Query 016887
Match_columns 381
No_of_seqs 144 out of 235
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 05:26:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cuf_A FLJ21616 protein; homeo 99.8 1.4E-18 4.7E-23 139.7 8.6 75 4-80 4-83 (95)
2 2da2_A Alpha-fetoprotein enhan 99.7 4E-18 1.4E-22 129.2 7.5 66 2-79 2-67 (70)
3 2dmt_A Homeobox protein BARH-l 99.7 4.5E-18 1.5E-22 132.7 7.7 62 6-79 16-77 (80)
4 2cra_A Homeobox protein HOX-B1 99.7 4.4E-18 1.5E-22 129.5 7.3 64 4-79 4-67 (70)
5 2l7z_A Homeobox protein HOX-A1 99.7 7.1E-18 2.4E-22 129.8 8.4 68 1-80 1-68 (73)
6 2dmu_A Homeobox protein goosec 99.7 6.6E-18 2.3E-22 128.3 7.9 62 6-79 6-67 (70)
7 1nk2_P Homeobox protein VND; h 99.7 5.7E-18 2E-22 131.2 7.6 66 2-79 4-69 (77)
8 2da3_A Alpha-fetoprotein enhan 99.7 4E-18 1.4E-22 131.7 6.3 64 4-79 14-77 (80)
9 2djn_A Homeobox protein DLX-5; 99.7 4.6E-18 1.6E-22 129.4 6.3 65 3-79 3-67 (70)
10 2e1o_A Homeobox protein PRH; D 99.7 1.1E-17 3.8E-22 127.3 8.1 63 5-79 5-67 (70)
11 2hdd_A Protein (engrailed home 99.7 6.5E-18 2.2E-22 125.3 6.2 58 7-76 3-60 (61)
12 2h1k_A IPF-1, pancreatic and d 99.7 7.7E-18 2.6E-22 125.8 6.6 61 6-78 2-62 (63)
13 2da1_A Alpha-fetoprotein enhan 99.7 8.5E-18 2.9E-22 127.4 6.7 64 4-79 4-67 (70)
14 2dms_A Homeobox protein OTX2; 99.7 2.1E-17 7.3E-22 128.6 9.1 65 4-80 4-68 (80)
15 1ig7_A Homeotic protein MSX-1; 99.7 1E-17 3.5E-22 122.6 6.7 57 8-76 1-57 (58)
16 3a01_A Homeodomain-containing 99.7 1.1E-17 3.8E-22 134.6 7.1 65 3-79 13-77 (93)
17 2kt0_A Nanog, homeobox protein 99.7 1.2E-17 4.3E-22 130.5 6.9 63 4-78 19-81 (84)
18 2vi6_A Homeobox protein nanog; 99.7 1.1E-17 3.6E-22 124.5 5.9 59 7-77 3-61 (62)
19 2dmq_A LIM/homeobox protein LH 99.7 2E-17 6.9E-22 128.2 7.6 63 5-79 5-67 (80)
20 2cue_A Paired box protein PAX6 99.7 1.5E-17 5.3E-22 129.6 6.9 64 4-79 4-67 (80)
21 3a02_A Homeobox protein arista 99.7 1.2E-17 4E-22 123.6 5.8 58 9-78 1-58 (60)
22 2da4_A Hypothetical protein DK 99.7 1.2E-17 4.3E-22 129.9 5.6 63 6-80 7-73 (80)
23 1jgg_A Segmentation protein EV 99.7 2.1E-17 7.2E-22 122.2 6.5 58 8-77 2-59 (60)
24 2ly9_A Zinc fingers and homeob 99.7 3.4E-17 1.2E-21 125.3 7.9 63 5-79 4-66 (74)
25 2da5_A Zinc fingers and homeob 99.7 3.5E-17 1.2E-21 126.7 7.7 64 4-79 4-67 (75)
26 1ahd_P Antennapedia protein mu 99.7 2.5E-17 8.5E-22 125.2 6.4 61 7-79 2-62 (68)
27 2hi3_A Homeodomain-only protei 99.7 3.2E-17 1.1E-21 125.9 7.0 61 7-79 2-63 (73)
28 1bw5_A ISL-1HD, insulin gene e 99.7 2.5E-17 8.5E-22 123.9 6.2 61 7-79 3-63 (66)
29 2ecc_A Homeobox and leucine zi 99.7 3.9E-17 1.3E-21 129.8 7.3 62 6-79 2-63 (76)
30 1b8i_A Ultrabithorax, protein 99.7 2.9E-17 9.9E-22 128.8 6.4 61 6-78 19-79 (81)
31 1wh5_A ZF-HD homeobox family p 99.7 2.7E-17 9.4E-22 129.7 6.2 60 7-76 17-78 (80)
32 3a03_A T-cell leukemia homeobo 99.7 3.4E-17 1.1E-21 120.1 6.2 54 12-77 2-55 (56)
33 3rkq_A Homeobox protein NKX-2. 99.7 3.7E-17 1.3E-21 118.6 6.2 57 7-75 2-58 (58)
34 2r5y_A Homeotic protein sex co 99.7 2.9E-17 9.9E-22 130.1 5.9 61 6-78 27-87 (88)
35 1ftt_A TTF-1 HD, thyroid trans 99.7 4.7E-17 1.6E-21 123.4 6.8 61 7-79 2-62 (68)
36 1puf_A HOX-1.7, homeobox prote 99.7 5.1E-17 1.7E-21 125.9 7.1 61 6-78 12-72 (77)
37 2k40_A Homeobox expressed in E 99.7 4.7E-17 1.6E-21 122.7 6.6 61 7-79 1-61 (67)
38 1fjl_A Paired protein; DNA-bin 99.7 6E-17 2E-21 126.3 7.0 62 6-79 17-78 (81)
39 1zq3_P PRD-4, homeotic bicoid 99.7 4.5E-17 1.6E-21 123.5 6.1 60 8-79 3-62 (68)
40 2m0c_A Homeobox protein arista 99.7 1.2E-16 4.2E-21 121.7 8.0 62 6-79 8-69 (75)
41 1yz8_P Pituitary homeobox 2; D 99.7 2.3E-17 8E-22 124.9 3.7 61 7-79 3-63 (68)
42 1uhs_A HOP, homeodomain only p 99.7 9.9E-17 3.4E-21 122.6 7.1 61 8-79 2-62 (72)
43 1x2n_A Homeobox protein pknox1 99.7 1.8E-16 6.3E-21 121.2 8.1 67 3-79 3-70 (73)
44 1b72_A Protein (homeobox prote 99.7 7.6E-17 2.6E-21 130.0 5.9 62 6-79 33-94 (97)
45 1akh_A Protein (mating-type pr 99.7 8.7E-17 3E-21 118.7 5.5 57 7-75 5-61 (61)
46 1wh7_A ZF-HD homeobox family p 99.7 7.1E-17 2.4E-21 127.9 5.3 59 7-76 17-78 (80)
47 3nar_A ZHX1, zinc fingers and 99.7 1E-16 3.5E-21 129.2 6.1 61 6-78 24-84 (96)
48 2ecb_A Zinc fingers and homeob 99.6 3.9E-16 1.3E-20 126.7 9.5 59 9-79 13-71 (89)
49 2dn0_A Zinc fingers and homeob 99.6 1.4E-16 4.7E-21 123.2 6.3 59 9-79 10-68 (76)
50 1puf_B PRE-B-cell leukemia tra 99.6 4.2E-16 1.5E-20 119.2 7.0 63 8-80 2-65 (73)
51 1du6_A PBX1, homeobox protein 99.6 1.9E-16 6.5E-21 118.2 4.4 62 6-77 2-64 (64)
52 2da6_A Hepatocyte nuclear fact 99.6 4.2E-16 1.5E-20 130.0 7.0 76 2-79 1-87 (102)
53 1b72_B Protein (PBX1); homeodo 99.6 4.4E-16 1.5E-20 122.4 6.0 63 8-80 2-65 (87)
54 2dmn_A Homeobox protein TGIF2L 99.6 1.5E-15 5.3E-20 119.9 9.1 66 5-80 5-71 (83)
55 1au7_A Protein PIT-1, GHF-1; c 99.6 4.1E-16 1.4E-20 134.7 6.1 64 2-77 82-145 (146)
56 2dmp_A Zinc fingers and homeob 99.6 1.6E-15 5.3E-20 121.4 8.2 59 9-79 15-73 (89)
57 2cqx_A LAG1 longevity assuranc 99.6 2.6E-16 8.9E-21 121.9 3.5 59 8-78 9-68 (72)
58 1k61_A Mating-type protein alp 99.6 1.1E-15 3.7E-20 112.7 6.3 57 11-77 2-59 (60)
59 3d1n_I POU domain, class 6, tr 99.6 1.1E-15 3.8E-20 131.8 7.2 63 2-76 88-150 (151)
60 2l9r_A Homeobox protein NKX-3. 99.6 1.4E-15 4.9E-20 117.9 6.8 64 1-79 1-64 (69)
61 2e19_A Transcription factor 8; 99.6 1.1E-15 3.9E-20 116.1 5.8 60 6-77 2-61 (64)
62 3nau_A Zinc fingers and homeob 99.6 9.9E-16 3.4E-20 119.4 5.5 52 14-77 11-62 (66)
63 1e3o_C Octamer-binding transcr 99.6 1.2E-15 4E-20 133.2 6.2 60 6-77 100-159 (160)
64 2xsd_C POU domain, class 3, tr 99.6 1.2E-15 4E-20 134.4 6.1 62 6-79 98-159 (164)
65 1lfb_A Liver transcription fac 99.6 1.5E-15 5.1E-20 125.0 4.7 74 4-79 6-90 (99)
66 1mnm_C Protein (MAT alpha-2 tr 99.6 4E-15 1.4E-19 117.6 6.6 60 7-76 27-87 (87)
67 2d5v_A Hepatocyte nuclear fact 99.6 2.3E-15 7.9E-20 130.7 5.5 63 5-79 95-157 (164)
68 1le8_B Mating-type protein alp 99.6 4.7E-15 1.6E-19 116.7 6.6 62 8-79 3-65 (83)
69 1x2m_A LAG1 longevity assuranc 99.5 3.6E-15 1.2E-19 115.0 5.0 52 16-78 9-60 (64)
70 3l1p_A POU domain, class 5, tr 99.5 1.3E-14 4.5E-19 126.2 5.2 60 6-77 95-154 (155)
71 1wi3_A DNA-binding protein SAT 99.5 5.9E-14 2E-18 111.0 6.5 60 6-76 6-65 (71)
72 3k2a_A Homeobox protein MEIS2; 99.5 6E-14 2.1E-18 107.0 5.8 57 13-79 4-61 (67)
73 1ic8_A Hepatocyte nuclear fact 99.3 2E-13 6.7E-18 124.2 2.6 68 7-76 115-193 (194)
74 2h8r_A Hepatocyte nuclear fact 99.3 2.7E-12 9.2E-17 119.5 5.7 66 7-74 142-218 (221)
75 1mh3_A Maltose binding-A1 home 99.2 3.4E-12 1.2E-16 119.1 4.7 54 10-75 368-421 (421)
76 2lk2_A Homeobox protein TGIF1; 99.1 3.5E-11 1.2E-15 98.3 5.2 59 11-79 9-68 (89)
77 2da7_A Zinc finger homeobox pr 99.1 1.8E-10 6E-15 91.3 6.0 49 16-76 14-62 (71)
78 2nzz_A Penetratin conjugated G 98.4 3.6E-08 1.2E-12 69.3 0.3 19 61-79 1-19 (37)
79 3h8z_A FragIle X mental retard 95.6 0.084 2.9E-06 45.5 10.1 109 142-271 5-117 (128)
80 2ro0_A Histone acetyltransfera 95.1 0.029 9.8E-07 45.9 5.1 44 151-197 34-77 (92)
81 3ask_A E3 ubiquitin-protein li 94.9 0.07 2.4E-06 49.9 8.1 92 146-240 10-109 (226)
82 2eko_A Histone acetyltransfera 94.8 0.016 5.3E-07 47.1 3.0 47 151-200 25-71 (87)
83 3fdr_A Tudor and KH domain-con 94.7 0.026 9.1E-07 44.4 4.0 56 146-208 35-94 (94)
84 2eqm_A PHD finger protein 20-l 94.6 0.075 2.6E-06 42.9 6.3 51 143-198 24-75 (88)
85 2rnz_A Histone acetyltransfera 94.1 0.079 2.7E-06 43.7 5.6 44 151-197 36-79 (94)
86 2bud_A Males-absent on the fir 93.3 0.053 1.8E-06 44.8 3.2 43 152-196 27-71 (92)
87 1wgs_A MYST histone acetyltran 93.3 0.11 3.6E-06 44.8 5.2 46 152-198 25-70 (133)
88 4a4f_A SurviVal of motor neuro 93.1 0.19 6.5E-06 37.7 5.8 52 209-269 8-59 (64)
89 3oa6_A MALE-specific lethal 3 92.9 0.2 7E-06 42.4 6.4 68 209-278 19-89 (110)
90 2lcc_A AT-rich interactive dom 92.4 0.048 1.6E-06 43.0 1.7 47 151-200 20-66 (76)
91 2equ_A PHD finger protein 20-l 91.8 0.29 9.9E-06 38.4 5.5 56 205-272 5-60 (74)
92 3pnw_C Tudor domain-containing 91.8 0.41 1.4E-05 37.4 6.4 64 201-273 5-72 (77)
93 2diq_A Tudor and KH domain-con 91.7 0.11 3.9E-06 42.0 3.3 55 146-209 40-100 (110)
94 1g5v_A SurviVal motor neuron p 91.6 0.3 1E-05 39.5 5.5 53 209-270 10-62 (88)
95 1mhn_A SurviVal motor neuron p 91.3 0.39 1.3E-05 35.3 5.5 55 208-271 2-56 (59)
96 4hae_A CDY-like 2, chromodomai 91.3 0.11 3.9E-06 41.2 2.8 48 142-192 13-60 (81)
97 3db3_A E3 ubiquitin-protein li 90.8 0.54 1.9E-05 42.3 6.9 89 146-238 18-124 (161)
98 2f5k_A MORF-related gene 15 is 90.5 0.091 3.1E-06 43.8 1.7 42 152-196 34-75 (102)
99 3s6w_A Tudor domain-containing 89.9 0.2 6.9E-06 36.0 2.8 37 146-186 9-45 (54)
100 3s6w_A Tudor domain-containing 89.2 0.92 3.1E-05 32.5 5.9 51 210-269 2-52 (54)
101 3ntk_A Maternal protein tudor; 88.9 0.15 5.2E-06 44.0 1.9 53 147-209 56-113 (169)
102 1mhn_A SurviVal motor neuron p 88.8 0.21 7.2E-06 36.7 2.3 46 145-197 10-55 (59)
103 3p8d_A Medulloblastoma antigen 88.6 0.75 2.6E-05 35.8 5.4 51 208-270 5-55 (67)
104 2ys9_A Homeobox and leucine zi 88.3 0.4 1.4E-05 37.9 3.7 40 19-70 18-57 (70)
105 2rsn_A Chromo domain-containin 87.5 0.2 6.7E-06 39.2 1.5 41 152-192 18-58 (75)
106 2lrq_A Protein MRG15, NUA4 com 87.3 0.11 3.8E-06 41.7 0.0 38 152-191 24-61 (85)
107 2d9t_A Tudor domain-containing 87.2 1.3 4.3E-05 34.5 5.9 57 208-273 8-64 (78)
108 3sd4_A PHD finger protein 20; 87.0 0.44 1.5E-05 36.2 3.2 45 143-192 17-61 (69)
109 2d9t_A Tudor domain-containing 86.6 0.38 1.3E-05 37.5 2.6 56 145-207 16-72 (78)
110 1g5v_A SurviVal motor neuron p 86.3 0.39 1.3E-05 38.8 2.7 47 144-197 16-62 (88)
111 3qii_A PHD finger protein 20; 86.3 1.1 3.7E-05 36.5 5.3 50 207-268 19-68 (85)
112 2ldm_A Uncharacterized protein 86.2 0.14 4.9E-06 41.2 0.0 49 208-268 5-53 (81)
113 2lcc_A AT-rich interactive dom 85.6 2.2 7.4E-05 33.5 6.5 55 209-268 5-61 (76)
114 4a4f_A SurviVal of motor neuro 85.1 0.45 1.5E-05 35.6 2.3 47 144-197 14-60 (64)
115 2f5k_A MORF-related gene 15 is 84.3 1.8 6.1E-05 36.1 5.8 52 209-269 22-75 (102)
116 3pnw_C Tudor domain-containing 83.9 0.64 2.2E-05 36.3 2.8 39 144-186 23-61 (77)
117 3m9q_A Protein MALE-specific l 82.5 2.9 9.9E-05 34.8 6.3 59 209-267 19-80 (101)
118 1wjq_A KIAA1798 protein; MBT d 81.8 0.87 3E-05 38.2 3.0 44 143-191 18-61 (107)
119 1wgs_A MYST histone acetyltran 81.5 3.2 0.00011 35.6 6.4 54 209-268 12-67 (133)
120 3fwb_A Cell division control p 81.3 2.6 9E-05 32.8 5.5 49 1-49 1-55 (161)
121 1jko_C HIN recombinase, DNA-in 81.1 0.74 2.5E-05 30.4 1.9 42 14-72 6-47 (52)
122 2lv7_A Calcium-binding protein 80.6 3 0.0001 32.6 5.6 53 8-68 24-79 (100)
123 3fdr_A Tudor and KH domain-con 80.3 3.8 0.00013 32.0 6.1 55 208-272 26-80 (94)
124 3m9p_A MALE-specific lethal 3 80.2 5.3 0.00018 33.8 7.2 60 209-269 19-82 (110)
125 4b9w_A TDRD1, tudor domain-con 79.7 1.2 4.1E-05 39.2 3.3 57 145-209 72-133 (201)
126 4b9x_A TDRD1, tudor domain-con 78.9 1.3 4.3E-05 39.8 3.3 55 146-209 73-133 (226)
127 3i5g_B Myosin regulatory light 78.5 4.2 0.00014 33.4 6.1 51 10-68 6-59 (153)
128 2hqx_A P100 CO-activator tudor 77.7 1.9 6.4E-05 38.7 4.0 55 146-208 73-133 (246)
129 2rso_A Chromatin-associated pr 77.0 0.84 2.9E-05 36.9 1.4 37 156-192 31-69 (92)
130 2ro0_A Histone acetyltransfera 77.0 5.8 0.0002 32.3 6.4 53 207-268 21-75 (92)
131 3db3_A E3 ubiquitin-protein li 76.8 4.7 0.00016 36.3 6.2 69 203-273 4-83 (161)
132 2k3y_A Chromatin modification- 75.3 2.3 8E-05 37.1 3.8 26 209-238 9-34 (136)
133 2dnt_A Chromodomain protein, Y 74.1 0.82 2.8E-05 35.6 0.6 40 153-192 11-50 (78)
134 2ba3_A NIKA; dimer, bacterial 73.4 4.1 0.00014 28.6 4.0 39 1-40 4-47 (51)
135 2eko_A Histone acetyltransfera 73.4 5 0.00017 32.4 5.0 58 208-270 8-68 (87)
136 1g6z_A CLR4 protein; transfera 73.0 1.5 5.1E-05 33.4 1.8 40 153-192 6-46 (70)
137 2rnz_A Histone acetyltransfera 71.9 6.7 0.00023 32.2 5.5 52 208-268 24-77 (94)
138 3j04_B Myosin regulatory light 71.4 6.5 0.00022 30.1 5.2 48 14-69 1-51 (143)
139 2glo_A Brinker CG9653-PA; prot 70.0 5.9 0.0002 28.1 4.3 47 10-69 2-48 (59)
140 2pmy_A RAS and EF-hand domain- 69.9 4.3 0.00015 30.2 3.7 49 10-68 17-68 (91)
141 2lhi_A Calmodulin, serine/thre 69.8 3.4 0.00011 34.7 3.5 50 11-68 2-54 (176)
142 1j7q_A CAVP, calcium vector pr 69.7 7.5 0.00026 28.0 4.9 50 11-68 5-60 (86)
143 2yum_A ZZZ3 protein, zinc fing 69.5 20 0.0007 26.8 7.4 65 10-83 7-71 (75)
144 1wjr_A KIAA1617 protein; MBT d 69.4 2.8 9.5E-05 35.8 2.8 45 143-192 16-62 (127)
145 2mys_C Myosin; muscle protein, 69.4 9 0.00031 29.2 5.5 48 13-68 1-51 (149)
146 1q3l_A Heterochromatin protein 68.9 1.3 4.5E-05 34.2 0.7 40 152-192 13-52 (69)
147 2diq_A Tudor and KH domain-con 68.8 5.5 0.00019 32.0 4.4 54 209-272 32-85 (110)
148 1pfb_A Polycomb protein; chrom 68.7 1.5 5E-05 31.9 0.8 36 156-192 4-39 (55)
149 3fdt_A Chromobox protein homol 68.6 1.5 5E-05 32.4 0.9 36 156-192 4-39 (59)
150 3h8z_A FragIle X mental retard 68.1 2.7 9.4E-05 36.1 2.6 48 144-198 66-117 (128)
151 1u78_A TC3 transposase, transp 67.7 9.7 0.00033 29.9 5.6 45 1-69 1-45 (141)
152 3h91_A Chromobox protein homol 67.6 1.5 5.1E-05 31.8 0.7 36 156-192 4-39 (54)
153 3i91_A Chromobox protein homol 67.4 1.5 5.1E-05 31.7 0.7 36 156-192 4-39 (54)
154 3lwe_A M-phase phosphoprotein 67.1 1.3 4.4E-05 33.0 0.3 36 156-192 5-40 (62)
155 1avs_A Troponin C; muscle cont 66.7 9.6 0.00033 27.7 5.0 49 12-68 12-63 (90)
156 2wac_A CG7008-PA; unknown func 66.4 3.3 0.00011 35.8 2.8 55 146-209 59-118 (218)
157 3f2u_A Chromobox protein homol 66.2 1.5 5E-05 31.9 0.4 36 156-192 3-38 (55)
158 1pdq_A Polycomb protein; methy 66.0 1.9 6.4E-05 33.6 1.0 40 152-192 17-56 (72)
159 2jnf_A Troponin C; stretch act 65.8 8.7 0.0003 29.9 4.9 51 10-68 3-57 (158)
160 2k3y_A Chromatin modification- 64.8 2.4 8.2E-05 37.0 1.6 20 173-192 78-97 (136)
161 1wdc_B Scallop myosin; calcium 64.1 15 0.00051 28.7 6.0 52 10-69 8-62 (156)
162 3ox6_A Calcium-binding protein 63.9 15 0.00053 27.9 5.9 39 12-50 3-44 (153)
163 1dtl_A Cardiac troponin C; hel 63.2 14 0.00048 28.7 5.6 52 9-68 7-62 (161)
164 2joj_A Centrin protein; N-term 63.2 8.7 0.0003 26.7 4.0 47 14-68 1-50 (77)
165 1hlv_A CENP-B, major centromer 63.1 16 0.00053 29.0 6.0 49 10-73 4-52 (131)
166 3oa6_A MALE-specific lethal 3 63.0 3.1 0.00011 35.2 1.9 21 172-192 59-79 (110)
167 3bdl_A Staphylococcal nuclease 62.9 4.6 0.00016 41.0 3.4 57 147-209 420-480 (570)
168 2dnv_A Chromobox protein homol 62.6 2.1 7.3E-05 32.0 0.7 38 154-192 9-46 (64)
169 3g7l_A Chromo domain-containin 62.6 3 0.0001 30.9 1.6 40 152-192 4-44 (61)
170 3m9q_A Protein MALE-specific l 61.9 2.9 0.0001 34.8 1.5 26 170-196 57-82 (101)
171 2ovk_B RLC, myosin regulatory 61.3 9.9 0.00034 29.6 4.5 52 10-69 6-60 (153)
172 2cqq_A RSGI RUH-037, DNAJ homo 61.1 15 0.0005 28.4 5.3 48 8-67 5-52 (72)
173 2elh_A CG11849-PA, LD40883P; s 61.0 47 0.0016 25.2 8.1 44 9-69 18-61 (87)
174 3i5g_C Myosin catalytic light 60.3 6.4 0.00022 32.5 3.3 46 13-66 2-52 (159)
175 1ap0_A Modifier protein 1; chr 59.7 3.2 0.00011 31.9 1.3 37 155-192 13-49 (73)
176 3qrx_A Centrin; calcium-bindin 59.6 13 0.00046 29.2 5.0 42 8-49 16-60 (169)
177 2k1b_A Chromobox protein homol 59.5 2.1 7.2E-05 33.4 0.2 38 154-192 20-57 (73)
178 2k9i_A Plasmid PRN1, complete 59.4 7.4 0.00025 26.9 3.0 44 2-46 1-47 (55)
179 3m9p_A MALE-specific lethal 3 58.3 3.8 0.00013 34.7 1.6 49 142-191 26-78 (110)
180 2ktg_A Calmodulin, putative; e 57.4 13 0.00046 26.3 4.2 50 11-68 5-57 (85)
181 2mys_B Myosin; muscle protein, 57.2 20 0.00067 28.3 5.6 50 12-69 17-70 (166)
182 2bud_A Males-absent on the fir 56.6 22 0.00076 29.2 5.9 53 211-268 16-70 (92)
183 2lmt_A Calmodulin-related prot 56.2 6.3 0.00022 31.3 2.5 48 13-68 3-53 (148)
184 2lrq_A Protein MRG15, NUA4 com 60.9 2.4 8.2E-05 33.9 0.0 39 209-256 12-50 (85)
185 1c07_A Protein (epidermal grow 55.8 10 0.00035 28.8 3.6 38 13-50 3-43 (95)
186 2kvm_A Chromobox protein homol 55.4 3.6 0.00012 31.6 0.9 39 153-192 11-49 (74)
187 2d9u_A Chromobox protein homol 55.3 3.9 0.00013 31.5 1.1 39 153-192 8-46 (74)
188 1exr_A Calmodulin; high resolu 54.9 19 0.00065 28.0 5.1 38 13-50 3-43 (148)
189 2wac_A CG7008-PA; unknown func 53.8 23 0.00079 30.5 5.9 83 172-268 16-99 (218)
190 1tc3_C Protein (TC3 transposas 53.4 22 0.00076 22.4 4.5 40 13-69 5-44 (51)
191 3u0k_A Rcamp; fluorescent prot 50.8 17 0.00058 37.0 5.2 50 11-68 293-345 (440)
192 1fi6_A EH domain protein REPS1 50.8 15 0.0005 27.7 3.7 38 13-50 2-42 (92)
193 2opo_A Polcalcin CHE A 3; calc 50.0 16 0.00056 26.0 3.7 48 12-68 3-53 (86)
194 3mts_A Histone-lysine N-methyl 50.0 5.4 0.00018 30.1 1.1 34 158-192 3-36 (64)
195 1oz2_A Lethal(3)malignant brai 49.0 42 0.0014 32.5 7.4 99 143-259 46-188 (331)
196 4ds7_A Calmodulin, CAM; protei 48.0 23 0.00078 26.8 4.4 39 12-50 3-44 (147)
197 1w7j_B Myosin light chain 1; m 47.9 5.2 0.00018 31.0 0.7 48 13-68 3-53 (151)
198 2ovk_C Myosin catalytic light 47.9 11 0.00036 29.7 2.6 38 13-50 2-44 (159)
199 2hqx_A P100 CO-activator tudor 47.4 33 0.0011 30.5 6.0 53 209-272 65-117 (246)
200 1fpw_A Yeast frequenin, calciu 46.4 45 0.0015 26.7 6.2 47 1-47 1-56 (190)
201 4hcz_A PHD finger protein 1; p 45.1 41 0.0014 25.7 5.3 31 208-241 2-32 (58)
202 2e5p_A Protein PHF1, PHD finge 44.6 26 0.00088 27.6 4.2 36 203-241 3-38 (68)
203 2l8d_A Lamin-B receptor; DNA b 44.5 54 0.0018 25.7 6.0 50 209-268 9-58 (66)
204 1wdc_C Scallop myosin; calcium 44.4 18 0.00062 28.1 3.4 38 12-49 1-43 (156)
205 4b9w_A TDRD1, tudor domain-con 44.3 61 0.0021 28.2 7.2 56 208-273 64-119 (201)
206 2bl0_C Myosin regulatory light 43.9 21 0.0007 27.2 3.6 35 15-49 1-38 (142)
207 2ee1_A Chromodomain helicase-D 43.3 7.1 0.00024 29.8 0.9 39 153-191 9-47 (64)
208 2aao_A CDPK, calcium-dependent 43.1 30 0.001 27.0 4.5 37 13-49 20-59 (166)
209 1qp6_A Protein (alpha2D); de n 42.4 10 0.00035 26.0 1.4 29 18-47 2-30 (35)
210 3dtp_E RLC, myosin regulatory 42.3 28 0.00097 28.9 4.5 50 12-69 49-101 (196)
211 1top_A Troponin C; contractIle 41.9 18 0.00061 28.0 3.0 38 12-49 12-52 (162)
212 2llk_A Cyclin-D-binding MYB-li 41.8 53 0.0018 25.4 5.6 42 10-67 22-63 (73)
213 1s6c_A KV4 potassium channel-i 40.6 38 0.0013 27.1 4.9 37 12-48 13-50 (183)
214 2f2o_A Calmodulin fused with c 40.4 29 0.001 27.5 4.2 38 12-49 3-43 (179)
215 2rn7_A IS629 ORFA; helix, all 38.6 41 0.0014 25.9 4.6 48 12-69 5-53 (108)
216 1jba_A GCAP-2, protein (guanyl 38.6 26 0.00088 28.9 3.7 48 1-48 1-54 (204)
217 4b9x_A TDRD1, tudor domain-con 37.6 65 0.0022 28.6 6.3 52 208-269 64-115 (226)
218 2dig_A Lamin-B receptor; tudor 36.7 68 0.0023 25.2 5.5 51 209-269 12-62 (68)
219 3e9g_A Chromatin modification- 35.2 20 0.00068 31.3 2.5 21 172-192 75-95 (130)
220 2equ_A PHD finger protein 20-l 35.2 24 0.00081 27.5 2.7 30 146-181 17-46 (74)
221 2lvv_A Flagellar calcium-bindi 35.2 39 0.0013 28.9 4.4 48 13-68 44-95 (226)
222 3fia_A Intersectin-1; EH 1 dom 35.1 45 0.0015 28.0 4.6 63 10-72 23-99 (121)
223 2r58_A Polycomb protein SCM; M 34.8 25 0.00084 33.3 3.3 45 143-192 148-192 (265)
224 3ask_A E3 ubiquitin-protein li 34.3 58 0.002 30.4 5.6 77 211-289 4-83 (226)
225 2kn2_A Calmodulin; S MAPK phos 34.0 51 0.0017 23.7 4.2 35 14-48 3-40 (92)
226 2ccm_A Calexcitin; EF hand, ca 33.7 63 0.0021 26.0 5.1 34 13-46 5-42 (191)
227 2eqj_A Metal-response element- 33.5 53 0.0018 25.6 4.4 32 205-239 9-40 (66)
228 2kgr_A Intersectin-1; structur 32.7 50 0.0017 25.9 4.3 39 11-49 5-46 (111)
229 1iq3_A Ralbp1-interacting prot 32.1 14 0.00046 29.5 0.9 42 8-49 10-54 (110)
230 2jn6_A Protein CGL2762, transp 31.8 66 0.0022 24.3 4.7 43 11-68 3-45 (97)
231 2x48_A CAG38821; archeal virus 31.8 49 0.0017 22.4 3.6 39 13-68 13-53 (55)
232 3kz3_A Repressor protein CI; f 31.6 78 0.0027 22.8 4.9 46 14-72 2-51 (80)
233 1qv0_A Obelin, OBL; photoprote 31.1 72 0.0025 25.5 5.1 40 11-50 10-58 (195)
234 2biv_A SCML2 protein, sex COMB 30.5 30 0.001 32.2 3.1 46 142-192 175-220 (243)
235 3dlm_A Histone-lysine N-methyl 30.4 74 0.0025 29.6 5.6 95 151-260 20-114 (213)
236 3i9v_2 NADH-quinone oxidoreduc 29.9 30 0.001 30.7 2.8 19 32-50 39-57 (181)
237 2iw5_B Protein corest, REST co 29.8 90 0.0031 29.5 6.1 54 3-71 124-178 (235)
238 2a6c_A Helix-turn-helix motif; 29.4 95 0.0033 22.7 5.2 55 1-71 1-56 (83)
239 2ofy_A Putative XRE-family tra 29.3 26 0.00088 25.5 1.9 47 11-71 3-52 (86)
240 1g8i_A Frequenin, neuronal cal 29.2 61 0.0021 25.9 4.3 36 11-46 19-55 (190)
241 3pm8_A PFCDPK2, calcium-depend 28.9 68 0.0023 26.7 4.8 48 13-68 50-100 (197)
242 2obh_A Centrin-2; DNA repair c 28.6 37 0.0013 26.4 2.9 35 15-49 1-38 (143)
243 1eh2_A EPS15; calcium binding, 28.5 68 0.0023 25.4 4.4 39 12-50 7-47 (106)
244 2cu7_A KIAA1915 protein; nucle 28.5 1.5E+02 0.0052 21.9 6.2 49 10-73 8-56 (72)
245 2r0q_C Putative transposon TN5 28.2 36 0.0012 29.5 3.0 45 15-73 158-202 (209)
246 2biv_A SCML2 protein, sex COMB 28.1 29 0.00099 32.3 2.5 99 143-256 67-208 (243)
247 3e9g_A Chromatin modification- 27.0 45 0.0015 29.1 3.3 24 209-236 7-30 (130)
248 2r58_A Polycomb protein SCM; M 26.7 31 0.0011 32.6 2.5 101 143-258 39-182 (265)
249 2eqk_A Tudor domain-containing 26.6 36 0.0012 27.6 2.4 47 144-198 27-73 (85)
250 3bdl_A Staphylococcal nuclease 26.4 93 0.0032 31.5 6.0 54 208-272 410-463 (570)
251 2eqk_A Tudor domain-containing 26.4 95 0.0032 25.1 4.9 57 209-279 21-78 (85)
252 1s1e_A KV channel interacting 25.4 1E+02 0.0034 26.4 5.3 36 12-47 46-82 (224)
253 1nya_A Calerythrin; EF-hand, m 25.1 83 0.0028 24.5 4.3 37 14-50 1-44 (176)
254 2bec_A Calcineurin B homologou 24.5 49 0.0017 27.1 3.0 38 11-49 20-60 (202)
255 2sas_A Sarcoplasmic calcium-bi 24.4 65 0.0022 25.3 3.6 34 14-47 2-39 (185)
256 3cs1_A Flagellar calcium-bindi 24.4 1.1E+02 0.0039 25.7 5.4 38 12-49 40-81 (219)
257 2cqr_A RSGI RUH-043, DNAJ homo 23.5 1.4E+02 0.0046 23.0 5.1 47 11-69 18-65 (73)
258 2k0m_A Uncharacterized protein 23.4 59 0.002 26.9 3.3 32 233-267 63-94 (104)
259 4b2u_A S67; toxin, ICK; NMR {S 23.4 35 0.0012 23.5 1.6 22 205-229 9-32 (36)
260 2r1j_L Repressor protein C2; p 23.1 42 0.0014 22.7 2.0 23 39-71 21-43 (68)
261 3ntk_A Maternal protein tudor; 22.8 1.4E+02 0.0047 25.4 5.6 43 209-261 47-90 (169)
262 2xi8_A Putative transcription 22.2 45 0.0015 22.5 2.0 23 39-71 17-39 (66)
263 1x3p_A Cpsrp43; chromo-2 domai 22.1 19 0.00065 26.2 0.0 34 157-192 2-36 (54)
264 1yx7_A Calsensin, LAN3-6 antig 22.0 57 0.0019 22.8 2.6 44 16-65 3-49 (83)
265 1je8_A Nitrate/nitrite respons 22.0 82 0.0028 23.5 3.6 51 8-76 16-66 (82)
266 3h6z_A Polycomb protein SFMBT; 21.6 52 0.0018 33.3 3.1 46 142-192 380-425 (447)
267 2ggz_A Guanylyl cyclase-activa 21.5 7.9 0.00027 32.6 -2.5 49 1-49 3-52 (211)
268 3k21_A PFCDPK3, calcium-depend 21.5 1E+02 0.0035 25.4 4.4 37 13-49 45-84 (191)
269 2dg7_A Putative transcriptiona 21.5 26 0.00089 28.2 0.7 50 1-70 1-51 (195)
270 2bl0_B Myosin regulatory light 21.3 67 0.0023 24.2 3.0 47 14-68 2-48 (145)
271 1b72_A Protein (homeobox prote 21.3 20 0.00069 28.1 0.0 20 57-76 4-23 (97)
272 1zug_A Phage 434 CRO protein; 20.9 49 0.0017 22.7 2.0 24 39-72 19-42 (71)
273 3bru_A Regulatory protein, TET 20.9 58 0.002 26.4 2.7 47 12-71 28-75 (222)
274 1p4w_A RCSB; solution structur 20.7 1.2E+02 0.0042 23.9 4.5 47 10-74 31-77 (99)
275 3bs3_A Putative DNA-binding pr 20.3 53 0.0018 22.9 2.1 23 39-71 26-48 (76)
276 2epb_A Chromodomain-helicase-D 20.1 28 0.00094 26.4 0.6 40 152-191 8-52 (68)
No 1
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=1.4e-18 Score=139.68 Aligned_cols=75 Identities=24% Similarity=0.364 Sum_probs=69.7
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC-----CCccccCCcccccchhHhhhhcchhhHhhhc
Q 016887 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFS-----ESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (381)
Q Consensus 4 Pps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfn-----lS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~ 78 (381)
.+..++.|+.||++||..||+.|+. ++||+...|++||+.|| .+.+++|+..|+++||++||||||+|+|++.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~--~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNE--NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 4466899999999999999999999 79999999999999999 7778889999999999999999999999988
Q ss_pred cC
Q 016887 79 IK 80 (381)
Q Consensus 79 ~~ 80 (381)
..
