Query 016889
Match_columns 381
No_of_seqs 164 out of 899
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 05:28:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 97.7 0.00038 1.3E-08 53.0 10.0 38 187-230 17-54 (99)
2 2dnz_A Probable RNA-binding pr 97.6 0.00079 2.7E-08 50.4 11.6 82 187-350 3-86 (95)
3 4a8x_A RNA-binding protein wit 97.5 0.00048 1.6E-08 50.8 8.9 37 187-229 2-38 (88)
4 3s8s_A Histone-lysine N-methyl 97.5 0.00064 2.2E-08 52.8 9.9 80 187-348 4-85 (110)
5 2jrs_A RNA-binding protein 39; 97.5 0.0014 4.6E-08 50.7 11.4 84 186-351 23-108 (108)
6 2dgp_A Bruno-like 4, RNA bindi 97.4 0.0018 6.3E-08 49.5 11.5 82 186-349 10-96 (106)
7 1fxl_A Paraneoplastic encephal 97.4 0.0019 6.4E-08 53.3 12.4 102 188-371 1-110 (167)
8 1x5s_A Cold-inducible RNA-bind 97.4 0.0013 4.3E-08 50.0 10.4 37 187-229 10-46 (102)
9 2lkz_A RNA-binding protein 5; 97.4 0.00043 1.5E-08 52.4 7.2 39 187-229 7-45 (95)
10 2dnh_A Bruno-like 5, RNA bindi 97.4 0.0025 8.5E-08 48.6 11.8 37 187-229 13-49 (105)
11 2lxi_A RNA-binding protein 10; 97.4 0.00024 8E-09 53.3 5.4 34 189-227 1-34 (91)
12 1whw_A Hypothetical protein ri 97.4 0.0016 5.6E-08 49.1 10.3 82 187-350 6-89 (99)
13 3p5t_L Cleavage and polyadenyl 97.4 0.00072 2.5E-08 50.3 8.1 81 190-350 2-84 (90)
14 2do4_A Squamous cell carcinoma 97.4 0.0021 7.3E-08 48.6 10.8 37 187-229 15-51 (100)
15 3bs9_A Nucleolysin TIA-1 isofo 97.3 0.0014 4.8E-08 48.1 9.3 38 187-230 4-41 (87)
16 2x1f_A MRNA 3'-END-processing 97.3 0.0017 5.7E-08 48.8 9.8 79 189-349 2-82 (96)
17 2dgs_A DAZ-associated protein 97.3 0.0031 1.1E-07 47.5 11.4 37 187-229 8-44 (99)
18 2dgv_A HnRNP M, heterogeneous 97.3 0.0022 7.7E-08 47.6 10.4 37 187-229 6-42 (92)
19 2cph_A RNA binding motif prote 97.3 0.0028 9.7E-08 48.5 11.2 84 186-350 12-98 (107)
20 1x5u_A Splicing factor 3B subu 97.3 0.0024 8.2E-08 48.7 10.7 82 186-349 12-95 (105)
21 3mdf_A Peptidyl-prolyl CIS-tra 97.3 0.0012 4.1E-08 48.2 8.6 37 187-229 5-41 (85)
22 3md1_A Nuclear and cytoplasmic 97.3 0.0023 7.8E-08 46.4 10.0 35 190-230 2-36 (83)
23 2fy1_A RNA-binding motif prote 97.3 0.0024 8.1E-08 50.0 10.6 37 187-229 5-41 (116)
24 4f25_A Polyadenylate-binding p 97.3 0.0022 7.7E-08 50.0 10.1 36 188-229 4-39 (115)
25 2cpz_A CUG triplet repeat RNA- 97.2 0.0028 9.5E-08 49.3 10.6 37 187-229 23-59 (115)
26 1b7f_A Protein (SXL-lethal pro 97.2 0.0028 9.7E-08 52.4 11.2 101 188-370 2-110 (168)
27 1x5t_A Splicing factor 3B subu 97.2 0.0015 5E-08 49.0 8.4 36 187-228 3-39 (96)
28 2d9p_A Polyadenylate-binding p 97.2 0.0031 1.1E-07 47.9 10.3 38 187-230 13-50 (103)
29 1p27_B RNA-binding protein 8A; 97.2 0.0043 1.5E-07 47.4 11.1 39 186-230 20-58 (106)
