1b0u_A Histidine permease; ABC 95.3 0.0084 2.9E-07 55.4 3.2 23 165-187 34-56 (262)
273 1g6h_A High-affinity branched- 95.3 0.0087 3E-07 55.1 3.2 23 165-187 35-57 (257)
274 3gfo_A Cobalt import ATP-bindi 95.3 0.0085 2.9E-07 55.8 3.2 23 165-187 36-58 (275)
275 1mv5_A LMRA, multidrug resista 95.3 0.0087 3E-07 54.6 3.2 23 165-187 30-52 (243)
276 4g1u_C Hemin import ATP-bindin 95.3 0.0086 3E-07 55.5 3.2 23 165-187 39-61 (266)
277 2ff7_A Alpha-hemolysin translo 95.3 0.0088 3E-07 54.8 3.2 23 165-187 37-59 (247)
278 1htw_A HI0065; nucleotide-bind 95.3 0.0082 2.8E-07 51.1 2.7 23 165-187 35-57 (158)
279 2pze_A Cystic fibrosis transme 95.2 0.0094 3.2E-07 53.9 3.2 23 165-187 36-58 (229)
280 1sgw_A Putative ABC transporte 95.2 0.0089 3E-07 53.6 3.0 23 165-187 37-59 (214)
281 3asz_A Uridine kinase; cytidin 95.2 0.008 2.7E-07 52.9 2.6 23 164-186 7-29 (211)
282 1ji0_A ABC transporter; ATP bi 95.2 0.0098 3.3E-07 54.2 3.2 23 165-187 34-56 (240)
283 2olj_A Amino acid ABC transpor 95.2 0.0098 3.4E-07 55.0 3.2 23 165-187 52-74 (263)
284 2d2e_A SUFC protein; ABC-ATPas 95.2 0.01 3.6E-07 54.3 3.3 22 165-186 31-52 (250)
285 2ghi_A Transport protein; mult 95.1 0.01 3.6E-07 54.7 3.2 23 165-187 48-70 (260)
286 1vpl_A ABC transporter, ATP-bi 95.1 0.01 3.6E-07 54.6 3.2 23 165-187 43-65 (256)
287 2qi9_C Vitamin B12 import ATP- 95.1 0.011 3.6E-07 54.4 3.2 23 165-187 28-50 (249)
288 2qor_A Guanylate kinase; phosp 95.1 0.011 3.8E-07 51.9 3.2 23 164-186 13-35 (204)
289 2j41_A Guanylate kinase; GMP, 95.1 0.012 3.9E-07 51.4 3.3 23 165-187 8-30 (207)
290 2zu0_C Probable ATP-dependent 95.1 0.011 3.7E-07 54.8 3.3 22 165-186 48-69 (267)
291 2ixe_A Antigen peptide transpo 95.1 0.011 3.7E-07 55.0 3.2 23 165-187 47-69 (271)
292 3b85_A Phosphate starvation-in 95.1 0.0087 3E-07 53.4 2.4 22 165-186 24-45 (208)
293 1np6_A Molybdopterin-guanine d 95.1 0.011 3.7E-07 51.2 2.9 24 163-186 6-29 (174)
294 2ihy_A ABC transporter, ATP-bi 95.1 0.011 3.8E-07 55.2 3.2 23 165-187 49-71 (279)
295 3kjh_A CO dehydrogenase/acetyl 95.0 0.018 6.2E-07 51.5 4.5 46 268-314 149-194 (254)
296 1kag_A SKI, shikimate kinase I 95.0 0.01 3.5E-07 50.3 2.6 22 165-186 6-27 (173)
297 4eun_A Thermoresistant glucoki 95.0 0.012 4.1E-07 51.6 3.1 24 163-186 29-52 (200)
298 2yz2_A Putative ABC transporte 95.0 0.012 4.1E-07 54.5 3.2 23 165-187 35-57 (266)
299 2bdt_A BH3686; alpha-beta prot 95.0 0.011 3.8E-07 51.1 2.7 21 165-185 4-24 (189)
300 3kb2_A SPBC2 prophage-derived 95.0 0.014 4.7E-07 49.2 3.2 22 165-186 3-24 (173)
301 2nq2_C Hypothetical ABC transp 95.0 0.012 4.2E-07 54.0 3.1 23 165-187 33-55 (253)
302 3lw7_A Adenylate kinase relate 94.9 0.014 4.9E-07 48.9 3.2 19 165-183 3-21 (179)
303 3lnc_A Guanylate kinase, GMP k 94.9 0.0097 3.3E-07 53.3 2.2 23 164-186 28-51 (231)
304 2bbw_A Adenylate kinase 4, AK4 94.9 0.016 5.6E-07 52.4 3.7 21 164-184 28-48 (246)
305 2eyu_A Twitching motility prot 94.9 0.012 4E-07 54.4 2.7 22 165-186 27-48 (261)
306 2i3b_A HCR-ntpase, human cance 94.8 0.012 3.9E-07 51.7 2.3 23 165-187 3-25 (189)
307 2v9p_A Replication protein E1; 94.7 0.013 4.3E-07 55.5 2.6 22 165-186 128-149 (305)
308 2pjz_A Hypothetical protein ST 94.7 0.016 5.3E-07 53.7 3.2 23 165-187 32-54 (263)
309 3nh6_A ATP-binding cassette SU 94.7 0.011 3.7E-07 56.0 2.0 23 165-187 82-104 (306)
310 1knq_A Gluconate kinase; ALFA/ 94.7 0.017 5.8E-07 49.1 3.1 22 164-185 9-30 (175)
311 2bbs_A Cystic fibrosis transme 94.6 0.017 5.9E-07 54.2 3.2 23 165-187 66-88 (290)
312 3fvq_A Fe(3+) IONS import ATP- 94.6 0.017 5.9E-07 55.9 3.2 23 165-187 32-54 (359)
313 2f1r_A Molybdopterin-guanine d 94.6 0.0087 3E-07 51.7 0.9 22 165-186 4-25 (171)
314 3uie_A Adenylyl-sulfate kinase 94.5 0.017 5.8E-07 50.5 2.7 22 165-186 27-48 (200)
315 2if2_A Dephospho-COA kinase; a 94.5 0.019 6.4E-07 50.2 2.9 21 165-185 3-23 (204)
316 3tui_C Methionine import ATP-b 94.5 0.019 6.6E-07 55.6 3.3 23 165-187 56-78 (366)
317 4a74_A DNA repair and recombin 94.5 0.017 5.8E-07 51.1 2.6 22 165-186 27-48 (231)
318 1cke_A CK, MSSA, protein (cyti 94.4 0.019 6.4E-07 50.9 2.9 23 164-186 6-28 (227)
319 1qhx_A CPT, protein (chloramph 94.4 0.024 8.1E-07 48.2 3.4 22 165-186 5-26 (178)
320 1z47_A CYSA, putative ABC-tran 94.4 0.02 6.9E-07 55.3 3.3 23 165-187 43-65 (355)
321 3t61_A Gluconokinase; PSI-biol 94.4 0.023 7.9E-07 49.6 3.4 24 163-186 18-41 (202)
322 3aez_A Pantothenate kinase; tr 94.4 0.017 5.7E-07 54.8 2.6 24 163-186 90-113 (312)
323 1ly1_A Polynucleotide kinase; 94.4 0.02 6.9E-07 48.5 2.9 21 165-185 4-24 (181)
324 1y63_A LMAJ004144AAA protein; 94.4 0.029 9.9E-07 48.4 4.0 24 163-186 10-33 (184)
325 2yyz_A Sugar ABC transporter, 94.4 0.021 7.2E-07 55.3 3.3 23 165-187 31-53 (359)
326 3tqc_A Pantothenate kinase; bi 94.3 0.04 1.4E-06 52.5 5.1 25 162-186 91-115 (321)
327 2it1_A 362AA long hypothetical 94.3 0.022 7.4E-07 55.2 3.3 23 165-187 31-53 (362)
328 3rlf_A Maltose/maltodextrin im 94.3 0.022 7.4E-07 55.6 3.3 23 165-187 31-53 (381)
329 1jjv_A Dephospho-COA kinase; P 94.3 0.022 7.5E-07 49.8 3.0 21 165-185 4-24 (206)
330 2ehv_A Hypothetical protein PH 94.3 0.022 7.7E-07 51.0 3.1 20 165-184 32-51 (251)
331 3vaa_A Shikimate kinase, SK; s 94.3 0.027 9.2E-07 49.2 3.6 23 163-185 25-47 (199)
332 1g29_1 MALK, maltose transport 94.3 0.023 7.8E-07 55.3 3.3 23 165-187 31-53 (372)
333 1v43_A Sugar-binding transport 94.2 0.023 8E-07 55.2 3.3 23 165-187 39-61 (372)
334 1nks_A Adenylate kinase; therm 94.2 0.023 8E-07 48.6 2.8 22 165-186 3-24 (194)
335 1xjc_A MOBB protein homolog; s 94.1 0.03 1E-06 48.3 3.4 24 163-186 4-27 (169)
336 3ec2_A DNA replication protein 94.1 0.019 6.4E-07 49.2 2.1 22 165-186 40-61 (180)
337 2jeo_A Uridine-cytidine kinase 94.1 0.023 7.8E-07 51.5 2.7 23 164-186 26-48 (245)
338 1nij_A Hypothetical protein YJ 94.1 0.017 5.7E-07 54.8 1.9 24 163-186 4-27 (318)
339 1nn5_A Similar to deoxythymidy 94.1 0.033 1.1E-06 48.7 3.7 23 163-185 9-31 (215)
340 2qt1_A Nicotinamide riboside k 94.1 0.029 9.9E-07 49.2 3.3 23 164-186 22-44 (207)
341 2gza_A Type IV secretion syste 94.1 0.023 7.7E-07 55.0 2.8 23 165-187 177-199 (361)
342 2jaq_A Deoxyguanosine kinase; 94.0 0.03 1E-06 48.4 3.3 21 165-185 2-22 (205)
343 3t5g_A GTP-binding protein RHE 94.0 0.01 3.6E-07 50.3 0.2 54 67-128 110-163 (181)
344 1kht_A Adenylate kinase; phosp 94.0 0.031 1E-06 47.8 3.3 22 164-185 4-25 (192)
345 3iij_A Coilin-interacting nucl 94.0 0.038 1.3E-06 47.2 3.8 23 163-185 11-33 (180)
346 1lw7_A Transcriptional regulat 94.0 0.02 6.7E-07 55.3 2.2 24 164-187 171-194 (365)
347 3gd7_A Fusion complex of cysti 94.0 0.028 9.6E-07 55.0 3.2 23 165-187 49-71 (390)
348 2rhm_A Putative kinase; P-loop 93.9 0.03 1E-06 48.1 3.1 22 164-185 6-27 (193)
349 3trf_A Shikimate kinase, SK; a 93.9 0.035 1.2E-06 47.5 3.5 22 164-185 6-27 (185)
350 3d31_A Sulfate/molybdate ABC t 93.9 0.02 7E-07 55.1 2.1 23 165-187 28-50 (348)
351 3jvv_A Twitching mobility prot 93.9 0.024 8.3E-07 54.7 2.7 22 165-186 125-146 (356)
352 2kjq_A DNAA-related protein; s 93.9 0.023 7.9E-07 47.6 2.2 22 165-186 38-59 (149)
353 2pt7_A CAG-ALFA; ATPase, prote 93.9 0.025 8.6E-07 54.0 2.7 23 165-187 173-195 (330)
354 2cdn_A Adenylate kinase; phosp 93.8 0.044 1.5E-06 47.7 4.0 24 162-185 19-42 (201)
355 1ukz_A Uridylate kinase; trans 93.7 0.045 1.5E-06 47.6 3.8 25 161-185 13-37 (203)
356 1sq5_A Pantothenate kinase; P- 93.7 0.03 1E-06 52.7 2.8 23 164-186 81-103 (308)
357 1rz3_A Hypothetical protein rb 93.6 0.033 1.1E-06 48.8 2.8 22 164-185 23-44 (201)
358 1oxx_K GLCV, glucose, ABC tran 93.6 0.019 6.7E-07 55.4 1.4 23 165-187 33-55 (353)
359 3fb4_A Adenylate kinase; psych 93.6 0.039 1.3E-06 48.5 3.3 21 165-185 2-22 (216)
360 4e22_A Cytidylate kinase; P-lo 93.6 0.045 1.5E-06 49.9 3.8 21 164-184 28-48 (252)
361 1odf_A YGR205W, hypothetical 3 93.5 0.035 1.2E-06 52.0 3.0 24 163-186 31-54 (290)
362 3kta_A Chromosome segregation 93.5 0.037 1.3E-06 47.3 2.9 21 165-185 28-48 (182)
363 3cm0_A Adenylate kinase; ATP-b 93.5 0.04 1.4E-06 47.1 3.1 21 165-185 6-26 (186)
364 2ewv_A Twitching motility prot 93.5 0.031 1.1E-06 54.2 2.6 22 165-186 138-159 (372)
365 1gvn_B Zeta; postsegregational 93.5 0.042 1.4E-06 51.3 3.4 23 163-185 33-55 (287)
366 2c95_A Adenylate kinase 1; tra 93.5 0.048 1.7E-06 46.9 3.6 22 164-185 10-31 (196)
367 3dl0_A Adenylate kinase; phosp 93.4 0.044 1.5E-06 48.2 3.3 21 165-185 2-22 (216)
368 1qf9_A UMP/CMP kinase, protein 93.4 0.051 1.8E-06 46.4 3.6 22 164-185 7-28 (194)
369 1zak_A Adenylate kinase; ATP:A 93.3 0.046 1.6E-06 48.5 3.3 24 163-186 5-28 (222)
370 1uf9_A TT1252 protein; P-loop, 93.3 0.044 1.5E-06 47.4 3.1 24 163-186 8-31 (203)
371 3zvl_A Bifunctional polynucleo 93.3 0.14 4.7E-06 50.4 7.0 25 162-186 257-281 (416)
372 1aky_A Adenylate kinase; ATP:A 93.3 0.052 1.8E-06 48.0 3.6 23 163-185 4-26 (220)
373 2v54_A DTMP kinase, thymidylat 93.3 0.053 1.8E-06 47.0 3.6 23 164-186 5-27 (204)
374 1zd8_A GTP:AMP phosphotransfer 93.3 0.048 1.7E-06 48.5 3.4 23 163-185 7-29 (227)
375 2x8a_A Nuclear valosin-contain 93.3 0.034 1.2E-06 51.5 2.4 22 165-186 46-67 (274)
376 2wwf_A Thymidilate kinase, put 93.3 0.056 1.9E-06 47.1 3.7 24 163-186 10-33 (212)
377 2plr_A DTMP kinase, probable t 93.2 0.047 1.6E-06 47.5 3.1 22 165-186 6-27 (213)
378 1ixz_A ATP-dependent metallopr 93.2 0.037 1.3E-06 50.1 2.4 22 165-186 51-72 (254)
379 2vp4_A Deoxynucleoside kinase; 93.1 0.043 1.5E-06 49.2 2.8 23 164-186 21-43 (230)
380 1gtv_A TMK, thymidylate kinase 93.1 0.026 8.9E-07 49.4 1.2 22 165-186 2-23 (214)
381 2oap_1 GSPE-2, type II secreti 93.0 0.042 1.4E-06 55.7 2.9 22 165-186 262-283 (511)
382 1via_A Shikimate kinase; struc 93.0 0.05 1.7E-06 46.2 2.9 21 165-185 6-26 (175)
383 1tev_A UMP-CMP kinase; ploop, 93.0 0.051 1.7E-06 46.5 2.9 22 164-185 4-25 (196)
384 2bwj_A Adenylate kinase 5; pho 92.9 0.059 2E-06 46.4 3.3 23 164-186 13-35 (199)
385 1p9r_A General secretion pathw 92.9 0.043 1.5E-06 54.2 2.7 22 165-186 169-190 (418)
386 2yvu_A Probable adenylyl-sulfa 92.9 0.069 2.4E-06 45.8 3.6 23 164-186 14-36 (186)
387 2z0h_A DTMP kinase, thymidylat 92.8 0.062 2.1E-06 46.2 3.3 22 165-186 2-23 (197)
388 2pt5_A Shikimate kinase, SK; a 92.8 0.062 2.1E-06 45.0 3.3 21 165-185 2-22 (168)
389 1e6c_A Shikimate kinase; phosp 92.8 0.059 2E-06 45.4 3.1 21 165-185 4-24 (173)
390 1yqt_A RNAse L inhibitor; ATP- 92.8 0.053 1.8E-06 55.3 3.3 23 165-187 49-71 (538)
391 2pbr_A DTMP kinase, thymidylat 92.8 0.063 2.2E-06 45.9 3.3 21 165-185 2-22 (195)
392 2vli_A Antibiotic resistance p 92.8 0.051 1.7E-06 46.2 2.7 22 164-185 6-27 (183)
393 1jbk_A CLPB protein; beta barr 92.8 0.071 2.4E-06 44.9 3.6 23 164-186 44-66 (195)
394 1e4v_A Adenylate kinase; trans 92.7 0.063 2.2E-06 47.3 3.3 21 165-185 2-22 (214)
395 2npi_A Protein CLP1; CLP1-PCF1 92.7 0.043 1.5E-06 54.9 2.3 23 165-187 140-162 (460)
396 3tlx_A Adenylate kinase 2; str 92.7 0.062 2.1E-06 48.7 3.2 23 163-185 29-51 (243)
397 2pez_A Bifunctional 3'-phospho 92.6 0.065 2.2E-06 45.7 3.1 22 165-186 7-28 (179)
398 2iyv_A Shikimate kinase, SK; t 92.6 0.062 2.1E-06 45.9 3.0 21 165-185 4-24 (184)
399 2w0m_A SSO2452; RECA, SSPF, un 92.6 0.06 2.1E-06 47.3 2.9 22 165-186 25-46 (235)
400 3a4m_A L-seryl-tRNA(SEC) kinas 92.6 0.062 2.1E-06 49.1 3.1 22 164-185 5-26 (260)
401 3b60_A Lipid A export ATP-bind 92.5 0.06 2E-06 55.3 3.1 23 165-187 371-393 (582)
402 1vht_A Dephospho-COA kinase; s 92.4 0.069 2.4E-06 47.1 3.1 22 164-185 5-26 (218)
403 1x3s_A RAS-related protein RAB 92.4 0.025 8.5E-07 48.3 0.1 69 42-117 91-164 (195)
404 3ozx_A RNAse L inhibitor; ATP 92.4 0.065 2.2E-06 54.7 3.2 24 165-188 27-50 (538)
405 3euj_A Chromosome partition pr 92.4 0.056 1.9E-06 54.3 2.7 23 164-186 30-52 (483)
406 1iy2_A ATP-dependent metallopr 92.4 0.055 1.9E-06 49.8 2.4 22 165-186 75-96 (278)
407 3pxg_A Negative regulator of g 92.3 0.29 9.8E-06 48.8 7.8 23 164-186 202-224 (468)
408 1in4_A RUVB, holliday junction 92.3 0.056 1.9E-06 51.4 2.5 22 165-186 53-74 (334)
409 3b5x_A Lipid A export ATP-bind 92.3 0.064 2.2E-06 55.1 3.1 23 165-187 371-393 (582)
410 2obl_A ESCN; ATPase, hydrolase 92.3 0.058 2E-06 51.8 2.6 23 165-187 73-95 (347)
411 1uj2_A Uridine-cytidine kinase 92.3 0.071 2.4E-06 48.4 3.1 23 163-185 22-44 (252)
412 2yl4_A ATP-binding cassette SU 92.3 0.06 2E-06 55.5 2.8 23 165-187 372-394 (595)
413 3j16_B RLI1P; ribosome recycli 92.2 0.088 3E-06 54.5 4.1 24 165-188 105-128 (608)
414 2p5t_B PEZT; postsegregational 92.2 0.058 2E-06 49.1 2.4 24 163-186 32-55 (253)
415 1cr0_A DNA primase/helicase; R 92.2 0.059 2E-06 50.0 2.4 22 165-186 37-58 (296)
416 3be4_A Adenylate kinase; malar 92.1 0.071 2.4E-06 47.2 2.8 22 164-185 6-27 (217)
417 1lv7_A FTSH; alpha/beta domain 92.1 0.094 3.2E-06 47.5 3.7 23 164-186 46-68 (257)
418 3qf4_B Uncharacterized ABC tra 92.1 0.066 2.3E-06 55.2 2.9 23 165-187 383-405 (598)
419 1f2t_A RAD50 ABC-ATPase; DNA d 92.1 0.08 2.7E-06 44.3 2.9 20 165-184 25-44 (149)
420 2xb4_A Adenylate kinase; ATP-b 92.0 0.086 2.9E-06 46.9 3.3 21 165-185 2-22 (223)
421 1ak2_A Adenylate kinase isoenz 92.0 0.1 3.5E-06 46.7 3.7 24 163-186 16-39 (233)
422 3bk7_A ABC transporter ATP-bin 92.0 0.077 2.6E-06 54.9 3.2 23 165-187 119-141 (607)
423 2ze6_A Isopentenyl transferase 91.9 0.085 2.9E-06 48.1 3.1 22 165-186 3-24 (253)
424 4b4t_L 26S protease subunit RP 91.9 0.97 3.3E-05 44.7 10.9 24 163-186 215-238 (437)
425 4a82_A Cystic fibrosis transme 91.8 0.058 2E-06 55.4 2.0 23 165-187 369-391 (578)
426 2dpy_A FLII, flagellum-specifi 91.8 0.072 2.4E-06 52.9 2.6 23 165-187 159-181 (438)
427 3u61_B DNA polymerase accessor 91.7 0.87 3E-05 42.4 10.1 44 274-317 105-150 (324)
428 3ozx_A RNAse L inhibitor; ATP 91.7 0.11 3.7E-06 53.0 4.0 23 165-187 296-318 (538)
429 3qf7_A RAD50; ABC-ATPase, ATPa 91.6 0.084 2.9E-06 51.0 2.9 20 165-184 25-44 (365)
430 3qf4_A ABC transporter, ATP-bi 91.6 0.072 2.5E-06 54.9 2.5 23 165-187 371-393 (587)
431 2f6r_A COA synthase, bifunctio 91.6 0.098 3.4E-06 48.5 3.2 23 162-184 74-96 (281)
432 3nwj_A ATSK2; P loop, shikimat 91.6 0.086 3E-06 48.2 2.8 21 165-185 50-70 (250)
433 2cvh_A DNA repair and recombin 91.6 0.1 3.5E-06 45.6 3.2 21 165-185 22-42 (220)
434 2p65_A Hypothetical protein PF 91.5 0.089 3E-06 44.3 2.6 23 164-186 44-66 (187)
435 3bos_A Putative DNA replicatio 91.5 0.12 3.9E-06 45.6 3.5 23 164-186 53-75 (242)
436 1n0w_A DNA repair protein RAD5 91.5 0.086 3E-06 46.8 2.7 22 165-186 26-47 (243)
437 1yqt_A RNAse L inhibitor; ATP- 91.5 0.13 4.4E-06 52.4 4.2 24 164-187 313-336 (538)
438 3r20_A Cytidylate kinase; stru 91.5 0.11 3.9E-06 47.0 3.4 23 163-185 9-31 (233)
439 1zuh_A Shikimate kinase; alpha 91.4 0.11 3.8E-06 43.6 3.1 23 163-185 7-29 (168)
440 1m7g_A Adenylylsulfate kinase; 91.2 0.12 3.9E-06 45.5 3.2 22 165-186 27-48 (211)
441 2w58_A DNAI, primosome compone 91.2 0.13 4.5E-06 44.5 3.5 23 164-186 55-77 (202)
442 2qz4_A Paraplegin; AAA+, SPG7, 91.1 0.18 6.1E-06 45.4 4.4 23 163-185 39-61 (262)
443 3bk7_A ABC transporter ATP-bin 91.1 0.15 5E-06 52.8 4.2 23 165-187 384-406 (607)
444 1svm_A Large T antigen; AAA+ f 91.0 0.12 4E-06 50.3 3.2 24 163-186 169-192 (377)
445 3umf_A Adenylate kinase; rossm 91.0 0.15 5.1E-06 45.7 3.6 23 164-186 30-52 (217)
446 3sr0_A Adenylate kinase; phosp 90.9 0.14 4.7E-06 45.4 3.3 22 165-186 2-23 (206)
447 4eaq_A DTMP kinase, thymidylat 90.9 0.12 4.1E-06 46.5 2.9 23 164-186 27-49 (229)
448 3k9g_A PF-32 protein; ssgcid, 90.8 1.3 4.4E-05 40.0 10.0 48 266-314 160-208 (267)
449 3j16_B RLI1P; ribosome recycli 90.7 0.12 4.2E-06 53.4 3.2 24 165-188 380-403 (608)
450 3ake_A Cytidylate kinase; CMP 90.5 0.16 5.6E-06 43.8 3.4 21 165-185 4-24 (208)
451 1ltq_A Polynucleotide kinase; 90.3 0.15 5E-06 47.2 3.1 21 165-185 4-24 (301)
452 1a7j_A Phosphoribulokinase; tr 90.3 0.12 4.1E-06 48.2 2.5 23 163-185 5-27 (290)
453 1q3t_A Cytidylate kinase; nucl 90.2 0.19 6.6E-06 44.9 3.8 23 163-185 16-38 (236)
454 2grj_A Dephospho-COA kinase; T 90.2 0.16 5.6E-06 44.3 3.2 24 163-186 12-35 (192)
455 2chg_A Replication factor C sm 90.2 0.15 5.2E-06 43.9 2.9 22 165-186 40-61 (226)
456 1njg_A DNA polymerase III subu 90.1 0.15 5.2E-06 44.4 2.9 22 165-186 47-68 (250)
457 1qhl_A Protein (cell division 90.1 0.023 7.9E-07 51.4 -2.6 22 166-187 30-51 (227)
458 3h4m_A Proteasome-activating n 89.9 0.2 6.8E-06 45.8 3.6 23 164-186 52-74 (285)
459 1sxj_E Activator 1 40 kDa subu 89.9 0.17 5.8E-06 47.8 3.2 22 165-186 38-59 (354)
460 2qmh_A HPR kinase/phosphorylas 89.9 0.18 6.1E-06 44.7 3.1 23 165-187 36-58 (205)
461 3t15_A Ribulose bisphosphate c 89.9 0.2 6.8E-06 46.6 3.6 24 163-186 36-59 (293)
462 4f4c_A Multidrug resistance pr 89.8 0.12 4.2E-06 58.2 2.5 23 165-187 1107-1129(1321)
463 1nlf_A Regulatory protein REPA 89.8 0.15 5.1E-06 46.9 2.6 21 165-185 32-52 (279)
464 3syl_A Protein CBBX; photosynt 89.8 0.22 7.6E-06 46.0 3.9 24 163-186 67-90 (309)
465 3qks_A DNA double-strand break 89.7 0.17 5.9E-06 44.4 2.9 20 165-184 25-44 (203)
466 3b9p_A CG5977-PA, isoform A; A 89.7 0.21 7.1E-06 46.0 3.6 23 164-186 55-77 (297)
467 4b4t_J 26S protease regulatory 89.4 1.8 6.2E-05 42.3 10.1 23 164-186 183-205 (405)
468 3bfv_A CAPA1, CAPB2, membrane 89.3 0.84 2.9E-05 41.9 7.4 46 270-317 212-258 (271)
469 1qvr_A CLPB protein; coiled co 89.2 1 3.5E-05 48.3 9.1 22 165-186 193-214 (854)
470 1fnn_A CDC6P, cell division co 89.1 0.21 7.2E-06 47.5 3.3 22 165-186 46-67 (389)
471 3n70_A Transport activator; si 89.1 0.21 7.2E-06 41.1 2.8 22 165-186 26-47 (145)
472 3cf0_A Transitional endoplasmi 88.9 0.26 9E-06 45.9 3.6 23 164-186 50-72 (301)
473 3cr8_A Sulfate adenylyltranfer 88.8 0.13 4.3E-06 52.7 1.5 22 165-186 371-392 (552)
474 1r6b_X CLPA protein; AAA+, N-t 88.8 0.98 3.3E-05 47.6 8.4 24 163-186 207-230 (758)
475 2iw3_A Elongation factor 3A; a 88.8 0.13 4.3E-06 56.1 1.5 24 164-187 700-723 (986)
476 2qby_A CDC6 homolog 1, cell di 88.7 0.25 8.6E-06 46.7 3.5 23 164-186 46-68 (386)
477 3eie_A Vacuolar protein sortin 88.7 0.39 1.3E-05 45.1 4.7 24 163-186 51-74 (322)
478 3ux8_A Excinuclease ABC, A sub 88.7 0.15 5.1E-06 53.2 2.0 21 164-184 349-369 (670)
479 2dr3_A UPF0273 protein PH0284; 88.6 0.22 7.6E-06 44.1 2.9 20 165-184 25-44 (247)
480 1p5z_B DCK, deoxycytidine kina 88.6 0.16 5.5E-06 46.3 1.9 24 163-186 24-47 (263)
481 1l8q_A Chromosomal replication 88.5 0.22 7.5E-06 46.7 2.9 22 165-186 39-60 (324)
482 2ph1_A Nucleotide-binding prot 88.5 0.98 3.4E-05 40.8 7.2 42 272-315 152-194 (262)
483 4fcw_A Chaperone protein CLPB; 88.5 0.26 8.9E-06 45.5 3.3 22 165-186 49-70 (311)
484 2ocp_A DGK, deoxyguanosine kin 88.4 0.25 8.4E-06 44.3 3.0 22 165-186 4-25 (241)
485 4f4c_A Multidrug resistance pr 88.3 0.22 7.4E-06 56.2 3.1 23 165-187 446-468 (1321)
486 2dhr_A FTSH; AAA+ protein, hex 88.2 0.36 1.2E-05 48.7 4.4 22 165-186 66-87 (499)
487 3cf2_A TER ATPase, transitiona 88.2 1.9 6.4E-05 46.0 10.0 24 163-186 238-261 (806)
488 1ofh_A ATP-dependent HSL prote 88.2 0.29 9.9E-06 45.0 3.4 22 164-185 51-72 (310)
489 1zcb_A G alpha I/13; GTP-bindi 88.1 0.26 9E-06 47.5 3.2 21 163-183 33-53 (362)
490 1sxj_C Activator 1 40 kDa subu 88.0 0.25 8.7E-06 46.7 3.0 22 165-186 48-69 (340)
491 3l0i_B RAS-related protein RAB 88.0 0.36 1.2E-05 41.4 3.7 80 40-128 107-190 (199)
492 1e69_A Chromosome segregation 87.9 0.23 7.7E-06 46.9 2.5 20 165-184 26-45 (322)
493 3a8t_A Adenylate isopentenyltr 87.9 0.31 1.1E-05 46.6 3.5 23 165-187 42-64 (339)
494 3g5u_A MCG1178, multidrug resi 87.9 0.22 7.6E-06 56.0 2.8 24 164-187 417-440 (1284)
495 4aby_A DNA repair protein RECN 87.9 0.097 3.3E-06 50.9 -0.1 20 165-184 62-81 (415)
496 1xwi_A SKD1 protein; VPS4B, AA 87.9 0.46 1.6E-05 44.8 4.6 23 164-186 46-68 (322)
497 2ga8_A Hypothetical 39.9 kDa p 87.9 0.29 9.8E-06 47.2 3.2 23 163-185 24-46 (359)
498 1tue_A Replication protein E1; 87.8 0.2 6.9E-06 44.6 2.0 21 165-185 60-80 (212)
499 3tqf_A HPR(Ser) kinase; transf 87.8 0.28 9.5E-06 42.5 2.8 22 165-186 18-39 (181)
500 1ko7_A HPR kinase/phosphatase; 87.7 0.26 8.7E-06 46.7 2.7 23 165-187 146-168 (314)
No 1
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.94 E-value=1.6e-26 Score=233.73 Aligned_cols=260 Identities=20% Similarity=0.231 Sum_probs=171.0
Q ss_pred ccccccccccC---CCCchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHH
Q 016883 42 QLLSLSLHKHY---PLPLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAK 118 (381)
Q Consensus 42 ~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~ 118 (381)
+++++-++... ....++.+++++ ..+|+++|+||+|+..... ...+.|..+..+.+.+|+.++.+
T Consensus 104 d~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~---------~~~e~~~lg~~~~~~iSA~~g~g- 171 (456)
T 4dcu_A 104 DVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA---------NIYDFYSLGFGEPYPISGTHGLG- 171 (456)
T ss_dssp SEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC------------------CCSGGGSSSSEEECCTTTCTT-
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhhh---------hHHHHHHcCCCceEEeecccccc-
Confidence 34444455332 233455566665 3589999999999863221 11133444455678889988877
Q ss_pred HHHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcc
Q 016883 119 DAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT 198 (381)
Q Consensus 119 ~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt 198 (381)
+.+.+..+.+.+.... .........+|+++|.+|+|||||+|+|++.....++..+++|
T Consensus 172 --v~~L~~~i~~~l~~~~-------------------~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt 230 (456)
T 4dcu_A 172 --LGDLLDAVAEHFKNIP-------------------ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT 230 (456)
T ss_dssp --HHHHHHHHHTTGGGSC-------------------SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-----
T ss_pred --hHHHHHHHHhhccccc-------------------ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeE
Confidence 3333333322211000 0011234569999999999999999999988777888999999
Q ss_pred cccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEE
Q 016883 199 RDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIF 278 (381)
Q Consensus 199 ~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~ 278 (381)
.+.....+..++..+.+|||||+.+...... ..+.+ ....+..++..+|++++
T Consensus 231 ~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~-~~e~~--------------------------~~~~~~~~~~~ad~~ll 283 (456)
T 4dcu_A 231 RDAVDTSFTYNQQEFVIVDTAGMRKKGKVYE-TTEKY--------------------------SVLRALKAIDRSEVVAV 283 (456)
T ss_dssp -CTTSEEEEETTEEEEETTGGGTTTBTTBCC-CCSHH--------------------------HHHHHHHHHHHCSEEEE
T ss_pred EEEEEEEEEECCceEEEEECCCCCcCcccch-HHHHH--------------------------HHHHHHHHHhhCCEEEE
Confidence 9998888888899999999999876432211 11111 11245567789999999
Q ss_pred EEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch--h-HHH--h----hCCCceEEEecCCCCCHHHHHH
Q 016883 279 LVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ--V-SEF--W----SLGFSPLPISAISGTGTGELLD 349 (381)
Q Consensus 279 VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~--~-~~~--~----~~~~~~~~vSA~~g~gi~~l~~ 349 (381)
|+|++++++.++.++...+.+. ++|+++|+||+|+.+..... . .+. . ....+++++||++|.|++++++
T Consensus 284 viD~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~ 361 (456)
T 4dcu_A 284 VLDGEEGIIEQDKRIAGYAHEA--GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMP 361 (456)
T ss_dssp EEETTTCCCHHHHHHHHHHHHT--TCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHH
T ss_pred EEeCCCCcCHHHHHHHHHHHHc--CCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHH
Confidence 9999999999999999888876 89999999999998643221 1 111 1 1246899999999999999999
Q ss_pred HHHHHhhhcccccc
Q 016883 350 LVCSELKKVEVCIG 363 (381)
Q Consensus 350 ~i~~~l~~~~~~~~ 363 (381)
++.+.+........
T Consensus 362 ~i~~~~~~~~~~~~ 375 (456)
T 4dcu_A 362 AIIKASENHSLRVQ 375 (456)
T ss_dssp HHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcccCC
Confidence 99998876654433
No 2
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.94 E-value=1.2e-26 Score=233.44 Aligned_cols=244 Identities=23% Similarity=0.273 Sum_probs=163.1
Q ss_pred CchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhhhhhhhhh
Q 016883 55 PLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSLLSRQLII 134 (381)
Q Consensus 55 ~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~~ 134 (381)
+..+.+++++ ..+|+++|+||+|+.....+ .. +.|..+..+.+.+|+.++.+ +.+.+..+.+.+..
T Consensus 100 d~~~~~~l~~--~~~pvilv~NK~D~~~~~~~------~~---~~~~lg~~~~~~iSA~~g~g---v~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 100 DEEVAKILYR--TKKPVVLAVNKLDNTEMRAN------IY---DFYSLGFGEPYPISGTHGLG---LGDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHTT--CCSCEEEEEECCCC-----C------CC---SSGGGSSCCCEECBTTTTBT---HHHHHHHHHHTGGG
T ss_pred HHHHHHHHHH--cCCCEEEEEECccCccchhh------HH---HHHHcCCCCeEEEeCcCCCC---hHHHHHHHHHhcCc
Confidence 3455666664 35899999999998643211 11 22333334788999999888 44443333332211
Q ss_pred hhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEE
Q 016883 135 QDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFM 214 (381)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~ 214 (381)
.++ .......++|+++|.+|||||||+|+|++.....++..+++|++.....+..++..+.
T Consensus 166 ~~~-------------------~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~ 226 (436)
T 2hjg_A 166 IPE-------------------TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFV 226 (436)
T ss_dssp CCS-------------------SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEE
T ss_pred ccc-------------------ccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEE
Confidence 000 0012235699999999999999999999988767888999999988888888888999
Q ss_pred EEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHH
Q 016883 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA 294 (381)
Q Consensus 215 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~ 294 (381)
+|||||+.+.....+ .++.+ ....+..++..+|++++|+|++++.+.++..++
T Consensus 227 l~DT~G~~~~~~~~~-~~e~~--------------------------~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~ 279 (436)
T 2hjg_A 227 IVDTAGMRKKGKVYE-TTEKY--------------------------SVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIA 279 (436)
T ss_dssp ETTHHHHTCBTTBCC-CCSHH--------------------------HHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHH
T ss_pred EEECCCcCcCccccc-hHHHH--------------------------HHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHH
Confidence 999999976443211 11211 112344677889999999999999999998888
Q ss_pred HHHHHhCCCCeEEEEEeCccCCCcccch--hH-H----H--hhCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 295 DWLRKNYMDKFIILAVNKCESPRKGIMQ--VS-E----F--WSLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 295 ~~l~~~~~~~p~ivV~NK~Dl~~~~~~~--~~-~----~--~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
..+.+. ++|+++|+||+|+.+..... .. . . ...+.+++++||++|.|++++++.+.+.+.....
T Consensus 280 ~~~~~~--~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 280 GYAHEA--GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp HHHHHT--TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred HHHHHc--CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhhc
Confidence 888775 89999999999998654321 11 1 1 1135689999999999999999999998876543
No 3
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=6.6e-25 Score=220.95 Aligned_cols=250 Identities=23% Similarity=0.276 Sum_probs=161.9
Q ss_pred CchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhhhhhhhhh
Q 016883 55 PLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSLLSRQLII 134 (381)
Q Consensus 55 ~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~~ 134 (381)
+..+.+|+++. .+|+++|+||+|+.... . . .. ..+.+..+..+.+.+||.++.+ +.+.+..+...+..
T Consensus 99 d~~i~~~l~~~--~~p~ilv~NK~D~~~~~-~---~-~~--~~~~~~lg~~~~~~iSA~~g~g---v~~L~~~i~~~l~~ 166 (439)
T 1mky_A 99 DESLADFLRKS--TVDTILVANKAENLREF-E---R-EV--KPELYSLGFGEPIPVSAEHNIN---LDTMLETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHHHH--TCCEEEEEESCCSHHHH-H---H-HT--HHHHGGGSSCSCEECBTTTTBS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCEEEEEeCCCCcccc-H---H-HH--HHHHHhcCCCCEEEEeccCCCC---HHHHHHHHHHhccc
Confidence 34577888874 48999999999974210 0 0 11 0122333334678899999888 44444443332211
Q ss_pred hhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEE
Q 016883 135 QDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFM 214 (381)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~ 214 (381)
... ... . .......++|+++|++|||||||+|+|++.....+++.+++|++...+.+.++|..+.
T Consensus 167 ~~~------~~~--~-------~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~ 231 (439)
T 1mky_A 167 KGL------DLE--S-------KPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV 231 (439)
T ss_dssp TTC------CSS--S-------CCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEE
T ss_pred ccc------cch--h-------ccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEE
Confidence 000 000 0 0012235799999999999999999999988777899999999988888888998999
Q ss_pred EEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHH
Q 016883 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA 294 (381)
Q Consensus 215 liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~ 294 (381)
+|||||+...........+.+. ...+..++..+|++++|+|+..+.+..+..+.
T Consensus 232 l~Dt~G~~~~~~~~~~~~e~~~--------------------------~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~ 285 (439)
T 1mky_A 232 FVDTAGLRRKSRVEPRTVEKYS--------------------------NYRVVDSIEKADVVVIVLDATQGITRQDQRMA 285 (439)
T ss_dssp ESSCSCC-----------CCSC--------------------------CHHHHHHHHHCSEEEEEEETTTCCCHHHHHHH
T ss_pred EEECCCCccccccchhhHHHHH--------------------------HHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHH
Confidence 9999998643321100001100 01344567889999999999998888887777
Q ss_pred HHHHHhCCCCeEEEEEeCccCCCccc--chhH-----H-Hh-hCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 295 DWLRKNYMDKFIILAVNKCESPRKGI--MQVS-----E-FW-SLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 295 ~~l~~~~~~~p~ivV~NK~Dl~~~~~--~~~~-----~-~~-~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
..+... ++|+++|+||+|+..... .+.. . +. ....+++++||++|.|++++++.+.+.+....
T Consensus 286 ~~l~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 286 GLMERR--GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp HHHHHT--TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 777665 899999999999976432 1111 1 11 12458999999999999999999999887654
No 4
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.91 E-value=2.7e-23 Score=178.08 Aligned_cols=158 Identities=42% Similarity=0.692 Sum_probs=116.9
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
++|+++|.+|+|||||+|++.+.........+++|.+.....+...+..+.+|||||+........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------------- 67 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEK-------------- 67 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCH--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHH--------------
Confidence 489999999999999999999887555667777887777777777888999999999976432111
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~ 323 (381)
.+...+..++..+|++++|+|++++.+..+.++...+.+. +.|+++|+||+|+.+... ..
T Consensus 68 -----------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~-~~ 127 (161)
T 2dyk_A 68 -----------------KIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRK--GKPVILVATKVDDPKHEL-YL 127 (161)
T ss_dssp -----------------HHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH--TCCEEEEEECCCSGGGGG-GC
T ss_pred -----------------HHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhc--CCCEEEEEECcccccchH-hH
Confidence 1123455677899999999999998888877777777775 899999999999976521 11
Q ss_pred HHHhhCCC-ceEEEecCCCCCHHHHHHHHHHHh
Q 016883 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 324 ~~~~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
..+...+. +++++||++|.|+++++++|.+.+
T Consensus 128 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 128 GPLYGLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp GGGGGGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHhCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 22234566 799999999999999999998875
No 5
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=6.3e-24 Score=208.20 Aligned_cols=256 Identities=20% Similarity=0.237 Sum_probs=167.4
Q ss_pred CCchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCC---CCCccchhHhhHHHHHHHHHhhhhhhh
Q 016883 54 LPLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDG---QDFGIDVDALEREAKDAVREYSSLLSR 130 (381)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~---~~~~i~~sa~~~~~~~~l~~~~~~l~~ 130 (381)
.++.+..++....+.++.++++||+|+.+... ...|..|... +......+.....+.+.+....+.+..
T Consensus 74 ~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (357)
T 2e87_A 74 LPKFYQELVDVLVDRDTFHKAMAGIDWAIRII--------RELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDIDD 145 (357)
T ss_dssp SCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777776667889999999999864321 2334444322 333444555556665555555444444
Q ss_pred hhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC
Q 016883 131 QLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE 210 (381)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~ 210 (381)
.+.............. . .....++|+++|.+|||||||+|+|++.. ..++..+++|.+.....+...+
T Consensus 146 ~l~~l~~~~~~~~~~~----------~-~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~ 213 (357)
T 2e87_A 146 RLRYLNKAREVLKDLP----------V-VDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGY 213 (357)
T ss_dssp HHHHHHHHHHHGGGSC----------C-CCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETT
T ss_pred HHHHHHHHHHHHhcCC----------c-cCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecC
Confidence 3332222221111110 0 11346799999999999999999999986 4567778888887777777777
Q ss_pred ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHH-HHHHhccccEEEEEEeCCCCC--C
Q 016883 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQ-ATAAIEESCVIIFLVDGQAGL--T 287 (381)
Q Consensus 211 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~ii~VvD~~~~~--~ 287 (381)
..+.+|||||+.+........ ++.. .......+|++++|+|++.+. .
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~------------------------------~~~~~~~~~~~~ad~illV~D~s~~~~~~ 263 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNE------------------------------IEKQAILALRYLGNLIIYIFDPSEHCGFP 263 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCH------------------------------HHHHHHHGGGGTCSEEEEEECTTCTTSSC
T ss_pred ceEEEEeCCCccccchhhhhH------------------------------HHHHHHHHHHhcCCEEEEEEeCCccccCC
Confidence 889999999997642211100 0112 222334699999999987643 4
Q ss_pred hhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcccchhH-HH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 288 AAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-EF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 288 ~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~-~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
..+ ..++..+.....++|+++|+||+|+......+.. .. ...+.+++++||++|+|+++++++|.+.+....
T Consensus 264 ~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 264 LEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHHH
Confidence 333 5567777664448999999999999875433221 11 245678999999999999999999999886543
No 6
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.90 E-value=6.8e-23 Score=185.98 Aligned_cols=178 Identities=22% Similarity=0.278 Sum_probs=129.1
Q ss_pred cCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCC-cccccCCCCcccccceeeEE-eCCceEEEEEcCCCCCccCCCchhh
Q 016883 155 IGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSF-WGEHEFMLVDTGGVLNVSKSQPNIM 232 (381)
Q Consensus 155 ~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~-~~~~~~~~~tt~~~~~~~~~-~~~~~~~liDTPG~~~~~~~~~~~~ 232 (381)
+.+.+....++|+++|.+|+|||||+|+|++.. ...++..+++|.......+. ..+..+.||||||+........ ..
T Consensus 21 ~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~ 99 (223)
T 4dhe_A 21 LRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGA-AK 99 (223)
T ss_dssp GGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCST-HH
T ss_pred hhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChh-hH
Confidence 445566678899999999999999999999986 45778888888877665554 4567899999999875432221 01
Q ss_pred hhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeC
Q 016883 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNK 312 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK 312 (381)
+. +...+ .........+|++++|+|+.++.+..+..++..+... ++|+++|+||
T Consensus 100 ~~-----------------------~~~~~-~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK 153 (223)
T 4dhe_A 100 AH-----------------------WEQLL-SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT--GKPIHSLLTK 153 (223)
T ss_dssp HH-----------------------HHHHH-HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG--CCCEEEEEEC
T ss_pred HH-----------------------HHHHH-HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEec
Confidence 11 11111 1222333458999999999998888888888888875 8999999999
Q ss_pred ccCCCcccchh----H--HHh-------hCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 313 CESPRKGIMQV----S--EFW-------SLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 313 ~Dl~~~~~~~~----~--~~~-------~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+|+........ . ... ..+.+++++||++|.|+++++++|.+.+....
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 154 CDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred cccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 99987543211 1 111 14568999999999999999999999887654
No 7
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=7.5e-23 Score=205.92 Aligned_cols=164 Identities=41% Similarity=0.636 Sum_probs=120.9
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
++|+++|.+|||||||+|+|++...+.+++.+++|++.....+.+++..+.+|||||+..... .
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~-------------- 65 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ--D-------------- 65 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGG--G--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCcccccc--c--------------
Confidence 489999999999999999999988777889999999999888899999999999999975321 1
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~ 323 (381)
.+...+..++..++..+|++++|+|+..+.+..+.++...+++. ++|+++|+||+|+......+.
T Consensus 66 -------------~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~--~~p~ilv~NK~D~~~~~~~~~ 130 (439)
T 1mky_A 66 -------------IISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS--TVDTILVANKAENLREFEREV 130 (439)
T ss_dssp -------------CCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH--TCCEEEEEESCCSHHHHHHHT
T ss_pred -------------hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEeCCCCccccHHHH
Confidence 01112334677788999999999999999998888888888776 899999999999854311122
Q ss_pred -HHHhhCCC-ceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 324 -SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 324 -~~~~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
..+...++ +++++||++|.|+++|++++.+.+.+.
T Consensus 131 ~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 131 KPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp HHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 33445566 789999999999999999999988743
No 8
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.89 E-value=7.9e-23 Score=179.24 Aligned_cols=161 Identities=27% Similarity=0.333 Sum_probs=120.6
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
.+|+++|.+|||||||+|+|.+.....++..+++|.+.....+.+++..+.+|||||+.+... ..+.++
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~~~------- 73 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD----EVERIG------- 73 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS----HHHHHH-------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh----HHHHHH-------
Confidence 489999999999999999999887556677888888877777788888899999999965321 111110
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhC-CCCeEEEEEeCccCCCcccch
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY-MDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
...+..++..+|++++|+|++++.+..+..++..+.+.. .++|+++|+||+|+.......
T Consensus 74 -------------------~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~ 134 (172)
T 2gj8_A 74 -------------------IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM 134 (172)
T ss_dssp -------------------HHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE
T ss_pred -------------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhh
Confidence 123445678999999999999877666666766666543 369999999999985432110
Q ss_pred hHHHhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 323 ~~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
....+.+++++||++|+|+++++++|.+.+..
T Consensus 135 ---~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 135 ---SEVNGHALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp ---EEETTEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred ---hhccCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 11235588999999999999999999987754
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=8.7e-23 Score=195.69 Aligned_cols=164 Identities=26% Similarity=0.314 Sum_probs=129.1
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
.+|+++|.+|||||||+|+|++...+.++..++||++.....+..++.++.||||||+.+...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~----------------- 70 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD----------------- 70 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS-----------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh-----------------
Confidence 379999999999999999999998777788888998877666677788999999999975322
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc-c-
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-M- 321 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~-~- 321 (381)
.+...+...+..++..+|++++|+|++++.+..+.++++.+.+...+.|+++|+||+|+..... .