T Consensus 82 ~~ 83 (95)
T 2cuf_A 82 NI 83 (95)
T ss_dssp HC
T ss_pred hc
Confidence 64
No 2
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=4e-18 Score=129.23 Aligned_cols=66 Identities=20% Similarity=0.336 Sum_probs=60.6
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 2 GRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 2 GrPps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
|.+...+++|+.||.+|+..||+.|.. ++||+...++.||..+||++ .||++||||||+|+|++..
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDA--NAYPKDDEFEQLSNLLNLPT----------RVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHSCCCH----------HHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCH----------HHhHHhhHhhhHHHhhccc
Confidence 345677999999999999999999999 79999999999999999985 9999999999999998764
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.5e-18 Score=132.66 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=57.9
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
..+++|+.||..|+..||+.|.. ++||+...|++||..++|++ .||++||||||+|+|+...
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEK--QKYLSTPDRIDLAESLGLSQ----------LQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCH----------HHeeeccHHHHHHhhcccC
Confidence 35889999999999999999999 79999999999999999975 9999999999999999764
No 4
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=4.4e-18 Score=129.50 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=58.9
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 4 Pps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
....+++|+.||..|+..||+.|+. ++||+...+++||..++|++ .||++||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAA--NKFITKDKRRKISAATSLSE----------RQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCCH----------HHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCCCH----------HHhhHhhHhHHHHhcccCC
Confidence 3456899999999999999999998 79999999999999999975 9999999999999998763
No 5
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.73 E-value=7.1e-18 Score=129.76 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=62.7
Q ss_pred CCCCCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhccC
Q 016887 1 MGRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (381)
Q Consensus 1 mGrPps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~~ 80 (381)
|......++.|+.||..|+..||+.|.. ++||+...+++||..+||++ .||++||||||+|+|+...+
T Consensus 1 ~s~~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~kk~~~~ 68 (73)
T 2l7z_A 1 MSHMLEGRKKRVPYTKVQLKELEREYAT--NKFITKDKRRRISATTNLSE----------RQVTIWFQNRRVKEKKVINK 68 (73)
T ss_dssp CCSSSCCCCCCCCSCHHHHHHHHHHHHH--TSCCCHHHHHHHHHHHTSCS----------HHHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhh--CCCcCHHHHHHHHHHHCCCH----------HHHHHHHHHHhHHHHHHhcc
Confidence 5567788999999999999999999999 79999999999999999985 99999999999999997753
No 6
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=6.6e-18 Score=128.28 Aligned_cols=62 Identities=26% Similarity=0.336 Sum_probs=58.2
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
..+++|+.||.+|+..||+.|+. ++||+...+++||..++|++ .||++||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE--TKYPDVGTREQLARKVHLRE----------EKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCCCH----------HHeehccccccccccccCC
Confidence 46889999999999999999999 79999999999999999975 9999999999999999764
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.73 E-value=5.7e-18 Score=131.22 Aligned_cols=66 Identities=27% Similarity=0.348 Sum_probs=61.4
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 2 GRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 2 GrPps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
|.|+..+++|+.||..|+..||+.|.. ++||+...+++||..+||++ .||++||||||+|+|+...
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQ--QRYLSAPEREHLASLIRLTP----------TQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHhCCCH----------HHHHHHhHHhhcchhhhhc
Confidence 567788999999999999999999998 79999999999999999975 9999999999999998764
No 8
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=4e-18 Score=131.69 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=59.0
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 4 Pps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
|...+++|+.||.+|+..||+.|.. ++||+...+++||..++|++ .||++||||||+|+|++..
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLL--DSNPTRKMLDHIAHEVGLKK----------RVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHH--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCcCH----------HHhHHHhHHHHHhHhhhcc
Confidence 4456889999999999999999999 79999999999999999975 9999999999999999764
No 9
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-18 Score=129.43 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=59.5
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 3 RPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 3 rPps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
..+..+++|+.||..|+..||+.|.. ++||+...+++||..++|++ .||++||||||+++|+...
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 3 SGSSGRKPRTIYSSFQLAALQRRFQK--TQYLALPERAELAASLGLTQ----------TQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp SCCCCCCSSCSSCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHSSCCH----------HHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHcC--CCCCCHHHHHHHHHHhCCCH----------HHHHHHHHHHhhhhcccCC
Confidence 34566899999999999999999988 79999999999999999975 9999999999999998764
No 10
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=1.1e-17 Score=127.29 Aligned_cols=63 Identities=30% Similarity=0.366 Sum_probs=58.6
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 5 PSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 5 ps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
+..+++|++||.+|+..||+.|.. ++||+...+++||..++|++ .||++||||||+|+|+...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFET--QKYLSPPERKRLAKMLQLSE----------RQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHCCCH----------HHhhHhhHhhHhhcCCCCC
Confidence 456889999999999999999998 79999999999999999975 9999999999999999764
No 11
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.72 E-value=6.5e-18 Score=125.28 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=52.2
Q ss_pred CCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhh
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kk 76 (381)
.+++|+.||..|+..||+.|+. ++||+...+++||..+||++ .||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE--NRYLTERRRQQLSSELGLNE----------AQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCcCH----------HHHHHHhhhhcccccc
Confidence 5789999999999999999998 79999999999999999985 9999999999999987
No 12
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.72 E-value=7.7e-18 Score=125.85 Aligned_cols=61 Identities=28% Similarity=0.339 Sum_probs=55.2
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhc
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~ 78 (381)
+.+++|+.||..|+..||+.|.. ++||+...+++||..+||++ .||++||||||+|+|+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLF--NKYISRPRRVELAVMLNLTE----------RHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCcCH----------HHhhHHHHhhhhhhhhhc
Confidence 35789999999999999999998 79999999999999999985 999999999999999864
No 13
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=8.5e-18 Score=127.43 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=59.0
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 4 Pps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
+...+++|+.||.+|+..||+.|+. ++||+...+++||..+||++ .||++||||||+|+|++..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDI--NNSPSEEQIKEMADKSGLPQ----------KVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHH--CSSCCTTHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHhCCCH----------HHHHHHhhhhhHHHhhhcc
Confidence 3456899999999999999999998 79999999999999999985 9999999999999998763
No 14
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=2.1e-17 Score=128.58 Aligned_cols=65 Identities=22% Similarity=0.313 Sum_probs=59.7
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhccC
Q 016887 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (381)
Q Consensus 4 Pps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~~ 80 (381)
....+++|+.||.+|+..||+.|+. ++||+...+++||..++|++ .||++||||||+|+|++...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAK--TRYPDIFMREEVALKINLPE----------SRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCcCH----------HHhhhhhHHHhHHhhHHHHc
Confidence 3456899999999999999999999 79999999999999999975 99999999999999998753
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1e-17 Score=122.63 Aligned_cols=57 Identities=25% Similarity=0.335 Sum_probs=54.2
Q ss_pred CCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhh
Q 016887 8 GGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (381)
Q Consensus 8 ~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kk 76 (381)
+++|+.||.+|+..||+.|.. ++||+...+.+||..+||++ .||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ--KQYLSIAERAEFSSSLSLTE----------TQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHHCcCH----------HHhhhhhhHhhhhhcc
Confidence 578999999999999999998 79999999999999999985 9999999999999987
No 16
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.71 E-value=1.1e-17 Score=134.58 Aligned_cols=65 Identities=29% Similarity=0.438 Sum_probs=60.5
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 3 RPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 3 rPps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
.|+..+++|+.||.+|+..||+.|.. ++||+...|.+||.++||++ .||++||||||+|+|++..
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHK--QKYLASAERAALARGLKMTD----------AQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHTTTCCH----------HHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCh----------hhcccccHhhhhhhhhhhH
Confidence 45567899999999999999999999 79999999999999999985 9999999999999999875
No 17
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=130.48 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=58.2
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhc
Q 016887 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (381)
Q Consensus 4 Pps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~ 78 (381)
|...+++|+.||..|+..||+.|.. ++||+...|..||..+||++ .||++||||||+|+|++.
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQR--QKYLSLQQMQELSNILNLSY----------KQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHH--SSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHcCCCH----------HHHHHHHHHHHHHHHHHh
Confidence 3456889999999999999999998 79999999999999999975 999999999999999865
No 18
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.70 E-value=1.1e-17 Score=124.50 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=51.8
Q ss_pred CCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhh
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk 77 (381)
.+++|+.||..|+..||+.|.. ++||+...+.+||..+||++ .||++||||||+|+|++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK--QKYLSLQQMQELSSILNLSY----------KQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCH----------HHhhHHhHHhhcchhhc
Confidence 4688999999999999999998 79999999999999999985 99999999999999885
No 19
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=128.23 Aligned_cols=63 Identities=24% Similarity=0.309 Sum_probs=58.7
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 5 PSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 5 ps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
...+++|+.||.+|+..||+.|+. ++||+...++.||..++|++ .||++||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAI--NHNPDAKDLKQLAQKTGLTK----------RVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCCH----------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCCCH----------HHhhHccHHHHHHHHHHHH
Confidence 456899999999999999999998 79999999999999999975 9999999999999999874
No 20
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.5e-17 Score=129.62 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=59.0
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 4 Pps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
.+..+++|+.||..|+..||+.|.. ++||+...++.||..++|++ .||++||||||+|+|++..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFER--THYPDVFARERLAAKIDLPE----------ARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCCCH----------HHhhHHHHHHHHHHHHHhh
Confidence 3456899999999999999999998 79999999999999999975 9999999999999999764
No 21
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.70 E-value=1.2e-17 Score=123.56 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=49.5
Q ss_pred CCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhc
Q 016887 9 GPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (381)
Q Consensus 9 ~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~ 78 (381)
++|+.||.+|+..||+.|.. ++||+...+++||.++||++ .||++||||||+|+|+..
T Consensus 1 g~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 1 GSHMTFTSFQLEELEKAFSR--THYPDVFTREELAMKIGLTE----------ARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ----CCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHC---
T ss_pred CCCcccCHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHCcCH----------HHHHHHhhhhhhhhHhhc
Confidence 47899999999999999998 79999999999999999985 999999999999999864
No 22
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-17 Score=129.92 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=58.2
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhccC
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHN----AMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n----~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~~ 80 (381)
..++.|+.||.+|+..||+.|+. + +||+...+++||.++||++ .||++||||||+|+|+....
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~~~~~yp~~~~r~~La~~lgL~~----------~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDN--GMTSLGSVCREKIEAVATELNVDC----------EIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTT--TTTCCSHHHHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh--CCCCCCCcCHHHHHHHHHHhCCCH----------HHhhHhHHHHHHHHhhccCC
Confidence 45889999999999999999988 7 9999999999999999975 99999999999999997643
No 23
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.69 E-value=2.1e-17 Score=122.16 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=54.4
Q ss_pred CCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhh
Q 016887 8 GGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (381)
Q Consensus 8 ~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk 77 (381)
+++|+.||.+|+..||+.|.. ++||+...+++||..+||++ .||++||||||+++|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK--ENYVSRPRRCELAAQLNLPE----------STIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHCcCH----------HHHHHhhHHHHhHhhcc
Confidence 578999999999999999998 79999999999999999985 99999999999999875
No 24
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=3.4e-17 Score=125.31 Aligned_cols=63 Identities=17% Similarity=0.328 Sum_probs=58.6
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 5 PSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 5 ps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
+..++.|+.||.+|+..||+.|.. ++||+...+++||..++|++ .||++||||||+|+|+...
T Consensus 4 ~~~~~~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 4 PDSFGIRAKKTKEQLAELKVSYLK--NQFPHDSEIIRLMKITGLTK----------GEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCCTTCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCcCH----------HHeeeCChhHhHHHHhhCc
Confidence 456789999999999999999998 79999999999999999985 9999999999999998764
No 25
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.5e-17 Score=126.68 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=58.6
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 4 Pps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
|...+..|.+||.+||.+||+.|.. ++||+...+++||..++|++ .||++||||||+++|++..
T Consensus 4 p~~~~~kr~~~t~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 4 GSSGPTKYKERAPEQLRALESSFAQ--NPLPLDEELDRLRSETKMTR----------REIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCSSCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHTTHHHHSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCCCH----------HHhhHhhHHHHHHHHHhhh
Confidence 4445778899999999999999999 79999999999999999985 9999999999999999774
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.69 E-value=2.5e-17 Score=125.17 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=57.2
Q ss_pred CCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
.++.|+.||..|+..||+.|.. ++||+...+++||..+||++ .||++||||||+++|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF--NRYLTRRRRIEIAHALSLTE----------RQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH--CSSCCTTHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc--CCCCCHHHHHHHHHHHCcCH----------hhhhHHhHHHHhHHhHhcc
Confidence 3678999999999999999998 79999999999999999985 9999999999999999874
No 27
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=3.2e-17 Score=125.90 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCCCccccCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 7 NGGPAFRFNPAEVTEMEGILQ-EHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~-e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
+++.|+.||.+|+..||+.|. . ++||+...+++||..+||++ .||++||||||+++|++..
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~--~~yp~~~~r~~LA~~~~l~~----------~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKV--NKHPDPTTLCLIAAEAGLTE----------EQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHT--TSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHHHhcc
Confidence 578899999999999999998 5 69999999999999999985 9999999999999999874
No 28
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.69 E-value=2.5e-17 Score=123.86 Aligned_cols=61 Identities=23% Similarity=0.327 Sum_probs=57.0
Q ss_pred CCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
.+++|+.||.+|+..||+.|.. ++||+...++.||..+||++ .||++||||||+++|++..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA--NPRPDALMKEQLVEMTGLSP----------RVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHHCcCH----------HHHHHHhHHHHHHHhHHhh
Confidence 4789999999999999999999 79999999999999999985 9999999999999998763
No 29
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.9e-17 Score=129.79 Aligned_cols=62 Identities=18% Similarity=0.340 Sum_probs=57.3
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
++|..+.+||.+|+.+||+.|.. ++||+..+|++||+.+||++ +||++||||||+|+|+..-
T Consensus 2 ~~g~~r~kfT~~Ql~~Le~~F~~--~~YPs~~er~~LA~~tgLte----------~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 2 SSGSSGKRKTKEQLAILKSFFLQ--CQWARREDYQKLEQITGLPR----------PEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCSCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCCH----------HHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHCcCH----------HHhhHHhHhhHHHHHHHHH
Confidence 45778889999999999999999 79999999999999999985 9999999999999998763
No 30
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.68 E-value=2.9e-17 Score=128.79 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=53.5
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhc
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~ 78 (381)
..++.|+.||..|+..||+.|.. ++||+...|++||.++||++ .||++||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHT--NHYLTRRRRIEMAHALSLTE----------RQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCH----------HHHHHHhHHhhhhhhhhc
Confidence 45789999999999999999999 79999999999999999975 999999999999999864
No 31
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.68 E-value=2.7e-17 Score=129.69 Aligned_cols=60 Identities=8% Similarity=0.147 Sum_probs=55.4
Q ss_pred CCCCccccCHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhh
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEHH--NAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~~--n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kk 76 (381)
.++.||.||.+|+.+||+.|+..+ ++||+...|++||..++|++ +||++||||||+|+|+
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~----------~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPR----------QVLKVWLHNNKHSGPS 78 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCH----------HHHHHHHHHHSSSSSC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCc----------ccccCCccccCcCCCC
Confidence 588999999999999999999843 59999999999999999985 9999999999999876
No 32
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.68 E-value=3.4e-17 Score=120.06 Aligned_cols=54 Identities=30% Similarity=0.386 Sum_probs=50.0
Q ss_pred cccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhh
Q 016887 12 FRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk 77 (381)
|.||.+|+..||+.|.. ++||+...|.+||.++||++ .||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR--QKYLASAERAALAKALRMTD----------AQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh--cCCcCHHHHHHHHHHhCcCH----------HHhhHhhHHhhhhhccc
Confidence 68999999999999998 79999999999999999985 99999999999999986
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.68 E-value=3.7e-17 Score=118.64 Aligned_cols=57 Identities=32% Similarity=0.412 Sum_probs=53.6
Q ss_pred CCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHh
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 75 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~K 75 (381)
.+++|+.||..|+..||+.|.. ++||+...+.+||..+||++ .||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ--QRYLSAPERDQLASVLKLTS----------TQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCcCH----------HHHHHhhHHhhccCC
Confidence 4688999999999999999998 79999999999999999985 999999999999975
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.68 E-value=2.9e-17 Score=130.11 Aligned_cols=61 Identities=21% Similarity=0.315 Sum_probs=54.4
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhc
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~ 78 (381)
..+++|+.||..|+..||+.|+. ++||+...|++||..+||++ .||++||||||+|+|++.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF--NRYLTRRRRIEIAHALSLTE----------RQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCcCH----------HHhhHHhHHHHHHhHhhc
Confidence 45889999999999999999998 79999999999999999985 999999999999999864
No 35
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.68 E-value=4.7e-17 Score=123.42 Aligned_cols=61 Identities=28% Similarity=0.377 Sum_probs=57.0
Q ss_pred CCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
.+++|+.||..|+..||+.|.. ++||+...+.+||..+||++ .||++||||||+++|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ--QKYLSAPEREHLASMIHLTP----------TQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCH----------HHhHHHhHHHhhhhhhhhh
Confidence 3678999999999999999998 79999999999999999985 9999999999999999764
No 36
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.68 E-value=5.1e-17 Score=125.90 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=56.9
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhc
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~ 78 (381)
..+++|+.||..|+.+||+.|.. ++||+...+++||..+||++ .||++||||||+++|+..
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLF--NMYLTRDRRYEVARLLNLTE----------RQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999998 79999999999999999985 999999999999999865
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.68 E-value=4.7e-17 Score=122.66 Aligned_cols=61 Identities=26% Similarity=0.481 Sum_probs=57.0
Q ss_pred CCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
.+++|+.||++|+..||+.|.. ++||+...++.||..+||++ .||++||||||+|+|++..
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRV--NCYPGIDILEDLAQKLNLEL----------DRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCcCH----------HHhhHhhHhHHHHHhHhch
Confidence 3689999999999999999988 79999999999999999985 9999999999999998764
No 38
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.67 E-value=6e-17 Score=126.32 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=57.6
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
..++.|+.||..|+..||+.|.. ++||+...++.||..+||++ .||++||||||+++|++..
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFER--TQYPDIYTREELAQRTNLTE----------ARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHhhhhhhhcc
Confidence 35889999999999999999998 79999999999999999975 9999999999999998763
No 39
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.67 E-value=4.5e-17 Score=123.51 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=56.7
Q ss_pred CCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 8 GGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 8 ~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
+++|+.||..|+..||+.|.. ++||+...+..||..+||++ .||++||||||+++|+...
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 3 RRTRTTFTSSQIAELEQHFLQ--GRYLTAPRLADLSAKLALGT----------AQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp SCCSCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCcCH----------HHhhHhhHHHHHHHHHHhc
Confidence 679999999999999999998 79999999999999999985 9999999999999999774
No 40
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=121.72 Aligned_cols=62 Identities=24% Similarity=0.327 Sum_probs=57.7
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
..++.|+.||..|+..||+.|.. +.||+...+++||..+||++ .||++||||||+|+|++..
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQK--THYPDVYAREQLAMRTDLTE----------ARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCH----------HHHHHHhHHHHHHHHHHHh
Confidence 45788999999999999999998 79999999999999999985 9999999999999999764
No 41
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.67 E-value=2.3e-17 Score=124.88 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=57.4
Q ss_pred CCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
.+++|+.||..|+..||+.|.. ++||+...+.+||..+||++ .||++||||||+|+|++..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~La~~l~l~~----------~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR--NRYPDMSTREEIAVWTNLTE----------ARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT--CSSCCTTTTTHHHHHTTSCH----------HHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHhHHHHHHhh
Confidence 5789999999999999999998 79999999999999999985 9999999999999999774
No 42
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=9.9e-17 Score=122.63 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=55.8
Q ss_pred CCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 8 GGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 8 ~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
.+.|+.||..|+..||+.|... ++||+...+++||..+||++ .||++||||||+++|++..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~-~~yp~~~~r~~LA~~l~l~~----------~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKV-NKHPDPTTLCLIAAEAGLTE----------EQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSS-CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHcc-CCCCCHHHHHHHHHHHCcCH----------HHhhHHhHHHHHHHhhhcc
Confidence 4689999999999999999842 69999999999999999985 9999999999999999874
No 43
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=1.8e-16 Score=121.19 Aligned_cols=67 Identities=19% Similarity=0.153 Sum_probs=60.3
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 3 RPPSNGGPAFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 3 rPps~~~pRtrFT~~QI~eLEk~F~e-~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
.++..++.|+.||..|+..||+.|.+ ..++||+...+++||..+||++ .||++||||||+++|+.+.
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~----------~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTL----------LQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCH----------HHHHHHhHHHHhhcccccc
Confidence 35567899999999999999999987 3479999999999999999985 9999999999999998764
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=7.6e-17 Score=129.97 Aligned_cols=62 Identities=31% Similarity=0.383 Sum_probs=55.0
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
..+++|+.||..|+..||+.|.. ++||+...|++||..+||++ .||++||||||+|+|++..
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~l~~----------~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF--NKYLSRARRVEIAATLELNE----------TQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHhCCCH----------HHhHHHHHHHhHHHhHHhc
Confidence 35788999999999999999998 79999999999999999985 9999999999999998763
No 45
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.65 E-value=8.7e-17 Score=118.74 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=47.3
Q ss_pred CCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHh
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 75 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~K 75 (381)
.+++|+.||.+|+..||..|.. ++||+...++.||..+||++ .||++||||||+++|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~--~~yp~~~~r~~La~~~~l~~----------~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRR--KQSLNSKEKEEVAKKCGITP----------LQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHh--CCCcCHHHHHHHHHHHCcCH----------HHHHHHHHHHHhccC
Confidence 5788999999999999999998 69999999999999999985 999999999999875
No 46
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.65 E-value=7.1e-17 Score=127.86 Aligned_cols=59 Identities=8% Similarity=0.079 Sum_probs=53.7
Q ss_pred CCCCccccCHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhh
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEHH---NAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~~---n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kk 76 (381)
.++.||.||.+|+.+|| .|.++. ++||+...|++||..++|++ .||++||||||+|+|+
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e----------~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRR----------QVLKIWMHNNKNSGPS 78 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCH----------HHHHHHHHTTSCCSCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCc----------CcccccccccccCCCC
Confidence 47899999999999999 798831 58999999999999999985 9999999999999875
No 47
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.65 E-value=1e-16 Score=129.19 Aligned_cols=61 Identities=20% Similarity=0.369 Sum_probs=55.3
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhc
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~ 78 (381)
..++.|++||..|+..||+.|+. ++||+...|++||.+++|++ .||++||||||+|+|+..
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVR--TQWPSPEEYDKLAKESGLAR----------TDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCccCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCCCH----------HHeeecchhhhhHhhhhc
Confidence 34688999999999999999998 79999999999999999985 999999999999999865
No 48
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=3.9e-16 Score=126.67 Aligned_cols=59 Identities=10% Similarity=0.155 Sum_probs=54.0
Q ss_pred CCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 9 GPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 9 ~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
...-+||.+||.+||+.|.. ++||+...|++||..++|++ +||++||||||+|||++..
T Consensus 13 ~k~k~~t~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~lgLte----------~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASFLN--SSVLTDEELNRLRAQTKLTR----------REIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHTCCCH----------HHHHHHHHHHHHHHHSCCS
T ss_pred hhhccCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCcCh----------HHCeecccccchHHHHHHH
Confidence 34448999999999999999 79999999999999999975 9999999999999998764
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=123.18 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=55.0
Q ss_pred CCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 9 GPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 9 ~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
..|++||.+||..||+.|.. ++||+...+++||..++|++ .||++||||||+|+|++..
