Query 016888
Match_columns 381
No_of_seqs 157 out of 765
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 03:42:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1724 SCF ubiquitin ligase, 100.0 5E-42 1.1E-46 309.5 15.1 146 13-160 2-156 (162)
2 COG5201 SKP1 SCF ubiquitin lig 100.0 1.2E-35 2.6E-40 259.3 13.1 141 16-160 2-151 (158)
3 smart00512 Skp1 Found in Skp1 99.9 5.8E-25 1.3E-29 182.9 10.7 100 16-116 2-104 (104)
4 PF01466 Skp1: Skp1 family, di 99.9 1.1E-22 2.3E-27 162.8 4.6 72 89-160 1-72 (78)
5 PF03931 Skp1_POZ: Skp1 family 99.6 2.2E-16 4.7E-21 121.2 5.8 60 17-80 2-61 (62)
6 KOG3473 RNA polymerase II tran 99.4 4.3E-13 9.3E-18 113.0 7.1 98 13-116 14-112 (112)
7 PF00651 BTB: BTB/POZ domain; 97.9 6.3E-05 1.4E-09 60.9 7.8 99 15-129 10-109 (111)
8 PHA02713 hypothetical protein; 97.7 0.00019 4.1E-09 76.0 9.6 107 15-141 25-133 (557)
9 smart00225 BTB Broad-Complex, 97.1 0.0013 2.7E-08 49.7 5.8 85 22-124 5-90 (90)
10 PHA03098 kelch-like protein; P 97.0 0.0034 7.3E-08 65.1 9.2 98 16-135 10-109 (534)
11 PHA02790 Kelch-like protein; P 96.7 0.0028 6E-08 65.9 6.5 97 18-132 23-121 (480)
12 KOG4441 Proteins containing BT 96.1 0.015 3.2E-07 62.4 7.3 95 16-129 37-132 (571)
13 KOG2716 Polymerase delta-inter 88.3 2.2 4.7E-05 41.6 8.0 102 16-134 5-108 (230)
14 KOG4350 Uncharacterized conser 81.9 4 8.7E-05 43.2 6.9 147 17-174 46-215 (620)
15 KOG3433 Protein involved in me 81.1 1.6 3.4E-05 41.4 3.3 38 108-150 161-200 (203)
16 COG5124 Protein predicted to b 79.8 1.4 2.9E-05 41.8 2.4 31 115-150 174-204 (209)
17 KOG0783 Uncharacterized conser 70.4 5.3 0.00011 45.6 4.3 115 10-141 707-825 (1267)
18 KOG4682 Uncharacterized conser 66.7 9.6 0.00021 40.3 5.1 112 24-156 77-192 (488)
19 PF02214 BTB_2: BTB/POZ domain 64.9 3.1 6.8E-05 33.5 1.0 83 24-123 6-94 (94)
20 KOG2002 TPR-containing nuclear 51.5 8.4 0.00018 44.3 1.8 7 203-209 882-888 (1018)
21 PF11822 DUF3342: Domain of un 51.4 25 0.00055 35.9 5.0 91 25-131 13-104 (317)
22 KOG2422 Uncharacterized conser 51.0 11 0.00024 41.4 2.5 40 288-328 151-193 (665)
23 PF03962 Mnd1: Mnd1 family; I 47.9 16 0.00034 34.2 2.8 42 104-150 144-187 (188)
24 PF07928 Vps54: Vps54-like pro 46.7 6.5 0.00014 35.0 0.0 121 24-184 1-126 (135)
25 PF14384 DUF4415: Domain of un 38.9 27 0.00059 27.0 2.4 26 307-332 34-59 (62)
26 PLN03083 E3 UFM1-protein ligas 38.2 14 0.0003 41.9 0.9 29 306-334 511-540 (803)
27 KOG2422 Uncharacterized conser 29.7 25 0.00054 38.8 1.1 9 194-202 67-75 (665)
28 PRK05365 malonic semialdehyde 29.6 29 0.00064 31.6 1.4 34 106-149 130-163 (195)
29 PF09278 MerR-DNA-bind: MerR, 28.3 73 0.0016 23.8 3.2 39 132-184 13-51 (65)
30 KOG0511 Ankyrin repeat protein 27.0 1.6E+02 0.0035 31.4 6.3 108 21-132 296-431 (516)
31 cd02148 Nitroreductase_5 Nitro 26.0 34 0.00073 30.8 1.2 33 107-149 124-156 (185)
32 PF03656 Pam16: Pam16; InterP 25.8 56 0.0012 29.1 2.5 30 130-159 51-80 (127)
33 PF05553 DUF761: Cotton fibre 24.4 64 0.0014 23.2 2.1 25 306-332 3-27 (38)
34 PF06375 BLVR: Bovine leukaemi 23.4 27 0.00058 32.2 0.0 8 150-157 2-9 (154)
35 PF12112 DUF3579: Protein of u 21.7 51 0.0011 28.1 1.3 13 321-333 23-35 (92)
36 PF01886 DUF61: Protein of unk 21.5 80 0.0017 28.3 2.6 45 308-354 1-45 (132)
37 KOG1665 AFH1-interacting prote 20.6 1.1E+02 0.0025 30.4 3.6 91 15-123 8-103 (302)
38 PF01484 Col_cuticle_N: Nemato 20.4 72 0.0016 23.0 1.8 23 303-325 30-52 (53)
No 1
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-42 Score=309.52 Aligned_cols=146 Identities=36% Similarity=0.588 Sum_probs=134.4
Q ss_pred CCCccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCC--------
Q 016888 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS-------- 84 (381)
Q Consensus 13 ~~s~~IkL~SsDG~iFeVs~eaA~qS~tIr~mL~d~g~~~~e~~~IPLP~nVss~iLkkIIEYCehHk~~~~-------- 84 (381)
|++++|+|+|+||++|+|+.++|++|.+|++++.+.|++... .+|||| +|+|.||++||+||+||+.+++
T Consensus 2 ~~~~~ikL~SsDG~~f~ve~~~a~~s~~i~~~~~~~~~~~~~-~~IPl~-nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~ 79 (162)
T KOG1724|consen 2 MSKKKIKLESSDGEIFEVEEEVARQSQTISAHMIEDGCADEN-DPIPLP-NVTSKILKKVIEWCKKHKDDDPANPEDKEL 79 (162)
T ss_pred CCCCeEEEEccCCceeehhHHHHHHhHHHHHHHHHcCCCccC-CccccC-ccCHHHHHHHHHHHHHcccccccccccccc
Confidence 667899999999999999999999999999999999986432 699999 7999999999999999998643
Q ss_pred -CcccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 016888 85 -SNKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (381)
Q Consensus 85 -s~~ei~eWD~eFLkiD~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~nD~TpEEEeEi~k~ 160 (381)
....+++||++||++|..+||+||.|||||+|++|+++||++||+||+||||+|||.+|||++|+|+||+.+++++
T Consensus 80 ~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e 156 (162)
T KOG1724|consen 80 PEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKE 156 (162)
T ss_pred cccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhc
Confidence 2234899999999999999999999999999999999999999999999999999999999999999988777765
No 2
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=259.35 Aligned_cols=141 Identities=34% Similarity=0.514 Sum_probs=128.5
Q ss_pred ccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCC---C------c
Q 016888 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGS---S------N 86 (381)
Q Consensus 16 ~~IkL~SsDG~iFeVs~eaA~qS~tIr~mL~d~g~~~~e~~~IPLP~nVss~iLkkIIEYCehHk~~~~---s------~ 86 (381)
+.|.|.|.||++|.|+..+|..|-+|++|+.+.+- .+.|||+| +|.|.+|.+|++||+||..... + -
T Consensus 2 s~i~l~s~dge~F~vd~~iAerSiLikN~l~d~~~---~n~p~p~p-nVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 2 SMIELESIDGEIFRVDENIAERSILIKNMLCDSTA---CNYPIPAP-NVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred CceEEEecCCcEEEehHHHHHHHHHHHHHhccccc---cCCCCccc-chhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 47999999999999999999999999998876542 47889999 8999999999999999997431 1 1
Q ss_pred ccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 016888 87 KERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (381)