T Consensus 71 -------------~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~ 137 (301)
T 1wf3_A 71 -------------ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAM 137 (301)
T ss_dssp -------------HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHH
T ss_pred -------------HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHH
Confidence 1122234567788899999999999999888888777777776545799999999999986533 2
Q ss_pred hhHHHhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 322 QVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 322 ~~~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+.........+++++||++|.|+++++++|.+.+++
T Consensus 138 ~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 138 KAYHELLPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred HHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 222222112368999999999999999999988754
No 10
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.89 E-value=1.6e-22 Score=194.31 Aligned_cols=169 Identities=30% Similarity=0.447 Sum_probs=133.7
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC-CceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
.....|+++|.+|||||||+|+|++.....++..+++|++........+ +..+.||||||+.+... +..
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~~--------- 77 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SDV--------- 77 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TCH---------
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-chh---------
Confidence 3456899999999999999999999988778889999998888877877 88999999999976441 111
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHH-HHHHHHhCCCCeEEEEEeCccCC-C
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEI-ADWLRKNYMDKFIILAVNKCESP-R 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~-~~~l~~~~~~~p~ivV~NK~Dl~-~ 317 (381)
+...+...+..++..+|++++|+|++++.+..+..+ +..+... +.|+++|+||+|+. +
T Consensus 78 ------------------l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~ 137 (308)
T 3iev_A 78 ------------------LGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGP 137 (308)
T ss_dssp ------------------HHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSS
T ss_pred ------------------HHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCC
Confidence 122234566778889999999999999888888776 7777775 89999999999998 4
Q ss_pred cccch-hHH-H-hhC--CCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 318 KGIMQ-VSE-F-WSL--GFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~~~~~-~~~-~-~~~--~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
..... ... + ... ..+++++||++|.|+++++++|.+.+.+..
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 138 AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp GGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence 33322 111 1 123 368999999999999999999999987544
No 11
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.89 E-value=1.5e-21 Score=172.48 Aligned_cols=173 Identities=25% Similarity=0.358 Sum_probs=122.6
Q ss_pred cCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhh
Q 016883 155 IGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMED 234 (381)
Q Consensus 155 ~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~ 234 (381)
....+....++|+++|.+|||||||+|+|++.........+++|....... .+..+.+|||||+........ ..+
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~-~~~- 89 (195)
T 3pqc_A 15 PGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKK-ERM- 89 (195)
T ss_dssp TTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHH-HHH-
T ss_pred hhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChh-hHH-
Confidence 345566678899999999999999999999987666666777776654432 255789999999754321110 000
Q ss_pred hhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCcc
Q 016883 235 LAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCE 314 (381)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~D 314 (381)
.+... ..........+|++++|+|++.+....+..+...+... +.|+++|+||+|
T Consensus 90 ----------------------~~~~~-~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~D 144 (195)
T 3pqc_A 90 ----------------------LWKRL-VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL--NIPFTIVLTKMD 144 (195)
T ss_dssp ----------------------HHHHH-HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGG
T ss_pred ----------------------HHHHH-HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEEChh
Confidence 01111 11222333456999999999988888888888888776 899999999999
Q ss_pred CCCcccchhH-----HHh-h-CCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 315 SPRKGIMQVS-----EFW-S-LGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 315 l~~~~~~~~~-----~~~-~-~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+.+....... ... . ...+++++||++|.|+++++++|.+.+++
T Consensus 145 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 145 KVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp GSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred cCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 9865433221 111 1 23689999999999999999999998764
No 12
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.89 E-value=3.1e-22 Score=174.52 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=119.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
..++|+++|.+|||||||+|+|++... .....+++|.+.....+.+++..+.+|||||+.+......
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------------ 73 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA------------ 73 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH------------
Confidence 467999999999999999999998764 3344555666666666777888899999999977654332
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
.++..+|++++|+|++++......+.+..+... +.|+++|+||+|+......
T Consensus 74 --------------------------~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~--~~p~ilv~nK~Dl~~~~~~ 125 (178)
T 2lkc_A 74 --------------------------RGAQVTDIVILVVAADDGVMPQTVEAINHAKAA--NVPIIVAINKMDKPEANPD 125 (178)
T ss_dssp --------------------------SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGG--SCCEEEEEETTTSSCSCHH
T ss_pred --------------------------HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhC--CCCEEEEEECccCCcCCHH
Confidence 345789999999999988777777777666654 8999999999999864322
Q ss_pred hhHHH-hh-------C--CCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 322 QVSEF-WS-------L--GFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 322 ~~~~~-~~-------~--~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+.... .. . ..+++++||++|.|+++++++|.+.+....
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 126 RVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence 21111 11 1 147899999999999999999998877543
No 13
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.88 E-value=5.9e-22 Score=175.68 Aligned_cols=169 Identities=22% Similarity=0.244 Sum_probs=114.2
Q ss_pred cCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCC-cccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhh
Q 016883 155 IGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIME 233 (381)
Q Consensus 155 ~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~ 233 (381)
+.+.+....++|+++|.+|||||||+|+|++.. .......+++|........ +..+.+|||||+.+...... ..+
T Consensus 15 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~-~~~ 90 (195)
T 1svi_A 15 PEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKS-ERE 90 (195)
T ss_dssp GGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHH-HHH
T ss_pred hhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHH-HHH
Confidence 445566678899999999999999999999875 3455666777766554333 44799999999865432111 011
Q ss_pred hhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhcc---ccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEE
Q 016883 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE---SCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAV 310 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~ 310 (381)
.+ ......++.. +|++++|+|++++.+..+.+++..+... +.|+++|+
T Consensus 91 ~~---------------------------~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~p~i~v~ 141 (195)
T 1svi_A 91 AW---------------------------GRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY--GIPVIVIA 141 (195)
T ss_dssp HH---------------------------HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEE
T ss_pred HH---------------------------HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEE
Confidence 11 1122233334 4999999999998888887777877765 89999999
Q ss_pred eCccCCCcccchh----HH-Hh--hCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 311 NKCESPRKGIMQV----SE-FW--SLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 311 NK~Dl~~~~~~~~----~~-~~--~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
||+|+.+...... .. .. ..+.+++++||++|.|+++++++|.+.++
T Consensus 142 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 142 TKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 9999987543321 11 11 13568999999999999999999998775
No 14
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.88 E-value=2.1e-22 Score=204.30 Aligned_cols=164 Identities=26% Similarity=0.336 Sum_probs=100.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|.+|||||||+|+|++...+.++..+++|++.....+.+++..+.+|||||+.++... ++.+++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~----ve~~gi----- 303 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEE----IEHEGI----- 303 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhH----HHHHHH-----
Confidence 34899999999999999999999877778899999999988888889999999999999764332 222211
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
+.+..++..+|++++|+|++++.+.........+.+.+.++|+++|+||+|+.+.....
T Consensus 304 ---------------------~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~ 362 (476)
T 3gee_A 304 ---------------------RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADAL 362 (476)
T ss_dssp -------------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHH
T ss_pred ---------------------HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchh
Confidence 24556778999999999999987764322222222333489999999999998765443
Q ss_pred hHHHhhC-CCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 323 VSEFWSL-GFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 323 ~~~~~~~-~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
...+... ..+++++||++|+|+++++++|.+.+.
T Consensus 363 ~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 363 IRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred HHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 3222221 368999999999999999999999887
No 15
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.88 E-value=7.9e-22 Score=180.52 Aligned_cols=170 Identities=20% Similarity=0.263 Sum_probs=116.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
...++|+++|.+|||||||+|+|++.... +...+++|.......+...+..+.+|||||+.+........++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~------- 98 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIE------- 98 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHH-------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHH-------
Confidence 45679999999999999999999998753 5667777877777666777788999999999653221110000
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChh---HHHHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA---DEEIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~---~~~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
......++..+|++++|+|++++.+.. ...++..+.....+.|+++|+||+|+..
T Consensus 99 ----------------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 99 ----------------------MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp ----------------------HHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred ----------------------HHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 011223457789999999998865432 3456666665445899999999999976
Q ss_pred cccchh------HHH-hhCC--CceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 318 KGIMQV------SEF-WSLG--FSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 318 ~~~~~~------~~~-~~~~--~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
...... ..+ ...+ .+++++||++|+|+++++++|.+.+.+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 157 MDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp --CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 433211 111 2233 689999999999999999999998876553
No 16
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.88 E-value=3.8e-22 Score=174.00 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=116.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.+|||||||+|+|.+.... ....+.++.+.....+..++ ..+.+|||||.........
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 76 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITS---------- 76 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCG----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHH----------
Confidence 3569999999999999999999987643 33344455555555556666 4688999999876544332
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
.++..+|++++|+|++++.+... ..++..+.....+.|+++|+||+|+.+.
T Consensus 77 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 77 ----------------------------TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp ----------------------------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred ----------------------------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 45678999999999997544443 3466666666568999999999998764
Q ss_pred ccchhH---H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 319 GIMQVS---E-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 319 ~~~~~~---~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
...... . ....+.+++++||++|.|+++++++|.+.+.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 432211 1 1335779999999999999999999999876544
No 17
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=1.2e-21 Score=198.97 Aligned_cols=159 Identities=32% Similarity=0.464 Sum_probs=126.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCC-CccCCCchhhhhhhhhhccC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL-NVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~-~~~~~~~~~~~~~~~~~~~~ 242 (381)
++|+++|.+|||||||+|+|++...+.++++++||++.....+.+++..+.+|||||+. +.... ++.+++
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~----ve~~gi----- 314 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDL----VERLGI----- 314 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTT----CCCCCH-----
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhh----HHHHHH-----
Confidence 58999999999999999999998777789999999999888888899999999999997 54322 122221
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
+.+..++..+|++++|+|++++.+..+.++++.+ .++|+++|+||+|+......+
T Consensus 315 ---------------------~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~ 369 (482)
T 1xzp_A 315 ---------------------ERTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEE 369 (482)
T ss_dssp ---------------------HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHH
T ss_pred ---------------------HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHH
Confidence 3456778899999999999988887776666544 388999999999997542212
Q ss_pred hH-HHhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 323 VS-EFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 323 ~~-~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.. .....+.+++++||++|+|+++|+++|.+.+.
T Consensus 370 ~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 370 EIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred HHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 22 22233468999999999999999999999765
No 18
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.87 E-value=7.3e-22 Score=185.00 Aligned_cols=158 Identities=27% Similarity=0.326 Sum_probs=118.7
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
++|+++|.+|||||||+|+|++.. ..+++.+++|.+.....+.+++..+.+|||||+..........
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~------------ 68 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGI------------ 68 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCC------------
Confidence 489999999999999999999986 5788899999988888888888899999999998765321000
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHh--ccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccc
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
..-+..+..++ ..+|++++|+|+++ ......+...+.+. ++|+++|+||+|+......
T Consensus 69 ----------------~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~--~~pvilv~NK~Dl~~~~~~ 128 (256)
T 3iby_A 69 ----------------SQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFEL--GKPVVVALNMMDIAEHRGI 128 (256)
T ss_dssp ----------------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTS--CSCEEEEEECHHHHHHTTC
T ss_pred ----------------CHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHc--CCCEEEEEEChhcCCcCCc
Confidence 00011233444 78999999999986 23334555566655 8999999999998653211
Q ss_pred --hhHH-HhhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 322 --QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 322 --~~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
.... ....+.+++++||++|.|+++++++|.+.
T Consensus 129 ~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 129 SIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp EECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 1111 23457899999999999999999999887
No 19
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=5e-22 Score=200.79 Aligned_cols=163 Identities=28% Similarity=0.407 Sum_probs=119.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|++|||||||+|+|++.....++..+++|++.....+.+++..+.+|||||+.+.... ++.+++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~----ve~~gi----- 294 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQ----VEKIGV----- 294 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-------------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhH----HHHHHH-----
Confidence 35899999999999999999999876678888999999888788889999999999999764321 222211
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
+.+..++..+|++++|+|++++.+..+.+++..+. .+|+++|+||+|+.+.....
T Consensus 295 ---------------------~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~----~~piivV~NK~Dl~~~~~~~ 349 (462)
T 3geh_A 295 ---------------------ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK----HRPLILVMNKIDLVEKQLIT 349 (462)
T ss_dssp -------------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT----TSCEEEEEECTTSSCGGGST
T ss_pred ---------------------HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc----CCcEEEEEECCCCCcchhhH
Confidence 24556678899999999999988888877776664 57999999999998755433
Q ss_pred hHHHhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 323 ~~~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.........+++++||++|.|+++|+++|.+.+....
T Consensus 350 ~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 350 SLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred HHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 2221224568999999999999999999999887654
No 20
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.87 E-value=1.1e-21 Score=169.02 Aligned_cols=154 Identities=20% Similarity=0.148 Sum_probs=95.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|++.+.........++++... .+...+ ..+.+|||||......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~g~~~~~~-------------- 64 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQDGGRW-------------- 64 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE---EEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCEEEEEEEEECCCCccchh--------------
Confidence 469999999999999999999987655555555555432 223333 3578999999876433
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|++++.+... ..++..+.+. ..+.|+++|+||+|+.+
T Consensus 65 ------------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 65 ------------------------LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp --------------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred ------------------------hhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 22245678999999999997543333 3344444442 24799999999999976
Q ss_pred cccchhH---H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 318 KGIMQVS---E-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 318 ~~~~~~~---~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
....... . ....+.+++++||++|.|+++++++|.+.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 4332211 1 23457799999999999999999999988764
No 21
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.87 E-value=2.2e-21 Score=168.40 Aligned_cols=156 Identities=29% Similarity=0.388 Sum_probs=108.8
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
.+|+++|++|||||||+|+|.+... .++..+++|.+.....+.+++..+.+|||||+..+..... .+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--~~---------- 70 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI--DE---------- 70 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH--HH----------
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch--hH----------
Confidence 4899999999999999999998753 4566677777776666777788899999999986543211 00
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHh--ccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccc
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
.....++ ..+|++++|+|+++. .....++..+.+. ++|+++|+||+|+......
T Consensus 71 --------------------~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~ 126 (165)
T 2wji_A 71 --------------------IIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEM--GANLLLALNKMDLAKSLGI 126 (165)
T ss_dssp --------------------HHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHT--TCCEEEEEECHHHHHHTTC
T ss_pred --------------------HHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhc--CCCEEEEEEchHhccccCh
Confidence 1112233 379999999999852 2223455556554 8999999999998542211
Q ss_pred --hhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 322 --QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 322 --~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
+...+ ...+.+++++||++|+|+++++++|.+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 127 EIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp CCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 11121 234679999999999999999999988764
No 22
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=5.2e-21 Score=169.01 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=108.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|.+|||||||+|++.+........ |.......+.+++..+.+|||||+.+...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------------- 75 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSP----TIGSNVEEIVINNTRFLMWDIGGQESLRS---------------- 75 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEEC----CSCSSCEEEEETTEEEEEEECCC----CG----------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcCcC----CCccceEEEEECCEEEEEEECCCCHhHHH----------------
Confidence 4599999999999999999999776443222 22233445566788899999999975432
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|++++.+... ..++..+.+. ..+.|+++|+||+|+....
T Consensus 76 ----------------------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (187)
T 1zj6_A 76 ----------------------SWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM 133 (187)
T ss_dssp ----------------------GGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC
T ss_pred ----------------------HHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC
Confidence 12245688999999999998755443 3344444432 2589999999999997643
Q ss_pred cchhH-HH------hhCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 320 IMQVS-EF------WSLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 320 ~~~~~-~~------~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
..+.. .. ...+++++++||++|.|+++++++|.+.+.....
T Consensus 134 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 134 TVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp CHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHhh
Confidence 22221 11 1235589999999999999999999998866543
No 23
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=5.7e-22 Score=199.31 Aligned_cols=162 Identities=48% Similarity=0.804 Sum_probs=113.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
++|+++|.+|||||||+|+|++...+.+.+.+++|++.....+.+.+..+.+|||||+..... .+.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~---~~~~---------- 70 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE---PFLA---------- 70 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC------------CHHH----------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcch---hHHH----------
Confidence 589999999999999999999987777889999999988888888888999999999963211 1111
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~ 323 (381)
.+..++..++..+|++++|+|+.++.+..+.++.+.+++. ++|+++|+||+|+..... ..
T Consensus 71 -----------------~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~--~~pvilv~NK~D~~~~~~-~~ 130 (436)
T 2hjg_A 71 -----------------QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMRA-NI 130 (436)
T ss_dssp -----------------HHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTC--CSCEEEEEECCCC------CC
T ss_pred -----------------HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCccchh-hH
Confidence 1234666788899999999999999999888888877765 899999999999875421 11
Q ss_pred HHHhhCCC-ceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 324 ~~~~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.++...+. +++++||++|.|+++|++++.+.+.+.
T Consensus 131 ~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 131 YDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp CSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGC
T ss_pred HHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCcc
Confidence 22334455 789999999999999999999988753
No 24
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=2e-21 Score=169.60 Aligned_cols=158 Identities=18% Similarity=0.173 Sum_probs=108.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|.+.........+.++.......+..++. .+.+|||||......
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------------- 75 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS-------------- 75 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH--------------
Confidence 5699999999999999999999876432233333344333333445554 678999999865432
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|++++.+..+ ..++..+.... .+.|+++|+||+|+...
T Consensus 76 ------------------------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 76 ------------------------VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp ---------------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred ------------------------HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 23345688999999999987544333 34555555533 47999999999999864
Q ss_pred ccchh---HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 GIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~~~~~---~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
..... ..+ ...+++++++||++|.|+++++++|.+.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 132 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 32211 111 23577999999999999999999999887643
No 25
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.86 E-value=4e-21 Score=169.24 Aligned_cols=155 Identities=16% Similarity=0.131 Sum_probs=110.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
...+|+++|.+|||||||+|++.+... .... .|.......+.+++..+.+|||||+.+....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------------- 78 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDV---DTIS-PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSY-------------- 78 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCC---SSCC-CCSSEEEEEEEETTEEEEEEEECCSHHHHTT--------------
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC---Cccc-ccCccceEEEEECCEEEEEEECCCCHhHHHH--------------
Confidence 356999999999999999999998762 2222 2223334455667888999999998653321
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
...++..+|++++|+|++++.+..+ ..++..+.+. ..+.|+++|+||+|+.+.
T Consensus 79 ------------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 79 ------------------------WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp ------------------------GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ------------------------HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 2245678999999999987654433 2344443332 247999999999999765
Q ss_pred ccchhH-HHh------hCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 GIMQVS-EFW------SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~~~~~~-~~~------~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
...+.. ... ..+++++++||++|.|+++++++|.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 135 LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 332221 111 2355899999999999999999999988764
No 26
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.86 E-value=2.4e-21 Score=172.11 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=110.9
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 159 ~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
+....++|+++|.+|||||||+|+|++.....+...+ |.......+...+..+.+|||||+.......
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------- 80 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGRVAFTVFDMGGAKKFRGLW---------- 80 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETTEEEEEEEECCSGGGGGGG----------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCCEEEEEEECCCCHhHHHHH----------
Confidence 3445679999999999999999999998754322122 2223344456677889999999997543321
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--C-------CCCeEEE
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--Y-------MDKFIIL 308 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~-------~~~p~iv 308 (381)
..++..+|++++|+|++++.+... ..++..+... . .+.|+++
T Consensus 81 ----------------------------~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piil 132 (199)
T 4bas_A 81 ----------------------------ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLF 132 (199)
T ss_dssp ----------------------------GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEE
T ss_pred ----------------------------HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEE
Confidence 245678999999999998654433 2344443332 1 2789999
Q ss_pred EEeCccCCCcccchhH----HH----hhCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 309 AVNKCESPRKGIMQVS----EF----WSLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 309 V~NK~Dl~~~~~~~~~----~~----~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
|+||+|+......+.. .. ...+++++++||++|+|+++++++|.+.+.+...
T Consensus 133 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 133 FANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp EEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred EEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 9999999876322211 11 2245689999999999999999999998876543
No 27
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=169.17 Aligned_cols=158 Identities=20% Similarity=0.180 Sum_probs=102.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|.+.........++++.. ...+.+++. .+.+|||||+..... .
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~~--~----------- 68 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVY--ERTLTVDGEDTTLVVVDTWEAEKLDK--S----------- 68 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEE--EEEEEETTEEEEEEEECCC---------C-----------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCcccccee--EEEEEECCEEEEEEEEecCCCCccch--h-----------
Confidence 45899999999999999999998875444444444432 223444554 578999999865211 0
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~ 317 (381)
.....++..+|++++|+|++++.+... ..++..+.+. ..++|+++|+||+|+.+
T Consensus 69 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 69 -----------------------WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp -----------------------HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred -----------------------hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 122345678999999999987544333 2355555543 24799999999999976
Q ss_pred cccchhH---H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 318 KGIMQVS---E-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 318 ~~~~~~~---~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
....... . ....+.+++++||++|+|+++++++|.+.+...
T Consensus 126 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 126 CREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 4322111 1 123567899999999999999999999887653
No 28
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=5.9e-21 Score=169.17 Aligned_cols=160 Identities=19% Similarity=0.165 Sum_probs=115.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.+|||||||+|+|++... .....+.++.+.....+..++ ..+.+|||||......
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------- 80 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT------------- 80 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT-------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh-------------
Confidence 356999999999999999999998753 223344445555555556666 4588999999865433
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+..
T Consensus 81 -------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 81 -------------------------ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp -------------------------THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred -------------------------hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 23356788999999999997543332 34555555532 4789999999999976
Q ss_pred cccchhH---H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 318 KGIMQVS---E-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 318 ~~~~~~~---~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
....... . ....+.+++++||++|.|+++++++|.+.+.+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 136 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence 5433221 1 23467899999999999999999999998876554
No 29
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.86 E-value=8.3e-21 Score=164.13 Aligned_cols=153 Identities=17% Similarity=0.167 Sum_probs=108.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|.+|||||||+|++.+..... .. .|.......+.+++..+.+|||||+......
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~--~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~--------------- 67 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVT--TI--PTIGFNVETVTYKNLKFQVWDLGGLTSIRPY--------------- 67 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC--CC--CCSSEEEEEEEETTEEEEEEEECCCGGGGGG---------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCC--cC--CcCccceEEEEECCEEEEEEECCCChhhhHH---------------
Confidence 5699999999999999999998776422 22 2333444456667888999999998654321
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~~ 319 (381)
...++..+|++++|+|++++.+... ..++..+... ..+.|+++|+||+|+.+..
T Consensus 68 -----------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 68 -----------------------WRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp -----------------------GGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred -----------------------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 1245678999999999998654433 2333333321 2589999999999998753
Q ss_pred cchhHH-H------hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 320 IMQVSE-F------WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 320 ~~~~~~-~------~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
...... . ...+++++++||++|.|+++++++|.+.+.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 125 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 222111 1 1235589999999999999999999988764
No 30
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.86 E-value=4.6e-21 Score=168.60 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=108.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
..++|+++|.+|||||||+|+|.+........+.+. ....+.+++..+.+|||||+.+.....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------- 82 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGS----NVEEIVINNTRFLMWDIGGQESLRSSW------------- 82 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSS----SCEEEEETTEEEEEEEESSSGGGTCGG-------------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCce----eeEEEEECCEEEEEEECCCCHhHHHHH-------------
Confidence 467999999999999999999998875434433332 233456678889999999997644321
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
..++..+|++++|+|++++.+... ..++..+.+. ..+.|+++|+||+|+...
T Consensus 83 -------------------------~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 83 -------------------------NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp -------------------------GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 245678999999999998755444 3344444332 358999999999999764
Q ss_pred ccchhH-HH------hhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 319 GIMQVS-EF------WSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 319 ~~~~~~-~~------~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
...+.. .. ...+++++++||++|.|+++++++|.+.
T Consensus 138 ~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 138 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 222211 11 1234588999999999999999998764
No 31
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.86 E-value=2.9e-21 Score=165.81 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=107.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|+|||||+|++.+... .....+++.......+..++. .+.+|||||..+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------------- 66 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--------------- 66 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH---------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH---------------
Confidence 35899999999999999999998763 233444444333334445553 67899999976422
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~ 317 (381)
.....++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+..
T Consensus 67 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 67 -----------------------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp -----------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred -----------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 133456778999999999987543333 34445555432 3799999999999975
Q ss_pred cccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 318 KGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 318 ~~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
..... ...+ ...+.+++++||++|.|+++++++|.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 43221 1111 2356789999999999999999999987753
No 32
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.86 E-value=1.5e-21 Score=184.56 Aligned_cols=163 Identities=23% Similarity=0.280 Sum_probs=121.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|.+|||||||+|+|++.. ..+++.+++|.+.....+...+..+.+|||||+.+.......
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~------------ 69 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQ------------ 69 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcccccccc------------
Confidence 4589999999999999999999987 578889999998888888888889999999999876532110
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHH--hccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
...-+..+..+ ...+|++++|+|+++ ......+...+.+. ++|+++|+||+|+.....
T Consensus 70 ----------------~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~--~~p~ivv~NK~Dl~~~~~ 129 (274)
T 3i8s_A 70 ----------------TSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLEL--GIPCIVALNMLDIAEKQN 129 (274)
T ss_dssp ----------------CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHH--TCCEEEEEECHHHHHHTT
T ss_pred ----------------CCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhc--CCCEEEEEECccchhhhh
Confidence 00001112222 378999999999986 23345566667766 899999999999865322
Q ss_pred c--hhHH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 321 M--QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 321 ~--~~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
. .... ....+.+++++||++|.|+++++++|.+.+...
T Consensus 130 ~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 130 IRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp EEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 1 1111 134578999999999999999999999887644
No 33
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.86 E-value=2.9e-21 Score=169.19 Aligned_cols=157 Identities=19% Similarity=0.103 Sum_probs=110.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|++.+.. ......+++.......+..++. .+.+|||||+..+.....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 72 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQ----------- 72 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCG-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHH-----------
Confidence 5699999999999999999999665 2344444444443444555553 568999999987644332
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~ 317 (381)
.++..+|++++|+|+++..+... ..++..+.+.. .+.|+++|+||+|+..
T Consensus 73 ---------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 73 ---------------------------TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp ---------------------------GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred ---------------------------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 35578999999999987433333 23444444332 3789999999999975
Q ss_pred cccchhH---H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 318 KGIMQVS---E-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~~~~~~~---~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
....... . ....+.+++++||++|.|+++++++|.+.+.+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 4332211 1 2346779999999999999999999999887654
No 34
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=5.9e-21 Score=167.28 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=106.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
...+|+++|.+|||||||+|++.+........+.+ .....+.+++..+.+|||||+........
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------ 80 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG----FNVETLSYKNLKLNVWDLGGQTSIRPYWR------------ 80 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT----CCEEEEEETTEEEEEEEEC----CCTTGG------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc----cceEEEEECCEEEEEEECCCCHhHHHHHH------------
Confidence 35699999999999999999999876433332222 33344566778899999999976443222
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
.++..+|++++|+|++++.+..+ ..++..+... ..+.|+++|+||+|+.+.
T Consensus 81 --------------------------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 81 --------------------------CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp --------------------------GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred --------------------------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 45678999999999987655443 3344444432 358999999999999764
Q ss_pred ccchhH-HHh------hCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 GIMQVS-EFW------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~~~~~-~~~------~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
...+.. ... ..+++++++||++|+|+++++++|.+.+.+
T Consensus 135 ~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 135 LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 322222 111 123478999999999999999999998764
No 35
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.86 E-value=4.3e-21 Score=165.55 Aligned_cols=157 Identities=17% Similarity=0.144 Sum_probs=107.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|+|||||+|++.+.... ....+..+.+.....+..++ ..+.+|||||........
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~------------ 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT------------ 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH------------
Confidence 358999999999999999999987532 22233333333334445554 357899999987644322
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
..++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+...
T Consensus 70 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1g16_A 70 --------------------------TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123 (170)
T ss_dssp --------------------------HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC
T ss_pred --------------------------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC
Confidence 245678999999999987543333 34555555533 47899999999999543
Q ss_pred ccchh--HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 GIMQV--SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~~~~~--~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
..... ..+ ...+++++++||++|.|+++++++|.+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp CSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 22211 111 23577999999999999999999999988654
No 36
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=169.81 Aligned_cols=157 Identities=20% Similarity=0.139 Sum_probs=108.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
..++|+++|.+|||||||+|+|.+.... .... ..|.......+.+++..+.+|||||.......
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------------- 83 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQ-SQNI-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNL-------------- 83 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGC-CSSC-CCCSSEEEEEEECSSCEEEEEEECCSTTTGGG--------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CCCc-CCccceeEEEEEECCEEEEEEECCCCHHHHHH--------------
Confidence 4679999999999999999999987521 1222 23444455556777889999999998754331
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC----CCCeEEEEEeCccCC
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY----MDKFIILAVNKCESP 316 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~----~~~p~ivV~NK~Dl~ 316 (381)
...++..+|++++|+|++++.+..+ ..++..+.... .+.|+++|+||+|+.
T Consensus 84 ------------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 84 ------------------------WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp ------------------------GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred ------------------------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 1245688999999999987533332 23444443321 479999999999997
Q ss_pred CcccchhH-HHh------hCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 317 RKGIMQVS-EFW------SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 317 ~~~~~~~~-~~~------~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.....+.. ... ..+++++++||++|.|+++++++|.+.+++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 140 DAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp TCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred cCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHHh
Confidence 64322221 111 2356899999999999999999999987653
No 37
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.86 E-value=2.8e-21 Score=166.69 Aligned_cols=154 Identities=19% Similarity=0.206 Sum_probs=107.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcc-cccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~-~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..+|+++|.+|+|||||+|++.+.... ......+.+.... .+...+ ..+.+|||||+.+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dt~G~~~~~~------------- 70 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK--TVQYQNELHKFLIWDTAGLERFRA------------- 70 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE--EEEETTEEEEEEEEEECCSGGGGG-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEE--EEEECCeEEEEEEEcCCCchhhhc-------------
Confidence 358999999999999999999987632 1222333332222 233333 4688999999865332
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|++++.+..+ ..++..+... ....|+++|+||+|+.+
T Consensus 71 -------------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 71 -------------------------LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp -------------------------GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred -------------------------ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 22356688999999999987544443 3456666554 35789999999999976
Q ss_pred cccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 318 KGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 318 ~~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
..... ...+ ...+.+++++||++|.|+++++++|.+.+.
T Consensus 126 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 126 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 43221 1111 345778999999999999999999998764
No 38
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.86 E-value=5.1e-21 Score=166.78 Aligned_cols=159 Identities=16% Similarity=0.131 Sum_probs=111.6
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
...++|+++|.+|||||||+|+|++.. ......+++.......+..++. .+.+|||||..+....
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~----------- 73 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM----------- 73 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH-----------
Confidence 345799999999999999999999875 3344555554444444555553 5789999998764331
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHH-h-CCCCeEEEEEeCccC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK-N-YMDKFIILAVNKCES 315 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~-~-~~~~p~ivV~NK~Dl 315 (381)
...++..+|++++|+|++++.+... ..++..+.+ . ..+.|+++|+||+|+
T Consensus 74 ---------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 74 ---------------------------REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp ---------------------------HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred ---------------------------HHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 2245678999999999987433322 234444422 1 247899999999999
Q ss_pred CCcccchh---HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 316 PRKGIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 316 ~~~~~~~~---~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
........ ..+ ...+.+++++||++|.|+++++++|.+.+.+..
T Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 127 ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp GGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred ccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 76432211 111 345778999999999999999999999887554
No 39
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.86 E-value=9e-21 Score=162.99 Aligned_cols=152 Identities=20% Similarity=0.203 Sum_probs=106.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
.+|+++|.+|||||||+|++.+.... ...| |.......+...+..+.+|||||+....
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------------ 58 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------------------ 58 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSSCEEEEEECCCCGGGH------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECCEEEEEEEcCCChhhH------------------
Confidence 37899999999999999999876532 2222 3334444566677889999999986421
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHH--hCCCCeEEEEEeCccCCCccc
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK--NYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~--~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
.....++..+|++++|+|++++.+... ..++..+.. ...+.|+++|+||+|+.+...
T Consensus 59 --------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 118 (164)
T 1r8s_A 59 --------------------PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN 118 (164)
T ss_dssp --------------------HHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred --------------------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC
Confidence 134456789999999999987644333 233433332 234899999999999976432
Q ss_pred chhHH-H------hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 321 MQVSE-F------WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 321 ~~~~~-~------~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
..... . ...+++++++||++|.|+++++++|.+.+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 119 AAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred HHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence 22111 1 1134578999999999999999999987754
No 40
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.85 E-value=5.6e-21 Score=167.92 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=110.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCce--EEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|.+... .....+++.......+..++.. +.+|||||..+...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------- 67 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------------- 67 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT--------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH--------------
Confidence 45899999999999999999997763 3445555554444455555654 66899999876443
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|++++.+... ..++..+... ..+.|+++|+||+|+..
T Consensus 68 ------------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 68 ------------------------MRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp ------------------------THHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred ------------------------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 22245678999999999987543333 3344444442 24799999999999975
Q ss_pred cccchhH--H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 318 KGIMQVS--E-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~~~~~~~--~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
....... . ....+.+++++||++|.|+++++++|.+.+.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 168 (189)
T 4dsu_A 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK 168 (189)
T ss_dssp CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence 4322211 1 1345789999999999999999999999886543
No 41
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.85 E-value=1.4e-20 Score=166.81 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=106.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC-------------------------------
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE------------------------------- 210 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~------------------------------- 210 (381)
..++|+++|.+|||||||+|+|++.... ....+.++.......+.+++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 4679999999999999999999987532 11122122222222233332
Q ss_pred --------ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeC
Q 016883 211 --------HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDG 282 (381)
Q Consensus 211 --------~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~ 282 (381)
..+.+|||||+..... .+..++..+|++++|+|+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~--------------------------------------~~~~~~~~~d~~i~v~D~ 126 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYAS--------------------------------------IVPLYYRGATCAIVVFDI 126 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTT--------------------------------------THHHHHTTCSEEEEEEET
T ss_pred cccCccceeEEEEEECCCcHHHHH--------------------------------------HHHHHhcCCCEEEEEEEC
Confidence 5688999999765432 233567899999999999
Q ss_pred CCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCccc--chhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 283 QAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 283 ~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+++.+..+ ..++..+.... +.|+++|+||+|+..... .+...+ ...+.+++++||++|.|+++++++|.+.+.+
T Consensus 127 ~~~~s~~~~~~~~~~i~~~~-~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 127 SNSNTLDRAKTWVNQLKISS-NYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp TCHHHHHHHHHHHHHHHHHS-CCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhC-CCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 97654444 34555555533 599999999999322221 111122 3457799999999999999999999887754
No 42
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.85 E-value=7.8e-21 Score=169.69 Aligned_cols=157 Identities=15% Similarity=0.108 Sum_probs=111.9
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.+|||||||+|+|.+... ...+.+++.......+..++. .+.+|||||..+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 77 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAA------------- 77 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHH-------------
Confidence 456999999999999999999998763 344444544444444555554 678999999864321
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESP 316 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~ 316 (381)
....++..+|++++|+|+++..+... ..++..+.... .+.|+++|+||+|+.
T Consensus 78 -------------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 132 (206)
T 2bov_A 78 -------------------------IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132 (206)
T ss_dssp -------------------------HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred -------------------------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence 33456678999999999987543333 34555555543 379999999999997
Q ss_pred Ccccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 317 RKGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 317 ~~~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
...... ...+ ...+.+++++||++|.|+++++++|.+.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 178 (206)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence 643221 1111 23567899999999999999999999887653
No 43
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.85 E-value=3.9e-21 Score=164.88 Aligned_cols=154 Identities=19% Similarity=0.142 Sum_probs=106.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||+|++.+.... .....++.......+..++. .+.+|||||..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------------- 66 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS--------------- 66 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHH---------------
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHH---------------
Confidence 48999999999999999999977532 23333333333344455554 378999999764321
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|+.++.+..+ ..++..+.+.. .+.|+++|+||+|+.+.
T Consensus 67 -----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 67 -----------------------MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp -----------------------HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred -----------------------HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 23356678999999999987543332 23444444432 47999999999998654
Q ss_pred ccchh---HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 GIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~~~~---~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
..... ..+ ...+.+++++||++|.|+++++++|.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 124 REVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp CCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 32211 111 2347799999999999999999999987753
No 44
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.85 E-value=4.2e-21 Score=169.90 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=108.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.+|||||||+|+|++..... ...+..+.......+...+ ..+.+|||||........
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 88 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT----------- 88 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG-----------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH-----------
Confidence 35799999999999999999999876321 1122122222222233333 468899999987654322
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~ 317 (381)
..++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+..
T Consensus 89 ---------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 89 ---------------------------TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLED 141 (189)
T ss_dssp ---------------------------GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred ---------------------------HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 245678999999999987543333 34555565532 4799999999999976
Q ss_pred cccchh---HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 318 KGIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 318 ~~~~~~---~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
...... ..+ ...+++++++||++|.|+++++++|.+.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 142 ERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEK 186 (189)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 432211 111 23577999999999999999999999887643
No 45
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.85 E-value=8e-21 Score=163.38 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=105.1
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|||||||+|++.+... ......++.......+..++ ..+.+|||||+.....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------------- 66 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA--------------- 66 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT---------------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH---------------
Confidence 4899999999999999999998653 22333333333223333443 3578999999875432
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|++++.+... ..++..+... ..+.|+++|+||+|+.+.
T Consensus 67 -----------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 67 -----------------------MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp -----------------------HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred -----------------------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc
Confidence 23355678999999999987533332 3344444442 248999999999999764
Q ss_pred ccch---hHHH-hhC-CCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 319 GIMQ---VSEF-WSL-GFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~~~~---~~~~-~~~-~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.... ...+ ... +.+++++||++|.|+++++++|.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 124 RVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 3221 1111 223 678999999999999999999988764
No 46
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.85 E-value=7.1e-21 Score=166.72 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=110.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|++... .....+++.......+..++. .+.+|||||+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------------- 80 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--------------- 80 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH---------------
Confidence 46999999999999999999998763 334444444444444455553 67899999986432
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~ 317 (381)
.....++..+|++++|+|+++..+... ..++..+.... .+.|+++|+||+|+..
T Consensus 81 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 81 -----------------------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137 (187)
T ss_dssp -----------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGG
T ss_pred -----------------------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 133456778999999999987543333 34445554433 3799999999999976
Q ss_pred cccch---hHH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 318 KGIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 318 ~~~~~---~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
..... ... ....+.+++++||++|.|+++++++|.+.+.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 182 (187)
T 2a9k_A 138 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRAR 182 (187)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 43221 111 234577999999999999999999999887643
No 47
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=5.5e-21 Score=169.62 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=111.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
...+|+++|.+|||||||+|++.+... ...+.+|+.......+..++ ..+.+|||||+.++.....
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~---------- 84 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP---------- 84 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH----------
Confidence 456999999999999999999998753 33444444444333445555 4578999999976543222
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
.++..+|++++|+|++++.+.... .|+..+.+...+.|+++|+||+|+..
T Consensus 85 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 85 ----------------------------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp ----------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred ----------------------------HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 456789999999999875444332 46677777666899999999999976
Q ss_pred cc------------cch---hHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 318 KG------------IMQ---VSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 318 ~~------------~~~---~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.. ... ...+ ...+. +++++||++|+|+++++++|.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 42 111 1111 22355 8999999999999999999988764
No 48
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=4.4e-21 Score=170.48 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=108.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcc-cccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~-~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.++|+++|.+|||||||+|+|++.... ......+.+.......+...+..+.+|||||..+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 87 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS--------------- 87 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG---------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh---------------
Confidence 469999999999999999999987632 2333333333332222222344688999999865432
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|++++.+... ..++..+.+.. .+.|+++|+||+|+.+..
T Consensus 88 -----------------------~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 144 (192)
T 2fg5_A 88 -----------------------LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR 144 (192)
T ss_dssp -----------------------GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC
T ss_pred -----------------------hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 22356688999999999987644333 34555555532 479999999999997532
Q ss_pred cc---hhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 320 IM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 320 ~~---~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.. +...+ ...+.+++++||++|.|+++++++|.+.+.+.
T Consensus 145 ~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 145 EVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp CSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred ccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 21 11122 34577899999999999999999999987654
No 49
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=7.3e-21 Score=170.47 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=101.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|++|||||||+|++.+........ |.......+.+++..+.+|||||+......+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------------- 86 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELTIAGMTFTTFDLGGHIQARRVW-------------- 86 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------C----CCCCSCEEEEETTEEEEEEEECC----CCGG--------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCC----CCCceeEEEEECCEEEEEEECCCcHhhHHHH--------------
Confidence 4589999999999999999999876433222 2223345567778889999999987644322
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~~ 319 (381)
..++..+|++++|+|++++.+... ..++..+.+. ..++|+++|+||+|+....
T Consensus 87 ------------------------~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 142 (198)
T 1f6b_A 87 ------------------------KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 142 (198)
T ss_dssp ------------------------GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC
T ss_pred ------------------------HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccC
Confidence 245678999999999987544333 3344444331 2489999999999997632
Q ss_pred cchhH-HHhh------------------CCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 320 IMQVS-EFWS------------------LGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 320 ~~~~~-~~~~------------------~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
..+.. .... .+.+++++||++|+|+++++++|.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 143 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred CHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 22211 1111 234789999999999999999998754
No 50
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.85 E-value=5.3e-21 Score=167.13 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=108.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|+|||||+|++++...... ..+..+.......+.+.+ ..+.+|||||+.....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------- 76 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEF-QESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS-------------- 76 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTT-SCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG--------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCc-CCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh--------------
Confidence 46999999999999999999998764221 122222222222333443 3688999999865332
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+...
T Consensus 77 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 77 ------------------------LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp ------------------------GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred ------------------------hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 22356688999999999987544333 44555555542 47899999999999764
Q ss_pred ccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.... ...+ ...+++++++||++|+|+++++++|.+.+.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 133 RKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC---
T ss_pred ccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3221 1112 245778999999999999999999999887654
No 51
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.85 E-value=8e-21 Score=167.51 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=107.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
..++|+++|.+|||||||+|++.+........+.+ .....+.+++..+.+|||||+....
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~l~i~Dt~G~~~~~---------------- 74 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG----FNIKSVQSQGFKLNVWDIGGQRKIR---------------- 74 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT----EEEEEEEETTEEEEEEECSSCGGGH----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC----eEEEEEEECCEEEEEEECCCCHHHH----------------
Confidence 45799999999999999999999876433332222 2233455667889999999986421
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
.....++..+|++++|+|++++.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 75 ----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 75 ----------------------PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp ----------------------HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred ----------------------HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 134466789999999999987544333 2333333221 247999999999999765
Q ss_pred ccchhH-HH------hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 GIMQVS-EF------WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~~~~~-~~------~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
...+.. .. ...+++++++||++|+|+++++++|.+.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred CCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 332221 11 1224578999999999999999999987754
No 52
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.85 E-value=4.4e-21 Score=165.73 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=104.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|++++.... ....+..+.......+..++. .+.+|||||..+.....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------------ 72 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG------------ 72 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhH------------
Confidence 459999999999999999999977532 222232333333333444443 57899999986543321
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
..++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+.+.
T Consensus 73 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 73 --------------------------PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp --------------------------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred --------------------------HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 235578999999999987543333 33555554422 47999999999999764
Q ss_pred ccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.... ...+ ...+.+++++||++|.|+++++++|.+.+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 3221 1111 3457789999999999999999999987754
No 53
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.85 E-value=5.4e-21 Score=164.63 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=107.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||+|+|.+.... ....+..+.+.....+..++ ..+.+|||||..+.....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------ 71 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFT-KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT------------ 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH------------
Confidence 458999999999999999999987532 11122222333333344444 368899999986544322
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
..++..+|++++|+|++++.+... ..++..+.....+.|+++|+||+|+....
T Consensus 72 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 125 (168)
T 1z2a_A 72 --------------------------KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDS 125 (168)
T ss_dssp --------------------------HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGC
T ss_pred --------------------------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCccc
Confidence 245678999999999987543332 34555555544589999999999997643
Q ss_pred cc--hh-HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 320 IM--QV-SEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 320 ~~--~~-~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.. +. ..+ ...+.+++++||++|.|+++++++|.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp SSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 22 11 111 235779999999999999999999988764
No 54
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.85 E-value=5.6e-21 Score=166.24 Aligned_cols=155 Identities=17% Similarity=0.107 Sum_probs=107.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCc-ccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGV-TRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~t-t~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
..++|+++|.+|||||||+|+|.+.... .....+ +.......+..++ ..+.+|||||..+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------- 78 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR------------- 78 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC-------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh-------------
Confidence 3569999999999999999999987632 222222 2222222334444 367899999975432
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESP 316 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~ 316 (381)
.....++..+|++++|+|++++.+..+ ..++..+.... .+.|+++|+||+|+.
T Consensus 79 -------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 79 -------------------------AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp -------------------------HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred -------------------------hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 134466789999999999987544333 34555555432 489999999999996
Q ss_pred Ccccc---hhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 317 RKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 317 ~~~~~---~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
..... +...+ ...+.+++++||++|.|+++++++|.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 54322 11122 345789999999999999999999988764
No 55
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.85 E-value=6.7e-21 Score=169.26 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=112.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCce--EEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||+|++++... .....+++.......+..++.. +.+|||||.........
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 89 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRP----------- 89 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGG-----------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhH-----------
Confidence 46999999999999999999998763 2333334433333344455544 58999999876543222
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
.++..+|++++|+|++++.+..+ ..|+..+.....+.|+++|+||+|+...
T Consensus 90 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 90 ---------------------------LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred ---------------------------hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 45678999999999998654444 3566777766678999999999999753
Q ss_pred cc--c--hh-HH-HhhCCCc-eEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 319 GI--M--QV-SE-FWSLGFS-PLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 319 ~~--~--~~-~~-~~~~~~~-~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.. . +. .. ....+.+ ++++||++|.|+++++++|.+.+.+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp TTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred CCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 11 1 11 11 1234666 999999999999999999999876543
No 56
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.85 E-value=2.2e-20 Score=164.99 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=110.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
...+|+++|.+|||||||+|++.+...... .+ |.......+..++..+.+|||||+.+......
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~------------ 84 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTT--VP--TVGVNLETLQYKNISFEVWDLGGQTGVRPYWR------------ 84 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEE--CS--STTCCEEEEEETTEEEEEEEECCSSSSCCCCS------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCc--CC--CCceEEEEEEECCEEEEEEECCCCHhHHHHHH------------
Confidence 356999999999999999999987764322 22 22333445666788899999999976554332
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~ 318 (381)
.++..+|++++|+|++++.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 85 --------------------------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 85 --------------------------CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp --------------------------SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred --------------------------HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 34578999999999998655443 2333333322 247999999999999765
Q ss_pred ccchhHH-H------hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 GIMQVSE-F------WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~~~~~~~-~------~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
...+... . ...+++++++||++|.|+++++++|.+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 139 ASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 3222111 1 12345799999999999999999999988654
No 57
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.85 E-value=7e-21 Score=164.01 Aligned_cols=155 Identities=19% Similarity=0.167 Sum_probs=105.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccc-cCCCCcccccceeeEEeC--CceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIV-VDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~-~~~~~tt~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..+|+++|.+|||||||+|+|++...... ....+.+... ..+..+ +..+.+|||||+.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~G~~~~~~------------- 70 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT--QTVCLDDTTVKFEIWDTAGQERYHS------------- 70 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE--EEEEETTEEEEEEEEEECCSGGGGG-------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE--EEEEECCEEEEEEEEeCCCcHHhhh-------------
Confidence 45899999999999999999997653221 1122222222 223333 34688999999865322
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|++++.+..+ ..++..+... ..+.|+++|+||+|+..
T Consensus 71 -------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 71 -------------------------LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp -------------------------GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -------------------------hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 23356788999999999987543333 3455555443 35789999999999865
Q ss_pred cccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 318 KGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 318 ~~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
..... ...+ ...+.+++++||++|.|+++++++|.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 43221 1111 3457789999999999999999999987643
No 58
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.85 E-value=7.6e-21 Score=178.25 Aligned_cols=157 Identities=26% Similarity=0.368 Sum_probs=119.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|.+|||||||+|+|++... .++.++++|.......+...+..+.+|||||+........+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------------ 71 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID------------ 71 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH------------
Confidence 35899999999999999999999864 57888999988888778877889999999999876543320
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHh--ccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
+..+..++ ..+|++++|+|+++. .....+...+.+. ++|+++|+||+|+.....
T Consensus 72 --------------------e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~--~~pvilv~NK~Dl~~~~~ 127 (258)
T 3a1s_A 72 --------------------EKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEM--EKKVILAMTAIDEAKKTG 127 (258)
T ss_dssp --------------------HHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTT--TCCEEEEEECHHHHHHTT
T ss_pred --------------------HHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhc--CCCEEEEEECcCCCCccc
Confidence 01122333 579999999999863 2334455566555 899999999999864321
Q ss_pred c--hhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 321 M--QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 321 ~--~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
. ....+ ...+++++++||++|.|++++++++.+.++
T Consensus 128 i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 128 MKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 1 11122 345789999999999999999999999876
No 59
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.85 E-value=8.7e-21 Score=167.06 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=109.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccc-eeeEEeCC-----------ceEEEEEcCCCCCccCCCc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRM-YGRSFWGE-----------HEFMLVDTGGVLNVSKSQP 229 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~-~~~~~~~~-----------~~~~liDTPG~~~~~~~~~ 229 (381)
..++|+++|.+|||||||+|+|.+.... ....+..+.+.. ...+...+ ..+.+|||||+....