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~--~~yp~~~~r~~La~~~~l~~----------~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCR--NQFPGQSEVEHLTKVTGLST----------REVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH--SSSCCSHHHHHHHHHHCCCH----------HHHHHHHHHHHHHSSSCCS
T ss_pred CCCccCCHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCCCh----------HHhhHHhHHHhHHHHHhcc
Confidence 35899999999999999998 79999999999999999985 9999999999999998764
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.63 E-value=4.2e-16 Score=119.17 Aligned_cols=63 Identities=27% Similarity=0.309 Sum_probs=56.6
Q ss_pred CCCccccCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhccC
Q 016887 8 GGPAFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (381)
Q Consensus 8 ~~pRtrFT~~QI~eLEk~F~e-~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~~ 80 (381)
++.|+.||..|+..||+.|.+ ..++||+...++.||..+||++ +||++||||||+++|+...+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~----------~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITV----------SQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCH----------HHHHHHHHHHHhhccccccc
Confidence 678999999999999999942 1379999999999999999985 99999999999999997754
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=1.9e-16 Score=118.15 Aligned_cols=62 Identities=26% Similarity=0.303 Sum_probs=55.1
Q ss_pred CCCCCccccCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhh
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e-~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk 77 (381)
+.++.|+.||..|+..||+.|.+ ..++||+...+++||..+||++ .||++||||||+++|+.
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~----------~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITV----------SQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHTTTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHhccC
Confidence 35789999999999999999942 2379999999999999999985 99999999999999863
No 52
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=4.2e-16 Score=130.05 Aligned_cols=76 Identities=30% Similarity=0.475 Sum_probs=65.1
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCC--------Cccc---cCCcccccchhHhhhhcc
Q 016887 2 GRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSE--------SPER---KGKIMVQMKQVWNWFQNR 70 (381)
Q Consensus 2 GrPps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnl--------S~~R---aGk~~Vq~kQVk~WFQNR 70 (381)
|..+..++.||.||++|+.+||+.|+. ++||+...|++||+.+|. ++.- -|+-.|++.||++|||||
T Consensus 1 ~~~~~~Rr~Rt~ft~~ql~~Le~~F~~--~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNR 78 (102)
T 2da6_A 1 GSSGSSGRNRFKWGPASQQILYQAYDR--QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 78 (102)
T ss_dssp CTTCCSCCCCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecch
Confidence 788899999999999999999999999 799999999999999942 1111 144567889999999999
Q ss_pred hhhHhhhcc
Q 016887 71 RYAIRAKSI 79 (381)
Q Consensus 71 R~K~Kkk~~ 79 (381)
|+++|++..
T Consensus 79 R~k~kr~~~ 87 (102)
T 2da6_A 79 RKEEAFRQK 87 (102)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhH
Confidence 999998874
No 53
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.61 E-value=4.4e-16 Score=122.42 Aligned_cols=63 Identities=27% Similarity=0.309 Sum_probs=55.9
Q ss_pred CCCccccCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhccC
Q 016887 8 GGPAFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (381)
Q Consensus 8 ~~pRtrFT~~QI~eLEk~F~e-~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~~ 80 (381)
++.|+.||..|+..||+.|.+ ..++||+...+++||..+||++ .||++||||||+|+|+...+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~----------~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITV----------SQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHhhhcccc
Confidence 688999999999999999942 1279999999999999999975 99999999999999998753
No 54
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=119.86 Aligned_cols=66 Identities=26% Similarity=0.271 Sum_probs=59.4
Q ss_pred CCCCCCccccCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhccC
Q 016887 5 PSNGGPAFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIK 80 (381)
Q Consensus 5 ps~~~pRtrFT~~QI~eLEk~F~e-~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~~ 80 (381)
+..+++|+.||.+|+..||+.|.+ ..++||+..++++||..+||++ +||++||||||+++|+.+..
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~----------~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSL----------LQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCH----------HHhhHHhhhhHhhhcHHHHH
Confidence 456899999999999999999987 2469999999999999999985 99999999999999988753
No 55
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.61 E-value=4.1e-16 Score=134.65 Aligned_cols=64 Identities=22% Similarity=0.297 Sum_probs=54.7
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhh
Q 016887 2 GRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (381)
Q Consensus 2 GrPps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk 77 (381)
|.+...+++|+.||..|+..||+.|.. ++||+...|..||.++||++ .||++||||||+|+|++
T Consensus 82 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 82 GANERKRKRRTTISIAAKDALERHFGE--HSKPSSQEIMRMAEELNLEK----------EVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCcCccHHHHHHHHHHHHH--cCCCCHHHHHHHHHHhCCCh----------hhchhhhHhhhhhhhcc
Confidence 444556889999999999999999999 79999999999999999975 99999999999999885
No 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=121.42 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=53.9
Q ss_pred CCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 9 GPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 9 ~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
..+-+||.+||.+||+.|.. ++||+...|++||..++|++ +||++||||||+|+|++..
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~--~~yp~~~~r~~La~~~~l~~----------~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLK--SSFPTQAELDRLRVETKLSR----------REIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHTSCS
T ss_pred cccccCCHHHHHHHHHHHcc--CCCCCHHHHHHHHHHhCCCH----------HhccHhhHhHHHHHHHHhH
Confidence 34556999999999999999 79999999999999999975 9999999999999998774
No 57
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=2.6e-16 Score=121.94 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=54.3
Q ss_pred CCCccccCHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhc
Q 016887 8 GGPAFRFNPAEVTEMEGIL-QEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (381)
Q Consensus 8 ~~pRtrFT~~QI~eLEk~F-~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~ 78 (381)
.+.+.+|+.+|+.+||+.| .. ++||+...|++||.++||++ .||++||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~--~~yp~~~~r~~LA~~l~l~e----------~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV--TKYPDEKRLKGLSKQLDWSV----------RKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT--CSSCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCCCh----------hhcchhhhhcccCCCCCC
Confidence 5678889999999999999 66 79999999999999999985 999999999999998755
No 58
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.60 E-value=1.1e-15 Score=112.74 Aligned_cols=57 Identities=26% Similarity=0.324 Sum_probs=52.2
Q ss_pred ccccCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhh
Q 016887 11 AFRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (381)
Q Consensus 11 RtrFT~~QI~eLEk~F~e~-~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk 77 (381)
+++||.+|+..||+.|..+ .++||+...+++||..+||++ .||++||||||+++|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~----------~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR----------IQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCH----------HHHHHHHHHHHcccccC
Confidence 6899999999999999982 259999999999999999985 99999999999999874
No 59
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=131.80 Aligned_cols=63 Identities=21% Similarity=0.521 Sum_probs=58.2
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhh
Q 016887 2 GRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (381)
Q Consensus 2 GrPps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kk 76 (381)
|.|...+++|+.||..|+..||+.|.. ++||+...|++||+++||++ +||++||||||+|+||
T Consensus 88 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 88 GEPSKKRKRRTSFTPQAIEALNAYFEK--NPLPTGQEITEMAKELNYDR----------EVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHCCCH----------HHhHHHHHHHHhccCC
Confidence 345567889999999999999999999 79999999999999999985 9999999999999986
No 60
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-15 Score=117.90 Aligned_cols=64 Identities=28% Similarity=0.392 Sum_probs=56.0
Q ss_pred CCCCCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 1 MGRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 1 mGrPps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
||-|-- .-+..|..|+.+||+.|.. ++||+...|++||.++||++ +||++||||||+|+|++..
T Consensus 1 ~~~~~~---~~~~~t~~ql~~LE~~F~~--~~yp~~~~r~~LA~~l~Lte----------~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 1 MGHHHH---HHSHMSHTQVIELERKFSH--QKYLSAPERAHLAKNLKLTE----------TQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCSSC---SCCCCCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHSCCSSS
T ss_pred CCCCCC---CCCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCh----------hheeecchhhhhhhhhhhh
Confidence 555432 2457899999999999998 79999999999999999985 9999999999999998764
No 61
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=116.14 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=54.3
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhh
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk 77 (381)
++|.++..++.+|+..||+.|.. ++||+...|++||.++||++ +||++||||||+|.++.
T Consensus 2 ~sg~~~~~p~~~Ql~~Le~~F~~--~~yp~~~~r~~LA~~l~L~e----------~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 2 SSGSSGQPPLKNLLSLLKAYYAL--NAQPSAEELSKIADSVNLPL----------DVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCSCSCCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHTCSCS
T ss_pred CCCCCCCCccHHHHHHHHHHHhc--CCCcCHHHHHHHHHHhCcCh----------hhcCcchhcccCCCCCC
Confidence 45667788899999999999988 79999999999999999985 99999999999988764
No 62
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.59 E-value=9.9e-16 Score=119.44 Aligned_cols=52 Identities=13% Similarity=0.337 Sum_probs=48.9
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhh
Q 016887 14 FNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (381)
Q Consensus 14 FT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk 77 (381)
=|.+|+.+||+.|.. ++||+..+|++||..+|||+ +||++||||||+|+|+.
T Consensus 11 ~~~~Ql~~LE~~F~~--~~YPs~~er~eLA~~tgLt~----------~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ--SQFPDDAEVYRLIEVTGLAR----------SEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHG--GGSCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCcCH----------HHhhHhcccchhhhhcc
Confidence 478999999999999 79999999999999999985 99999999999999874
No 63
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.58 E-value=1.2e-15 Score=133.17 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=53.9
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhh
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk 77 (381)
..++.|+.||..|+..||+.|.. ++||+...|+.||..+||++ .||++||||||+|+||+
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFME--NQKPTSEDITLIAEQLNMEK----------EVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHCCCh----------HHhhHhhHHhhhhhhcc
Confidence 45889999999999999999999 79999999999999999985 99999999999999985
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.58 E-value=1.2e-15 Score=134.40 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=51.6
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
..+++|+.||..|+..||+.|.. ++||+...|.+||++++|++ +||++||||||+|+|+...
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~--~~yp~~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLK--CPKPSAHEITGLADSLQLEK----------EVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCCCh----------hhhhhhhHHhhHHHhhccC
Confidence 45889999999999999999999 79999999999999999985 9999999999999999774
No 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.56 E-value=1.5e-15 Score=124.96 Aligned_cols=74 Identities=26% Similarity=0.396 Sum_probs=54.8
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC--------CCcccc---CCcccccchhHhhhhcchh
Q 016887 4 PPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFS--------ESPERK---GKIMVQMKQVWNWFQNRRY 72 (381)
Q Consensus 4 Pps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfn--------lS~~Ra---Gk~~Vq~kQVk~WFQNRR~ 72 (381)
+...++.||.||+.|+.+||+.|+. ++||+...|++||+.+| +++.-. |.-.|++.||++||||||+
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~--~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYER--QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTT--CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 3456899999999999999999999 79999999999999954 111111 2233778999999999999
Q ss_pred hHhhhcc
Q 016887 73 AIRAKSI 79 (381)
Q Consensus 73 K~Kkk~~ 79 (381)
+.|++..
T Consensus 84 k~k~k~~ 90 (99)
T 1lfb_A 84 EEAFRHK 90 (99)
T ss_dssp TTSCCC-
T ss_pred HHHHhch
Confidence 9887764
No 66
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.56 E-value=4e-15 Score=117.60 Aligned_cols=60 Identities=25% Similarity=0.288 Sum_probs=54.2
Q ss_pred CCCCccccCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhh
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~-~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kk 76 (381)
.++.|++||.+|+..||+.|..+ .++||+...++.||..+||++ +||++||||||+|+|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~----------~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR----------IQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCH----------HHHHHHHHHHHhhccC
Confidence 46789999999999999999871 249999999999999999985 9999999999999874
No 67
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.55 E-value=2.3e-15 Score=130.70 Aligned_cols=63 Identities=22% Similarity=0.374 Sum_probs=54.0
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 5 PSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 5 ps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
+..+++|+.||..|+..||+.|+. ++||+...|++||.++||++ .||++||||||+++|+...
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~--~~yp~~~~r~~la~~l~L~~----------~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKE--NKRPSKELQITISQQLGLEL----------STVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCH----------HHhhhcChhhhccccccCC
Confidence 456899999999999999999999 69999999999999999975 9999999999999988764
No 68
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.55 E-value=4.7e-15 Score=116.71 Aligned_cols=62 Identities=24% Similarity=0.249 Sum_probs=54.0
Q ss_pred CCCccccCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 8 GGPAFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 8 ~~pRtrFT~~QI~eLEk~F~e-~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
.+.+++||.+|+..||+.|.. ..++||+...++.||..+||++ .||++||||||+++|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~----------~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSR----------IQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCH----------HHcccccHHHHcccccccc
Confidence 356777999999999999987 2259999999999999999985 9999999999999998764
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=3.6e-15 Score=115.01 Aligned_cols=52 Identities=15% Similarity=0.338 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhc
Q 016887 16 PAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKS 78 (381)
Q Consensus 16 ~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~ 78 (381)
..|+.+||+.|... ++||+...|.+||.+|+|++ .||++||||||+|+|+..
T Consensus 9 ~~~~~~LE~~F~~~-~~yp~~~~r~~LA~~l~Lte----------rQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAI-TKHPDEKRLEGLSKQLDWDV----------RSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTT-CSSCCHHHHHHHHHHHCSCH----------HHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHc-CCCcCHHHHHHHHHHhCCCH----------HHHHHHHHHHHhccCCCC
Confidence 35799999999543 69999999999999999985 999999999999998754
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.49 E-value=1.3e-14 Score=126.15 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=55.6
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhh
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAK 77 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk 77 (381)
..++.|+.||..|+..||+.|.. ++||+...|.+||..+||++ .||++||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~--~~yps~~~r~~LA~~l~L~~----------~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK--SPKPSLQQITHIANQLGLEK----------DVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT--CSCCCHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHcc--CCCCCHHHHHHHHHHcCCCh----------hheeeccccccccccCC
Confidence 45788999999999999999997 79999999999999999985 99999999999999874
No 71
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=5.9e-14 Score=111.05 Aligned_cols=60 Identities=15% Similarity=0.365 Sum_probs=55.1
Q ss_pred CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhh
Q 016887 6 SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (381)
Q Consensus 6 s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kk 76 (381)
..+++||.||.+|+..||..|+.. +.||+.+.|+.||.+++|++ .+|++||||||+-.+-
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~-~~yPd~~~r~~La~~tGL~~----------~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDV-GLYPDQEAIHTLSAQLDLPK----------HTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH-CSCCCHHHHHHHHHHSCCCH----------HHHHHHHHHHHHHCCS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCH----------HHHHHhhccceeeecC
Confidence 468999999999999999999995 59999999999999999985 9999999999997643
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=6e-14 Score=106.98 Aligned_cols=57 Identities=32% Similarity=0.341 Sum_probs=49.6
Q ss_pred ccCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 13 RFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~-~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
+||.+|+..||..|.++ .++||+..++++||..+||++ .||++||||||+|+|+.+.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~----------~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTI----------LQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCH----------HHhhhhhHHHHHHHhHHHH
Confidence 79999999999999932 379999999999999999985 9999999999999998663
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.35 E-value=2e-13 Score=124.18 Aligned_cols=68 Identities=26% Similarity=0.391 Sum_probs=56.3
Q ss_pred CCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCC----------Cc-cccCCcccccchhHhhhhcchhhHh
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSE----------SP-ERKGKIMVQMKQVWNWFQNRRYAIR 75 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnl----------S~-~RaGk~~Vq~kQVk~WFQNRR~K~K 75 (381)
.++.||.||+.|+.+||+.|+. ++||+...|++||+.+|. +. ---|+-.|++.||++||||||++.|
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~--~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER--QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH--HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCcccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 4889999999999999999999 699999999999999982 11 1125556788999999999999986
Q ss_pred h
Q 016887 76 A 76 (381)
Q Consensus 76 k 76 (381)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 5
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.27 E-value=2.7e-12 Score=119.45 Aligned_cols=66 Identities=30% Similarity=0.447 Sum_probs=56.9
Q ss_pred CCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCC--------Ccc---ccCCcccccchhHhhhhcchhhH
Q 016887 7 NGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSE--------SPE---RKGKIMVQMKQVWNWFQNRRYAI 74 (381)
Q Consensus 7 ~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnl--------S~~---RaGk~~Vq~kQVk~WFQNRR~K~ 74 (381)
.++.||.||++|+.+||+.|+. ++||+...|++||+.+|+ +.. .-|...||+.||++||||||++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~--~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR--QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 4899999999999999999999 799999999999999983 111 22566799999999999999863
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.24 E-value=3.4e-12 Score=119.11 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=50.1
Q ss_pred CccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHh
Q 016887 10 PAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIR 75 (381)
Q Consensus 10 pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~K 75 (381)
.+..|+..|+.+||+.|+. ++||++..|++||.++||++ +||++||||||+|+|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~--~~yp~~~~~~~la~~~~l~~----------~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRR--KQSLNSKEKEEVAKKCGITP----------LQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHH--CSCCCHHHHHHHHHHHTSCH----------HHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhc--CCCcCHHHHHHHHHHHCcCH----------HHhhHhhhhcccccC
Confidence 4567999999999999988 79999999999999999985 999999999999875
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.13 E-value=3.5e-11 Score=98.29 Aligned_cols=59 Identities=27% Similarity=0.331 Sum_probs=52.2
Q ss_pred ccccCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhcc
Q 016887 11 AFRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 11 RtrFT~~QI~eLEk~F~e-~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~ 79 (381)
..-|+.+++..|+.-|.+ ..++||+.+++++||+.+||++ +||++||||||.++++.+.
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~----------~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLST----------LQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCH----------HHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHhhhHHH
Confidence 346899999999999976 3469999999999999999985 9999999999999988664
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.8e-10 Score=91.27 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhh
Q 016887 16 PAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (381)
Q Consensus 16 ~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kk 76 (381)
.+|+..||..|.. |.+|+.+++++||+++||+. ++|++||||||..+.-
T Consensus 14 k~ql~~Lk~yF~~--n~~Ps~eei~~LA~~lgL~~----------~VVrVWFqNrRa~~~~ 62 (71)
T 2da7_A 14 KDHMSVLKAYYAM--NMEPNSDELLKISIAVGLPQ----------EFVKEWFEQRKVYQYS 62 (71)
T ss_dssp THHHHHHHHHHHH--CSSCCHHHHHHHHHHHTCCH----------HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCH----------HHHHHHHhhccccccC
Confidence 5789999999999 79999999999999999985 8899999999986543
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.41 E-value=3.6e-08 Score=69.33 Aligned_cols=19 Identities=37% Similarity=0.735 Sum_probs=17.2
Q ss_pred chhHhhhhcchhhHhhhcc
Q 016887 61 KQVWNWFQNRRYAIRAKSI 79 (381)
Q Consensus 61 kQVk~WFQNRR~K~Kkk~~ 79 (381)
.||++||||||+|||++..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHH
T ss_pred CCceeccHHHHHHHHHHhH
Confidence 4899999999999999874
No 79
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=95.62 E-value=0.084 Score=45.52 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=69.9
Q ss_pred ceeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccccccccccCCcccccccccccCCceEEEeee
Q 016887 142 FMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQRSLPCEASECVAVLPGDLILCFQE 221 (381)
Q Consensus 142 ~lEFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~rS~plE~sEC~~v~~Gd~VcCfqe 221 (381)
+|.-|-+. ++||||-.-+ .. + .+.++.|.|.+- -+..++|.+. .+|+..-+ ++. ..+..||-|-+|..
T Consensus 5 ~~~VEV~~-~~G~~y~a~V-~~---v--~~d~~~V~f~n~-w~~~~~vp~~-~vRlpP~~--~~~-~~f~~gd~VEV~~~ 72 (128)
T 3h8z_A 5 GLPVEVRG-SNGAFYKGFV-KD---V--HEDSVTIFFENN-WQSERQIPFG-DVRLPPPA--DYN-KEITEGDEVEVYSR 72 (128)
T ss_dssp TCEEEEEC-TTSCEEEEEE-EE---E--CSSEEEEEETTC-TTCCEEEEGG-GEECCCCC-------CCCTTCEEEEEEC
T ss_pred ccEEEEec-CCCCEEEEEE-EE---E--eCCcEEEEEccc-cCcceEechh-hEEcCCCc--ccc-cCCCCCCEEEEEec
Confidence 35556555 5799998444 22 2 457899999542 1224555555 88886555 334 47899999999876
Q ss_pred cCC--cceEeeEEEeeeeecccCCCCcceEEEEEeecC--CccccccCcceeec
Q 016887 222 GKD--QALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHD--QSEEIVPLRKVCRR 271 (381)
Q Consensus 222 g~d--~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hd--p~ee~v~l~kvC~r 271 (381)
.++ -.-||=|.|..++ | +.+.|.|+.= +..|+|++++|=..
T Consensus 73 ~~d~ep~gWw~a~I~~~k-------g--~f~~V~y~~~~~~~~EiV~~~rlR~~ 117 (128)
T 3h8z_A 73 ANEQEPCGWWLARVRMMK-------G--DFYVIEYAACDATYNEIVTLERLRPV 117 (128)
T ss_dssp C---CCCEEEEEEEEEEE-------T--TEEEEEETTC----CEEECGGGEEEC
T ss_pred CCCCCcCccEEEEEEEee-------C--CEEEEEEcCCCCCcceEEehhheEeC
Confidence 433 4569999999887 3 4777886552 33588888887443
No 80
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.029 Score=45.94 Aligned_cols=44 Identities=14% Similarity=0.328 Sum_probs=35.4
Q ss_pred CCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccccccccc
Q 016887 151 RDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQ 197 (381)
Q Consensus 151 ~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~ 197 (381)
+||-||...+. +-| ...|+.+.+|||.||..--||||... |++.
T Consensus 34 ~~~~~y~AkIl-~ir-~~~~~~~YyVHY~g~NkRlDEWV~~~-rl~l 77 (92)
T 2ro0_A 34 KNDEERLAEIL-SIN-TRKAPPKFYVHYVNYNKRLDEWITTD-RINL 77 (92)
T ss_dssp ETTEEEEEEEE-EEE-CSSSSCEEEEEETTSCTTSCEEEEGG-GEET
T ss_pred ECCEEEEEEEE-EEE-EcCCCcEEEEEeCCcCcccccccCHh-Hccc
Confidence 39999998875 333 24677899999999999999999986 5543
No 81
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=94.94 E-value=0.07 Score=49.94 Aligned_cols=92 Identities=17% Similarity=0.357 Sum_probs=63.5
Q ss_pred EeeccCCCceeehhhhhhccccC-----CCCCeEEEEecCCCCCccccccccccccccCCcccccccccccCCceEEEee
Q 016887 146 EAKSARDGAWYDVSAFLAQRNFD-----TADPEVQVRFAGFGAEEDEWVNIKRHVRQRSLPCEASECVAVLPGDLILCFQ 220 (381)
Q Consensus 146 EA~S~~DgAWYDV~~fL~~r~l~-----tge~elrVrf~gFg~eeDEwvnvk~rvR~rS~plE~sEC~~v~~Gd~VcCfq 220 (381)
.|+-...||||...+.-=.+... +.+.-+.|.|..|.+..---+.++ .+|+|+.. ...=..|.+|..|.+.-
T Consensus 10 d~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~-~irprar~--~~~~~~l~~g~~vm~ny 86 (226)
T 3ask_A 10 DARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSR-DVRARART--IIKWQDLEVGQVVMLNY 86 (226)
T ss_dssp EEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGG-GEEECCCC--BCCGGGCCTTCEEEEEE
T ss_pred EeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccc-cccccccc--cCCccccccCcEEEEec
Confidence 46666689999876654444221 234667899998866654444444 57777755 45556899999999643
Q ss_pred ---ecCCcceEeeEEEeeeeecc
Q 016887 221 ---EGKDQALYFDAHVLDAQRRR 240 (381)
Q Consensus 221 ---eg~d~alyyDA~V~~Vqrr~ 240 (381)
.-++...||||+|..+...+
T Consensus 87 n~~~~~~~G~~y~~~I~~~~~~r 109 (226)
T 3ask_A 87 NPDNPKERGFWYDAEISRKRETR 109 (226)
T ss_dssp CTTSTTSCCEEEEEEEEEEEECS
T ss_pred ccCCccccCceeehhhhhhhhcc
Confidence 45568899999999988654
No 82
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.84 E-value=0.016 Score=47.12 Aligned_cols=47 Identities=15% Similarity=0.333 Sum_probs=36.4
Q ss_pred CCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccccccccccCC
Q 016887 151 RDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQRSL 200 (381)
Q Consensus 151 ~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~rS~ 200 (381)
+++-||...+. +-+ ...|+.+.+|||.||..--||||... |++...+
T Consensus 25 ~~~~~y~AkIl-~i~-~~~~~~~YyVHY~g~NkRlDEWV~~~-rl~~~~~ 71 (87)
T 2eko_A 25 NEDEWPLAEIL-SVK-DISGRKLFYVHYIDFNRRLDEWVTHE-RLDLKKI 71 (87)
T ss_dssp CCEECCEEEEE-EEC-CSSSCCCEEEEECSSCSCCCEEECTT-TBCGGGC
T ss_pred CCCeEEEEEEE-EEE-EcCCCcEEEEEeCCCCcccccccCHh-Hcccccc
Confidence 48889987764 433 24577899999999999999999986 6665543
No 83
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=94.74 E-value=0.026 Score=44.44 Aligned_cols=56 Identities=25% Similarity=0.525 Sum_probs=38.5
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCccc----cccccccccccCCcccccccc
Q 016887 146 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDE----WVNIKRHVRQRSLPCEASECV 208 (381)
Q Consensus 146 EA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDE----wvnvk~rvR~rS~plE~sEC~ 208 (381)
-|+-+.||.||-+.+.-- . ++..+.|.|..||+.+.- ...+...| .++|.|+.+|.
T Consensus 35 ~a~~~~d~~wyRA~I~~~---~--~~~~~~V~fvDyGn~e~v~~~~lr~l~~~f--~~lP~qA~~Cs 94 (94)
T 3fdr_A 35 AAPLPTNGSWYRARVLGT---L--ENGNLDLYFVDFGDNGDCPLKDLRALRSDF--LSLPFQAIECS 94 (94)
T ss_dssp EEEETTTTEEEEEEEEEE---C--TTSCEEEEETTTCCEEEECGGGCEECCGGG--GCSCCCCCCC-
T ss_pred EEEECCCCeEEEEEEEEE---C--CCCeEEEEEEcCCCeEEEEHHHhhhcCHHH--hcCCcceEEeC
Confidence 455567999999887522 1 235799999999997532 22233444 58999999995
No 84
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=94.56 E-value=0.075 Score=42.85 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=38.1
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccccc-ccccc
Q 016887 143 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKR-HVRQR 198 (381)
Q Consensus 143 lEFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~-rvR~r 198 (381)
+-+||.. ..+-||.+-+.. ....+..|+|||.|+....|||+++.. ++++.
T Consensus 24 mkLEA~D-~~~~~~~a~i~~----v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~P~ 75 (88)
T 2eqm_A 24 ARLEALD-YLQKWYPSRIEK----IDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPL 75 (88)
T ss_dssp CEEEEEC-TTSCEEEEEEEE----EETTTTEEEEEESSSTTTEEEEEETTSCCEECC
T ss_pred CEEEEEc-CCCCeeEEEEEE----EeccCCEEEEEECCCCCcccEEeeCCCCcEecc
Confidence 6788886 446899776653 223356899999999999999999863 55543
No 85
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=94.07 E-value=0.079 Score=43.70 Aligned_cols=44 Identities=14% Similarity=0.328 Sum_probs=35.5
Q ss_pred CCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccccccccc
Q 016887 151 RDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQ 197 (381)
Q Consensus 151 ~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~ 197 (381)
+||-||...+. +-| ...|+.+.+|+|.||..--||||... |+..
T Consensus 36 ~~~~~yeAeIl-~ir-~~~g~~~YYVHY~g~NkRlDEWV~~~-RI~l 79 (94)
T 2rnz_A 36 KNDEERLAEIL-SIN-TRKAPPKFYVHYVNYNKRLDEWITTD-RINL 79 (94)
T ss_dssp CSSCEEEEEEE-EEE-CSSSSCEEEEECTTSCSTTCEEEETT-TBCS
T ss_pred ECCEEEEEEEE-EEE-EcCCCcEEEEEeCCcCcccccccCHH-Hccc
Confidence 59999998875 333 24678999999999999999999986 5543
No 86
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=93.26 E-value=0.053 Score=44.76 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=33.4
Q ss_pred CCceeehhhhhhccccC--CCCCeEEEEecCCCCCcccccccccccc
Q 016887 152 DGAWYDVSAFLAQRNFD--TADPEVQVRFAGFGAEEDEWVNIKRHVR 196 (381)
Q Consensus 152 DgAWYDV~~fL~~r~l~--tge~elrVrf~gFg~eeDEwvnvk~rvR 196 (381)
||.||...+. +-|.-. .|..+.+|||.||..--||||... |++
T Consensus 27 dg~~yeAeIl-~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~-RL~ 71 (92)
T 2bud_A 27 DGTVHRGQVL-QSRTTENAAAPDEYYVHYVGLNRRLDGWVGRH-RIS 71 (92)
T ss_dssp TSCEEEEEEE-EEECTTTCSSCCEEEEECSSSCTTTCEEEETT-TEE
T ss_pred CCCEEEEEEE-EEeeccCCCCCcEEEEEeCCcccccccccCHH-Hhc
Confidence 8999998874 444323 256799999999999999999864 443
No 87
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=93.26 E-value=0.11 Score=44.80 Aligned_cols=46 Identities=24% Similarity=0.489 Sum_probs=34.5
Q ss_pred CCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccccccccc
Q 016887 152 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQR 198 (381)
Q Consensus 152 DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~r 198 (381)
||-||...+.---..-..|..+++|||.||..--||||..- |++..
T Consensus 25 d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~-ri~~~ 70 (133)
T 1wgs_A 25 DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKN-RLALT 70 (133)
T ss_dssp TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTT-TSCCT
T ss_pred CCCEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChh-hcccc
Confidence 89999988753211113467899999999999999999985 56543
No 88
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=93.09 E-value=0.19 Score=37.68 Aligned_cols=52 Identities=12% Similarity=0.221 Sum_probs=38.4
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCccee
Q 016887 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVC 269 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC 269 (381)
..++||.+++.- . +|.+||.|+|.+|.... -.+.|.|..=.+.|.|++.+|-
T Consensus 8 ~~~vGd~c~A~~-s-~Dg~wYrA~I~~v~~~~-------~~~~V~fvdYGn~e~V~~~~Lr 59 (64)
T 4a4f_A 8 SWKVGDKCMAVW-S-EDGQCYEAEIEEIDEEN-------GTAAITFAGYGNAEVTPLLNLK 59 (64)
T ss_dssp CCCTTCEEEEEC-T-TTSSEEEEEEEEEETTT-------TEEEEEETTTTEEEEEEGGGEE
T ss_pred CCCCCCEEEEEE-C-CCCCEEEEEEEEEcCCC-------CEEEEEEEecCCEEEEeHHHcE
Confidence 568999777533 2 35579999999998421 1568899887788889888874
No 89
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=92.93 E-value=0.2 Score=42.39 Aligned_cols=68 Identities=16% Similarity=0.313 Sum_probs=44.0
Q ss_pred cccCCceEEEee-ecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCcc--ccccCcceeecccccHHH
Q 016887 209 AVLPGDLILCFQ-EGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKVCRRPETDYRL 278 (381)
Q Consensus 209 ~v~~Gd~VcCfq-eg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~e--e~v~l~kvC~rp~~Dp~l 278 (381)
+...|+.||||+ +....-+.|||.|++|....=....-.-.++|-|.-=+.- |-|+-.+| +..+|-.+
T Consensus 19 ~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drl--lk~neeN~ 89 (110)
T 3oa6_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHV--LRDTDENR 89 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGE--EECCHHHH
T ss_pred ccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhh--hcCCHHHH
Confidence 467999999997 4444668899999999865532222334688888655544 55666655 33344443
No 90
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=92.37 E-value=0.048 Score=42.96 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=35.2
Q ss_pred CCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccccccccccCC
Q 016887 151 RDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQRSL 200 (381)
Q Consensus 151 ~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~rS~ 200 (381)
+++-||...+. +-+ ...|+.+..|+|.||...-||||... |++..+.