Q Consensus 87 ~ei~eWD~eFLkiD~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~nD~TpEEEeEi~k~ 160 (381)
.....||..|+.+|+++|++++.|||||+|++|+++||+.||.+|+||||+|||++|||++||||||++.++++
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkE 151 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKE 151 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 23557999999999999999999999999999999999999999999999999999999999999999999986
No 3
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=99.92 E-value=5.8e-25 Score=182.94 Aligned_cols=100 Identities=32% Similarity=0.523 Sum_probs=89.2
Q ss_pred ccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCc---ccchhh
Q 016888 16 SYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSN---KERKSF 92 (381)
Q Consensus 16 ~~IkL~SsDG~iFeVs~eaA~qS~tIr~mL~d~g~~~~e~~~IPLP~nVss~iLkkIIEYCehHk~~~~s~---~ei~eW 92 (381)
++|+|+|+||++|.|+.++|++|++|++|+.+.|.+.+...+|||| +|++.+|++|++||+||+.++... ..+++|
T Consensus 2 ~~v~L~S~Dg~~f~v~~~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~-~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 2 KYIKLISSDGEVFEVEREVARQSKTIKAMIEDLGVDDENNNPIPLP-NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred CeEEEEeCCCCEEEecHHHHHHHHHHHHHHHccCcccCCCCCccCC-CcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 5899999999999999999999999999998777654334689999 899999999999999999875432 358999
Q ss_pred hhhhccCChHHHHHHHhhcccCCC
Q 016888 93 DEKFIRMDTKRLCELTSAADSLQL 116 (381)
Q Consensus 93 D~eFLkiD~~~LfeLI~AAnYLdI 116 (381)
|.+|++++.+.||+|+.||+||+|
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999997
No 4
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=99.86 E-value=1.1e-22 Score=162.78 Aligned_cols=72 Identities=40% Similarity=0.658 Sum_probs=62.2
Q ss_pred chhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhccccc
Q 016888 89 RKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLEPLKN 160 (381)
Q Consensus 89 i~eWD~eFLkiD~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~nD~TpEEEeEi~k~ 160 (381)
+++||++|++++.+.||+|+.||+||+|++|+++||++||.+|+||||+|||++|||++|+|+||+++++++
T Consensus 1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e 72 (78)
T PF01466_consen 1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKE 72 (78)
T ss_dssp HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHH
T ss_pred CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999997764
No 5
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=99.64 E-value=2.2e-16 Score=121.22 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=53.5
Q ss_pred cEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcC
Q 016888 17 YIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQ 80 (381)
Q Consensus 17 ~IkL~SsDG~iFeVs~eaA~qS~tIr~mL~d~g~~~~e~~~IPLP~nVss~iLkkIIEYCehHk 80 (381)
+|+|+|+||++|.|+.++|++|++|++|+.+.+.. ..+|||| +|++.+|++|++||+||+
T Consensus 2 ~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~~~~~---~~~Ipl~-~v~~~~L~kViewc~~H~ 61 (62)
T PF03931_consen 2 YVKLVSSDGQEFEVSREAAKQSKTIKNMLEDLGDE---DEPIPLP-NVSSRILKKVIEWCEHHK 61 (62)
T ss_dssp EEEEEETTSEEEEEEHHHHTTSHHHHHHHHCTCCC---GTEEEET-TS-HHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEeeHHHHHHhHHHHHHHhhhccc---ccccccC-ccCHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999866543 2289999 899999999999999996
No 6
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=99.41 E-value=4.3e-13 Score=113.00 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=84.1
Q ss_pred CCCccEEEEeCCCCEEEecHHHHHHcHHHHHHHhhcCCCC-CCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCcccchh
Q 016888 13 MMKSYIWLQTADGSIQQVEQEVAMFCPLICQEVIQKGMGS-SKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKS 91 (381)
Q Consensus 13 ~~s~~IkL~SsDG~iFeVs~eaA~qS~tIr~mL~d~g~~~-~e~~~IPLP~nVss~iLkkIIEYCehHk~~~~s~~ei~e 91 (381)
|.+.+|+|+|+||.+|.|.+++|+.|+||+.|+...|..+ .....+-++ +|.+.+|+||.+|+.+...+..+..++|+
T Consensus 14 p~~~yVkLvS~Ddhefiikre~AmtSgTiraml~gpg~~se~~~n~v~f~-di~shiLeKvc~Yl~Yk~rY~~~s~eiPe 92 (112)
T KOG3473|consen 14 PDSMYVKLVSSDDHEFIIKREHAMTSGTIRAMLSGPGVFSEAEKNEVYFR-DIPSHILEKVCEYLAYKVRYTNSSTEIPE 92 (112)
T ss_pred cchhheEeecCCCcEEEEeehhhhhhhHHHHHHcCCccccccccceEEec-cchHHHHHHHHHHhhheeeeccccccCCC
Confidence 4467999999999999999999999999999988666433 345678898 79999999999999987766655568898
Q ss_pred hhhhhccCChHHHHHHHhhcccCCC
Q 016888 92 FDEKFIRMDTKRLCELTSAADSLQL 116 (381)
Q Consensus 92 WD~eFLkiD~~~LfeLI~AAnYLdI 116 (381)
| .+.+++.++|+.||+||++
T Consensus 93 F-----~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 93 F-----DIPPEMALELLMAANYLEC 112 (112)
T ss_pred C-----CCCHHHHHHHHHHhhhhcC
Confidence 8 4789999999999999975
No 7
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.87 E-value=6.3e-05 Score=60.91 Aligned_cols=99 Identities=23% Similarity=0.278 Sum_probs=75.3
Q ss_pred CccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCcccchhhh
Q 016888 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (381)
Q Consensus 15 s~~IkL~SsDG~iFeVs~eaA~-qS~tIr~mL~d~g~~~~e~~~IPLP~nVss~iLkkIIEYCehHk~~~~s~~ei~eWD 93 (381)
...++|+..||..|.|...++. .|+.+++++...+........|+++ ++++.++..+++||..... .++
T Consensus 10 ~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~Y~~~~------~~~--- 79 (111)
T PF00651_consen 10 FSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLP-DVSPEAFEAFLEYMYTGEI------EIN--- 79 (111)
T ss_dssp S--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEET-TSCHHHHHHHHHHHHHSEE------EEE---
T ss_pred CCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccc-cccccccccccccccCCcc------cCC---
Confidence 4579999999999999999985 6999999987663222223468888 7999999999999943321 111
Q ss_pred hhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHH
Q 016888 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALAR 129 (381)
Q Consensus 94 ~eFLkiD~~~LfeLI~AAnYLdIk~LldL~ck~VA~ 129 (381)
..+.+.+|+.+|++|+|+.|...|+..+..