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFN-SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR---- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH----
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCC-cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH----
Confidence 3569999999999999999999976532 111121111111 22233333 368899999985421
Q ss_pred hhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeE
Q 016883 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFI 306 (381)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ 306 (381)
.....++..+|++++|+|++++.+..+ ..++..+.... .+.|+
T Consensus 85 ----------------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 130 (195)
T 3bc1_A 85 ----------------------------------SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDI 130 (195)
T ss_dssp ----------------------------------HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCE
T ss_pred ----------------------------------HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 244567789999999999987544444 45566665533 48999
Q ss_pred EEEEeCccCCCcccch--h-HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 307 ILAVNKCESPRKGIMQ--V-SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 307 ivV~NK~Dl~~~~~~~--~-~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
++|+||+|+....... . ..+ ...+.+++++||++|.|+++++++|.+.+.+.
T Consensus 131 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 131 VLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999997532221 1 111 23577999999999999999999999887643
No 60
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.85 E-value=9.4e-21 Score=163.68 Aligned_cols=157 Identities=18% Similarity=0.149 Sum_probs=101.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|++.+....... .+.++.+.....+..++. .+.+|||||..+....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------------- 67 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH-EMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW------------- 67 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc-cCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh-------------
Confidence 358999999999999999999876532222 222344444444555553 5679999999754321
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+.+
T Consensus 68 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 68 ------------------------LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp --------------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred ------------------------hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 11134567999999999987433332 34455554433 3799999999999975
Q ss_pred cccchhH---H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 318 KGIMQVS---E-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 318 ~~~~~~~---~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
....... . ....+.+++++||++|.|++++++++.+.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 124 SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence 3322111 1 23457799999999999999999999988754
No 61
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.85 E-value=2.2e-20 Score=167.50 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=112.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|.+.... ....+..+.......+.+++. .+.+|||||..+......
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 75 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITS----------- 75 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCG-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHH-----------
Confidence 469999999999999999999987632 222333333343344555554 688999999876544322
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
.++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+...
T Consensus 76 ---------------------------~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 76 ---------------------------SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp ---------------------------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred ---------------------------HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 45678999999999987544433 34555555432 47999999999999764
Q ss_pred ccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.... ...+ ...+.+++++||++|.|+++++++|.+.+.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp CCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 3221 1112 345789999999999999999999998776543
No 62
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.85 E-value=2e-20 Score=166.71 Aligned_cols=156 Identities=19% Similarity=0.179 Sum_probs=106.1
Q ss_pred CCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 160 ~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
.....+|+++|.+|||||||+|++++...... . .|.......+...+..+.+|||||..+...
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~--~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------- 88 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTT--I--PTIGFNVETVEYKNICFTVWDVGGQDKIRP------------- 88 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEE--E--EETTEEEEEEEETTEEEEEEECC-----CT-------------
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCcccc--C--CcCceeEEEEEECCEEEEEEECCCCHhHHH-------------
Confidence 34467999999999999999999998764321 1 233344445666778899999999975433
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESP 316 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~ 316 (381)
....++..+|++++|+|++++.+... ..++..+... ..+.|+++|+||+|+.
T Consensus 89 -------------------------~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 143 (192)
T 2b6h_A 89 -------------------------LWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMP 143 (192)
T ss_dssp -------------------------THHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred -------------------------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCC
Confidence 22345679999999999987644333 2344333321 2479999999999997
Q ss_pred CcccchhHH-H------hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 317 RKGIMQVSE-F------WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 317 ~~~~~~~~~-~------~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+....+... . ...+++++++||++|.|+++++++|.+.+.+
T Consensus 144 ~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 144 NAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp TCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHhc
Confidence 653222211 1 1134578999999999999999999987753
No 63
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.85 E-value=1.6e-20 Score=167.05 Aligned_cols=150 Identities=19% Similarity=0.152 Sum_probs=106.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|.+|||||||+|++.+....... .|.......+.+++..+.+|||||+........
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------- 85 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQ----PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK------------- 85 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCC----CCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG-------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccc----cCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH-------------
Confidence 459999999999999999999987643222 233334556677888899999999976443221
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHH--hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK--NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~--~~~~~p~ivV~NK~Dl~~~~ 319 (381)
.++..+|++++|+|++++.+... ..++..+.+ ...+.|+++|+||+|+....
T Consensus 86 -------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 140 (190)
T 1m2o_B 86 -------------------------DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 140 (190)
T ss_dssp -------------------------GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC
T ss_pred -------------------------HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC
Confidence 35578999999999997654433 334444433 12589999999999997632
Q ss_pred cchhHH-Hhh-------------CCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 320 IMQVSE-FWS-------------LGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 320 ~~~~~~-~~~-------------~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
..+... ... .+.+++++||++|+|+++++++|.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 141 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 222221 111 23478999999999999999998764
No 64
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.85 E-value=1.2e-20 Score=167.31 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=109.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
...+|+++|.+|||||||+|+|++...... ..+..+.......+..++ ..+.+|||||........
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~----------- 87 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT----------- 87 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhH-----------
Confidence 356999999999999999999998764221 222223333333444555 367899999987654322
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~ 317 (381)
..++..+|++++|+|++++.+..+ ..++..+... ..+.|+++|+||+|+..
T Consensus 88 ---------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 88 ---------------------------RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp ---------------------------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred ---------------------------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 246678999999999987543333 3455555543 24799999999999975
Q ss_pred cccchh---HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 318 KGIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~~~~~~---~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
...... ..+ ...+.+++++||++|.|+++++++|.+.+.+..
T Consensus 141 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 141 RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 332211 111 245779999999999999999999998776543
No 65
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=168.56 Aligned_cols=157 Identities=14% Similarity=0.082 Sum_probs=109.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.+|||||||+|++++.. ....+.+|+.......+..++. .+.+|||||+.+....+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 86 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP---------- 86 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGG----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhH----------
Confidence 46699999999999999999999876 3344455555444444555664 466999999976544322
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
.++..+|++++|+|++++.+..+. .|+..+.....+.|+++|+||+|+..
T Consensus 87 ----------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 87 ----------------------------LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp ----------------------------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred ----------------------------hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 356789999999999876554443 46666776666899999999999975
Q ss_pred cc------------cc---hhHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 318 KG------------IM---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 318 ~~------------~~---~~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.. .. +...+ ...+. +++++||++|.|+++++++|.+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp CHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred chhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 31 11 11111 22355 899999999999999999999877643
No 66
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.85 E-value=4e-21 Score=168.02 Aligned_cols=156 Identities=16% Similarity=0.101 Sum_probs=102.0
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
....+|+++|.+|||||||+|++.+... .....+++.......+..++ ..+.+|||||+.+......
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------- 74 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP--------- 74 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTTTTTGG---------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHH---------
Confidence 3467999999999999999999997652 23333333322222222333 3456999999876543222
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESP 316 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~ 316 (381)
.++..+|++++|+|++++.+..+. .|+..+.....+.|+++|+||+|+.
T Consensus 75 -----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 75 -----------------------------LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR 125 (182)
T ss_dssp -----------------------------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred -----------------------------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh
Confidence 456789999999999875444442 4667777655689999999999986
Q ss_pred Ccccc-------------hhHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 317 RKGIM-------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 317 ~~~~~-------------~~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
+.... +...+ ...+. +++++||++|+|+++++++|.+.+.
T Consensus 126 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 126 DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 64321 11111 23454 8999999999999999999988764
No 67
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=1.1e-20 Score=162.70 Aligned_cols=154 Identities=19% Similarity=0.230 Sum_probs=105.6
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|+|||||+|++.+.... ....+..+.......+.+++. .+.+|||||......
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------------- 67 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS--------------- 67 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG---------------
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh---------------
Confidence 48999999999999999999977532 112222222222233344443 688999999764322
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRKG 319 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|++++.+..+ ..++..+.... .+.|+++|+||+|+....
T Consensus 68 -----------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (170)
T 1ek0_A 68 -----------------------LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124 (170)
T ss_dssp -----------------------GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSS
T ss_pred -----------------------hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccc
Confidence 23356789999999999987544333 34555555432 589999999999997541
Q ss_pred ---cch-h--HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 320 ---IMQ-V--SEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 320 ---~~~-~--~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
... . ..+ ...+.+++++||++|.|+++++++|.+.+.
T Consensus 125 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp CCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 111 1 111 235779999999999999999999988764
No 68
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.85 E-value=1.1e-20 Score=167.43 Aligned_cols=154 Identities=16% Similarity=0.080 Sum_probs=107.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|.+|||||||+|+|++.... .... .|.......+...+..+.+|||||+.+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------------- 82 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFN--EDMI-PTVGFNMRKITKGNVTIKLWDIGGQPRFRS---------------- 82 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--CSCC-CCCSEEEEEEEETTEEEEEEEECCSHHHHT----------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCC--CccC-CCCceeEEEEEeCCEEEEEEECCCCHhHHH----------------
Confidence 569999999999999999999977532 1111 233333344566778899999999864322
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~~ 319 (381)
....++..+|++++|+|++++.+... ..++..+... ..+.|+++|+||+|+....
T Consensus 83 ----------------------~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 140 (188)
T 1zd9_A 83 ----------------------MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 140 (188)
T ss_dssp ----------------------THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC
T ss_pred ----------------------HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC
Confidence 23356689999999999987544333 2344433331 2589999999999997643
Q ss_pred cchhH-HH------hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 320 IMQVS-EF------WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 320 ~~~~~-~~------~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
..+.. .. ...+.+++++||++|.|+++++++|.+.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 141 DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred CHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 22211 11 1234578999999999999999999988764
No 69
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.85 E-value=7.8e-21 Score=169.03 Aligned_cols=157 Identities=19% Similarity=0.152 Sum_probs=106.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.+|||||||+|+|++..... ...+..+.+.....+.+++ ..+.+|||||..+..
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------------- 89 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCE-ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN-------------- 89 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCc-CCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH--------------
Confidence 35689999999999999999999876421 2223233333334445555 367899999975421
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~ 317 (381)
.....++..+|++++|+|++++.+..+ ..|+..+.... .+.|+++|+||+|+..
T Consensus 90 ------------------------~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 90 ------------------------SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp ------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred ------------------------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 234466788999999999987544443 34555555532 3799999999999975
Q ss_pred cccch---hHHHh-h-CCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 318 KGIMQ---VSEFW-S-LGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 318 ~~~~~---~~~~~-~-~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
..... ...+. . .+.+++++||++|.|+++++++|.+.+.+
T Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 146 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 43221 11222 2 36789999999999999999999987754
No 70
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.84 E-value=2.5e-21 Score=175.89 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=115.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCC-cccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
...++|+++|.+|||||||+|+++... ......+.+++.......+...+..+.+|||||.........
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 82 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD---------- 82 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCH----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHH----------
Confidence 345799999999999999999955432 233455555565554433333345688999999876544222
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
.++..+|++++|+|++++.+..+ ..|+..+.+...+.|+++|+||+|+.+.
T Consensus 83 ----------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 83 ----------------------------GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp ----------------------------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred ----------------------------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 45678999999999997544433 3566666666568999999999999765
Q ss_pred ccchhH-H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 319 GIMQVS-E-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 319 ~~~~~~-~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
...... . ....+.+++++||++|.|+++++++|.+.+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 135 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp SSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred cccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 432221 1 1345679999999999999999999999876544
No 71
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.84 E-value=9.2e-21 Score=164.86 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=108.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|++++.... ....+.++.+.....+.+++. .+.+|||||......
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------------- 78 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------------- 78 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG--------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH--------------
Confidence 358999999999999999999976532 222333444444444555553 688999999765332
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|++++.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 79 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 79 ------------------------LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp ------------------------GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred ------------------------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 12245678999999999987433222 3344444432 247999999999999754
Q ss_pred ccchh---HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 GIMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~~~~---~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
..... .. ....+.+++++||++|.|+++++++|.+.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp CCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 32211 11 23457799999999999999999999987754
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.84 E-value=3.6e-20 Score=158.43 Aligned_cols=154 Identities=17% Similarity=0.196 Sum_probs=106.9
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.+|+++|.+|+|||||+|++.+... .....+++.......+..++. .+.+|||||..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~--------------- 66 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA--------------- 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCH---------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhH---------------
Confidence 4899999999999999999997753 223333333333333444443 468999999865321
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|+++..+..+ ..++..+.... .+.|+++|+||+|+.+.
T Consensus 67 -----------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 67 -----------------------MRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp -----------------------HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred -----------------------HHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 23346678999999999986543333 34555555432 37999999999998763
Q ss_pred ccch--hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 GIMQ--VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~~~--~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.... ...+ ...+.+++++||++|.|+++++++|.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 124 TVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 3221 1111 2357799999999999999999999987753
No 73
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=1.6e-20 Score=168.64 Aligned_cols=159 Identities=17% Similarity=0.132 Sum_probs=111.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.+|||||||+|+|++... .....+.++.+.....+.+++ ..+.+|||||+.......
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 86 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT----------- 86 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH-----------
Confidence 356999999999999999999997753 222333344444444455566 468999999987544322
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~ 317 (381)
..++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+..
T Consensus 87 ---------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 87 ---------------------------TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp ---------------------------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred ---------------------------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 245688999999999987543332 34555555533 3789999999999954
Q ss_pred cccchh--HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 318 KGIMQV--SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~~~~~~--~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
...... ..+ ...+++++++||++|.|+++++++|.+.+.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 322111 111 234679999999999999999999998876543
No 74
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.84 E-value=6.1e-21 Score=166.27 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=108.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC---ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~---~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..+|+++|.+|||||||+|+|.+.... ....+.++.+.....+.+++ ..+.+|||||......
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------------- 71 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK------------- 71 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT-------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc-------------
Confidence 469999999999999999999987532 11112222333344455555 5789999999875433
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC---CCCe-EEEEEeCcc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY---MDKF-IILAVNKCE 314 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~---~~~p-~ivV~NK~D 314 (381)
....++..+|++++|+|++++.+..+ ..++..+.... .+.| +++|+||+|
T Consensus 72 -------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 72 -------------------------MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp -------------------------THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred -------------------------hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 22356789999999999987544333 34555554421 2455 899999999
Q ss_pred CCCcccc---hhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 315 SPRKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 315 l~~~~~~---~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+...... +...+ ...+++++++||++|.|+++++++|.+.+.+..
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp GGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred cccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9753221 11111 235779999999999999999999999876543
No 75
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.84 E-value=1.1e-20 Score=165.89 Aligned_cols=159 Identities=15% Similarity=0.070 Sum_probs=111.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|++++.... ....+..+.......+..++ ..+.+|||||+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------------- 73 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR--------------- 73 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH---------------
Confidence 569999999999999999999987632 22233333333344445555 468899999975421
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
.....++..+|++++|+|++++.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 74 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 74 -----------------------SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp -----------------------HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred -----------------------HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 134456788999999999987544333 3355544443 247999999999999653
Q ss_pred ccch---hHH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 319 GIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 319 ~~~~---~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
.... ... ....+.+++++||++|.|++++++++.+.+.+...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 131 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhh
Confidence 3221 111 13457899999999999999999999988765443
No 76
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.84 E-value=1.2e-20 Score=164.28 Aligned_cols=156 Identities=14% Similarity=0.093 Sum_probs=107.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|++++.... ....+..+.......+.+++. .+.+|||||.....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------- 70 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR--------------- 70 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH---------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh---------------
Confidence 469999999999999999999976532 222233333333344455553 68899999975422
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-----CCCeEEEEEeCcc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-----MDKFIILAVNKCE 314 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-----~~~p~ivV~NK~D 314 (381)
.....++..+|++++|+|++++.+..+ ..++..+.... .+.|+++|+||+|
T Consensus 71 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 127 (177)
T 1wms_A 71 -----------------------SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127 (177)
T ss_dssp -----------------------HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTT
T ss_pred -----------------------hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCc
Confidence 123356788999999999987544333 33555554422 4789999999999
Q ss_pred CCCcccc--hhHHH-h-hCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 315 SPRKGIM--QVSEF-W-SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 315 l~~~~~~--~~~~~-~-~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+...... +...+ . ..+.+++++||++|.|+++++++|.+.+.+
T Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 128 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp CSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9743221 11122 1 356799999999999999999999988764
No 77
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.84 E-value=4.1e-21 Score=191.92 Aligned_cols=165 Identities=22% Similarity=0.266 Sum_probs=122.8
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc-eEEEEEcCCCCCccCCCchhhhhhhh
Q 016883 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAI 237 (381)
Q Consensus 159 ~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~~~liDTPG~~~~~~~~~~~~~~~~~ 237 (381)
+....++|+++|++|+|||||+|+|++.....++..+++|.+.....+.+.+. .+.+|||||+.++.......
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~------ 103 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLR------ 103 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCC------
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHH------
Confidence 44557799999999999999999999987666788889999888888877766 89999999998765543311
Q ss_pred hhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
.+.+..++..+|++++|+|+ +....+..++..+.+. ++|+++|+||+|+..
T Consensus 104 -------------------------~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~--~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 104 -------------------------VEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM--EIPFVVVVNKIDVLG 154 (423)
T ss_dssp -------------------------HHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT--TCCEEEECCCCTTTT
T ss_pred -------------------------HHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc--CCCEEEEEeCcCCCC
Confidence 12456778899999999998 6677778899988887 999999999999987
Q ss_pred cccchhHHH--hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 318 KGIMQVSEF--WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 318 ~~~~~~~~~--~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
....+.... ...+.+++++||++|.|+++++++|.+.+++.
T Consensus 155 ~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 155 EKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 655433322 23467999999999999999999999998544
No 78
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.84 E-value=3e-20 Score=162.97 Aligned_cols=156 Identities=14% Similarity=0.089 Sum_probs=108.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCce--EEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.+|||||||+|++.+... .....+++..........++.. +.+|||||.......
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------------ 82 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAM------------ 82 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSS------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHH------------
Confidence 456999999999999999999997642 2333334433334444555554 557999998654331
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHH--hCCCCeEEEEEeCccCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK--NYMDKFIILAVNKCESP 316 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~--~~~~~p~ivV~NK~Dl~ 316 (381)
...++..+|++++|+|++++.+... ..++..+.+ ...+.|+++|+||+|+.
T Consensus 83 --------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 83 --------------------------REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp --------------------------HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred --------------------------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 2245678999999999997533332 334444433 12478999999999997
Q ss_pred CcccchhH---H-HhhCCCceEEEecC-CCCCHHHHHHHHHHHhhh
Q 016883 317 RKGIMQVS---E-FWSLGFSPLPISAI-SGTGTGELLDLVCSELKK 357 (381)
Q Consensus 317 ~~~~~~~~---~-~~~~~~~~~~vSA~-~g~gi~~l~~~i~~~l~~ 357 (381)
........ . ....+.+++++||+ +|.|+++++++|.+.+.+
T Consensus 137 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 137 HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred hccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 63322211 1 13356899999999 999999999999988754
No 79
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.84 E-value=6.1e-21 Score=170.80 Aligned_cols=163 Identities=20% Similarity=0.133 Sum_probs=108.8
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe--CCceEEEEEcCCCCCccCCCchhhhhhh
Q 016883 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (381)
Q Consensus 159 ~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~~~liDTPG~~~~~~~~~~~~~~~~ 236 (381)
+....++|+++|.+|||||||+|+|.+.... .....++.......+.. .+..+.+|||||..+......
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------- 90 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPY------- 90 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCG-------
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHH-------
Confidence 3345679999999999999999999987643 23333333222222332 345678999999876554332
Q ss_pred hhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCc
Q 016883 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKC 313 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~ 313 (381)
.++..+|++++|+|++++.+... ..++..+... ..++|+++|+||+
T Consensus 91 -------------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 139 (201)
T 3oes_A 91 -------------------------------SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139 (201)
T ss_dssp -------------------------------GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECT
T ss_pred -------------------------------HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 45678999999999987443333 2344444432 2378999999999
Q ss_pred cCCCcccchhH---H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcccc
Q 016883 314 ESPRKGIMQVS---E-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVEVC 361 (381)
Q Consensus 314 Dl~~~~~~~~~---~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~~ 361 (381)
|+......... . ....+.+++++||++|.|+++++++|.+.+.+....
T Consensus 140 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 140 DLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp TCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC---
T ss_pred cCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 99754332211 1 134577999999999999999999999988766544
No 80
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=166.93 Aligned_cols=156 Identities=18% Similarity=0.162 Sum_probs=107.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC--CceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|++....... .+..+.......+..+ +..+.+|||||+.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------- 89 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDS-RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA-------------- 89 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSC-CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT--------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh--------------
Confidence 569999999999999999999987643221 1111222222223333 34678999999975432
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+...
T Consensus 90 ------------------------~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 90 ------------------------ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp ------------------------THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred ------------------------hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 23356789999999999987543322 34555555432 47899999999999764
Q ss_pred ccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.... ...+ ...+++++++||++|.|+++++++|.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3211 1111 2457789999999999999999999887754
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.84 E-value=6.3e-21 Score=168.59 Aligned_cols=159 Identities=18% Similarity=0.067 Sum_probs=106.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCC-------CCcccccceee--E-Ee--CCceEEEEEcCCCCCccCCCch
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE-------PGVTRDRMYGR--S-FW--GEHEFMLVDTGGVLNVSKSQPN 230 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~-------~~tt~~~~~~~--~-~~--~~~~~~liDTPG~~~~~~~~~~ 230 (381)
.++|+++|.+|||||||++.+.+......... ...|....... + .. ....+.+|||||+..+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---- 89 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA---- 89 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH----
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH----
Confidence 56999999999999999998887643221110 11122111111 1 11 233588999999875432
Q ss_pred hhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHH-------hCCC
Q 016883 231 IMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK-------NYMD 303 (381)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~-------~~~~ 303 (381)
....++..+|++++|+|++++....+.+.+..+.. ...+
T Consensus 90 ----------------------------------~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~ 135 (198)
T 3t1o_A 90 ----------------------------------SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDD 135 (198)
T ss_dssp ----------------------------------HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTS
T ss_pred ----------------------------------HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCC
Confidence 33457789999999999986544444333333222 2258
Q ss_pred CeEEEEEeCccCCCcccchhHH-H-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 304 KFIILAVNKCESPRKGIMQVSE-F-WSLGF-SPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~~~~~~~~~-~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.|+++|+||+|+.+....+... + ...+. +++++||++|+|+++++++|.+.+.+..
T Consensus 136 ~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 136 VPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp SCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 9999999999997753333222 2 24566 8999999999999999999998876543
No 82
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.84 E-value=1.5e-20 Score=164.74 Aligned_cols=156 Identities=16% Similarity=0.105 Sum_probs=110.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||++++.+... ......++.......+..++. .+.+|||||+.+......
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 71 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP----------- 71 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG-----------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHH-----------
Confidence 35899999999999999999997653 233333443333333444554 456999999976543221
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
.++..+|++++|+|++++.+..+. .++..+.....+.|+++|+||+|+...
T Consensus 72 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 72 ---------------------------LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred ---------------------------HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccccc
Confidence 356789999999999875444443 466777765568999999999998754
Q ss_pred cc------------c---hhHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 GI------------M---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~~------------~---~~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.. . +...+ ...+. +++++||++|.|+++++++|.+.+.+.
T Consensus 125 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred chhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhcc
Confidence 21 0 01111 23454 899999999999999999999987653
No 83
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=9.1e-21 Score=163.58 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=104.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|++++.... .....+........+...+ ..+.+|||||+.+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------------- 66 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR--ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPA-------------- 66 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC--SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHH--------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHH--------------
Confidence 358999999999999999999987532 1111121111122223333 3578999999865321
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh---CCCCeEEEEEeCccCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN---YMDKFIILAVNKCESP 316 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~---~~~~p~ivV~NK~Dl~ 316 (381)
....++..+|++++|+|++++.+..+ ..++..+.+. ..+.|+++|+||+|+.
T Consensus 67 ------------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 67 ------------------------MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp ------------------------HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred ------------------------HHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 33356678999999999987533322 3344444442 2479999999999987
Q ss_pred Ccccchh---HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 317 RKGIMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 317 ~~~~~~~---~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
+...... .. ....+.+++++||++|.|+++++++|.+.+++.
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCCSS
T ss_pred cccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHhhh
Confidence 5432221 11 123467899999999999999999999887643
No 84
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.84 E-value=1.2e-20 Score=178.16 Aligned_cols=157 Identities=23% Similarity=0.350 Sum_probs=115.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|.+|||||||+|+|++.. ..+++++++|.+.....+.. +..+.+|||||+.........
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~------------ 68 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPE------------ 68 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHH------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChH------------
Confidence 4589999999999999999999876 46788899988876666655 678999999999875432210
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHh--ccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
+..+..++ ..+|++++|+|+++. .....+...+.+. ++|+++|+||+|+.....
T Consensus 69 --------------------e~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~ 124 (272)
T 3b1v_A 69 --------------------AKVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIET--GIPVTIALNMIDVLDGQG 124 (272)
T ss_dssp --------------------HHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT--CSCEEEEEECHHHHHHTT
T ss_pred --------------------HHHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHhc--CCCEEEEEEChhhCCcCC
Confidence 01222333 369999999999852 2234455555554 899999999999864321
Q ss_pred --chhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 321 --MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 321 --~~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.....+ ...+++++++||++|+|++++++++.+.+..
T Consensus 125 ~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 125 KKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp CCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCTT
T ss_pred cHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHhh
Confidence 111121 3457899999999999999999999987753
No 85
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.84 E-value=1.1e-20 Score=170.07 Aligned_cols=153 Identities=16% Similarity=0.125 Sum_probs=109.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCce--EEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||++++++... .....+++.......+..++.. +.+|||||+.+......
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----------- 96 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP----------- 96 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGG-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHH-----------
Confidence 56999999999999999999997653 3444555554444445555554 45999999976543222
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
.++..+|++++|+|++++.+..+. .++..+.....+.|+++|+||+|+...
T Consensus 97 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 97 ---------------------------LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTC
T ss_pred ---------------------------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccc
Confidence 356789999999999986555443 467777776678999999999998764
Q ss_pred ccc------------h---hHHH-hhCC-CceEEEecCCCCCHHHHHHHHHHHh
Q 016883 319 GIM------------Q---VSEF-WSLG-FSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 319 ~~~------------~---~~~~-~~~~-~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
... . ...+ ...+ .+++++||++|+|+++++++|.+.+
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 321 0 0111 2234 3699999999999999999998754
No 86
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.84 E-value=1.4e-20 Score=169.58 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=112.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
...+|+++|.+|||||||++++.+... ...+.+++.......+..++. .+.+|||||+..+.....
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 75 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRP---------- 75 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--C----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHH----------
Confidence 456999999999999999999997653 233444444333334445543 688999999976554322
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
.++..+|++++|+|++++.+..+. .|+..+.....+.|+++|+||+|+..
T Consensus 76 ----------------------------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 76 ----------------------------LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp ----------------------------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred ----------------------------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 456789999999999875444442 46677766556899999999999866
Q ss_pred ccc----------c-hhHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 318 KGI----------M-QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~~~----------~-~~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
... . +...+ ...+. +++++||++|+|+++++++|.+.+.+..
T Consensus 128 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred CccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 432 1 11111 23454 8999999999999999999999887654
No 87
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.8e-20 Score=165.74 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=108.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|++.... ....+..+.......+.+++ ..+.+|||||+.....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------- 79 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-------------- 79 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC--------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh--------------
Confidence 469999999999999999999987532 11122222222222334443 4688999999865433
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|++++.+..+ ..++..+.... .++|+++|+||+|+..
T Consensus 80 ------------------------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 80 ------------------------LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp ------------------------SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred ------------------------hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 22356688999999999987543333 34555555432 4789999999999965
Q ss_pred cccch--hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 318 KGIMQ--VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~~~~~--~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
..... ...+ ...+.+++++||++|.|+++++++|.+.+.+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 136 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 33221 1122 345778999999999999999999999887543
No 88
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.84 E-value=2.2e-20 Score=167.09 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=109.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|++.... ....+..+.+.....+..++ ..+.+|||||+........
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 75 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV----------- 75 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH-----------
Confidence 569999999999999999999987632 22223333334344444444 3688999999876544322
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-----CCCeEEEEEeCcc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-----MDKFIILAVNKCE 314 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-----~~~p~ivV~NK~D 314 (381)
.++..+|++++|+|++++.+..+ ..++..+.... .+.|+++|+||+|
T Consensus 76 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 128 (207)
T 1vg8_A 76 ---------------------------AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128 (207)
T ss_dssp ---------------------------GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTT
T ss_pred ---------------------------HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCC
Confidence 35678999999999987543333 23444444322 3789999999999
Q ss_pred CCCcccch--hHHH-h-hCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 315 SPRKGIMQ--VSEF-W-SLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 315 l~~~~~~~--~~~~-~-~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+....... ...+ . ..+.+++++||++|.|+++++++|.+.+.+..
T Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp SSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 97433221 1112 1 45678999999999999999999998876543
No 89
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.84 E-value=5.4e-21 Score=167.74 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=85.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|++.+.... ....+.++.+.....+.+++ ..+.+|||||........
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------ 74 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFN-STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT------------ 74 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH------------
Confidence 469999999999999999999976531 11122223333333445555 568899999987544322
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
..++..+|++++|+|++++.+... ..++..+... ..+.|+++|+||+|+.+.
T Consensus 75 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 75 --------------------------TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp --------------------------CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred --------------------------HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 245678999999999987544333 3455555553 247899999999999764
Q ss_pred ccc--hh-HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 GIM--QV-SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~~--~~-~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
... +. ..+ ...+.+++++||++|.|+++++++|.+.+.+
T Consensus 129 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 322 11 111 2457899999999999999999999987764
No 90
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.84 E-value=1.4e-20 Score=168.14 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=108.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|++..... ...+..+.......+...+ ..+.+|||||+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------------- 71 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTP-AFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR--------------- 71 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCS-CCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH---------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc---------------
Confidence 4699999999999999999999876321 1112112222222233333 468899999986422
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
.....++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+...
T Consensus 72 -----------------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 72 -----------------------TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp -----------------------HHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred -----------------------chHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 134456789999999999987543333 34555555532 47999999999999764
Q ss_pred ccchh---HHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 GIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~~~~~---~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
..... ..+ ...+++++++||++|.|+++++++|.+.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 172 (203)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 32221 111 23467999999999999999999998877643
No 91
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.84 E-value=1.7e-20 Score=171.33 Aligned_cols=158 Identities=19% Similarity=0.193 Sum_probs=106.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCc-ccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGV-TRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~t-t~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
+.++|+++|.+|||||||+++++...+ ...+..| ..+.....+..++. .+.||||+|.+++..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f--~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~------------ 77 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSF--DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS------------ 77 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC--C----------CEEEEEECSSCEEEEEEECCSCTTTCGG------------
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCC--CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh------------
Confidence 356999999999999999999997653 2222222 22233333444443 567999999976543
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESP 316 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~ 316 (381)
....++..+|++++|+|.++..+... ..|+..+... ..+.|+++|+||+|+.
T Consensus 78 --------------------------l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 78 --------------------------LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp --------------------------GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred --------------------------HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 23357789999999999998544444 3455555543 3579999999999997
Q ss_pred Ccccchh---HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 317 RKGIMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 317 ~~~~~~~---~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
....... .. ....+.+++++||++|.||+++|+.|.+.+....
T Consensus 132 ~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 132 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC----
T ss_pred hcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhh
Confidence 6433221 11 1345788999999999999999999998876543
No 92
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.84 E-value=3.2e-20 Score=163.94 Aligned_cols=157 Identities=20% Similarity=0.225 Sum_probs=105.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|++... .....+++.......+..++. .+.+|||||..+...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------------- 84 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------------- 84 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH--------------
Confidence 46999999999999999999997753 233444444433344455554 478999999865332
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|++++.+..+ ..++..+.... .+.|+++|+||+|+..
T Consensus 85 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 85 ------------------------MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -----------------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred ------------------------HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 22356788999999999987544333 33455554432 3799999999999876
Q ss_pred cccc--hhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 318 KGIM--QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~~~~--~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.... +...+ ...+++++++||++|.|+++++++|.+.+.+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 141 RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 3221 11111 235679999999999999999999999886543
No 93
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=8.8e-21 Score=191.70 Aligned_cols=162 Identities=48% Similarity=0.789 Sum_probs=114.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|.+|||||||+|+|++...+.+...+++|++.....+.+.+..+.+|||||+......
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~--------------- 87 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP--------------- 87 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------C---------------
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchH---------------
Confidence 57999999999999999999999887778889999999888888888889999999998632211
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~ 322 (381)
+...+...+..++..+|++++|+|+..+++..+.++.+.+++. ++|+++|+||+|+..... .
T Consensus 88 ---------------~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~--~~pvilV~NK~D~~~~~~-~ 149 (456)
T 4dcu_A 88 ---------------FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMRA-N 149 (456)
T ss_dssp ---------------CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC--CSCEEEEEECC---------
T ss_pred ---------------HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc--CCCEEEEEECccchhhhh-h
Confidence 1112334667788899999999999999999999988888875 999999999999875321 1
Q ss_pred hHHHhhCCC-ceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 323 VSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 323 ~~~~~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
...++..++ .++++||++|.|+++|++++.+.+..
T Consensus 150 ~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 150 IYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp -CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred HHHHHHcCCCceEEeecccccchHHHHHHHHhhccc
Confidence 122333443 57899999999999999999988764
No 94
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=168.31 Aligned_cols=158 Identities=16% Similarity=0.103 Sum_probs=108.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|.+..... ...+..+.+.....+.+++ ..+.+|||||..+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--------------- 92 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR--------------- 92 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGGH---------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH---------------
Confidence 5699999999999999999999775321 1112122233333445555 478899999986422
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
.....++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+...
T Consensus 93 -----------------------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 93 -----------------------TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp -----------------------HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred -----------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 134467789999999999987543332 34556665543 57999999999999753
Q ss_pred ccch---hHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 319 GIMQ---VSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.... ...+ ...+. +++++||++|.|+++++++|.+.+.+..
T Consensus 150 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp CCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 2211 1122 34577 8999999999999999999999886543
No 95
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.84 E-value=1.5e-20 Score=163.97 Aligned_cols=157 Identities=13% Similarity=0.095 Sum_probs=101.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC---CceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
..++|+++|.+|+|||||+|++++.... ....+..+.+.....+.++ ...+.+|||||......
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------ 73 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS------------ 73 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh------------
Confidence 3569999999999999999999987532 1222222333333334444 24688999999765332
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-----CCCeEEEEEeC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-----MDKFIILAVNK 312 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-----~~~p~ivV~NK 312 (381)
....++..+|++++|+|++++.+..+ ..++..+.... .+.|+++|+||
T Consensus 74 --------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 74 --------------------------LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp -----------------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred --------------------------hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 22345678999999999987543333 34454444421 47899999999
Q ss_pred ccCCCccc----chhHHHh--hCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 313 CESPRKGI----MQVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 313 ~Dl~~~~~----~~~~~~~--~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+|+..... .+...+. ..+.+++++||++|.|+++++++|.+.+.+
T Consensus 128 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp TTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred CccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99964321 1112222 346789999999999999999999987754
No 96
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=169.22 Aligned_cols=156 Identities=14% Similarity=0.073 Sum_probs=99.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||+|+|++... ...+.+++.......+..++. .+.+|||||..+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------------- 97 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR-------------- 97 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhH--------------
Confidence 46999999999999999999998753 223333443333333444554 578999999875433
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++++|+|++++.+.... .|+..+.....+.|+++|+||+|+...
T Consensus 98 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 98 ------------------------LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp -------------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred ------------------------HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 222456789999999999875444442 466667665568999999999999764
Q ss_pred ccc------------h---hHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 GIM------------Q---VSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~~~------------~---~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
... . ...+ ...+. +++++||++|.|+++++++|.+.+.+.
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred chhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 311 0 1111 23455 899999999999999999999887654
No 97
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=168.80 Aligned_cols=158 Identities=19% Similarity=0.156 Sum_probs=103.2
Q ss_pred CCCCCEEEEEcCCCCChhHHHHHHhCCCcc-cccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhh
Q 016883 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLA 236 (381)
Q Consensus 160 ~~~~~~v~l~G~~gvGKSSLin~L~~~~~~-~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~ 236 (381)
....++|+++|.+|||||||+|+|++.... ......+.+ .....+.+++ ..+.+|||||..+..
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------- 91 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVD--FQMKTLIVDGERTVLQLWDTAGQERFR----------- 91 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCTTCH-----------
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccce--eEEEEEEECCEEEEEEEEECCCCcchh-----------
Confidence 345679999999999999999999987532 122222222 2222334444 358899999986432
Q ss_pred hhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCcc
Q 016883 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCE 314 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~D 314 (381)
.....++..+|++++|+|++++.+..+ ..++..+.... .+.|+++|+||+|
T Consensus 92 ---------------------------~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D 144 (199)
T 2p5s_A 92 ---------------------------SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKAD 144 (199)
T ss_dssp ---------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGG
T ss_pred ---------------------------hhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 134456788999999999987544433 34555555432 4789999999999
Q ss_pred CCCc------c-cchh--HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 315 SPRK------G-IMQV--SE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 315 l~~~------~-~~~~--~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+... . .... .. ....+.+++++||++|.|+++++++|.+.+.+
T Consensus 145 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 145 IRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp GHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred cccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 8621 1 1111 11 12357789999999999999999999987753
No 98
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=2.7e-20 Score=163.93 Aligned_cols=160 Identities=28% Similarity=0.385 Sum_probs=115.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|++|||||||+|+|++.. ..++..+++|.+.....+..++..+.+|||||+........ .+
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--~~--------- 74 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI--DE--------- 74 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH--HH---------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH--HH---------
Confidence 4589999999999999999999875 35666777787777777778888999999999976533211 00
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHh--ccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~ 320 (381)
.....++ ..+|++++|+|..+ ......++..+... +.|+++|+||+|+.....
T Consensus 75 ---------------------~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~ 129 (188)
T 2wjg_A 75 ---------------------IIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEM--GANLLLALNKMDLAKSLG 129 (188)
T ss_dssp ---------------------HHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTT--TCCEEEEEECHHHHHHTT
T ss_pred ---------------------HHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhc--CCCEEEEEEhhhcccccc
Confidence 0112233 35999999999874 12224455555554 899999999999854321
Q ss_pred c--hhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 321 M--QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 321 ~--~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
. ....+ ...+.+++++||++|.|++++++++.+.+....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 130 IEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp CCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred chHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 1 11111 234679999999999999999999999887654
No 99
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=167.50 Aligned_cols=158 Identities=15% Similarity=0.097 Sum_probs=106.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|++.... ....+..+.......+..++ ..+.+|||||.......
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~------------- 90 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV------------- 90 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH-------------
Confidence 469999999999999999999987642 22223233333333445555 46889999997654332
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
...++..+|++++|+|++++.+..+ ..++..+... ..+.|+++|+||+|+...
T Consensus 91 -------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 91 -------------------------TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp -------------------------CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred -------------------------HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 2246688999999999987544333 3455555443 247999999999999654
Q ss_pred ccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.... ...+ ...+.+++++||++|.|+++++++|.+.+.+..
T Consensus 146 ~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190 (200)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 3221 1121 345789999999999999999999998776543
No 100
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.83 E-value=2.3e-20 Score=174.25 Aligned_cols=169 Identities=16% Similarity=0.200 Sum_probs=120.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCC-cccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPG-VTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~-tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
...+|+++|++|||||||+|+|++......+..+. +|.......+.+++..+.||||||+.+.........+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~------ 94 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKE------ 94 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHH------
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHH------
Confidence 45699999999999999999999886444444444 67777666777888899999999998765433321111
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCC---CCeEEEEEe-CccCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM---DKFIILAVN-KCESP 316 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~---~~p~ivV~N-K~Dl~ 316 (381)
+.+.+..++..+|++++|+|++. +...+..++..+.+.+. ..|.++|+| |+|+.
T Consensus 95 ---------------------i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 95 ---------------------VQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152 (260)
T ss_dssp ---------------------HHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred ---------------------HHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC
Confidence 12344557789999999999985 77777777777766432 467777777 99998
Q ss_pred Ccccch------------hHHHhhCC---CceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 317 RKGIMQ------------VSEFWSLG---FSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 317 ~~~~~~------------~~~~~~~~---~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
...... ........ +..+++||++|.|+++++++|.+.+...
T Consensus 153 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 153 GGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 543222 11111111 2238999999999999999999988763
No 101
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=165.05 Aligned_cols=161 Identities=18% Similarity=0.159 Sum_probs=110.8
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
...++|+++|.+|||||||+|++++.... ....+.++.+.....+.+++. .+.+|||||......
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------------ 87 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGG------------ 87 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGH------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchh------------
Confidence 34679999999999999999999865422 223444555544445555654 467899999864211
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCES 315 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl 315 (381)
.....++..+|++++|+|+++..+... ..++..+.... .+.|+++|+||+|+
T Consensus 88 -------------------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 142 (195)
T 3cbq_A 88 -------------------------WLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142 (195)
T ss_dssp -------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred -------------------------hhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhc
Confidence 012245678999999999987543332 34555555432 37999999999999
Q ss_pred CCcccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 316 PRKGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 316 ~~~~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
....... ...+ ...+.+++++||++|.|+++++++|.+.+....
T Consensus 143 ~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 143 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp TTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred cccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 7643221 1111 235678999999999999999999998876543
No 102
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.83 E-value=5.3e-20 Score=173.28 Aligned_cols=160 Identities=30% Similarity=0.382 Sum_probs=120.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|++|||||||+|+|++... .++..+++|.+.....+.+.+..+.+|||||+.+....... +
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~---~-------- 70 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID---E-------- 70 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH---H--------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH---H--------
Confidence 45899999999999999999999864 77888999988888888888889999999999875442220 0
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHh--ccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC-CeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMD-KFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~-~p~ivV~NK~Dl~~~~ 319 (381)
..+..++ ..+|++++|+|+++. .....+...+.+. + .|+++|+||+|+....
T Consensus 71 ---------------------~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 71 ---------------------LIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEM--EVKNIILVLNKFDLLKKK 125 (271)
T ss_dssp ---------------------HHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT--TCCSEEEEEECHHHHHHH
T ss_pred ---------------------HHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhc--CCCCEEEEEEChhcCccc
Confidence 1222333 679999999999863 2334444455544 5 9999999999975422
Q ss_pred cc--hhHH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 320 IM--QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 320 ~~--~~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.. .... ....+.+++++||++|.|++++++++.+.+....
T Consensus 126 ~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 126 GAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp TCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred ccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhccc
Confidence 11 1111 2345789999999999999999999999876543
No 103
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=3e-20 Score=167.30 Aligned_cols=157 Identities=17% Similarity=0.132 Sum_probs=109.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|++.... ....+..+.+.....+.+++. .+.+|||||.....
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--------------- 89 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR--------------- 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH---------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH---------------
Confidence 469999999999999999999987532 222232333333344555553 67899999975421
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
.....++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+...
T Consensus 90 -----------------------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 90 -----------------------SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp -----------------------HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred -----------------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 133456788999999999987543332 34555555532 47899999999999753
Q ss_pred ccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.... ...+ ...+.+++++||++|.|+++++++|.+.+.+.
T Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2221 1111 23567999999999999999999999887653
No 104
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.83 E-value=2.9e-20 Score=164.40 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=105.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.+|||||||+|+|++..... ...+..+.+.....+..++ ..+.+|||||..+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------------- 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCS-SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh-------------
Confidence 35699999999999999999999765322 1222223333333444555 4688999999754320
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESP 316 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~ 316 (381)
.....++..+|++++|+|++++.+... ..++..+.+. ..+.|+++|+||+|+.
T Consensus 85 ------------------------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 85 ------------------------SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp ------------------------TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred ------------------------hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 123356789999999999987543333 3455555554 2579999999999996
Q ss_pred Ccccch---hHHH-hhCCCceEEEecCCC---CCHHHHHHHHHHHhhh
Q 016883 317 RKGIMQ---VSEF-WSLGFSPLPISAISG---TGTGELLDLVCSELKK 357 (381)
Q Consensus 317 ~~~~~~---~~~~-~~~~~~~~~vSA~~g---~gi~~l~~~i~~~l~~ 357 (381)
...... ...+ ...+.+++++||++| +|+++++++|.+.+.+
T Consensus 141 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred ccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 543221 1112 345779999999999 9999999999887643
No 105
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.83 E-value=5.1e-20 Score=164.94 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=108.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||+|++.+.... ..+..++.......+..++. .+.+|||||..+......
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----------- 91 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRP----------- 91 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGG-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCC--cccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHH-----------
Confidence 469999999999999999999987642 22222322222233445553 678999999876443222
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
.++..+|++++|+|++++.+... ..|+..+.....+.|+++|+||+|+...
T Consensus 92 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 92 ---------------------------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred ---------------------------HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 35678999999999987543333 3466667666568999999999999764
Q ss_pred cc------------ch---hHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 319 GI------------MQ---VSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~~------------~~---~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.. .. ...+ ...+. +++++||++|.|+++++++|.+.+.
T Consensus 145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 21 11 1111 23455 7899999999999999999988764
No 106
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=5.4e-21 Score=169.64 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=108.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCccc-ccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..++|+++|.+|||||||+|+|++..... .....+++...........+..+.+|||||.....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------- 86 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR--------------- 86 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH---------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH---------------
Confidence 36799999999999999999999765311 11111222222222222234568999999965321
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~~ 318 (381)
.....++..+|++++|+|++++.+... ..|+..+.... .+.|+++|+||+|+...
T Consensus 87 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 87 -----------------------TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp -----------------------HHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred -----------------------HHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 234467789999999999987433322 34666665532 48999999999998654
Q ss_pred ccchhH---H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 319 GIMQVS---E-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 319 ~~~~~~---~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
...... . ....+.+++++||++|.|+++++++|.+.+.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 322211 1 1345779999999999999999999999876543
No 107
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.83 E-value=4.4e-20 Score=176.81 Aligned_cols=162 Identities=32% Similarity=0.520 Sum_probs=122.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCC-CccCCCchhhhhhhhhhccC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL-NVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~-~~~~~~~~~~~~~~~~~~~~ 242 (381)
.+|+++|++|||||||+|+|++...+.++..+++|++...+.+..++..+.++||||+. ....
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~---------------- 72 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR---------------- 72 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHH----------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchh----------------
Confidence 38999999999999999999999876677888888877777777778889999999986 2110
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCC-cc-c
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR-KG-I 320 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~-~~-~ 320 (381)
.+...+...+..++..+|++++|+|+++ ++..+.++.+.+... +.|+++|+||+|+.. .. .
T Consensus 73 --------------~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~~~ 135 (301)
T 1ega_A 73 --------------AINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREG--KAPVILAVNKVDNVQEKADL 135 (301)
T ss_dssp --------------HHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSS--SSCEEEEEESTTTCCCHHHH
T ss_pred --------------hHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhc--CCCEEEEEECcccCccHHHH
Confidence 0000111223456788999999999987 888887777777654 899999999999986 22 2
Q ss_pred chhHHHh--hCCC-ceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 321 MQVSEFW--SLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 321 ~~~~~~~--~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.+..... ..++ +++++||++|.|++++++++.+.+++.
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcC
Confidence 2222222 2344 689999999999999999999887643
No 108
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.83 E-value=2.2e-20 Score=168.98 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=105.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCccc-ccCCCCcccccceeeEEeC-C--ceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~-~~~~~~tt~~~~~~~~~~~-~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
.++|+++|.+|||||||+|+|++..... .....+.+... ...... + ..+.+|||||+........
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------- 79 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHP--VTFLDDQGNVIKFNVWDTAGQEKKAVLKD--------- 79 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEE--EEEEBTTSCEEEEEEEEECSGGGTSCCCH---------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEE--EEEEeCCCcEEEEEEEecCCchhhchHHH---------
Confidence 5699999999999999999999765321 11222221111 112222 2 4588999999876544322
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESP 316 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~ 316 (381)
.++..+|++++|+|++++.+..+ ..|+..+.... .+.|+++|+||+|+.
T Consensus 80 -----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 80 -----------------------------VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp -----------------------------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred -----------------------------HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 45678999999999998654444 34555555432 358999999999997
Q ss_pred CcccchhH---HH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 317 RKGIMQVS---EF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 317 ~~~~~~~~---~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
........ .+ ...+.+++++||++|.|+++++++|.+.+....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp ----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred cccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 65322211 11 235678999999999999999999999887654
No 109
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.82 E-value=6.9e-20 Score=159.95 Aligned_cols=150 Identities=11% Similarity=0.126 Sum_probs=103.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||+|++++..... ...|+.......+..++. .+.+|||||...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------------- 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD----------------- 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----------------
Confidence 4699999999999999999999876432 222332222333445553 478999999853
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh----CCCCeEEEEEeCccC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN----YMDKFIILAVNKCES 315 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~----~~~~p~ivV~NK~Dl 315 (381)
..++..+|++++|+|++++.+..+ ..|+..+... ..+.|+++|+||+|+
T Consensus 67 --------------------------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl 120 (178)
T 2iwr_A 67 --------------------------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120 (178)
T ss_dssp --------------------------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred --------------------------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 034567999999999987554444 2333334332 147899999999998
Q ss_pred CC--cccc---hhHHH-hh-CCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 316 PR--KGIM---QVSEF-WS-LGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 316 ~~--~~~~---~~~~~-~~-~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
.. .... +...+ .. .+.+++++||++|.|+++++++|.+.+.+.