T Consensus 20 k~~~~y~AkIl-~i~-~~~~~~~Y~VHY~gwnkr~DEWV~~~-ri~~~~~ 66 (76)
T 2lcc_A 20 KTQKIYEASIK-STE-IDDGEVLYLVHYYGWNVRYDEWVKAD-RIIWPLD 66 (76)
T ss_dssp TEEEEEEEEEE-EEE-EETTEEEEEEEETTSCCSSCEEEEGG-GEECSSC
T ss_pred CCCCEEEEEEE-EEE-ccCCceEEEEEeCCcCCCceEecChh-hcccccc
Confidence 45789988873 433 34566789999999999999999976 5554443
No 91
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.78 E-value=0.29 Score=38.42 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=41.6
Q ss_pred cccccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcceeecc
Q 016887 205 SECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRP 272 (381)
Q Consensus 205 sEC~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC~rp 272 (381)
+.....++||.+++--. |.+||.|.|.+|... + ++.|.|+.+ +.|.|+..+|--.|
T Consensus 5 ~~~~~~kvGd~clA~ws---Dg~~Y~A~I~~v~~~-----~---~~~V~f~Dy-n~e~v~~~~lrplp 60 (74)
T 2equ_A 5 SSGFDFKAGEEVLARWT---DCRYYPAKIEAINKE-----G---TFTVQFYDG-VIRCLKRMHIKAMP 60 (74)
T ss_dssp CSCCCCCTTCEEEEECS---SSSEEEEEEEEESTT-----S---SEEEEETTS-CEEEECGGGEECCC
T ss_pred cCCCCCCCCCEEEEECC---CCCEEEEEEEEECCC-----C---EEEEEEecC-CeEEecHHHCeeCC
Confidence 34567899999998643 568999999999532 2 348999988 88888877664333
No 92
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=91.76 E-value=0.41 Score=37.40 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=41.3
Q ss_pred ccccccc----ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcceeeccc
Q 016887 201 PCEASEC----VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPE 273 (381)
Q Consensus 201 plE~sEC----~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC~rp~ 273 (381)
+|+++.+ +..++||++++.- . ++..||-|+|++|.... =.+.|.|..=.+.+.|++.+|.-.|.
T Consensus 5 ~l~~~~~~e~~~~~kvGd~C~A~y-s-~Dg~wYRA~I~~i~~~~-------~~~~V~fvDYGN~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 5 ILESSIPMEYAKMWKPGDECFALY-W-EDNKFYRAEVEALHSSG-------MTAVVKFIDYGNYEEVLLSNIKPIQT 72 (77)
T ss_dssp ------CHHHHTTCCTTCEEEEEE-T-TTTEEEEEEEEEECTTS-------SEEEEEETTTCCEEEEEGGGEECC--
T ss_pred ccccccchhhcCCCCcCCEEEEEE-C-CCCCEEEEEEEEEeCCC-------CEEEEEEEcCCCeEEEeHHHeEECCh
Confidence 4555555 4589999777533 2 35689999999986431 24578888877788899998876654
No 93
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=91.72 E-value=0.11 Score=41.95 Aligned_cols=55 Identities=25% Similarity=0.558 Sum_probs=38.7
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccc------cccccccCCccccccccc
Q 016887 146 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI------KRHVRQRSLPCEASECVA 209 (381)
Q Consensus 146 EA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnv------k~rvR~rS~plE~sEC~~ 209 (381)
-|+-+.||.||-+.+.-- . ++..+.|.|..||+.+. ++. ...| .++|.|+.+|.-
T Consensus 40 ~a~~~~d~~wyRA~V~~~---~--~~~~~~V~fvDyGn~e~--v~~~~Lr~l~~~f--~~lP~qA~~c~L 100 (110)
T 2diq_A 40 AAPLPTNGSWYRARVLGT---L--ENGNLDLYFVDFGDNGD--CPLKDLRALRSDF--LSLPFQAIECSL 100 (110)
T ss_dssp EECCTTTCSCEEEEECCC---C--SSSCEEEEETTTCCEEE--ECGGGCEECCHHH--HSSCCSSCCSCS
T ss_pred EEEECCCCeEEEEEEEEE---C--CCCeEEEEEEeCCCeEE--EehHHhhcCcHHH--hCCCcceEEEEE
Confidence 456567999999886521 1 23579999999999853 333 2233 578999999974
No 94
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=91.59 E-value=0.3 Score=39.47 Aligned_cols=53 Identities=13% Similarity=0.081 Sum_probs=39.6
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcceee
Q 016887 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCR 270 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC~ 270 (381)
..++||++|+.. .+|..||.|+|.+|... . =.+.|.|..=.+.|.|++.+|.-
T Consensus 10 ~~kvGd~C~A~y--s~Dg~wYrA~I~~i~~~---~----~~~~V~fiDYGN~E~V~~~~Lrp 62 (88)
T 1g5v_A 10 QWKVGDKCSAIW--SEDGCIYPATIASIDFK---R----ETCVVVYTGYGNREEQNLSDLLS 62 (88)
T ss_dssp CCCSSCEEEEEC--TTTCCEEEEEEEEEETT---T----TEEEEEETTTCCEEEEEGGGCBC
T ss_pred CCCCCCEEEEEE--CCCCCEEEEEEEEecCC---C----CEEEEEEecCCCEEEEcHHHccc
Confidence 678999777533 33668999999999542 1 24678888888888899988754
No 95
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=91.31 E-value=0.39 Score=35.27 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=38.8
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcceeec
Q 016887 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRR 271 (381)
Q Consensus 208 ~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC~r 271 (381)
+..++||++++.- . ++..||.|+|++|.... =.+.|.|..=.+.|.|++.+|.-.
T Consensus 2 ~~~~~G~~c~A~~-s-~Dg~wYrA~I~~i~~~~-------~~~~V~f~DYGn~e~v~~~~Lr~~ 56 (59)
T 1mhn_A 2 QQWKVGDKCSAIW-S-EDGCIYPATIASIDFKR-------ETCVVVYTGYGNREEQNLSDLLSP 56 (59)
T ss_dssp CCCCTTCEEEEEC-T-TTSCEEEEEEEEEETTT-------TEEEEEETTTTEEEEEEGGGCBCT
T ss_pred CcCCcCCEEEEEE-C-CCCCEEEEEEEEEcCCC-------CEEEEEEEcCCCEEEEcHHHeeCC
Confidence 3578999766533 2 35579999999995421 256888888667788888877543
No 96
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=91.30 E-value=0.11 Score=41.15 Aligned_cols=48 Identities=25% Similarity=0.536 Sum_probs=40.3
Q ss_pred ceeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 142 FMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 142 ~lEFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
.+.|+.- ++-+|.|.-.|.+|....|..+++|+..||+.+++.|-+..
T Consensus 13 ~~~~~~~---~~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~ 60 (81)
T 4hae_A 13 NLYFQGA---SGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEH 60 (81)
T ss_dssp CEEEECT---TSCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGG
T ss_pred cccccCC---CCCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHH
Confidence 3555543 46799999999999888899999999999999999998754
No 97
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=90.80 E-value=0.54 Score=42.28 Aligned_cols=89 Identities=18% Similarity=0.383 Sum_probs=57.2
Q ss_pred EeeccCCCceeehhhhhhcccc--------------CCCCCeEEEEecCCCCCcccccccc-ccccccCCcccccccccc
Q 016887 146 EAKSARDGAWYDVSAFLAQRNF--------------DTADPEVQVRFAGFGAEEDEWVNIK-RHVRQRSLPCEASECVAV 210 (381)
Q Consensus 146 EA~S~~DgAWYDV~~fL~~r~l--------------~tge~elrVrf~gFg~eeDEwvnvk-~rvR~rS~plE~sEC~~v 210 (381)
.|+-..-|||+...+.-=.|.- ..-+.-..|.|.+|.+.. -+.+. +.+|+|..-+= .=+.|
T Consensus 18 DarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~g--vv~~~~~~iRpRARt~l--~w~~L 93 (161)
T 3db3_A 18 DARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENG--VVQMNSRDVRARARTII--KWQDL 93 (161)
T ss_dssp EEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGC--EEEEEGGGEECCCCCBC--CGGGC
T ss_pred eeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCC--eEecchhccccceEEec--cHHHC
Confidence 4666668999765432211110 012356789998776544 34432 58888887543 44689
Q ss_pred cCCceEEE---eeecCCcceEeeEEEeeeee
Q 016887 211 LPGDLILC---FQEGKDQALYFDAHVLDAQR 238 (381)
Q Consensus 211 ~~Gd~VcC---fqeg~d~alyyDA~V~~Vqr 238 (381)
.+|+.|.. ..+-++--.||||.|..+..
T Consensus 94 ~vGqvVMvNYN~d~PkerGfWYDaeI~~~~~ 124 (161)
T 3db3_A 94 EVGQVVMLNYNPDNPKERGFWYDAEISRKRE 124 (161)
T ss_dssp CTTCEEEEEECSSSTTSCCEEEEEEEEEEEE
T ss_pred CcCcEEEEecCCCCccccceeEEEEEeeehh
Confidence 99999995 34555788999999998743
No 98
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=90.55 E-value=0.091 Score=43.81 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=32.5
Q ss_pred CCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccccccc
Q 016887 152 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVR 196 (381)
Q Consensus 152 DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR 196 (381)
++-||+..+.-- + ...|+.+++|+|.||...-||||... |++
T Consensus 34 ~~~~YeAkIl~v-~-~~~~~~~Y~VHY~GwNkR~DEWV~~~-Rl~ 75 (102)
T 2f5k_A 34 GPLLYEAKCVKV-A-IKDKQVKYFIHYSGWNKNWDEWVPES-RVL 75 (102)
T ss_dssp SSSEEEEEEEEE-E-EETTEEEEEEEETTSCGGGCEEEEGG-GEE
T ss_pred CCEEEEEEEEEE-E-EcCCCcEEEEEeCCcCCCceeeccHh-hcc
Confidence 789999886532 2 24567899999999999999999953 444
No 99
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=89.86 E-value=0.2 Score=36.05 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=26.5
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCcc
Q 016887 146 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEED 186 (381)
Q Consensus 146 EA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeD 186 (381)
-|+-+.||.||...+.-- ...+..+.|.|.+||+.|.
T Consensus 9 ~A~~s~Dg~wYrA~I~~i----~~~~~~~~V~fvDYGn~e~ 45 (54)
T 3s6w_A 9 FALYWEDNKFYRAEVEAL----HSSGMTAVVKFIDYGNYEE 45 (54)
T ss_dssp EEEETTTTEEEEEEEEEC------CCSEEEEEETTTCCEEE
T ss_pred EEEECCCCCEEEEEEEEE----eCCCCEEEEEEEccCCeEE
Confidence 466678999999886521 1123679999999999753
No 100
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=89.20 E-value=0.92 Score=32.54 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=35.2
Q ss_pred ccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCccee
Q 016887 210 VLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVC 269 (381)
Q Consensus 210 v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC 269 (381)
.++||++++.- .+|..||.|+|++|.... =.+.|.|..=.+.|.|++.+|.
T Consensus 2 wk~G~~c~A~~--s~Dg~wYrA~I~~i~~~~-------~~~~V~fvDYGn~e~v~~~~lr 52 (54)
T 3s6w_A 2 WKPGDECFALY--WEDNKFYRAEVEALHSSG-------MTAVVKFIDYGNYEEVLLSNIK 52 (54)
T ss_dssp CCTTCEEEEEE--TTTTEEEEEEEEEC--CC-------SEEEEEETTTCCEEEEEGGGEE
T ss_pred CCCCCEEEEEE--CCCCCEEEEEEEEEeCCC-------CEEEEEEEccCCeEEEeHHHEE
Confidence 36899887643 235589999999986431 2457888877777888887763
No 101
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=88.94 E-value=0.15 Score=44.04 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=36.7
Q ss_pred eeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccccccccc-----cCCccccccccc
Q 016887 147 AKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQ-----RSLPCEASECVA 209 (381)
Q Consensus 147 A~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~-----rS~plE~sEC~~ 209 (381)
|+-+.||.||-..+.-- .. +..+.|.|..||+.+. + +.+|+ .++|.|+.+|.-
T Consensus 56 A~~~~d~~wyRa~I~~~---~~--~~~~~V~fvDyGn~~~-v----~~lr~l~~~f~~lP~qA~~c~L 113 (169)
T 3ntk_A 56 AQFPEDEVFYRAQIRKV---LD--DGKCEVHFIDFGNNAV-T----QQFRQLPEELAKPARYSRHCEL 113 (169)
T ss_dssp EEETTTTEEEEEEEEEE---CS--TTCEEEEETTTTEEEE-E----SCEECCCHHHHSSCCSSEEEEE
T ss_pred EEECCCCcEEEEEEEEE---CC--CCEEEEEEEecCCeEE-h----hhhhccCHHHhhCCceeEEEEE
Confidence 45456999999887621 22 2379999999999876 3 23333 367888888864
No 102
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=88.84 E-value=0.21 Score=36.71 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=31.1
Q ss_pred EEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccccccccc
Q 016887 145 FEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQ 197 (381)
Q Consensus 145 FEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~ 197 (381)
--|+-+.||.||...+.-- ......+.|.|.+||+.| -+++. .+|+
T Consensus 10 c~A~~s~Dg~wYrA~I~~i----~~~~~~~~V~f~DYGn~e--~v~~~-~Lr~ 55 (59)
T 1mhn_A 10 CSAIWSEDGCIYPATIASI----DFKRETCVVVYTGYGNRE--EQNLS-DLLS 55 (59)
T ss_dssp EEEECTTTSCEEEEEEEEE----ETTTTEEEEEETTTTEEE--EEEGG-GCBC
T ss_pred EEEEECCCCCEEEEEEEEE----cCCCCEEEEEEEcCCCEE--EEcHH-HeeC
Confidence 3466678999999887621 222368999999999874 34443 4444
No 103
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=88.59 E-value=0.75 Score=35.81 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=39.0
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcceee
Q 016887 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCR 270 (381)
Q Consensus 208 ~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC~ 270 (381)
...+.||.|+|-= .+-+||.|.|.+|... +++.|.|+. ...+.|....|=.
T Consensus 5 ~~~~vGd~vmArW---~D~~yYpA~I~si~~~--------~~Y~V~F~d-G~~etvk~~~ikp 55 (67)
T 3p8d_A 5 SEFQINEQVLACW---SDCRFYPAKVTAVNKD--------GTYTVKFYD-GVVQTVKHIHVKA 55 (67)
T ss_dssp CCCCTTCEEEEEC---TTSCEEEEEEEEECTT--------SEEEEEETT-SCEEEEEGGGEEE
T ss_pred cccccCCEEEEEc---CCCCEeeEEEEEECCC--------CeEEEEEeC-CceEEEeHHHccc
Confidence 4678999999643 5789999999999765 579999998 6666666555533
No 104
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.27 E-value=0.4 Score=37.90 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcc
Q 016887 19 VTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNR 70 (381)
Q Consensus 19 I~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNR 70 (381)
.+-|++-|.++ +.|..+..++|+.+-.+|. .||+.||--|
T Consensus 18 ~e~L~~Yy~~h--k~L~EeDl~~L~~kskms~----------qqvkdwFa~k 57 (70)
T 2ys9_A 18 IQPLERYWAAH--QQLRETDIPQLSQASRLST----------QQVLDWFDSR 57 (70)
T ss_dssp CHHHHHHHHHT--CCCCTTHHHHHHHHTTCCH----------HHHHHHHHHH
T ss_pred chHHHHHHHHh--cccchhhHHHHHHHhCCCH----------HHHHHHHHhc
Confidence 46799999996 8999999999999999985 8999999777
No 105
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=87.52 E-value=0.2 Score=39.19 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=35.2
Q ss_pred CCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 152 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 152 DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
|.-.|.|.-.|.+|....|..+++|+..||+.+++-|-+..
T Consensus 18 ~~e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~ 58 (75)
T 2rsn_A 18 DADVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQ 58 (75)
T ss_dssp GGGCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGG
T ss_pred CCceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHH
Confidence 34468899999999878899999999999999999997654
No 106
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=87.27 E-value=0.11 Score=41.72 Aligned_cols=38 Identities=24% Similarity=0.476 Sum_probs=29.6
Q ss_pred CCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccc
Q 016887 152 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI 191 (381)
Q Consensus 152 DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnv 191 (381)
++-||...+. +-+. ..|+.+..|||.||..--||||..
T Consensus 24 ~~~~y~AkIl-~i~~-~~~~~~YyVHY~GwNkR~DEWV~~ 61 (85)
T 2lrq_A 24 GPLIYEAKVL-KTKP-DATPVEYYIHYAGWSKNWDEWVPE 61 (85)
Confidence 5678887764 3332 456789999999999999999985
No 107
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=87.17 E-value=1.3 Score=34.49 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=42.8
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcceeeccc
Q 016887 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPE 273 (381)
Q Consensus 208 ~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC~rp~ 273 (381)
...++||++++.- . ++..||-|+|++|... .=.+.|+|..=.+.+.|++.+|...|.
T Consensus 8 ~~~~~G~~c~A~~-s-~Dg~wYRA~I~~i~~~-------~~~~~V~fiDYGN~e~V~~~~Lr~l~~ 64 (78)
T 2d9t_A 8 KVWKPGDECFALY-W-EDNKFYRAEVEALHSS-------GMTAVVKFTDYGNYEEVLLSNIKPVQT 64 (78)
T ss_dssp CCCCTTCEEEEEC-T-TTCCEEEEEEEEECSS-------SSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred cCCCcCCEEEEEE-C-CCCCEEEEEEEEEeCC-------CCEEEEEEEcCCCeEEEcHHHeEeCCH
Confidence 4578999977532 2 3567999999999632 136789998888889999999877654
No 108
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=87.04 E-value=0.44 Score=36.22 Aligned_cols=45 Identities=22% Similarity=0.446 Sum_probs=31.9
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 143 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 143 lEFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
+-+||... .+-||...+. . +...+..|+|+|.|.....|+|++..
T Consensus 17 mkLEa~d~-~~p~~~AtV~-~---v~~~~~~~~VhfdGw~~~~D~W~~~d 61 (69)
T 3sd4_A 17 AQLEARDR-LKNWYPAHIE-D---IDYEEGKVLIHFKRWNHRYDEWFCWD 61 (69)
T ss_dssp CEEEEECT-TSCEEEEEEE-E---EETTTTEEEEEETTSCGGGCEEEETT
T ss_pred CEEEEEEC-CCCccccEEE-E---EeccCCEEEEEeCCCCCCCCEEEcCC
Confidence 67888864 4557744433 2 11133679999999999999999875
No 109
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=86.56 E-value=0.38 Score=37.47 Aligned_cols=56 Identities=14% Similarity=0.174 Sum_probs=35.3
Q ss_pred EEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccccccccccC-Cccccccc
Q 016887 145 FEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQRS-LPCEASEC 207 (381)
Q Consensus 145 FEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~rS-~plE~sEC 207 (381)
--|+-+.||.||...+.-- ...+..+.|.|..||+.|. +++. .+|+.. --+|+.-|
T Consensus 16 c~A~~s~Dg~wYRA~I~~i----~~~~~~~~V~fiDYGN~e~--V~~~-~Lr~l~~~ll~~~~~ 72 (78)
T 2d9t_A 16 CFALYWEDNKFYRAEVEAL----HSSGMTAVVKFTDYGNYEE--VLLS-NIKPVQTEAWVRDPN 72 (78)
T ss_dssp EEEECTTTCCEEEEEEEEE----CSSSSEEEEEETTTTEEEE--EEGG-GEEECCCCCCCCCSS
T ss_pred EEEEECCCCCEEEEEEEEE----eCCCCEEEEEEEcCCCeEE--EcHH-HeEeCCHHHhhhcCC
Confidence 3466678999999887622 1224679999999999854 4433 444432 22444444
No 110
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=86.34 E-value=0.39 Score=38.76 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=32.5
Q ss_pred eEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccccccccc
Q 016887 144 EFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQ 197 (381)
Q Consensus 144 EFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~ 197 (381)
.--|+-+.||.||...+.--. .....+.|.|.+||+.|. |++. .+|+
T Consensus 16 ~C~A~ys~Dg~wYrA~I~~i~----~~~~~~~V~fiDYGN~E~--V~~~-~Lrp 62 (88)
T 1g5v_A 16 KCSAIWSEDGCIYPATIASID----FKRETCVVVYTGYGNREE--QNLS-DLLS 62 (88)
T ss_dssp EEEEECTTTCCEEEEEEEEEE----TTTTEEEEEETTTCCEEE--EEGG-GCBC
T ss_pred EEEEEECCCCCEEEEEEEEec----CCCCEEEEEEecCCCEEE--EcHH-Hccc
Confidence 455777889999998765321 113679999999999864 4433 4554
No 111
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=86.27 E-value=1.1 Score=36.51 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=36.9
Q ss_pred cccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcce
Q 016887 207 CVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKV 268 (381)
Q Consensus 207 C~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kv 268 (381)
-.....||.|+|-= .+-+||.|.|.+|..- +++.|.|+. ...+.|....|
T Consensus 19 ~~~f~vGd~VlArW---~D~~yYPAkI~sV~~~--------~~YtV~F~D-G~~etvk~~~I 68 (85)
T 3qii_A 19 SSEFQINEQVLACW---SDCRFYPAKVTAVNKD--------GTYTVKFYD-GVVQTVKHIHV 68 (85)
T ss_dssp --CCCTTCEEEEEC---TTSCEEEEEEEEECTT--------SEEEEEETT-SCEEEEEGGGE
T ss_pred CcccccCCEEEEEe---CCCCEeeEEEEEECCC--------CeEEEEEeC-CCeEEecHHHc
Confidence 45788999999533 4789999999999865 579999998 55555554444
No 112
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=86.23 E-value=0.14 Score=41.20 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=36.7
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcce
Q 016887 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKV 268 (381)
Q Consensus 208 ~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kv 268 (381)
...++||.|++-.. |.+||.|.|.+|... + .+.|.|+. .+.|.|++.+|
T Consensus 5 ~~~kvGd~clAkws---Dg~wY~A~I~~v~~~-----~---~y~V~F~D-Gn~E~V~~s~L 53 (81)
T 2ldm_A 5 SEFQINEQVLASWS---DSRFYPAKVTAVNKD-----G---TYTVKFYD-GVVQTVKHIHV 53 (81)
Confidence 45789999998432 568999999999642 1 57899988 57777777654
No 113
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=85.56 E-value=2.2 Score=33.48 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=39.5
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCcc--ccccCcce
Q 016887 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKV 268 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~e--e~v~l~kv 268 (381)
.+..|+.|+|+........+|+|.|++|... +..-.|.|-|.-=+.- |-|+..+|
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~-----~~~~~Y~VHY~gwnkr~DEWV~~~ri 61 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEID-----DGEVLYLVHYYGWNVRYDEWVKADRI 61 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEE-----TTEEEEEEEETTSCCSSCEEEEGGGE
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEcc-----CCceEEEEEeCCcCCCceEecChhhc
Confidence 5679999999976433568999999998753 2445688888765543 44655555
No 114
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=85.08 E-value=0.45 Score=35.60 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=32.3
Q ss_pred eEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccccccccc
Q 016887 144 EFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQ 197 (381)
Q Consensus 144 EFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~ 197 (381)
.--|+-+.||.||...+.--. .....+.|.|.+||+.| .++.. .+|+
T Consensus 14 ~c~A~~s~Dg~wYrA~I~~v~----~~~~~~~V~fvdYGn~e--~V~~~-~Lrp 60 (64)
T 4a4f_A 14 KCMAVWSEDGQCYEAEIEEID----EENGTAAITFAGYGNAE--VTPLL-NLKP 60 (64)
T ss_dssp EEEEECTTTSSEEEEEEEEEE----TTTTEEEEEETTTTEEE--EEEGG-GEEC
T ss_pred EEEEEECCCCCEEEEEEEEEc----CCCCEEEEEEEecCCEE--EEeHH-HcEe
Confidence 445777889999998865221 11257999999999874 45544 5554
No 115
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=84.33 E-value=1.8 Score=36.05 Aligned_cols=52 Identities=21% Similarity=0.502 Sum_probs=38.1
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCcc--ccccCccee
Q 016887 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKVC 269 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~e--e~v~l~kvC 269 (381)
.+..|+.|+||. +-.+|+|.|++|... +..-.|.|-|.-=+.- |-|+..+|=
T Consensus 22 ~f~vGekVl~~~----~~~~YeAkIl~v~~~-----~~~~~Y~VHY~GwNkR~DEWV~~~Rl~ 75 (102)
T 2f5k_A 22 KFQEGERVLCFH----GPLLYEAKCVKVAIK-----DKQVKYFIHYSGWNKNWDEWVPESRVL 75 (102)
T ss_dssp SCCTTCEEEEES----SSSEEEEEEEEEEEE-----TTEEEEEEEETTSCGGGCEEEEGGGEE
T ss_pred ccCCCCEEEEEE----CCEEEEEEEEEEEEc-----CCCcEEEEEeCCcCCCceeeccHhhcc
Confidence 578999999998 347999999999963 2345688998765543 556655543
No 116
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=83.93 E-value=0.64 Score=36.28 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=27.6
Q ss_pred eEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCcc
Q 016887 144 EFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEED 186 (381)
Q Consensus 144 EFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeD 186 (381)
.--|+-+.||.||...+.-- . .....+.|.|.+||+.+.
T Consensus 23 ~C~A~ys~Dg~wYRA~I~~i---~-~~~~~~~V~fvDYGN~e~ 61 (77)
T 3pnw_C 23 ECFALYWEDNKFYRAEVEAL---H-SSGMTAVVKFIDYGNYEE 61 (77)
T ss_dssp EEEEEETTTTEEEEEEEEEE---C-TTSSEEEEEETTTCCEEE
T ss_pred EEEEEECCCCCEEEEEEEEE---e-CCCCEEEEEEEcCCCeEE
Confidence 34566678999999887521 1 112579999999999654
No 117
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=82.48 E-value=2.9 Score=34.79 Aligned_cols=59 Identities=14% Similarity=0.317 Sum_probs=36.4
Q ss_pred cccCCceEEEeee-cCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCcc--ccccCcc
Q 016887 209 AVLPGDLILCFQE-GKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRK 267 (381)
Q Consensus 209 ~v~~Gd~VcCfqe-g~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~e--e~v~l~k 267 (381)
.+.+|+.|+||+. .....+.|+|.|++|....=.-..-.=.++|-|.-=++- |-|+-.+
T Consensus 19 ~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edR 80 (101)
T 3m9q_A 19 LFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATV 80 (101)
T ss_dssp CCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGG
T ss_pred cccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHH
Confidence 4679999999984 333557999999999865322112223467777533221 4455443
No 118
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=81.82 E-value=0.87 Score=38.15 Aligned_cols=44 Identities=25% Similarity=0.494 Sum_probs=36.3
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccc
Q 016887 143 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI 191 (381)
Q Consensus 143 lEFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnv 191 (381)
|-+||.-.++-..+-|++..+- .+..|+|+|.|+.++.|.|+++
T Consensus 18 MKLEAvD~~~p~~icvATV~~v-----~g~rl~v~fDGw~~~~D~W~~~ 61 (107)
T 1wjq_A 18 MKLEVVDKRNPMFIRVATVADT-----DDHRVKVHFDGWNNCYDYWIDA 61 (107)
T ss_dssp CEEEEECTTCTTCEEEEEEEEE-----CSSCEEEECSSSCGGGCEEECT
T ss_pred CEEEEEcCCCCCcEEeEEEEEe-----cCCEEEEEeCCCCCcCCEEEEC
Confidence 7899999888887777766542 3467999999999999999886
No 119
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=81.46 E-value=3.2 Score=35.59 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=39.3
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCcc--ccccCcce
Q 016887 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKV 268 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~e--e~v~l~kv 268 (381)
.+..|+.|+||.. +-.||.|.|++|.... .. ..-.|.|-|.-=+.- |=|+..+|
T Consensus 12 ~~~vGe~v~~~~~---d~~~y~AkIl~i~~~~--~~-~~~~YyVHY~gwNkR~DEWV~~~ri 67 (133)
T 1wgs_A 12 TVEIGETYLCRRP---DSTWHSAEVIQSRVND--QE-GREEFYVHYVGFNRRLDEWVDKNRL 67 (133)
T ss_dssp CCCTTSEEEEEET---TTEEEEEEEEEEEEET--TT-TEEEEEEECTTTCSSCCEEECTTTS
T ss_pred ccCCCCEEEEEeC---CCCEEEEEEEEEEecc--CC-CceEEEEeccCcCCCceeecChhhc
Confidence 4789999999984 3489999999988643 12 235788988755444 55777776
No 120
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=81.31 E-value=2.6 Score=32.83 Aligned_cols=49 Identities=10% Similarity=0.056 Sum_probs=34.7
Q ss_pred CCCCCC---CCCCccccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCC
Q 016887 1 MGRPPS---NGGPAFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (381)
Q Consensus 1 mGrPps---~~~pRtrFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS 49 (381)
||...+ .......||++|+.+|.++|... ++.+++..+...+-..++..
T Consensus 1 M~~~~~~~~~~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~ 55 (161)
T 3fwb_A 1 MSKNRSSLQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFE 55 (161)
T ss_dssp --------CTTTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCC
T ss_pred CCCCccccccCCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC
Confidence 555543 24566789999999999999853 46789998888888888764
No 121
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=81.07 E-value=0.74 Score=30.38 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=28.9
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchh
Q 016887 14 FNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72 (381)
Q Consensus 14 FT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~ 72 (381)
|+.+++.++-+++.+ + . ...+||+.||+|. .-|..|++.-..