T Consensus 80 ------~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 80 ------SDENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp -------TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 356689999999999999999999998754
No 8
>PHA02713 hypothetical protein; Provisional
Probab=97.66 E-value=0.00019 Score=76.03 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=84.6
Q ss_pred CccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCC-CCcccccCCCCCHHHHHHHHHHHHhcCCCCCCcccchhh
Q 016888 15 KSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSS-KNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSF 92 (381)
Q Consensus 15 s~~IkL~SsDG~iFeVs~eaA~-qS~tIr~mL~d~g~~~~-e~~~IPLP~nVss~iLkkIIEYCehHk~~~~s~~ei~eW 92 (381)
-+.|+|...+|+.|.+.+.++. .|+.++.|+.. ++-++ ....|.|. .|++.+|+.||+|+-...
T Consensus 25 l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~-~~~e~~~~~~v~l~-~v~~~~~~~ll~y~Yt~~------------ 90 (557)
T PHA02713 25 LCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTT-PMIIRDLVTRVNLQ-MFDKDAVKNIVQYLYNRH------------ 90 (557)
T ss_pred CCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcC-CchhhccCceEEec-cCCHHHHHHHHHHhcCCC------------
Confidence 4578998888999999999887 68999999753 33221 24568897 799999999999986631
Q ss_pred hhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHh
Q 016888 93 DEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 141 (381)
Q Consensus 93 D~eFLkiD~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe 141 (381)
++.+.+.+|+.||++|+|+.|.++||..+...+.-.+-=+|..
T Consensus 91 ------i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~ 133 (557)
T PHA02713 91 ------ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYH 133 (557)
T ss_pred ------CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHH
Confidence 2355699999999999999999999999988776655555543
No 9
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.12 E-value=0.0013 Score=49.73 Aligned_cols=85 Identities=22% Similarity=0.248 Sum_probs=65.3
Q ss_pred eCCCCEEEecHHHHHH-cHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCcccchhhhhhhccCC
Q 016888 22 TADGSIQQVEQEVAMF-CPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMD 100 (381)
Q Consensus 22 SsDG~iFeVs~eaA~q-S~tIr~mL~d~g~~~~e~~~IPLP~nVss~iLkkIIEYCehHk~~~~s~~ei~eWD~eFLkiD 100 (381)
..+|..|.|.+.++.. |+.++.++..... ......|.++ +++..++..|++||..-.. .++
T Consensus 5 ~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~-~~~~~~i~l~-~~~~~~f~~~l~~ly~~~~----------------~~~ 66 (90)
T smart00225 5 VVGGKKFKAHKAVLAACSPYFKALFSGDFK-ESKKSEIYLD-DVSPEDFRALLEFLYTGKL----------------DLP 66 (90)
T ss_pred EECCEEEehHHHHHhhcCHHHHHHHcCCCc-cCCCCEEEec-CCCHHHHHHHHHeecCcee----------------ecC
Confidence 5577999999988875 7999988753321 1135578898 7999999999999876532 123
Q ss_pred hHHHHHHHhhcccCCCchHHHHHH
Q 016888 101 TKRLCELTSAADSLQLKPLVDLTS 124 (381)
Q Consensus 101 ~~~LfeLI~AAnYLdIk~LldL~c 124 (381)
...+.+|+.+|.+++++.|.+.|+
T Consensus 67 ~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 67 EENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred HHHHHHHHHHHHHHCcHHHHhhhC
Confidence 336889999999999999999874
No 10
>PHA03098 kelch-like protein; Provisional
Probab=96.96 E-value=0.0034 Score=65.08 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=75.6
Q ss_pred ccEEEEe-CCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCcccchhhh
Q 016888 16 SYIWLQT-ADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (381)
Q Consensus 16 ~~IkL~S-sDG~iFeVs~eaA~-qS~tIr~mL~d~g~~~~e~~~IPLP~nVss~iLkkIIEYCehHk~~~~s~~ei~eWD 93 (381)
+.|+|.- .+|+.|.+.+.++. .|+.++.|+... +. ...|.|+ . +..+|+.|++|+..-.-
T Consensus 10 ~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~-~~---~~~i~l~-~-~~~~~~~~l~y~Ytg~~------------ 71 (534)
T PHA03098 10 CDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNN-FK---ENEINLN-I-DYDSFNEVIKYIYTGKI------------ 71 (534)
T ss_pred CCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCC-CC---CceEEec-C-CHHHHHHHHHHhcCCce------------
Confidence 4566664 68999999999987 489999987633 21 4568897 5 99999999999866431
Q ss_pred hhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCC
Q 016888 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKT 135 (381)
Q Consensus 94 ~eFLkiD~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKT 135 (381)
.++.+.+.+|+.||++|+|+.|.++|++.+...|.-.+
T Consensus 72 ----~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n 109 (534)
T PHA03098 72 ----NITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN 109 (534)
T ss_pred ----EEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence 24556688999999999999999999988877654433
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=96.74 E-value=0.0028 Score=65.86 Aligned_cols=97 Identities=13% Similarity=0.105 Sum_probs=67.9
Q ss_pred EEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccC-CCCCHHHHHHHHHHHHhcCCCCCCcccchhhhhh
Q 016888 18 IWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLP-QRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEK 95 (381)
Q Consensus 18 IkL~SsDG~iFeVs~eaA~-qS~tIr~mL~d~g~~~~e~~~IPLP-~nVss~iLkkIIEYCehHk~~~~s~~ei~eWD~e 95 (381)
-.+...-|..|.+.+.++. .|+.++.|+.. ++.++. ..|.+. .+|+..+|+.||+|+-.-+
T Consensus 23 ~~~~~~~~~~~~~HR~VLAa~S~YFraMF~~-~~~Es~-~~v~~~~~~v~~~~l~~lldy~YTg~--------------- 85 (480)
T PHA02790 23 KTIIEAIGGNIIVNSTILKKLSPYFRTHLRQ-KYTKNK-DPVTRVCLDLDIHSLTSIVIYSYTGK--------------- 85 (480)
T ss_pred ceEEEEcCcEEeeehhhhhhcCHHHHHHhcC-Cccccc-cceEEEecCcCHHHHHHHHHhheeee---------------
Confidence 3445556889999999954 58999999764 333322 234331 2699999999999974322
Q ss_pred hccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHh
Q 016888 96 FIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132 (381)
Q Consensus 96 FLkiD~~~LfeLI~AAnYLdIk~LldL~ck~VA~~Ik 132 (381)
+.++.+.+.+|+.||++|+|+.+++.||+.+...|.