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp BTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred cccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHH
Confidence 42 1111 11122 12 367899999999999999999999877654
No 110
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=3.6e-20 Score=164.96 Aligned_cols=156 Identities=18% Similarity=0.183 Sum_probs=107.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
....+|+++|.+|||||||+|+|++.... .....++.......+..++ ..+.+|||||+.+ .
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~--------- 89 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-----T--------- 89 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-----C---------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-----c---------
Confidence 34579999999999999999999987532 2223233222223344444 3578999999875 1
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCES 315 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl 315 (381)
.....++..+|++++|+|++++.+..+ ..++..+... ..+.|+++|+||+|+
T Consensus 90 -------------------------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 144 (196)
T 2atv_A 90 -------------------------IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144 (196)
T ss_dssp -------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred -------------------------cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccc
Confidence 133456678999999999987443332 3344444442 248999999999999
Q ss_pred CCcccch---hHHH-hhCCCceEEEecCCCC-CHHHHHHHHHHHhhh
Q 016883 316 PRKGIMQ---VSEF-WSLGFSPLPISAISGT-GTGELLDLVCSELKK 357 (381)
Q Consensus 316 ~~~~~~~---~~~~-~~~~~~~~~vSA~~g~-gi~~l~~~i~~~l~~ 357 (381)
....... ...+ ...+.+++++||++|. |+++++++|.+.+.+
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp GGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 7642221 1111 2347799999999999 999999999988764
No 111
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=5.9e-20 Score=165.28 Aligned_cols=156 Identities=15% Similarity=0.114 Sum_probs=106.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||+|+|.+.... ....+++.......+..++ ..+.+|||||..+......
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 91 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP----------- 91 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGG-----------
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHH-----------
Confidence 358999999999999999999987642 2222233322223344455 3578999999876543222
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
.++..+|++++|+|++++.+... ..|+..+.....+.|+++|+||+|+...
T Consensus 92 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 92 ---------------------------LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp ---------------------------GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred ---------------------------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 35678999999999987433333 3566677665568999999999999754
Q ss_pred ccc------------h---hHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 GIM------------Q---VSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~~~------------~---~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
... . ...+ ...+. +++++||++|.|+++++++|.+.+.+.
T Consensus 145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred ccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 211 0 0111 12344 789999999999999999999887643
No 112
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.82 E-value=6.2e-20 Score=167.16 Aligned_cols=159 Identities=14% Similarity=0.093 Sum_probs=107.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|+|.+..... ...+..+.......+.+++ ..+.+|||||+..+.....
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 80 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNM-DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS----------- 80 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG-----------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH-----------
Confidence 5699999999999999999999876422 2222233333333445555 4688999999876544332
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
.++..+|++++|+|++++.+..+ ..|+..+... ..+.|+++|+||+|+...
T Consensus 81 ---------------------------~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 81 ---------------------------AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp ---------------------------GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred ---------------------------HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 45678999999999987544443 3455555543 247899999999999753
Q ss_pred ccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 319 ~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
.... ...+ ...+.+++++||++|.|+++++++|.+.+.+...
T Consensus 134 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 3221 1122 3457799999999999999999999988775443
No 113
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.82 E-value=2e-19 Score=176.61 Aligned_cols=167 Identities=24% Similarity=0.271 Sum_probs=112.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
+.+.|+++|++|||||||+|+|++... .+.+.+++|.+.....+.+++..+.+|||||+.. ....+.++.+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~--~lp~~lve~f------ 248 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIR--GIPPQIVDAF------ 248 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCS--SCCGGGHHHH------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchh--cCCHHHHHHH------
Confidence 345699999999999999999999864 6677888999888888888888899999999854 2223333332
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC--ChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCC
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--TAAD-EEIADWLRKN-YMDKFIILAVNKCESPR 317 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~--~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~ 317 (381)
+.+...+..+|++++|+|++++. .... ..+...+... ..+.|+++|+||+|+.+
T Consensus 249 ----------------------~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 249 ----------------------FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp ----------------------HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred ----------------------HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 24556778999999999998764 1222 1233344432 24789999999999987
Q ss_pred cccch---hH----HHh-hCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 318 KGIMQ---VS----EFW-SLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~~~~~---~~----~~~-~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
..... .. ... ..+.+++++||++|.|+++++++|.+.+....
T Consensus 307 ~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 307 GDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp SCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 54221 11 111 11336799999999999999999999877544
No 114
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.82 E-value=5.6e-20 Score=166.79 Aligned_cols=158 Identities=15% Similarity=0.052 Sum_probs=110.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
...+|+++|.+|||||||+|++++... ...+..|+.......+..++ ..+.+|||||...+.....
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---------- 93 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP---------- 93 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGG----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHH----------
Confidence 356999999999999999999998763 23333333222222333333 4678999999876544222
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
.++..+|++++|+|++++.+..+ ..|+..+.....+.|+++|+||+|+..
T Consensus 94 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 94 ----------------------------LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp ----------------------------GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred ----------------------------HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 45678999999999998655544 457777777667899999999999965
Q ss_pred c------------ccc--h-hHH-HhhCCC-ceEEEecCCCCC-HHHHHHHHHHHhhhcc
Q 016883 318 K------------GIM--Q-VSE-FWSLGF-SPLPISAISGTG-TGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~------------~~~--~-~~~-~~~~~~-~~~~vSA~~g~g-i~~l~~~i~~~l~~~~ 359 (381)
. ... + ... ....+. +++++||++|.| +++++++|.+.+.+..
T Consensus 146 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred chhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 2 111 1 111 134567 899999999998 9999999999876543
No 115
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=5.2e-20 Score=163.42 Aligned_cols=158 Identities=17% Similarity=0.141 Sum_probs=105.9
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.+|||||||+|+|.+.... .....+........+..++ ..+.+|||||+.+..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------------- 70 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFR--DTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------------- 70 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCC--CTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH--------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCC--CcccCccccceeEEEEECCEEEEEEEEeCCChHHhH--------------
Confidence 4569999999999999999999986532 1111121111122223333 357899999976432
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh---CCCCeEEEEEeCccC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN---YMDKFIILAVNKCES 315 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~---~~~~p~ivV~NK~Dl 315 (381)
.....++..+|++++|+|++++.+... ..++..+.+. ..+.|+++|+||+|+
T Consensus 71 ------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl 126 (199)
T 2gf0_A 71 ------------------------AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE 126 (199)
T ss_dssp ------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTC
T ss_pred ------------------------HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence 133355678999999999987433322 2344444432 237899999999999
Q ss_pred CCcccchh--HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 316 PRKGIMQV--SE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 316 ~~~~~~~~--~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
........ .. ....+.+++++||++|.|+++++++|.+.+.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 127 TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp SSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred CccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhhh
Confidence 76432211 11 1235678999999999999999999999887554
No 116
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.82 E-value=7.5e-20 Score=162.10 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=106.0
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
...+|+++|.+|||||||+|++++... ...+.+|+.......+..++. .+.+|||||...+...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------------ 85 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC------------ 85 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT------------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH------------
Confidence 356999999999999999999998753 234444443332333344443 5779999998754321
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC----CCCeEEEEEeCcc
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY----MDKFIILAVNKCE 314 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~----~~~p~ivV~NK~D 314 (381)
..++..+|++++|+|++++.+... ..|+..+.... .+.|+++|+||+|
T Consensus 86 ---------------------------~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 138 (187)
T 3c5c_A 86 ---------------------------ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138 (187)
T ss_dssp ---------------------------HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGG
T ss_pred ---------------------------HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcc
Confidence 135678999999999987544333 33555555432 5899999999999
Q ss_pred CCCcccch---hHHH-hhCCCceEEEec-CCCCCHHHHHHHHHHHhhh
Q 016883 315 SPRKGIMQ---VSEF-WSLGFSPLPISA-ISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 315 l~~~~~~~---~~~~-~~~~~~~~~vSA-~~g~gi~~l~~~i~~~l~~ 357 (381)
+....... ...+ ...+.+++++|| ++|.|+++++++|.+.+.+
T Consensus 139 l~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 139 MAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp GGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred hhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHhh
Confidence 96532221 1111 345779999999 8999999999999987653
No 117
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.82 E-value=2.8e-19 Score=159.47 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=102.7
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEE---eCCceEEEEEcCCCCCccCCCchhhhhh
Q 016883 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSF---WGEHEFMLVDTGGVLNVSKSQPNIMEDL 235 (381)
Q Consensus 159 ~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~---~~~~~~~liDTPG~~~~~~~~~~~~~~~ 235 (381)
+....++|+++|.+|||||||+|++.+..... ...+.+......... .....+.+|||||...+.....
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~------ 87 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTF------ 87 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTC------
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhh------
Confidence 34457899999999999999999998864322 111111111111112 2335789999999876543210
Q ss_pred hhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHH---hCCCCeEEEEEeC
Q 016883 236 AITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK---NYMDKFIILAVNK 312 (381)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~---~~~~~p~ivV~NK 312 (381)
....++..+|++++|+|++++.......+..++.+ ...+.|+++|+||
T Consensus 88 -----------------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK 138 (196)
T 3llu_A 88 -----------------------------DYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138 (196)
T ss_dssp -----------------------------CHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred -----------------------------hcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEec
Confidence 00256678999999999998633333444444433 3468999999999
Q ss_pred ccCCCcccc-----hh-----HHH-h----hCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 313 CESPRKGIM-----QV-----SEF-W----SLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 313 ~Dl~~~~~~-----~~-----~~~-~----~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
+|+.+.... .. ..+ . ..+.+++++||++ +|++++++.+.+.+
T Consensus 139 ~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 139 VDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 998763211 10 011 1 3456899999999 99999999998764
No 118
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.82 E-value=1.5e-20 Score=167.87 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=79.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCccc-ccceeeEEeCC----ceEEEEEcCCCCCccCCCchhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTR-DRMYGRSFWGE----HEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~-~~~~~~~~~~~----~~~~liDTPG~~~~~~~~~~~~~~~~~ 237 (381)
.++|+++|.+|||||||+|+|.+..........+|+. +.....+.+++ ..+.+|||||+....
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------ 87 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK------------ 87 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH------------
Confidence 4599999999999999999999873223334443432 34444455554 368999999985421
Q ss_pred hhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC----CCCeEEEEEeC
Q 016883 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY----MDKFIILAVNK 312 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~----~~~p~ivV~NK 312 (381)
.....++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||
T Consensus 88 --------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 88 --------------------------EQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp --------------------------HHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred --------------------------HHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 133356788999999999987544333 35666666543 38999999999
Q ss_pred ccCCC-cccch---hHHH-hhCCCceEEEecCC-CCCHHHHHHHHHHHhhhc
Q 016883 313 CESPR-KGIMQ---VSEF-WSLGFSPLPISAIS-GTGTGELLDLVCSELKKV 358 (381)
Q Consensus 313 ~Dl~~-~~~~~---~~~~-~~~~~~~~~vSA~~-g~gi~~l~~~i~~~l~~~ 358 (381)
+|+.. ..... ...+ ...+.+++++||++ |.|+++++++|.+.+.+.
T Consensus 142 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp C-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHH
T ss_pred cccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHH
Confidence 99976 32221 1122 34578999999999 999999999999877643
No 119
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.81 E-value=2e-20 Score=169.16 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=104.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC------------CceEEEEEcCCCCCccCCCch
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG------------EHEFMLVDTGGVLNVSKSQPN 230 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~------------~~~~~liDTPG~~~~~~~~~~ 230 (381)
.++|+++|.+|||||||+|+|++.... ....+..+.+.....+.++ ...+.||||||..++
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~------ 97 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF------ 97 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH------
Confidence 569999999999999999999987531 1111111111222223333 346899999997432
Q ss_pred hhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEE
Q 016883 231 IMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFII 307 (381)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~i 307 (381)
...+..++..+|++++|+|++++.+..+ ..++..+.... .+.|++
T Consensus 98 --------------------------------~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~pii 145 (217)
T 2f7s_A 98 --------------------------------RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145 (217)
T ss_dssp --------------------------------HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEE
T ss_pred --------------------------------HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEE
Confidence 1244567789999999999987433332 22333333221 479999
Q ss_pred EEEeCccCCCcccch---hHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 308 LAVNKCESPRKGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 308 vV~NK~Dl~~~~~~~---~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
+|+||+|+....... ...+ ...+++++++||++|.|+++++++|.+.+.+.
T Consensus 146 lV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp EEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999997643221 1111 34578999999999999999999999877643
No 120
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.81 E-value=3.7e-20 Score=180.34 Aligned_cols=165 Identities=24% Similarity=0.305 Sum_probs=121.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC-ceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.++|+++|.+|||||||+|+|++.. ..+.+++++|.......+.+++ ..+.+|||||+.+.......+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l---------- 226 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGL---------- 226 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTT----------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchh----------
Confidence 4589999999999999999999875 4667888899888887777775 789999999986533322211
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC---CCChhH-HHHHHHHHHh---CCCCeEEEEEeCcc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA---GLTAAD-EEIADWLRKN---YMDKFIILAVNKCE 314 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~---~~~~~~-~~~~~~l~~~---~~~~p~ivV~NK~D 314 (381)
...+...+..+|++++|+|+++ .....+ ..+...+... +.++|+++|+||+|
T Consensus 227 ---------------------~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 227 ---------------------GHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp ---------------------HHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ---------------------HHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 1234556678999999999986 233333 3455666653 24899999999999
Q ss_pred CCCccc-chhHHHhhCC--CceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 315 SPRKGI-MQVSEFWSLG--FSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 315 l~~~~~-~~~~~~~~~~--~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
+..... .+... ...+ .+++++||++++|+++|+++|.+.+.+...
T Consensus 286 l~~~~e~~~~l~-~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 286 MPEAAENLEAFK-EKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp STTHHHHHHHHH-HHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred CCCCHHHHHHHH-HHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 986432 11111 2223 689999999999999999999999876543
No 121
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.81 E-value=4.4e-21 Score=171.46 Aligned_cols=157 Identities=20% Similarity=0.182 Sum_probs=103.9
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++ ..+.+|||||.........
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 100 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS---------- 100 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCC-CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSC----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHH----------
Confidence 3579999999999999999999987532 11122233334444455555 4588999999876554333
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC-CCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ivV~NK~Dl~~ 317 (381)
.++..+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+.+
T Consensus 101 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 101 ----------------------------SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp ----------------------------C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred ----------------------------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 35578999999999997554433 34555554432 3789999999999976
Q ss_pred cccch---hHH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 318 KGIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 318 ~~~~~---~~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
..... ... ....+.+++++||++|.|+++++++|.+.+.+
T Consensus 153 ~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 153 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp -CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 43221 111 23457799999999999999999999887764
No 122
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.81 E-value=1.3e-18 Score=153.05 Aligned_cols=166 Identities=25% Similarity=0.315 Sum_probs=104.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 243 (381)
++|+++|.+|||||||+|++++... ..+..+++|....... .. .+.+|||||+...........+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~~~--------- 67 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKV-RRGKRPGVTRKIIEIE--WK--NHKIIDMPGFGFMMGLPKEVQER--------- 67 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCC-SSSSSTTCTTSCEEEE--ET--TEEEEECCCBSCCTTSCHHHHHH---------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCC-ccCCCCCccceeEEEe--cC--CEEEEECCCccccccCCHHHHHH---------
Confidence 5899999999999999999998863 4555666666554433 22 68999999986533221110111
Q ss_pred CCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC-----------CChhHHHHHHHHHHhCCCCeEEEEEeC
Q 016883 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-----------LTAADEEIADWLRKNYMDKFIILAVNK 312 (381)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~-----------~~~~~~~~~~~l~~~~~~~p~ivV~NK 312 (381)
+..............++++++|+|.... ....+.++...+... +.|+++|+||
T Consensus 68 --------------~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~piilv~nK 131 (190)
T 2cxx_A 68 --------------IKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNK 131 (190)
T ss_dssp --------------HHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred --------------HHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhc--CCceEEEeeh
Confidence 1111111111124567788888887631 111122333444443 8999999999
Q ss_pred ccCCCcccchhHHH-hhCCC-------ceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 313 CESPRKGIMQVSEF-WSLGF-------SPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 313 ~Dl~~~~~~~~~~~-~~~~~-------~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+|+..........+ ...+. +++++||++|+|+++++++|.+.+.+..
T Consensus 132 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 132 LDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp GGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred HhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 99987541111111 12233 4799999999999999999999886544
No 123
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.81 E-value=4.3e-19 Score=157.02 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=106.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
....+|+++|.+|||||||+|++++.... ..... |.......+.+++. .+.+|||||...+
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------- 80 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV--QEESP-EGGRFKKEIVVDGQSYLLLIRDEGGPPEL-------------- 80 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC--CCCCT-TCEEEEEEEEETTEEEEEEEEECSSSCCH--------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCC-CcceEEEEEEECCEEEEEEEEECCCChhh--------------
Confidence 34679999999999999999999987642 22222 22222344556664 4668999998641
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhC--CCCeEEEEEeCccC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCES 315 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ivV~NK~Dl 315 (381)
.++..+|++++|+|++++.+..+ ..|+..+.... .+.|+++|+||+|+
T Consensus 81 -----------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (184)
T 3ihw_A 81 -----------------------------QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131 (184)
T ss_dssp -----------------------------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred -----------------------------heecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 14567999999999998655554 45666666542 47899999999998
Q ss_pred CCc--ccc---hhHHH-hhCC-CceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 316 PRK--GIM---QVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 316 ~~~--~~~---~~~~~-~~~~-~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
... ... +...+ ...+ .+++++||++|.|+++++++|.+.+.+.
T Consensus 132 ~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 132 SAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181 (184)
T ss_dssp BTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence 532 111 11112 2344 7899999999999999999999877653
No 124
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.81 E-value=1.4e-19 Score=159.57 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=105.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||+|+|.+.... ..+..+........+..++ ..+.+|||||...+.....
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 73 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP----------- 73 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG-----------
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH-----------
Confidence 459999999999999999999987532 2222232222222334443 3578999999876443221
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
.++..+|++++|+|++++.+..+ ..|+..+.+...+.|+++|+||+|+...
T Consensus 74 ---------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 126 (184)
T 1m7b_A 74 ---------------------------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 126 (184)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred ---------------------------hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcc
Confidence 35678999999999987544443 2466666665568999999999999742
Q ss_pred c------------cc--h-hHHH-hhCC-CceEEEecC-CCCCHHHHHHHHHHHhh
Q 016883 319 G------------IM--Q-VSEF-WSLG-FSPLPISAI-SGTGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~------------~~--~-~~~~-~~~~-~~~~~vSA~-~g~gi~~l~~~i~~~l~ 356 (381)
. .. + ...+ ...+ .+++++||+ +|.|++++++++.+.+.
T Consensus 127 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 127 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 1 11 1 1112 1234 689999999 69999999999988764
No 125
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.80 E-value=2e-19 Score=162.20 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=97.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC---CceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
.++|+++|.+|||||||+++|++... ...++.++... ..+.++ +..+.+|||||+.+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~~------------- 69 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSS--AIYKVNNNRGNSLTLIDLPGHESLRF------------- 69 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEE--EEEECSSTTCCEEEEEECCCCHHHHH-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceee--EEEEecCCCccEEEEEECCCChhHHH-------------
Confidence 56999999999999999999998763 23333333222 234555 45799999999864211
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHH----HHHHHHH---hCCCCeEEEEEeC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE----IADWLRK---NYMDKFIILAVNK 312 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~----~~~~l~~---~~~~~p~ivV~NK 312 (381)
.....++..+|++++|+|+++ ......+ +...+.. ...+.|+++|+||
T Consensus 70 ------------------------~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 124 (214)
T 2fh5_B 70 ------------------------QLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124 (214)
T ss_dssp ------------------------HHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEEC
T ss_pred ------------------------HHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEEC
Confidence 023345789999999999985 1111122 2222322 1236899999999
Q ss_pred ccCCCcccchhH--------H-------------------------------HhhC--CCceEEEecCCC------CCHH
Q 016883 313 CESPRKGIMQVS--------E-------------------------------FWSL--GFSPLPISAISG------TGTG 345 (381)
Q Consensus 313 ~Dl~~~~~~~~~--------~-------------------------------~~~~--~~~~~~vSA~~g------~gi~ 345 (381)
+|+......+.. . +... +.+++++||++| .|++
T Consensus 125 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~ 204 (214)
T 2fh5_B 125 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQ 204 (214)
T ss_dssp TTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChH
Confidence 999764321110 0 0011 557899999999 9999
Q ss_pred HHHHHHHHH
Q 016883 346 ELLDLVCSE 354 (381)
Q Consensus 346 ~l~~~i~~~ 354 (381)
+++++|.+.
T Consensus 205 ~lf~~l~~~ 213 (214)
T 2fh5_B 205 DLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
No 126
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.80 E-value=7.2e-19 Score=170.43 Aligned_cols=154 Identities=20% Similarity=0.212 Sum_probs=108.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
..++|+++|.+|||||||+|+|.+.... ... .|.......+...+..+.||||||...+..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 224 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRP--------------- 224 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE--EEE--EETTEEEEEEEETTEEEEEEECC-----CC---------------
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC--Ccc--cccceEEEEEecCcEEEEEEECCCCHhHHH---------------
Confidence 4569999999999999999999987642 222 255555556677788899999999765443
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
....++..+|++|+|+|+++..+... ..+...+... ..++|+++|+||+|+.+.
T Consensus 225 -----------------------~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 225 -----------------------LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp -----------------------SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred -----------------------HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 22356688999999999987555443 2333333322 248999999999999875
Q ss_pred ccchhHH-Hh------hCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 GIMQVSE-FW------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~~~~~~-~~------~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
...+... .. ..+++++++||++|.|+++++++|.+.+.+
T Consensus 282 ~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 282 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp CCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 4322221 11 124578999999999999999999998764
No 127
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.9e-19 Score=162.52 Aligned_cols=159 Identities=19% Similarity=0.149 Sum_probs=106.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCce--EEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|++++.........+.++.+.....+.+++.. +.+|||+|.... .
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~----~----------- 101 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE----N----------- 101 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH----H-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch----h-----------
Confidence 46999999999999999999997654334444444444444445566654 578999997531 0
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~ 317 (381)
......++..+|++++|+|.++..+... ..|...+.+. ..++|+++|+||+|+..
T Consensus 102 ----------------------~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 102 ----------------------EWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp ----------------------HHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred ----------------------hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 0012234567999999999987443333 2344445432 24799999999999965
Q ss_pred cccchhH---H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 318 KGIMQVS---E-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 318 ~~~~~~~---~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
....... . ....+.+++++||++|+|++++|++|.+.+...
T Consensus 160 ~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 160 CREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 3222111 1 123467899999999999999999999887543
No 128
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.80 E-value=2.5e-19 Score=168.98 Aligned_cols=170 Identities=16% Similarity=0.119 Sum_probs=101.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccC-------CCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVD-------EPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIME 233 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~-------~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~ 233 (381)
.++|+++|.+|+|||||+|+|++........ .+.++.......+..++. .+.+|||||+.+...... .
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~-~-- 84 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN-C-- 84 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTT-T--
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchh-h--
Confidence 4699999999999999999999876432221 122222222333333443 789999999976533211 0
Q ss_pred hhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhcc-------------ccEEEEEEeCCC-CCChhHHHHHHHHHH
Q 016883 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE-------------SCVIIFLVDGQA-GLTAADEEIADWLRK 299 (381)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------~d~ii~VvD~~~-~~~~~~~~~~~~l~~ 299 (381)
...+..++..+...++.. +|+++|+++... ++...+.++++.+..
T Consensus 85 ---------------------~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~ 143 (274)
T 3t5d_A 85 ---------------------WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE 143 (274)
T ss_dssp ---------------------THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT
T ss_pred ---------------------HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence 112223333344444443 789999997654 788888888888776
Q ss_pred hCCCCeEEEEEeCccCCCcccchhH------HHhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 300 NYMDKFIILAVNKCESPRKGIMQVS------EFWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 300 ~~~~~p~ivV~NK~Dl~~~~~~~~~------~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
++|+++|+||+|+......... .....+++++++||++|+|+++++++|.+.++-..
T Consensus 144 ---~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~~v 206 (274)
T 3t5d_A 144 ---KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAV 206 (274)
T ss_dssp ---TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSEEC
T ss_pred ---cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCcEE
Confidence 8999999999999865433221 12245778999999999999999999998876443
No 129
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.79 E-value=2.6e-19 Score=161.51 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=106.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|||||||+|+|.+.... ..+..+........+.+++ ..+.+|||||...+.....
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----------- 94 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP----------- 94 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG-----------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH-----------
Confidence 569999999999999999999987532 2222232222222334444 3578999999876443221
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH--HHHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~--~~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
.++..+|++++|+|++++.+..+ ..|+..+.+...+.|+++|+||+|+...
T Consensus 95 ---------------------------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 147 (205)
T 1gwn_A 95 ---------------------------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 147 (205)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGC
T ss_pred ---------------------------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccc
Confidence 35678999999999987544443 3466667665568999999999999742
Q ss_pred c------------cc--h-hHHH-hhCC-CceEEEecC-CCCCHHHHHHHHHHHhh
Q 016883 319 G------------IM--Q-VSEF-WSLG-FSPLPISAI-SGTGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~------------~~--~-~~~~-~~~~-~~~~~vSA~-~g~gi~~l~~~i~~~l~ 356 (381)
. .. + ...+ ...+ .+++++||+ +|.|+++++++|.+.+.
T Consensus 148 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 148 VSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 1 11 1 1112 1234 689999999 68999999999988764
No 130
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.79 E-value=5.5e-19 Score=157.55 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=103.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|.+|||||||+|++++.........+.++.+.....+.+++. .+.+|||+|.......
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~------------- 72 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEW------------- 72 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CT-------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhh-------------
Confidence 4589999999999999999999654333344443444443444556665 4578999997541110
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPR 317 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|.++..+... ..+...+.+. ..+.|+++|+||+|+..
T Consensus 73 ------------------------~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 73 ------------------------LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp ------------------------TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred ------------------------HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 00123467899999999987544333 2344444442 24789999999999865
Q ss_pred cccchhH---HH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 318 KGIMQVS---EF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 318 ~~~~~~~---~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
....... .+ ...+.+++++||++|.|++++++++.+.+....
T Consensus 129 ~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 129 XREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 3222111 11 235678999999999999999999998875433
No 131
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=160.20 Aligned_cols=169 Identities=17% Similarity=0.257 Sum_probs=110.4
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCC--CcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP--GVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~--~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
...++|+++|.+|||||||+|+|++... .....+ ++|.......+.+++..+.+|||||+.+.........+++
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~--- 102 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI--- 102 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH---
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH---
Confidence 3457999999999999999999999875 333333 5677777777788888999999999987544333222222
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhC---CCCeEEEEEeCccC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY---MDKFIILAVNKCES 315 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~---~~~p~ivV~NK~Dl 315 (381)
.+........+|++++|+|++ .++..+..++..+.+.+ ...|+++|+||+|+
T Consensus 103 ------------------------~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 103 ------------------------IRCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp ------------------------HHHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred ------------------------HHHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 233444556789999999997 45556666666665422 24699999999998
Q ss_pred CCcccch--------hHH--HhhCCCceEEEecCCC-----CCHHHHHHHHHHHhhhc
Q 016883 316 PRKGIMQ--------VSE--FWSLGFSPLPISAISG-----TGTGELLDLVCSELKKV 358 (381)
Q Consensus 316 ~~~~~~~--------~~~--~~~~~~~~~~vSA~~g-----~gi~~l~~~i~~~l~~~ 358 (381)
......+ ... ....+..++.+++..+ .|+.+|++.+.+.+.+.
T Consensus 158 ~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 158 LGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp C------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 7643222 111 1233556777777644 78999999998888654
No 132
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.66 E-value=7.8e-21 Score=170.33 Aligned_cols=154 Identities=15% Similarity=0.108 Sum_probs=105.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
...+|+++|.+|||||||+|++++... ......++.......+..++. .+.+|||||+.+...
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------- 93 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR------------- 93 (204)
Confidence 467999999999999999999997653 233333443333333333333 456999999875432
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
....++..+|++++|+|++++.+..+. .++..+.....+.|+++|+||+|+.+
T Consensus 94 -------------------------~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 94 -------------------------LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148 (204)
Confidence 222456789999999999876555442 46666665445899999999999975
Q ss_pred ccc------------chhH---HH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHh
Q 016883 318 KGI------------MQVS---EF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 318 ~~~------------~~~~---~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
... .... .+ ...+. +++++||++|.|+++++++|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 321 0000 01 12344 789999999999999999987754
No 133
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.79 E-value=4.7e-20 Score=188.97 Aligned_cols=154 Identities=18% Similarity=0.249 Sum_probs=120.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe-CCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
.++|+++|++|+|||||+|+|.+... .....+++|.+.....+.. .+..+.||||||+.++.....
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~-~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~------------ 70 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQV-AAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA------------ 70 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHH-HHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH------------
Confidence 56899999999999999999998764 3345677788777666655 456799999999987665433
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc-
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~- 320 (381)
.++..+|++++|+|++++...++.+.+..+... ++|+++|+||+|+.....
T Consensus 71 --------------------------~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~--~vPiIVViNKiDl~~~~~~ 122 (537)
T 3izy_P 71 --------------------------RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA--HVPIVLAINKCDKAEADPE 122 (537)
T ss_dssp --------------------------SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT--TCCEEECCBSGGGTTTSCC
T ss_pred --------------------------HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc--CCcEEEEEecccccccchH
Confidence 345789999999999999999998888888776 899999999999975321
Q ss_pred --chhHHHh-------hCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 321 --MQVSEFW-------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 321 --~~~~~~~-------~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
....... ....+++++||++|.|+++|+++|...+..
T Consensus 123 ~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 123 KVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp SSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhc
Confidence 1111111 123478999999999999999999987653
No 134
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.78 E-value=4.7e-19 Score=156.39 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=99.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCc-ccccceeeEEe-----CCceEEEEEcCCCCCccCCCchhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGV-TRDRMYGRSFW-----GEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~t-t~~~~~~~~~~-----~~~~~~liDTPG~~~~~~~~~~~~~~~~ 236 (381)
..+|+++|.+|||||||+|++++......+.+..| +.+.....+.. ....+.+|||||...+....
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-------- 73 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH-------- 73 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS--------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh--------
Confidence 35899999999999999999998632222322222 12221111111 24568899999986533211
Q ss_pred hhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCC-hhH-HHHHHHHHHhCCCCeEEEEEeCcc
Q 016883 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT-AAD-EEIADWLRKNYMDKFIILAVNKCE 314 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~-~~~-~~~~~~l~~~~~~~p~ivV~NK~D 314 (381)
..++..+|++++|+|.+++.. ... ..|+..+.....+.|+++|+||+|
T Consensus 74 ------------------------------~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~D 123 (184)
T 2zej_A 74 ------------------------------PHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLD 123 (184)
T ss_dssp ------------------------------HHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred ------------------------------HHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCC
Confidence 134567999999999987532 222 345555555445899999999999
Q ss_pred CCCcccch----h--HHH-hhCCCc----eEEEecCCCC-CHHHHHHHHHHHhhhcc
Q 016883 315 SPRKGIMQ----V--SEF-WSLGFS----PLPISAISGT-GTGELLDLVCSELKKVE 359 (381)
Q Consensus 315 l~~~~~~~----~--~~~-~~~~~~----~~~vSA~~g~-gi~~l~~~i~~~l~~~~ 359 (381)
+....... . ..+ ...+.+ ++++||++|. |+++|++.|.+.+.+..
T Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 124 VSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp GCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred cccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhccc
Confidence 97643321 1 111 123555 8999999997 99999999998876544
No 135
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.78 E-value=5.6e-19 Score=179.66 Aligned_cols=154 Identities=23% Similarity=0.242 Sum_probs=113.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC----c--ccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN----R--AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~----~--~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 236 (381)
.++|+++|++++|||||+|+|++.. . ......+++|.+..+..+.+++..+.+|||||+.++
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~------------ 86 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL------------ 86 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH------------
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH------------
Confidence 4689999999999999999999865 1 123345567777777677778889999999998542
Q ss_pred hhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCC
Q 016883 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP 316 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~ 316 (381)
.+.....+..+|++++|+|++++...++.+.+..+... ++|+++|+||+|+.
T Consensus 87 --------------------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 87 --------------------------IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF--NIPIIVVITKSDNA 138 (482)
T ss_dssp --------------------------HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT--TCCBCEEEECTTSS
T ss_pred --------------------------HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc--CCCEEEEEECCCcc
Confidence 12455677899999999999999888888888877765 89999999999998
Q ss_pred Ccccchh----H-HH-hhC----CCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 317 RKGIMQV----S-EF-WSL----GFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 317 ~~~~~~~----~-~~-~~~----~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
+.+..+. . .+ ... +.+++++||++|+|+++|+++|.+.+.
T Consensus 139 ~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 139 GTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 7432211 1 11 112 568999999999999999999999775
No 136
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.78 E-value=1e-18 Score=175.83 Aligned_cols=150 Identities=15% Similarity=0.195 Sum_probs=108.1
Q ss_pred CCCCCEEEEEcCCCCChhHHHHHHhCCCccc------------------------------ccCCCCcccccceeeEEeC
Q 016883 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAI------------------------------VVDEPGVTRDRMYGRSFWG 209 (381)
Q Consensus 160 ~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~------------------------------~~~~~~tt~~~~~~~~~~~ 209 (381)
.....+|+++|++|+|||||+|+|++..... ....+++|.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 3456799999999999999999996542111 1122467777777777778
Q ss_pred CceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCC--
Q 016883 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT-- 287 (381)
Q Consensus 210 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~-- 287 (381)
+..+.||||||+.++. +.+..++..+|++++|+|++++..
T Consensus 94 ~~~~~iiDTPGh~~f~--------------------------------------~~~~~~~~~aD~~ilVVDa~~g~~e~ 135 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFV--------------------------------------PNMIGGASQADLAVLVISARKGEFET 135 (439)
T ss_pred CeEEEEEECCChHHHH--------------------------------------HHHHhhHhhCCEEEEEEECCCCcccc
Confidence 8899999999986532 244566788999999999998765
Q ss_pred -----hhHHHHHHHHHHhCCCCe-EEEEEeCccCCCccc----ch----hH-HH-hhC------CCceEEEecCCCCCHH
Q 016883 288 -----AADEEIADWLRKNYMDKF-IILAVNKCESPRKGI----MQ----VS-EF-WSL------GFSPLPISAISGTGTG 345 (381)
Q Consensus 288 -----~~~~~~~~~l~~~~~~~p-~ivV~NK~Dl~~~~~----~~----~~-~~-~~~------~~~~~~vSA~~g~gi~ 345 (381)
.+..+.+..+... ++| +++|+||+|+...+. .+ .. .+ ... +.+++++||++|.|++
T Consensus 136 ~~~~~~qt~e~l~~~~~~--~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~ 213 (439)
T 3j2k_7 136 GFEKGGQTREHAMLAKTA--GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLK 213 (439)
T ss_pred ccCCCchHHHHHHHHHHc--CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccc
Confidence 4667777766665 777 999999999964211 11 11 11 111 4579999999999999
Q ss_pred HHHH
Q 016883 346 ELLD 349 (381)
Q Consensus 346 ~l~~ 349 (381)
++.+
T Consensus 214 ~l~~ 217 (439)
T 3j2k_7 214 EQSD 217 (439)
T ss_pred cccc
Confidence 9654
No 137
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.78 E-value=1.5e-18 Score=176.96 Aligned_cols=157 Identities=18% Similarity=0.158 Sum_probs=111.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..+|+++|.+|||||||+|+|++.... ... .|.......+.+.+..+.+|||||...+...
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~--~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------------- 382 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSV--TTI--PTVGFNVETVTYKNVKFNVWDVGGQDKIRPL--------------- 382 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--CCC--CCSSEEEEEEESSSCEEEEEEECCCGGGSGG---------------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCC--CcC--CccceeEEEEEeCCEEEEEEECCCcHHHHHH---------------
Confidence 469999999999999999999987632 222 3555666667778889999999998765432
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHH--hCCCCeEEEEEeCccCCCcc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK--NYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~--~~~~~p~ivV~NK~Dl~~~~ 319 (381)
+..++..+|++|+|+|++++.+..+ ..++..+.+ ...++|+++|+||+|+....
T Consensus 383 -----------------------~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 439 (497)
T 3lvq_E 383 -----------------------WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM 439 (497)
T ss_dssp -----------------------GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC
T ss_pred -----------------------HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC
Confidence 2256789999999999997644433 223333322 12489999999999997643
Q ss_pred cchhHH-Hh------hCCCceEEEecCCCCCHHHHHHHHHHHhhhcccc
Q 016883 320 IMQVSE-FW------SLGFSPLPISAISGTGTGELLDLVCSELKKVEVC 361 (381)
Q Consensus 320 ~~~~~~-~~------~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~~ 361 (381)
...... .. ..+++++++||++|+|+++++++|.+.+++....
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 440 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-----
T ss_pred CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 322221 11 1234689999999999999999999998876643
No 138
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.78 E-value=9.3e-19 Score=167.90 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=111.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCce--EEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
..+|+++|.+|+|||||++++++... .....+++.......+..++.. +.+|||||+.......
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------ 220 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR------------ 220 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTG------------
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHH------------
Confidence 45899999999999999999997653 3445555555544455556655 4599999987654322
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH--HHHHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~--~~~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
..++..+|++++|+|++++.+..+. .|+..+.....++|+++|+||+|+...
T Consensus 221 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 221 --------------------------PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp --------------------------GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred --------------------------HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 2456789999999999876554443 466667665568999999999998653
Q ss_pred cc------------ch---hHHH-hhCCC-ceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 319 GI------------MQ---VSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 319 ~~------------~~---~~~~-~~~~~-~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.. .. ...+ ...+. +++++||++|.|+++++++|.+.+.+
T Consensus 275 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 11 00 1111 23454 89999999999999999999887643
No 139
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.78 E-value=1.7e-18 Score=166.13 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=114.7
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe-CCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.+|+++|.+|||||||+|++++.....++..+++|.+.....+.+ ++..+.+|||||+.++..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------------- 67 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME---------------- 67 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh----------------
Confidence 489999999999999999999886556667788888887777665 456789999999864310
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHH-HH---HHHHHHhCCCCeEEEEEeCccCCCc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EI---ADWLRKNYMDKFIILAVNKCESPRK 318 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~-~~---~~~l~~~~~~~p~ivV~NK~Dl~~~ 318 (381)
.+.......++..+|++++|+|+++..+..+. .| +..+.....+.|+++|+||+|+...
T Consensus 68 -----------------~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 68 -----------------NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp -----------------HHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred -----------------hhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 00112344567899999999999987655553 23 3334444568999999999999873
Q ss_pred ccch---------hHHH-hhCC---CceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 319 GIMQ---------VSEF-WSLG---FSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 319 ~~~~---------~~~~-~~~~---~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.... ...+ ...+ .+++++||++ .|+.+++..+.+.+.
T Consensus 131 ~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 131 DKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHc
Confidence 2221 1111 2334 6899999999 889988888777553
No 140
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.77 E-value=2.1e-19 Score=182.82 Aligned_cols=152 Identities=20% Similarity=0.266 Sum_probs=115.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhcc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~ 241 (381)
+.++|+++|++|+|||||+++|.+... ..+..+++|.+.....+.+++..+.||||||+.++.....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v-~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~------------ 69 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV-ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRA------------ 69 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH-SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBC------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC-ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHH------------
Confidence 367999999999999999999987542 2344456777666656666778899999999987655332
Q ss_pred CCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc-
Q 016883 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (381)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~- 320 (381)
..+..+|++++|+|++++...+..+.+..+... +.|+++|+||+|+.....
T Consensus 70 --------------------------~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~--~vPiIVviNKiDl~~~~~~ 121 (501)
T 1zo1_I 70 --------------------------RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA--QVPVVVAVNKIDKPEADPD 121 (501)
T ss_dssp --------------------------SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT--TCCEEEEEECSSSSTTCCC
T ss_pred --------------------------HHHhhCCEEEEEeecccCccHHHHHHHHHHHhc--CceEEEEEEeccccccCHH
Confidence 345789999999999998888888887777765 899999999999975321
Q ss_pred --chhH---HH----hhCCCceEEEecCCCCCHHHHHHHHHHH
Q 016883 321 --MQVS---EF----WSLGFSPLPISAISGTGTGELLDLVCSE 354 (381)
Q Consensus 321 --~~~~---~~----~~~~~~~~~vSA~~g~gi~~l~~~i~~~ 354 (381)
.... .. +....+++++||++|.|+++|+++|...
T Consensus 122 ~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 122 RVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred HHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence 1111 00 1123589999999999999999998753
No 141
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.77 E-value=3.2e-18 Score=159.19 Aligned_cols=170 Identities=18% Similarity=0.180 Sum_probs=115.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCC-CcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
...+|+++|.+|||||||+|+|++.........+ ++|..........++..+.+|||||+.+.....
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~------------ 87 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSK------------ 87 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHH------------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCc------------
Confidence 3569999999999999999999998754333322 477777777778889999999999996532211
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhC----CCCeEEEEEeCccCC
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY----MDKFIILAVNKCESP 316 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~----~~~p~ivV~NK~Dl~ 316 (381)
...+...+.+........+|++++|+|+++ ++..+..+++.+.+.+ .+.|+++|.||+|+.
T Consensus 88 --------------~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~ 152 (247)
T 3lxw_A 88 --------------TDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA 152 (247)
T ss_dssp --------------HSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred --------------HHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC
Confidence 000111112222334488999999999984 7777777777777643 268999999999997
Q ss_pred CcccchhH--------H--HhhCCCceEEEecCC-----CCCHHHHHHHHHHHhhhc
Q 016883 317 RKGIMQVS--------E--FWSLGFSPLPISAIS-----GTGTGELLDLVCSELKKV 358 (381)
Q Consensus 317 ~~~~~~~~--------~--~~~~~~~~~~vSA~~-----g~gi~~l~~~i~~~l~~~ 358 (381)
.....+.. . ....+..++.+++.. +.|+++|++.|.+.+.+.
T Consensus 153 ~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 153 GGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 64322111 1 123455666666554 689999999999998863
No 142
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.77 E-value=1.9e-18 Score=171.95 Aligned_cols=159 Identities=14% Similarity=0.082 Sum_probs=108.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcc--------------cccc-----eeeEEeCCceEEEEEcCCC
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT--------------RDRM-----YGRSFWGEHEFMLVDTGGV 221 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt--------------~~~~-----~~~~~~~~~~~~liDTPG~ 221 (381)
...++|+++|++|+|||||+|+|++...........++ .... ..........+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 44679999999999999999999985321111010000 0000 0000111257899999998
Q ss_pred CCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC-ChhHHHHHHHHHHh
Q 016883 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIADWLRKN 300 (381)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~-~~~~~~~~~~l~~~ 300 (381)
.++. ..+...+..+|++++|+|++++. ..+..+++..+...
T Consensus 86 ~~~~--------------------------------------~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~ 127 (403)
T 3sjy_A 86 EVLM--------------------------------------ATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII 127 (403)
T ss_dssp GGGH--------------------------------------HHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH
T ss_pred HHHH--------------------------------------HHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc
Confidence 6432 24556778999999999999986 66777777776654
Q ss_pred CCCCeEEEEEeCccCCCcccchh----H-HHh----hCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 301 YMDKFIILAVNKCESPRKGIMQV----S-EFW----SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 301 ~~~~p~ivV~NK~Dl~~~~~~~~----~-~~~----~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
...|+++|+||+|+.+...... . ... ..+.+++++||++|+|+++|+++|.+.++..
T Consensus 128 -~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 128 -GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp -TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred -CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 2358999999999987542211 1 111 1256899999999999999999999977643
No 143
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.77 E-value=6.4e-19 Score=180.86 Aligned_cols=115 Identities=17% Similarity=0.245 Sum_probs=90.9
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcc---------------------cccCCCCcccccceeeEEeCCceEEEEEcCCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRA---------------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~---------------------~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~ 222 (381)
++|+++|++|+|||||+|+|+..... .....+++|.......+.+.+..+.||||||+.
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 48999999999999999999621100 001123556666666778888899999999997
Q ss_pred CccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCC
Q 016883 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~ 302 (381)
++.. .+..++..+|++|+|+|+.++...++..++..+...
T Consensus 94 df~~--------------------------------------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-- 133 (528)
T 3tr5_A 94 DFTE--------------------------------------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-- 133 (528)
T ss_dssp TCCH--------------------------------------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT--
T ss_pred hHHH--------------------------------------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--
Confidence 6542 455778899999999999999999988888888776
Q ss_pred CCeEEEEEeCccCCCc
Q 016883 303 DKFIILAVNKCESPRK 318 (381)
Q Consensus 303 ~~p~ivV~NK~Dl~~~ 318 (381)
++|+++|+||+|+...
T Consensus 134 ~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 134 HTPIMTFINKMDRDTR 149 (528)
T ss_dssp TCCEEEEEECTTSCCS
T ss_pred CCCEEEEEeCCCCccc
Confidence 8999999999999754
No 144
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.76 E-value=2.6e-18 Score=163.00 Aligned_cols=167 Identities=23% Similarity=0.284 Sum_probs=108.5
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcc-----cccCCCC----------------------cccccce----------
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA-----IVVDEPG----------------------VTRDRMY---------- 203 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~-----~~~~~~~----------------------tt~~~~~---------- 203 (381)
...++|+++|.+|||||||+|+|++.... .++..|+ +|.+...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 44679999999999999999999998653 2233342 3322100
Q ss_pred -------------eeEEe-CCceEEEEEcCCCCCccC--CCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHH
Q 016883 204 -------------GRSFW-GEHEFMLVDTGGVLNVSK--SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQAT 267 (381)
Q Consensus 204 -------------~~~~~-~~~~~~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (381)
..+.. .+..+.||||||+..... ....+. ..+...+.
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~---------------------------~~~~~~~~ 156 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIE---------------------------FQIRDMLM 156 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHH---------------------------HHHHHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHH---------------------------HHHHHHHH
Confidence 00011 135789999999975321 011110 11233556
Q ss_pred HHhccccEEE-EEEeCCCCCChhHH-HHHHHHHHhCCCCeEEEEEeCccCCCccc--chhHHH--hhC--C-CceEEEec
Q 016883 268 AAIEESCVII-FLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEF--WSL--G-FSPLPISA 338 (381)
Q Consensus 268 ~~l~~~d~ii-~VvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~--~~~--~-~~~~~vSA 338 (381)
.++..++.++ +|+|++.++...+. .++..+... +.|+++|+||+|+.+... .+.... ... + .+++++||
T Consensus 157 ~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~--~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA 234 (299)
T 2aka_B 157 QFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQ 234 (299)
T ss_dssp HHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT--CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCC
T ss_pred HHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCC--CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCCh
Confidence 6777877665 79999887776663 466666544 899999999999986533 111111 111 2 26789999
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 016883 339 ISGTGTGELLDLVCSELK 356 (381)
Q Consensus 339 ~~g~gi~~l~~~i~~~l~ 356 (381)
++|.|+++++++|.+..+
T Consensus 235 ~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 235 KDIDGKKDITAALAAERK 252 (299)
T ss_dssp BCTTSCBCHHHHHHHHHH
T ss_pred hhccccccHHHHHHHHHH
Confidence 999999999999887543
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.75 E-value=9.5e-18 Score=167.13 Aligned_cols=157 Identities=17% Similarity=0.097 Sum_probs=102.2
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCccc--ccCCCCcccccceeeEEe---------------C--------CceEEEE
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRSFW---------------G--------EHEFMLV 216 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~--~~~~~~tt~~~~~~~~~~---------------~--------~~~~~li 216 (381)
...+|+++|++++|||||+++|++..... ....++.|.+..+..... + ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45699999999999999999999753211 122245555443322211 1 1568999
Q ss_pred EcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC-ChhHHHHHH
Q 016883 217 DTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIAD 295 (381)
Q Consensus 217 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~-~~~~~~~~~ 295 (381)
||||+.++. ......+..+|++++|+|++++. ..+..+.+.
T Consensus 87 DtPGh~~f~--------------------------------------~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~ 128 (408)
T 1s0u_A 87 DSPGHETLM--------------------------------------ATMLSGASLMDGAILVIAANEPCPQPQTKEHLM 128 (408)
T ss_dssp ECSSHHHHH--------------------------------------HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH
T ss_pred ECCCHHHHH--------------------------------------HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH
Confidence 999985421 23344567789999999999886 667777766
Q ss_pred HHHHhCCCCeEEEEEeCccCCCcccc----hh-HHHh----hCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 296 WLRKNYMDKFIILAVNKCESPRKGIM----QV-SEFW----SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 296 ~l~~~~~~~p~ivV~NK~Dl~~~~~~----~~-~~~~----~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.+... ...|+++|+||+|+.+.... +. ..+. ..+.+++++||++|+|+++|+++|.+.++.
T Consensus 129 ~~~~l-~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 129 ALEIL-GIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHT-TCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHc-CCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 66543 24589999999999865321 11 1111 135689999999999999999999987764
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.74 E-value=9e-18 Score=167.35 Aligned_cols=156 Identities=20% Similarity=0.149 Sum_probs=110.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcc--cccCCCCcccccceeeEEe---------------C--------CceEEEEE
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGRSFW---------------G--------EHEFMLVD 217 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~--~~~~~~~tt~~~~~~~~~~---------------~--------~~~~~liD 217 (381)
..+|+++|++++|||||+++|++.... .....++.|.+..+....+ . ...+.|||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 468999999999999999999965321 1122245565544332222 0 15689999
Q ss_pred cCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC-ChhHHHHHHH
Q 016883 218 TGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIADW 296 (381)
Q Consensus 218 TPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~-~~~~~~~~~~ 296 (381)
|||+.++. ......+..+|++++|+|++++. ..+..+.+..
