BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016887
(381 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P22711|TIN_DROME Muscle-specific homeobox protein tinman OS=Drosophila melanogaster
GN=tin PE=2 SV=2
Length = 416
Score = 35.0 bits (79), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 55 KIMVQMKQVWNWFQNRRYAIRAKSIKSPG-----KLNVTPLARDDSTPGRNVPQPVAAPI 109
K+ + QV WFQNRRY + I G KL PL DS P + P
Sbjct: 337 KLNLSATQVKIWFQNRRYKSKRGDIDCEGIAKHLKLKSEPL---DS--------PTSLPP 385
Query: 110 PIPMSASVPPT 120
PIP PPT
Sbjct: 386 PIPNHVMWPPT 396
>sp|P11605|NIA1_TOBAC Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1
Length = 904
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 22/142 (15%)
Query: 31 NAMPSREILV-ALAEKFSESPERK-GKIMVQMKQVWNWFQNRRYAIRAK-SIKSPGKLNV 87
+ + ++EI V A E + PE+ +M M W R K ++ P K +
Sbjct: 434 DLLSAKEIAVRAWDETLNTQPEKLIWNVMGMMNNCW---------FRVKMNVCKPHKGEI 484
Query: 88 TPLARDDSTPGRNVPQPVAAPIPIPMSASVPPTMPASANVPSVSTAGRAASESTFMEFEA 147
+ + PG +A + +SA PPT+ S + P ++TA + S S E
Sbjct: 485 GIVFEHPTQPGNQSGGWMAKERHLEISAEAPPTLKKSISTPFMNTASKMYSMS---EVRK 541
Query: 148 KSARDGAW-------YDVSAFL 162
S+ D AW YD + FL
Sbjct: 542 HSSADSAWIIVHGHIYDATRFL 563
>sp|P17570|NIA_SOLLC Nitrate reductase [NADH] OS=Solanum lycopersicum GN=NIA PE=3 SV=1
Length = 911
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 22/142 (15%)
Query: 31 NAMPSREILV-ALAEKFSESPERK-GKIMVQMKQVWNWFQNRRYAIRAK-SIKSPGKLNV 87
+ + ++EI V A E + PE+ +M M W R K ++ P K +
Sbjct: 439 DLLSAKEIAVRATDETLNTQPEKLIWNVMGMMNNCW---------FRVKMNVCKPHKGEI 489
Query: 88 TPLARDDSTPGRNVPQPVAAPIPIPMSASVPPTMPASANVPSVSTAGRAASESTFMEFEA 147
+ + PG +A + +SA PPT+ S + P ++TA + S S E
Sbjct: 490 GIVFEHPTQPGNQSGGWMAKERHLEISAVAPPTLKKSISTPFMNTASKMYSMS---EVRK 546
Query: 148 KSARDGAW-------YDVSAFL 162
++ D AW YD S FL
Sbjct: 547 HNSSDSAWIIVHGHIYDASRFL 568
>sp|Q8L7H4|HDG4_ARATH Homeobox-leucine zipper protein HDG4 OS=Arabidopsis thaliana
GN=HDG4 PE=1 SV=1
Length = 709
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 13 RFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72
R +++ +ME + +E NA P + + L++K SP QV WFQN+R
Sbjct: 94 RHTASQIQQMEALFKE--NAHPDTKTRLRLSKKLGLSP----------IQVKFWFQNKRT 141
Query: 73 AIRAKSIKS 81
I+A+ +S
Sbjct: 142 QIKAQQSRS 150
>sp|P43697|NKX22_MESAU Homeobox protein Nkx-2.2 OS=Mesocricetus auratus GN=NKX2-2 PE=2
SV=1
Length = 273
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 25/95 (26%)
Query: 5 PSNGGPAFR-------FNPAEVTEMEG-ILQEHHNAMPSREILVALAEKFSESPERKGKI 56
P GG A + F+ A+ E+E Q+ + + P RE L +L I
Sbjct: 119 PGGGGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASL-------------I 165
Query: 57 MVQMKQVWNWFQNRRYAI-RAKSIKSPGKLNVTPL 90
+ QV WFQN RY + RA++ K + VTPL
Sbjct: 166 RLTPTQVKIWFQNHRYKMKRARAEKG---MEVTPL 197