T Consensus 86 -l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~ 121 (480)
T PHA02790 86 -VYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFR 121 (480)
T ss_pred -EEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 124455688888888888888888888887765443
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.06 E-value=0.015 Score=62.36 Aligned_cols=95 Identities=26% Similarity=0.331 Sum_probs=75.1
Q ss_pred ccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCcccchhhhh
Q 016888 16 SYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDE 94 (381)
Q Consensus 16 ~~IkL~SsDG~iFeVs~eaA~-qS~tIr~mL~d~g~~~~e~~~IPLP~nVss~iLkkIIEYCehHk~~~~s~~ei~eWD~ 94 (381)
..+.|.-.+ +.|.+.+.++. .|+.++.|+.. +..+.....|.|. .|++.+|..+++|+-....
T Consensus 37 cDv~L~v~~-~~~~aHR~VLAa~S~YFraMFt~-~l~e~~~~~i~l~-~v~~~~l~~ll~y~Yt~~i------------- 100 (571)
T KOG4441|consen 37 CDVTLLVGD-REFPAHRVVLAACSPYFRAMFTS-GLKESKQKEINLE-GVDPETLELLLDYAYTGKL------------- 100 (571)
T ss_pred ceEEEEECC-eeechHHHHHHhccHHHHHHhcC-CcccccceEEEEe-cCCHHHHHHHHHHhhcceE-------------
Confidence 346666555 88999888876 58999999764 3334456778997 6999999999999876642
Q ss_pred hhccCChHHHHHHHhhcccCCCchHHHHHHHHHHH
Q 016888 95 KFIRMDTKRLCELTSAADSLQLKPLVDLTSRALAR 129 (381)
Q Consensus 95 eFLkiD~~~LfeLI~AAnYLdIk~LldL~ck~VA~ 129 (381)
.++.+.+-+|+.||.+|+|+.+++.||..+..
T Consensus 101 ---~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~ 132 (571)
T KOG4441|consen 101 ---EISEDNVQELLEAASLLQIPEVVDACCEFLES 132 (571)
T ss_pred ---EechHhHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35677888999999999999999999988764
No 13
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=88.33 E-value=2.2 Score=41.55 Aligned_cols=102 Identities=24% Similarity=0.268 Sum_probs=75.1
Q ss_pred ccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCC-CCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCcccchhhh
Q 016888 16 SYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGM-GSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFD 93 (381)
Q Consensus 16 ~~IkL~SsDG~iFeVs~eaA~-qS~tIr~mL~d~g~-~~~e~~~IPLP~nVss~iLkkIIEYCehHk~~~~s~~ei~eWD 93 (381)
..|+| ---|.+|.-+...+. +.+.++.|+..... ..+....|=+ .-+++-+..|+.|++--... +|+
T Consensus 5 ~~vkL-nvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI--DRSpKHF~~ILNfmRdGdv~------LPe-- 73 (230)
T KOG2716|consen 5 ETVKL-NVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI--DRSPKHFDTILNFMRDGDVD------LPE-- 73 (230)
T ss_pred ceEEE-ecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe--cCChhHHHHHHHhhhccccc------Ccc--
Confidence 34453 345789998888876 46888888764421 2223345666 58999999999999843321 232
Q ss_pred hhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCC
Q 016888 94 EKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGK 134 (381)
Q Consensus 94 ~eFLkiD~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGK 134 (381)
+...|-+|+.-|.|..+.+|+++|..+++..+.+.
T Consensus 74 ------~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~ 108 (230)
T KOG2716|consen 74 ------SEKELKELLREAEFYLLDGLVELCQSAIARLIRGY 108 (230)
T ss_pred ------chHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCc
Confidence 46779999999999999999999999999987775
No 14
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=81.90 E-value=4 Score=43.23 Aligned_cols=147 Identities=14% Similarity=0.195 Sum_probs=96.3
Q ss_pred cEEEEeCCCCEEEecHHHH-HHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCC--CC--------
Q 016888 17 YIWLQTADGSIQQVEQEVA-MFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPG--SS-------- 85 (381)
Q Consensus 17 ~IkL~SsDG~iFeVs~eaA-~qS~tIr~mL~d~g~~~~e~~~IPLP~nVss~iLkkIIEYCehHk~~~--~s-------- 85 (381)
.|+++-.| ..|...+-++ ..|..++.++- .|+.++....|||. .-++..++.++.|+-.-+..- ..
T Consensus 46 DVtfvve~-~rfpAHRvILAaRs~yFRAlLY-gGm~Es~q~~ipLq-~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~L 122 (620)
T KOG4350|consen 46 DVTFVVED-TRFPAHRVILAARSSYFRALLY-GGMQESHQQLIPLQ-ETNSEAFRALLRYIYTGKIDLAGVEEDILLDYL 122 (620)
T ss_pred ceEEEEec-cccchhhhhHHHHHHHHHHHHh-hhhhhhhhcccccc-cccHHHHHHHHHHHhhcceecccchHHHHHHHH
Confidence 46666666 6676666554 45899998654 45555556789996 577999999999987655321 00
Q ss_pred -----------cccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhh
Q 016888 86 -----------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEK 154 (381)
Q Consensus 86 -----------~~ei~eWD~eFLkiD~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~nD~TpEEE 154 (381)
...++++-.+.+ ..+.+|-++.||.+.+++.|.++||..+ .+.+.++-.--+.. -++.+-.
T Consensus 123 slAh~Ygf~~Le~aiSeYl~~iL--~~~NvCmifdaA~ly~l~~Lt~~C~mfm-----DrnA~~lL~~~sFn-~LSk~sL 194 (620)
T KOG4350|consen 123 SLAHRYGFIQLETAISEYLKEIL--KNENVCMIFDAAYLYQLTDLTDYCMMFM-----DRNADQLLEDPSFN-RLSKDSL 194 (620)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHH--cccceeeeeeHHHHhcchHHHHHHHHHH-----hcCHHhhhcCcchh-hhhHHHH
Confidence 112344444443 5556888999999999999999999665 67777774422211 2444544
Q ss_pred hccc-ccCCCchhHHHHHHHH
Q 016888 155 LEPL-KNTTDDPRIRLLNRLY 174 (381)
Q Consensus 155 eEi~-k~~~~dp~~~~ln~~y 174 (381)
++++ ++-++.|-+..++-+.