T Consensus 90 tPGh~~f~--------------------------------------~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~ 131 (410)
T 1kk1_A 90 APGHEALM--------------------------------------TTMLAGASLMDGAILVIAANEPCPRPQTREHLMA 131 (410)
T ss_dssp CSSHHHHH--------------------------------------HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH
T ss_pred CCChHHHH--------------------------------------HHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH
Confidence 99985421 23445667899999999999886 6777777766
Q ss_pred HHHhCCCCeEEEEEeCccCCCcccc----hh-HHHhh----CCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 297 LRKNYMDKFIILAVNKCESPRKGIM----QV-SEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 297 l~~~~~~~p~ivV~NK~Dl~~~~~~----~~-~~~~~----~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+... ...|+++|+||+|+.+.... +. ..+.. .+.+++++||++|.|+++|+++|.+.++.
T Consensus 132 ~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 132 LQII-GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHc-CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 6554 23589999999999875321 11 11211 35689999999999999999999987764
No 147
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.74 E-value=9.5e-18 Score=165.05 Aligned_cols=143 Identities=17% Similarity=0.155 Sum_probs=111.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
+|+++|++|+|||||+++|+ ..++|.+.....+..++..+.+|||||+.++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~------------------- 74 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL------------------- 74 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH-------------------
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH-------------------
Confidence 89999999999999999998 23455556566666778889999999997632
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeE-EEEEe-CccCCCcccch
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI-ILAVN-KCESPRKGIMQ 322 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~-ivV~N-K~Dl~~~~~~~ 322 (381)
......+..+|++++|+| +.+...+..+++..+... ++|. ++|+| |+|+ +.+..+
T Consensus 75 -------------------~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~ 131 (370)
T 2elf_A 75 -------------------KSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAID 131 (370)
T ss_dssp -------------------HHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHH
T ss_pred -------------------HHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHH
Confidence 234456689999999999 888888888888877766 7888 99999 9999 543221
Q ss_pred ----hHH-Hh-h---CCCceEE--EecCC---CCCHHHHHHHHHHHhhhc
Q 016883 323 ----VSE-FW-S---LGFSPLP--ISAIS---GTGTGELLDLVCSELKKV 358 (381)
Q Consensus 323 ----~~~-~~-~---~~~~~~~--vSA~~---g~gi~~l~~~i~~~l~~~ 358 (381)
... +. . ...++++ +||++ |+|+++|++.|.+.++..
T Consensus 132 ~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 132 ELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence 111 11 1 2368999 99999 999999999999887653
No 148
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.74 E-value=1.5e-17 Score=172.77 Aligned_cols=153 Identities=24% Similarity=0.300 Sum_probs=108.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCC-CcccccceeeEE------------------eCCceEEEEEcCCCCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGRSF------------------WGEHEFMLVDTGGVLN 223 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~-~tt~~~~~~~~~------------------~~~~~~~liDTPG~~~ 223 (381)
.++|+++|++|+|||||+++|++.... ...+ +.|.+....... +....+.||||||+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 569999999999999999999875421 1112 333332221111 1122589999999988
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+..... .++..+|++++|+|++++...++.+.+..+... +
T Consensus 83 F~~~~~--------------------------------------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~--~ 122 (594)
T 1g7s_A 83 FTTLRK--------------------------------------RGGALADLAILIVDINEGFKPQTQEALNILRMY--R 122 (594)
T ss_dssp CTTSBC--------------------------------------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT--T
T ss_pred HHHHHH--------------------------------------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc--C
Confidence 765333 345789999999999999988888888888776 8
Q ss_pred CeEEEEEeCccCCCcccc------------------h--------hH-HHh---------------hCCCceEEEecCCC
Q 016883 304 KFIILAVNKCESPRKGIM------------------Q--------VS-EFW---------------SLGFSPLPISAISG 341 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~~~~~------------------~--------~~-~~~---------------~~~~~~~~vSA~~g 341 (381)
+|+++|+||+|+...... + .. .+. ....+++++||++|
T Consensus 123 vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (594)
T ss_dssp CCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred CeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC
Confidence 999999999999642100 0 00 000 11238999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 016883 342 TGTGELLDLVCSELKK 357 (381)
Q Consensus 342 ~gi~~l~~~i~~~l~~ 357 (381)
.|+++|+++|...++.
T Consensus 203 ~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 203 EGIPELLTMLMGLAQQ 218 (594)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHhhccc
Confidence 9999999999987764
No 149
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.74 E-value=1.4e-17 Score=172.97 Aligned_cols=157 Identities=20% Similarity=0.260 Sum_probs=105.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCccc--------c------cCCCCcccccceeeEEeC-----CceEEEEEcCCCCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI--------V------VDEPGVTRDRMYGRSFWG-----EHEFMLVDTGGVLN 223 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~--------~------~~~~~tt~~~~~~~~~~~-----~~~~~liDTPG~~~ 223 (381)
..+|+++|++|+|||||+++|+...... . ....+.|.......+.+. +..+.||||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3489999999999999999998531100 0 112345555544445443 24688999999976
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+.. ....++..+|++++|+|++++...++...+...... +
T Consensus 84 F~~--------------------------------------ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~--~ 123 (599)
T 3cb4_D 84 FSY--------------------------------------EVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM--D 123 (599)
T ss_dssp GHH--------------------------------------HHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT--T
T ss_pred HHH--------------------------------------HHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--C
Confidence 432 344667889999999999999888887766666555 8
Q ss_pred CeEEEEEeCccCCCcccchhHH-H-hhCCC---ceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 304 KFIILAVNKCESPRKGIMQVSE-F-WSLGF---SPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~~~~~~~~~-~-~~~~~---~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+|+++|+||+|+.......... + ...+. +++++||++|.|+++++++|.+.++...
T Consensus 124 ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 124 LEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp CEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred CCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 9999999999998754322111 1 12343 5899999999999999999999887543
No 150
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.73 E-value=1e-17 Score=173.73 Aligned_cols=157 Identities=25% Similarity=0.342 Sum_probs=108.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCccc--------------ccCCCCcccccceeeEEeC---C--ceEEEEEcCCCCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI--------------VVDEPGVTRDRMYGRSFWG---E--HEFMLVDTGGVLN 223 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~--------------~~~~~~tt~~~~~~~~~~~---~--~~~~liDTPG~~~ 223 (381)
.++|+++|++|+|||||+++|+...... .....+.|.......+.+. + ..+.||||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4489999999999999999997531000 0112344554444444443 2 4678999999976
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+.. .+..++..+|++++|+|++++...++...+...... +
T Consensus 86 F~~--------------------------------------ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~--~ 125 (600)
T 2ywe_A 86 FSY--------------------------------------EVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ--D 125 (600)
T ss_dssp GHH--------------------------------------HHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT--T
T ss_pred HHH--------------------------------------HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC--C
Confidence 432 344567899999999999999888887766666665 8
Q ss_pred CeEEEEEeCccCCCcccchhHH-H-hhCCC---ceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 304 KFIILAVNKCESPRKGIMQVSE-F-WSLGF---SPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~~~~~~~~~-~-~~~~~---~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.|+++|+||+|+.......... . ...+. +++++||++|.|+++++++|.+.++...
T Consensus 126 ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 126 LVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp CEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred CCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 9999999999998654322211 1 12344 5899999999999999999999887543
No 151
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.73 E-value=7.7e-18 Score=171.35 Aligned_cols=145 Identities=22% Similarity=0.223 Sum_probs=102.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCc------------------------------ccccCCCCcccccceeeEEeCCce
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNR------------------------------AIVVDEPGVTRDRMYGRSFWGEHE 212 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~------------------------------~~~~~~~~tt~~~~~~~~~~~~~~ 212 (381)
..+|+++|++|+|||||+|+|++... ......+++|.+.....+...+..
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 112 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence 45999999999999999999975410 111223467777777777778889
Q ss_pred EEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC-------
Q 016883 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------- 285 (381)
Q Consensus 213 ~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~------- 285 (381)
+.||||||+.++. ..+..++..+|++++|+|++++
T Consensus 113 ~~iiDTPG~~~f~--------------------------------------~~~~~~~~~aD~~llVvDa~~g~~~~~~~ 154 (483)
T 3p26_A 113 FTIVDAPGHRDFV--------------------------------------PNAIMGISQADMAILCVDCSTNAFESGFD 154 (483)
T ss_dssp EEEECCCCCGGGH--------------------------------------HHHHHHHTTCSEEEEEEECCC------CC
T ss_pred EEEEECCCcHHHH--------------------------------------HHHHHhhhhCCEEEEEEECCCCccccccc
Confidence 9999999996532 3555678899999999999986
Q ss_pred CChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc--ch----hH-HH-h--hC---CCceEEEecCCCCCHHH
Q 016883 286 LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQ----VS-EF-W--SL---GFSPLPISAISGTGTGE 346 (381)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~--~~----~~-~~-~--~~---~~~~~~vSA~~g~gi~~ 346 (381)
...+..+.+..+... ...|+++|+||+|+.+... .+ .. .+ . .. +.+++++||++|+|+++
T Consensus 155 ~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 155 LDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 445666666666654 2356999999999976321 11 11 11 1 11 45789999999999985
No 152
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.73 E-value=6e-18 Score=168.37 Aligned_cols=155 Identities=16% Similarity=0.122 Sum_probs=113.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC--cc------c---cc-----CCCCcccccceeeEEeCCceEEEEEcCCCCCccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN--RA------I---VV-----DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~--~~------~---~~-----~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~ 226 (381)
..+|+++|++|+|||||+|+|++.. .. . .. ...+.|.+.....+...+..+.+|||||+.++.
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~- 89 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI- 89 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH-
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH-
Confidence 4589999999999999999998731 00 0 00 123455555444556667889999999997532
Q ss_pred CCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe-
Q 016883 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p- 305 (381)
..+..++..+|++++|+|++++...+..+++..+... ++|
T Consensus 90 -------------------------------------~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~--~ip~ 130 (405)
T 2c78_A 90 -------------------------------------KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPY 130 (405)
T ss_dssp -------------------------------------HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT--TCCC
T ss_pred -------------------------------------HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCE
Confidence 2445667899999999999999888888888877765 888
Q ss_pred EEEEEeCccCCCc-ccch----hH-HH-hhC-----CCceEEEecCCCCC------------------HHHHHHHHHHHh
Q 016883 306 IILAVNKCESPRK-GIMQ----VS-EF-WSL-----GFSPLPISAISGTG------------------TGELLDLVCSEL 355 (381)
Q Consensus 306 ~ivV~NK~Dl~~~-~~~~----~~-~~-~~~-----~~~~~~vSA~~g~g------------------i~~l~~~i~~~l 355 (381)
+++|+||+|+... ...+ .. .+ ... ..+++++||++|.| +++|++.|.+.+
T Consensus 131 iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 131 IVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp EEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred EEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 8899999999852 2111 11 11 112 36899999999987 888888888877
Q ss_pred hh
Q 016883 356 KK 357 (381)
Q Consensus 356 ~~ 357 (381)
+.
T Consensus 211 p~ 212 (405)
T 2c78_A 211 PT 212 (405)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 153
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.72 E-value=1.7e-17 Score=166.51 Aligned_cols=145 Identities=22% Similarity=0.291 Sum_probs=101.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCccc----------ccCC----------------------CCcccccceeeEEeCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI----------VVDE----------------------PGVTRDRMYGRSFWGE 210 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~----------~~~~----------------------~~tt~~~~~~~~~~~~ 210 (381)
..+|+++|++|+|||||+|+|++..... .+.. .+.|.+.....+...+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 4589999999999999999998643111 1111 1334443444455567
Q ss_pred ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH
Q 016883 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (381)
Q Consensus 211 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~ 290 (381)
..+.+|||||+.++. .....++..+|++++|+|++++...+.
T Consensus 104 ~~~~iiDtpGh~~f~--------------------------------------~~~~~~~~~aD~~ilVvDa~~g~~~qt 145 (434)
T 1zun_B 104 RKFIIADTPGHEQYT--------------------------------------RNMATGASTCDLAIILVDARYGVQTQT 145 (434)
T ss_dssp EEEEEEECCCSGGGH--------------------------------------HHHHHHHTTCSEEEEEEETTTCSCHHH
T ss_pred ceEEEEECCChHHHH--------------------------------------HHHHHHHhhCCEEEEEEECCCCCcHHH
Confidence 789999999987532 134456789999999999999988888
Q ss_pred HHHHHHHHHhCCCC-eEEEEEeCccCCCccc--c----hhH-HH-hhCC-----CceEEEecCCCCCHHHH
Q 016883 291 EEIADWLRKNYMDK-FIILAVNKCESPRKGI--M----QVS-EF-WSLG-----FSPLPISAISGTGTGEL 347 (381)
Q Consensus 291 ~~~~~~l~~~~~~~-p~ivV~NK~Dl~~~~~--~----~~~-~~-~~~~-----~~~~~vSA~~g~gi~~l 347 (381)
.+++..+... +. |+++|+||+|+.+... . +.. .+ ...+ .+++++||++|.|++++
T Consensus 146 ~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 146 RRHSYIASLL--GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 8877776654 54 6999999999986321 1 111 11 2234 57899999999999984
No 154
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.72 E-value=1e-16 Score=153.41 Aligned_cols=171 Identities=23% Similarity=0.239 Sum_probs=105.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCc-----ccccCCC---Ccccccc-------------------------------
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNR-----AIVVDEP---GVTRDRM------------------------------- 202 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~-----~~~~~~~---~tt~~~~------------------------------- 202 (381)
..++|+++|.+|+|||||+|+|++... ..++..+ .+++...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 467999999999999999999999864 2222333 1222100
Q ss_pred -------------------eee-EEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHH
Q 016883 203 -------------------YGR-SFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMI 262 (381)
Q Consensus 203 -------------------~~~-~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (381)
... ....+..+.||||||+........ ...+...+
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~-------------------------~~~~~~~~ 157 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQ-------------------------PTDIEQQI 157 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC----------------------------------CSHHHH
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCC-------------------------chhHHHHH
Confidence 000 111345799999999965221000 01122233
Q ss_pred HHHHHHHhccccEEEEEEeC-CCCCChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCccc--chhHHH--hhCCCceE--
Q 016883 263 ERQATAAIEESCVIIFLVDG-QAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEF--WSLGFSPL-- 334 (381)
Q Consensus 263 ~~~~~~~l~~~d~ii~VvD~-~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~--~~~~~~~~-- 334 (381)
...+..++..+|++++|+|+ +.++...+ ..++..+... +.|+++|+||+|+..... .+.... ...+..++
T Consensus 158 ~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~--~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v 235 (315)
T 1jwy_B 158 RRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE--GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGV 235 (315)
T ss_dssp HHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS--CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEEC
T ss_pred HHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCC--CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEE
Confidence 45677888999999999997 44555444 4666666654 899999999999986543 222211 11123444
Q ss_pred -EEecCC---CCCHHHHHHHHHHHhhhcc
Q 016883 335 -PISAIS---GTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 335 -~vSA~~---g~gi~~l~~~i~~~l~~~~ 359 (381)
.+||.+ |.|++++++.+.+.++...
T Consensus 236 ~~~sa~~~~~~~gv~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 236 INRSQEDIIAKKSIRESLKSEILYFKNHP 264 (315)
T ss_dssp CCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred ecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence 455566 8999999999999887543
No 155
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.71 E-value=2e-17 Score=170.26 Aligned_cols=155 Identities=18% Similarity=0.166 Sum_probs=101.3
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCccccccee--------eEEe----CCceEEEEEcCCCCCccCCCc
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG--------RSFW----GEHEFMLVDTGGVLNVSKSQP 229 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~--------~~~~----~~~~~~liDTPG~~~~~~~~~ 229 (381)
...+|+++|.+|||||||+|++++.... .....|. ..... .+.. .+..+.+|||||.........
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~~~~~t~-g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFD--PKESQTH-GLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcc-ceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3569999999999999999999987532 1111111 11110 1111 246799999999765543222
Q ss_pred hhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEE
Q 016883 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILA 309 (381)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV 309 (381)
.++..+|++++|+|+++. .....|+..+.....+.|+++|
T Consensus 117 --------------------------------------~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV 156 (535)
T 3dpu_A 117 --------------------------------------FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVV 156 (535)
T ss_dssp --------------------------------------HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEE
T ss_pred --------------------------------------HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEE
Confidence 345689999999999753 3345677888876557999999
Q ss_pred EeCccCCCcccchhHH----HhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 310 VNKCESPRKGIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 310 ~NK~Dl~~~~~~~~~~----~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+||+|+.......... ....+.+++++||++|.|+++++++|.+.+.+..
T Consensus 157 ~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 157 MNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp ECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred EECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhccc
Confidence 9999997644322211 1345678999999999999999999999887643
No 156
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.71 E-value=1.1e-17 Score=166.19 Aligned_cols=154 Identities=16% Similarity=0.134 Sum_probs=111.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCc--c--c-----------ccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNR--A--I-----------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~--~--~-----------~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~ 228 (381)
.+|+++|++|+|||||+++|++... . . .....+.|.+.....+...+..+.||||||+.++.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~--- 80 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV--- 80 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH---
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH---
Confidence 4899999999999999999987410 0 0 00123455555444455567889999999996421
Q ss_pred chhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe-EE
Q 016883 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-II 307 (381)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p-~i 307 (381)
.....++..+|++++|+|++++...+..+++..+... ++| ++
T Consensus 81 -----------------------------------~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~vp~ii 123 (397)
T 1d2e_A 81 -----------------------------------KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI--GVEHVV 123 (397)
T ss_dssp -----------------------------------HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCCEE
T ss_pred -----------------------------------HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCeEE
Confidence 2445667899999999999999888888888777665 888 68
Q ss_pred EEEeCccCCCcc-cch-----hHHH-hhC-----CCceEEEecCCCCC----------HHHHHHHHHHHhhh
Q 016883 308 LAVNKCESPRKG-IMQ-----VSEF-WSL-----GFSPLPISAISGTG----------TGELLDLVCSELKK 357 (381)
Q Consensus 308 vV~NK~Dl~~~~-~~~-----~~~~-~~~-----~~~~~~vSA~~g~g----------i~~l~~~i~~~l~~ 357 (381)
+|+||+|+.+.. ..+ ...+ ... ..+++++||++|.| +++|++.|.+.++.
T Consensus 124 vviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 124 VYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp EEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 999999998522 111 1111 112 36899999999774 89999999987764
No 157
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.71 E-value=1.3e-16 Score=142.31 Aligned_cols=157 Identities=19% Similarity=0.207 Sum_probs=107.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCc--eEEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|++|||||||+++|++..... ...+..+.......+.+++. .+.+|||||........
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~------------ 71 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT------------ 71 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC------------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh------------
Confidence 3589999999999999999999875322 12222233334445666664 46789999986543321
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
..++..+|++++|+|..+..+..+ ..++..+... ..+.|+++|+||+|+...
T Consensus 72 --------------------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 72 --------------------------SAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp --------------------------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred --------------------------HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 134568999999999987544333 2455555442 247899999999999653
Q ss_pred ccc---hhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 319 ~~~---~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
... ....+ ...++.++.+||+++.|+++++++|.+.+.+.
T Consensus 126 ~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 169 (199)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 221 11122 34567889999999999999999999877643
No 158
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.71 E-value=1.7e-17 Score=175.62 Aligned_cols=160 Identities=18% Similarity=0.258 Sum_probs=111.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCc--------------ccccce-------------------------
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGV--------------TRDRMY------------------------- 203 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~t--------------t~~~~~------------------------- 203 (381)
.++|+++|.+|+|||||+|+|++.....++..|+| |.....
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 56999999999999999999999876666666655 211100
Q ss_pred --------------eeEEeCC----ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHH
Q 016883 204 --------------GRSFWGE----HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQ 265 (381)
Q Consensus 204 --------------~~~~~~~----~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (381)
..+.++. ..+.||||||+.+.... ...
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~-----------------------------------~~~ 193 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEAR-----------------------------------NEL 193 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTC-----------------------------------HHH
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhH-----------------------------------HHH
Confidence 0000000 36899999998753210 135
Q ss_pred HHHHhccccEEEEEEeCCCCCChhHHHHHH-HHHHhCCCCeEEEEEeCccCCCcc---c-----ch-----hH-----HH
Q 016883 266 ATAAIEESCVIIFLVDGQAGLTAADEEIAD-WLRKNYMDKFIILAVNKCESPRKG---I-----MQ-----VS-----EF 326 (381)
Q Consensus 266 ~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~-~l~~~~~~~p~ivV~NK~Dl~~~~---~-----~~-----~~-----~~ 326 (381)
+..++..+|+++||+|++++.+..+.+.+. .+... +.|+++|+||+|+.... . .+ .. ..
T Consensus 194 ~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l 271 (695)
T 2j69_A 194 SLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANL 271 (695)
T ss_dssp HTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999888887766553 34433 78999999999987543 0 00 00 01
Q ss_pred h---h------CCCceEEEecC--------------CCCCHHHHHHHHHHHhhhcc
Q 016883 327 W---S------LGFSPLPISAI--------------SGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 327 ~---~------~~~~~~~vSA~--------------~g~gi~~l~~~i~~~l~~~~ 359 (381)
. . ...++++|||+ +|.|++++++.+.+.+....
T Consensus 272 ~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 272 AEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp GGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred HHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHhH
Confidence 1 1 12378999999 99999999999999876543
No 159
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.5e-17 Score=173.57 Aligned_cols=147 Identities=22% Similarity=0.248 Sum_probs=105.9
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccccC------------------------------CCCcccccceeeEEeCC
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVD------------------------------EPGVTRDRMYGRSFWGE 210 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~------------------------------~~~tt~~~~~~~~~~~~ 210 (381)
....+|+++|++|+|||||+|+|++........ .+|+|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 346799999999999999999999763211110 25677777777778888
Q ss_pred ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC-----
Q 016883 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG----- 285 (381)
Q Consensus 211 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~----- 285 (381)
..+.||||||+.++. +.+..++..+|++|+|+|++++
T Consensus 245 ~~~~iiDTPG~e~f~--------------------------------------~~~~~~~~~aD~~llVVDa~~g~~e~~ 286 (611)
T 3izq_1 245 ANFTIVDAPGHRDFV--------------------------------------PNAIMGISQADMAILCVDCSTNAFESG 286 (611)
T ss_dssp CEEEEEECCSSSCHH--------------------------------------HHHTTTSSCCSEEEEEEECSHHHHHTT
T ss_pred ceEEEEECCCCcccH--------------------------------------HHHHHHHhhcCceEEEEECCCCccccc
Confidence 899999999996532 2445667889999999999874
Q ss_pred --CChhHHHHHHHHHHhCCC-CeEEEEEeCccCCCccc--ch----hH-HH-hhC-----CCceEEEecCCCCCHHHH
Q 016883 286 --LTAADEEIADWLRKNYMD-KFIILAVNKCESPRKGI--MQ----VS-EF-WSL-----GFSPLPISAISGTGTGEL 347 (381)
Q Consensus 286 --~~~~~~~~~~~l~~~~~~-~p~ivV~NK~Dl~~~~~--~~----~~-~~-~~~-----~~~~~~vSA~~g~gi~~l 347 (381)
...+..+.+..+... + .|+|+|+||+|+.+... .+ .. .+ ... +.+++++||++|.|++++
T Consensus 287 ~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 287 FDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred chhhhHHHHHHHHHHHc--CCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 344556666666554 5 45999999999986221 11 11 11 111 458999999999999865
No 160
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=152.41 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=61.0
Q ss_pred cccEEEEEEeCCCC--CChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCcccchhH-HHh-h-CCCceEEEecCCCCC
Q 016883 272 ESCVIIFLVDGQAG--LTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRKGIMQVS-EFW-S-LGFSPLPISAISGTG 343 (381)
Q Consensus 272 ~~d~ii~VvD~~~~--~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~~~~~~~-~~~-~-~~~~~~~vSA~~g~g 343 (381)
++|++++|+|++++ .+... ..++..+.+. ..+.|+++|+||+|+......+.. .+. . .+.+++++||++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 69999999999876 55444 3455554432 247999999999999754332222 222 2 367899999999999
Q ss_pred HHHHHHHHHHHhh
Q 016883 344 TGELLDLVCSELK 356 (381)
Q Consensus 344 i~~l~~~i~~~l~ 356 (381)
+++++++|.+.+.
T Consensus 242 v~elf~~l~~~l~ 254 (255)
T 3c5h_A 242 VDLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 161
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.69 E-value=1.6e-18 Score=180.30 Aligned_cols=156 Identities=23% Similarity=0.233 Sum_probs=90.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCccc------------------------------ccCCCCcccccceeeEEeCC
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAI------------------------------VVDEPGVTRDRMYGRSFWGE 210 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~------------------------------~~~~~~tt~~~~~~~~~~~~ 210 (381)
....+|+++|++|+|||||+|+|++..... ....+++|.+.....+..++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 446789999999999999999996431100 11134677777777777777
Q ss_pred ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC----
Q 016883 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL---- 286 (381)
Q Consensus 211 ~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~---- 286 (381)
..+.||||||+.++..... ..+..+|++|+|+|++++.
T Consensus 255 ~~i~iiDTPGh~~f~~~~~--------------------------------------~~~~~aD~alLVVDa~~g~~e~g 296 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMI--------------------------------------AGASSADFAVLVVDSSQNNFERG 296 (592)
T ss_dssp ----CCEEESSSEEEEECC--------------------------------------C-------CCSEEEEEECCSSTT
T ss_pred eEEEEEECCChHHHHHHHH--------------------------------------HHHhhCCEEEEEEECCCCccccc
Confidence 8899999999987543211 3446799999999998753
Q ss_pred ---ChhHHHHHHHHHHhCCCCe-EEEEEeCccCCCcc--cch----hH-HHh--hCC-----CceEEEecCCCCCHH---
Q 016883 287 ---TAADEEIADWLRKNYMDKF-IILAVNKCESPRKG--IMQ----VS-EFW--SLG-----FSPLPISAISGTGTG--- 345 (381)
Q Consensus 287 ---~~~~~~~~~~l~~~~~~~p-~ivV~NK~Dl~~~~--~~~----~~-~~~--~~~-----~~~~~vSA~~g~gi~--- 345 (381)
..+..+.+..+... ++| +|+|+||+|+.+.. ... .. .+. ..+ .+++++||++|.|++
T Consensus 297 i~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~ 374 (592)
T 3mca_A 297 FLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKD 374 (592)
T ss_dssp SCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCC
T ss_pred cccchHHHHHHHHHHHc--CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCccccccc
Confidence 66777777777765 776 99999999997521 111 11 111 123 378999999999998
Q ss_pred -----------HHHHHHHHHhh
Q 016883 346 -----------ELLDLVCSELK 356 (381)
Q Consensus 346 -----------~l~~~i~~~l~ 356 (381)
.|++.|.+.+.
T Consensus 375 ~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 375 SSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccccccccchHHHHHHHHhhcc
Confidence 78888877654
No 162
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.5e-16 Score=156.28 Aligned_cols=126 Identities=20% Similarity=0.232 Sum_probs=94.0
Q ss_pred CCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhh
Q 016883 157 NVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (381)
Q Consensus 157 ~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~ 236 (381)
.+...+..+|+++|.||||||||+|+|++.. +.++++|+||++...+.+.+.+.++.++||||+........+
T Consensus 66 ~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~------ 138 (376)
T 4a9a_A 66 DVARTGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRG------ 138 (376)
T ss_dssp TBCBCSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----C------
T ss_pred eEeecCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhH------
Confidence 3456677899999999999999999999976 678999999999999999999999999999999865433221
Q ss_pred hhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHH---hCCCCeEEEEEeCc
Q 016883 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK---NYMDKFIILAVNKC 313 (381)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~---~~~~~p~ivV~NK~ 313 (381)
+..+++..++.||++++|+|++++....+ .+...+.. .+..+|.++++||+
T Consensus 139 -------------------------~g~~~l~~i~~ad~il~vvD~~~p~~~~~-~i~~EL~~~~~~l~~k~~~i~~nK~ 192 (376)
T 4a9a_A 139 -------------------------RGKQVIAVARTCNLLFIILDVNKPLHHKQ-IIEKELEGVGIRLNKTPPDILIKKK 192 (376)
T ss_dssp -------------------------HHHHHHHHHHHCSEEEEEEETTSHHHHHH-HHHHHHHHTTEEETCCCCCEEEEEC
T ss_pred -------------------------HHHHHHHHHHhcCccccccccCccHHHHH-HHHHHHHHhhHhhccCChhhhhhHh
Confidence 12466778889999999999987532221 12222322 12466777888888
Q ss_pred cC
Q 016883 314 ES 315 (381)
Q Consensus 314 Dl 315 (381)
|.
T Consensus 193 d~ 194 (376)
T 4a9a_A 193 EK 194 (376)
T ss_dssp SS
T ss_pred hh
Confidence 75
No 163
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.69 E-value=2.2e-16 Score=148.44 Aligned_cols=126 Identities=13% Similarity=0.153 Sum_probs=94.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|.+|+|||||+|+|++.....++..+++|.......+...+..+.+|||||+.++........+
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~--------- 109 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALN--------- 109 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHH---------
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHH---------
Confidence 45999999999999999999999876667777888877766667777888999999999875433221111
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHH--hccccEEEEEEeCCC-CCChhHHHHHHHHHHhCCC---CeEEEEEeCccCC
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQA-GLTAADEEIADWLRKNYMD---KFIILAVNKCESP 316 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~d~ii~VvD~~~-~~~~~~~~~~~~l~~~~~~---~p~ivV~NK~Dl~ 316 (381)
....+ ...+|+++||+|++. .++..+.+++..+.+.+.. .|+++|+||+|+.
T Consensus 110 ----------------------~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 110 ----------------------IIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp ----------------------HHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred ----------------------HHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 11122 347999999988765 5666677788877764322 6999999999997
Q ss_pred Ccc
Q 016883 317 RKG 319 (381)
Q Consensus 317 ~~~ 319 (381)
+..
T Consensus 168 ~~~ 170 (270)
T 1h65_A 168 PPD 170 (270)
T ss_dssp CGG
T ss_pred CcC
Confidence 643
No 164
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.68 E-value=5e-16 Score=139.22 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=103.4
Q ss_pred CCCCCCEEEEEcCCCCChhHHHHHHhCCC-cccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhh
Q 016883 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (381)
Q Consensus 159 ~~~~~~~v~l~G~~gvGKSSLin~L~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~ 237 (381)
+.....+|+++|++|||||||+|+|++.. ...+...+++|..... +.+++ .+.+|||||+........ ..+.
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~-~~~~--- 94 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEE-MKRK--- 94 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------C-CHHH---
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHH-HHHH---
Confidence 33345689999999999999999999875 3344556666654332 23333 678999999864211000 0000
Q ss_pred hhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
+...+ .........++.+++|+|+..+.+..+.++...+... +.|+++|.||+|+.+
T Consensus 95 --------------------~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 95 --------------------WQRAL-GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS--NIAVLVLLTKADKLA 151 (210)
T ss_dssp --------------------HHHHH-HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSC
T ss_pred --------------------HHHHH-HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEecccCCC
Confidence 00000 1111223568999999999988777666666666554 899999999999987
Q ss_pred cccchh----H-HH-hhC--CCceEEEecCCCCCHHHHHHHHHHHhhhc
Q 016883 318 KGIMQV----S-EF-WSL--GFSPLPISAISGTGTGELLDLVCSELKKV 358 (381)
Q Consensus 318 ~~~~~~----~-~~-~~~--~~~~~~vSA~~g~gi~~l~~~i~~~l~~~ 358 (381)
....+. . .. ... ...++++||+++.|+++++++|.+.+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 543221 1 11 122 34678999999999999999999887653
No 165
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.68 E-value=2.6e-17 Score=165.29 Aligned_cols=145 Identities=21% Similarity=0.230 Sum_probs=96.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC--cc----------------------------cccCCCCcccccceeeEEeCCce
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN--RA----------------------------IVVDEPGVTRDRMYGRSFWGEHE 212 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~--~~----------------------------~~~~~~~tt~~~~~~~~~~~~~~ 212 (381)
..+|+++|++|+|||||+++|+... .. .....+++|.+.....+...+..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 4589999999999999999998541 10 00113456766666667777888
Q ss_pred EEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC-------
Q 016883 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------- 285 (381)
Q Consensus 213 ~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~------- 285 (381)
+.||||||+.++. ..+..++..+|++++|+|++++
T Consensus 86 ~~iiDtpG~~~f~--------------------------------------~~~~~~~~~aD~~ilVvDa~~gsfe~~~~ 127 (435)
T 1jny_A 86 FTIIDAPGHRDFV--------------------------------------KNMITGASQADAAILVVSAKKGEYEAGMS 127 (435)
T ss_dssp EEECCCSSSTTHH--------------------------------------HHHHHTSSCCSEEEEEEECSTTHHHHHHS
T ss_pred EEEEECCCcHHHH--------------------------------------HHHHhhhhhcCEEEEEEECCCCccccccc
Confidence 9999999997632 2455677899999999999986
Q ss_pred CChhHHHHHHHHHHhCCCC-eEEEEEeCccCCCcc----c----chhH-HH-hhC-----CCceEEEecCCCCCHHHH
Q 016883 286 LTAADEEIADWLRKNYMDK-FIILAVNKCESPRKG----I----MQVS-EF-WSL-----GFSPLPISAISGTGTGEL 347 (381)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~-p~ivV~NK~Dl~~~~----~----~~~~-~~-~~~-----~~~~~~vSA~~g~gi~~l 347 (381)
+..+..+.+..+... +. ++++|+||+|+.+.. . .+.. .+ ... ..+++++||++|+|+.++
T Consensus 128 ~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 128 VEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp TTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred cchHHHHHHHHHHHc--CCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 555666666666554 54 689999999998631 1 1111 11 122 267999999999999854
No 166
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.68 E-value=7.1e-16 Score=137.05 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=105.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCce--EEEEEcCCCCCccCCCchhhhhhhhhhc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--~~liDTPG~~~~~~~~~~~~~~~~~~~~ 240 (381)
.++|+++|++|||||||++++.+..... ...+..+.+.....+.+++.. +.+|||||.........
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~----------- 96 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITS----------- 96 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCH-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhH-----------
Confidence 4699999999999999999999875422 222333333444556666654 45799999876443221
Q ss_pred cCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh-CCCCeEEEEEeCccCCCc
Q 016883 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ivV~NK~Dl~~~ 318 (381)
.++..++++++|+|..+..+..+ ..++..+.+. ..+.|+++|+||+|+...
T Consensus 97 ---------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 97 ---------------------------AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp ---------------------------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred ---------------------------HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 34567899999999886433322 2344444442 247899999999998653
Q ss_pred ccc---hhHHH-hhCCCceEEEecCCCCCHHHHHHHHHHHh
Q 016883 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (381)
Q Consensus 319 ~~~---~~~~~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l 355 (381)
... ....+ ...++.++.+||+++.|+++++++|.+.+
T Consensus 150 ~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 221 11111 34567889999999999999999998764
No 167
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.67 E-value=1.1e-17 Score=165.95 Aligned_cols=89 Identities=20% Similarity=0.334 Sum_probs=48.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe---------------------C---CceEEEEEcCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---------------------G---EHEFMLVDTGG 220 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~---------------------~---~~~~~liDTPG 220 (381)
+|+++|.+|||||||+|+|++.. +.++++|++|++...+...+ + ...+.||||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 78999999999999999999987 67888999998877664321 2 24688999999
Q ss_pred CCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCC
Q 016883 221 VLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG 285 (381)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~ 285 (381)
+.........+ ...++.+++.+|++++|+|+.++
T Consensus 81 ~~~~a~~~~~l-------------------------------~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGL-------------------------------GNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---------------------------------------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhH-------------------------------HHHHHHHHhcCCEEEEEEecccc
Confidence 97533211110 11223456889999999999874
No 168
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.67 E-value=4.6e-16 Score=159.73 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=85.9
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCccc---------------cc------CCCCcccccceeeEEeCCceEEEEEcCCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAI---------------VV------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~---------------~~------~~~~tt~~~~~~~~~~~~~~~~liDTPG~~ 222 (381)
.+|+++|++|+|||||+++|+...... +. ...+.|.......+.+.+..+.||||||+.
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE 93 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence 489999999999999999998531100 01 123445555555677788899999999997
Q ss_pred CccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCC
Q 016883 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~ 302 (381)
++.. .+..++..+|++|+|+|+.++...+...++..+...
T Consensus 94 df~~--------------------------------------~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~-- 133 (529)
T 2h5e_A 94 DFSE--------------------------------------DTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR-- 133 (529)
T ss_dssp TCCH--------------------------------------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT--
T ss_pred hHHH--------------------------------------HHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc--
Confidence 6432 455678899999999999998888887777777665
Q ss_pred CCeEEEEEeCccCCCc
Q 016883 303 DKFIILAVNKCESPRK 318 (381)
Q Consensus 303 ~~p~ivV~NK~Dl~~~ 318 (381)
++|+++|+||+|+...
T Consensus 134 ~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 134 DTPILTFMNKLDRDIR 149 (529)
T ss_dssp TCCEEEEEECTTSCCS
T ss_pred CCCEEEEEcCcCCccc
Confidence 8999999999998653
No 169
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.67 E-value=4e-16 Score=146.04 Aligned_cols=124 Identities=14% Similarity=0.171 Sum_probs=94.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
.++|+++|.+|+|||||+|+|++.....++..+++|.......+..++..+.+|||||+.++........
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~---------- 105 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQAL---------- 105 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHH----------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHH----------
Confidence 4599999999999999999999988767788888888887777888888999999999987654332111
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHh--ccccEEEEEEeCCC-CCChhHHHHHHHHHHhCC---CCeEEEEEeCccCC
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQA-GLTAADEEIADWLRKNYM---DKFIILAVNKCESP 316 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~d~ii~VvD~~~-~~~~~~~~~~~~l~~~~~---~~p~ivV~NK~Dl~ 316 (381)
+....++ ..+|+++||++.+. .+...+..++..+.+.+. ..|+++|+||+|+.
T Consensus 106 ---------------------~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 106 ---------------------ELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp ---------------------HHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred ---------------------HHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 1122222 37899999988765 456666778888877532 25999999999986
Q ss_pred C
Q 016883 317 R 317 (381)
Q Consensus 317 ~ 317 (381)
+
T Consensus 165 ~ 165 (262)
T 3def_A 165 P 165 (262)
T ss_dssp C
T ss_pred C
Confidence 4
No 170
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.67 E-value=3.8e-16 Score=150.32 Aligned_cols=156 Identities=13% Similarity=0.132 Sum_probs=103.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (381)
||+++|.+|||||||++++.+..........+.|.......+. ....+.+|||||++++....
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~---------------- 63 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS---------------- 63 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS----------------
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh----------------
Confidence 5789999999999999998866432212222334333333331 23578999999998764200
Q ss_pred CCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHH---HHHHHHhCCCCeEEEEEeCccCCCcccc
Q 016883 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEI---ADWLRKNYMDKFIILAVNKCESPRKGIM 321 (381)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~---~~~l~~~~~~~p~ivV~NK~Dl~~~~~~ 321 (381)
+ ....+++.++++|+|+|+++.+...-.++ +..+.+...+.|+++|+||+|+..++..
T Consensus 64 -----------------l--~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R 124 (331)
T 3r7w_B 64 -----------------Y--DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFK 124 (331)
T ss_dssp -----------------H--HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHH
T ss_pred -----------------h--hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhh
Confidence 0 12356789999999999998733322333 3333334468999999999999875321
Q ss_pred -----hhH-----HHhh-----CCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 322 -----QVS-----EFWS-----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 322 -----~~~-----~~~~-----~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+.. ++.. .+++++++||++ .+|.+.|..+.+.+.+
T Consensus 125 ~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 125 VDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp HHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred hhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 111 1112 356889999998 5899999998876654
No 171
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.67 E-value=1.5e-18 Score=170.80 Aligned_cols=218 Identities=17% Similarity=0.083 Sum_probs=131.9
Q ss_pred CCchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccc-cccccCCCC---CccchhHhhHHHHHHHHHhhhhhh
Q 016883 54 LPLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYED-VDDESDGQD---FGIDVDALEREAKDAVREYSSLLS 129 (381)
Q Consensus 54 ~~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~-~~~~~~~~~---~~i~~sa~~~~~~~~l~~~~~~l~ 129 (381)
...++.+++ +.+|+++|+||+|+.+.+.. .....++ ...++..+. +.+.+|+.++.+...+.+.....
T Consensus 88 ~~~~l~~~l----~~~piilV~NK~DLl~~~~~---~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~- 159 (369)
T 3ec1_A 88 FIPGLPRFA----ADNPILLVGNKADLLPRSVK---YPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRY- 159 (369)
T ss_dssp CCSSHHHHC----TTSCEEEEEECGGGSCTTCC---HHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHH-
T ss_pred hhhHHHHHh----CCCCEEEEEEChhcCCCccC---HHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhh-
Confidence 345566664 47899999999999754321 0011111 122344444 56788998888744333332211
Q ss_pred hhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCC-----CcccccCCCCccccccee
Q 016883 130 RQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGG-----NRAIVVDEPGVTRDRMYG 204 (381)
Q Consensus 130 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~-----~~~~~~~~~~tt~~~~~~ 204 (381)
.+ ..+++++|.+|+|||||+|+|++. ....++..+++|++....
T Consensus 160 ----------------~~---------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~ 208 (369)
T 3ec1_A 160 ----------------RE---------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEI 208 (369)
T ss_dssp ----------------HT---------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEE
T ss_pred ----------------cc---------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEE
Confidence 01 127899999999999999999986 446778889999877654
Q ss_pred eEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHh---ccccEEEEEEe
Q 016883 205 RSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAI---EESCVIIFLVD 281 (381)
Q Consensus 205 ~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~d~ii~VvD 281 (381)
.+ +..+.++||||+.........+.+ .....+ ...|.++|+++
T Consensus 209 ~~---~~~~~liDtPG~~~~~~~~~~l~~-------------------------------~~l~~~~~~~~i~~~~~~l~ 254 (369)
T 3ec1_A 209 PL---ESGATLYDTPGIINHHQMAHFVDA-------------------------------RDLKIITPKREIHPRVYQLN 254 (369)
T ss_dssp EC---STTCEEEECCSCCCCSSGGGGSCT-------------------------------TTHHHHSCSSCCCCEEEEEC
T ss_pred Ee---CCCeEEEeCCCcCcHHHHHHHHhH-------------------------------HHHHHHhcccccCceEEEEc
Confidence 33 334799999999765432221110 111222 67899999999
Q ss_pred CCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch-hHHH--hhCCCceEEEecCCCCCHHH
Q 016883 282 GQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEF--WSLGFSPLPISAISGTGTGE 346 (381)
Q Consensus 282 ~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~-~~~~--~~~~~~~~~vSA~~g~gi~~ 346 (381)
+...........++.+... +.|+++++||+|.......+ ..+. ...+..+.+.++..+.++.+
T Consensus 255 ~~~~~~~g~l~~l~~l~~~--~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~~~~~~~ 320 (369)
T 3ec1_A 255 EGQTLFFGGLARLDYIKGG--RRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRYAAEFPP 320 (369)
T ss_dssp TTEEEEETTTEEEEEEESS--SEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGGTTTCCC
T ss_pred CCceEEECCEEEEEEccCC--CceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchhhhhccC
Confidence 8542111111112223332 78999999999987643322 2222 34556677777776666654
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.67 E-value=2.5e-17 Score=166.43 Aligned_cols=145 Identities=21% Similarity=0.198 Sum_probs=100.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC--cc------------c----------------ccCCCCcccccceeeEEeCCce
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN--RA------------I----------------VVDEPGVTRDRMYGRSFWGEHE 212 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~--~~------------~----------------~~~~~~tt~~~~~~~~~~~~~~ 212 (381)
..+|+++|++|+|||||+|+|++.. .. . .....+.|.+.....+...+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 4589999999999999999998541 00 0 0012456766666666777888
Q ss_pred EEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCCh----
Q 016883 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA---- 288 (381)
Q Consensus 213 ~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~---- 288 (381)
+.||||||+.++. ..+..++..+|++++|+|++++...
T Consensus 87 ~~iiDtPGh~~f~--------------------------------------~~~~~~~~~aD~~ilVvda~~g~~~~sf~ 128 (458)
T 1f60_A 87 VTVIDAPGHRDFI--------------------------------------KNMITGTSQADCAILIIAGGVGEFEAGIS 128 (458)
T ss_dssp EEEEECCCCTTHH--------------------------------------HHHHHSSSCCSEEEEEEECSHHHHHHHTC
T ss_pred EEEEECCCcHHHH--------------------------------------HHHHhhhhhCCEEEEEEeCCcCccccccC
Confidence 9999999986422 2455677899999999999875433
Q ss_pred ---hHHHHHHHHHHhCCCCe-EEEEEeCccCCC--cccch----hHH-H-hhC-----CCceEEEecCCCCCHHHH
Q 016883 289 ---ADEEIADWLRKNYMDKF-IILAVNKCESPR--KGIMQ----VSE-F-WSL-----GFSPLPISAISGTGTGEL 347 (381)
Q Consensus 289 ---~~~~~~~~l~~~~~~~p-~ivV~NK~Dl~~--~~~~~----~~~-~-~~~-----~~~~~~vSA~~g~gi~~l 347 (381)
+..+.+..+... +.| +++|+||+|+.+ ....+ ... + ... +.+++++||++|.|++++
T Consensus 129 ~~~qt~~~~~~~~~~--~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 129 KDGQTREHALLAFTL--GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTSHHHHHHHHHHHT--TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cchhHHHHHHHHHHc--CCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 555555555544 665 899999999974 21111 111 1 112 368999999999999754
No 173
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.66 E-value=2.1e-16 Score=171.92 Aligned_cols=156 Identities=17% Similarity=0.112 Sum_probs=110.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCc--c-------------cccCCCCcccccceeeEEeCCceEEEEEcCCCCCccC
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNR--A-------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~--~-------------~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~ 226 (381)
...+|+++|++|+|||||+++|++... . ......+.|.+.....+...+..+.||||||+.++.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~- 373 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV- 373 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH-
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH-
Confidence 456899999999999999999986410 0 011234556655554555567889999999996531
Q ss_pred CCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe-
Q 016883 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p- 305 (381)
......+..+|++|+|+|++++...+..+++..+... ++|
T Consensus 374 -------------------------------------~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l--gIP~ 414 (1289)
T 3avx_A 374 -------------------------------------KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV--GVPY 414 (1289)
T ss_dssp -------------------------------------HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH--TCSC
T ss_pred -------------------------------------HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc--CCCe
Confidence 2445677899999999999998888888888777766 888
Q ss_pred EEEEEeCccCCCccc-ch-----hHHH-hhC-----CCceEEEecCCC--------CCHHHHHHHHHHHhhh
Q 016883 306 IILAVNKCESPRKGI-MQ-----VSEF-WSL-----GFSPLPISAISG--------TGTGELLDLVCSELKK 357 (381)
Q Consensus 306 ~ivV~NK~Dl~~~~~-~~-----~~~~-~~~-----~~~~~~vSA~~g--------~gi~~l~~~i~~~l~~ 357 (381)
+|+|+||+|+.+... .+ ...+ ... ..+++++||++| .|+++|++.|.+.++.
T Consensus 415 IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 415 IIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp EEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred EEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 789999999986321 11 1111 112 368999999999 4799999999887753
No 174
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.65 E-value=7.3e-16 Score=163.09 Aligned_cols=118 Identities=17% Similarity=0.221 Sum_probs=88.1
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCC--Ccc---------cccC------CCCcccccceeeEEeCCceEEEEEcCCCCC
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGG--NRA---------IVVD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~--~~~---------~~~~------~~~tt~~~~~~~~~~~~~~~~liDTPG~~~ 223 (381)
....+|+++|++|+|||||+|+|+.. ... .+.+ .+++|.......+.+++..+.||||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 34569999999999999999999842 110 0111 245666666666778888999999999976
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+.. .+..++..+|++++|+|+.++...++..++..+.+. +
T Consensus 88 f~~--------------------------------------~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~--~ 127 (693)
T 2xex_A 88 FTV--------------------------------------EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY--G 127 (693)
T ss_dssp CCH--------------------------------------HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT--T
T ss_pred hHH--------------------------------------HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc--C
Confidence 432 345667889999999999999888888888777776 8
Q ss_pred CeEEEEEeCccCCCc
Q 016883 304 KFIILAVNKCESPRK 318 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~~ 318 (381)
+|+++|+||+|+...
T Consensus 128 ~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 128 VPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCEEEEEECTTSTTC
T ss_pred CCEEEEEECCCcccc
Confidence 999999999998754
No 175
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.65 E-value=2.6e-16 Score=142.00 Aligned_cols=142 Identities=21% Similarity=0.165 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhCCCcccc--cCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIV--VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~--~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
...++|+++|++|+|||||+|+|.+...... ...+.++.. +.+..+.+|||||+......