T Consensus 6 ~~~~~~~~i~~l~~~--g--~---s~~~ia~~lgvs~----------~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEK--G--H---PRQQLAIIFGIGV----------STLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHT--T--C---CHHHHHHTTSCCH----------HHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHc--C--C---CHHHHHHHHCCCH----------HHHHHHHHHccc
Confidence 566677666666654 2 2 3578999999984 679999875443
No 122
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=80.65 E-value=3 Score=32.63 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=44.1
Q ss_pred CCCccccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 8 GGPAFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 8 ~~pRtrFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
......+|.+|+.+|.++|... ++.+++..+...+-+.+|.. ++..+|+.+|+
T Consensus 24 ~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~--------~~~~ei~~l~~ 79 (100)
T 2lv7_A 24 EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYM--------PNEVELEVIIQ 79 (100)
T ss_dssp TCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCC--------CCTTTHHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 4455679999999999999864 67899999999999999875 47788998886
No 123
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=80.30 E-value=3.8 Score=31.97 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=39.9
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcceeecc
Q 016887 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRP 272 (381)
Q Consensus 208 ~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC~rp 272 (381)
..+++|+++++.- .++..||-|.|++|... . .+.|.|..=.+.+.|++.+|...|
T Consensus 26 ~~~~~G~~c~a~~--~~d~~wyRA~I~~~~~~----~----~~~V~fvDyGn~e~v~~~~lr~l~ 80 (94)
T 3fdr_A 26 LTVHVGDIVAAPL--PTNGSWYRARVLGTLEN----G----NLDLYFVDFGDNGDCPLKDLRALR 80 (94)
T ss_dssp CCCCTTCEEEEEE--TTTTEEEEEEEEEECTT----S----CEEEEETTTCCEEEECGGGCEECC
T ss_pred CCCCCCCEEEEEE--CCCCeEEEEEEEEECCC----C----eEEEEEEcCCCeEEEEHHHhhhcC
Confidence 4678999887632 23578999999999531 1 356777777777889988887665
No 124
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=80.16 E-value=5.3 Score=33.79 Aligned_cols=60 Identities=17% Similarity=0.414 Sum_probs=38.5
Q ss_pred cccCCceEEEeeec-CCcceEeeEEEeeeeecccCCCCc-ceEEEEEeecCCc--cccccCccee
Q 016887 209 AVLPGDLILCFQEG-KDQALYFDAHVLDAQRRRHDVRGC-RCRFLVRYDHDQS--EEIVPLRKVC 269 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg-~d~alyyDA~V~~Vqrr~Hd~~gC-rC~FlVrw~hdp~--ee~v~l~kvC 269 (381)
.+..|+.|+||+.. ....++|+|.|++|....-+ .|- .-.++|.|.-=++ .|-|+-.+|-
T Consensus 19 ~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~-~g~~~~~Y~VHY~GWn~~wDEWV~e~rll 82 (110)
T 3m9p_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDE-KGRKIPEYLIHFNGWNRSWDRWAAEDHVL 82 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECT-TCCEEEEEEEEETTSCGGGCEEEEGGGEE
T ss_pred cccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCc-ccccceEEEEEECCCCcchhhccCHhhhh
Confidence 47799999999653 34568999999999976422 232 2357788753222 1556655443
No 125
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=79.69 E-value=1.2 Score=39.19 Aligned_cols=57 Identities=25% Similarity=0.391 Sum_probs=38.8
Q ss_pred EEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccccccc-----ccCCccccccccc
Q 016887 145 FEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVR-----QRSLPCEASECVA 209 (381)
Q Consensus 145 FEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR-----~rS~plE~sEC~~ 209 (381)
.=|+.+.||.||-+.+. + .. ++.++.|.|..||+.+ +++.. .+| ..++|.|+.+|.-
T Consensus 72 c~a~~~~d~~wyRa~V~-~--~~--~~~~~~V~~vDyG~~~--~v~~~-~l~~l~~~f~~lP~qA~~c~L 133 (201)
T 4b9w_A 72 CCAFFSGDGNWYRALVK-E--IL--PSGNVKVHFVDYGNVE--EVTTD-QLQAILPQFLLLPFQGMQCWL 133 (201)
T ss_dssp EEEEETTTTEEEEEEEE-E--EC--TTSCEEEEETTTCCEE--EECGG-GEEECCGGGGSSCBCCEEEEE
T ss_pred EEEEECCCCeEEEEEEE-E--EC--CCCeEEEEEEccCCEE--EEEHH-HhccChHhHcccchhhEEEEE
Confidence 34666779999988764 1 11 2356999999999974 44432 222 2578999999975
No 126
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=78.91 E-value=1.3 Score=39.81 Aligned_cols=55 Identities=25% Similarity=0.386 Sum_probs=38.4
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccc------cccccccCCccccccccc
Q 016887 146 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI------KRHVRQRSLPCEASECVA 209 (381)
Q Consensus 146 EA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnv------k~rvR~rS~plE~sEC~~ 209 (381)
=|+-+.||.||-+.+. + .. ++.++.|.|..||+.+ +++. ...| .++|.|+.+|.-
T Consensus 73 ~a~~~~d~~WyRa~V~-~--~~--~~~~~~V~~vDyGn~~--~v~~~~l~~l~~~f--~~lP~qA~~c~L 133 (226)
T 4b9x_A 73 CAFFSGDGNWYRALVK-E--IL--PSGNVKVHFVDYGNVE--EVTTDQLQAILPQF--LLLPFQGMQCWL 133 (226)
T ss_dssp EEEETTTTEEEEEEEE-E--EC--SSSEEEEECTTTCCEE--EEEGGGEECCCGGG--SSSCBCCEEEEE
T ss_pred EEEECCCCeEEEEEEE-E--EC--CCCeEEEEEEecCCEE--EEEHHHhccChHHH--cccccceEEEEE
Confidence 3666679999988764 1 11 3357999999999974 3443 2333 578999999975
No 127
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=78.51 E-value=4.2 Score=33.41 Aligned_cols=51 Identities=8% Similarity=0.152 Sum_probs=41.3
Q ss_pred CccccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 10 PAFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 10 pRtrFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
.+..+|++||++|.++|... ++.+++..+...+-++|+..+ +..+++..+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~--------~~~~~~~~~~ 59 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP--------PDDELNAMLK 59 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC--------CHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc--------cHHHHHHHHH
Confidence 46789999999999999863 578999999999999999865 6666766554
No 128
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=77.66 E-value=1.9 Score=38.69 Aligned_cols=55 Identities=25% Similarity=0.456 Sum_probs=33.7
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccc------cccccccCCcccccccc
Q 016887 146 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI------KRHVRQRSLPCEASECV 208 (381)
Q Consensus 146 EA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnv------k~rvR~rS~plE~sEC~ 208 (381)
-|+-+ ||.||-+.+.--. . +..+.|.|..||+.+ +++. ...|..+.+|.+..+|.
T Consensus 73 ~a~~~-d~~wyRa~V~~~~----~-~~~~~V~~vDyGn~~--~v~~~~lr~l~~~~~~~~lp~~a~~~~ 133 (246)
T 2hqx_A 73 IAKFV-DGEWYRARVEKVE----S-PAKIHVFYIDYGNRE--VLPSTRLGTLSPAFSTRVLPAQATEYA 133 (246)
T ss_dssp EEECT-TSCEEEEEEEEEE----E-TTEEEEEETTTCCEE--EECGGGEECCCGGGSTTTSCCCC----
T ss_pred EEEcC-CCCEEEEEEEEEc----C-CCeEEEEEEeCCCeE--EEeHHHhhcCCHhHcCCCCchhhhhhh
Confidence 34434 9999988765221 1 257999999999975 3332 24444447899999994
No 129
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=76.98 E-value=0.84 Score=36.85 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=30.3
Q ss_pred eehhhhhhcccc-CCCCCeEEEEecCCCC-Ccccccccc
Q 016887 156 YDVSAFLAQRNF-DTADPEVQVRFAGFGA-EEDEWVNIK 192 (381)
Q Consensus 156 YDV~~fL~~r~l-~tge~elrVrf~gFg~-eeDEwvnvk 192 (381)
|.|...|.+|+. ..|..+++|+..||++ +++-|-+..
T Consensus 31 y~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~ 69 (92)
T 2rso_A 31 YVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEA 69 (92)
T ss_dssp CCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGG
T ss_pred EEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHH
Confidence 778888999975 4588999999999996 677897654
No 130
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=76.98 E-value=5.8 Score=32.26 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=39.4
Q ss_pred cccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCcc--ccccCcce
Q 016887 207 CVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKV 268 (381)
Q Consensus 207 C~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~e--e~v~l~kv 268 (381)
-..+..|+.|+|++ +-.+|.|.|++|.... | .-.|.|-|..=+.- |=|+..+|
T Consensus 21 ~~~~~vG~kv~v~~----~~~~y~AkIl~ir~~~----~-~~~YyVHY~g~NkRlDEWV~~~rl 75 (92)
T 2ro0_A 21 VDDIIIKCQCWVQK----NDEERLAEILSINTRK----A-PPKFYVHYVNYNKRLDEWITTDRI 75 (92)
T ss_dssp TTSCCTTCEEEEEE----TTEEEEEEEEEEECSS----S-SCEEEEEETTSCTTSCEEEEGGGE
T ss_pred cccccCCCEEEEEE----CCEEEEEEEEEEEEcC----C-CcEEEEEeCCcCcccccccCHhHc
Confidence 34688999999996 4589999999998642 3 34688988876665 44666665
No 131
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=76.76 E-value=4.7 Score=36.26 Aligned_cols=69 Identities=14% Similarity=0.210 Sum_probs=51.4
Q ss_pred cccccccccCCceEEEeeecCCcceEeeEEEeeeeecccC-----------CCCcceEEEEEeecCCccccccCcceeec
Q 016887 203 EASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHD-----------VRGCRCRFLVRYDHDQSEEIVPLRKVCRR 271 (381)
Q Consensus 203 E~sEC~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd-----------~~gCrC~FlVrw~hdp~ee~v~l~kvC~r 271 (381)
-+.+|.--+.||+|=|-..+ .-.||-|+|+.|.|+.-. ..++.|.+-|.|+..|..+.|.+.-...|
T Consensus 4 ~d~~~glYKinelVDarD~~--~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iR 81 (161)
T 3db3_A 4 DETELGLYKVNEYVDARDTN--MGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVR 81 (161)
T ss_dssp CCBCCCSSCTTCEEEEECTT--TCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEE
T ss_pred cccccceEEecceeeeeccC--CCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhccc
Confidence 45567778899999886532 457999999999997432 23689999999999999888777666777
Q ss_pred cc
Q 016887 272 PE 273 (381)
Q Consensus 272 p~ 273 (381)
|-
T Consensus 82 pR 83 (161)
T 3db3_A 82 AR 83 (161)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 132
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=75.27 E-value=2.3 Score=37.07 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=22.6
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeee
Q 016887 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQR 238 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqr 238 (381)
.+.+|++|+||+ .-++|+|.|++|..
T Consensus 9 ~f~~gekvl~~h----g~llYeAKVl~v~~ 34 (136)
T 2k3y_A 9 EFALGGRVLAFH----GPLMYEAKILKIWD 34 (136)
T ss_dssp SCCTTSEEEEEC----SSCEEEEEEEEEEE
T ss_pred ccCCCCEEEEEE----CCeeEEEEEEEEEe
Confidence 577999999999 24699999999986
No 133
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=74.14 E-value=0.82 Score=35.56 Aligned_cols=40 Identities=25% Similarity=0.553 Sum_probs=34.2
Q ss_pred CceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 153 GAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 153 gAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
..-|.|.-.|.+|....|..+++|+..||..+++-|-+..
T Consensus 11 ~~~y~VE~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~ 50 (78)
T 2dnt_A 11 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQ 50 (78)
T ss_dssp SCSCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETT
T ss_pred CceEEEEEEEEEEEcCCCcEEEEEEECCCCccCCceecHH
Confidence 3457888889999777888999999999999999998754
No 134
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=73.43 E-value=4.1 Score=28.63 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=28.4
Q ss_pred CCCCCCCCCCc-----cccCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 016887 1 MGRPPSNGGPA-----FRFNPAEVTEMEGILQEHHNAMPSREILV 40 (381)
Q Consensus 1 mGrPps~~~pR-----trFT~~QI~eLEk~F~e~~n~Yp~r~~rq 40 (381)
||||.+..++| ++||++|.+.|++..+.. +..++.-.|+
T Consensus 4 ~~R~k~~~r~r~~~i~vRlt~eE~~~l~~~A~~~-g~s~SeyiR~ 47 (51)
T 2ba3_A 4 AVRKKSEVRQKTVVRTLRFSPVEDETIRKKAEDS-GLTVSAYIRN 47 (51)
T ss_dssp TTBCTTCCCCCSEEEEEEECHHHHHHHHHHHHHH-TCCHHHHHHH
T ss_pred ccCCCCCCCcCceeEEEEECHHHHHHHHHHHHHh-CCCHHHHHHH
Confidence 69999764444 489999999999999986 3444444443
No 135
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.42 E-value=5 Score=32.39 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=41.6
Q ss_pred ccccCCceEEEeee-cCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCcc--ccccCcceee
Q 016887 208 VAVLPGDLILCFQE-GKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKVCR 270 (381)
Q Consensus 208 ~~v~~Gd~VcCfqe-g~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~e--e~v~l~kvC~ 270 (381)
..+..|+.|+|++. ...+-.+|.|.|++|.... ..-.|.|-|..-+.- |=|+..+|-.
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~-----~~~~YyVHY~g~NkRlDEWV~~~rl~~ 68 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDIS-----GRKLFYVHYIDFNRRLDEWVTHERLDL 68 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECCSS-----SCCCEEEEECSSCSCCCEEECTTTBCG
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcC-----CCcEEEEEeCCCCcccccccCHhHccc
Confidence 35789999999985 3446689999999988632 234588888876655 5566666643
No 136
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=73.04 E-value=1.5 Score=33.36 Aligned_cols=40 Identities=13% Similarity=0.337 Sum_probs=33.9
Q ss_pred CceeehhhhhhccccCCCCCe-EEEEecCCCCCcccccccc
Q 016887 153 GAWYDVSAFLAQRNFDTADPE-VQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 153 gAWYDV~~fL~~r~l~tge~e-lrVrf~gFg~eeDEwvnvk 192 (381)
.-=|.|.-.|.+|....|..+ +.|+..||+.+++-|-+..
T Consensus 6 ~~ey~VE~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~e 46 (70)
T 1g6z_A 6 QEEYEVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPE 46 (70)
T ss_dssp SCSSCCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGG
T ss_pred CceEEEEEEEEEEEcCCCcEEEEEEEECCCCCCCCceecHH
Confidence 344789999999976668888 9999999999999998764
No 137
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=71.86 E-value=6.7 Score=32.22 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=38.7
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCcc--ccccCcce
Q 016887 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKV 268 (381)
Q Consensus 208 ~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~e--e~v~l~kv 268 (381)
..+..|+.|+|+. +-.+|.|.|++|... .| .-.|.|-|..-+.- |=|+..+|
T Consensus 24 ~~~~vG~kv~v~~----~~~~yeAeIl~ir~~----~g-~~~YYVHY~g~NkRlDEWV~~~RI 77 (94)
T 2rnz_A 24 DDIIIKCQCWVQK----NDEERLAEILSINTR----KA-PPKFYVHYVNYNKRLDEWITTDRI 77 (94)
T ss_dssp GGCCTTEEEEEEC----SSCEEEEEEEEEECS----SS-SCEEEEECTTSCSTTCEEEETTTB
T ss_pred ccccCCCEEEEEE----CCEEEEEEEEEEEEc----CC-CcEEEEEeCCcCcccccccCHHHc
Confidence 4578999999996 447999999999864 23 34688888876655 44666665
No 138
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=71.44 E-value=6.5 Score=30.13 Aligned_cols=48 Identities=10% Similarity=0.243 Sum_probs=36.4
Q ss_pred cCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhc
Q 016887 14 FNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (381)
Q Consensus 14 FT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQN 69 (381)
||++|+.+|.++|... ++.+++..+...+-..++... +..+|+..|+.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~~~~~ 51 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNP--------TDEYLEGMMSE 51 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCC--------CHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCC--------CHHHHHHHHHh
Confidence 7899999999999753 467899999888888888753 44555554443
No 139
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=70.00 E-value=5.9 Score=28.14 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=32.5
Q ss_pred CccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhc
Q 016887 10 PAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (381)
Q Consensus 10 pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQN 69 (381)
.+..||++.-.++...++. + +.......++|++||+++ .+|..|...
T Consensus 2 ~r~~ys~efK~~~~~~~~~--g-~s~~~~~~~vA~~~gIs~----------~tl~~W~~~ 48 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRN--D-NDCKGNQRATARKYNIHR----------RQIQKWLQC 48 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHH--C-TTTTTCHHHHHHHTTSCH----------HHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHHHc--C-CCcchHHHHHHHHHCcCH----------HHHHHHHHH
Confidence 3457999988888555544 2 221223679999999985 889999754
No 140
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=69.89 E-value=4.3 Score=30.15 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=37.9
Q ss_pred CccccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 10 PAFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 10 pRtrFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
....++.+++.+|.++|... ++.+++..+...+-..++++ ..+|+.+|+
T Consensus 17 ~~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~----------~~~~~~~~~ 68 (91)
T 2pmy_A 17 QGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVR----------PADAEAVFQ 68 (91)
T ss_dssp --CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCC----------HHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcC----------HHHHHHHHH
Confidence 34469999999999999753 46789999988888888765 467887775
No 141
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=69.85 E-value=3.4 Score=34.69 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=39.8
Q ss_pred ccccCHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 11 AFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 11 RtrFT~~QI~eLEk~F~e---~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
+..||++||++|.++|.. .++.+++..+...+-..+|..+ ++.+|+..|+
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~--------~~~~~~~~~~ 54 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP--------SEAEVNDLMN 54 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC--------CHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh--------hHHHHHHHHH
Confidence 467999999999999985 3577999999999989998864 5566665543
No 142
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=69.68 E-value=7.5 Score=27.96 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=39.6
Q ss_pred ccccCHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCccccCCcccccch---hHhhhh
Q 016887 11 AFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQ---VWNWFQ 68 (381)
Q Consensus 11 RtrFT~~QI~eLEk~F~e---~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQ---Vk~WFQ 68 (381)
...||++|+.+|.++|.. .++.+++..+...+-..++.. ++..+ |+.+|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~--------~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQT--------YTKRETEAIMKEAR 60 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCC--------CSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCC--------CCHHHHHHHHHHHH
Confidence 456889999999999975 346799999999998888764 36677 777775
No 143
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.48 E-value=20 Score=26.82 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=43.6
Q ss_pred CccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhhhccCCCC
Q 016887 10 PAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRAKSIKSPG 83 (381)
Q Consensus 10 pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kkk~~~~p~ 83 (381)
.+-.||.+|-..|++++...+........=..||+.|.- | |.+||+.-|||-..+..+.....|+
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~---R------t~~qcr~r~~~~l~~~~k~g~~~pg 71 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN---R------TAKQVASQVQKYFIKLTKAGIPVSG 71 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS---S------CHHHHHHHHHHHHGGGSTTCSCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC---C------CHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 345799999999999999853211123678899999952 1 4589997777765555444433333
No 144
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=69.44 E-value=2.8 Score=35.75 Aligned_cols=45 Identities=13% Similarity=0.314 Sum_probs=36.7
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCC--Ccccccccc
Q 016887 143 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGA--EEDEWVNIK 192 (381)
Q Consensus 143 lEFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~--eeDEwvnvk 192 (381)
|-+||.-.++-..|=|++...-. ..-|+|||.|+.+ .+|-|+++.
T Consensus 16 mKLEa~D~~~p~~~~vAtV~~v~-----g~rl~l~~dG~~~~~~~D~W~~~~ 62 (127)
T 1wjr_A 16 SLIELQDSQNPFQYWIVSVIENV-----GGRLRLRYVGLEDTESYDQWLFYL 62 (127)
T ss_dssp CEEEEECSSCSSCEEEEECCCEE-----TTEEEECBTTCSSCCSSCEEEETT
T ss_pred CEeEEecCCCCCcEEEEEEeeee-----CCEEEEEecCCCCCCCCCEeEeCC
Confidence 67888888898888888776532 2579999999999 579999875
No 145
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=69.35 E-value=9 Score=29.22 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 13 RFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
.||++|+.+|+++|... ++.+++..+...+...+++.. +..++..+|+
T Consensus 1 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~--------~~~~~~~l~~ 51 (149)
T 2mys_C 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNP--------TNAEINKILG 51 (149)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 37899999999999753 467899988888888887753 5566776664
No 146
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=68.92 E-value=1.3 Score=34.19 Aligned_cols=40 Identities=18% Similarity=0.376 Sum_probs=32.9
Q ss_pred CCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 152 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 152 DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
+...|.|.-.|.+|. ..|..++.|+..||+.+++.|-+..
T Consensus 13 ~~~ey~VEkIld~R~-~~g~~eYlVKWkGy~~~~~TWEp~e 52 (69)
T 1q3l_A 13 EEEEYAVEKIIDRRV-RKGMVEYYLKWKGYPETENTWEPEN 52 (69)
T ss_dssp ---CEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred CCCcEEEEEEEEEEE-ECCeEEEEEEEcCCCcccCCccchH
Confidence 566889999999986 5688999999999999999998764
No 147
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=68.80 E-value=5.5 Score=31.96 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=39.5
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcceeecc
Q 016887 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRP 272 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC~rp 272 (381)
.+++|+++++.. .++..||-|.|++|... . .+.|+|..=.+.+.|++.+|...|
T Consensus 32 ~~~~G~~c~a~~--~~d~~wyRA~V~~~~~~----~----~~~V~fvDyGn~e~v~~~~Lr~l~ 85 (110)
T 2diq_A 32 TVHVGDIVAAPL--PTNGSWYRARVLGTLEN----G----NLDLYFVDFGDNGDCPLKDLRALR 85 (110)
T ss_dssp CCCTTCEEEECC--TTTCSCEEEEECCCCSS----S----CEEEEETTTCCEEEECGGGCEECC
T ss_pred CCCCCCEEEEEE--CCCCeEEEEEEEEECCC----C----eEEEEEEeCCCeEEEehHHhhcCc
Confidence 567999877632 23557999999998642 1 456888777777889999887665
No 148
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=68.69 E-value=1.5 Score=31.88 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=31.1
Q ss_pred eehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 156 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 156 YDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
|.|.-.|.+|. ..|..+..|+..||+.+++.|.+..
T Consensus 4 y~VE~Il~~r~-~~g~~~YlVKWkgy~~~~~TWEp~~ 39 (55)
T 1pfb_A 4 YAAEKIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEV 39 (55)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEE-eCCeEEEEEEEcCCCCccCcEeEHH
Confidence 67888888886 4678999999999999999998765
No 149
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=68.62 E-value=1.5 Score=32.42 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=30.7
Q ss_pred eehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 156 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 156 YDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
|.|.-.|.+|. ..|..++.|+..||+.+++-|-+..
T Consensus 4 y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~ 39 (59)
T 3fdt_A 4 YVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEK 39 (59)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEE-eCCeEEEEEEEeCCCcccCCccchh
Confidence 67788888885 4788999999999999999997754
No 150
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=68.10 E-value=2.7 Score=36.11 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=31.0
Q ss_pred eEEeeccCCC----ceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccccccccc
Q 016887 144 EFEAKSARDG----AWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQR 198 (381)
Q Consensus 144 EFEA~S~~Dg----AWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~r 198 (381)
+-|+++..++ .||-..+..-. | .-..|.|.||+...+||++.. |+|+.
T Consensus 66 ~VEV~~~~~d~ep~gWw~a~I~~~k-----g-~f~~V~y~~~~~~~~EiV~~~-rlR~~ 117 (128)
T 3h8z_A 66 EVEVYSRANEQEPCGWWLARVRMMK-----G-DFYVIEYAACDATYNEIVTLE-RLRPV 117 (128)
T ss_dssp EEEEEECC---CCCEEEEEEEEEEE-----T-TEEEEEETTC----CEEECGG-GEEEC
T ss_pred EEEEEecCCCCCcCccEEEEEEEee-----C-CEEEEEEcCCCCCcceEEehh-heEeC
Confidence 4567776677 89987764331 2 458999999999999999955 88875
No 151
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=67.72 E-value=9.7 Score=29.94 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=33.7
Q ss_pred CCCCCCCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhc
Q 016887 1 MGRPPSNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (381)
Q Consensus 1 mGrPps~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQN 69 (381)
||||+ .+|.++..++-.++.. + + ...++|+.||+|. ..|..|++.
T Consensus 1 Mgr~~-------~~s~~~r~~i~~~~~~--G-~----s~~~ia~~lgis~----------~Tv~r~~~~ 45 (141)
T 1u78_A 1 MPRGS-------ALSDTERAQLDVMKLL--N-V----SLHEMSRKISRSR----------HCIRVYLKD 45 (141)
T ss_dssp -CCSC-------CCCHHHHHHHHHHHHT--T-C----CHHHHHHHHTCCH----------HHHHHHHHS
T ss_pred CCCcc-------cCCHHHHHHHHHHHHc--C-C----CHHHHHHHHCcCH----------HHHHHHHHc
Confidence 78763 5788888888888755 2 2 3578999999985 789999974
No 152
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=67.59 E-value=1.5 Score=31.79 Aligned_cols=36 Identities=17% Similarity=0.455 Sum_probs=30.6
Q ss_pred eehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 156 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 156 YDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
|.|.-.|.+|. ..|..++.|+..||+.+++-|-+..
T Consensus 4 y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~ 39 (54)
T 3h91_A 4 FAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEE 39 (54)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred eEEEEEEEEEE-eCCcEEEEEEEeCCCCcCCCeecHh
Confidence 77788888885 5788999999999999999997654
No 153
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=67.44 E-value=1.5 Score=31.69 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=30.5
Q ss_pred eehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 156 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 156 YDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
|.|.-.|.+|. ..|..++.|+..||+.+++-|-+..
T Consensus 4 y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~ 39 (54)
T 3i91_A 4 FAAEALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPEE 39 (54)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEE-eCCcEEEEEEEeCCCcccCcccchh
Confidence 77788888885 4688999999999999999997654
No 154
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=67.09 E-value=1.3 Score=33.02 Aligned_cols=36 Identities=19% Similarity=0.518 Sum_probs=30.5
Q ss_pred eehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 156 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 156 YDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
|.|.-.|.+|. ..|..++.|+..||+.+++-|-+..
T Consensus 5 y~VE~Il~~r~-~~g~~~YlVkWkGy~~~~~TWEp~~ 40 (62)
T 3lwe_A 5 FEVEKILDMKT-EGGKVLYKVRWKGYTSDDDTWEPEI 40 (62)
T ss_dssp CCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEHH
T ss_pred EEEEEEEEEEE-cCCeEEEEEEEeCCCCcCCCeeeHh
Confidence 67788888885 5788999999999999999997654
No 155
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=66.72 E-value=9.6 Score=27.71 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=38.1
Q ss_pred cccCHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 12 FRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e---~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
..++++++.+|.++|.. .++.+++..+...+-..++.. ++..+|+.+|+
T Consensus 12 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~l~~ 63 (90)
T 1avs_A 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN--------PTKEELDAIIE 63 (90)
T ss_dssp HHBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC--------CCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 35999999999999985 346789998888888888764 35667776664
No 156
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=66.43 E-value=3.3 Score=35.82 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=35.4
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccccccccc-----cCCccccccccc
Q 016887 146 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQ-----RSLPCEASECVA 209 (381)
Q Consensus 146 EA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~-----rS~plE~sEC~~ 209 (381)
-|+-+.||.||-+.+.-- .+..+.|.|..||+.+- ++.. .+|+ .++|.+..+|+-
T Consensus 59 ~a~~~~d~~wyRa~V~~v------~~~~~~V~~vDyG~~~~--v~~~-~l~~l~~~~~~~p~~a~~~~L 118 (218)
T 2wac_A 59 AAQFTLDNQWYRAKVERV------QGSNATVLYIDYGNKET--LPTN-RLAALPPAFSSEKPYATEYAL 118 (218)
T ss_dssp EEECTTTCCEEEEEEEEE------ETTEEEEEETTTCCEEE--EEGG-GEEECCGGGSSSCCSEEEEEE
T ss_pred EEEECCCCeEEEEEEEEe------cCCeEEEEEEecCCeEE--EchH-HcccCChhhccCCcceeEEEE
Confidence 344456999998876522 12679999999999753 3322 2332 356777777753
No 157
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=66.21 E-value=1.5 Score=31.94 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=30.2
Q ss_pred eehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 156 YDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 156 YDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
|.|.-.|.+|.. .|..++.|+..||+.+++-|-+..
T Consensus 3 y~VE~Il~~r~~-~g~~~YlVkWkGy~~~~~TWEp~~ 38 (55)
T 3f2u_A 3 YVVEKVLDRRVV-KGKVEYLLKWKGFSDEDNTWEPEE 38 (55)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEETTSCGGGCEEEEGG
T ss_pred EEEEEEEEEEEe-CCeEEEEEEEEeCCCccCCeeEHH
Confidence 567777888854 688999999999999999998765
No 158
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=65.96 E-value=1.9 Score=33.63 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=32.9
Q ss_pred CCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 152 DGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 152 DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
+..-|.|.-.|..|. ..|..++.|+..||+.+++.|.+..
T Consensus 17 ~~~eyeVEkIld~r~-~~g~~~YlVKWkGy~~~~nTWEP~e 56 (72)
T 1pdq_A 17 VDLVYAAEKIIQKRV-KKGVVEYRVKWKGWNQRYNTWEPEV 56 (72)
T ss_dssp -CEEEEEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEEGG
T ss_pred CCceEEEEEEEEEEE-eCCcEEEEEEECCCCCccCeecchH
Confidence 345678888888885 5678999999999999999998765
No 159
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=65.77 E-value=8.7 Score=29.91 Aligned_cols=51 Identities=8% Similarity=0.124 Sum_probs=37.5
Q ss_pred CccccCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 10 PAFRFNPAEVTEMEGILQEH----HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 10 pRtrFT~~QI~eLEk~F~e~----~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
+...||++|+.+|+++|... ++.+++..+...+-..++... +..+++.+|+
T Consensus 3 ~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~--------~~~~~~~l~~ 57 (158)
T 2jnf_A 3 DVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQ--------TKSTIRQLID 57 (158)
T ss_dssp CSTTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCSC--------SHHHHHHHHH
T ss_pred chhhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 34568999999999999854 357899988888888887643 4455655553
No 160
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=64.80 E-value=2.4 Score=36.99 Aligned_cols=20 Identities=25% Similarity=0.642 Sum_probs=18.7
Q ss_pred eEEEEecCCCCCcccccccc
Q 016887 173 EVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 173 elrVrf~gFg~eeDEwvnvk 192 (381)
+.+|||.||..--||||...
T Consensus 78 ~Y~VHY~GWn~rwDEWV~~d 97 (136)
T 2k3y_A 78 SFFIHYQGWKSSWDEWVGYD 97 (136)
T ss_dssp EEEECCTTSCGGGCEEEETT
T ss_pred eEEEEeCCcCCcceeeecHh
Confidence 89999999999999999864
No 161
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=64.11 E-value=15 Score=28.71 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=38.6
Q ss_pred CccccCHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhc
Q 016887 10 PAFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (381)
Q Consensus 10 pRtrFT~~QI~eLEk~F~e---~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQN 69 (381)
....||++|+.+|+++|.. .++.+++..+...+-..++... +..+++..|++
T Consensus 8 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~~~~~ 62 (156)
T 1wdc_B 8 VLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAP--------DDKELTAMLKE 62 (156)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCC--------CHHHHHHHHTT
T ss_pred hhccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCC--------CHHHHHHHHHh
Confidence 3457999999999999975 3467899999888888887653 56677777754
No 162
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=63.95 E-value=15 Score=27.89 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=31.9
Q ss_pred cccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCc
Q 016887 12 FRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESP 50 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~ 50 (381)
..||++|+.+|+++|... ++.+++..+...+-..++...
