Your job contains 1 sequence.
>016887
MGRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQM
KQVWNWFQNRRYAIRAKSIKSPGKLNVTPLARDDSTPGRNVPQPVAAPIPIPMSASVPPT
MPASANVPSVSTAGRAASESTFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAG
FGAEEDEWVNIKRHVRQRSLPCEASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRR
HDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHAMNDSVMVDHQKTSADLS
ASTATRVTVSSAEMMHKQVNANIAQGAPLSHSFVSVPAQTVEPKNASASSGISSSNPAVP
PGGAAVISGTAATTAATGHPS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016887
(381 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2095077 - symbol:SHH2 "SAWADEE homeodomain hom... 968 2.0e-97 1
TAIR|locus:1005716727 - symbol:SHH1 "AT1G15215" species:3... 412 1.6e-38 1
>TAIR|locus:2095077 [details] [associations]
symbol:SHH2 "SAWADEE homeodomain homolog 2" species:3702
"Arabidopsis thaliana" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043565 "sequence-specific DNA
binding" evidence=IEA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] InterPro:IPR001356
InterPro:IPR009057 SMART:SM00389 EMBL:CP002686 GO:GO:0043565
GO:GO:0003700 Gene3D:1.10.10.60 SUPFAM:SSF46689 IPI:IPI00524767
RefSeq:NP_974333.1 UniGene:At.5471 ProteinModelPortal:F4J7N8
SMR:F4J7N8 PRIDE:F4J7N8 EnsemblPlants:AT3G18380.2 GeneID:821367
KEGG:ath:AT3G18380 OMA:TDYRLQQ PhylomeDB:F4J7N8 Uniprot:F4J7N8
Length = 349
Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
Identities = 196/305 (64%), Positives = 227/305 (74%)
Query: 1 MGRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQM 60
MGRPPSNGGPAFRF EVTEME IL +H+ AMP R IL ALA+KFSESPERKGK++VQ
Sbjct: 1 MGRPPSNGGPAFRFILPEVTEMEAILLQHNTAMPGRHILEALADKFSESPERKGKVVVQF 60
Query: 61 KQVWNWFQNRRYAIRAKSIKSPGKLNVTPLARDDSTPG--RNXXXXXXXXXXXXMSASVP 118
KQ+WNWFQNRRYA+RA+ K+PGKLNV+ + R D P R+ M+ ++P
Sbjct: 61 KQIWNWFQNRRYALRARGNKAPGKLNVSSMPRMD-LPNQMRSVIQPLSVPKTTHMTGNLP 119
Query: 119 PTMPASAN--VPSVSTAGRAASESTFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQV 176
PA + VP V +G S+++++EFEAKSARDGAWYDV AFLA RN + DPEVQV
Sbjct: 120 GMTPAPSGSLVPGVMRSG---SDNSYLEFEAKSARDGAWYDVQAFLAHRNLEIGDPEVQV 176
Query: 177 RFAGFGAEEDEWVNIKRHVRQRSLPCEASECVAVLPGDLILCFQEGKDQALYFDAHVLDA 236
RFAGF EEDEW+N+K+HVRQRSLPCEASECVAVL GDL+LCFQEGKDQALYFDA VLDA
Sbjct: 177 RFAGFEVEEDEWINVKKHVRQRSLPCEASECVAVLAGDLVLCFQEGKDQALYFDAIVLDA 236
Query: 237 QXXXXXXXXXXXXFLVRYDHDQSE-EIVPLRKVCRRPETDYRLQQLH-AMNDSVMVD-HQ 293
Q FLVRY HDQSE EIVPLRK+CRRPETDYRLQQLH A+ND + HQ
Sbjct: 237 QRRRHDVRGCRCRFLVRYSHDQSEQEIVPLRKICRRPETDYRLQQLHNAVNDLANSNQHQ 296
Query: 294 KTSAD 298
+ D
Sbjct: 297 IPALD 301
>TAIR|locus:1005716727 [details] [associations]
symbol:SHH1 "AT1G15215" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP] [GO:0033562 "cotranscriptional gene silencing by
small RNA" evidence=IMP] EMBL:CP002684 EMBL:AC007591 GO:GO:0006306
GO:GO:0006346 UniGene:At.26582 UniGene:At.44195 IPI:IPI00520704
PIR:C86286 RefSeq:NP_849666.2 ProteinModelPortal:Q9XI47 SMR:Q9XI47
PRIDE:Q9XI47 DNASU:838088 EnsemblPlants:AT1G15215.2 GeneID:838088
KEGG:ath:AT1G15215 TAIR:At1g15215 HOGENOM:HOG000241854
InParanoid:Q9XI47 OMA:AVYCDAH PhylomeDB:Q9XI47
ProtClustDB:CLSN2690991 Genevestigator:Q9XI47 GO:GO:0033562
Uniprot:Q9XI47
Length = 258
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 104/261 (39%), Positives = 136/261 (52%)
Query: 14 FNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYA 73
F +E+ +ME + +E + ++ +A FS S R GK + KQV WFQ +
Sbjct: 14 FTLSEIVDMENLYKELGDQSLHKDFCQTVASTFSCSVNRNGKSSITWKQVQIWFQEK--- 70
Query: 74 IRAKSIKSPGKLNVTPLARDD-STPGRNXXXXXXXXXXXXMSASVPPTMPASANVPSVST 132
++ +S L PL D S P AS N V T
Sbjct: 71 LKHQSQPKSKTLPSPPLQIHDLSNPSSY--------------ASNASNATFVGNSTFVQT 116
Query: 133 AGRAASESTFMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192
AS+ + FEAKSARD AWYDVS+FL R T + EV+VRF+GF DEWVN+K
Sbjct: 117 RKGKASDLADLAFEAKSARDYAWYDVSSFLTYRVLRTGELEVRVRFSGFDNRHDEWVNVK 176
Query: 193 RHVRQRSLPCEASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQXXXXXXXXXXXXFLV 252
VR+RS+P E SEC V GDL+LCFQE +DQALY D HVL+ + FLV
Sbjct: 177 TSVRERSIPVEPSECGRVNVGDLLLCFQEREDQALYCDGHVLNIKRGIHDHARCNCVFLV 236
Query: 253 RYDHDQSEEIVPLRKVCRRPE 273
RY+ D +EE + L ++CRRPE
Sbjct: 237 RYELDNTEESLGLERICRRPE 257
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 381 317 0.00083 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 614 (65 KB)
Total size of DFA: 230 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.14u 0.08s 24.22t Elapsed: 00:00:25
Total cpu time: 24.14u 0.08s 24.22t Elapsed: 00:00:25
Start: Thu May 9 23:01:17 2013 End: Thu May 9 23:01:42 2013