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~Dt~G~~~~~~~----------- 71 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------YDGSGVTLVDFPGHVKLRYK----------- 71 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT-------GGGSSCEEEECCCCGGGTHH-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE-------eeCceEEEEECCCcHHHHHH-----------
Confidence 3467999999999999999999998753221 111211111 14557899999999654320
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCC-C--CCChhHHHHHHHHHH----hCCCCeEEEEEe
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ-A--GLTAADEEIADWLRK----NYMDKFIILAVN 311 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~-~--~~~~~~~~~~~~l~~----~~~~~p~ivV~N 311 (381)
+..........+|++++|+|++ + .+......+...+.. ...+.|+++|+|
T Consensus 72 -----------------------~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 128 (218)
T 1nrj_B 72 -----------------------LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128 (218)
T ss_dssp -----------------------HHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred -----------------------HHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEE
Confidence 1111222234489999999998 3 333333333333332 124899999999
Q ss_pred CccCCCcccchh--------H-HH-hhCCCceEEEecCCCCC
Q 016883 312 KCESPRKGIMQV--------S-EF-WSLGFSPLPISAISGTG 343 (381)
Q Consensus 312 K~Dl~~~~~~~~--------~-~~-~~~~~~~~~vSA~~g~g 343 (381)
|+|+........ . .+ ...+.+++++||++|.+
T Consensus 129 K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 129 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp CTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred chHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 999987543221 1 11 12245789999998865
No 176
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.65 E-value=2.4e-16 Score=159.67 Aligned_cols=146 Identities=17% Similarity=0.209 Sum_probs=90.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC--c----------------------ccc------cCCCCcccccceeeEEeCCce
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN--R----------------------AIV------VDEPGVTRDRMYGRSFWGEHE 212 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~--~----------------------~~~------~~~~~tt~~~~~~~~~~~~~~ 212 (381)
..+|+++|++|+|||||+++|+... . +.+ ....+.|.+.....+..++..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 4589999999999999999997421 0 000 112456666666666777888
Q ss_pred EEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCC-----
Q 016883 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT----- 287 (381)
Q Consensus 213 ~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~----- 287 (381)
+.||||||+.++.. .....+..+|++|+|+|++++..
T Consensus 123 ~~iiDtPGh~~f~~--------------------------------------~~~~~~~~aD~~ilVvDa~~g~~e~sf~ 164 (467)
T 1r5b_A 123 FSLLDAPGHKGYVT--------------------------------------NMINGASQADIGVLVISARRGEFEAGFE 164 (467)
T ss_dssp EEECCCCC-------------------------------------------------TTSCSEEEEEEECSTTHHHHTTS
T ss_pred EEEEECCCcHHHHH--------------------------------------HHHhhcccCCEEEEEEeCCcCccccccC
Confidence 99999999976533 23355688999999999998642
Q ss_pred --hhHHHHHHHHHHhCCCCe-EEEEEeCccCCCcc----cch-----hHHH-hhC-------CCceEEEecCCCCCHHHH
Q 016883 288 --AADEEIADWLRKNYMDKF-IILAVNKCESPRKG----IMQ-----VSEF-WSL-------GFSPLPISAISGTGTGEL 347 (381)
Q Consensus 288 --~~~~~~~~~l~~~~~~~p-~ivV~NK~Dl~~~~----~~~-----~~~~-~~~-------~~~~~~vSA~~g~gi~~l 347 (381)
.+..+.+..+... ++| +++|+||+|+...+ ..+ ...+ ... +.+++++||++|.|++++
T Consensus 165 ~~~qt~e~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 165 RGGQTREHAVLARTQ--GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp TTCCHHHHHHHHHHT--TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred CCCcHHHHHHHHHHc--CCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 3555666555554 787 99999999996421 111 1111 112 357899999999999875
Q ss_pred H
Q 016883 348 L 348 (381)
Q Consensus 348 ~ 348 (381)
+
T Consensus 243 ~ 243 (467)
T 1r5b_A 243 V 243 (467)
T ss_dssp C
T ss_pred c
Confidence 5
No 177
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.64 E-value=1.1e-15 Score=149.25 Aligned_cols=163 Identities=22% Similarity=0.330 Sum_probs=102.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcc-----cccCCCC----------------------cccccc-------------
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-----IVVDEPG----------------------VTRDRM------------- 202 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~-----~~~~~~~----------------------tt~~~~------------- 202 (381)
.++|+++|.+|||||||+|+|++.... .++..|+ +|.+..
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 579999999999999999999997643 2233333 222200
Q ss_pred ----------eeeEEe-CCceEEEEEcCCCCCccCC--CchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHH
Q 016883 203 ----------YGRSFW-GEHEFMLVDTGGVLNVSKS--QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAA 269 (381)
Q Consensus 203 ----------~~~~~~-~~~~~~liDTPG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (381)
...+.. .+..+.||||||+...... ..++.+. +...+..+
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~---------------------------~~~~~~~~ 163 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQ---------------------------IRDMLMQF 163 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHH---------------------------HHHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHH---------------------------HHHHHHHH
Confidence 000111 1457999999999753211 1111111 12234455
Q ss_pred hcc-ccEEEEEEeCCCCCChhHH-HHHHHHHHhCCCCeEEEEEeCccCCCccc--chhHHH--hh--CCC-ceEEEecCC
Q 016883 270 IEE-SCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEF--WS--LGF-SPLPISAIS 340 (381)
Q Consensus 270 l~~-~d~ii~VvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~--~~~~~~--~~--~~~-~~~~vSA~~ 340 (381)
+.. .+++++|+|++.++...+. .+++.+... +.|+++|+||+|+.+... ...... .. .++ +++++||++
T Consensus 164 ~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~--~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~ 241 (353)
T 2x2e_A 164 VTKENCLILAVSPANSDLANSDALKVAKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKD 241 (353)
T ss_dssp HTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTT--CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHH
T ss_pred HcCCCeEEEEEecCCCccchhHHHHHHHHhCcC--CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCccc
Confidence 544 5667777888776666654 355555544 899999999999986533 111111 11 232 578999999
Q ss_pred CCCHHHHHHHHHHH
Q 016883 341 GTGTGELLDLVCSE 354 (381)
Q Consensus 341 g~gi~~l~~~i~~~ 354 (381)
|.|++++++++.+.
T Consensus 242 ~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 242 IDGKKDITAALAAE 255 (353)
T ss_dssp HHTTCCHHHHHHHH
T ss_pred ccccccHHHHHHHH
Confidence 99999999998773
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.64 E-value=5.8e-16 Score=163.78 Aligned_cols=116 Identities=21% Similarity=0.289 Sum_probs=85.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC--c---ccc------cC------CCCcccccceeeEEeCCceEEEEEcCCCCCcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN--R---AIV------VD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~--~---~~~------~~------~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~ 225 (381)
..+|+++|++|+|||||+|+|+... . ..+ .+ ..+.|.......+.+.+..+.||||||+.++.
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 91 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFT 91 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchH
Confidence 4599999999999999999998321 0 000 11 23456666666677788899999999997632
Q ss_pred CCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe
Q 016883 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p 305 (381)
..+..++..+|++++|+|+.++...++..++..+... ++|
T Consensus 92 --------------------------------------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~--~~p 131 (691)
T 1dar_A 92 --------------------------------------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY--KVP 131 (691)
T ss_dssp --------------------------------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCC
T ss_pred --------------------------------------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc--CCC
Confidence 2445677889999999999999988888777777766 899
Q ss_pred EEEEEeCccCCCc
Q 016883 306 IILAVNKCESPRK 318 (381)
Q Consensus 306 ~ivV~NK~Dl~~~ 318 (381)
+++|+||+|+...
T Consensus 132 ~ivviNKiD~~~~ 144 (691)
T 1dar_A 132 RIAFANKMDKTGA 144 (691)
T ss_dssp EEEEEECTTSTTC
T ss_pred EEEEEECCCcccC
Confidence 9999999998753
No 179
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.64 E-value=9.2e-16 Score=158.11 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=90.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC---------------------cccccCCCCcccccceeeEEeCCceEEEEEcCCCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN---------------------RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~---------------------~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~ 223 (381)
+|+++|+.++|||||..+|+... ........|.|.......+.+++..+.|+||||+.+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 89999999999999999986211 001122346777777778899999999999999998
Q ss_pred ccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCC
Q 016883 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (381)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~ 303 (381)
+.. .+...+.-+|.+|+|+|+..+...+...+++.+.+. +
T Consensus 113 F~~--------------------------------------Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~--~ 152 (548)
T 3vqt_A 113 FSE--------------------------------------DTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR--A 152 (548)
T ss_dssp CSH--------------------------------------HHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT--T
T ss_pred HHH--------------------------------------HHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh--C
Confidence 764 566778899999999999999999999999999888 9
Q ss_pred CeEEEEEeCccCCC
Q 016883 304 KFIILAVNKCESPR 317 (381)
Q Consensus 304 ~p~ivV~NK~Dl~~ 317 (381)
+|.++++||+|...
T Consensus 153 lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 153 TPVMTFVNKMDREA 166 (548)
T ss_dssp CCEEEEEECTTSCC
T ss_pred CceEEEEecccchh
Confidence 99999999999864
No 180
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.63 E-value=1.9e-18 Score=169.90 Aligned_cols=212 Identities=15% Similarity=0.098 Sum_probs=119.4
Q ss_pred hhcCCCCceeEcccCCCCCCCCCCCccccccccc-cccccCCCC---CccchhHhhHHHHHHHHHhhhhhhhhhhhhhch
Q 016883 63 RSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYED-VDDESDGQD---FGIDVDALEREAKDAVREYSSLLSRQLIIQDET 138 (381)
Q Consensus 63 ~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~-~~~~~~~~~---~~i~~sa~~~~~~~~l~~~~~~l~~~l~~~~~~ 138 (381)
++..+.+|+++|+||+|+.+.... . ....++ ...+...++ +.+.+||.++.+...+.+.....
T Consensus 91 ~~~~~~~p~ilV~NK~DL~~~~~~-~--~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~---------- 157 (368)
T 3h2y_A 91 HRFVGNNKVLLVGNKADLIPKSVK-H--DKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYY---------- 157 (368)
T ss_dssp HHHSSSSCEEEEEECGGGSCTTSC-H--HHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH----------
T ss_pred HHHhCCCcEEEEEEChhcCCcccC-H--HHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh----------
Confidence 333457899999999999753321 0 011111 112233344 56788888888843333322111
Q ss_pred hhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCC------cccccCCCCcccccceeeEEeCCce
Q 016883 139 DDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN------RAIVVDEPGVTRDRMYGRSFWGEHE 212 (381)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~------~~~~~~~~~tt~~~~~~~~~~~~~~ 212 (381)
.. ..+++++|.+|+|||||+|+|++.. ...++..+++|++.....+ +..
T Consensus 158 -------~~---------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~ 212 (368)
T 3h2y_A 158 -------RG---------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL---DEE 212 (368)
T ss_dssp -------HT---------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES---SSS
T ss_pred -------cc---------------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe---cCC
Confidence 01 1278999999999999999999852 3457888999987766443 223
Q ss_pred EEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHH--HhccccEEEEEEeCCCCCChhH
Q 016883 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATA--AIEESCVIIFLVDGQAGLTAAD 290 (381)
Q Consensus 213 ~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~d~ii~VvD~~~~~~~~~ 290 (381)
+.++||||+.+.....+.+.. ..... .....+.++|++++........
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~------------------------------~~l~~~~~~~~i~~~~~~l~~~~~~~~g~ 262 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGK------------------------------QSLKLITPTKEIKPMVFQLNEEQTLFFSG 262 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCH------------------------------HHHHHHSCSSCCCCEEEEECTTEEEEETT
T ss_pred eEEEeCCCcCcHHHHHHHhhH------------------------------HHHHHhccccccCceEEEEcCCCEEEEcc
Confidence 799999999765332211100 01111 1356889999999854211112
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCccCCCcccch-hHHH--hhCCCceEEEecCCCCCH
Q 016883 291 EEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEF--WSLGFSPLPISAISGTGT 344 (381)
Q Consensus 291 ~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~-~~~~--~~~~~~~~~vSA~~g~gi 344 (381)
...++.+... +.|+++++||+|.......+ ..+. ...+..+.+.++..+.++
T Consensus 263 l~~~d~l~~~--~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~~~~~ 317 (368)
T 3h2y_A 263 LARFDYVSGG--RRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPTPEELENM 317 (368)
T ss_dssp TEEEEEEESS--SEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSSCHHHHHTS
T ss_pred eEEEEEecCC--CceEEEEecCccccccccHHHHHHHHHHHhCCccCCCchhhHhhc
Confidence 1112223333 78999999999987644322 2222 234555555555544443
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.63 E-value=2.8e-15 Score=158.80 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=86.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCC--ccc---c------cC------CCCcccccceeeEEeCC-------ceEEEEE
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGN--RAI---V------VD------EPGVTRDRMYGRSFWGE-------HEFMLVD 217 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~--~~~---~------~~------~~~tt~~~~~~~~~~~~-------~~~~liD 217 (381)
..++|+++|+.|+|||||+++|+... ... + .+ ..+.|.......+.+.+ ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 46699999999999999999997431 000 0 01 23445544445556665 7899999
Q ss_pred cCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHH
Q 016883 218 TGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWL 297 (381)
Q Consensus 218 TPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l 297 (381)
|||+.++.. .+..++..+|++|+|+|++++...+...++..+
T Consensus 89 TPG~~df~~--------------------------------------~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~ 130 (704)
T 2rdo_7 89 TPGHVDFTI--------------------------------------EVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 130 (704)
T ss_pred CCCccchHH--------------------------------------HHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH
Confidence 999976432 344667889999999999998887777777777
Q ss_pred HHhCCCCeEEEEEeCccCCC
Q 016883 298 RKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 298 ~~~~~~~p~ivV~NK~Dl~~ 317 (381)
... ++|+++|+||+|+..
T Consensus 131 ~~~--~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 131 NKY--KVPRIAFVNKMDRMG 148 (704)
T ss_pred HHc--CCCEEEEEeCCCccc
Confidence 665 899999999999865
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.63 E-value=2.4e-15 Score=158.54 Aligned_cols=114 Identities=21% Similarity=0.233 Sum_probs=87.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcc-----cc------cC------CCCcccccceeeEEeCCceEEEEEcCCCCCcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-----IV------VD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~-----~~------~~------~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~ 225 (381)
..+|+++|++|+|||||+++|++.... .+ .+ ..+.|.......+.+.+..+.+|||||+.++.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 348999999999999999999843211 00 00 11334444555566677889999999997532
Q ss_pred CCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe
Q 016883 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p 305 (381)
..+..++..+|++++|+|+.++...+...++..+... ++|
T Consensus 89 --------------------------------------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~--~ip 128 (665)
T 2dy1_A 89 --------------------------------------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL--GLP 128 (665)
T ss_dssp --------------------------------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCC
T ss_pred --------------------------------------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc--cCC
Confidence 2455677889999999999999998888888888776 899
Q ss_pred EEEEEeCccCC
Q 016883 306 IILAVNKCESP 316 (381)
Q Consensus 306 ~ivV~NK~Dl~ 316 (381)
+++|+||+|+.
T Consensus 129 ~ilv~NKiD~~ 139 (665)
T 2dy1_A 129 RMVVVTKLDKG 139 (665)
T ss_dssp EEEEEECGGGC
T ss_pred EEEEecCCchh
Confidence 99999999987
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.62 E-value=3.6e-15 Score=148.58 Aligned_cols=164 Identities=20% Similarity=0.292 Sum_probs=114.8
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC-ceEEEEEcCCCCCccCCCchhhhhhhhhhccC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 242 (381)
..|+++|++|||||||+|+|++.. ..+..++++|.......+..++ ..+.++||||+.+.......
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~------------ 224 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKG------------ 224 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCC------------
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhh------------
Confidence 478999999999999999999875 3667788888877777777765 77999999999753221110
Q ss_pred CCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHh---CCCCeEEEEEeCccCCCc
Q 016883 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN---YMDKFIILAVNKCESPRK 318 (381)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~---~~~~p~ivV~NK~Dl~~~ 318 (381)
+ . ......+..++.+++|+|++ .-...+ ..+.+.+... +...|.++|+||+|+...
T Consensus 225 ---L------------~----~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 225 ---L------------G----LEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp ---S------------C----HHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred ---h------------h----HHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 0 0 12234467899999999997 211111 1222222221 237899999999999765
Q ss_pred ccchhHH-H-hhCCCceEEEecCCCCCHHHHHHHHHHHhhhccc
Q 016883 319 GIMQVSE-F-WSLGFSPLPISAISGTGTGELLDLVCSELKKVEV 360 (381)
Q Consensus 319 ~~~~~~~-~-~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~~ 360 (381)
....... . ...+.+++.+||++++|+++|+++|.+.+.+...
T Consensus 285 ~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 285 EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 2222221 1 2346789999999999999999999999876553
No 184
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.62 E-value=8.7e-16 Score=149.93 Aligned_cols=149 Identities=21% Similarity=0.236 Sum_probs=89.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC------CcccccCCC-------------------------------------Cccc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG------NRAIVVDEP-------------------------------------GVTR 199 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~------~~~~~~~~~-------------------------------------~tt~ 199 (381)
.+.|+++|++|||||||+|+|++. .....+..+ ++|+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 568999999999999999999852 111111111 1222
Q ss_pred ccceee--EEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEE
Q 016883 200 DRMYGR--SFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVII 277 (381)
Q Consensus 200 ~~~~~~--~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii 277 (381)
+..... +...+..+.++||||+... . ......+|+++
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~----~-------------------------------------~~l~~~~d~vl 192 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQS----E-------------------------------------FAVADMVDMFV 192 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--C----H-------------------------------------HHHHTTCSEEE
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchh----h-------------------------------------hhHHhhCCEEE
Confidence 111110 1235677899999998521 0 02246899999
Q ss_pred EEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch--hHHH----h-------hCCCceEEEecCCCCCH
Q 016883 278 FLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ--VSEF----W-------SLGFSPLPISAISGTGT 344 (381)
Q Consensus 278 ~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~--~~~~----~-------~~~~~~~~vSA~~g~gi 344 (381)
+|+|+..+...+. + .......|.++|+||+|+.+..... ...+ . ....+++++||++|+|+
T Consensus 193 ~V~d~~~~~~~~~--i----~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi 266 (349)
T 2www_A 193 LLLPPAGGDELQG--I----KRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGI 266 (349)
T ss_dssp EEECCC------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTH
T ss_pred EEEcCCcchhHHH--h----HHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCH
Confidence 9999986532111 1 1112267889999999987532110 1111 0 01346899999999999
Q ss_pred HHHHHHHHHHhhhc
Q 016883 345 GELLDLVCSELKKV 358 (381)
Q Consensus 345 ~~l~~~i~~~l~~~ 358 (381)
++|+++|.+.+...
T Consensus 267 ~~L~~~I~~~~~~~ 280 (349)
T 2www_A 267 SEMWDKMKDFQDLM 280 (349)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 185
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.62 E-value=6.8e-16 Score=150.94 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=58.3
Q ss_pred HhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh----HH-H---h-----hCCCceEE
Q 016883 269 AIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV----SE-F---W-----SLGFSPLP 335 (381)
Q Consensus 269 ~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~----~~-~---~-----~~~~~~~~ 335 (381)
.+..+|++++|+|+..+...+. ++....+.|+++|+||+|+.+...... .. . . ..+.++++
T Consensus 189 ~~~~aD~vl~V~d~~~~~~~~~------l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~ 262 (355)
T 3p32_A 189 VANMVDTFVLLTLARTGDQLQG------IKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLT 262 (355)
T ss_dssp HHTTCSEEEEEEESSTTCTTTT------CCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEE
T ss_pred HHHhCCEEEEEECCCCCccHHH------HHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEE
Confidence 3478999999999875432211 112223579999999999875422111 11 0 1 11468999
Q ss_pred EecCCCCCHHHHHHHHHHHhhhcc
Q 016883 336 ISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 336 vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+||++|+|+++|+++|.+.+....
T Consensus 263 iSA~~g~Gi~~L~~~i~~~~~~~~ 286 (355)
T 3p32_A 263 MSAVEGRGLAELWDTVERHRQVLT 286 (355)
T ss_dssp EBGGGTBSHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999887643
No 186
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.62 E-value=7.9e-16 Score=150.90 Aligned_cols=166 Identities=15% Similarity=0.080 Sum_probs=82.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCC------Ccccccce--eeEEeCCc--eEEEEEcCCCCCccCCCchhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP------GVTRDRMY--GRSFWGEH--EFMLVDTGGVLNVSKSQPNIM 232 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~------~tt~~~~~--~~~~~~~~--~~~liDTPG~~~~~~~~~~~~ 232 (381)
.++|+++|++|+|||||+|+|++......+..+ ..|..... ..+...+. .+.+|||||+.+......
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e--- 113 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD--- 113 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC---------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH---
Confidence 358899999999999999999876432221111 12222211 12222333 578999999965422100
Q ss_pred hhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhc-------------cccEEEEEEeC-CCCCChhHHHHHHHHH
Q 016883 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIE-------------ESCVIIFLVDG-QAGLTAADEEIADWLR 298 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------------~~d~ii~VvD~-~~~~~~~~~~~~~~l~ 298 (381)
....+..++..+...++. .+|+++|+++. .+++...+.+++..+.
T Consensus 114 ---------------------~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~ 172 (361)
T 2qag_A 114 ---------------------CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH 172 (361)
T ss_dssp -----------------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc
Confidence 011222233333333332 24678888886 5677777776666653
Q ss_pred HhCCCCeEEEEEeCccCCCcccchh----H-H-HhhCCCceEEEecCCCCCHHHHHHHHHHHhh
Q 016883 299 KNYMDKFIILAVNKCESPRKGIMQV----S-E-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 299 ~~~~~~p~ivV~NK~Dl~~~~~~~~----~-~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~ 356 (381)
.++|+|+|+||+|+........ . . ....+++++++||++|.| ++.+.++.+.+.
T Consensus 173 ---~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 173 ---NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp ---S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred ---cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 3799999999999987543322 1 1 123477999999999998 666666555443
No 187
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.60 E-value=8e-15 Score=155.11 Aligned_cols=161 Identities=21% Similarity=0.281 Sum_probs=106.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCccccc-----------------------------------------
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDR----------------------------------------- 201 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~----------------------------------------- 201 (381)
.++|+++|.+++|||||+|+|++......+..+ +|+..
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 679999999999999999999997642222111 12110
Q ss_pred ----------ceeeEEe-CCceEEEEEcCCCCCccC--CCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHH
Q 016883 202 ----------MYGRSFW-GEHEFMLVDTGGVLNVSK--SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATA 268 (381)
Q Consensus 202 ----------~~~~~~~-~~~~~~liDTPG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (381)
....+.. ....+.|+||||+..... ...++.+. + ......
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~-----------------------i----~~lv~~ 182 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQ-----------------------I----RDMLMQ 182 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHH-----------------------H----HHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHH-----------------------H----HHHHHH
Confidence 0011111 233588999999976321 11211111 1 123333
Q ss_pred Hh-ccccEEEEEEeCCCCCChhHH-HHHHHHHHhCCCCeEEEEEeCccCCCcccchh-HHH---hh--CCC-ceEEEecC
Q 016883 269 AI-EESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIMQV-SEF---WS--LGF-SPLPISAI 339 (381)
Q Consensus 269 ~l-~~~d~ii~VvD~~~~~~~~~~-~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~-~~~---~~--~~~-~~~~vSA~ 339 (381)
++ ..+|++++|+|++.++...+. .++..+... +.|+++|+||+|+.++..... ... .. .++ +++++||+
T Consensus 183 yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~--g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~ 260 (772)
T 3zvr_A 183 FVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQK 260 (772)
T ss_dssp HHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTT--CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCE
T ss_pred HHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhc--CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEeccc
Confidence 43 579999999999998888776 677777765 899999999999987543221 111 11 132 67899999
Q ss_pred CCCCHHHHHHHHHH
Q 016883 340 SGTGTGELLDLVCS 353 (381)
Q Consensus 340 ~g~gi~~l~~~i~~ 353 (381)
+|.|+++|++.+.+
T Consensus 261 ~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 261 DIDGKKDITAALAA 274 (772)
T ss_dssp ESSSSEEHHHHHHH
T ss_pred ccccchhHHHHHHH
Confidence 99999999999987
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.59 E-value=6.8e-15 Score=143.97 Aligned_cols=162 Identities=20% Similarity=0.220 Sum_probs=98.8
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCccccc----------------------------------------
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDR---------------------------------------- 201 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~---------------------------------------- 201 (381)
..++|+++|.+|+|||||+|+|++......+... +|+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 3569999999999999999999997532111111 11000
Q ss_pred --------------ceeeE-EeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHH
Q 016883 202 --------------MYGRS-FWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQA 266 (381)
Q Consensus 202 --------------~~~~~-~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (381)
....+ ......+.+|||||+......... ......+...+
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~-------------------------~~~~~~~~~~~ 166 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQS-------------------------DSIVKDIENMV 166 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCC-------------------------SSHHHHHHHHH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCc-------------------------hhHHHHHHHHH
Confidence 00000 112346899999999875321110 00111234567
Q ss_pred HHHhccccEEEEEEeCCCC-CChh-HHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh--HH--HhhCCCceEEEecCC
Q 016883 267 TAAIEESCVIIFLVDGQAG-LTAA-DEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV--SE--FWSLGFSPLPISAIS 340 (381)
Q Consensus 267 ~~~l~~~d~ii~VvD~~~~-~~~~-~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~--~~--~~~~~~~~~~vSA~~ 340 (381)
..++..+|++++|+|+... .... ...++..+... +.|+++|+||+|+.+...... .. ....+.+++++|+++
T Consensus 167 ~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s 244 (360)
T 3t34_A 167 RSYIEKPNCIILAISPANQDLATSDAIKISREVDPS--GDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRS 244 (360)
T ss_dssp HHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTT--CTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCC
T ss_pred HHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhccc--CCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECC
Confidence 7788999999999987542 2222 13333433333 789999999999986543221 11 123567899999999
Q ss_pred CCCHHHHHHHH
Q 016883 341 GTGTGELLDLV 351 (381)
Q Consensus 341 g~gi~~l~~~i 351 (381)
+.|+++.+.++
T Consensus 245 ~~~i~~~~~~~ 255 (360)
T 3t34_A 245 QADINKNVDMI 255 (360)
T ss_dssp HHHHHTTCCHH
T ss_pred hHHhccCCCHH
Confidence 99988765543
No 189
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.56 E-value=3.2e-15 Score=156.79 Aligned_cols=156 Identities=20% Similarity=0.257 Sum_probs=119.0
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCC-----cccc------cCC------CCcccccceeeEEeCCceEEEEEcCCCCCccC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGN-----RAIV------VDE------PGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~-----~~~~------~~~------~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~ 226 (381)
.+|+++|+.++|||||..+|+... ...+ .++ .|.|.......+.+++..++|+||||+.++..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 478999999999999999986321 0111 111 14566666667788899999999999998653
Q ss_pred CCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeE
Q 016883 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI 306 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ 306 (381)
.+...+..+|++|+|+|+..+...++..+++.+.+. ++|.
T Consensus 83 --------------------------------------Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~--~lp~ 122 (638)
T 3j25_A 83 --------------------------------------EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM--GIPT 122 (638)
T ss_dssp --------------------------------------HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH--TCSC
T ss_pred --------------------------------------HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCe
Confidence 566778899999999999999999999999999988 9999
Q ss_pred EEEEeCccCCCcccchhH---------------------------------------------H----------------
Q 016883 307 ILAVNKCESPRKGIMQVS---------------------------------------------E---------------- 325 (381)
Q Consensus 307 ivV~NK~Dl~~~~~~~~~---------------------------------------------~---------------- 325 (381)
++++||+|....+..... .
T Consensus 123 i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~ 202 (638)
T 3j25_A 123 IFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQE 202 (638)
T ss_dssp EECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHH
T ss_pred EEEEeccccccCCHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHH
Confidence 999999997643211000 0
Q ss_pred ----Hh-hCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 326 ----FW-SLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 326 ----~~-~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.. ..-.|++..||+++.|++.|++.+.+.++...
T Consensus 203 ~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~ 241 (638)
T 3j25_A 203 ESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSST 241 (638)
T ss_dssp HHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSG
T ss_pred HhhhhcccccccccccccccCCCchhHhhhhhccccCcc
Confidence 00 01247889999999999999999999877543
No 190
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-14 Score=127.98 Aligned_cols=117 Identities=21% Similarity=0.176 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCCCccc--ccCCCCcccccceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~~~~~--~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~ 239 (381)
..++|+++|.+|||||||+|+|.+..... .+..+.++. .+.+..+.+|||||+........
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~~~~---------- 109 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLRYKLS---------- 109 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCCHH----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------eecCCeEEEEECCCCchHHHHHH----------
Confidence 46799999999999999999999875321 111222221 11456788999999976543221
Q ss_pred ccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCC-CCCChhH-HHHHHHHHH-----hCCCCeEEEEEeC
Q 016883 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ-AGLTAAD-EEIADWLRK-----NYMDKFIILAVNK 312 (381)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~-~~~~~~~-~~~~~~l~~-----~~~~~p~ivV~NK 312 (381)
......+..+|++++|+|++ +..+... ..++..+.. ...+.|+++|+||
T Consensus 110 ------------------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 165 (193)
T 2ged_A 110 ------------------------DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 165 (193)
T ss_dssp ------------------------HHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEC
T ss_pred ------------------------HHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEc
Confidence 12233445699999999998 3222111 123322222 1147999999999
Q ss_pred ccCCCcc
Q 016883 313 CESPRKG 319 (381)
Q Consensus 313 ~Dl~~~~ 319 (381)
+|+.+..
T Consensus 166 ~Dl~~~~ 172 (193)
T 2ged_A 166 SELFTAR 172 (193)
T ss_dssp TTSTTCC
T ss_pred hHhcCCC
Confidence 9997653
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.52 E-value=6.6e-14 Score=136.81 Aligned_cols=89 Identities=28% Similarity=0.294 Sum_probs=64.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC-----------------ceEEEEEcCCCCCccC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-----------------HEFMLVDTGGVLNVSK 226 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~~~liDTPG~~~~~~ 226 (381)
.+|+++|.+|||||||+|+|++.. +.++++|++|.....+.+.+++ ..+.+|||||+..+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 489999999999999999999876 5788899999888777776665 4689999999976432
Q ss_pred CCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC
Q 016883 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (381)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~ 284 (381)
... .+ ...++.+++.+|++++|+|+.+
T Consensus 82 ~~~----gl---------------------------~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGE----GL---------------------------GNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHG----GG---------------------------TCCHHHHHHTCSEEEEEEECSC
T ss_pred ccc----hH---------------------------HHHHHHHHHhcCeEEEEEecCC
Confidence 111 01 0134456789999999999975
No 192
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.52 E-value=5e-15 Score=140.41 Aligned_cols=140 Identities=23% Similarity=0.237 Sum_probs=80.0
Q ss_pred CchHHHHhhhcCCCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhhhhhhhhh
Q 016883 55 PLPLTRHLRSLSPSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSLLSRQLII 134 (381)
Q Consensus 55 ~~~l~~~l~~~~~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~~ 134 (381)
..++.+|+ +.+|.++|+||+|+.+.. ..+.+.+.|+..+.+.+.+|+.++.+...+.+. +.+.+..
T Consensus 41 ~~~l~~~l----~~kp~ilVlNK~DL~~~~-------~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~---i~~~l~~ 106 (282)
T 1puj_A 41 NPMIEDIL----KNKPRIMLLNKADKADAA-------VTQQWKEHFENQGIRSLSINSVNGQGLNQIVPA---SKEILQE 106 (282)
T ss_dssp CHHHHHHC----SSSCEEEEEECGGGSCHH-------HHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHH---HHHHHHH
T ss_pred CHHHHHHH----CCCCEEEEEECcccCCHH-------HHHHHHHHHHhcCCcEEEEECCCcccHHHHHHH---HHHHHHH
Confidence 35777777 579999999999997421 112222444445567778888777663333222 2111110
Q ss_pred hhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEE
Q 016883 135 QDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFM 214 (381)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~ 214 (381)
. .... ..++ ......+++++|.||||||||+|+|.+...+.++..+++|++.+...+ +..+.
T Consensus 107 ~---~~~~--~~~~----------~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~ 168 (282)
T 1puj_A 107 K---FDRM--RAKG----------VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELE 168 (282)
T ss_dssp H---HHHH--HHTT----------CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE---TTTEE
T ss_pred H---HHHH--HhcC----------CCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe---CCCEE
Confidence 0 0000 0000 112356899999999999999999999887889999999988865333 55789
Q ss_pred EEEcCCCCCccC
Q 016883 215 LVDTGGVLNVSK 226 (381)
Q Consensus 215 liDTPG~~~~~~ 226 (381)
++||||+.....
T Consensus 169 l~DtpG~~~~~~ 180 (282)
T 1puj_A 169 LLDTPGILWPKF 180 (282)
T ss_dssp EEECCCCCCSCC
T ss_pred EEECcCcCCCCC
Confidence 999999976543
No 193
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.51 E-value=1.9e-14 Score=139.99 Aligned_cols=149 Identities=16% Similarity=0.131 Sum_probs=90.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC------CCcccccCCCCcccc-----------------cc-ee--------------
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG------GNRAIVVDEPGVTRD-----------------RM-YG-------------- 204 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~------~~~~~~~~~~~tt~~-----------------~~-~~-------------- 204 (381)
...++++|++|+|||||+|.|.+ .....+...++++.. .. ..
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~~ 135 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQ 135 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhHH
Confidence 45899999999999999999963 222223322222210 00 00
Q ss_pred -------eEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEE
Q 016883 205 -------RSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVII 277 (381)
Q Consensus 205 -------~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii 277 (381)
.+...+..+.|+||||+.+.. ......+|+++
T Consensus 136 ~~~~~~~~~~~~~~~i~liDTpG~~~~~-----------------------------------------~~~~~~aD~vl 174 (341)
T 2p67_A 136 RARELMLLCEAAGYDVVIVETVGVGQSE-----------------------------------------TEVARMVDCFI 174 (341)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEECCTTHH-----------------------------------------HHHHTTCSEEE
T ss_pred HHHHHHHHhhccCCCEEEEeCCCccchH-----------------------------------------HHHHHhCCEEE
Confidence 011346789999999986411 01247899999
Q ss_pred EEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccch----hHH----HhhC-----CCceEEEecCCCCCH
Q 016883 278 FLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ----VSE----FWSL-----GFSPLPISAISGTGT 344 (381)
Q Consensus 278 ~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~----~~~----~~~~-----~~~~~~vSA~~g~gi 344 (381)
+|+|+..+..... +.. ... +.|.++|+||+|+.+..... ... .... ..+++++||++|+|+
T Consensus 175 ~Vvd~~~~~~~~~---l~~-~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi 248 (341)
T 2p67_A 175 SLQIAGGGDDLQG---IKK-GLM--EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGI 248 (341)
T ss_dssp EEECC------CC---CCH-HHH--HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSH
T ss_pred EEEeCCccHHHHH---HHH-hhh--cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCH
Confidence 9999875422111 110 011 56889999999997642211 111 0011 346799999999999
Q ss_pred HHHHHHHHHHhhhc
Q 016883 345 GELLDLVCSELKKV 358 (381)
Q Consensus 345 ~~l~~~i~~~l~~~ 358 (381)
++|+++|.+.+..+
T Consensus 249 ~~L~~~l~~~~~~~ 262 (341)
T 2p67_A 249 DEIWHAIIDFKTAL 262 (341)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987644
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.51 E-value=5.9e-14 Score=130.33 Aligned_cols=163 Identities=17% Similarity=0.092 Sum_probs=99.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHh-----CCCcccccCCCCcc----------------cccceeeE--------------
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLV-----GGNRAIVVDEPGVT----------------RDRMYGRS-------------- 206 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~-----~~~~~~~~~~~~tt----------------~~~~~~~~-------------- 206 (381)
....++++|.+||||||+++.|. +.....+...++.+ ........
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 45688899999999999999998 65544444333211 00000000
Q ss_pred -----------E-eCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhcccc
Q 016883 207 -----------F-WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESC 274 (381)
Q Consensus 207 -----------~-~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 274 (381)
. ..+..+.||||||..+..... .+.......+.. +
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~--------------------------------~l~~~~~~~~~~-~ 139 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLFH--------------------------------EFGVRLMENLPY-P 139 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHS--------------------------------HHHHHHHHTSSS-C
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhh--------------------------------hhHHHHHHHHhh-c
Confidence 0 012368999999986421100 001123344566 8
Q ss_pred EEEEEEeCCCCCChhHHH-HH----HHHHHhCCCCeEEEEEeCccCCCcccchh-H------------------------
Q 016883 275 VIIFLVDGQAGLTAADEE-IA----DWLRKNYMDKFIILAVNKCESPRKGIMQV-S------------------------ 324 (381)
Q Consensus 275 ~ii~VvD~~~~~~~~~~~-~~----~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~-~------------------------ 324 (381)
++++|+|+.......+.. .. ...... +.|+++|+||+|+......+. .
T Consensus 140 ~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 217 (262)
T 1yrb_A 140 LVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMA 217 (262)
T ss_dssp EEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHH
T ss_pred eEEeccchhhhcCHHHHHHHHHHHHHHhccc--CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhH
Confidence 999999987655544422 11 112222 789999999999976432110 0
Q ss_pred -------HHhhCCCceEEEecCCCCCHHHHHHHHHHHhhhcc
Q 016883 325 -------EFWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 325 -------~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~~~ 359 (381)
.......+++++||++|+|+++|+++|.+.++...
T Consensus 218 ~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~ 259 (262)
T 1yrb_A 218 YKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCG 259 (262)
T ss_dssp HHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcccc
Confidence 00112348999999999999999999999886543
No 195
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.49 E-value=1.1e-13 Score=142.60 Aligned_cols=131 Identities=19% Similarity=0.175 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCCCChhHHHHHHhCCCcc--cccCCCCccccccee---------------------------------
Q 016883 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYG--------------------------------- 204 (381)
Q Consensus 160 ~~~~~~v~l~G~~gvGKSSLin~L~~~~~~--~~~~~~~tt~~~~~~--------------------------------- 204 (381)
....++|+++|.+|+|||||+|+|++.... .++..+.|++.....
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 345789999999999999999999998754 356666554321100
Q ss_pred ---eEEeCC---ceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEE
Q 016883 205 ---RSFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIF 278 (381)
Q Consensus 205 ---~~~~~~---~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~ 278 (381)
.+.+.+ ..+.||||||+.+......+ +.+ .+...+..++..+|++++
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~--~~~-------------------------~f~~~~~~~l~~aD~il~ 194 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVS--RGY-------------------------DFPAVLRWFAERVDLIIL 194 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC---------CCS-------------------------CHHHHHHHHHHHCSEEEE
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHH--HHh-------------------------hHHHHHHHHHHhCCEEEE
Confidence 000011 35889999999753221100 000 012345567789999999
Q ss_pred EEeCCC-CCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcc
Q 016883 279 LVDGQA-GLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (381)
Q Consensus 279 VvD~~~-~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~ 319 (381)
|+|+++ +....+..++..+... +.|+++|+||+|+....
T Consensus 195 VvDa~~~~~~~~~~~~l~~l~~~--~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 195 LFDAHKLEISDEFSEAIGALRGH--EDKIRVVLNKADMVETQ 234 (550)
T ss_dssp EEETTSCCCCHHHHHHHHHTTTC--GGGEEEEEECGGGSCHH
T ss_pred EEeCCcCCCCHHHHHHHHHHHhc--CCCEEEEEECCCccCHH
Confidence 999987 4677777777777654 78999999999998754
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.49 E-value=1.3e-14 Score=131.12 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=54.1
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcc---cchhHHH---hhCCCceEEEecCCCCCHH
Q 016883 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG---IMQVSEF---WSLGFSPLPISAISGTGTG 345 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~---~~~~~~~---~~~~~~~~~vSA~~g~gi~ 345 (381)
..+.+++|+|+..+..... ...... +.|+++|+||+|+.+.. ..+.... ...+.+++++||++|.|++
T Consensus 129 ~~~~~i~vvd~~~~~~~~~----~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~ 202 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDDVVE----KHPEIF--RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFE 202 (221)
T ss_dssp SCSEEEEEEEGGGCTTHHH----HCHHHH--HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHH
T ss_pred ccCcEEEEEeCCCcchhhh----hhhhhh--hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHH
Confidence 4578999999886532211 112222 68999999999986431 1111111 1234689999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 016883 346 ELLDLVCSELKKVE 359 (381)
Q Consensus 346 ~l~~~i~~~l~~~~ 359 (381)
+++++|.+.+..+.
T Consensus 203 ~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 203 EWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876554
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.47 E-value=3.1e-13 Score=132.52 Aligned_cols=89 Identities=31% Similarity=0.377 Sum_probs=67.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeC---------------------CceEEEEEcCCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---------------------EHEFMLVDTGGVL 222 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~---------------------~~~~~liDTPG~~ 222 (381)
.+|+++|.||||||||+|+|++.. +.+.+++++|.....+...+. +..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 478999999999999999999875 467788888887766655432 3468999999998
Q ss_pred CccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC
Q 016883 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (381)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~ 284 (381)
.+......+ ...++.+++.+|++++|+|+.+
T Consensus 81 ~~a~~~~~l-------------------------------g~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGL-------------------------------GNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCT-------------------------------THHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchH-------------------------------HHHHHHHHHhCCEEEEEEECCC
Confidence 754432211 1245567889999999999975
No 198
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.47 E-value=2.3e-13 Score=144.40 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=86.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC-----ccc------------ccCCCCcccccceeeEEeC-------CceEEEEEc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN-----RAI------------VVDEPGVTRDRMYGRSFWG-------EHEFMLVDT 218 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~-----~~~------------~~~~~~tt~~~~~~~~~~~-------~~~~~liDT 218 (381)
..+|+++|+.++|||||..+|+... ... .....+.|.......+.+. +..+.|+||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 4589999999999999999987321 000 1112355555555555554 457899999
Q ss_pred CCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHH
Q 016883 219 GGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR 298 (381)
Q Consensus 219 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~ 298 (381)
||+.++.. .+...+.-+|++|+|+|+..+...++..+++.+.
T Consensus 93 PGHvDF~~--------------------------------------Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~ 134 (709)
T 4fn5_A 93 PGHVDFTI--------------------------------------EVERSLRVLDGAVVVFCGTSGVEPQSETVWRQAN 134 (709)
T ss_dssp CSCTTCHH--------------------------------------HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH
T ss_pred CCCcccHH--------------------------------------HHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHH
Confidence 99998754 5567788999999999999999999999999998
Q ss_pred HhCCCCeEEEEEeCccCCC
Q 016883 299 KNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 299 ~~~~~~p~ivV~NK~Dl~~ 317 (381)
+. +.|.++++||+|...
T Consensus 135 ~~--~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 135 KY--GVPRIVYVNKMDRQG 151 (709)
T ss_dssp HH--TCCEEEEEECSSSTT
T ss_pred Hc--CCCeEEEEccccccC
Confidence 88 999999999999853
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.44 E-value=9.3e-14 Score=149.90 Aligned_cols=113 Identities=20% Similarity=0.253 Sum_probs=82.7
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCccccc---------------CCCCcccccceeeEEeC----------------Cce
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWG----------------EHE 212 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~---------------~~~~tt~~~~~~~~~~~----------------~~~ 212 (381)
.+|+++|++|+|||||+|+|+........ ...+.|.......+.+. +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 48999999999999999999864211111 11233443333333333 457
Q ss_pred EEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHH
Q 016883 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE 292 (381)
Q Consensus 213 ~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~ 292 (381)
+.||||||+.++.. .+..++..+|++|+|+|+.++.+.++..
T Consensus 100 i~liDTPG~~df~~--------------------------------------~~~~~l~~aD~ailVvDa~~g~~~qt~~ 141 (842)
T 1n0u_A 100 INLIDSPGHVDFSS--------------------------------------EVTAALRVTDGALVVVDTIEGVCVQTET 141 (842)
T ss_dssp EEEECCCCCCSSCH--------------------------------------HHHHHHHTCSEEEEEEETTTBSCHHHHH
T ss_pred EEEEECcCchhhHH--------------------------------------HHHHHHHhCCEEEEEEeCCCCCCHHHHH
Confidence 89999999987543 4456778999999999999998888877
Q ss_pred HHHHHHHhCCCCeEEEEEeCccCC
Q 016883 293 IADWLRKNYMDKFIILAVNKCESP 316 (381)
Q Consensus 293 ~~~~l~~~~~~~p~ivV~NK~Dl~ 316 (381)
++..+... ++|+++|+||+|+.
T Consensus 142 ~~~~~~~~--~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 142 VLRQALGE--RIKPVVVINKVDRA 163 (842)
T ss_dssp HHHHHHHT--TCEEEEEEECHHHH
T ss_pred HHHHHHHc--CCCeEEEEECCCcc
Confidence 66666655 89999999999986
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.44 E-value=3.4e-13 Score=134.36 Aligned_cols=167 Identities=17% Similarity=0.155 Sum_probs=82.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCC------Ccccccceee--EEeCC--ceEEEEEcCCCCCccCCCchhh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP------GVTRDRMYGR--SFWGE--HEFMLVDTGGVLNVSKSQPNIM 232 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~------~tt~~~~~~~--~~~~~--~~~~liDTPG~~~~~~~~~~~~ 232 (381)
.++|+++|++|+|||||+|+|++......+ .. ..|....... +...+ ..+.+|||||+...... ....
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-~~~~ 108 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-SNCW 108 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-----CCEEEEEECC------CEEEEEEECC------------C
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc-hhhH
Confidence 568899999999999999999987542121 11 0111111111 11112 25789999999754210 0000
Q ss_pred hhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHH-----------h--ccccEEEEEEeCC-CCCChhHHHHHHHHH
Q 016883 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAA-----------I--EESCVIIFLVDGQ-AGLTAADEEIADWLR 298 (381)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------l--~~~d~ii~VvD~~-~~~~~~~~~~~~~l~ 298 (381)
. .+..++......+ + ..+|+++|+++++ +++...+..++..+.
T Consensus 109 ~-----------------------~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~ 165 (418)
T 2qag_C 109 Q-----------------------PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH 165 (418)
T ss_dssp H-----------------------HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT
T ss_pred H-----------------------HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh
Confidence 0 0111111121112 2 2356788887776 688888877877775
Q ss_pred HhCCCCeEEEEEeCccCCCcccchhH------HHhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 299 KNYMDKFIILAVNKCESPRKGIMQVS------EFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 299 ~~~~~~p~ivV~NK~Dl~~~~~~~~~------~~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
. ++|+|+|+||+|+......... .....+++++.+||+++.++++++..+.+.++-
T Consensus 166 ~---~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 166 E---KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 227 (418)
T ss_dssp T---TSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CCE
T ss_pred c---cCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence 3 8999999999999875433221 112347889999999999999988888876653
No 201
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.43 E-value=8.9e-14 Score=135.02 Aligned_cols=149 Identities=23% Similarity=0.232 Sum_probs=89.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC------CCcccccCCCCccc-------------------------------------
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG------GNRAIVVDEPGVTR------------------------------------- 199 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~------~~~~~~~~~~~tt~------------------------------------- 199 (381)
...++++|++|+|||||+|.|.+ ......+..+.++.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr 134 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAA 134 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHH
Confidence 34899999999999999999973 33322222221111
Q ss_pred cccee--eEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEE
Q 016883 200 DRMYG--RSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVII 277 (381)
Q Consensus 200 ~~~~~--~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii 277 (381)
+.... .+...+..+.|+||||+.... . .....+|+++
T Consensus 135 ~~~e~~~~~~~~~~~~iliDT~Gi~~~~---------------------------------------~--~v~~~~d~vl 173 (337)
T 2qm8_A 135 KTRETMLLCEAAGFDVILVETVGVGQSE---------------------------------------T--AVADLTDFFL 173 (337)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSSCH---------------------------------------H--HHHTTSSEEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCcch---------------------------------------h--hHHhhCCEEE
Confidence 00000 012257789999999986410 0 1236899999
Q ss_pred EEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCccc-----chhHHH-h---h-----CCCceEEEecCCCCC
Q 016883 278 FLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-----MQVSEF-W---S-----LGFSPLPISAISGTG 343 (381)
Q Consensus 278 ~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~-----~~~~~~-~---~-----~~~~~~~vSA~~g~g 343 (381)
+|+|+..+.. .+ .++......+.++|+||+|+..... .+.... . . ...+++.+||++|.|
T Consensus 174 ~v~d~~~~~~---~~---~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~g 247 (337)
T 2qm8_A 174 VLMLPGAGDE---LQ---GIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKG 247 (337)
T ss_dssp EEECSCC------------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBS
T ss_pred EEEcCCCccc---HH---HHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCC
Confidence 9999864321 11 0111001346688889999764221 111111 1 1 134789999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 016883 344 TGELLDLVCSELKKV 358 (381)
Q Consensus 344 i~~l~~~i~~~l~~~ 358 (381)
+++|++.|.+.....
T Consensus 248 i~~L~~~I~~~~~~~ 262 (337)
T 2qm8_A 248 LDSLWSRIEDHRSKL 262 (337)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987643
No 202
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.41 E-value=5.4e-13 Score=127.52 Aligned_cols=168 Identities=14% Similarity=0.073 Sum_probs=82.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCC------CcccccceeeEEe--C--CceEEEEEcCCCCCccC---CCc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP------GVTRDRMYGRSFW--G--EHEFMLVDTGGVLNVSK---SQP 229 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~------~tt~~~~~~~~~~--~--~~~~~liDTPG~~~~~~---~~~ 229 (381)
.++|+++|++|+|||||+|+|.+......+..+ ..|.......+.. . ...+.+|||||+..... ...
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 468999999999999999999875221111111 0111111111111 1 23578999999954211 001
Q ss_pred hhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHH---------hccccEEEEEEeCCC-CCChhHHHHHHHHHH
Q 016883 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAA---------IEESCVIIFLVDGQA-GLTAADEEIADWLRK 299 (381)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~~d~ii~VvD~~~-~~~~~~~~~~~~l~~ 299 (381)
.+.. .+........... ...+++++|++++.. ++...+.++++.+.