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~ 44 (153)
T 3ox6_A 3 RSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMP 44 (153)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCCC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 358999999999999763 568999998888888887643
No 163
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=63.19 E-value=14 Score=28.71 Aligned_cols=52 Identities=8% Similarity=0.130 Sum_probs=38.6
Q ss_pred CCccccCHHHHHHHHHHHHHh---c-CCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 9 GPAFRFNPAEVTEMEGILQEH---H-NAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 9 ~pRtrFT~~QI~eLEk~F~e~---~-n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
.....||+.|+.+|.++|... + +.+++..+...+-..++... +..+++.+|+
T Consensus 7 ~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~--------~~~~~~~~~~ 62 (161)
T 1dtl_A 7 AAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNP--------TPEELQEMID 62 (161)
T ss_dssp TGGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCC--------CHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCC--------CHHHHHHHHH
Confidence 345679999999999999864 3 56899988888888887643 4455555553
No 164
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=63.18 E-value=8.7 Score=26.71 Aligned_cols=47 Identities=6% Similarity=0.081 Sum_probs=34.3
Q ss_pred cCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 14 FNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 14 FT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
+|++++.+|.++|... ++.+++..+...+-..++.. ++..+|+.+|+
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFD--------VKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCC--------CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 5788999999999753 35688888888888888764 34566666664
No 165
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=63.11 E-value=16 Score=28.98 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=37.3
Q ss_pred CccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhh
Q 016887 10 PAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYA 73 (381)
Q Consensus 10 pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K 73 (381)
.|..||.++-.++=+.+.+. .... ..+||+.||++. ..|..|..+++.-
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~--g~~~---~~~~A~~~gvs~----------stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEEN--PDLR---KGEIARRFNIPP----------STLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHC--TTSC---HHHHHHHHTCCH----------HHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHC--CCCc---HHHHHHHhCCCH----------HHHHHHHhchhhh
Confidence 57789999998887777652 3333 347999999975 8899999887653
No 166
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=62.98 E-value=3.1 Score=35.19 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=19.0
Q ss_pred CeEEEEecCCCCCcccccccc
Q 016887 172 PEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 172 ~elrVrf~gFg~eeDEwvnvk 192 (381)
+++.|+|.|+..--||||...
T Consensus 59 ~~Y~VHY~GWn~~WDEWV~~d 79 (110)
T 3oa6_A 59 PEYLIHFNGWNRSWDRWAAED 79 (110)
T ss_dssp EEEEEEETTSCGGGCEEEEGG
T ss_pred cEEEEEECCcCcchhhccChh
Confidence 579999999999999999864
No 167
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=62.87 E-value=4.6 Score=41.02 Aligned_cols=57 Identities=25% Similarity=0.438 Sum_probs=39.0
Q ss_pred eeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCcc----ccccccccccccCCccccccccc
Q 016887 147 AKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEED----EWVNIKRHVRQRSLPCEASECVA 209 (381)
Q Consensus 147 A~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeD----Ewvnvk~rvR~rS~plE~sEC~~ 209 (381)
|+-+ ||.||-+.+.--. . +..+.|.|..||+.+- +...+...|....+|.|..+|.-
T Consensus 420 a~~~-d~~wyRa~I~~v~---~--~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~L 480 (570)
T 3bdl_A 420 AKFV-DGEWYRARVEKVE---S--PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAF 480 (570)
T ss_dssp EECT-TSCEEEEEEEEEE---E--TTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEE
T ss_pred EEEC-CCCEEEEEEEEEc---C--CCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEE
Confidence 4434 9999998876221 1 4679999999999853 22223455655566999999974
No 168
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=62.63 E-value=2.1 Score=32.03 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=32.3
Q ss_pred ceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 154 AWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 154 AWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
--|.|.-.|.+|. ..|..+++|+..||..+++-|-+..
T Consensus 9 ~ey~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~ 46 (64)
T 2dnv_A 9 RVFAAEALLKRRI-RKGRMEYLVKWKGWSQKYSTWEPEE 46 (64)
T ss_dssp CCCCCCCEEEEEE-SSSSEEEEECCSSCCCSSCCEEETT
T ss_pred ceEEEEEEEEEEE-eCCcEEEEEEECCCCcccCCccCHh
Confidence 3478888899885 5788999999999999999998764
No 169
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=62.57 E-value=3 Score=30.95 Aligned_cols=40 Identities=25% Similarity=0.453 Sum_probs=31.8
Q ss_pred CCceeehhhhhhccccCCCCC-eEEEEecCCCCCcccccccc
Q 016887 152 DGAWYDVSAFLAQRNFDTADP-EVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 152 DgAWYDV~~fL~~r~l~tge~-elrVrf~gFg~eeDEwvnvk 192 (381)
|..=|.|.-.|.+|.. .|.. ++.|+..||+.+++-|-+..
T Consensus 4 ~~~ey~VE~Il~~r~~-~g~~~~YlVkWkGy~~~~~TWEp~~ 44 (61)
T 3g7l_A 4 DADVYEVEDILADRVN-KNGINEYYIKWAGYDWYDNTWEPEQ 44 (61)
T ss_dssp -CCEEEEEEEEEEEEC-TTSCEEEEEEETTSCGGGCEEEEGG
T ss_pred CCcEEEEEEEEEEEEE-CCCEEEEEEEEeCCCCcCCceeeHh
Confidence 3445888889999864 4556 99999999999999997654
No 170
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=61.93 E-value=2.9 Score=34.78 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=21.5
Q ss_pred CCCeEEEEecCCCCCcccccccccccc
Q 016887 170 ADPEVQVRFAGFGAEEDEWVNIKRHVR 196 (381)
Q Consensus 170 ge~elrVrf~gFg~eeDEwvnvk~rvR 196 (381)
|...+.|+|.|+..--||||... |++
T Consensus 57 ~~~~Y~VHY~GWn~rwDEWV~ed-Ril 82 (101)
T 3m9q_A 57 RFYEYKIHFQGWRPSYDRAVRAT-VLL 82 (101)
T ss_dssp EEEEEEEEETTSCGGGCEEECGG-GEE
T ss_pred CceEEEEEeCCCCcCceeecCHH-Hcc
Confidence 44689999999999999999864 443
No 171
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=61.31 E-value=9.9 Score=29.62 Aligned_cols=52 Identities=6% Similarity=0.095 Sum_probs=40.2
Q ss_pred CccccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhc
Q 016887 10 PAFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (381)
Q Consensus 10 pRtrFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQN 69 (381)
....||++|+.+|.++|... ++.+++..+...+-..++.. ++..+++..|+.
T Consensus 6 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~~~~~ 60 (153)
T 2ovk_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRV--------PPDDELNAMLKE 60 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSC--------CCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCC--------CCHHHHHHHHHH
Confidence 46789999999999999853 46789998888887777764 366777776654
No 172
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=61.06 E-value=15 Score=28.39 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=35.7
Q ss_pred CCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhh
Q 016887 8 GGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWF 67 (381)
Q Consensus 8 ~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WF 67 (381)
....-.+|.+|...||+++.......+ ..=+.||+.+|-| .+||+.=|
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~--~RW~~IA~~lgRt----------~~eV~~~y 52 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTP--GRWEKIAHELGRS----------VTDVTTKA 52 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCT--THHHHHHHHHTSC----------HHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCC--cHHHHHHHHhCCC----------HHHHHHHH
Confidence 334557999999999999998432233 4578899999876 49998633
No 173
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=61.01 E-value=47 Score=25.16 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=32.1
Q ss_pred CCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhc
Q 016887 9 GPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (381)
Q Consensus 9 ~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQN 69 (381)
+.+..||.++..+.=+++.. + . ...+||+.||+|. ..|..|...
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~--g-~----s~~~iA~~~gIs~----------sTl~rW~k~ 61 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD--G-E----SKASVARDIGVPE----------STLRGWCKN 61 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH--T-C----CHHHHHHHHTCCH----------HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC--C-C----CHHHHHHHHCcCH----------HHHHHHHHH
Confidence 45668999887666666643 2 2 3668999999985 789999853
No 174
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=60.30 E-value=6.4 Score=32.52 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=35.7
Q ss_pred ccCHHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhh
Q 016887 13 RFNPAEVTEMEGILQE-----HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNW 66 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e-----~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~W 66 (381)
.+|++||++|.++|.. .+..+++..+...+-+.||..+ |+.+|+..
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~--------t~~el~~~ 52 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP--------TEAQVHQH 52 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC--------CHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC--------CHHHHHHH
Confidence 4799999999999974 2457899988888888898864 56666643
No 175
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=59.74 E-value=3.2 Score=31.88 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=31.2
Q ss_pred eeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 155 WYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 155 WYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
=|.|.-.|.+|. ..|..++.|+..||+.+++-|-+..
T Consensus 13 ey~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~ 49 (73)
T 1ap0_A 13 EYVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEE 49 (73)
T ss_dssp CCEEEEEEEEEE-CSSSEEEEEEEESSSSCCCEEEETT
T ss_pred eEEEEEEEEEEE-eCCeEEEEEEECCCCCccCcEeeHH
Confidence 467888888885 5688999999999999999998764
No 176
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=59.55 E-value=13 Score=29.18 Aligned_cols=42 Identities=5% Similarity=-0.029 Sum_probs=31.8
Q ss_pred CCCccccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCC
Q 016887 8 GGPAFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (381)
Q Consensus 8 ~~pRtrFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS 49 (381)
...+..|+++|+.+|+++|... ++.+++..+...+-..++..
T Consensus 16 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 60 (169)
T 3qrx_A 16 KKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFE 60 (169)
T ss_dssp ----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCC
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 4567889999999999999864 45788888888888888764
No 177
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=59.48 E-value=2.1 Score=33.37 Aligned_cols=38 Identities=16% Similarity=0.317 Sum_probs=31.5
Q ss_pred ceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 154 AWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 154 AWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
.=|.|.-.|..|. ..|..++.|+..||+.+++.|.+..
T Consensus 20 ~eyeVEkIld~r~-~~g~~~YlVKWkGy~~~~~TWEp~e 57 (73)
T 2k1b_A 20 QVFAVESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEE 57 (73)
T ss_dssp CCCCCSEEEEEEE-ETTEEEEEEECTTCCGGGCCEEETT
T ss_pred ceEEEEEEEEEEE-cCCcEEEEEEECCCCcccCeecchH
Confidence 3468888888885 5678899999999999999998764
No 178
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=59.43 E-value=7.4 Score=26.91 Aligned_cols=44 Identities=20% Similarity=0.100 Sum_probs=32.0
Q ss_pred CCCCCCC---CCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 016887 2 GRPPSNG---GPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKF 46 (381)
Q Consensus 2 GrPps~~---~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kf 46 (381)
|||.... +-.++++.+.+.+|+.+-+.. +...+.-.++.|.+.+
T Consensus 1 GRP~~~~~~~~i~vrl~~el~~~l~~~a~~~-g~s~s~~ir~ai~~~l 47 (55)
T 2k9i_A 1 GRPYKLLNGIKLGVYIPQEWHDRLMEIAKEK-NLTLSDVCRLAIKEYL 47 (55)
T ss_dssp CCCSSTTCCEEEEEEECHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccceEEEEcCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 8996442 344689999999999999986 4556666666666554
No 179
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=58.31 E-value=3.8 Score=34.72 Aligned_cols=49 Identities=20% Similarity=0.355 Sum_probs=31.4
Q ss_pred ceeEEeeccCCCceeehhhhhhccccC--CC--CCeEEEEecCCCCCccccccc
Q 016887 142 FMEFEAKSARDGAWYDVSAFLAQRNFD--TA--DPEVQVRFAGFGAEEDEWVNI 191 (381)
Q Consensus 142 ~lEFEA~S~~DgAWYDV~~fL~~r~l~--tg--e~elrVrf~gFg~eeDEwvnv 191 (381)
.|-|+.-.++..-||+..+. +-+.-. +| ..+++|+|.|+..--||||..
T Consensus 26 VLc~hgd~~k~~~lYeAKIl-~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~e 78 (110)
T 3m9p_A 26 VLCFEPDPTKARVLYDAKIV-DVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAE 78 (110)
T ss_dssp EEEECSCTTSCCCEEEEEEE-EEEEEECTTCCEEEEEEEEETTSCGGGCEEEEG
T ss_pred EEEEcCCCCCCCCceeeEEE-EEEeccCcccccceEEEEEECCCCcchhhccCH
Confidence 34454333344688886654 222211 12 268999999999999999975
No 180
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=57.40 E-value=13 Score=26.33 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=36.9
Q ss_pred ccccCHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 11 AFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 11 RtrFT~~QI~eLEk~F~e---~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
...|+++++.+|+++|.. .++.+++..+...+-..++.. ++..++..+|+
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--------~~~~~~~~~~~ 57 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGAN--------PTKQKISEIVK 57 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSC--------CCHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 446899999999999975 345688888888887777653 35566666664
No 181
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=57.23 E-value=20 Score=28.30 Aligned_cols=50 Identities=6% Similarity=0.119 Sum_probs=39.3
Q ss_pred cccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCC-CccccCCcccccchhHhhhhc
Q 016887 12 FRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSE-SPERKGKIMVQMKQVWNWFQN 69 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnl-S~~RaGk~~Vq~kQVk~WFQN 69 (381)
..||++|+.+|.++|... ++.+++..+...+-..++. .. +..++..+|++
T Consensus 17 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~--------~~~~~~~l~~~ 70 (166)
T 2mys_B 17 SMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNV--------KNEELDAMIKE 70 (166)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCC--------CHHHHHHHHHH
Confidence 368999999999999853 4678999988888888876 43 55677777764
No 182
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=56.63 E-value=22 Score=29.19 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=37.6
Q ss_pred cCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCcc--ccccCcce
Q 016887 211 LPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSE--EIVPLRKV 268 (381)
Q Consensus 211 ~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~e--e~v~l~kv 268 (381)
.+|..|+|++. +-.||.|.|+++..+.. .+..-.|.|-|..-+.- |=|+..+|
T Consensus 16 ~~~e~vlc~~~---dg~~yeAeIl~ir~~~~--~~~~~~YYVHY~g~NkRlDEWV~~~RL 70 (92)
T 2bud_A 16 NPDKIYFIRRE---DGTVHRGQVLQSRTTEN--AAAPDEYYVHYVGLNRRLDGWVGRHRI 70 (92)
T ss_dssp CTTSCEEEECT---TSCEEEEEEEEEECTTT--CSSCCEEEEECSSSCTTTCEEEETTTE
T ss_pred CCCCEEEEEeC---CCCEEEEEEEEEeeccC--CCCCcEEEEEeCCcccccccccCHHHh
Confidence 46889999993 34799999999886432 23456799999876654 44555554
No 183
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=56.22 E-value=6.3 Score=31.31 Aligned_cols=48 Identities=8% Similarity=0.198 Sum_probs=36.0
Q ss_pred ccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 13 RFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
-||.+||++|.++|... ++.+++..+...+-+.++..+ +..+|...|+
T Consensus 3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~--------~~~~~~~~~~ 53 (148)
T 2lmt_A 3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNP--------TEAELQDLIA 53 (148)
T ss_dssp SCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCC--------CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCc--------hHHHHHHHHH
Confidence 48999999999998763 567888888888888888754 4455554443
No 184
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=60.86 E-value=2.4 Score=33.94 Aligned_cols=39 Identities=23% Similarity=0.579 Sum_probs=28.0
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeec
Q 016887 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDH 256 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~h 256 (381)
.+..|+.|+|++.+ .+|+|.|++|.... ..-.|.|-|.-
T Consensus 12 ~~~~Gekv~~~~~~----~~y~AkIl~i~~~~-----~~~~YyVHY~G 50 (85)
T 2lrq_A 12 LFVDGERVLCFHGP----LIYEAKVLKTKPDA-----TPVEYYIHYAG 50 (85)
Confidence 57799999999843 57999999998632 22346666653
No 185
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=55.79 E-value=10 Score=28.79 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=29.9
Q ss_pred ccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCc
Q 016887 13 RFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESP 50 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~ 50 (381)
.+|++|+++|+++|... ++.+++.++...+-.+++++.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~ 43 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPS 43 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCH
Confidence 36889999999999763 467899988888777777653
No 186
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=55.38 E-value=3.6 Score=31.60 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=32.2
Q ss_pred CceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 153 GAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 153 gAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
..-|.|.-.|.+|. ..|..++.|+..||+.+++.|.+..
T Consensus 11 ~~~y~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~ 49 (74)
T 2kvm_A 11 EQVFAVESIRKKRV-RKGKVEYLVKWKGWPPKYSTWEPEE 49 (74)
T ss_dssp CCCCCEEEEEEEEE-ETTEEEEEEEETTSCGGGCEEEETT
T ss_pred CccEEEEEEEEEEE-eCCcEEEEEEEcCCCCccCeEeeHH
Confidence 34578888888885 4678999999999999999998764
No 187
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.34 E-value=3.9 Score=31.45 Aligned_cols=39 Identities=15% Similarity=0.389 Sum_probs=32.3
Q ss_pred CceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 153 GAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 153 gAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
..=|.|.-.|.+|. ..|..+++|+..||+.+++-|-+..
T Consensus 8 ~~ey~VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~ 46 (74)
T 2d9u_A 8 EQVFAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEE 46 (74)
T ss_dssp CCCCCEEEEEEEEE-ETTEEEEEEEETTSCTTTCEEEEGG
T ss_pred CccEEEEEEEEEEE-eCCcEEEEEEECCCCCccCccccHH
Confidence 34568888889885 4678999999999999999997654
No 188
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=54.94 E-value=19 Score=28.02 Aligned_cols=38 Identities=8% Similarity=0.230 Sum_probs=30.2
Q ss_pred ccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCc
Q 016887 13 RFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESP 50 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~ 50 (381)
.+|++|+.+|.++|... ++.+++..+...+.+.++..+
T Consensus 3 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~ 43 (148)
T 1exr_A 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNP 43 (148)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCC
Confidence 57899999999999753 466888888888888887653
No 189
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=53.83 E-value=23 Score=30.47 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=45.1
Q ss_pred CeEEEEecCCCCCcccccc-ccccccccCCcccccccccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEE
Q 016887 172 PEVQVRFAGFGAEEDEWVN-IKRHVRQRSLPCEASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRF 250 (381)
Q Consensus 172 ~elrVrf~gFg~eeDEwvn-vk~rvR~rS~plE~sEC~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~F 250 (381)
..++|+..+.+.+-++..+ +.+... ...|+.. -..+++|+++++.- . ++..||-|.|++|.. -++
T Consensus 16 ~~f~vq~~~~~~~l~~l~~~l~~~~~-~~~~~~~--~~~~~~g~~c~a~~-~-~d~~wyRa~V~~v~~---------~~~ 81 (218)
T 2wac_A 16 LTFFAQSVESGSKLESLMSKLHADFQ-SNPPIAG--SYTPKRGDLVAAQF-T-LDNQWYRAKVERVQG---------SNA 81 (218)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHHHHHH-HSCCCTT--SCCCCTTCEEEEEC-T-TTCCEEEEEEEEEET---------TEE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHh-hCCCCCC--CccCCcCCEEEEEE-C-CCCeEEEEEEEEecC---------CeE
Confidence 4688888765443222222 111111 1123322 23567999877532 2 245899999999953 256
Q ss_pred EEEeecCCccccccCcce
Q 016887 251 LVRYDHDQSEEIVPLRKV 268 (381)
Q Consensus 251 lVrw~hdp~ee~v~l~kv 268 (381)
.|.|....+.+.|++.++
T Consensus 82 ~V~~vDyG~~~~v~~~~l 99 (218)
T 2wac_A 82 TVLYIDYGNKETLPTNRL 99 (218)
T ss_dssp EEEETTTCCEEEEEGGGE
T ss_pred EEEEEecCCeEEEchHHc
Confidence 677765444445555444
No 190
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=53.45 E-value=22 Score=22.40 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=29.0
Q ss_pred ccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhc
Q 016887 13 RFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQN 69 (381)
.++.++..++-.++.+ + + ...++|+.|++|. .-|..|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~--g-~----s~~~IA~~lgis~----------~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL--N-V----SLHEMSRKISRSR----------HCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT--T-C----CHHHHHHHHTCCH----------HHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc--C-C----CHHHHHHHHCcCH----------HHHHHHHhh
Confidence 4677877777666654 2 2 3678999999985 679998854
No 191
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=50.84 E-value=17 Score=37.00 Aligned_cols=50 Identities=6% Similarity=0.153 Sum_probs=40.9
Q ss_pred ccccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 11 AFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 11 RtrFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
+-.||++||++|.++|... ++.+++.++...+-+.|++.. ++.+|+.-|+
T Consensus 293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~--------TeeEI~~Lf~ 345 (440)
T 3u0k_A 293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP--------TEAELQDMIN 345 (440)
T ss_dssp CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCC--------CHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCC--------CHHHHHHHHH
Confidence 4579999999999999853 578999999888888888753 6778887664
No 192
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=50.80 E-value=15 Score=27.69 Aligned_cols=38 Identities=5% Similarity=-0.080 Sum_probs=30.1
Q ss_pred ccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCc
Q 016887 13 RFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESP 50 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~ 50 (381)
.+|++|+.+++++|... ++.+++.++...+-.+++++.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~ 42 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPI 42 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCH
Confidence 46899999999999753 467888888888878888764
No 193
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=50.04 E-value=16 Score=26.03 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=32.2
Q ss_pred cccCHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 12 FRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e---~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
..+|++++.+|.++|.. .++.+++..+...+-..++ . ++..+|+.+|+
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g-~--------~~~~~~~~~~~ 53 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG-S--------VTPDEVRRMMA 53 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT-T--------CCHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC-C--------CCHHHHHHHHH
Confidence 35799999999999975 3456888887777777665 2 34555665554
No 194
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=50.00 E-value=5.4 Score=30.09 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=26.9
Q ss_pred hhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 158 VSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 158 V~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
|.-.|.+|. ..|..++.|+..||+.+++.|-+..
T Consensus 3 VE~Il~~r~-~~g~~~YlVKWkGy~~~~~TWEp~~ 36 (64)
T 3mts_A 3 VEYLCDYKK-IREQEYYLVKWRGYPDSESTWEPRQ 36 (64)
T ss_dssp EEEEEEEEE-CSSCEEEEEEETTSCGGGCEEEEGG
T ss_pred ceEEEEEEE-eCCeEEEEEEEecCCCcCCcEeEHH
Confidence 444566664 4688999999999999999997754
No 195
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=49.04 E-value=42 Score=32.46 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=62.0
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc------------------------------
Q 016887 143 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK------------------------------ 192 (381)
Q Consensus 143 lEFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk------------------------------ 192 (381)
|-+|+...++-.=|=|++...- + | .-|+|||.|+++.+|-|+++.
T Consensus 46 mklE~~D~~~~~~~~vAtV~~v--~--G-~rl~l~~dg~~~~~dFW~~~~S~~IhPvGwc~~~g~~L~pP~~~~~~~f~W 120 (331)
T 1oz2_A 46 MKLEGIDPQHPSMYFILTVAEV--C--G-YRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSW 120 (331)
T ss_dssp CEEEEEETTEEEEEEEEEEEEE--E--T-TEEEEEETTSCGGGCEEEETTCTTEECTTHHHHHTCCEECCTTCCGGGCCH
T ss_pred CEEEEEeCCCCCcEEEEEEEEe--c--C-CEEEEEECCCCCCCCEEEcCCCCCcccCchHHhcCCcccCccccccccCcH
Confidence 5566665555443334443331 1 2 359999999999999998851
Q ss_pred --------------ccccccCCcccccccccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCC
Q 016887 193 --------------RHVRQRSLPCEASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQ 258 (381)
Q Consensus 193 --------------~rvR~rS~plE~sEC~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp 258 (381)
..|+.++.+ ...+.+++|..+-+..-.+ ..+++=|.|.+|... +|+|+||--.
T Consensus 121 ~~yL~~t~a~~aP~~lF~~~~~~---~~~~~F~vGmKLEavD~~n-p~~icvATV~~v~g~---------r~~v~~Dg~~ 187 (331)
T 1oz2_A 121 SQYLRSTRAQAAPKHLFVSQSHS---PPPLGFQVGMKLEAVDRMN-PSLVCVASVTDVVDS---------RFLVHFDNWD 187 (331)
T ss_dssp HHHHHHHTCCBCCGGGCSCSSCS---CCCTTCCTTCEEEEECTTS-TTCEEEEEEEEEETT---------EEEEEETTSC
T ss_pred HHHHHhcCCCCCChHHhcccCCC---CCccccccccEEEeccCCC-CCcEEEEEEEEeeCC---------EEEEEeCCCC
Confidence 113322111 1246688998888775444 468999999988632 6889987544
Q ss_pred c
Q 016887 259 S 259 (381)
Q Consensus 259 ~ 259 (381)
.
T Consensus 188 ~ 188 (331)
T 1oz2_A 188 D 188 (331)
T ss_dssp G
T ss_pred C
Confidence 3
No 196
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=47.99 E-value=23 Score=26.82 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=30.2
Q ss_pred cccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCc
Q 016887 12 FRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESP 50 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~ 50 (381)
..||++|+.+|.++|... ++.+++..+...+-..+++..
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~ 44 (147)
T 4ds7_A 3 QNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSP 44 (147)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCC
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCC
Confidence 468999999999999763 456888888888878777643
No 197
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=47.92 E-value=5.2 Score=31.00 Aligned_cols=48 Identities=10% Similarity=0.145 Sum_probs=27.8
Q ss_pred ccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 13 RFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
.||++|+.+|.++|... ++.+++..+...+-..++... +..+++.+|+
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~--------~~~~~~~l~~ 53 (151)
T 1w7j_B 3 EFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNP--------TNAEVLKVLG 53 (151)
T ss_dssp --------CHHHHHHHHCCSSSSEEESTTHHHHHHHTTCCC--------CHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCC--------CHHHHHHHHH
Confidence 58999999999999763 456788877777777777653 4556666663
No 198
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=47.88 E-value=11 Score=29.65 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=30.2
Q ss_pred ccCHHHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHhCCCc
Q 016887 13 RFNPAEVTEMEGILQEH-----HNAMPSREILVALAEKFSESP 50 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~-----~n~Yp~r~~rq~LA~kfnlS~ 50 (381)
.||++|+.+|.++|... ++.+++..+...+-..++...
T Consensus 2 ~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~lg~~~ 44 (159)
T 2ovk_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSEEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHcCCCC
Confidence 58999999999999764 467788888887778887653
No 199
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=47.42 E-value=33 Score=30.52 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=38.3
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcceeecc
Q 016887 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRP 272 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC~rp 272 (381)
.+++|+++++... +..||-|.|++|... -.+.|+|..-.+.+.|++.+|+..|
T Consensus 65 ~~~~G~~c~a~~~---d~~wyRa~V~~~~~~--------~~~~V~~vDyGn~~~v~~~~lr~l~ 117 (246)
T 2hqx_A 65 APRRGEFCIAKFV---DGEWYRARVEKVESP--------AKIHVFYIDYGNREVLPSTRLGTLS 117 (246)
T ss_dssp CCCTTCEEEEECT---TSCEEEEEEEEEEET--------TEEEEEETTTCCEEEECGGGEECCC
T ss_pred CCCCCCEEEEEcC---CCCEEEEEEEEEcCC--------CeEEEEEEeCCCeEEEeHHHhhcCC
Confidence 4678997665332 457999999999642 2678888776777778887776654
No 200
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=46.44 E-value=45 Score=26.72 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=36.5
Q ss_pred CCCCCCCC--------CCccccCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhC
Q 016887 1 MGRPPSNG--------GPAFRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFS 47 (381)
Q Consensus 1 mGrPps~~--------~pRtrFT~~QI~eLEk~F~e~-~n~Yp~r~~rq~LA~kfn 47 (381)
||...+.= ...+.||.+||.+|-+.|... ++.+++..+...+-..++
T Consensus 1 MG~~~~~l~~~~l~~l~~~~~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~ 56 (190)
T 1fpw_A 1 MGAKTSKLSKDDLTCLKQSTYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFF 56 (190)
T ss_dssp CCCCSCCSTTHHHHHHTTTCCSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHC
T ss_pred CCcccCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHc
Confidence 77766531 233679999999999999876 688999988888887774
No 201
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=45.07 E-value=41 Score=25.72 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=23.8
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeeccc
Q 016887 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRH 241 (381)
Q Consensus 208 ~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~H 241 (381)
.++.+|+-||+-.. +-+||-+.|.+|...++
T Consensus 2 ~~f~~GedVLarws---DG~fYlGtI~~V~~~~~ 32 (58)
T 4hcz_A 2 PRLWEGQDVLARWT---DGLLYLGTIKKVDSARE 32 (58)
T ss_dssp CSCCTTCEEEEECT---TSCEEEEEEEEEETTTT
T ss_pred CccccCCEEEEEec---CCCEEeEEEEEEecCCC
Confidence 46789999996432 46899999999976654
No 202
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.62 E-value=26 Score=27.61 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=28.2
Q ss_pred cccccccccCCceEEEeeecCCcceEeeEEEeeeeeccc
Q 016887 203 EASECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRH 241 (381)
Q Consensus 203 E~sEC~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~H 241 (381)
-.+-|.++.+|+.|||-.. |-+||-+.|..|...++
T Consensus 3 ~g~~~~~f~eGqdVLarWs---DGlfYlGtV~kV~~~~~ 38 (68)
T 2e5p_A 3 SGSSGPRLWEGQDVLARWT---DGLLYLGTIKKVDSARE 38 (68)
T ss_dssp CCCCCCCCCTTCEEEEECT---TSSEEEEEEEEEETTTT
T ss_pred CCCCCcccccCCEEEEEec---CCcEEEeEEEEEecCCc
Confidence 3567899999999997432 46899999999986544
No 203
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=44.51 E-value=54 Score=25.68 Aligned_cols=50 Identities=16% Similarity=0.343 Sum_probs=37.5
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcce
Q 016887 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKV 268 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kv 268 (381)
+...||.|++== +-+.+||-|+|.+|....+ ..+|.|.. .+++.++..+|
T Consensus 9 ~~~vgd~VmaRW--~Gd~~yYparI~Si~s~~~-------~Y~V~fKd-gT~e~L~~kDI 58 (66)
T 2l8d_A 9 KYADGEVVMGRW--PGSVLYYEVQVTSYDDASH-------LYTVKYKD-GTELALKESDI 58 (66)
T ss_dssp SSCSSCEEEEEC--TTSSCEEEEEEEEEETTTT-------EEEEEETT-SCEEEEEGGGE
T ss_pred EeecCCEEEEEc--CCCccceEEEEEEeccCCc-------eEEEEecC-CCEEeechhcc
Confidence 456899999855 4479999999999995444 58899988 66666655444
No 204
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=44.37 E-value=18 Score=28.11 Aligned_cols=38 Identities=5% Similarity=0.116 Sum_probs=28.8
Q ss_pred cccCHHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHHhCCC
Q 016887 12 FRFNPAEVTEMEGILQE-----HHNAMPSREILVALAEKFSES 49 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e-----~~n~Yp~r~~rq~LA~kfnlS 49 (381)
+.||++|+.+|.++|.. .++.+++..+...+-..++..