T Consensus 195 ~e~l~RDsFfApE~~IFlAv~ 215 (620)
T KOG4350|consen 195 KELLARDSFFAPELKIFLAVR 215 (620)
T ss_pred HHHHhhhcccchHHHHHHHHH
Confidence 4444 4467788887777653
No 15
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.13 E-value=1.6 Score=41.45 Aligned_cols=38 Identities=32% Similarity=0.556 Sum_probs=30.8
Q ss_pred Hhhccc--CCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 016888 108 TSAADS--LQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (381)
Q Consensus 108 I~AAnY--LdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~nD~T 150 (381)
..|||. =+|--|.++||+.. |.-+.+||+.||||+||.
T Consensus 161 ~eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d 200 (203)
T KOG3433|consen 161 AEAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD 200 (203)
T ss_pred HHHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence 345553 37888899998876 999999999999999974
No 16
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=79.81 E-value=1.4 Score=41.77 Aligned_cols=31 Identities=32% Similarity=0.617 Sum_probs=26.6
Q ss_pred CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 016888 115 QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (381)
Q Consensus 115 dIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~nD~T 150 (381)
+|.-|.++.|+.. |.-++|||+.||||+||.
T Consensus 174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld 204 (209)
T COG5124 174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLD 204 (209)
T ss_pred hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchh
Confidence 6777888888766 889999999999999874
No 17
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=70.43 E-value=5.3 Score=45.61 Aligned_cols=115 Identities=22% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCCCCccEEEEeCCCCEEEecHHHHH-HcHHHHHHHhhcCCCCCCCccc-ccCCCCCHHHHHHHHHHHHhcCCCCCCcc
Q 016888 10 KPEMMKSYIWLQTADGSIQQVEQEVAM-FCPLICQEVIQKGMGSSKNYAI-SLPQRVNPAMLSLILDYCRFHQVPGSSNK 87 (381)
Q Consensus 10 kPe~~s~~IkL~SsDG~iFeVs~eaA~-qS~tIr~mL~d~g~~~~e~~~I-PLP~nVss~iLkkIIEYCehHk~~~~s~~ 87 (381)
+||.+-..|++ .||.+|.....++. .+.++..|+.-.-+..+ .... -.| ++.+.|+-|++|+.-.-
T Consensus 707 h~e~~d~~i~~--KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~s-S~t~~~~p--~~~e~m~ivLdylYs~d------- 774 (1267)
T KOG0783|consen 707 HEETMDTVIKL--KDGKVLKAHKCFLSARLEYFSSMFQFVWMESS-SITVNLSP--LTVEHMSIVLDYLYSDD------- 774 (1267)
T ss_pred CccceeEEEEe--cCCcCcccceeEeeeHHHHHHHHHHHHHhhhc-cceeecCc--chHHHHHHHHHHHHccc-------
Confidence 35554444555 49998877655442 24455545443333221 1222 233 77999999999975321
Q ss_pred cchhhhhhhcc--CChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHh
Q 016888 88 ERKSFDEKFIR--MDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRE 141 (381)
Q Consensus 88 ei~eWD~eFLk--iD~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe 141 (381)
...|++ -..+-+|+++..|+-|=|..|-++|-+.+-+.+.=|+..++-+
T Consensus 775 -----~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~lle 825 (1267)
T KOG0783|consen 775 -----KVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLE 825 (1267)
T ss_pred -----hHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHH
Confidence 122332 2455699999999999999999999999988888887665543
No 18
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=66.70 E-value=9.6 Score=40.30 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=75.1
Q ss_pred CCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCc----ccccCCCCCHHHHHHHHHHHHhcCCCCCCcccchhhhhhhccC
Q 016888 24 DGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNY----AISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRM 99 (381)
Q Consensus 24 DG~iFeVs~eaA~qS~tIr~mL~d~g~~~~e~~----~IPLP~nVss~iLkkIIEYCehHk~~~~s~~ei~eWD~eFLki 99 (381)
=|....+..--+.||+.+..|....--.+ ... .|+=| +|+...|.-++-=+-+.- +.+
T Consensus 77 lg~eWrlHk~yL~QS~yf~smf~Gtw~es-~~~iIqleI~Dp-~Id~~al~~a~gsLY~dE----------------veI 138 (488)
T KOG4682|consen 77 LGFEWRLHKPYLFQSEYFKSMFSGTWKES-SMNIIQLEIPDP-NIDVVALQVAFGSLYRDE----------------VEI 138 (488)
T ss_pred ccceeeeeeeeeeccHHHHHHhccccChh-hCceEEEEcCCC-cccHHHHHHHHhhhhhhh----------------eec
Confidence 36777777777888888888765332211 111 35555 688777776665432221 246
Q ss_pred ChHHHHHHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCChHhhhc
Q 016888 100 DTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLTEEEKLE 156 (381)
Q Consensus 100 D~~~LfeLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~nD~TpEEEeE 156 (381)
+.+.+..++.||.+|..++|++-|..++-. .-+|+-+..++...+-+..|.-.+
T Consensus 139 ~l~dv~gvlAaA~~lqldgl~qrC~evMie---~lspkta~~yYea~ckYgle~vk~ 192 (488)
T KOG4682|consen 139 KLSDVVGVLAAACLLQLDGLIQRCGEVMIE---TLSPKTACGYYEAACKYGLESVKK 192 (488)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---hcChhhhhHhhhhhhhhhhHHHHH
Confidence 888999999999999999999999877644 445556667777666665554444
No 19
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=64.94 E-value=3.1 Score=33.47 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=52.8
Q ss_pred CCCEEEecHHHHHHc--HHHHHHHhhc--CCCCCCCcccccCCCCCHHHHHHHHHHHHhc-CCCCCCcccchhhhhhhcc
Q 016888 24 DGSIQQVEQEVAMFC--PLICQEVIQK--GMGSSKNYAISLPQRVNPAMLSLILDYCRFH-QVPGSSNKERKSFDEKFIR 98 (381)
Q Consensus 24 DG~iFeVs~eaA~qS--~tIr~mL~d~--g~~~~e~~~IPLP~nVss~iLkkIIEYCehH-k~~~~s~~ei~eWD~eFLk 98 (381)
-|+.|.++...+..- ..+..++... .........+=+ .-++..++.|+.|++.. .-..