>sp|A6NCS4|NKX26_HUMAN Homeobox protein Nkx-2.6 OS=Homo sapiens GN=NKX2-6 PE=1 SV=1
Length = 301
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 24/105 (22%)
Query: 35 SREILVALAEKFSE-----SPERK---GKIMVQMKQVWNWFQNRRYAIRA----KSIK-- 80
S+ ++AL +F + +PER+ + + QV WFQNRRY + KS++
Sbjct: 140 SQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSLELA 199
Query: 81 ----SPGKLNVTPLARDDSTPGRNV--PQPVAAPIPIPMSASVPP 119
+P ++ V L RD G+ P P A P P SA+V P
Sbjct: 200 GHPLTPRRVAVPVLVRD----GKPCLGPGPGAPAFPSPYSAAVSP 240
>sp|O95096|NKX22_HUMAN Homeobox protein Nkx-2.2 OS=Homo sapiens GN=NKX2-2 PE=2 SV=1
Length = 273
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 25/95 (26%)
Query: 5 PSNGGPAFR-------FNPAEVTEMEG-ILQEHHNAMPSREILVALAEKFSESPERKGKI 56
P GG A + F+ A+ E+E Q+ + + P RE L +L I
Sbjct: 119 PGGGGDAGKKRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASL-------------I 165
Query: 57 MVQMKQVWNWFQNRRYAI-RAKSIKSPGKLNVTPL 90
+ QV WFQN RY + RA++ K + VTPL
Sbjct: 166 RLTPTQVKIWFQNHRYKMKRARAEKG---MEVTPL 197
>sp|Q7XUJ5|HOX22_ORYSJ Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp.
japonica GN=HOX22 PE=2 SV=2
Length = 276
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 13 RFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72
RF ++ +E + HH + RE E ++ +Q +QV WFQN+R
Sbjct: 76 RFTEEQIRSLESMFHAHHAKLEPRE-----------KAELARELGLQPRQVAIWFQNKRA 124
Query: 73 AIRAKSIK 80
R+K ++
Sbjct: 125 RWRSKQLE 132
>sp|Q01IK0|HOX22_ORYSI Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica
GN=HOX22 PE=2 SV=2
Length = 276
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 13 RFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72
RF ++ +E + HH + RE E ++ +Q +QV WFQN+R
Sbjct: 76 RFTEEQIRSLESMFHAHHAKLEPRE-----------KAELARELGLQPRQVAIWFQNKRA 124
Query: 73 AIRAKSIK 80
R+K ++
Sbjct: 125 RWRSKQLE 132
>sp|P97334|NKX23_MOUSE Homeobox protein Nkx-2.3 OS=Mus musculus GN=Nkx2-3 PE=2 SV=2
Length = 362
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 3 RPPSNGGPAFRFNPAEVTEMEG-ILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMK 61
+P S P F+ A+V E+E Q+ + + P RE L + + +
Sbjct: 141 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLAS-------------SLKLTST 187
Query: 62 QVWNWFQNRRYAIR 75
QV WFQNRRY +
Sbjct: 188 QVKIWFQNRRYKCK 201
>sp|Q8TAU0|NKX23_HUMAN Homeobox protein Nkx-2.3 OS=Homo sapiens GN=NKX2-3 PE=1 SV=2
Length = 364
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 3 RPPSNGGPAFRFNPAEVTEMEG-ILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMK 61
+P S P F+ A+V E+E Q+ + + P RE L + + +
Sbjct: 144 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLAS-------------SLKLTST 190
Query: 62 QVWNWFQNRRYAIR 75
QV WFQNRRY +
Sbjct: 191 QVKIWFQNRRYKCK 204