T Consensus 1 ~~ls~~~~~~l~~~F~~~D~~~d~~G~i~~~el~~~l~~~g~~ 43 (156)
T 1wdc_C 1 PKLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGIN 43 (156)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTCSSSCEEGGGHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHccCCCCCCCCcHHHHHHHHHHcCCC
Confidence 35899999999999975 456788887777777777764
No 205
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=44.33 E-value=61 Score=28.19 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=38.1
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcceeeccc
Q 016887 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPE 273 (381)
Q Consensus 208 ~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC~rp~ 273 (381)
..+++|+.+|+. .. ++..||=|.|+++.... .+.|+|-.=.+.+.|++.+|+..|.
T Consensus 64 ~~~~~G~~c~a~-~~-~d~~wyRa~V~~~~~~~--------~~~V~~vDyG~~~~v~~~~l~~l~~ 119 (201)
T 4b9w_A 64 FKAEIGRPCCAF-FS-GDGNWYRALVKEILPSG--------NVKVHFVDYGNVEEVTTDQLQAILP 119 (201)
T ss_dssp CCCCTTCEEEEE-ET-TTTEEEEEEEEEECTTS--------CEEEEETTTCCEEEECGGGEEECCG
T ss_pred CCCCCCCEEEEE-EC-CCCeEEEEEEEEECCCC--------eEEEEEEccCCEEEEEHHHhccChH
Confidence 356789876653 32 25589999999986422 2567776666667888888876653
No 206
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=43.87 E-value=21 Score=27.21 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCC
Q 016887 15 NPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (381)
Q Consensus 15 T~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS 49 (381)
|++|+.+|+++|... ++.+++..+...+-..++..
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 38 (142)
T 2bl0_C 1 GDDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVR 38 (142)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC
Confidence 457888888888763 45677777777776667654
No 207
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=43.33 E-value=7.1 Score=29.80 Aligned_cols=39 Identities=8% Similarity=0.258 Sum_probs=33.5
Q ss_pred CceeehhhhhhccccCCCCCeEEEEecCCCCCccccccc
Q 016887 153 GAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNI 191 (381)
Q Consensus 153 gAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnv 191 (381)
-.||-|.-.|.+|.-..|..+..|+..|+..++.-|=+.
T Consensus 9 pe~~~VeRIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~ 47 (64)
T 2ee1_A 9 PEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQASWESE 47 (64)
T ss_dssp CSSCCCCCCCEEEECTTCCEEEEECCTTSCTTTCEEEET
T ss_pred CCcEEEEEEEEEEecCCCCEEEEEEEcCCCcccCcccCC
Confidence 468889889999876788899999999999999988543
No 208
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=43.10 E-value=30 Score=27.04 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=28.6
Q ss_pred ccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCC
Q 016887 13 RFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS 49 (381)
.|+++++.+|+++|... ++.+++..+...+-..++..
T Consensus 20 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~ 59 (166)
T 2aao_A 20 SLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGAN 59 (166)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCC
T ss_pred hCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCC
Confidence 58999999999999753 46788888777777777654
No 209
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=42.38 E-value=10 Score=26.02 Aligned_cols=29 Identities=34% Similarity=0.407 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhC
Q 016887 18 EVTEMEGILQEHHNAMPSREILVALAEKFS 47 (381)
Q Consensus 18 QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfn 47 (381)
|+++||+.|++. =+-|-+-+.++|-.+|.
T Consensus 2 eveelekkfkel-wkgprrgeieelhkkfh 30 (35)
T 1qp6_A 2 EVEELEKKFKEL-WKGPRRGEIEELHKKFH 30 (35)
T ss_dssp CSHHHHHHHHHH-HSSSCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hcCCccchHHHHHHHHH
Confidence 578999999997 46788899999998884
No 210
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=42.33 E-value=28 Score=28.88 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=39.0
Q ss_pred cccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhc
Q 016887 12 FRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQN 69 (381)
..||..|+.+|.++|... ++.+++..+...+-..++.. ++..+|...|+.
T Consensus 49 ~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~--------~~~~~~~~l~~~ 101 (196)
T 3dtp_E 49 AMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRL--------CTEQELDSMVAE 101 (196)
T ss_dssp CSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCC--------CCHHHHHHHHTT
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCC--------CCHHHHHHHHHH
Confidence 469999999999999864 46789999988888888765 356667765543
No 211
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=41.88 E-value=18 Score=28.04 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=27.7
Q ss_pred cccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCC
Q 016887 12 FRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS 49 (381)
..||++|+.+|+++|... ++.+++..+...+-..+++.
T Consensus 12 ~~ls~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 52 (162)
T 1top_A 12 AFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQN 52 (162)
T ss_dssp HHSCHHHHHHHHHHHHTTTCSCSSEEEGGGHHHHHHHTTCC
T ss_pred hhcCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCC
Confidence 468999999999999764 34567776666666666653
No 212
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=41.80 E-value=53 Score=25.41 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=34.0
Q ss_pred CccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhh
Q 016887 10 PAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWF 67 (381)
Q Consensus 10 pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WF 67 (381)
.+-.||++|-+.|-+++.+.+++ =..||+.||.| ..||++-|
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~k------W~~IA~~lgRt----------~~q~knRw 63 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGND------WATIGAALGRS----------ASSVKDRC 63 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSC------HHHHHHHHTSC----------HHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC------HHHHHHHhCCC----------HHHHHHHH
Confidence 45579999999999999997654 57889999776 49999644
No 213
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=40.57 E-value=38 Score=27.06 Aligned_cols=37 Identities=11% Similarity=0.150 Sum_probs=30.9
Q ss_pred cccCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCC
Q 016887 12 FRFNPAEVTEMEGILQE-HHNAMPSREILVALAEKFSE 48 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e-~~n~Yp~r~~rq~LA~kfnl 48 (381)
+.||.+||.+|-+.|.. .++.+++..+...+-..++.
T Consensus 13 ~~~s~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~ 50 (183)
T 1s6c_A 13 TNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFP 50 (183)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHST
T ss_pred cCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcC
Confidence 56899999999999998 46788999888887777764
No 214
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=40.40 E-value=29 Score=27.53 Aligned_cols=38 Identities=5% Similarity=0.128 Sum_probs=28.0
Q ss_pred cccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCC
Q 016887 12 FRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS 49 (381)
..||++|+.+|+++|... ++.+++..+...+-..++..
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~ 43 (179)
T 2f2o_A 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 43 (179)
T ss_dssp ---CCSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCC
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC
Confidence 358889999999999764 45688888888887777764
No 215
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=38.65 E-value=41 Score=25.91 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=33.5
Q ss_pred cccCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHhCCCccccCCcccccchhHhhhhc
Q 016887 12 FRFNPAEVTEMEGILQEHHNAMPSR-EILVALAEKFSESPERKGKIMVQMKQVWNWFQN 69 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e~~n~Yp~r-~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQN 69 (381)
..||.++..++=+.+.+.+..|.+. ....++|..||+++ .+|..|.+.
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~----------~tl~~W~~~ 53 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP----------ETLRVWVRQ 53 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCH----------HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCH----------HHHHHHHHH
Confidence 4689988876666554422124442 56889999999985 889999653
No 216
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=38.62 E-value=26 Score=28.88 Aligned_cols=48 Identities=15% Similarity=0.023 Sum_probs=32.7
Q ss_pred CCCCCCC-----CCCccccCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhCC
Q 016887 1 MGRPPSN-----GGPAFRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFSE 48 (381)
Q Consensus 1 mGrPps~-----~~pRtrFT~~QI~eLEk~F~e~-~n~Yp~r~~rq~LA~kfnl 48 (381)
||...+. =...+.|+.+||.++=+.|... ++.+++..+...+-..++.
T Consensus 1 MG~~~s~~~~~~l~~~t~~~~~el~~~f~~~D~~~~~G~i~~~e~~~~l~~~~~ 54 (204)
T 1jba_A 1 MGQQFSWEEAEENGAVGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDN 54 (204)
T ss_dssp -CCCSSCHHHHHSSSCCHHHHHHHHHHHHHHHSSSTTCCEEHHHHHHHHHCCSS
T ss_pred CCcccccccHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHhcC
Confidence 7777663 2345567777777766666665 5789999888887777664
No 217
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=37.63 E-value=65 Score=28.64 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=32.6
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCccee
Q 016887 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVC 269 (381)
Q Consensus 208 ~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC 269 (381)
..+.+|+++|+. .. ++..||=|.|+++.... .+.|+|..=.+.+.|++.+|+
T Consensus 64 ~~~~~G~~c~a~-~~-~d~~WyRa~V~~~~~~~--------~~~V~~vDyGn~~~v~~~~l~ 115 (226)
T 4b9x_A 64 FKAEIGRPCCAF-FS-GDGNWYRALVKEILPSG--------NVKVHFVDYGNVEEVTTDQLQ 115 (226)
T ss_dssp CCCCTTCEEEEE-ET-TTTEEEEEEEEEECSSS--------EEEEECTTTCCEEEEEGGGEE
T ss_pred CCCCCCCEEEEE-EC-CCCeEEEEEEEEECCCC--------eEEEEEEecCCEEEEEHHHhc
Confidence 456789976653 22 25589999999986421 256666554555556555554
No 218
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=36.71 E-value=68 Score=25.24 Aligned_cols=51 Identities=14% Similarity=0.300 Sum_probs=38.5
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCccee
Q 016887 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVC 269 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC 269 (381)
+...||.|++==- -+.+||-|+|.+|....+ ..+|.|.. .+++.++..+|=
T Consensus 12 ~f~vgd~VmaRW~--Gd~~yYparItSits~~~-------~Y~VkfKd-gT~e~L~~kDIK 62 (68)
T 2dig_A 12 KFADGEVVRGRWP--GSSLYYEVEILSHDSTSQ-------LYTVKYKD-GTELELKENDIK 62 (68)
T ss_dssp SSCSSCEEEEECT--TTCCEEEEEEEEEETTTT-------EEEEECTT-SCEEEEETTTEE
T ss_pred EeecCCEEEEEcc--CCccceEEEEEEeccCCc-------eEEEEecC-CCEEEechhccc
Confidence 4568999997544 368999999999994444 58899988 667777666653
No 219
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=35.23 E-value=20 Score=31.27 Aligned_cols=21 Identities=24% Similarity=0.552 Sum_probs=18.9
Q ss_pred CeEEEEecCCCCCcccccccc
Q 016887 172 PEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 172 ~elrVrf~gFg~eeDEwvnvk 192 (381)
++++|+|.|+..--||||...
T Consensus 75 ~~Y~VHY~GWn~~WDEWV~e~ 95 (130)
T 3e9g_A 75 KCFFIHYQGWKSSWDEWVGYD 95 (130)
T ss_dssp CEEEEEETTSCGGGCEEEETT
T ss_pred ceEEEEeCCCCCChhhccCHh
Confidence 679999999999999999753
No 220
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.21 E-value=24 Score=27.49 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=21.9
Q ss_pred EeeccCCCceeehhhhhhccccCCCCCeEEEEecCC
Q 016887 146 EAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGF 181 (381)
Q Consensus 146 EA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gF 181 (381)
.|+-+ ||.||...+.-- +++..+.|.|.+|
T Consensus 17 lA~ws-Dg~~Y~A~I~~v-----~~~~~~~V~f~Dy 46 (74)
T 2equ_A 17 LARWT-DCRYYPAKIEAI-----NKEGTFTVQFYDG 46 (74)
T ss_dssp EEECS-SSSEEEEEEEEE-----STTSSEEEEETTS
T ss_pred EEECC-CCCEEEEEEEEE-----CCCCEEEEEEecC
Confidence 45555 999999887632 1235799999988
No 221
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=35.21 E-value=39 Score=28.92 Aligned_cols=48 Identities=2% Similarity=-0.088 Sum_probs=33.6
Q ss_pred ccCHHHHHHHHHHHHHh---cCCCCCHHHHHH-HHHHhCCCccccCCcccccchhHhhhh
Q 016887 13 RFNPAEVTEMEGILQEH---HNAMPSREILVA-LAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~-LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
.||++|+.+|+++|... ++.+++..+... |.+.+++.. +..+++..|+
T Consensus 44 ~ls~~~~~~l~~~F~~~D~d~dG~Is~~El~~~l~~~lg~~~--------~~~~~~~~~~ 95 (226)
T 2lvv_A 44 DKDAESKSRRIELFKQFDTNGTGKLGFREVLDGCYGILKLDE--------FTTHLPDIVQ 95 (226)
T ss_dssp SCCHHHHHHHHHHHHHHGGGSCSCBCSHHHHHHHHHTTCCTT--------TSSSCHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 47899999999988653 467888877776 777777653 4455555553
No 222
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=35.10 E-value=45 Score=28.00 Aligned_cols=63 Identities=3% Similarity=-0.040 Sum_probs=41.5
Q ss_pred CccccCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhCCCc------------cccCCcccccchhHhhhhcchh
Q 016887 10 PAFRFNPAEVTEMEGILQEH--HNAMPSREILVALAEKFSESP------------ERKGKIMVQMKQVWNWFQNRRY 72 (381)
Q Consensus 10 pRtrFT~~QI~eLEk~F~e~--~n~Yp~r~~rq~LA~kfnlS~------------~RaGk~~Vq~kQVk~WFQNRR~ 72 (381)
..-..|++|.++++++|... ++.|++.++...+=.+.+|+. ++.|++...|=-+--|+-+++.
T Consensus 23 ~~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~~~~ 99 (121)
T 3fia_A 23 DTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKLKL 99 (121)
T ss_dssp TTSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHHHH
Confidence 44568999999999999864 457788877776666677754 3344444444334455555543
No 223
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=34.85 E-value=25 Score=33.32 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=35.8
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 143 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 143 lEFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
|-+||...++-..+=|++..+-. +..|+|+|.|..++.|.|++..
T Consensus 148 MKLEavD~~np~~icvATV~~v~-----g~rl~v~fDGw~~~~D~W~~~~ 192 (265)
T 2r58_A 148 QKLEAVDKKNPQLICCATVDAIK-----DDQIHVTFDGWRGAFDYWCNYR 192 (265)
T ss_dssp CEEEEECTTSTTCEEEEEEEEEE-----TTEEEEEETTSCGGGCEEEETT
T ss_pred cEEEeccCCCCCCEEEEEEEEec-----CCEEEEEeCCCCCcCCEEEECC
Confidence 78888888888777777665431 3669999999999999999863
No 224
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=34.31 E-value=58 Score=30.38 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=52.4
Q ss_pred cCCceEEEeeecCCcceEeeEEEeeeeecccC--CCCcceEEEEEeecCCccccccCcceeecccccHHHHH-HHhcccc
Q 016887 211 LPGDLILCFQEGKDQALYFDAHVLDAQRRRHD--VRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQQ-LHAMNDS 287 (381)
Q Consensus 211 ~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd--~~gCrC~FlVrw~hdp~ee~v~l~kvC~rp~~Dp~l~~-~~~~~~~ 287 (381)
+.|++|-|-..+ .-.||-|+|+.|.++.-. ..+=.+.|-|.|+..|..+.+.+.-.-.||.-...++. .|.+...
T Consensus 4 ki~~~vd~~d~~--~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~irprar~~~~~~~l~~g~~ 81 (226)
T 3ask_A 4 KVNEYVDARDTN--MGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQDLEVGQV 81 (226)
T ss_dssp CTTCEEEEECTT--TCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEEECCCCBCCGGGCCTTCE
T ss_pred ccCceEEeeecC--CCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccccccccccccCCccccccCcE
Confidence 679999886543 468999999999995422 10112899999999999988877777777766554433 3444433
Q ss_pred cc
Q 016887 288 VM 289 (381)
Q Consensus 288 ~~ 289 (381)
.+
T Consensus 82 vm 83 (226)
T 3ask_A 82 VM 83 (226)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 225
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=33.99 E-value=51 Score=23.66 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=23.7
Q ss_pred cCHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCC
Q 016887 14 FNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSE 48 (381)
Q Consensus 14 FT~~QI~eLEk~F~e---~~n~Yp~r~~rq~LA~kfnl 48 (381)
.+.+++.+|.++|.. .++.+++..+...+-..++.
T Consensus 3 ~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~ 40 (92)
T 2kn2_A 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGE 40 (92)
T ss_dssp CCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCC
Confidence 345667777777764 34567888777777777764
No 226
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=33.67 E-value=63 Score=25.96 Aligned_cols=34 Identities=6% Similarity=0.145 Sum_probs=28.7
Q ss_pred ccCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHh
Q 016887 13 RFNPAEVTEMEGILQEH----HNAMPSREILVALAEKF 46 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~----~n~Yp~r~~rq~LA~kf 46 (381)
.+|+.++.+|+++|... ++.+++..+...+..++
T Consensus 5 ~ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~ 42 (191)
T 2ccm_A 5 QLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKI 42 (191)
T ss_dssp CCCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHH
T ss_pred hccHHHHHHHHHhccccccCCCCCeeeHHHHHHHHHHH
Confidence 47899999999999776 56789998888888877
No 227
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=33.49 E-value=53 Score=25.62 Aligned_cols=32 Identities=9% Similarity=0.115 Sum_probs=25.5
Q ss_pred cccccccCCceEEEeeecCCcceEeeEEEeeeeec
Q 016887 205 SECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRR 239 (381)
Q Consensus 205 sEC~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr 239 (381)
.+..+..+||.||+-- .|-+||-|.|..|...
T Consensus 9 ~~~~~f~vGddVLA~w---tDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 9 KPACKFEEGQDVLARW---SDGLFYLGTIKKINIL 40 (66)
T ss_dssp CCCCCSCTTCEEEEEC---TTSCEEEEEEEEEETT
T ss_pred cccccccCCCEEEEEE---ccCcEEEeEEEEEccC
Confidence 3556899999999643 3678999999999764
No 228
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=32.66 E-value=50 Score=25.89 Aligned_cols=39 Identities=5% Similarity=0.021 Sum_probs=28.1
Q ss_pred ccccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCC
Q 016887 11 AFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (381)
Q Consensus 11 RtrFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS 49 (381)
-..+|.+|+.+|.++|... ++.+++.++...+-...+++
T Consensus 5 ~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~ 46 (111)
T 2kgr_A 5 EWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLP 46 (111)
T ss_dssp CSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCC
Confidence 4558999999999999753 45678887766665555544
No 229
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=32.10 E-value=14 Score=29.50 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=31.5
Q ss_pred CCCccccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCC
Q 016887 8 GGPAFRFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (381)
Q Consensus 8 ~~pRtrFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS 49 (381)
......+|.+|+.++.++|... ++.+++.++...+-.+++++
T Consensus 10 ~~~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~ 54 (110)
T 1iq3_A 10 PDEPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLS 54 (110)
T ss_dssp CCSSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCS
T ss_pred CCCCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCC
Confidence 4455678999999999999864 35788888777766666654
No 230
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=31.81 E-value=66 Score=24.30 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=30.1
Q ss_pred ccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 11 AFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 11 RtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
|..||.++..+.=+.+... . .....++|+.||+|. ..|..|.+
T Consensus 3 r~~ys~e~k~~~v~~~~~~-~----g~s~~~ia~~~gIs~----------~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENS-D----GASLQQIANDLGINR----------VTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTG-G----GSCHHHHHHHHTSCH----------HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc-C----CChHHHHHHHHCcCH----------HHHHHHHH
Confidence 3578988877665555431 0 123679999999985 88999975
No 231
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=31.79 E-value=49 Score=22.38 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=28.3
Q ss_pred ccC--HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 13 RFN--PAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 13 rFT--~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
-++ +++..++-.++.+ .+ ...+||+.||+|. .-|..|++
T Consensus 13 ~l~~~~~~~~~i~~l~~~---g~----s~~eIA~~lgis~----------~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKM---GY----TVQQIANALGVSE----------RKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHT---TC----CHHHHHHHHTSCH----------HHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHc---CC----CHHHHHHHHCcCH----------HHHHHHHH
Confidence 567 7777777776644 22 3678999999985 66888874
No 232
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=31.57 E-value=78 Score=22.78 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchh
Q 016887 14 FNPAEVTEMEGILQEHH----NAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72 (381)
Q Consensus 14 FT~~QI~eLEk~F~e~~----n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~ 72 (381)
+|++|+..++++-.... ..-+ ...+||+.+|+|. ..|..|..+++.
T Consensus 2 lt~~~~~~~~~l~~~l~~~r~~~gl---tq~~lA~~~gvs~----------~~is~~e~g~~~ 51 (80)
T 3kz3_A 2 LTQEQLEDARRLKAIWEKKKNELGL---SYESVADKMGMGQ----------SAVAALFNGINA 51 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHTTSCH----------HHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCC---CHHHHHHHhCcCH----------HHHHHHHcCCCC
Confidence 56677766554433210 0112 2467899998874 778899888753
No 233
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=31.10 E-value=72 Score=25.52 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=30.2
Q ss_pred cccc-CHHHHHHHHHHHHH---hcCCCCCHHHHH-----HHHHHhCCCc
Q 016887 11 AFRF-NPAEVTEMEGILQE---HHNAMPSREILV-----ALAEKFSESP 50 (381)
Q Consensus 11 RtrF-T~~QI~eLEk~F~e---~~n~Yp~r~~rq-----~LA~kfnlS~ 50 (381)
.+.| |++|+.+|+++|.. .++.+++..+.. .+-+.++...
T Consensus 10 ~~~~~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~ 58 (195)
T 1qv0_A 10 KTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATP 58 (195)
T ss_dssp SCCTTCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCH
T ss_pred CcccCCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCc
Confidence 4455 99999999999975 356789998877 5566677653
No 234
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=30.51 E-value=30 Score=32.16 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=36.7
Q ss_pred ceeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 142 FMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 142 ~lEFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
-|-+||.-.++-.++-|++..+-. +..|+|+|.|..++.|.|+...
T Consensus 175 GmKLEavD~~~p~~icvATV~~v~-----g~rl~v~fDgw~~~~D~W~~~d 220 (243)
T 2biv_A 175 GMKLEAIDKKNPYLICPATIGDVK-----GDEVHITFDGWSGAFDYWCKYD 220 (243)
T ss_dssp TCEEEEECTTSTTCEEEEEEEEEE-----TTEEEEEETTSCGGGCEEEETT
T ss_pred CCEEEEEccCCCCeEEEEEEEEec-----CCEEEEEECCCCCcCCEEEeCC
Confidence 378899988888888777665421 3569999999999999999874
No 235
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=30.43 E-value=74 Score=29.64 Aligned_cols=95 Identities=14% Similarity=0.284 Sum_probs=58.6
Q ss_pred CCCceeehhhhhhccccCCCCCeEEEEecCCCCCccccccccccccccCCcccccccccccCCceEEEeeecCCcceEee
Q 016887 151 RDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQRSLPCEASECVAVLPGDLILCFQEGKDQALYFD 230 (381)
Q Consensus 151 ~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~rS~plE~sEC~~v~~Gd~VcCfqeg~d~alyyD 230 (381)
+++-||-..+.- =...+.| .+..|+|.+ ..+..+..+ ++=--..|. =..|-.|.||++...+..+-.||=
T Consensus 20 ~~~~W~rg~v~~-I~~~~~g-~~YkVkF~~---~g~~ivs~~-hiA~~~~p~----~~~l~vG~RVVA~~~~~~~~~fY~ 89 (213)
T 3dlm_A 20 RTKTWHKGTLIA-IQTVGPG-KKYKVKFDN---KGKSLLSGN-HIAYDYHPP----ADKLYVGSRVVAKYKDGNQVWLYA 89 (213)
T ss_dssp TTSBEEEEEEEE-EEEETTE-EEEEEEESS---SCEEEECGG-GEEESSCCC----GGGCCTTCEEEEEEECSSCEEEEE
T ss_pred cCCcEEEEEEEE-EEECCCC-eEEEEEEcC---CCCEEeecc-eEEEecCCC----ccEEeEEEEEEEEecCCCCcceee
Confidence 478999876542 0000122 568899954 344555544 221111111 125889999998665555788998
Q ss_pred EEEeeeeecccCCCCcceEEEEEeecCCcc
Q 016887 231 AHVLDAQRRRHDVRGCRCRFLVRYDHDQSE 260 (381)
Q Consensus 231 A~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~e 260 (381)
.+|.+.-...+-- +|+|.||.|-..
T Consensus 90 GiVaE~p~~~N~~-----RyLVFFDDG~~~ 114 (213)
T 3dlm_A 90 GIVAETPNVKNKL-----RFLIFFDDGYAS 114 (213)
T ss_dssp EEEEECCCTTTTS-----CEEEEETTSCEE
T ss_pred eEEEECCccCCCc-----eEEEEEeCCCcc
Confidence 8888876644332 899999988765
No 236
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=29.87 E-value=30 Score=30.69 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHhCCCc
Q 016887 32 AMPSREILVALAEKFSESP 50 (381)
Q Consensus 32 ~Yp~r~~rq~LA~kfnlS~ 50 (381)
.|++.+..+.+|+.|++++
T Consensus 39 G~l~~~~~~~iA~~l~l~~ 57 (181)
T 3i9v_2 39 GWIRPERIEEIARLVGTTP 57 (181)
T ss_dssp SSCCHHHHHHHHHHHTSCH
T ss_pred CCCCHHHHHHHHHHhCcCH
Confidence 6999999999999999986
No 237
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=29.80 E-value=90 Score=29.54 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=40.0
Q ss_pred CCC-CCCCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcch
Q 016887 3 RPP-SNGGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (381)
Q Consensus 3 rPp-s~~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR 71 (381)
||| ...+...+||.+|...+++.|...++. -..||+.++-- |..||++-|+|-|
T Consensus 124 R~pe~~~k~s~~WTeEE~~lFleAl~kYGKD------W~~IAk~VgTK---------T~~QcKnfY~~~k 178 (235)
T 2iw5_B 124 RLPEVIQKCNARWTTEEQLLAVQAIRKYGRD------FQAISDVIGNK---------SVVQVKNFFVNYR 178 (235)
T ss_dssp CCCCCCCCCCSSCCHHHHHHHHHHHHHHSSC------HHHHHHHHSSC---------CHHHHHHHHHHTT
T ss_pred cCCCCCCccCCCCCHHHHHHHHHHHHHHCcC------HHHHHHHcCCC---------CHHHHHHHHHHHH
Confidence 344 346677899999999999999997543 67888887643 5789996665543
No 238
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=29.44 E-value=95 Score=22.69 Aligned_cols=55 Identities=11% Similarity=0.073 Sum_probs=29.9
Q ss_pred CCCCCCCCCCccccCHHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcch
Q 016887 1 MGRPPSNGGPAFRFNPAEV-TEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (381)
Q Consensus 1 mGrPps~~~pRtrFT~~QI-~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR 71 (381)
||.+|-.-..........+ ..|.++.++ .=++ .++||+.+|+|. ..|..|..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~~---~gls---q~elA~~~gis~----------~~is~~e~g~~ 56 (83)
T 2a6c_A 1 MGSDKIHHHHHHMKMRSQLLIVLQEHLRN---SGLT---QFKAAELLGVTQ----------PRVSDLMRGKI 56 (83)
T ss_dssp -----CCCCCSSHHHHHHHHHHHHHHHHT---TTCC---HHHHHHHHTSCH----------HHHHHHHTTCG
T ss_pred CcccccccCcCCccccHHHHHHHHHHHHH---cCCC---HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 5666644333333333333 344444444 2233 578999999985 77999999886
No 239
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=29.25 E-value=26 Score=25.54 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=29.3
Q ss_pred ccccCHHHHHHHHH---HHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcch
Q 016887 11 AFRFNPAEVTEMEG---ILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (381)
Q Consensus 11 RtrFT~~QI~eLEk---~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR 71 (381)
+..+++++...++. .+...-... ..++||+.+|+|. ..|..|..+++
T Consensus 3 ~~~~~~~~~~~~~~~g~~l~~~R~~~----sq~~lA~~~gis~----------~~is~~E~g~~ 52 (86)
T 2ofy_A 3 RVPLTAEELERGQRLGELLRSARGDM----SMVTVAFDAGISV----------ETLRKIETGRI 52 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTS----CHHHHHHHHTCCH----------HHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHhCCCH----------HHHHHHHcCCC
Confidence 34466766654432 232221222 4569999999985 67889988875
No 240
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=29.15 E-value=61 Score=25.90 Aligned_cols=36 Identities=11% Similarity=0.059 Sum_probs=29.0
Q ss_pred ccccCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHh
Q 016887 11 AFRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKF 46 (381)
Q Consensus 11 RtrFT~~QI~eLEk~F~e~-~n~Yp~r~~rq~LA~kf 46 (381)
.+.|+..||.++=+.|... ++.+++..+...+-..+
T Consensus 19 ~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~ 55 (190)
T 1g8i_A 19 KTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQF 55 (190)
T ss_dssp TSSSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHh
Confidence 4578899999998899876 67889988877777776
No 241
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=28.89 E-value=68 Score=26.70 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=32.6
Q ss_pred ccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 13 RFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
.++.+|+.+|.++|... ++.+++..+...+-..++.. +++.+|+..|+
T Consensus 50 ~l~~~e~~~l~~~F~~~D~d~~G~Is~~El~~~l~~~g~~--------~~~~~~~~l~~ 100 (197)
T 3pm8_A 50 HLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQ--------KIPPDIHQVLR 100 (197)
T ss_dssp HCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHC------------CHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCC--------CCHHHHHHHHH
Confidence 47889999999999763 45688888877777777653 34556665554
No 242
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=28.61 E-value=37 Score=26.39 Aligned_cols=35 Identities=6% Similarity=-0.016 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCC
Q 016887 15 NPAEVTEMEGILQE---HHNAMPSREILVALAEKFSES 49 (381)
Q Consensus 15 T~~QI~eLEk~F~e---~~n~Yp~r~~rq~LA~kfnlS 49 (381)
|++|+.+|+++|.. .++.+++..+...+-+.++..
T Consensus 1 ~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 38 (143)
T 2obh_A 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFE 38 (143)
T ss_dssp CHHHHHHHHHHHHTTCTTCCSEEEGGGHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 46778888888764 234566666666666666653
No 243
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=28.49 E-value=68 Score=25.37 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=30.5
Q ss_pred cccCHHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhCCCc
Q 016887 12 FRFNPAEVTEMEGILQEH--HNAMPSREILVALAEKFSESP 50 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e~--~n~Yp~r~~rq~LA~kfnlS~ 50 (381)
..+|++|++++.++|... ++.+++.++...+-.+++++.