T Consensus 6 GG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi--DRdp~~F~~IL~ylr~~~~l~~--------------- 68 (94)
T PF02214_consen 6 GGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI--DRDPELFEYILNYLRTGGKLPI--------------- 68 (94)
T ss_dssp TTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE--SS-HHHHHHHHHHHHHTSSB-----------------
T ss_pred CCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe--ccChhhhhHHHHHHhhcCccCC---------------
Confidence 489999999998742 4555555532 111123445555 58999999999999985 2111
Q ss_pred CChHHHHHHHhhcccCCCchH-HHHH
Q 016888 99 MDTKRLCELTSAADSLQLKPL-VDLT 123 (381)
Q Consensus 99 iD~~~LfeLI~AAnYLdIk~L-ldL~ 123 (381)
.+...+..|...|.|.+|..| ++.|
T Consensus 69 ~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 69 PDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred CCchhHHHHHHHHHHcCCCccccCCC
Confidence 123456788899999999998 6544
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=51.47 E-value=8.4 Score=44.31 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=4.8
Q ss_pred HHHHhhh
Q 016888 203 DDLLQFI 209 (381)
Q Consensus 203 d~ll~fi 209 (381)
++.++|+
T Consensus 882 k~~~~~~ 888 (1018)
T KOG2002|consen 882 KEILKLP 888 (1018)
T ss_pred HHHHhcc
Confidence 5667777
No 21
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=51.41 E-value=25 Score=35.88 Aligned_cols=91 Identities=8% Similarity=0.092 Sum_probs=61.7
Q ss_pred CCEEEecHHHHHH-cHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCcccchhhhhhhccCChHH
Q 016888 25 GSIQQVEQEVAMF-CPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKR 103 (381)
Q Consensus 25 G~iFeVs~eaA~q-S~tIr~mL~d~g~~~~e~~~IPLP~nVss~iLkkIIEYCehHk~~~~s~~ei~eWD~eFLkiD~~~ 103 (381)
-+.|..+...+.. .++++..+...-.+....++|+|.+.=+-.|++=+++|++.. + + .++.+.
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~---~------p-------~l~~~N 76 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGE---P------P-------SLTPSN 76 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcC---C------C-------cCCcCc
Confidence 3678888888765 688888764310011134556664345677788888887761 1 1 245666
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHHHH
Q 016888 104 LCELTSAADSLQLKPLVDLTSRALARII 131 (381)
Q Consensus 104 LfeLI~AAnYLdIk~LldL~ck~VA~~I 131 (381)
...|+.-|+||+|++|++.|-.++...+
T Consensus 77 vvsIliSS~FL~M~~Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMESLVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHHHHHHHHHHHHHhH
Confidence 7888999999999999999998885443
No 22
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.98 E-value=11 Score=41.38 Aligned_cols=40 Identities=28% Similarity=0.221 Sum_probs=18.8
Q ss_pred cccccCCCCCCc---CCHHHHHHHhHHHHHHHHHhcCChhHHHH
Q 016888 288 KVDFDDVDIDDE---IDPALKEKLDREVEDFARRLNSDWPERMQ 328 (381)
Q Consensus 288 ~~~~~~~~~~~~---~d~~~~~~~~~~ve~f~~~~~~~~~e~~~ 328 (381)
-+.+.|.+.++. ++-.+-++.-+=+-+| +.||-+-+=+.|
T Consensus 151 ~v~~i~~~~~~~~~~l~r~l~~k~~k~~v~~-~~lnpdtE~k~~ 193 (665)
T KOG2422|consen 151 WVLEIDLKSDPLFTELPRSLGSKSCKLFVDF-KKLNPDTEFKLQ 193 (665)
T ss_pred hHHHHhhhcccccCccchhHHHHHHHHHHhh-hccCCCchhhhh
Confidence 355655555443 3323333333333333 567776655443
No 23
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=47.87 E-value=16 Score=34.22 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=31.2
Q ss_pred HHHHHhhcccC--CCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCCC
Q 016888 104 LCELTSAADSL--QLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150 (381)
Q Consensus 104 LfeLI~AAnYL--dIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~nD~T 150 (381)
+..+..||+.. +|..|..+|++.. |.+.++|++.||||+||.
T Consensus 144 ~~~~~~~anrwTDNI~~l~~~~~~k~-----~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 144 IKIAKEAANRWTDNIFSLKSYLKKKF-----GMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhc-----CCCHHHHHHHcCCccccC
Confidence 34445566654 6777777777653 999999999999999874
No 24
>PF07928 Vps54: Vps54-like protein; InterPro: IPR012501 This family contains various proteins that are homologues of the yeast Vps54 protein, such as the rat homologue (Q9JMK8 from SWISSPROT), the human homologue (Q86YF7 from SWISSPROT), and the mouse homologue (Q8R3X1 from SWISSPROT). In yeast, Vps54 associates with Vps52 and Vps53 proteins to form a trimolecular complex that is involved in protein transport between Golgi, endosomal, and vacuolar compartments []. All Vps54 homologues contain a coiled coil region (not found in the region featured in this family) and multiple dileucine motifs []. ; GO: 0042147 retrograde transport, endosome to Golgi; PDB: 3N1E_B 3N1B_B.
Probab=46.71 E-value=6.5 Score=35.04 Aligned_cols=121 Identities=21% Similarity=0.319 Sum_probs=12.6
Q ss_pred CCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCcccchhhhhhhccCChHH
Q 016888 24 DGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKERKSFDEKFIRMDTKR 103 (381)
Q Consensus 24 DG~iFeVs~eaA~qS~tIr~mL~d~g~~~~e~~~IPLP~nVss~iLkkIIEYCehHk~~~~s~~ei~eWD~eFLkiD~~~ 103 (381)
||+.|.|...++..-+.|.+.+. ....+| .+.++++.++++|.+.. +..
T Consensus 1 d~e~f~vv~s~l~ll~~l~~Y~~---------~~~~~P-~~a~di~~~l~elLk~f---------------------NSr 49 (135)
T PF07928_consen 1 DNEKFVVVGSALLLLKMLSDYLQ---------LASNFP-SLAPDILSRLLELLKLF---------------------NSR 49 (135)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceecHHHHHHHHHHHHHHHH---------HHHHCc-hhHHHHHHHHHHHHHHH---------------------HHH
Confidence 56667776666665555554322 112355 46667777777665443 445
Q ss_pred HHHHHhhcccCCCchHHHHHHHHHHHHHhCC-----CHHHHHhHcCCCCCCChHhhhcccccCCCchhHHHHHHHHHHHH
Q 016888 104 LCELTSAADSLQLKPLVDLTSRALARIIEGK-----TPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKR 178 (381)
Q Consensus 104 LfeLI~AAnYLdIk~LldL~ck~VA~~IkGK-----TpEEIRe~FgI~nD~TpEEEeEi~k~~~~dp~~~~ln~~yak~~ 178 (381)
.++|+..|-....-+|-.++.+.+|-..+.- -.--||.+|.-- .++ -..-++ -.|+.+.+.|..-+
T Consensus 50 ~~qlVLGAGA~~~agLK~IT~KhLALasq~L~~~~~lip~i~~~~~~~--~~~-~~~~~~------~~fd~v~~dy~~H~ 120 (135)
T PF07928_consen 50 CCQLVLGAGAMRSAGLKTITAKHLALASQSLSFIISLIPYIREFFERH--LPS-KQQSLL------REFDKVKRDYQDHQ 120 (135)
T ss_dssp -------------------------------------------------------HHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhccCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCc-ccchHH------HHHHHHHHHHHHHH
Confidence 7788888888888888887777766433321 133444444432 111 011111 14666777777666
Q ss_pred HHHHHH
Q 016888 179 KELKER 184 (381)
Q Consensus 179 ~el~~~ 184 (381)
.|+..+
T Consensus 121 ~eI~~K 126 (135)
T PF07928_consen 121 NEIFSK 126 (135)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 25
>PF14384 DUF4415: Domain of unknown function (DUF4415)
Probab=38.91 E-value=27 Score=27.02 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=23.2
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHh
Q 016888 307 KLDREVEDFARRLNSDWPERMQEILS 332 (381)
Q Consensus 307 ~~~~~ve~f~~~~~~~~~e~~~~~~~ 332 (381)
.||.+|-+|.+..-..|+-||+++|.