T Consensus 98 ~l~~-----------------------~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~- 153 (301)
T 2qnr_A 98 TIIS-----------------------YIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH- 153 (301)
T ss_dssp THHH-----------------------HHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-
T ss_pred HHHH-----------------------HHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-
Confidence 0110 0000011111111 123456777777654 57777765555543
Q ss_pred hCCCCeEEEEEeCccCCCcccchh-----HH-HhhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 300 NYMDKFIILAVNKCESPRKGIMQV-----SE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 300 ~~~~~p~ivV~NK~Dl~~~~~~~~-----~~-~~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.+.++++|+||+|+........ .. ....+++++++||++| |+++++.++.+.+.+
T Consensus 154 --~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 154 --NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp --TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred --hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 3679999999999986533221 11 2345789999999999 999999998887653
No 203
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.40 E-value=1.6e-14 Score=138.20 Aligned_cols=148 Identities=14% Similarity=0.060 Sum_probs=92.3
Q ss_pred cccccccccccccccccCCCCchHHHHhhhcC-CCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHh
Q 016883 35 ILRSFSPQLLSLSLHKHYPLPLPLTRHLRSLS-PSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDAL 113 (381)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~ 113 (381)
......-.+++++...|.+....+.|||+.+. ..++++||+||+||.+..+. +.....+.+.|...+++.+.+++.
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~---~~~~~~~~~~y~~~g~~v~~~sa~ 159 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDT---EDTIQAYAEDYRNIGYDVYLTSSK 159 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHH---HHHHHHHHHHHHHHTCCEEECCHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhh---HHHHHHHHHHHHhCCCeEEEEecC
Confidence 33334445678888888888889999998764 46899999999999743210 001234457777778888888887
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccC
Q 016883 114 EREAKDAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVD 193 (381)
Q Consensus 114 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~ 193 (381)
++.+ +.. +.....++ .++++|++|||||||+|.|.+.....++.
T Consensus 160 ~~~g---~~~------------------L~~~~~G~---------------~~~lvG~sG~GKSTLln~L~g~~~~~~G~ 203 (307)
T 1t9h_A 160 DQDS---LAD------------------IIPHFQDK---------------TTVFAGQSGVGKSSLLNAISPELGLRTNE 203 (307)
T ss_dssp HHTT---CTT------------------TGGGGTTS---------------EEEEEESHHHHHHHHHHHHCC--------
T ss_pred CCCC---HHH------------------HHhhcCCC---------------EEEEECCCCCCHHHHHHHhcccccccccc
Confidence 7655 111 11111122 78999999999999999999875444443
Q ss_pred CC-------CcccccceeeEEeCCceEEEEEcCCCCCcc
Q 016883 194 EP-------GVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (381)
Q Consensus 194 ~~-------~tt~~~~~~~~~~~~~~~~liDTPG~~~~~ 225 (381)
.. ++|+.... +... ..+++||||+..+.
T Consensus 204 I~~~~~~G~~tt~~~~~--~~~~--~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 204 ISEHLGRGKHTTRHVEL--IHTS--GGLVADTPGFSSLE 238 (307)
T ss_dssp -----------CCCCCE--EEET--TEEEESSCSCSSCC
T ss_pred eeeecCCCcccccHHHH--hhcC--CEEEecCCCccccc
Confidence 33 44544332 2222 24899999997643
No 204
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.37 E-value=5.3e-14 Score=131.92 Aligned_cols=113 Identities=24% Similarity=0.270 Sum_probs=70.1
Q ss_pred CCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhhhhhhhhhhhchhhhhhhhhh
Q 016883 68 SNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSLLSRQLIIQDETDDRKDSGKK 147 (381)
Q Consensus 68 ~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~ 147 (381)
.+|.++|+||+|+.+.. ....+.+.|+..+++. .+|+.++.+...+.+. +...+
T Consensus 46 ~k~~iivlNK~DL~~~~-------~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~---l~~~~--------------- 99 (262)
T 3cnl_A 46 RKETIILLNKVDIADEK-------TTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKL---SFDRL--------------- 99 (262)
T ss_dssp TSEEEEEEECGGGSCHH-------HHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHH---CCCTT---------------
T ss_pred CCCcEEEEECccCCCHH-------HHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHH---HHHhh---------------
Confidence 68999999999997421 1122223444445565 7788777763333222 11100
Q ss_pred ccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCCceEEEEEcCCCCCcc
Q 016883 148 QKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (381)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~~~~ 225 (381)
.+++++|.+|+|||||+|+|.+.....++..+++|+..+...+ +..+.+|||||+....
T Consensus 100 ----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL---ENGVKILDTPGILYKN 158 (262)
T ss_dssp ----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC---TTSCEEESSCEECCCC
T ss_pred ----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe---CCCEEEEECCCcccCc
Confidence 4899999999999999999999887778888998887754322 4578999999998643
No 205
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.26 E-value=5.2e-11 Score=117.57 Aligned_cols=64 Identities=23% Similarity=0.261 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC-----------------ceEEEEEcCCCCCcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-----------------HEFMLVDTGGVLNVS 225 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~~~liDTPG~~~~~ 225 (381)
..+++++|++|||||||+|+|++...+.++++|++|.+...+.+.+.+ ..+.++||||+....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 458999999999999999999998766889999999999888887765 357999999997654
Q ss_pred C
Q 016883 226 K 226 (381)
Q Consensus 226 ~ 226 (381)
.
T Consensus 100 s 100 (392)
T 1ni3_A 100 S 100 (392)
T ss_dssp C
T ss_pred c
Confidence 4
No 206
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.26 E-value=8.6e-12 Score=112.92 Aligned_cols=55 Identities=11% Similarity=0.109 Sum_probs=40.8
Q ss_pred CCeEEEEEeCccCCCcc--cch-hHHH-h--hCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 303 DKFIILAVNKCESPRKG--IMQ-VSEF-W--SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 303 ~~p~ivV~NK~Dl~~~~--~~~-~~~~-~--~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
+.|.++|+||+|+.+.. ..+ .... . ..+.+++++||++|+|+++++++|.+.+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 68899999999986532 111 1111 1 235689999999999999999999887754
No 207
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.26 E-value=3.1e-13 Score=131.77 Aligned_cols=138 Identities=18% Similarity=0.105 Sum_probs=89.4
Q ss_pred cccccccccCCCCchHHHHhhhcC-CCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHH
Q 016883 43 LLSLSLHKHYPLPLPLTRHLRSLS-PSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAV 121 (381)
Q Consensus 43 ~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l 121 (381)
+++.|.. |.+.+..++|||..++ ..++++||+||+||.+.+. ......+...|...|++++.+|+.++.+...+
T Consensus 135 ~iv~a~~-P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~----~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L 209 (358)
T 2rcn_A 135 VIVSAIL-PELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEG----MDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPL 209 (358)
T ss_dssp EEEEEST-TTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHH----HHHHHHHHHHHHTTTCCEEECBTTTTBTHHHH
T ss_pred EEEEeCC-CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchh----HHHHHHHHHHHHhCCCcEEEEecCCCcCHHHH
Confidence 5677875 7788889999997653 3589999999999974321 01122344678888999999998887763322
Q ss_pred HHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCc-ccccCCC---C-
Q 016883 122 REYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNR-AIVVDEP---G- 196 (381)
Q Consensus 122 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~-~~~~~~~---~- 196 (381)
... ..+. .++++|++|||||||+|.|.+... ..++... +
T Consensus 210 ~~~---------------------~~G~---------------~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~ 253 (358)
T 2rcn_A 210 EEA---------------------LTGR---------------ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGL 253 (358)
T ss_dssp HHH---------------------HTTS---------------EEEEECCTTSSHHHHHHHHHCCSSCCCCC--------
T ss_pred HHh---------------------cCCC---------------EEEEECCCCccHHHHHHHHhccccccccCCccccCCC
Confidence 211 1111 789999999999999999998764 4333322 1
Q ss_pred ---cccccceeeEEeCCceEEEEEcCCCCCc
Q 016883 197 ---VTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (381)
Q Consensus 197 ---tt~~~~~~~~~~~~~~~~liDTPG~~~~ 224 (381)
+|.......+ . ....++||||+.++
T Consensus 254 g~~tt~~~~i~~v--~-q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 254 GQHTTTAARLYHF--P-HGGDVIDSPGVREF 281 (358)
T ss_dssp -----CCCEEEEC--T-TSCEEEECHHHHTC
T ss_pred CccceEEEEEEEE--C-CCCEecCcccHHHh
Confidence 3333222222 1 22368999998764
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.25 E-value=8e-13 Score=126.37 Aligned_cols=145 Identities=17% Similarity=0.105 Sum_probs=92.8
Q ss_pred cccccccccccccccccCCCCchHHHHhhhcC-CCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHh
Q 016883 35 ILRSFSPQLLSLSLHKHYPLPLPLTRHLRSLS-PSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDAL 113 (381)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~ 113 (381)
..+...--++++++..|.+....+.+|+..+. ...|++||+||+|+.+.... ....++.+.|...+++.+.+|+.
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v----~~~~~~~~~~~~~g~~~~~~SA~ 151 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEK----KELERWISIYRDAGYDVLKVSAK 151 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHH----HHHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCcccc----HHHHHHHHHHHHCCCeEEEEECC
Confidence 34555556788999888777778899987654 35899999999999642110 00122234455556788899998
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccC
Q 016883 114 EREAKDAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVD 193 (381)
Q Consensus 114 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~ 193 (381)
++++...+.+. + .+ ..++++|++|+|||||+|.|. .....++.
T Consensus 152 ~g~gi~~L~~~---l------------------~G---------------~i~~l~G~sG~GKSTLln~l~-~~~~~~G~ 194 (302)
T 2yv5_A 152 TGEGIDELVDY---L------------------EG---------------FICILAGPSGVGKSSILSRLT-GEELRTQE 194 (302)
T ss_dssp TCTTHHHHHHH---T------------------TT---------------CEEEEECSTTSSHHHHHHHHH-SCCCCCSC
T ss_pred CCCCHHHHHhh---c------------------cC---------------cEEEEECCCCCCHHHHHHHHH-HhhCcccc
Confidence 88873322222 1 11 177999999999999999999 65444444
Q ss_pred CCC-------cccccceeeEEeCCceEEEEEcCCCCC
Q 016883 194 EPG-------VTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (381)
Q Consensus 194 ~~~-------tt~~~~~~~~~~~~~~~~liDTPG~~~ 223 (381)
... +|..... .... ...+++||||+..
T Consensus 195 i~~~~~~G~~~t~~~~~--~~~~-~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 195 VSEKTERGRHTTTGVRL--IPFG-KGSFVGDTPGFSK 228 (302)
T ss_dssp C---------CCCCEEE--EEET-TTEEEESSCCCSS
T ss_pred cccccCCCCCceeeEEE--EEcC-CCcEEEECcCcCc
Confidence 332 3333221 1221 2348999999864
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.12 E-value=1.1e-10 Score=118.80 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=92.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHh------CCCcccccCCCCcc-----------cc-cc-ee----------------eE
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVT-----------RD-RM-YG----------------RS 206 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~------~~~~~~~~~~~~tt-----------~~-~~-~~----------------~~ 206 (381)
....|+++|.+||||||++++|. +..+..+...+... .. .. .. .+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998 55443333221100 00 00 00 00
Q ss_pred EeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCC
Q 016883 207 FWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL 286 (381)
Q Consensus 207 ~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~ 286 (381)
...+..+.||||||.... ....++++ . .... .-.+|.+++|+|+..+.
T Consensus 180 ~~~~~DvvIIDTpG~~~~---~~~l~~el---------------------------~-~~~~-~i~pd~vllVvDa~~g~ 227 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ---EDSLFEEM---------------------------L-QVAN-AIQPDNIVYVMDASIGQ 227 (504)
T ss_dssp HHTTCCEEEEEECCCCTT---CHHHHHHH---------------------------H-HHHH-HHCCSEEEEEEETTCCT
T ss_pred HHCCCcEEEEeCCCCccc---chhHHHHH---------------------------H-HHHh-hhcCceEEEEEeccccc
Confidence 115667999999998642 11222222 0 1111 22789999999998764
Q ss_pred ChhHHHHHHHHHHhCCCCeE-EEEEeCccCCCcccchhHHHhhCCC------------------ceEEEecCCCCC-HHH
Q 016883 287 TAADEEIADWLRKNYMDKFI-ILAVNKCESPRKGIMQVSEFWSLGF------------------SPLPISAISGTG-TGE 346 (381)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~p~-ivV~NK~Dl~~~~~~~~~~~~~~~~------------------~~~~vSA~~g~g-i~~ 346 (381)
. .......+.+ ..|+ ++|+||+|...............+. +.+++|+.+|.| +++
T Consensus 228 ~--~~~~a~~~~~---~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~ 302 (504)
T 2j37_W 228 A--CEAQAKAFKD---KVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEG 302 (504)
T ss_dssp T--HHHHHHHHHH---HHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTT
T ss_pred c--HHHHHHHHHh---hcCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHH
Confidence 3 3334444443 2674 8999999987543211111111111 345689999999 999
Q ss_pred HHHHHHHH
Q 016883 347 LLDLVCSE 354 (381)
Q Consensus 347 l~~~i~~~ 354 (381)
|++++.+.
T Consensus 303 Lie~i~e~ 310 (504)
T 2j37_W 303 LIDKVNEL 310 (504)
T ss_dssp THHHHTTT
T ss_pred HHHHHHHH
Confidence 99999866
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.07 E-value=1.8e-10 Score=113.56 Aligned_cols=90 Identities=24% Similarity=0.258 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEeCC-----------------ceEEEEEcCCCCCcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-----------------HEFMLVDTGGVLNVS 225 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~~~liDTPG~~~~~ 225 (381)
..+|+++|.+|||||||+|+|++... .++++|++|.+...+.+.+.+ ..+.+|||||+..+.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 45899999999999999999999874 778889999888777766554 248999999998654
Q ss_pred CCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC
Q 016883 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (381)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~ 284 (381)
.....+ ...+..+++.+|++++|+|+.+
T Consensus 101 s~~~gl-------------------------------g~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 101 HNGQGL-------------------------------GNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp -------------------------------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred chhhHH-------------------------------HHHHHHHHHhcCeEEEEEecCC
Confidence 322211 1245577889999999999864
No 211
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.06 E-value=3.4e-11 Score=114.94 Aligned_cols=145 Identities=19% Similarity=0.111 Sum_probs=87.7
Q ss_pred ccccccccccccccccCCCCchHHHHhhhcC-CCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhh
Q 016883 36 LRSFSPQLLSLSLHKHYPLPLPLTRHLRSLS-PSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALE 114 (381)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~ 114 (381)
.|...-.+++++...+......+.+|+.... ...|++||+||+|+.+.... .+..++.+.|... +..+.+||.+
T Consensus 82 ~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v----~~~~~~~~~~~~~-~~~~~~SAkt 156 (301)
T 1u0l_A 82 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDL----RKVRELEEIYSGL-YPIVKTSAKT 156 (301)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHH----HHHHHHHHHHTTT-SCEEECCTTT
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhH----HHHHHHHHHHhhh-CcEEEEECCC
Confidence 3444556788888887666678889986543 46899999999998632110 0112222334433 5677888888
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhchhhhhhhhhhccccccccCCCCCCCCCEEEEEcCCCCChhHHHHHHhCCCcccccCC
Q 016883 115 REAKDAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE 194 (381)
Q Consensus 115 ~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~ 194 (381)
+.+ +.+.+..+ .++ .++++|++|+|||||+|.|.+...+..+..
T Consensus 157 g~g---v~~lf~~l------------------~ge---------------iv~l~G~sG~GKSTll~~l~g~~~~~~G~i 200 (301)
T 1u0l_A 157 GMG---IEELKEYL------------------KGK---------------ISTMAGLSGVGKSSLLNAINPGLKLRVSEV 200 (301)
T ss_dssp CTT---HHHHHHHH------------------SSS---------------EEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CcC---HHHHHHHh------------------cCC---------------eEEEECCCCCcHHHHHHHhcccccccccce
Confidence 877 33322221 111 779999999999999999998754433333
Q ss_pred C-------CcccccceeeEEeCCceEEEEEcCCCCCc
Q 016883 195 P-------GVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (381)
Q Consensus 195 ~-------~tt~~~~~~~~~~~~~~~~liDTPG~~~~ 224 (381)
. ++|..... .... ....++||||+...
T Consensus 201 ~~~~~~g~~~t~~~~~--~~~~-~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 201 SEKLQRGRHTTTTAQL--LKFD-FGGYVVDTPGFANL 234 (301)
T ss_dssp ---------CCCSCCE--EECT-TSCEEESSCSSTTC
T ss_pred ecccCCCCCceeeeEE--EEcC-CCCEEEECcCCCcc
Confidence 2 23333222 1221 22489999998653
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.04 E-value=6.7e-10 Score=110.46 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=80.1
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCccc--cc-CCCCcccccceeeEEeCC--ceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAI--VV-DEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~--~~-~~~~tt~~~~~~~~~~~~--~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
++++++|++|+|||||+|.|+|..... .. ..++.+...........+ ..+.++|+||+..... ..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~--~~-------- 112 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQIN--KE-------- 112 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CC--HH--------
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccc--cc--------
Confidence 359999999999999999999874211 11 122233322211112112 2578999999865211 10
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHh-------------cc--cc-EEEEEEeCCCCCChhHHHHHHHHHHhCC
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAI-------------EE--SC-VIIFLVDGQAGLTAADEEIADWLRKNYM 302 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------------~~--~d-~ii~VvD~~~~~~~~~~~~~~~l~~~~~ 302 (381)
.....+..++..++..++ .. +| +++|++|+.++++..|.++++.+. .
T Consensus 113 --------------~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~---~ 175 (427)
T 2qag_B 113 --------------DSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD---S 175 (427)
T ss_dssp --------------HHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC---S
T ss_pred --------------hhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh---h
Confidence 000111112222221111 12 23 466677888899999988888776 3
Q ss_pred CCeEEEEEeCccCCCcccchhHH------HhhCCCceEEEec
Q 016883 303 DKFIILAVNKCESPRKGIMQVSE------FWSLGFSPLPISA 338 (381)
Q Consensus 303 ~~p~ivV~NK~Dl~~~~~~~~~~------~~~~~~~~~~vSA 338 (381)
+.|+|+|+||+|.+.+....... +...+++++.+|.
T Consensus 176 ~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 176 KVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp CSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 89999999999998754332211 2234556666664
No 213
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.04 E-value=3.3e-10 Score=109.19 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=76.7
Q ss_pred eEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCC-
Q 016883 205 RSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ- 283 (381)
Q Consensus 205 ~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~- 283 (381)
.+..++..+.+|||+|+...+..+. .++..++++|+|+|.+
T Consensus 161 ~~~~~~v~l~iwDtgGQe~~R~~w~--------------------------------------~yf~~~~~iIfV~dls~ 202 (327)
T 3ohm_A 161 PFDLQSVIFRMVDVGGQRSERRKWI--------------------------------------HCFENVTSIMFLVALSE 202 (327)
T ss_dssp EEEETTEEEEEEEECCSHHHHTTGG--------------------------------------GGCSSCSEEEEEEEGGG
T ss_pred EEEeeceeeEEEEcCCchhHHHHHH--------------------------------------HHhCCCCEEEEEEECcc
Confidence 3455667889999999976555333 5778999999999765
Q ss_pred ------CCCCh---h-HHHHHHHHHH--hCCCCeEEEEEeCccCCCcc-------------------cchhHHH------
Q 016883 284 ------AGLTA---A-DEEIADWLRK--NYMDKFIILAVNKCESPRKG-------------------IMQVSEF------ 326 (381)
Q Consensus 284 ------~~~~~---~-~~~~~~~l~~--~~~~~p~ivV~NK~Dl~~~~-------------------~~~~~~~------ 326 (381)
+.... . ...++..+.. .+.+.|+++++||+|+.... ..+...+
T Consensus 203 ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~ 282 (327)
T 3ohm_A 203 YDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFV 282 (327)
T ss_dssp GGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHH
T ss_pred ccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHH
Confidence 21111 1 1234444433 23589999999999985421 1111111
Q ss_pred -----hhCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 327 -----WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 327 -----~~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
...++.++++||+++.||+.+|+.+.+.+.+
T Consensus 283 ~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 283 DLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp SSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 1123467899999999999999999887654
No 214
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.03 E-value=2e-09 Score=106.91 Aligned_cols=157 Identities=19% Similarity=0.158 Sum_probs=93.9
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccC----CCCcccccceeeEEeC-CceEEEEEcCCCCCccCCCchhhhhhhhh
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVD----EPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~----~~~tt~~~~~~~~~~~-~~~~~liDTPG~~~~~~~~~~~~~~~~~~ 238 (381)
..++++|++|+|||||+|.|.|......+. ...+|+... ..... ...+.++|+||+......-..
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~~~~~~~-------- 139 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTNFPPDT-------- 139 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSSCCHHH--------
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccchHHHHHH--------
Confidence 388999999999999999999853211111 111222211 11111 135789999998532111111
Q ss_pred hccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCC--
Q 016883 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP-- 316 (381)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~-- 316 (381)
+++. ..+...+.+++ ++... ...++..+...+... ++|+++|+||.|+.
T Consensus 140 ----------------------~L~~---~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~--~~p~~lV~tkpdlllL 190 (413)
T 1tq4_A 140 ----------------------YLEK---MKFYEYDFFII-ISATR-FKKNDIDIAKAISMM--KKEFYFVRTKVDSDIT 190 (413)
T ss_dssp ----------------------HHHH---TTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHT--TCEEEEEECCHHHHHH
T ss_pred ----------------------HHHH---cCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhc--CCCeEEEEecCccccc
Confidence 1111 11334455555 67654 466777788888776 89999999999974
Q ss_pred -------Ccc----cchhHHHh------hCC---CceEEEec--CCCCCHHHHHHHHHHHhhhcc
Q 016883 317 -------RKG----IMQVSEFW------SLG---FSPLPISA--ISGTGTGELLDLVCSELKKVE 359 (381)
Q Consensus 317 -------~~~----~~~~~~~~------~~~---~~~~~vSA--~~g~gi~~l~~~i~~~l~~~~ 359 (381)
+.. ..+..... ..+ ..+|.+|+ ..+.|++++.+.+.+.+++..
T Consensus 191 DEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 191 NEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 111 11111111 122 36799999 667789999999999987665
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.01 E-value=1e-09 Score=103.18 Aligned_cols=132 Identities=18% Similarity=0.235 Sum_probs=75.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCCcccccC-------CCCcccccceeeEEe-C--CceEEEEEcCCCCCccCCCc--hh
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVD-------EPGVTRDRMYGRSFW-G--EHEFMLVDTGGVLNVSKSQP--NI 231 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~~~~~~~-------~~~tt~~~~~~~~~~-~--~~~~~liDTPG~~~~~~~~~--~~ 231 (381)
++++++|++|+|||||+|.|++......+. .+.+........+.- . ...++++|+||+........ ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 478999999999999999999764322221 111111111111111 1 12578999999865322111 01
Q ss_pred hhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHH----------HhccccEEEEEEeCC-CCCChhHHHHHHHHHHh
Q 016883 232 MEDLAITTTIGMEGIPLATREAAVARMPSMIERQATA----------AIEESCVIIFLVDGQ-AGLTAADEEIADWLRKN 300 (381)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~l~~~d~ii~VvD~~-~~~~~~~~~~~~~l~~~ 300 (381)
+.++ +...+...... .+..++++++++|.. +++...+.++++.+.+
T Consensus 83 i~~~----------------------~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~- 139 (270)
T 3sop_A 83 IEKY----------------------INEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK- 139 (270)
T ss_dssp HHHH----------------------HHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT-
T ss_pred HHHH----------------------HHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh-
Confidence 1111 00011111111 123468899999954 7899999888888876
Q ss_pred CCCCeEEEEEeCccCCCccc
Q 016883 301 YMDKFIILAVNKCESPRKGI 320 (381)
Q Consensus 301 ~~~~p~ivV~NK~Dl~~~~~ 320 (381)
..++++|+||+|......
T Consensus 140 --~~~vI~Vi~K~D~lt~~e 157 (270)
T 3sop_A 140 --VVNIIPVIAKADTMTLEE 157 (270)
T ss_dssp --TSEEEEEETTGGGSCHHH
T ss_pred --cCcEEEEEeccccCCHHH
Confidence 489999999999887543
No 216
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.01 E-value=2.5e-10 Score=110.49 Aligned_cols=115 Identities=12% Similarity=0.143 Sum_probs=76.3
Q ss_pred eEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCC
Q 016883 205 RSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (381)
Q Consensus 205 ~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~ 284 (381)
.+..++..+.+|||+|+...+ ..+..++..++++|||+|.++
T Consensus 155 ~~~~~~v~l~iwDtaGQe~~R--------------------------------------~~w~~yy~~a~~iIfV~diS~ 196 (340)
T 4fid_A 155 DFVVKDIPFHLIDVGGQRSER--------------------------------------KXWVSFFSDVDCAIFVTSLAE 196 (340)
T ss_dssp EEESSSCEEEEEECCSCHHHH--------------------------------------HHHHTTSCSCSEEEEEEEGGG
T ss_pred EEEeeeeeeccccCCCccccc--------------------------------------ccHHHHhccCCEEEEEEECCc
Confidence 345566788999999996532 245567899999999999872
Q ss_pred ----------CCChhH-HHHHHHHHH--hCCCCeEEEEEeCccCCCccc------------------chhHHH----h--
Q 016883 285 ----------GLTAAD-EEIADWLRK--NYMDKFIILAVNKCESPRKGI------------------MQVSEF----W-- 327 (381)
Q Consensus 285 ----------~~~~~~-~~~~~~l~~--~~~~~p~ivV~NK~Dl~~~~~------------------~~~~~~----~-- 327 (381)
.-...+ ..++..+.. .+.+.|+++++||+|+..... .+...+ .
T Consensus 197 ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~ 276 (340)
T 4fid_A 197 YDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTG 276 (340)
T ss_dssp TTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhccc
Confidence 111111 234444433 236899999999999853211 111110 1
Q ss_pred ----------h------------CCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 328 ----------S------------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 328 ----------~------------~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
. ..+.+.++||+++.||+.+|+.+.+.+.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 277 KLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp TSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 0 12456899999999999999999887654
No 217
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.95 E-value=6.4e-10 Score=108.44 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=81.0
Q ss_pred ceeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEe
Q 016883 202 MYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVD 281 (381)
Q Consensus 202 ~~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD 281 (381)
....+.+++..+.+|||+|+...+..+. .++..++++|||+|
T Consensus 184 ~~~~~~~~~~~l~iwDt~GQe~~r~~w~--------------------------------------~yf~~a~~iIfV~d 225 (353)
T 1cip_A 184 VETHFTFKDLHFKMFDVGGQRSERKKWI--------------------------------------HCFEGVTAIIFCVA 225 (353)
T ss_dssp EEEEEEETTEEEEEEEECCSGGGGGGGG--------------------------------------GGCTTCSEEEEEEE
T ss_pred EEEEEeeCCeeEEEEeCCCchhhhHHHH--------------------------------------HHHhcCCEEEEEEE
Confidence 3344566778899999999987655333 56789999999999
Q ss_pred CCCCCC----------hhH-HHHHHHHHH--hCCCCeEEEEEeCccCCCcc------------------cchhHHHh---
Q 016883 282 GQAGLT----------AAD-EEIADWLRK--NYMDKFIILAVNKCESPRKG------------------IMQVSEFW--- 327 (381)
Q Consensus 282 ~~~~~~----------~~~-~~~~~~l~~--~~~~~p~ivV~NK~Dl~~~~------------------~~~~~~~~--- 327 (381)
.++.-+ ..+ ..++..+.. .+.+.|+++|+||+|+.... ..+...+.
T Consensus 226 ls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~ 305 (353)
T 1cip_A 226 LSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQ 305 (353)
T ss_dssp GGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHH
T ss_pred CccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHH
Confidence 986311 111 334444443 23589999999999985221 11111111
Q ss_pred ---------hCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 328 ---------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 328 ---------~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
..++.++++||++|+||+++|+++.+.+.+
T Consensus 306 f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 306 FEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp HHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 234578999999999999999999887754
No 218
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.93 E-value=1.1e-09 Score=107.04 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=75.0
Q ss_pred eeeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeC
Q 016883 203 YGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDG 282 (381)
Q Consensus 203 ~~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~ 282 (381)
...+.+++..+.+|||+|+...+..+. .++..++++|||+|.
T Consensus 193 ~~~~~~~~~~l~i~Dt~Gq~~~r~~w~--------------------------------------~~f~~~~~iIfv~dl 234 (362)
T 1zcb_A 193 EYDFEIKNVPFKMVDVGGQRSERKRWF--------------------------------------ECFDSVTSILFLVSS 234 (362)
T ss_dssp EEEEEETTEEEEEEEECC-------CT--------------------------------------TSCTTCCEEEEEEET
T ss_pred EEEeeeCCeEEEEEeccchhhhhhhHH--------------------------------------HHhCCCCEEEEEEEC
Confidence 334566778899999999987655443 466789999999999
Q ss_pred CCC----------CChhH-HHHHHHHHH--hCCCCeEEEEEeCccCCCcc-------------------cchhHHHh---
Q 016883 283 QAG----------LTAAD-EEIADWLRK--NYMDKFIILAVNKCESPRKG-------------------IMQVSEFW--- 327 (381)
Q Consensus 283 ~~~----------~~~~~-~~~~~~l~~--~~~~~p~ivV~NK~Dl~~~~-------------------~~~~~~~~--- 327 (381)
++. -...+ ..++..+.. .+.+.|+|+|+||+|+.... ..+...+.
T Consensus 235 s~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~ 314 (362)
T 1zcb_A 235 SEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVEC 314 (362)
T ss_dssp TCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHH
Confidence 862 11111 334444443 24689999999999985211 11111111
Q ss_pred ---------hCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 328 ---------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 328 ---------~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
..++.++++||++|+||+++|+++.+.+.+
T Consensus 315 f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 315 FRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 234567899999999999999999887653
No 219
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.86 E-value=9.6e-09 Score=97.84 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=61.6
Q ss_pred HHhccccEEEEEEeCCCCC-ChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCcccch-hHHH-hhCC--CceEEEecCCC
Q 016883 268 AAIEESCVIIFLVDGQAGL-TAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEF-WSLG--FSPLPISAISG 341 (381)
Q Consensus 268 ~~l~~~d~ii~VvD~~~~~-~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~-~~~~-~~~~--~~~~~vSA~~g 341 (381)
.++.++|++++|+|++++. +... ..|+..+... ++|+++|+||+|+.+....+ ...+ ...+ .+++++||++|
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~--~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg 157 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTG 157 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCC
Confidence 4678999999999999865 3332 3455555554 89999999999998653311 1111 1123 78999999999
Q ss_pred CCHHHHHHHHHHH
Q 016883 342 TGTGELLDLVCSE 354 (381)
Q Consensus 342 ~gi~~l~~~i~~~ 354 (381)
.|+++++.++...
T Consensus 158 ~gv~~lf~~l~ge 170 (301)
T 1u0l_A 158 MGIEELKEYLKGK 170 (301)
T ss_dssp TTHHHHHHHHSSS
T ss_pred cCHHHHHHHhcCC
Confidence 9999999987653
No 220
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.82 E-value=3.5e-08 Score=98.51 Aligned_cols=146 Identities=18% Similarity=0.226 Sum_probs=84.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHh------CCCcccccCCCCcc-----------------------cccc------eeeEE
Q 016883 163 LPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVT-----------------------RDRM------YGRSF 207 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~------~~~~~~~~~~~~tt-----------------------~~~~------~~~~~ 207 (381)
+..|+++|.+|+||||+++.|. +..+..+...+... .+.. .....
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999887 33322222111100 0000 00000
Q ss_pred eCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCC
Q 016883 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT 287 (381)
Q Consensus 208 ~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~ 287 (381)
..+..+.|+||||.... ....+.++ ........+|.+++|+|+..+.
T Consensus 180 ~~~~DvVIIDTaGrl~~---d~~lm~el-----------------------------~~i~~~~~pd~vlLVvDA~~gq- 226 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE---DKALIEEM-----------------------------KQISNVIHPHEVILVIDGTIGQ- 226 (443)
T ss_dssp HTTCSEEEEECCCCSSC---CHHHHHHH-----------------------------HHHHHHHCCSEEEEEEEGGGGG-
T ss_pred hCCCCEEEEECCCcccc---hHHHHHHH-----------------------------HHHHHhhcCceEEEEEeCCCch-
Confidence 12467899999997532 22233332 1122334689999999998642
Q ss_pred hhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHH
Q 016883 288 AADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGE 346 (381)
Q Consensus 288 ~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~ 346 (381)
........+.+. -.+..+|+||+|...............+.|+.+++. |+++++
T Consensus 227 -~a~~~a~~f~~~--~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 227 -QAYNQALAFKEA--TPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp -GHHHHHHHHHHS--CTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred -hHHHHHHHHHhh--CCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEc--CCChHH
Confidence 223444555543 456678999999876543222222346788888886 776654
No 221
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.80 E-value=1.1e-08 Score=105.84 Aligned_cols=61 Identities=33% Similarity=0.492 Sum_probs=45.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCCcccccCCCCcccccceeeEEe-------CCceEEEEEcCCCCCcc
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-------GEHEFMLVDTGGVLNVS 225 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~~~~~~~~~~tt~~~~~~~~~~-------~~~~~~liDTPG~~~~~ 225 (381)
..+|+++|.+|+|||||+|+|++..... ..+++|.+.+.+...+ .+..+.++||||+.+..
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 3489999999999999999999986432 4555555554444322 45689999999998654
No 222
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.79 E-value=3.3e-09 Score=106.03 Aligned_cols=158 Identities=19% Similarity=0.237 Sum_probs=87.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC------CcccccCCCC------------------------cccccc----eeeEEe
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG------NRAIVVDEPG------------------------VTRDRM----YGRSFW 208 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~------~~~~~~~~~~------------------------tt~~~~----~~~~~~ 208 (381)
...|+++|.+|+||||+++.|... .+..+...+. ++.+.. ......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998763 1211111100 222210 000012
Q ss_pred CCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCCCCCCh
Q 016883 209 GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA 288 (381)
Q Consensus 209 ~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~~~~~~ 288 (381)
.+..+.|+||||.... ....+.++ .....+..+|.+++|+|+..+.
T Consensus 179 ~~~D~vIIDT~G~~~~---~~~l~~~l-----------------------------~~i~~~~~~d~vllVvda~~g~-- 224 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE---EKGLLEEM-----------------------------KQIKEITNPDEIILVIDGTIGQ-- 224 (432)
T ss_dssp SSCSEEEEECCCSCSS---HHHHHHHH-----------------------------HHTTSSSCCSEEEEEEEGGGGG--
T ss_pred hCCCEEEEcCCCCccc---cHHHHHHH-----------------------------HHHHHHhcCcceeEEeeccccH--
Confidence 4567899999998642 11111111 1112223689999999987653
Q ss_pred hHHHHHHHHHHhCCCC-e-EEEEEeCccCCCcccchhHHHhhCCCc------------------eEEEecCCCCC-HHHH
Q 016883 289 ADEEIADWLRKNYMDK-F-IILAVNKCESPRKGIMQVSEFWSLGFS------------------PLPISAISGTG-TGEL 347 (381)
Q Consensus 289 ~~~~~~~~l~~~~~~~-p-~ivV~NK~Dl~~~~~~~~~~~~~~~~~------------------~~~vSA~~g~g-i~~l 347 (381)
........+.. .. | ..+|+||+|...............+.| ..++|+..|.| +..|
T Consensus 225 ~~~~~~~~~~~---~~~~i~gvVlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L 301 (432)
T 2v3c_C 225 QAGIQAKAFKE---AVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESL 301 (432)
T ss_dssp GHHHHHHHHHT---TSCSCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTT
T ss_pred HHHHHHHHHhh---cccCCeEEEEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHH
Confidence 11222233322 45 5 889999999865322111111222223 34568888988 8888
Q ss_pred HHHHHHHhhh
Q 016883 348 LDLVCSELKK 357 (381)
Q Consensus 348 ~~~i~~~l~~ 357 (381)
++.+.+.+.+
T Consensus 302 ~e~~~~~~~e 311 (432)
T 2v3c_C 302 LEKAEDMVDE 311 (432)
T ss_dssp SSTTTSCSCS
T ss_pred HHHHHHHHHh
Confidence 8777665543
No 223
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.77 E-value=6.5e-09 Score=102.76 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=79.1
Q ss_pred eeEEeCCceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCC
Q 016883 204 GRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (381)
Q Consensus 204 ~~~~~~~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~ 283 (381)
..+.+++..+.+|||+|+...+..+. .++..++++|||+|.+
T Consensus 210 ~~~~~~~v~l~iwDtaGQe~~r~~w~--------------------------------------~yf~~a~~iIfV~dis 251 (402)
T 1azs_C 210 TKFQVDKVNFHMFDVGGQRDERRKWI--------------------------------------QCFNDVTAIIFVVASS 251 (402)
T ss_dssp EEEEETTEEEEEEEECCSGGGGGGGG--------------------------------------GGTTTCCEEEEEEETT
T ss_pred EEeecCCccceecccchhhhhhhhhH--------------------------------------hhccCCCEEEEEEECc
Confidence 34566778899999999987655333 5678999999999998
Q ss_pred C----------CCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCccc------------------------------
Q 016883 284 A----------GLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRKGI------------------------------ 320 (381)
Q Consensus 284 ~----------~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~~~------------------------------ 320 (381)
+ .-+..+ ..++..+... +.+.|+++|+||+|+.....
T Consensus 252 ~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~ 331 (402)
T 1azs_C 252 SYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGED 331 (402)
T ss_dssp GGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCC
T ss_pred ccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCc
Confidence 6 222222 3345555442 46799999999999743211
Q ss_pred ---chhHHH-----hh---------CCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 321 ---MQVSEF-----WS---------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 321 ---~~~~~~-----~~---------~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.+...+ .. ..+.++++||++++||+++|.++.+.+..
T Consensus 332 ~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~~ 385 (402)
T 1azs_C 332 PRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHHH
Confidence 011111 01 13456799999999999999998887653
No 224
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.72 E-value=7.9e-09 Score=100.72 Aligned_cols=110 Identities=21% Similarity=0.268 Sum_probs=72.3
Q ss_pred CceEEEEEcCCCCCccCCCchhhhhhhhhhccCCCCCchhhHHHHHhcchhHHHHHHHHHhccccEEEEEEeCC------
Q 016883 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ------ 283 (381)
Q Consensus 210 ~~~~~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~ii~VvD~~------ 283 (381)
...+.+|||+|+...+..+. .++..++++|+|+|.+
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~--------------------------------------~y~~~~~~iI~v~dis~ydq~l 223 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWI--------------------------------------HLFEGVTAVIFCAAISEYDQTL 223 (354)
T ss_dssp --EEEEEEECCSTTGGGGTG--------------------------------------GGCTTEEEEEEEEEGGGTTCBC
T ss_pred ceeeEEEECCCchhhhHHHH--------------------------------------HHhCCCCEEEEEEECccccccc
Confidence 35689999999987665443 5678999999999987
Q ss_pred ----CCCChhH-HHHHHHHHHh--CCCCeEEEEEeCccCCCccc------------------------chhHHH-h----
Q 016883 284 ----AGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESPRKGI------------------------MQVSEF-W---- 327 (381)
Q Consensus 284 ----~~~~~~~-~~~~~~l~~~--~~~~p~ivV~NK~Dl~~~~~------------------------~~~~~~-~---- 327 (381)
+.-+..+ ..++..+... +.+.|+++|+||+|+..... .+...+ .
T Consensus 224 ~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~ 303 (354)
T 2xtz_A 224 FEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFE 303 (354)
T ss_dssp SSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHH
Confidence 2111111 2344444432 35899999999999843211 111111 0
Q ss_pred ------------hCCCceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 328 ------------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 328 ------------~~~~~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
...+.++++||++|+||+++|+++.+.+.+
T Consensus 304 ~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 304 ELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR 345 (354)
T ss_dssp HHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence 012346899999999999999999887653
No 225
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.66 E-value=2.4e-07 Score=83.18 Aligned_cols=93 Identities=10% Similarity=0.021 Sum_probs=62.8
Q ss_pred HHHHHhccccEEEEEEeCCCCCChhH-HHH---HHHHHHh--CCCCeEEEEEeCc-cCCCcc----cchhHHHh--hCCC
Q 016883 265 QATAAIEESCVIIFLVDGQAGLTAAD-EEI---ADWLRKN--YMDKFIILAVNKC-ESPRKG----IMQVSEFW--SLGF 331 (381)
Q Consensus 265 ~~~~~l~~~d~ii~VvD~~~~~~~~~-~~~---~~~l~~~--~~~~p~ivV~NK~-Dl~~~~----~~~~~~~~--~~~~ 331 (381)
.+..|+.++|++|||||+++...... .++ ...+.+. +.+.|++|+.||. |+...- +.+.+.+. ...|
T Consensus 118 lWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W 197 (227)
T 3l82_B 118 QIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPW 197 (227)
T ss_dssp CHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCE
T ss_pred HHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCE
Confidence 45578899999999999987532222 233 2223232 3588999999996 664421 11111111 2456
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 332 SPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 332 ~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.+.+|||++|+|+.+-++||.+.+..
T Consensus 198 ~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 198 LVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp EEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred EEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 78999999999999999999987764
No 226
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.56 E-value=1.8e-07 Score=93.28 Aligned_cols=68 Identities=16% Similarity=0.207 Sum_probs=44.1
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHH
Q 016883 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTG 345 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~ 345 (381)
.+|.+++|+|+..+ .........+.+. -.+..+|+||+|...............+.|+.+++. |++++
T Consensus 211 ~pd~vlLVlDa~~g--q~a~~~a~~f~~~--~~~~gVIlTKlD~~a~~G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 211 KPDDVILVIDASIG--QKAYDLASRFHQA--SPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp CCSEEEEEEEGGGG--GGGHHHHHHHHHH--CSSEEEEEECGGGCSCHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred CCcceEEEEeCccc--hHHHHHHHHHhcc--cCCcEEEEecccccccchHHHHHHHHHCCCEEEEEC--CCChH
Confidence 57899999999854 2224455555544 456789999999865432222222345788888886 77664
No 227
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.55 E-value=2e-07 Score=88.00 Aligned_cols=90 Identities=22% Similarity=0.366 Sum_probs=70.3
Q ss_pred HHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh-HHHh-hCCCceEEEecCCC
Q 016883 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV-SEFW-SLGFSPLPISAISG 341 (381)
Q Consensus 264 ~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~-~~~~-~~~~~~~~vSA~~g 341 (381)
+++...+..+|++++|+|+..+.+..+..+.+.+ .++|.++|+||+|+.+....+. ..+. ..+.+++++||++|
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~ 90 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNG 90 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTC
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCc
Confidence 4777889999999999999998777654443333 4899999999999987543332 2222 35779999999999
Q ss_pred CCHHHHHHHHHHHhhh
Q 016883 342 TGTGELLDLVCSELKK 357 (381)
Q Consensus 342 ~gi~~l~~~i~~~l~~ 357 (381)
.|+++|++.+.+.+..
T Consensus 91 ~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 91 QGLNQIVPASKEILQE 106 (282)
T ss_dssp TTGGGHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999999998887763
No 228
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.52 E-value=1.4e-07 Score=89.91 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=63.1
Q ss_pred HhccccEEEEEEeCCCCC-ChhH-HHHHHHHHHhCCCCeEEEEEeCccCCCccc----chhHH-HhhCCCceEEEecCCC
Q 016883 269 AIEESCVIIFLVDGQAGL-TAAD-EEIADWLRKNYMDKFIILAVNKCESPRKGI----MQVSE-FWSLGFSPLPISAISG 341 (381)
Q Consensus 269 ~l~~~d~ii~VvD~~~~~-~~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~----~~~~~-~~~~~~~~~~vSA~~g 341 (381)
++.++|++++|+|++++. +... ..++..+... ++|.++|+||+|+.++.. .+... +...+.+++++||++|
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~--~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g 153 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF--KVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTG 153 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC--CCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 578999999999999764 4432 3455555554 899999999999987542 11122 2345789999999999
Q ss_pred CCHHHHHHHHHHHh
Q 016883 342 TGTGELLDLVCSEL 355 (381)
Q Consensus 342 ~gi~~l~~~i~~~l 355 (381)
.|+++|++.+...+
T Consensus 154 ~gi~~L~~~l~G~i 167 (302)
T 2yv5_A 154 EGIDELVDYLEGFI 167 (302)
T ss_dssp TTHHHHHHHTTTCE
T ss_pred CCHHHHHhhccCcE
Confidence 99999998876543
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.49 E-value=8.7e-07 Score=84.16 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=43.9
Q ss_pred hccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCe-EEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHHH
Q 016883 270 IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-IILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (381)
Q Consensus 270 l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p-~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l 347 (381)
...+|.+++|+|+..+ .......+.+.+ ..+ ..+|+||+|...............+.|+..++ +|++++++
T Consensus 210 ~~~~d~vllVvda~~g--~~~~~~~~~~~~---~~~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 210 AIKPDEVTLVIDASIG--QKAYDLASKFNQ---ASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp HHCCSEEEEEEEGGGG--GGHHHHHHHHHH---TCTTEEEEEECGGGCTTHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred HhcCCEEEEEeeCCch--HHHHHHHHHHHh---hCCCCEEEEeCCCCCcchHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 3468999999998743 222333333333 355 77899999976432211112234577888877 68887764
No 230
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.32 E-value=1.4e-06 Score=85.31 Aligned_cols=86 Identities=20% Similarity=0.149 Sum_probs=61.9
Q ss_pred HHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccc-hhH----H--HhhCCC---ceEEE
Q 016883 267 TAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVS----E--FWSLGF---SPLPI 336 (381)
Q Consensus 267 ~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~-~~~----~--~~~~~~---~~~~v 336 (381)
..+...+|++++|+|+.++ +..+...+.+...++|+++|+||+|+.+.... +.. . ....+. +++.+
T Consensus 64 ~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~i 139 (368)
T 3h2y_A 64 NGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLI 139 (368)
T ss_dssp HHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEEC
T ss_pred HHHhccCcEEEEEEECCCC----cccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEE
Confidence 3445678899999999863 23444555555568999999999999765421 111 1 223455 78999
Q ss_pred ecCCCCCHHHHHHHHHHHhh
Q 016883 337 SAISGTGTGELLDLVCSELK 356 (381)
Q Consensus 337 SA~~g~gi~~l~~~i~~~l~ 356 (381)
||++|.|+++|++++.+...
T Consensus 140 SA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 140 SAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred eCCCCcCHHHHHhhhhhhcc
Confidence 99999999999999987654
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.29 E-value=4.3e-06 Score=87.08 Aligned_cols=25 Identities=36% Similarity=0.692 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.+.++++|++|+|||||++.|.|-.
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CCeEEEECCCCChHHHHHHHHhCCC
Confidence 4569999999999999999999864
No 232
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.25 E-value=6.2e-07 Score=83.64 Aligned_cols=84 Identities=15% Similarity=0.092 Sum_probs=63.0
Q ss_pred HHHHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchh-HHH-hhCCCceEEEecCCC
Q 016883 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV-SEF-WSLGFSPLPISAISG 341 (381)
Q Consensus 264 ~~~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~-~~~-~~~~~~~~~vSA~~g 341 (381)
++....+.++|++++|+|+..+.......+- .+ ++|.++|+||+|+.+....+. ..+ ...+.++ .+||++|
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-----ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~ 85 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-----FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGE 85 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-----CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTS
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-----hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCC
Confidence 3667788999999999999987766543221 12 899999999999987543322 222 2456788 9999999
Q ss_pred CCHHHHHHHHHHH
Q 016883 342 TGTGELLDLVCSE 354 (381)
Q Consensus 342 ~gi~~l~~~i~~~ 354 (381)
.|+++|++.+.+.
T Consensus 86 ~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 86 PRKVLLKKLSFDR 98 (262)
T ss_dssp CHHHHHHHHCCCT
T ss_pred cCHHHHHHHHHHh
Confidence 9999998887654
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.20 E-value=1.6e-06 Score=83.52 Aligned_cols=70 Identities=23% Similarity=0.245 Sum_probs=42.8
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHHH
Q 016883 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l 347 (381)
..|-.++++|+..+. .-.+.+..+.+. ....++++||.|...............+.|+..++ +|++++++
T Consensus 241 ~~de~llvLDa~t~~--~~~~~~~~~~~~--~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 241 KPNLVIFVGDALAGN--AIVEQARQFNEA--VKIDGIILTKLDADARGGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp CCSEEEEEEEGGGTT--HHHHHHHHHHHH--SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred cCCCCEEEEecHHHH--HHHHHHHHHHHh--cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 478899999976542 223344444432 23457889999974432222222344578988888 88888664
No 234
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.18 E-value=2.5e-06 Score=83.49 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=60.8
Q ss_pred HHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccc-hh-HH-----HhhCCC---ceEEEe
Q 016883 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QV-SE-----FWSLGF---SPLPIS 337 (381)
Q Consensus 268 ~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~-~~-~~-----~~~~~~---~~~~vS 337 (381)
.+...++++++|+|+.+..... ...+.+.+.++|+++|+||+|+.+.... +. .. +...+. +++.+|
T Consensus 67 ~~~~~~~lil~VvD~~d~~~s~----~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 142 (369)
T 3ec1_A 67 RIGESKALVVNIVDIFDFNGSF----IPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVS 142 (369)
T ss_dssp HHHHHCCEEEEEEETTCSGGGC----CSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECB
T ss_pred HhhccCcEEEEEEECCCCCCch----hhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 3447789999999999755332 2223333458999999999999875321 11 11 223454 689999
Q ss_pred cCCCCCHHHHHHHHHHHhhh
Q 016883 338 AISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 338 A~~g~gi~~l~~~i~~~l~~ 357 (381)
|++|.|+++|++.+.+..+.