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~ 47 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPV 47 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCH
Confidence 357899999999999753 567888888777777777664
No 244
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=28.46 E-value=1.5e+02 Score=21.91 Aligned_cols=49 Identities=10% Similarity=0.039 Sum_probs=36.8
Q ss_pred CccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhh
Q 016887 10 PAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYA 73 (381)
Q Consensus 10 pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K 73 (381)
.+-.||.+|-..|.++++..++ .=..||..|.-= |..||++-|++-..+
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~------~W~~Ia~~~~~R---------t~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR------RWTKISKLIGSR---------TVLQVKSYARQYFKN 56 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS------CHHHHHHHHSSS---------CHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCc------CHHHHHHHcCCC---------CHHHHHHHHHHHHHH
Confidence 4567999999999999999754 457788888421 468999877766433
No 245
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=28.21 E-value=36 Score=29.47 Aligned_cols=45 Identities=7% Similarity=0.176 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhh
Q 016887 15 NPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYA 73 (381)
Q Consensus 15 T~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K 73 (381)
.+++-...+++|+.. ....-..++|+.||.|. ..|..|..|..+.
T Consensus 158 ~~~~a~iv~~i~~~~----~~G~s~~~Ia~~l~is~----------~tv~r~l~~~~~~ 202 (209)
T 2r0q_C 158 DPQKRVIYHRVVEML----EEGQAISKIAKEVNITR----------QTVYRIKHDNGLS 202 (209)
T ss_dssp SHHHHHHHHHHHHHH----HTTCCHHHHHHHHTCCH----------HHHHHHHTTCC--
T ss_pred chHHHHHHHHHHHHH----HcCCCHHHHHHHHCcCH----------HHHHHHHhccccc
Confidence 455555566777653 22334778999999874 6688888877554
No 246
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=28.06 E-value=29 Score=32.31 Aligned_cols=99 Identities=13% Similarity=0.203 Sum_probs=62.3
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc--------------------cccc------
Q 016887 143 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK--------------------RHVR------ 196 (381)
Q Consensus 143 lEFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk--------------------~rvR------ 196 (381)
|-+||.-.++-.-|=|++.+.-. | ..|+|||.|+.+.+|.|+++. +.+|
T Consensus 67 mKLEa~D~~~~~~~~vATV~~v~----g-~~l~l~~dG~d~~~DfW~~~~S~~I~PvGwc~~~g~~L~pP~g~~~~~f~W 141 (243)
T 2biv_A 67 MKLEARDPRNATSVCIATVIGIT----G-ARLRLRLDGSDNRNDFWRLVDSPDIQPVGTCEKEGDLLQPPLGYQMNTSSW 141 (243)
T ss_dssp CEEEEEETTEEEEEEEEEEEEEE----T-TEEEEEETTSCSSSCEEEETTCTTEECTTHHHHTTCCCCCCTTCSSCGGGH
T ss_pred CEEEEecCCCCCcEEEEEEEEEe----C-CEEEEEECCCCCCCCEeecCCCCccccChhHHhcCCccCCCcccccccchH
Confidence 56777766665445555554421 2 579999999999999998752 1222
Q ss_pred ----------ccCCcccccc-------cccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeec
Q 016887 197 ----------QRSLPCEASE-------CVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDH 256 (381)
Q Consensus 197 ----------~rS~plE~sE-------C~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~h 256 (381)
....|.+-.. =+.+++|..|-+....+ ..++|=|.|.+|.-. ++.|+||.
T Consensus 142 ~~yL~~tl~ga~~aP~~lF~~~~~~~~~~~F~~GmKLEavD~~~-p~~icvATV~~v~g~---------rl~v~fDg 208 (243)
T 2biv_A 142 PMFLLKTLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKN-PYLICPATIGDVKGD---------EVHITFDG 208 (243)
T ss_dssp HHHHHHHHTTCCBCCGGGSCCCCCCCSSCCCCTTCEEEEECTTS-TTCEEEEEEEEEETT---------EEEEEETT
T ss_pred HHHHHHhccCCccCCHHHhccCCCCCccccccCCCEEEEEccCC-CCeEEEEEEEEecCC---------EEEEEECC
Confidence 1223322111 14677888877765544 568889999999632 46677754
No 247
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=26.98 E-value=45 Score=29.06 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.8
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeee
Q 016887 209 AVLPGDLILCFQEGKDQALYFDAHVLDA 236 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg~d~alyyDA~V~~V 236 (381)
...+|..|+||+.+. -|.|.|++|
T Consensus 7 ~f~~gE~VlcfHg~~----~YeAKIl~i 30 (130)
T 3e9g_A 7 EFALGGRCLAFHGPL----MYEAKILKI 30 (130)
T ss_dssp CCCTTCEEEEEETTE----EEEEEEEEE
T ss_pred cccCCCEEEEEeCCc----ceeeEEEEe
Confidence 567999999998743 799999999
No 248
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=26.72 E-value=31 Score=32.60 Aligned_cols=101 Identities=17% Similarity=0.177 Sum_probs=64.5
Q ss_pred eeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc--------------------ccc-------
Q 016887 143 MEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK--------------------RHV------- 195 (381)
Q Consensus 143 lEFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk--------------------~rv------- 195 (381)
|-+||...++-.-|=|++...-. | ..|+|||.|+.+.+|-|+++. +.+
T Consensus 39 MKLEavDp~~~~~icvATV~~v~----g-~~l~l~~DG~d~~~DfW~~~~S~~I~PvGwc~~~g~~L~pP~g~~~~~f~W 113 (265)
T 2r58_A 39 MKLEALDPRNVTSTCIATVVGVL----G-SRLRLRLDGSDSQNDFWRLVDSTEIHAIGHCEKNGGMLQPPLGFCMNASSW 113 (265)
T ss_dssp CEEEEEETTEEEEEEEEEEEEEE----T-TEEEEEETTSCSSCCEEEETTCTTEECTTHHHHTTCCCCCCTTCSSCGGGH
T ss_pred CEeEEecCCCCCCEEEEEEEEEe----C-CEEEEEeCCCCCcCCEeEeCCCCCeeccccHHhcCCcccCccccccCcCCH
Confidence 67788777676545555554421 2 369999999999999998852 111
Q ss_pred ---------cccCCcccc-------cccccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCC
Q 016887 196 ---------RQRSLPCEA-------SECVAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQ 258 (381)
Q Consensus 196 ---------R~rS~plE~-------sEC~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp 258 (381)
..+..|.+- ......++|-.+-+....+ ..++|=|.|.+|.. =+++|.||.-.
T Consensus 114 ~~yL~ktl~ga~~aP~~lF~~~~~~~~~~~F~vGMKLEavD~~n-p~~icvATV~~v~g---------~rl~v~fDGw~ 182 (265)
T 2r58_A 114 PGYLCKILNNAMVAPEEIFQPEPPEPEENLFKVGQKLEAVDKKN-PQLICCATVDAIKD---------DQIHVTFDGWR 182 (265)
T ss_dssp HHHHHHHHTTCCBCCGGGSCCCCCCCSSCCCCTTCEEEEECTTS-TTCEEEEEEEEEET---------TEEEEEETTSC
T ss_pred HHHHHHhhcCCccCCHHHhcccCCCCcccccccCcEEEeccCCC-CCCEEEEEEEEecC---------CEEEEEeCCCC
Confidence 111222211 2234688888888765544 56889999999962 25888886443
No 249
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.58 E-value=36 Score=27.64 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=32.2
Q ss_pred eEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccccccccc
Q 016887 144 EFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIKRHVRQR 198 (381)
Q Consensus 144 EFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk~rvR~r 198 (381)
---|+.+.|++||-..+.-- .++..+.|.|-.||.++ -|++. ++|+.
T Consensus 27 ~vaak~~d~n~WyRakV~~v-----~~~~~veVl~~DyGn~~--~V~~~-~LR~L 73 (85)
T 2eqk_A 27 HCAVKIQDKNQWRRGQIIRM-----VTDTLVEVLLYDVGVEL--VVNVD-CLRKL 73 (85)
T ss_dssp EEEEECSSSCCEEEEEEEEE-----CSSSEEEEECTTTCCEE--EEETT-TEEEC
T ss_pred EEEEEeCCCCeEEEEEEEEe-----cCCCeEEEEEEccCCEE--EEEcc-ccccC
Confidence 34577777889999886633 23355999999999875 35544 55554
No 250
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=26.42 E-value=93 Score=31.49 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=36.6
Q ss_pred ccccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcceeecc
Q 016887 208 VAVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRP 272 (381)
Q Consensus 208 ~~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC~rp 272 (381)
..+++|+++++... +..||-|.|++|.. .-.+.|+|..-.+.+.|++.+|+..|
T Consensus 410 ~~~~~G~~c~a~~~---d~~wyRa~I~~v~~--------~~~~~V~fvDyGn~e~v~~~~Lr~l~ 463 (570)
T 3bdl_A 410 YAPRRGEFCIAKFV---DGEWYRARVEKVES--------PAKIHVFYIDYGNREVLPSTRLGTLS 463 (570)
T ss_dssp CCCCTTCEEEEECT---TSCEEEEEEEEEEE--------TTEEEEEETTTCCEEEECGGGEECCC
T ss_pred cCCCcCCEEEEEEC---CCCEEEEEEEEEcC--------CCeEEEEEEeCCCeEEEEHHHCccCC
Confidence 35779998776433 45799999999975 12456666665555667777766554
No 251
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.38 E-value=95 Score=25.14 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=37.4
Q ss_pred cccCCceEEE-eeecCCcceEeeEEEeeeeecccCCCCcceEEEEEeecCCccccccCcceeecccccHHHH
Q 016887 209 AVLPGDLILC-FQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRKVCRRPETDYRLQ 279 (381)
Q Consensus 209 ~v~~Gd~VcC-fqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~kvC~rp~~Dp~l~ 279 (381)
..+.|+.|.+ |.+ +..||=|.|..+.+-. .+.|.|..-.+++.|++. |.||- ||.|+
T Consensus 21 ~~k~g~~vaak~~d---~n~WyRakV~~v~~~~--------~veVl~~DyGn~~~V~~~--~LR~L-~~~l~ 78 (85)
T 2eqk_A 21 KWENDMHCAVKIQD---KNQWRRGQIIRMVTDT--------LVEVLLYDVGVELVVNVD--CLRKL-EENLK 78 (85)
T ss_dssp CCCSSCEEEEECSS---SCCEEEEEEEEECSSS--------EEEEECTTTCCEEEEETT--TEEEC-CHHHH
T ss_pred CccCCCEEEEEeCC---CCeEEEEEEEEecCCC--------eEEEEEEccCCEEEEEcc--ccccC-CHHHh
Confidence 5678988775 553 4499999999987632 256665555566777766 56654 34443
No 252
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=25.37 E-value=1e+02 Score=26.36 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=28.7
Q ss_pred cccCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhC
Q 016887 12 FRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFS 47 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e~-~n~Yp~r~~rq~LA~kfn 47 (381)
+.||.+||.+|-+.|... ++.+++..+...+-..++
T Consensus 46 ~~~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~ 82 (224)
T 1s1e_A 46 TNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFF 82 (224)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhc
Confidence 458999999999999885 678888877777766664
No 253
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=25.06 E-value=83 Score=24.50 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=27.6
Q ss_pred cCHHHHHHHHHHHHHh---cCCCCCHHHHHH----HHHHhCCCc
Q 016887 14 FNPAEVTEMEGILQEH---HNAMPSREILVA----LAEKFSESP 50 (381)
Q Consensus 14 FT~~QI~eLEk~F~e~---~n~Yp~r~~rq~----LA~kfnlS~ 50 (381)
.|++|+.+|+++|... ++.+++..+... +...++..+
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~~~~~l~~~g~~~ 44 (176)
T 1nya_A 1 TTAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDA 44 (176)
T ss_dssp CCSHHHHHHHHHHHHCCSSCCSSBCSHHHHHHHHHHHHHTSSCS
T ss_pred CcHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHcCCCC
Confidence 3678999999999864 356888877777 566777653
No 254
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=24.51 E-value=49 Score=27.13 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=29.6
Q ss_pred ccccCHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCC
Q 016887 11 AFRFNPAEVTEMEGILQE---HHNAMPSREILVALAEKFSES 49 (381)
Q Consensus 11 RtrFT~~QI~eLEk~F~e---~~n~Yp~r~~rq~LA~kfnlS 49 (381)
.+.||++|+.+|.++|.. .++.+++..+...+ ..++..
T Consensus 20 ~~~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~-~~lg~~ 60 (202)
T 2bec_A 20 ETGFSQASLLRLHHRFRALDRNKKGYLSRMDLQQI-GALAVN 60 (202)
T ss_dssp HHCCCHHHHHHHHHHHHHHCSSCSSCCCHHHHHTC-HHHHHS
T ss_pred ccCCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHH-HhcCCC
Confidence 347999999999999986 35778999888776 655543
No 255
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5
Probab=24.44 E-value=65 Score=25.28 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=26.8
Q ss_pred cCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHhC
Q 016887 14 FNPAEVTEMEGILQEH----HNAMPSREILVALAEKFS 47 (381)
Q Consensus 14 FT~~QI~eLEk~F~e~----~n~Yp~r~~rq~LA~kfn 47 (381)
+|+.++.+|+++|... ++.+++..+...+...++
T Consensus 2 ls~~~~~~l~~~F~~~~D~d~dG~i~~~E~~~~l~~~~ 39 (185)
T 2sas_A 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYK 39 (185)
T ss_dssp CCHHHHHHHHHHHHHHTCTTCSSEECHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHheeCCCCCeEcHHHHHHHHHHHH
Confidence 5788999999998776 567888888777777665
No 256
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=24.39 E-value=1.1e+02 Score=25.68 Aligned_cols=38 Identities=0% Similarity=-0.094 Sum_probs=29.3
Q ss_pred cccCHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHH-hCCC
Q 016887 12 FRFNPAEVTEMEGILQE---HHNAMPSREILVALAEK-FSES 49 (381)
Q Consensus 12 trFT~~QI~eLEk~F~e---~~n~Yp~r~~rq~LA~k-fnlS 49 (381)
..||.+|+.+|.++|.. .++.+++..+...+-.. ++..
T Consensus 40 ~~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~lg~~ 81 (219)
T 3cs1_A 40 REKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLD 81 (219)
T ss_dssp CSSSHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCGG
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhCCC
Confidence 46899999999999976 34678998877765555 6764
No 257
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.46 E-value=1.4e+02 Score=23.01 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=34.7
Q ss_pred ccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCccccCCcccccchhHhhhhc
Q 016887 11 AFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKF-SESPERKGKIMVQMKQVWNWFQN 69 (381)
Q Consensus 11 RtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kf-nlS~~RaGk~~Vq~kQVk~WFQN 69 (381)
...||.+|-..|++++...+. -....=.+||+.| |-+ .+||+.=|++
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~--~~~~rW~~IA~~vpGRT----------~~qcr~Ry~~ 65 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPR--GSSDCWDKIARCVPSKS----------KEDCIARYKL 65 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCS--SSHHHHHHHGGGCSSSC----------HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CCCchHHHHHHHcCCCC----------HHHHHHHHHH
Confidence 446999999999999998421 1467789999999 454 4888854443
No 258
>2k0m_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodospirillum rubrum atcc 11170}
Probab=23.43 E-value=59 Score=26.92 Aligned_cols=32 Identities=34% Similarity=0.536 Sum_probs=22.7
Q ss_pred EeeeeecccCCCCcceEEEEEeecCCccccccCcc
Q 016887 233 VLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLRK 267 (381)
Q Consensus 233 V~~Vqrr~Hd~~gCrC~FlVrw~hdp~ee~v~l~k 267 (381)
|..|+-+.|+ -+.||.|+||= |.+++.++.+|
T Consensus 63 i~~i~V~~h~-~~srCFfvvR~--DGt~~DFSy~K 94 (104)
T 2k0m_A 63 VRNFEVRSAD-YGTQCFWILRT--DGSEERFSYKK 94 (104)
T ss_dssp EEEEEEEESS-SSCEEEEEEET--TSCEEECCGGG
T ss_pred cceEEEecCC-CCCcEEEEEEe--CCCeeeeeHHH
Confidence 6667777784 48999999964 55666665544
No 259
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=23.38 E-value=35 Score=23.51 Aligned_cols=22 Identities=32% Similarity=0.702 Sum_probs=17.9
Q ss_pred cccccccCCceEE--EeeecCCcceEe
Q 016887 205 SECVAVLPGDLIL--CFQEGKDQALYF 229 (381)
Q Consensus 205 sEC~~v~~Gd~Vc--Cfqeg~d~alyy 229 (381)
..|..-++||+-| |..||+ +||
T Consensus 9 ercpnpregdwcchkcvpegk---rfy 32 (36)
T 4b2u_A 9 ERCPNPREGDWCCHKCVPEGK---RFY 32 (36)
T ss_dssp SBCCCGGGCCSSSSEEEEETT---EEE
T ss_pred ccCcCCCccCeeeecccccCc---eee
Confidence 4699999999988 888877 565
No 260
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=23.11 E-value=42 Score=22.73 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCccccCCcccccchhHhhhhcch
Q 016887 39 LVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (381)
Q Consensus 39 rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR 71 (381)
..+||+.+|+|. ..|..|..+++
T Consensus 21 ~~~lA~~~gis~----------~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSN----------VAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSS
T ss_pred HHHHHHHHCCCH----------HHHHHHHcCCC
Confidence 578999999985 77999998864
No 261
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=22.84 E-value=1.4e+02 Score=25.42 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=29.4
Q ss_pred cccCCceEEEeeecCCcceEeeEEEeeeeecccCCCCcceEEEEEe-ecCCccc
Q 016887 209 AVLPGDLILCFQEGKDQALYFDAHVLDAQRRRHDVRGCRCRFLVRY-DHDQSEE 261 (381)
Q Consensus 209 ~v~~Gd~VcCfqeg~d~alyyDA~V~~Vqrr~Hd~~gCrC~FlVrw-~hdp~ee 261 (381)
.+++|+++++.. . ++..||-|.|.++... + .+.|.| |.|+.+.
T Consensus 47 ~~~~G~~c~A~~-~-~d~~wyRa~I~~~~~~-----~---~~~V~fvDyGn~~~ 90 (169)
T 3ntk_A 47 DLKEGALCVAQF-P-EDEVFYRAQIRKVLDD-----G---KCEVHFIDFGNNAV 90 (169)
T ss_dssp CCCTTCEEEEEE-T-TTTEEEEEEEEEECST-----T---CEEEEETTTTEEEE
T ss_pred CCCCCCEEEEEE-C-CCCcEEEEEEEEECCC-----C---EEEEEEEecCCeEE
Confidence 678999877643 2 2568999999998652 2 455666 5666655
No 262
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=22.21 E-value=45 Score=22.46 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCccccCCcccccchhHhhhhcch
Q 016887 39 LVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (381)
Q Consensus 39 rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR 71 (381)
..+||+.+|+|. ..|..|..+++
T Consensus 17 ~~~lA~~~gis~----------~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSR----------QTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTSC
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 578999999985 77999998874
No 263
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=22.11 E-value=19 Score=26.24 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=26.5
Q ss_pred ehhhhhhccccCCCCC-eEEEEecCCCCCcccccccc
Q 016887 157 DVSAFLAQRNFDTADP-EVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 157 DV~~fL~~r~l~tge~-elrVrf~gFg~eeDEwvnvk 192 (381)
.|.-.|.+|....|.. ++.|+..|| +++-|-+..
T Consensus 2 ~VE~Ild~r~~~~g~~~~YlVKWkgy--~~~TWEp~~ 36 (54)
T 1x3p_A 2 VAESVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQD 36 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTC
T ss_pred eEEEEEEEEEcCCCcEEEEEEEECCC--CcCCccchH
Confidence 4566778886555888 999999999 778897765
No 264
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=22.01 E-value=57 Score=22.83 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHh
Q 016887 16 PAEVTEMEGILQE---HHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWN 65 (381)
Q Consensus 16 ~~QI~eLEk~F~e---~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~ 65 (381)
+++..+|+.+|.. .++.+++..+...+-..++. ...++..+++.
T Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~------~~~~~~~~~~~ 49 (83)
T 1yx7_A 3 CKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDA------YKALSKDKVKE 49 (83)
T ss_dssp SCSCTHHHHHHHHHSSSCSSSCSHHHHHHHHHHHTT------CTTTTTTTTHH
T ss_pred ccHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcc------ccCCCHHHHHH
Confidence 3455667777764 45679999988888888872 02345677777
No 265
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=21.98 E-value=82 Score=23.49 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=35.9
Q ss_pred CCCccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhHhh
Q 016887 8 GGPAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAIRA 76 (381)
Q Consensus 8 ~~pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~Kk 76 (381)
......+|+.|.+-|.-.++. ...+++|+.||+|. .-|+.+.++=+.|.+.
T Consensus 16 ~~~~~~Lt~~e~~vl~l~~~g--------~s~~eIA~~l~is~----------~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 16 ERDVNQLTPRERDILKLIAQG--------LPNKMIARRLDITE----------STVKVHVKHMLKKMKL 66 (82)
T ss_dssp -CCGGGSCHHHHHHHHHHTTT--------CCHHHHHHHHTSCH----------HHHHHHHHHHHHHTTC
T ss_pred HHHHccCCHHHHHHHHHHHcC--------CCHHHHHHHHCcCH----------HHHHHHHHHHHHHHcC
Confidence 344457999998888774322 24679999999985 7788877766665544
No 266
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=21.57 E-value=52 Score=33.25 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=37.9
Q ss_pred ceeEEeeccCCCceeehhhhhhccccCCCCCeEEEEecCCCCCcccccccc
Q 016887 142 FMEFEAKSARDGAWYDVSAFLAQRNFDTADPEVQVRFAGFGAEEDEWVNIK 192 (381)
Q Consensus 142 ~lEFEA~S~~DgAWYDV~~fL~~r~l~tge~elrVrf~gFg~eeDEwvnvk 192 (381)
.|-+||.--++-...=|++..+-. +..|+|+|.|..++.|+|+++.
T Consensus 380 gmkLEAvD~~np~~icvATV~~v~-----~~~~~i~fDgw~~~~d~w~~~~ 425 (447)
T 3h6z_A 380 GMSLECADLMDPRLVCVATVARVV-----GRLLKVHFDGWTDEYDQWLDCE 425 (447)
T ss_dssp TCEEEEECTTSTTCEEEEEEEEEE-----TTEEEEECTTSCGGGCEEEETT
T ss_pred CCEEEeecCCCCCcEEEEEEeEec-----CCEEEEEeCCCCCcCCEEEecC
Confidence 478999998899888888765532 3679999999999999999875
No 267
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=21.54 E-value=7.9 Score=32.61 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=19.4
Q ss_pred CCCCCCCCCCccccCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhCCC
Q 016887 1 MGRPPSNGGPAFRFNPAEVTEMEGILQEH-HNAMPSREILVALAEKFSES 49 (381)
Q Consensus 1 mGrPps~~~pRtrFT~~QI~eLEk~F~e~-~n~Yp~r~~rq~LA~kfnlS 49 (381)
||.-.|.-..+|.|+.+||.++=+.|... ++.+++..+...+-..+++.
T Consensus 3 MG~~~s~~~~~t~ls~~ei~~~f~~fD~~~~~G~is~~El~~~l~~~~~~ 52 (211)
T 2ggz_A 3 MGNGKSIAGDQKAVPTQETHVWYRTFMMEYPSGLQTLHEFKTLLGLQGLN 52 (211)
T ss_dssp ---------------------CCCSHHHHCTTSEEEHHHHHHHTTCCSCC
T ss_pred CCcccCcccccCCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCC
Confidence 77666665667789999988777777655 57788887777766666554
No 268
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A
Probab=21.52 E-value=1e+02 Score=25.39 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=29.6
Q ss_pred ccCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCC
Q 016887 13 RFNPAEVTEMEGILQEH---HNAMPSREILVALAEKFSES 49 (381)
Q Consensus 13 rFT~~QI~eLEk~F~e~---~n~Yp~r~~rq~LA~kfnlS 49 (381)
.|+.+|+.+|.++|... ++.+++..+...+-..++..
T Consensus 45 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~ 84 (191)
T 3k21_A 45 QSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLK 84 (191)
T ss_dssp HCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCCC
Confidence 47888999999999763 45788888888888888765
No 269
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=21.47 E-value=26 Score=28.17 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=35.3
Q ss_pred CCCCCCCCCCccccCHHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcc
Q 016887 1 MGRPPSNGGPAFRFNPAE-VTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNR 70 (381)
Q Consensus 1 mGrPps~~~pRtrFT~~Q-I~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNR 70 (381)
||||... |.++ +..-.++|.++ =...-..++||+..|+|. .-+-..|.||
T Consensus 1 M~R~~~~-------~r~~Il~aA~~l~~~~---G~~~~t~~~Ia~~agvs~----------~t~Y~~F~sK 51 (195)
T 2dg7_A 1 MARWDPG-------AEQRLKRAALELYSEH---GYDNVTVTDIAERAGLTR----------RSYFRYFPDK 51 (195)
T ss_dssp CCSSCTT-------HHHHHHHHHHHHHHHS---CGGGCCHHHHHHHTTCCH----------HHHHHHCSST
T ss_pred CCCCcHH-------HHHHHHHHHHHHHHhc---CccccCHHHHHHHhCCCH----------HHHHHHcCCH
Confidence 8888643 3344 35566778773 345556688999999984 5588899988
No 270
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=21.26 E-value=67 Score=24.19 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=30.2
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhh
Q 016887 14 FNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQ 68 (381)
Q Consensus 14 FT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQ 68 (381)
+|++|+.++=+.|-..++.+++..+...+-..++... +..+++..|.
T Consensus 2 ls~~el~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~--------~~~~~~~~~~ 48 (145)
T 2bl0_B 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNP--------TNAELNTIKG 48 (145)
T ss_dssp CCHHHHHHHHHHHCTTCSSCEEGGGHHHHHHHTTCCC--------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCcCccCHHHHHHHHHHhCCCC--------CHHHHHHHHH
Confidence 6778844444444444567888888888888877643 4455665554
No 271
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=21.26 E-value=20 Score=28.13 Aligned_cols=20 Identities=10% Similarity=0.435 Sum_probs=8.4
Q ss_pred ccccchhHhhhhcchhhHhh
Q 016887 57 MVQMKQVWNWFQNRRYAIRA 76 (381)
Q Consensus 57 ~Vq~kQVk~WFQNRR~K~Kk 76 (381)
.+...++..||+++|...+.
T Consensus 4 ~~~~~~~~~W~~~~r~~~~~ 23 (97)
T 1b72_A 4 NTPTARTFDWMKVKRNPPKT 23 (97)
T ss_dssp ----CCCCGGGGC-------
T ss_pred CCCCcccccccccccCCCCC
Confidence 34568899999999987654
No 272
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=20.91 E-value=49 Score=22.69 Aligned_cols=24 Identities=13% Similarity=-0.090 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCccccCCcccccchhHhhhhcchh
Q 016887 39 LVALAEKFSESPERKGKIMVQMKQVWNWFQNRRY 72 (381)
Q Consensus 39 rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~ 72 (381)
..+||+.+|+|. ..|..|..+++.
T Consensus 19 q~~lA~~~gis~----------~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQ----------QSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCH----------HHHHHHHTTCCS
T ss_pred HHHHHHHhCCCH----------HHHHHHHcCCCC
Confidence 578999999985 779999988743
No 273
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=20.86 E-value=58 Score=26.41 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=32.5
Q ss_pred cccCHHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcch
Q 016887 12 FRFNPAEV-TEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (381)
Q Consensus 12 trFT~~QI-~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR 71 (381)
..-|.++| ..-.++|.++ =+..-...+||+..|+|. .-+-..|.||-
T Consensus 28 ~~~~r~~Il~aA~~l~~~~---G~~~~t~~~IA~~aGvs~----------~t~Y~~F~sK~ 75 (222)
T 3bru_A 28 ASLAHQSLIRAGLEHLTEK---GYSSVGVDEILKAARVPK----------GSFYHYFRNKA 75 (222)
T ss_dssp GGGHHHHHHHHHHHHHHHS---CTTTCCHHHHHHHHTCCH----------HHHHHHCSSHH
T ss_pred hhhHHHHHHHHHHHHHHHc---CCCcCcHHHHHHHhCCCc----------chhhhhCCCHH
Confidence 34555554 5567778874 345566788999999984 44778888874
No 274
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.69 E-value=1.2e+02 Score=23.88 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=35.1
Q ss_pred CccccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccCCcccccchhHhhhhcchhhH
Q 016887 10 PAFRFNPAEVTEMEGILQEHHNAMPSREILVALAEKFSESPERKGKIMVQMKQVWNWFQNRRYAI 74 (381)
Q Consensus 10 pRtrFT~~QI~eLEk~F~e~~n~Yp~r~~rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR~K~ 74 (381)
+.-.+|+.|.+-|+-+++. + ..+++|+.|++|+ .-|+.+.++=+.|.
T Consensus 31 ~~~~Lt~re~~Vl~l~~~G----~----s~~EIA~~L~iS~----------~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 31 GDKRLSPKESEVLRLFAEG----F----LVTEIAKKLNRSI----------KTISSQKKSAMMKL 77 (99)
T ss_dssp SSSSCCHHHHHHHHHHHHT----C----CHHHHHHHHTSCH----------HHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHcC----C----CHHHHHHHHCcCH----------HHHHHHHHHHHHHH
Confidence 3567999999999776543 2 2389999999985 78988877665554
No 275
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=20.28 E-value=53 Score=22.93 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.3
Q ss_pred HHHHHHHhCCCccccCCcccccchhHhhhhcch
Q 016887 39 LVALAEKFSESPERKGKIMVQMKQVWNWFQNRR 71 (381)
Q Consensus 39 rq~LA~kfnlS~~RaGk~~Vq~kQVk~WFQNRR 71 (381)
.++||+.+|+|. ..|..|..+++
T Consensus 26 ~~~lA~~~gis~----------~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSE----------NTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCH----------HHHHHHHTTSS
T ss_pred HHHHHHHHCcCH----------HHHHHHHcCCC
Confidence 578999999985 77999998874
No 276
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.08 E-value=28 Score=26.39 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=31.3
Q ss_pred CCceeehhhhhhcccc---CCC--CCeEEEEecCCCCCccccccc
Q 016887 152 DGAWYDVSAFLAQRNF---DTA--DPEVQVRFAGFGAEEDEWVNI 191 (381)
Q Consensus 152 DgAWYDV~~fL~~r~l---~tg--e~elrVrf~gFg~eeDEwvnv 191 (381)
+--||.|.-.|.+|.. .+| ..++.|+..|++.++--|=+.
T Consensus 8 ~pe~~~VErIl~~r~~~~~~~g~~~~eYLVKWkgl~y~e~TWE~~ 52 (68)
T 2epb_A 8 NPDYVEVDRILEVAHTKDAETGEEVTHYLVKWCSLPYEESTWELE 52 (68)
T ss_dssp CSSCCCCCEEEEEEEEECSSSCCEEEEEEEECTTSCGGGCCEEET
T ss_pred CCCceEEeEEEEEEecccccCCCcceEEEEEEcCCChhcCccccc
Confidence 3458888888888753 236 568999999999999999654
Done!