T Consensus 34 rld~dVl~~fka~G~gyQtriN~~Lr 59 (62)
T PF14384_consen 34 RLDPDVLEWFKAQGKGYQTRINEALR 59 (62)
T ss_pred EeCHHHHHHHHHHChhHHHHHHHHHH
Confidence 47788999999999999999999885
No 26
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=38.17 E-value=14 Score=41.91 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=21.4
Q ss_pred HHHhHHHHHHHH-HhcCChhHHHHHHHhcC
Q 016888 306 EKLDREVEDFAR-RLNSDWPERMQEILSLG 334 (381)
Q Consensus 306 ~~~~~~ve~f~~-~~~~~~~e~~~~~~~~~ 334 (381)
+.|-+++.+-.| -||..|.+|.++++...
T Consensus 511 ~~ll~~lA~~l~p~l~~~~~~~~~~~~~~~ 540 (803)
T PLN03083 511 GSILKHLADHLRPMLINSLKERRKALFTEN 540 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 366667666554 58999999999887543
No 27
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.66 E-value=25 Score=38.84 Aligned_cols=9 Identities=56% Similarity=0.556 Sum_probs=4.0
Q ss_pred hhhcccCCh
Q 016888 194 EERVDERSV 202 (381)
Q Consensus 194 ~~~~d~~s~ 202 (381)
++..|+++|
T Consensus 67 ~ee~de~~~ 75 (665)
T KOG2422|consen 67 AEERDEPSV 75 (665)
T ss_pred hhcccCccc
Confidence 334455544
No 28
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=29.59 E-value=29 Score=31.58 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=27.4
Q ss_pred HHHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCC
Q 016888 106 ELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDL 149 (381)
Q Consensus 106 eLI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~nD~ 149 (381)
.|+.||..|++.. .++.|-..+.+++.|||++++
T Consensus 130 ~l~LaA~~~Glgs----------~~~~g~~~~~v~~~l~ip~~~ 163 (195)
T PRK05365 130 YLILAARALGLDA----------GPMSGFDAAAVDAEFFAGTTW 163 (195)
T ss_pred HHHHHHHHcCCcc----------CCccccCHHHHHHHhCCCCCe
Confidence 3888998888876 245677889999999998654
No 29
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=28.26 E-value=73 Score=23.79 Aligned_cols=39 Identities=36% Similarity=0.465 Sum_probs=25.0
Q ss_pred hCCCHHHHHhHcCCCCCCChHhhhcccccCCCchhHHHHHHHHHHHHHHHHHH
Q 016888 132 EGKTPEEIREIFHLPDDLTEEEKLEPLKNTTDDPRIRLLNRLYAKKRKELKER 184 (381)
Q Consensus 132 kGKTpEEIRe~FgI~nD~TpEEEeEi~k~~~~dp~~~~ln~~yak~~~el~~~ 184 (381)
-|-|.+||++++.+.++ .++.......+.+.+++++.++
T Consensus 13 lGfsL~eI~~~l~l~~~--------------~~~~~~~~~~~l~~~~~~i~~~ 51 (65)
T PF09278_consen 13 LGFSLEEIRELLELYDQ--------------GDPPCADRRALLEEKLEEIEEQ 51 (65)
T ss_dssp TT--HHHHHHHHHHCCS--------------HCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHhccCC--------------CCCCHHHHHHHHHHHHHHHHHH
Confidence 39999999999988654 1233344456666777777766
No 30
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=26.97 E-value=1.6e+02 Score=31.45 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=74.7
Q ss_pred EeCCCCEEEecHHHHHHcHHHHHHHhhcCCCCCCCcc---cccCCCCCHHHHHHHHHHHHhcCCCCC----C--------
Q 016888 21 QTADGSIQQVEQEVAMFCPLICQEVIQKGMGSSKNYA---ISLPQRVNPAMLSLILDYCRFHQVPGS----S-------- 85 (381)
Q Consensus 21 ~SsDG~iFeVs~eaA~qS~tIr~mL~d~g~~~~e~~~---IPLP~nVss~iLkkIIEYCehHk~~~~----s-------- 85 (381)
++-......+...++..+.+...|+...-..++.+.. ..|| +....+.+.++.|+-.|+.+-+ +
T Consensus 296 ql~~~~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp-~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~ 374 (516)
T KOG0511|consen 296 QLPEEDRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLP-SLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADK 374 (516)
T ss_pred cccccccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccc-hHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhH
Confidence 3344445788888888888999887655433222433 4588 7889999999999988887531 0
Q ss_pred -------------cccchhhhhhhccCChHHHHHHHhhcccCCCchHHHHHHHHHHHHHh
Q 016888 86 -------------NKERKSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIE 132 (381)
Q Consensus 86 -------------~~ei~eWD~eFLkiD~~~LfeLI~AAnYLdIk~LldL~ck~VA~~Ik 132 (381)
...+..| .+| +|.-.+++++.-|.-+....|=..+...+|+.+.