>sp|P42587|HNK2_XENLA Homeobox protein XENK-2 OS=Xenopus laevis PE=2 SV=1
Length = 196
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 28/116 (24%)
Query: 14 FNPAEVTEMEG-ILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72
F+ A+ E+E Q+ + + P RE L +L I + QV WFQN RY
Sbjct: 76 FSKAQTYELERRFRQQRYLSAPEREHLASL-------------IRLTPTQVKIWFQNHRY 122
Query: 73 AI-RAKSIK--------SPGKLNVTPLARDDSTPGRNVP----QPVAAPIPIPMSA 115
+ RA+S K SP ++ V L R D P + P P IP SA
Sbjct: 123 KMKRARSEKGMEVTPLPSPRRVAVPVLVR-DGKPCHTLKAQDFNPATFPTGIPFSA 177
>sp|P43379|CDGT2_BACCI Cyclomaltodextrin glucanotransferase OS=Bacillus circulans GN=cgt
PE=1 SV=1
Length = 713
Score = 32.0 bits (71), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 260 EEIVPLRKVCRRPETDYRLQQLHAMNDSVMVDHQKTSADLSASTATRVTVSSAEMMHKQV 319
+++ PLRK C P Y Q +N+ V++ +K ++++ R + A + +
Sbjct: 419 QKLAPLRK-CN-PAIAYGSTQERWINNDVLIYERKFGSNVAVVAVNRNLNAPASI--SGL 474
Query: 320 NANIAQGAPLSHSFVSVPAQTVEPKNASASSGISSSNPAVPPGGAAVISGTAAT-TAATG 378
++ QG S+ V + S SG ++SN + GG AV TAAT T G
Sbjct: 475 VTSLPQG-----SYNDVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIG 529
Query: 379 H 379
H
Sbjct: 530 H 530
>sp|B7ZQA9|P5F12_XENLA POU domain, class 5, transcription factor 1.2 OS=Xenopus laevis
GN=pou5f1.2 PE=1 SV=1
Length = 445
Score = 32.0 bits (71), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 15/67 (22%)
Query: 66 WFQNRRYAIRAKSIKSPGKLNVTPLARDDSTPGRNVPQ----PVAAPIPIP--MSASVPP 119
WF NRR GK V P R++ + PQ P P P+P M + V P
Sbjct: 359 WFCNRRQK---------GKRQVYPYIRENGGEPYDAPQTLTPPSQGPFPLPQVMPSQVFP 409
Query: 120 TMPASAN 126
T+P AN
Sbjct: 410 TVPLGAN 416
>sp|Q6BK07|STU1_DEBHA Protein STU1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767
/ JCM 1990 / NBRC 0083 / IGC 2968) GN=STU1 PE=3 SV=2
Length = 1529
Score = 31.6 bits (70), Expect = 9.3, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 251 LVRYDHDQSEEIVPLRKVCRRPETDYRLQQLHAMNDSVMVDHQKTSADLSASTATRVTVS 310
L+R + D E ++ K + + +L+ + S D QK +++ S +++ S
Sbjct: 177 LLRLNSDSDEVLIENIKTLFKDYYSLKHNRLYKFDLSKEFDTQKIPSNVHESIISQIGTS 236
Query: 311 SAEMMHKQVNANIAQGAPLSHSFVSVPAQTVEPKNASASSGISSSN 356
S+ +M KQ +I L H+F+S V + G SSN
Sbjct: 237 SSILM-KQATPDIG----LDHNFISAGTTRVTVNSMGRDKGTISSN 277
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,755,904
Number of Sequences: 539616
Number of extensions: 5701659
Number of successful extensions: 26613
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 25752
Number of HSP's gapped (non-prelim): 971
length of query: 381
length of database: 191,569,459
effective HSP length: 119
effective length of query: 262
effective length of database: 127,355,155
effective search space: 33367050610
effective search space used: 33367050610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)