T Consensus 143 A~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 143 AAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp TTTTBTHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhhccc
Confidence 99999999999999887643
No 235
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.18 E-value=4.5e-06 Score=78.47 Aligned_cols=93 Identities=11% Similarity=0.023 Sum_probs=63.6
Q ss_pred HHHHHhccccEEEEEEeCCCCCChhH-HH---HHHHHHHh--CCCCeEEEEEeC-ccCCCcc----cchhHHHh--hCCC
Q 016883 265 QATAAIEESCVIIFLVDGQAGLTAAD-EE---IADWLRKN--YMDKFIILAVNK-CESPRKG----IMQVSEFW--SLGF 331 (381)
Q Consensus 265 ~~~~~l~~~d~ii~VvD~~~~~~~~~-~~---~~~~l~~~--~~~~p~ivV~NK-~Dl~~~~----~~~~~~~~--~~~~ 331 (381)
.+..|+.++|++|||||+++...... .+ +...+.+. +.+.|++|+.|| .|+...- +.+.+... ...+
T Consensus 203 lWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W 282 (312)
T 3l2o_B 203 QIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPW 282 (312)
T ss_dssp HHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCE
T ss_pred HHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcE
Confidence 55678899999999999987533222 22 22333331 468999999997 5775431 11111111 2356
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHhhh
Q 016883 332 SPLPISAISGTGTGELLDLVCSELKK 357 (381)
Q Consensus 332 ~~~~vSA~~g~gi~~l~~~i~~~l~~ 357 (381)
.+.+|||++|+|+.+-++||.+.+..
T Consensus 283 ~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 283 LVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEEecccCCCcCHHHHHHHHHHHHHh
Confidence 78999999999999999999998764
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.17 E-value=1.5e-05 Score=79.48 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.1
Q ss_pred CCCEEEEEcCCCCChhHHHHHHh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~ 184 (381)
....|+++|.+|+||||+...|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34588899999999999999887
No 237
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.92 E-value=0.00013 Score=69.35 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=41.1
Q ss_pred hccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHHH
Q 016883 270 IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (381)
Q Consensus 270 l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l 347 (381)
...++.+++++|+..+.. -.+.+..+.+. ....++++||.|..........-....+.|+.+++ +|++++++
T Consensus 218 ~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~--~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig--~Ge~~~dl 289 (304)
T 1rj9_A 218 PEEPKEVWLVLDAVTGQN--GLEQAKKFHEA--VGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVG--VGEGPDDL 289 (304)
T ss_dssp TTCCSEEEEEEETTBCTH--HHHHHHHHHHH--HCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred cCCCCeEEEEEcHHHHHH--HHHHHHHHHHH--cCCcEEEEECCcccccccHHHHHHHHHCCCeEEEe--CCCChhhc
Confidence 445788899999875422 23333444332 12357889999875432222222234577887776 56666553
No 238
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.86 E-value=2.8e-05 Score=74.06 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=38.7
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHHH
Q 016883 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l 347 (381)
.+|.+++|+|+..+ .........+.+. -...-+|+||.|..........-....+.|+.+++. |++++++
T Consensus 222 ~p~~vllVlda~t~--~~~l~~a~~~~~~--~~i~gvVlTk~D~~~~gG~~l~~~~~~~~Pi~~i~~--Ge~~~dl 291 (306)
T 1vma_A 222 APHETLLVIDATTG--QNGLVQAKIFKEA--VNVTGIILTKLDGTAKGGITLAIARELGIPIKFIGV--GEKAEDL 291 (306)
T ss_dssp CCSEEEEEEEGGGH--HHHHHHHHHHHHH--SCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEEC--SSSGGGE
T ss_pred CCcEEEEEEECCCC--HHHHHHHHHHHhc--CCCCEEEEeCCCCccchHHHHHHHHHHCCCEEEEeC--CCChhhc
Confidence 47889999998722 1112222333332 223456789999754433222222445778887754 5556653
No 239
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.83 E-value=1.7e-05 Score=79.31 Aligned_cols=61 Identities=21% Similarity=0.311 Sum_probs=40.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC---------------CcccccCCCCcccccceeeEEeC-----------CceEEEE
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG---------------NRAIVVDEPGVTRDRMYGRSFWG-----------EHEFMLV 216 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~---------------~~~~~~~~~~tt~~~~~~~~~~~-----------~~~~~li 216 (381)
...|.|+|.+++|||||+|.|++. ..... ...++|...+.+...+. ...+.++
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f-~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGF-SWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSS-CSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhccccccccccccccccccee-cCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 348899999999999999999863 11111 22234555444444332 2358899
Q ss_pred EcCCCCCc
Q 016883 217 DTGGVLNV 224 (381)
Q Consensus 217 DTPG~~~~ 224 (381)
||||+.+.
T Consensus 146 DTeG~~~~ 153 (447)
T 3q5d_A 146 DTQGTFDS 153 (447)
T ss_dssp EEECCCSS
T ss_pred cCCccccc
Confidence 99999753
No 240
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.80 E-value=2.5e-05 Score=78.77 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=38.3
Q ss_pred ccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHH-HhhCCCceEEEecCCCCCHHHH
Q 016883 273 SCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSE-FWSLGFSPLPISAISGTGTGEL 347 (381)
Q Consensus 273 ~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~-~~~~~~~~~~vSA~~g~gi~~l 347 (381)
.+-+++|+|+..+ ......++.+.+.+ + ...+|+||.|-....- .... ....+.|+.++ -+|+++++|
T Consensus 412 P~evLLvLDattG--q~al~~ak~f~~~~-~-itgvIlTKLD~takgG-~~lsi~~~~~~PI~fi--g~Ge~vdDL 480 (503)
T 2yhs_A 412 PHEVMLTIDASTG--QNAVSQAKLFHEAV-G-LTGITLTKLDGTAKGG-VIFSVADQFGIPIRYI--GVGERIEDL 480 (503)
T ss_dssp SSEEEEEEEGGGT--HHHHHHHHHHHHHT-C-CSEEEEECGGGCSCCT-HHHHHHHHHCCCEEEE--ECSSSGGGE
T ss_pred CCeeEEEecCccc--HHHHHHHHHHHhhc-C-CCEEEEEcCCCccccc-HHHHHHHHHCCCEEEE--ecCCChhhc
Confidence 5678999998754 22233444444431 2 3457899999643322 2222 23456787775 456777663
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.76 E-value=1.1e-05 Score=76.91 Aligned_cols=82 Identities=10% Similarity=0.064 Sum_probs=59.3
Q ss_pred HhccccEEEEEEeCCCCCChhHHHHHHHHHH-hCCCCeEEEEEeCccCCCccc-----chhHHH-hhCCCceEEEecCCC
Q 016883 269 AIEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGI-----MQVSEF-WSLGFSPLPISAISG 341 (381)
Q Consensus 269 ~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~-~~~~~p~ivV~NK~Dl~~~~~-----~~~~~~-~~~~~~~~~vSA~~g 341 (381)
.+.++|.+++|+|+..+....+ .+-+++.. ...++|.++|+||+|+.++.. .+.... ...+.+++.+||.+|
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~ 161 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ 161 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4689999999999997766665 34344422 123899999999999987643 122222 245789999999999
Q ss_pred CCHHHHHHHH
Q 016883 342 TGTGELLDLV 351 (381)
Q Consensus 342 ~gi~~l~~~i 351 (381)
.|+++|++..
T Consensus 162 ~g~~~L~~~~ 171 (307)
T 1t9h_A 162 DSLADIIPHF 171 (307)
T ss_dssp TTCTTTGGGG
T ss_pred CCHHHHHhhc
Confidence 9998876654
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.76 E-value=5.6e-05 Score=75.13 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=37.8
Q ss_pred ccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHH
Q 016883 271 EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGE 346 (381)
Q Consensus 271 ~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~ 346 (381)
-.+|.+++|+|+..+ ..-......+... -...-+|+||.|...............+.|+..+. .|+.+++
T Consensus 209 ~~pd~vlLVvDa~tg--q~av~~a~~f~~~--l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg--~Ge~~~d 278 (425)
T 2ffh_A 209 LGPDEVLLVLDAMTG--QEALSVARAFDEK--VGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAG--VSEKPEG 278 (425)
T ss_dssp HCCSEEEEEEEGGGT--THHHHHHHHHHHH--TCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred cCCceEEEEEeccch--HHHHHHHHHHHhc--CCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEe--CCCChhh
Confidence 368899999998743 1112333333332 12356789999975433211111234567776665 3444544
No 243
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.75 E-value=0.00017 Score=69.05 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=38.2
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHHhCCCC-eEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHHH
Q 016883 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK-FIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~-p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l 347 (381)
.+|.+++|+++..+ . +.+..++...... ..-+|+||.|...............+.|+..+. .|++++++
T Consensus 227 ~~d~vllVl~a~~~--~---~~l~~~~~~~~~~~i~GvVltk~d~~~~~g~~~~~~~~~~~Pi~~i~--~Ge~~~dl 296 (320)
T 1zu4_A 227 APHEVLLVIDATTG--Q---NGVIQAEEFSKVADVSGIILTKMDSTSKGGIGLAIKELLNIPIKMIG--VGEKVDDL 296 (320)
T ss_dssp CCSEEEEEEEGGGT--H---HHHHHHHHHTTTSCCCEEEEECGGGCSCTTHHHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred CCceEEEEEECCCc--H---HHHHHHHHHhhcCCCcEEEEeCCCCCCchhHHHHHHHHHCcCEEEEe--CCCCcccc
Confidence 48899999998743 2 2233333332223 335789999975433211111234577876664 56666553
No 244
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.63 E-value=0.0001 Score=69.74 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...++++|++|+||||++..|.+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998763
No 245
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.62 E-value=7.6e-05 Score=70.58 Aligned_cols=69 Identities=12% Similarity=0.078 Sum_probs=34.8
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCCcccchhHHHhhCCCceEEEecCCCCCHHH
Q 016883 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGE 346 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~ 346 (381)
.+|.+++|+|+..+ ....+..+.+... -...-+|+||+|...............+.|+..++ .|+++++
T Consensus 210 ~~~~~~lv~~~~~~--~~~~~~~~~~~~~--~~i~givlnk~d~~~~~g~~~~~~~~~~~pi~~i~--~g~~~~d 278 (295)
T 1ls1_A 210 GPDEVLLVLDAMTG--QEALSVARAFDEK--VGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAG--VSEKPEG 278 (295)
T ss_dssp CCSEEEEEEEGGGT--HHHHHHHHHHHHH--TCCCEEEEECGGGCSSCHHHHHHHHHHCCCEEEEC--------C
T ss_pred CCCEEEEEEeCCCc--HHHHHHHHHHhhc--CCCCEEEEECCCCCccHHHHHHHHHHHCcCEEEEe--CCCCccc
Confidence 57888999997732 2222223333322 12345789999976533221222234577887775 4555554
No 246
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.54 E-value=0.00025 Score=68.84 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=53.7
Q ss_pred hccccEEEEEEeCCCCCChhHHHHHHHH---HHhCCCCeEEEEEeCccCCCcccch---h--HHHhhCCCceEEEecCCC
Q 016883 270 IEESCVIIFLVDGQAGLTAADEEIADWL---RKNYMDKFIILAVNKCESPRKGIMQ---V--SEFWSLGFSPLPISAISG 341 (381)
Q Consensus 270 l~~~d~ii~VvD~~~~~~~~~~~~~~~l---~~~~~~~p~ivV~NK~Dl~~~~~~~---~--~~~~~~~~~~~~vSA~~g 341 (381)
+.++|.+++|.. ..+..... .+-+++ ... ++|.++|+||+|+.++...+ . ..+...+++++.+||++|
T Consensus 128 ~anvD~v~iv~a-~~P~~~~~-~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 128 AANIDQIVIVSA-ILPELSLN-IIDRYLVGCETL--QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp EECCCEEEEEEE-STTTCCHH-HHHHHHHHHHHH--TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred HhcCCEEEEEEe-CCCCCCHH-HHHHHHHHHHhc--CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 578999997754 44443332 232333 233 88999999999998764311 1 123456889999999999
Q ss_pred CCHHHHHHHH
Q 016883 342 TGTGELLDLV 351 (381)
Q Consensus 342 ~gi~~l~~~i 351 (381)
.|+++|...+
T Consensus 204 ~gl~~L~~~~ 213 (358)
T 2rcn_A 204 DGLKPLEEAL 213 (358)
T ss_dssp BTHHHHHHHH
T ss_pred cCHHHHHHhc
Confidence 9999988754
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.32 E-value=4.4e-05 Score=67.99 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=41.2
Q ss_pred CCCCCEEEEEcCCCCChhHHHHHHhCCCc-ccccCCCCcccccceeeEEeCCceEEEEEcCCCC
Q 016883 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNR-AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222 (381)
Q Consensus 160 ~~~~~~v~l~G~~gvGKSSLin~L~~~~~-~~~~~~~~tt~~~~~~~~~~~~~~~~liDTPG~~ 222 (381)
......++++|++|+|||||+++|.+... ......+.||+....+. .+|..+.++|...+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~ 77 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMT 77 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhh
Confidence 33345789999999999999999986542 23445566777665443 345556666665543
No 248
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.16 E-value=0.002 Score=56.28 Aligned_cols=51 Identities=10% Similarity=-0.104 Sum_probs=35.5
Q ss_pred HHHHhccccEEEEEEeCCCCCChhHHHHHHHHHHh---CCCCeEEEEEeCccCCC
Q 016883 266 ATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN---YMDKFIILAVNKCESPR 317 (381)
Q Consensus 266 ~~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~---~~~~p~ivV~NK~Dl~~ 317 (381)
+...+..+|.+++++..+..- ..-..+++.+.+. ..+.++.+|+|++|...
T Consensus 91 ~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 91 TSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp HHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred HHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 345567799999999987544 4445666666653 12467899999999643
No 249
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.00 E-value=0.0065 Score=58.89 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.-.++++|++|+||||+++.|.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 347899999999999999998764
No 250
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.93 E-value=0.0045 Score=58.56 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.-.++++|++|+||||+++.|.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 347899999999999999998764
No 251
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.53 E-value=0.00093 Score=57.88 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999999874
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.44 E-value=0.00077 Score=59.32 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=27.1
Q ss_pred EEEEcCCCCChhHHHHHHhCCCc-ccccCCCCcccccce
Q 016883 166 VAIVGRPNVGKSALFNRLVGGNR-AIVVDEPGVTRDRMY 203 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~~~-~~~~~~~~tt~~~~~ 203 (381)
|+++|++||||+||+++|+.... ...-..++||+....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~ 42 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRA 42 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCC
Confidence 68999999999999999985431 123345667765543
No 253
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.32 E-value=0.009 Score=59.52 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHh
Q 016883 163 LPRVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~ 184 (381)
...|.++|..++|||+|+|.|+
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 4478899999999999999664
No 254
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.10 E-value=0.0021 Score=56.61 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999999864
No 255
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.06 E-value=0.0028 Score=55.16 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
+++++|++|+|||||++.|.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998753
No 256
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.90 E-value=0.0042 Score=55.18 Aligned_cols=50 Identities=10% Similarity=-0.080 Sum_probs=32.4
Q ss_pred HHHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 267 TAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 267 ~~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
...+..+|.+++++..+..-...-..+++.+.+. .+.++.+|+|++|...
T Consensus 85 ~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 85 EALADGCDLLVIPSTPDALALDALMLTIETLQKL-GNNRFRILLTIIPPYP 134 (209)
T ss_dssp HHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHT-CSSSEEEEECSBCCTT
T ss_pred HHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhc-cCCCEEEEEEecCCcc
Confidence 3456789999999987632111223455555552 1567889999999764
No 257
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.90 E-value=0.0049 Score=54.61 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
..++++|++|+|||||++.|.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 378999999999999999998764
No 258
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.89 E-value=0.00088 Score=67.29 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...|+++|.+|+||||+.+.|...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998754
No 259
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.86 E-value=0.0036 Score=55.37 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999998753
No 260
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.81 E-value=0.0035 Score=54.41 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999998653
No 261
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.77 E-value=0.0041 Score=54.34 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 7899999999999999999874
No 262
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.75 E-value=0.038 Score=51.63 Aligned_cols=47 Identities=6% Similarity=0.046 Sum_probs=28.2
Q ss_pred HhccccEEEEEEeCCCCCChhHHHHHHHHHHh--CCCCeEE-EEEeCccC
Q 016883 269 AIEESCVIIFLVDGQAGLTAADEEIADWLRKN--YMDKFII-LAVNKCES 315 (381)
Q Consensus 269 ~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~--~~~~p~i-vV~NK~Dl 315 (381)
.+..+|.+++|+..+..-...-..+++.+.+. ..+.+++ +|+|+++.
T Consensus 176 ~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 176 PLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp GGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred HHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 45679999999987631111123345555542 1245554 89999984
No 263
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.71 E-value=0.0041 Score=55.67 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999874
No 264
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.70 E-value=0.0055 Score=52.91 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999875
No 265
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.69 E-value=0.0042 Score=55.91 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 78999999999999999998754
No 266
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.64 E-value=0.0058 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 78999999999999999999864
No 267
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.57 E-value=0.0062 Score=54.88 Aligned_cols=23 Identities=35% Similarity=0.336 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 268
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.53 E-value=0.0054 Score=54.20 Aligned_cols=24 Identities=42% Similarity=0.515 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
..++++|++|+|||||++.|.+..
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 388999999999999999998753
No 269
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.39 E-value=0.0079 Score=51.53 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.++++|++|+|||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 789999999999999998654
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.38 E-value=0.0081 Score=54.63 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 271
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.37 E-value=0.0082 Score=54.75 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 272
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.32 E-value=0.0084 Score=55.39 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 273
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.31 E-value=0.0087 Score=55.09 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 274
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.31 E-value=0.0085 Score=55.84 Aligned_cols=23 Identities=43% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999999999864
No 275
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.30 E-value=0.0087 Score=54.56 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 276
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.30 E-value=0.0086 Score=55.49 Aligned_cols=23 Identities=43% Similarity=0.534 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 78999999999999999999864
No 277
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.30 E-value=0.0088 Score=54.75 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 278
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.26 E-value=0.0082 Score=51.13 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|+.|+|||||++.|.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999999999998754
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.25 E-value=0.0094 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 280
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.24 E-value=0.0089 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999999864
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.21 E-value=0.008 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..++++|++|+|||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998874
No 282
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.21 E-value=0.0098 Score=54.15 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 283
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.19 E-value=0.0098 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 78999999999999999999864
No 284
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.17 E-value=0.01 Score=54.30 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.|.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999995
No 285
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.14 E-value=0.01 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 78999999999999999999864
No 286
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.14 E-value=0.01 Score=54.62 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 287
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.13 E-value=0.011 Score=54.36 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999875
No 288
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.11 E-value=0.011 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.640 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..++++|++|+||||+.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999754
No 289
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.11 E-value=0.012 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+||||+++.|.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 78999999999999999998753
No 290
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.11 E-value=0.011 Score=54.77 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.|.|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999985
No 291
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.10 E-value=0.011 Score=54.96 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 292
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.08 E-value=0.0087 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.049 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999886
No 293
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.08 E-value=0.011 Score=51.25 Aligned_cols=24 Identities=25% Similarity=0.565 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.+.++++|++|+|||||+++|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 458899999999999999999864
No 294
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.08 E-value=0.011 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999864
No 295
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.05 E-value=0.018 Score=51.51 Aligned_cols=46 Identities=11% Similarity=0.058 Sum_probs=27.6
Q ss_pred HHhccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEEEEEeCcc
Q 016883 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCE 314 (381)
Q Consensus 268 ~~l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~ivV~NK~D 314 (381)
..+..+|.+++|+..+..-...-..+.+.+.+. ....+.+|+||++
T Consensus 149 ~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 149 GTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDL-GIKKVRYVINKVR 194 (254)
T ss_dssp HHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHH-TCSCEEEEEEEEC
T ss_pred HHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHc-CCccEEEEEeCCC
Confidence 345789999999987631111112334444443 2356789999998
No 296
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.03 E-value=0.01 Score=50.30 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.|+++|++|+||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 297
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.02 E-value=0.012 Score=51.56 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...++++|++|+||||+++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999998753
No 298
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.01 E-value=0.012 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999864
No 299
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.97 E-value=0.011 Score=51.06 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.++++|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 300
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.97 E-value=0.014 Score=49.18 Aligned_cols=22 Identities=18% Similarity=0.123 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.|+++|.+|+||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
No 301
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.96 E-value=0.012 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 302
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.90 E-value=0.014 Score=48.88 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhHHHHHH
Q 016883 165 RVAIVGRPNVGKSALFNRL 183 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L 183 (381)
.|+++|++|+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.90 E-value=0.0097 Score=53.34 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=15.6
Q ss_pred CEEEEEcCCCCChhHHHHHHh-CC
Q 016883 164 PRVAIVGRPNVGKSALFNRLV-GG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~-~~ 186 (381)
..++++|++|+|||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 378999999999999999999 65
No 304
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.87 E-value=0.016 Score=52.39 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCChhHHHHHHh
Q 016883 164 PRVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~ 184 (381)
..++++|++|+|||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 305
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.87 E-value=0.012 Score=54.39 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 7899999999999999999874
No 306
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.77 E-value=0.012 Score=51.73 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
+++++|++|+|||||++.|.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 67999999999999999988753
No 307
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.74 E-value=0.013 Score=55.55 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 8899999999999999998853
No 308
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.73 E-value=0.016 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 309
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.68 E-value=0.011 Score=56.01 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 88999999999999999998864
No 310
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.68 E-value=0.017 Score=49.10 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..++++|++|+||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999999998865
No 311
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.59 E-value=0.017 Score=54.17 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 78999999999999999999864
No 312
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.59 E-value=0.017 Score=55.86 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 78999999999999999999864
No 313
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.55 E-value=0.0087 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999875
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.48 E-value=0.017 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.|+++|++|+||||+.+.|.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998764
No 315
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.47 E-value=0.019 Score=50.16 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
+|+++|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 789999999999999999976
No 316
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.47 E-value=0.019 Score=55.64 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 78999999999999999999864
No 317
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.45 E-value=0.017 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.+++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999873
No 318
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.44 E-value=0.019 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..|+++|++|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999988753
No 319
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.43 E-value=0.024 Score=48.20 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.|+++|.+|+||||+.+.|...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999998753
No 320
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.43 E-value=0.02 Score=55.32 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999864
No 321
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.42 E-value=0.023 Score=49.57 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...|+++|.+|+||||+.+.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999988653
No 322
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.42 E-value=0.017 Score=54.84 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...++++|++|+|||||++.|.+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhh
Confidence 348899999999999999998875
No 323
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.40 E-value=0.02 Score=48.50 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.|+++|.+|+||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999975
No 324
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.40 E-value=0.029 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...|+++|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988754
No 325
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.37 E-value=0.021 Score=55.26 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 78999999999999999999864
No 326
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.34 E-value=0.04 Score=52.47 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCC
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++.++++|++|+|||||++.|.+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999988653
No 327
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.32 E-value=0.022 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 78999999999999999999864
No 328
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.32 E-value=0.022 Score=55.61 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 78999999999999999999865
No 329
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.31 E-value=0.022 Score=49.83 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.|+++|++|+||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 330
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.30 E-value=0.022 Score=50.96 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 016883 165 RVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~ 184 (381)
.++++|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 78999999999999999887
No 331
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.29 E-value=0.027 Score=49.19 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...|+++|++|+||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34899999999999999999874
No 332
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.27 E-value=0.023 Score=55.31 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 78999999999999999999864
No 333
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.21 E-value=0.023 Score=55.20 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.|-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 78999999999999999999864
No 334
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.17 E-value=0.023 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.|++.|.+|+||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 335
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.14 E-value=0.03 Score=48.29 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.+.++++|++|+|||||+++|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 458899999999999999998764
No 336
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.09 E-value=0.019 Score=49.20 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++++.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998865
No 337
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.09 E-value=0.023 Score=51.50 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..|+++|++|+|||||++.|.+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998763
No 338
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.08 E-value=0.017 Score=54.81 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.+.++++|++|+|||||+|.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 347899999999999999999965
No 339
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.08 E-value=0.033 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...|+++|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999875
No 340
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.08 E-value=0.029 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..|+++|.+|+||||+.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999875
No 341
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.06 E-value=0.023 Score=54.98 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 78999999999999999999863
No 342
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.01 E-value=0.03 Score=48.44 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.|+++|.+|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999875
No 343
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.01 E-value=0.01 Score=50.27 Aligned_cols=54 Identities=6% Similarity=-0.088 Sum_probs=30.7
Q ss_pred CCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHHHHHHHHHhhhhh
Q 016883 67 PSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALEREAKDAVREYSSLL 128 (381)
Q Consensus 67 ~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~~~~~l~~~~~~l 128 (381)
+..|+++|+||+|+........+ +.. +.....+...+.+|+.++++ +.+.+..+
T Consensus 110 ~~~p~ilv~nK~Dl~~~~~~~~~--~~~---~~~~~~~~~~~~~Sa~~~~~---v~~l~~~l 163 (181)
T 3t5g_A 110 VQIPIMLVGNKKDLHMERVISYE--EGK---ALAESWNAAFLESSAKENQT---AVDVFRRI 163 (181)
T ss_dssp --CCEEEEEECTTCTTTCCSCHH--HHH---HHHHHTTCEEEECCTTSHHH---HHHHHHHH
T ss_pred CCCCEEEEEECccchhcceecHH--HHH---HHHHHhCCcEEEEecCCCCC---HHHHHHHH
Confidence 35899999999998643322111 111 11222344677889999888 44444444
No 344
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.00 E-value=0.031 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..|++.|.+|+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999865
No 345
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.99 E-value=0.038 Score=47.18 Aligned_cols=23 Identities=39% Similarity=0.736 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...|+++|.+|+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34789999999999999999874
No 346
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.98 E-value=0.02 Score=55.29 Aligned_cols=24 Identities=42% Similarity=0.511 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
-+++++|++|+|||||++.|.+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 388999999999999999998753
No 347
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.95 E-value=0.028 Score=55.02 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 78999999999999999999864
No 348
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.95 E-value=0.03 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..|+++|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999864
No 349
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.91 E-value=0.035 Score=47.50 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..|+++|++|+||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
No 350
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.91 E-value=0.02 Score=55.14 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 78999999999999999999864
No 351
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.90 E-value=0.024 Score=54.74 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++++++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999864
No 352
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.90 E-value=0.023 Score=47.65 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999875
No 353
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.88 E-value=0.025 Score=53.99 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999753
No 354
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.81 E-value=0.044 Score=47.69 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhC
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
....|+++|.+|+||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998864
No 355
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.70 E-value=0.045 Score=47.64 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.2
Q ss_pred CCCCEEEEEcCCCCChhHHHHHHhC
Q 016883 161 HLLPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 161 ~~~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
.....|+++|.+|+||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455899999999999999998874
No 356
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.69 E-value=0.03 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.239 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..|+++|++|+|||||++.|.+.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998864
No 357
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.64 E-value=0.033 Score=48.80 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..++++|.+|+||||+++.|.+
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999875
No 358
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.64 E-value=0.019 Score=55.37 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999864
No 359
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.61 E-value=0.039 Score=48.50 Aligned_cols=21 Identities=19% Similarity=0.553 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
+|+++|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 360
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.60 E-value=0.045 Score=49.92 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCChhHHHHHHh
Q 016883 164 PRVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~ 184 (381)
..|+++|++|+||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 361
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.52 E-value=0.035 Score=51.99 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...|+++|++|+|||||.+.|.+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988754
No 362
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.51 E-value=0.037 Score=47.28 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
..+++|++|+|||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999864
No 363
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.51 E-value=0.04 Score=47.09 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.|+++|.+|+||||+.+.|..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999874
No 364
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.48 E-value=0.031 Score=54.23 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.|.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999999864
No 365
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.48 E-value=0.042 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...++++|+||+||||+.+.|..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34789999999999999999964
No 366
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.46 E-value=0.048 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..|+++|.+|+||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998864
No 367
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.42 E-value=0.044 Score=48.23 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
+|+++|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 368
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.41 E-value=0.051 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..|+++|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
No 369
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.35 E-value=0.046 Score=48.46 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...|+|+|++|+||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999988743
No 370
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.34 E-value=0.044 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...|+++|.+|+||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999998764
No 371
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.33 E-value=0.14 Score=50.38 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCChhHHHHHHhCC
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
....|+++|.+|+||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3567899999999999999998753
No 372
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.29 E-value=0.052 Score=48.01 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...|+++|.+|+||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998865
No 373
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.29 E-value=0.053 Score=46.99 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..|+++|.+|+||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 374
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.29 E-value=0.048 Score=48.53 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...|+++|.+|+||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999874
No 375
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.28 E-value=0.034 Score=51.49 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
-++++|++|+|||||++++.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3899999999999999999874
No 376
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.25 E-value=0.056 Score=47.15 Aligned_cols=24 Identities=25% Similarity=0.092 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...|+++|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 348999999999999999998753
No 377
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.17 E-value=0.047 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.|++.|.+|+||||+.+.|...
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999998753
No 378
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.16 E-value=0.037 Score=50.08 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
-++++|++|+|||||++++.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 379
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.15 E-value=0.043 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..+++.|..|+||||+++.|.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999998764
No 380
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.05 E-value=0.026 Score=49.40 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.|+|+|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5799999999999999998754
No 381
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.04 E-value=0.042 Score=55.68 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||+++|++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999875
No 382
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.02 E-value=0.05 Score=46.23 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
+|+++|++|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 383
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.97 E-value=0.051 Score=46.50 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..|+++|.+|+||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998864
No 384
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.95 E-value=0.059 Score=46.42 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..|+++|.+|+||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988653
No 385
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.93 E-value=0.043 Score=54.18 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++++++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999864
No 386
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.85 E-value=0.069 Score=45.80 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..|+++|.+|+||||+.+.|...
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999998754
No 387
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.85 E-value=0.062 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.185 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.|++.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 388
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.84 E-value=0.062 Score=45.03 Aligned_cols=21 Identities=29% Similarity=0.312 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
+|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 389
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.82 E-value=0.059 Score=45.35 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.|+++|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 390
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.81 E-value=0.053 Score=55.27 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 391
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.80 E-value=0.063 Score=45.93 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 392
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.79 E-value=0.051 Score=46.21 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=15.8
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..|+++|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999864
No 393
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.78 E-value=0.071 Score=44.88 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988764
No 394
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.73 E-value=0.063 Score=47.29 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
+|+++|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 395
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.67 E-value=0.043 Score=54.87 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
+++++|++|+|||||++.|++-.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 78999999999999999998864
No 396
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.66 E-value=0.062 Score=48.66 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..+|+++|++|+||||+.+.|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44899999999999999999864
No 397
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.64 E-value=0.065 Score=45.66 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.|+++|.+|+||||+.+.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998763
No 398
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.62 E-value=0.062 Score=45.90 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.|+++|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 399
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.59 E-value=0.06 Score=47.33 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7789999999999999998843
No 400
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.56 E-value=0.062 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999999875
No 401
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.48 E-value=0.06 Score=55.35 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 88999999999999999999864
No 402
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.44 E-value=0.069 Score=47.07 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999865
No 403
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.39 E-value=0.025 Score=48.31 Aligned_cols=69 Identities=12% Similarity=0.055 Sum_probs=36.5
Q ss_pred ccccccccccCCCCchHHHHhhhcC-----CCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhHH
Q 016883 42 QLLSLSLHKHYPLPLPLTRHLRSLS-----PSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALERE 116 (381)
Q Consensus 42 ~~~~~~~~~~~~~~~~l~~~l~~~~-----~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~~ 116 (381)
-++++....+. ...++..|+.... ...|+++|+||+|+...... ..+.. +.....+...+.+|+.++.
T Consensus 91 ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~---~~~~~---~~~~~~~~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 91 VILVYDVTRRD-TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD---RNEGL---KFARKHSMLFIEASAKTCD 163 (195)
T ss_dssp EEEEEETTCHH-HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSC---HHHHH---HHHHHTTCEEEECCTTTCT
T ss_pred EEEEEECcCHH-HHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccC---HHHHH---HHHHHcCCEEEEecCCCCC
Confidence 35555554432 1234455554443 35789999999998432111 00111 1112233456778888877
Q ss_pred H
Q 016883 117 A 117 (381)
Q Consensus 117 ~ 117 (381)
+
T Consensus 164 g 164 (195)
T 1x3s_A 164 G 164 (195)
T ss_dssp T
T ss_pred C
Confidence 7
No 404
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.37 E-value=0.065 Score=54.67 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNR 188 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~ 188 (381)
.++++|++|+|||||++.|.|...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 689999999999999999998643
No 405
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.37 E-value=0.056 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
-.++++|++|+|||||++.|.+-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 37899999999999999998764
No 406
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.37 E-value=0.055 Score=49.81 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
-++++|++|+|||||++++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4899999999999999999864
No 407
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.31 E-value=0.29 Score=48.83 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..++++|+||+|||++++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988764
No 408
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.31 E-value=0.056 Score=51.40 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6799999999999999998864
No 409
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.30 E-value=0.064 Score=55.10 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 410
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.30 E-value=0.058 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
+++++|++|+|||||++.|.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 88999999999999999998763
No 411
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.30 E-value=0.071 Score=48.36 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...|++.|.+|+||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998865
No 412
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.25 E-value=0.06 Score=55.50 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 88999999999999999999864
No 413
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.25 E-value=0.088 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNR 188 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~ 188 (381)
.++++|++|+|||||++.|.|-..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 789999999999999999998753
No 414
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.21 E-value=0.058 Score=49.10 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...++++|++|+||||+.+.|...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999998753
No 415
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.17 E-value=0.059 Score=50.04 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||++.+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7899999999999999988764
No 416
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.15 E-value=0.071 Score=47.16 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 417
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.13 E-value=0.094 Score=47.46 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..+++.|++|+|||||++++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 418
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.11 E-value=0.066 Score=55.25 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 88999999999999999999864
No 419
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.09 E-value=0.08 Score=44.28 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 016883 165 RVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~ 184 (381)
..+++|+.|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999976
No 420
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.05 E-value=0.086 Score=46.92 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 421
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.03 E-value=0.1 Score=46.69 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...|+|+|.+|+||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988643
No 422
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.96 E-value=0.077 Score=54.93 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 78999999999999999999864
No 423
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.92 E-value=0.085 Score=48.12 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 5789999999999999998753
No 424
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.87 E-value=0.97 Score=44.70 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
+.-|++.|+||+|||+|..++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347899999999999999999864
No 425
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.78 E-value=0.058 Score=55.40 Aligned_cols=23 Identities=39% Similarity=0.364 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 88999999999999999998864
No 426
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.77 E-value=0.072 Score=52.90 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
+++++|++|+|||||++.|.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 88999999999999999998753
No 427
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.75 E-value=0.87 Score=42.39 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=26.9
Q ss_pred cEEEEEEeCCCCCC-hhH-HHHHHHHHHhCCCCeEEEEEeCccCCC
Q 016883 274 CVIIFLVDGQAGLT-AAD-EEIADWLRKNYMDKFIILAVNKCESPR 317 (381)
Q Consensus 274 d~ii~VvD~~~~~~-~~~-~~~~~~l~~~~~~~p~ivV~NK~Dl~~ 317 (381)
...++++|--+.++ ... ..++..+...-.+..+|+..|..+...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~ 150 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGII 150 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSC
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccC
Confidence 56777888666665 333 334455554334677888888876443
No 428
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.72 E-value=0.11 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999864
No 429
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.64 E-value=0.084 Score=50.99 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 016883 165 RVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~ 184 (381)
.++++|++|+|||||+++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999987
No 430
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.61 E-value=0.072 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 88999999999999999998864
No 431
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.61 E-value=0.098 Score=48.50 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCCChhHHHHHHh
Q 016883 162 LLPRVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 162 ~~~~v~l~G~~gvGKSSLin~L~ 184 (381)
....|+++|.+|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35589999999999999999987
No 432
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.59 E-value=0.086 Score=48.23 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.|+++|++|+||||+.+.|.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998865
No 433
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.55 E-value=0.1 Score=45.58 Aligned_cols=21 Identities=19% Similarity=0.066 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.++++|++|+|||||+..+.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999986
No 434
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.54 E-value=0.089 Score=44.26 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..+++.|++|+|||+++..+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36799999999999999988754
No 435
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.53 E-value=0.12 Score=45.61 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..+++.|++|+|||+|+..+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988754
No 436
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.52 E-value=0.086 Score=46.84 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||||+..+++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7899999999999999999874
No 437
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.48 E-value=0.13 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
-.++++|+.|+|||||++.|.|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999875
No 438
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.48 E-value=0.11 Score=46.95 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...+++.|++|+||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998873
No 439
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.41 E-value=0.11 Score=43.60 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
.-.|+++|.+|+||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 34889999999999999998864
No 440
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.23 E-value=0.12 Score=45.50 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.|+++|.+|+||||+.+.|...
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999988754
No 441
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.21 E-value=0.13 Score=44.54 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..+++.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988754
No 442
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.10 E-value=0.18 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...+++.|++|+|||+++.++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999875
No 443
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.08 E-value=0.15 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.++++|++|+|||||++.|.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
No 444
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.04 E-value=0.12 Score=50.32 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...++++|++|+|||||++.|.+.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999998853
No 445
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.95 E-value=0.15 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..|+++|+||+||+|....|...
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35678899999999999888754
No 446
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.89 E-value=0.14 Score=45.39 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
+|+++|+||+||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999988754
No 447
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.86 E-value=0.12 Score=46.45 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..|++.|.+|+||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999998754
No 448
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.85 E-value=1.3 Score=40.00 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=32.0
Q ss_pred HHHHhccccEEEEEEeCCCCCChhH-HHHHHHHHHhCCCCeEEEEEeCcc
Q 016883 266 ATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCE 314 (381)
Q Consensus 266 ~~~~l~~~d~ii~VvD~~~~~~~~~-~~~~~~l~~~~~~~p~ivV~NK~D 314 (381)
+...+..+|.+++|+..+. ..... ..+++.+.+...+.++.+|+|+++
T Consensus 160 ~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 160 LKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp HHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred HHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 3455677999999998863 22222 345556655434567889999994
No 449
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.72 E-value=0.12 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCCc
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGNR 188 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~~ 188 (381)
.++++|++|+|||||++.|.|-..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 579999999999999999998753
No 450
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.47 E-value=0.16 Score=43.85 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998865
No 451
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.33 E-value=0.15 Score=47.24 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.|+++|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 452
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.32 E-value=0.12 Score=48.23 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=17.2
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...|++.|.+|+||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998764
No 453
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.23 E-value=0.19 Score=44.88 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...|+++|.+|+||||+.+.|..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 454
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.23 E-value=0.16 Score=44.35 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...|+++|.+|+||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988753
No 455
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.20 E-value=0.15 Score=43.89 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.+++.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988753
No 456
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.13 E-value=0.15 Score=44.38 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.+++.|++|+|||+|+..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988753
No 457
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.05 E-value=0.023 Score=51.38 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.2
Q ss_pred EEEEcCCCCChhHHHHHHhCCC
Q 016883 166 VAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 166 v~l~G~~gvGKSSLin~L~~~~ 187 (381)
++++|++|+|||||++++.+-.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4789999999999999998753
No 458
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.95 E-value=0.2 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..+++.|++|+|||+|++++...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 36899999999999999998753
No 459
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.91 E-value=0.17 Score=47.85 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.+++.|++|+||||+++.+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999988763
No 460
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.90 E-value=0.18 Score=44.70 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.|+++|++|+|||+|...|...-
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 68999999999999999998653
No 461
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.88 E-value=0.2 Score=46.64 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
+.-+++.|+||+|||+|..++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346777899999999999998753
No 462
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.85 E-value=0.12 Score=58.24 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
+|+++|++|+|||||++.|.+-.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 89999999999999999998753
No 463
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.79 E-value=0.15 Score=46.92 Aligned_cols=21 Identities=33% Similarity=0.284 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.++++|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999998876
No 464
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.77 E-value=0.22 Score=46.02 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...+++.|++|+|||++..++...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999877653
No 465
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.74 E-value=0.17 Score=44.44 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 016883 165 RVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~ 184 (381)
..+++|+.|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 66899999999999999875
No 466
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.72 E-value=0.21 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..+++.|++|+|||++++++...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 467
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.41 E-value=1.8 Score=42.28 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.-|++.|+||+|||+|..++.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 468
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.35 E-value=0.84 Score=41.89 Aligned_cols=46 Identities=4% Similarity=0.171 Sum_probs=30.2
Q ss_pred hccccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEE-EEEeCccCCC
Q 016883 270 IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII-LAVNKCESPR 317 (381)
Q Consensus 270 l~~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~i-vV~NK~Dl~~ 317 (381)
...+|.+++|+.........-...++.+.+. +.+++ +|+|++|...
T Consensus 212 ~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~--~~~~~GvVlN~~~~~~ 258 (271)
T 3bfv_A 212 SKFTGNVVYVVNSENNNKDEVKKGKELIEAT--GAKLLGVVLNRMPKDK 258 (271)
T ss_dssp HHHHCEEEEEEETTSCCHHHHHHHHHHHHTT--TCEEEEEEEEEECC--
T ss_pred HHHCCEEEEEEeCCCCcHHHHHHHHHHHHhC--CCCEEEEEEeCCcCCC
Confidence 3568999999998753333334555666654 66665 8899998643
No 469
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.22 E-value=1 Score=48.25 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|++|+|||+++..+...
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHH
Confidence 5799999999999999998864
No 470
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.14 E-value=0.21 Score=47.51 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.+++.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 471
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.13 E-value=0.21 Score=41.11 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.|++.|++|+|||++..++...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999998754
No 472
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.87 E-value=0.26 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..+++.|++|+|||+|++++...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 36899999999999999998864
No 473
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.83 E-value=0.13 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++++|.+|+|||||++.|.+.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 7899999999999999999875
No 474
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.77 E-value=0.98 Score=47.60 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...++++|++|+|||+++..+...
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 347899999999999999998764
No 475
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.77 E-value=0.13 Score=56.10 Aligned_cols=24 Identities=42% Similarity=0.671 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
-.++++|++|+|||||++.|.|..
T Consensus 700 eivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 700 SRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp CEEEECSCCCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999864
No 476
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.71 E-value=0.25 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..+++.|++|+|||||++.+.+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998864
No 477
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=88.70 E-value=0.39 Score=45.14 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...+++.|++|+|||+|..++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 347899999999999999998753
No 478
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=88.69 E-value=0.15 Score=53.25 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=18.2
Q ss_pred CEEEEEcCCCCChhHHHHHHh
Q 016883 164 PRVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~ 184 (381)
-.++++|++|+|||||++.+.
T Consensus 349 e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 349 TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp SEEEEECSTTSSHHHHHTTTH
T ss_pred CEEEEEeeCCCCHHHHHHHHH
Confidence 378999999999999998653
No 479
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.62 E-value=0.22 Score=44.13 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.5
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 016883 165 RVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~ 184 (381)
.++++|++|+|||||+..++
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 77999999999999977664
No 480
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.62 E-value=0.16 Score=46.26 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
...|+|.|..|+||||+.+.|...
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458899999999999999988754
No 481
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.53 E-value=0.22 Score=46.66 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.+++.|++|+|||+|++++...
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6789999999999999998764
No 482
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=88.52 E-value=0.98 Score=40.84 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=28.2
Q ss_pred cccEEEEEEeCCCCCChhHHHHHHHHHHhCCCCeEE-EEEeCccC
Q 016883 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII-LAVNKCES 315 (381)
Q Consensus 272 ~~d~ii~VvD~~~~~~~~~~~~~~~l~~~~~~~p~i-vV~NK~Dl 315 (381)
.+|.+++|+.........-..+++.+++. +.+++ +|+|+.|.
T Consensus 152 ~aD~viiv~~~~~~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 152 KPTGVVVVSTPQELTAVIVEKAINMAEET--NTSVLGLVENMSYF 194 (262)
T ss_dssp CCSEEEEEECSSSCCHHHHHHHHHHHHTT--TCCEEEEEETTCCE
T ss_pred cCCeEEEEecCccchHHHHHHHHHHHHhC--CCCEEEEEECCCcc
Confidence 68999999887643222224455666554 66776 89999984
No 483
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.47 E-value=0.26 Score=45.54 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.+++.|++|+|||++..++...
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 6899999999999999988764
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.40 E-value=0.25 Score=44.28 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.|++.|..|+||||+++.|...
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 485
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.30 E-value=0.22 Score=56.24 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
+++++|++|+|||||++.|.+..
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSS
T ss_pred EEEEEecCCCcHHHHHHHhcccc
Confidence 88999999999999999999864
No 486
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.23 E-value=0.36 Score=48.66 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
-++++|++|+|||+|++++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 487
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.19 E-value=1.9 Score=45.96 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCChhHHHHHHhCC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
+.-|++.|+||+|||+|.+++...
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999875
No 488
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.15 E-value=0.29 Score=45.01 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCChhHHHHHHhC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~ 185 (381)
..+++.|++|+|||+++.++..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 489
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=88.09 E-value=0.26 Score=47.52 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=19.2
Q ss_pred CCEEEEEcCCCCChhHHHHHH
Q 016883 163 LPRVAIVGRPNVGKSALFNRL 183 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L 183 (381)
..+++++|.+|+|||||+..+
T Consensus 33 ~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 33 LVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred ccEEEEECCCCCcHHHHHHHH
Confidence 569999999999999999876
No 490
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.03 E-value=0.25 Score=46.65 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
.++|.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999999998764
No 491
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=87.96 E-value=0.36 Score=41.41 Aligned_cols=80 Identities=6% Similarity=-0.036 Sum_probs=37.8
Q ss_pred ccccccccccccCCCCchHHHHhhhc---C-CCCceeEcccCCCCCCCCCCCccccccccccccccCCCCCccchhHhhH
Q 016883 40 SPQLLSLSLHKHYPLPLPLTRHLRSL---S-PSNDAVSSSNDDAFEDSPFEDEDDDAEYEDVDDESDGQDFGIDVDALER 115 (381)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~l~~~l~~~---~-~~~~~viv~NK~Dl~~~~~~~e~~~~~~~~~~~~~~~~~~~i~~sa~~~ 115 (381)
.--++++.+..+. .-..+..|+... . ...|+++|+||+|+........+ +........+.+.+.+|+.++
T Consensus 107 d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~-----~~~~~~~~~~~~~~~vSA~~g 180 (199)
T 3l0i_B 107 HGIIVVYDVTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT-----TAKEFADSLGIPFLETSAKNA 180 (199)
T ss_dssp SEEEECC-CCCSH-HHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSC-----C-CHHHHTTTCCBCCCCC---
T ss_pred CEEEEEEECCCHH-HHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHH-----HHHHHHHHcCCeEEEEECCCC
Confidence 3345555555422 113345554433 2 25899999999999644322111 111222233456788899988
Q ss_pred HHHHHHHHhhhhh
Q 016883 116 EAKDAVREYSSLL 128 (381)
Q Consensus 116 ~~~~~l~~~~~~l 128 (381)
++ +.+.+..+
T Consensus 181 ~g---v~~l~~~l 190 (199)
T 3l0i_B 181 TN---VEQSFMTM 190 (199)
T ss_dssp HH---HHHHHHHH
T ss_pred CC---HHHHHHHH
Confidence 88 44444444
No 492
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.91 E-value=0.23 Score=46.87 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 016883 165 RVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~ 184 (381)
..+++|+.|+|||||+.++.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 77999999999999999987
No 493
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.90 E-value=0.31 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
.|+|+|++|+|||||...|....
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC
Confidence 78999999999999999998763
No 494
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=87.89 E-value=0.22 Score=55.99 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCChhHHHHHHhCCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
-+++++|++|+|||||++.|.+..
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 388999999999999999998864
No 495
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=87.88 E-value=0.097 Score=50.93 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhHHHHHHh
Q 016883 165 RVAIVGRPNVGKSALFNRLV 184 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~ 184 (381)
.++++|++|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999998874
No 496
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.87 E-value=0.46 Score=44.80 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCChhHHHHHHhCC
Q 016883 164 PRVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 164 ~~v~l~G~~gvGKSSLin~L~~~ 186 (381)
..+++.|++|+|||+|..++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 47899999999999999998753
No 497
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.86 E-value=0.29 Score=47.19 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCChhHHHHHHhC
Q 016883 163 LPRVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 163 ~~~v~l~G~~gvGKSSLin~L~~ 185 (381)
...++++|++|+||||+...|.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 34789999999999999987765
No 498
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.84 E-value=0.2 Score=44.56 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChhHHHHHHhC
Q 016883 165 RVAIVGRPNVGKSALFNRLVG 185 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~ 185 (381)
.+++.|+||+||||+..+|..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999877764
No 499
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.82 E-value=0.28 Score=42.49 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGG 186 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~ 186 (381)
-|++.|++|+||||+.-.|...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 6799999999999999988764
No 500
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=87.71 E-value=0.26 Score=46.68 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhCCC
Q 016883 165 RVAIVGRPNVGKSALFNRLVGGN 187 (381)
Q Consensus 165 ~v~l~G~~gvGKSSLin~L~~~~ 187 (381)
-++++|++|+||||+.+.|....
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEEeCCCCCHHHHHHHHHhcC
Confidence 68999999999999999998753
Done!