T Consensus 375 lal~~dr~Lkt~as~~itq~-~e~--id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~ 431 (516)
T KOG0511|consen 375 LALADDRLLKTAASAEITQW-LEL--IDMYGVLDILEYCWDLVACRLEQFAETHEARHLL 431 (516)
T ss_pred hhhhhhhhhhhhhhHHHHHH-HHH--HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 1123445 223 3445588888888888888888888888888654
No 31
>cd02148 Nitroreductase_5 Nitroreductase-like family 5. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=25.97 E-value=34 Score=30.84 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=27.0
Q ss_pred HHhhcccCCCchHHHHHHHHHHHHHhCCCHHHHHhHcCCCCCC
Q 016888 107 LTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDL 149 (381)
Q Consensus 107 LI~AAnYLdIk~LldL~ck~VA~~IkGKTpEEIRe~FgI~nD~ 149 (381)
|+.||..|++.. .+|.|-..+++++.|||++++
T Consensus 124 l~LaA~~lGlgs----------~~~~g~d~~~~~~~L~lp~~~ 156 (185)
T cd02148 124 FILAARALGLDA----------GPMSGFDAAAVDAEFFADTRW 156 (185)
T ss_pred HHHHHHHcCCCc----------CCCcccCHHHHHHHhCCCCCe
Confidence 888888888875 355677889999999999765
No 32
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=25.83 E-value=56 Score=29.12 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=16.6
Q ss_pred HHhCCCHHHHHhHcCCCCCCChHhhhcccc
Q 016888 130 IIEGKTPEEIREIFHLPDDLTEEEKLEPLK 159 (381)
Q Consensus 130 ~IkGKTpEEIRe~FgI~nD~TpEEEeEi~k 159 (381)
...|.|.+|-++++|++...++||-.+.-+
T Consensus 51 ~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~ 80 (127)
T PF03656_consen 51 NSKGMTLDEARQILNVKEELSREEIQKRYK 80 (127)
T ss_dssp ------HHHHHHHHT--G--SHHHHHHHHH
T ss_pred hcCCCCHHHHHHHcCCCCccCHHHHHHHHH
Confidence 446899999999999999888888766443
No 33
>PF05553 DUF761: Cotton fibre expressed protein; InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=24.41 E-value=64 Score=23.22 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=19.7
Q ss_pred HHHhHHHHHHHHHhcCChhHHHHHHHh
Q 016888 306 EKLDREVEDFARRLNSDWPERMQEILS 332 (381)
Q Consensus 306 ~~~~~~ve~f~~~~~~~~~e~~~~~~~ 332 (381)
+.||+-+|+|.++.+-.| |||..-|
T Consensus 3 ~evd~rAe~FI~~f~~ql--rlqr~~S 27 (38)
T PF05553_consen 3 DEVDRRAEEFIAKFREQL--RLQRQES 27 (38)
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 578999999999999888 6664433
No 34
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=23.41 E-value=27 Score=32.18 Aligned_cols=8 Identities=38% Similarity=0.227 Sum_probs=0.0
Q ss_pred ChHhhhcc
Q 016888 150 TEEEKLEP 157 (381)
Q Consensus 150 TpEEEeEi 157 (381)
|+||.+.+
T Consensus 2 ~eEEl~rr 9 (154)
T PF06375_consen 2 DEEELERR 9 (154)
T ss_dssp --------
T ss_pred CHHHHHHH
Confidence 44444443
No 35
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=21.68 E-value=51 Score=28.07 Aligned_cols=13 Identities=46% Similarity=0.907 Sum_probs=10.7
Q ss_pred CChhHHHHHHHhc
Q 016888 321 SDWPERMQEILSL 333 (381)
Q Consensus 321 ~~~~e~~~~~~~~ 333 (381)
|||.||+-.+|+.
T Consensus 23 SDWaERL~gvla~ 35 (92)
T PF12112_consen 23 SDWAERLCGVLAS 35 (92)
T ss_dssp TTHHHHHHHTT-E
T ss_pred ccHHHHHHHHHHc
Confidence 8999999988775
No 36
>PF01886 DUF61: Protein of unknown function DUF61; InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=21.51 E-value=80 Score=28.26 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=31.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHhcCCCCccceeeccCCCcccccc
Q 016888 308 LDREVEDFARRLNSDWPERMQEILSLGHDMKPLRHSTKGNGTIRRYA 354 (381)
Q Consensus 308 ~~~~ve~f~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (381)
|||=++...+++|+.||.+=.-+-.+-+|-+| +.+..||+.+++-
T Consensus 1 ~dr~~~~ei~~iN~~lP~~rktL~eLL~ee~P--~i~lrdG~~h~f~ 45 (132)
T PF01886_consen 1 IDRILEKEIRRINKHLPRERKTLKELLEEEKP--SIILRDGSRHRFD 45 (132)
T ss_pred ChhHHHHHHHHHHhhchHhhhhHHHHHhCCCC--eEEecCCCEEEEc
Confidence 56778888999999998765545555556565 3455578776653
No 37
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=20.59 E-value=1.1e+02 Score=30.42 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=59.6
Q ss_pred CccEEEEeCCCCEEEec--HHHHHH-cHHHHHHHhhcCCCC--CCCcccccCCCCCHHHHHHHHHHHHhcCCCCCCcccc
Q 016888 15 KSYIWLQTADGSIQQVE--QEVAMF-CPLICQEVIQKGMGS--SKNYAISLPQRVNPAMLSLILDYCRFHQVPGSSNKER 89 (381)
Q Consensus 15 s~~IkL~SsDG~iFeVs--~eaA~q-S~tIr~mL~d~g~~~--~e~~~IPLP~nVss~iLkkIIEYCehHk~~~~s~~ei 89 (381)
+++|+|- -.|+.|.-. .-+.+. -.++..|+.+.|-.. ++...+-| .-++.-++-|+.|+++-+-+
T Consensus 8 ~~~vrln-igGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI--DRsp~yFepIlNyLr~Gq~~------- 77 (302)
T KOG1665|consen 8 SSMVRLN-IGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI--DRSPKYFEPILNYLRDGQIP------- 77 (302)
T ss_pred hhhheee-cCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE--ccCchhhHHHHHHHhcCcee-------
Confidence 4455554 346666543 333333 256677887776432 23445556 58899999999999886532
Q ss_pred hhhhhhhccCChHHHHHHHhhcccCCCchHHHHH
Q 016888 90 KSFDEKFIRMDTKRLCELTSAADSLQLKPLVDLT 123 (381)
Q Consensus 90 ~eWD~eFLkiD~~~LfeLI~AAnYLdIk~LldL~ 123 (381)
......++.++.+|.|.+|-+|++-.
T Consensus 78 --------~~s~i~~lgvLeeArff~i~sL~~hl 103 (302)
T KOG1665|consen 78 --------SLSDIDCLGVLEEARFFQILSLKDHL 103 (302)
T ss_pred --------ecCCccHHHHHHHhhHHhhHhHHhHH
Confidence 12334588999999999999998743
No 38
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=20.40 E-value=72 Score=22.98 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=20.2
Q ss_pred HHHHHHhHHHHHHHHHhcCChhH
Q 016888 303 ALKEKLDREVEDFARRLNSDWPE 325 (381)
Q Consensus 303 ~~~~~~~~~ve~f~~~~~~~~~e 325 (381)
-++.++++|++.|..+-|..|.|
T Consensus 30 ~~~~~~~~em~~fk~~s~d~W~~ 52 (53)
T PF01484_consen 30 NFQSELDDEMEEFKEISDDAWNE 52 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999954
Done!