30 1s79_A Lupus LA protein; RRM, 97.2 0.0015 5.1E-08 50.1 8.3 37 187-229 9-45 (103)
31 2e5h_A Zinc finger CCHC-type a 97.2 0.0021 7.1E-08 48.0 8.9 38 186-229 13-50 (94)
32 2ywk_A Putative RNA-binding pr 97.2 0.002 6.9E-08 48.1 8.8 38 187-230 14-51 (95)
33 2cqi_A Nucleolysin TIAR; RNA r 97.2 0.0062 2.1E-07 46.2 11.7 37 187-229 13-49 (103)
34 2cq3_A RNA-binding protein 9; 97.2 0.0059 2E-07 46.3 11.4 38 186-229 12-49 (103)
35 2cpf_A RNA binding motif prote 97.2 0.0028 9.6E-08 47.7 9.5 38 187-230 3-40 (98)
36 2cqc_A Arginine/serine-rich sp 97.2 0.0031 1E-07 47.1 9.6 37 187-229 13-49 (95)
37 3nmr_A Cugbp ELAV-like family 97.1 0.0057 1.9E-07 50.8 12.2 104 188-371 2-117 (175)
38 2div_A TRNA selenocysteine ass 97.1 0.0051 1.7E-07 46.3 10.8 39 186-230 6-45 (99)
39 2dhg_A TRNA selenocysteine ass 97.1 0.0051 1.8E-07 46.7 10.9 39 187-230 7-45 (104)
40 2dgo_A Cytotoxic granule-assoc 97.1 0.0044 1.5E-07 48.1 10.6 38 187-230 13-50 (115)
41 2cqg_A TDP-43, TAR DNA-binding 97.1 0.0023 8E-08 48.6 8.8 38 187-230 13-50 (103)
42 1x4h_A RNA-binding protein 28; 97.1 0.0057 1.9E-07 47.1 10.9 37 187-229 13-49 (111)
43 2dnm_A SRP46 splicing factor; 97.1 0.0033 1.1E-07 47.8 9.4 37 187-229 11-47 (103)
44 1p1t_A Cleavage stimulation fa 97.1 0.0032 1.1E-07 47.9 9.3 81 187-349 6-88 (104)
45 3ns6_A Eukaryotic translation 97.1 0.0015 5.3E-08 49.6 7.2 37 188-230 5-47 (100)
46 1h2v_Z 20 kDa nuclear CAP bind 97.1 0.0037 1.3E-07 51.5 10.0 38 187-230 37-74 (156)
47 2dha_A FLJ20171 protein; RRM d 97.1 0.0014 4.8E-08 52.0 7.1 40 187-230 21-62 (123)
48 2cq0_A Eukaryotic translation 97.0 0.0028 9.7E-08 48.2 8.5 38 186-229 12-49 (103)
49 2kt5_A RNA and export factor-b 97.0 0.0049 1.7E-07 48.6 10.1 37 187-229 33-69 (124)
50 3ulh_A THO complex subunit 4; 97.0 0.004 1.4E-07 47.6 9.3 39 186-230 26-64 (107)
51 1wi8_A EIF-4B, eukaryotic tran 97.0 0.0039 1.3E-07 47.5 9.2 37 186-229 12-48 (104)
52 3ex7_B RNA-binding protein 8A; 97.0 0.0054 1.8E-07 48.5 10.3 38 186-229 19-56 (126)
53 3md3_A Nuclear and cytoplasmic 97.0 0.0073 2.5E-07 49.6 11.5 98 190-370 1-108 (166)
54 2cqb_A Peptidyl-prolyl CIS-tra 97.0 0.0023 7.9E-08 48.6 7.6 36 187-228 10-45 (102)
55 1x4c_A Splicing factor, argini 97.0 0.004 1.4E-07 47.9 8.9 36 187-228 13-48 (108)
56 3lqv_A PRE-mRNA branch site pr 97.0 0.0055 1.9E-07 47.5 9.8 95 187-368 6-102 (115)
57 2dnp_A RNA-binding protein 14; 97.0 0.0094 3.2E-07 44.0 10.6 37 186-228 6-42 (90)
58 2a3j_A U1 small nuclear ribonu 97.0 0.0042 1.4E-07 49.5 9.1 43 313-355 72-116 (127)
59 2la6_A RNA-binding protein FUS 97.0 0.007 2.4E-07 45.6 10.0 33 186-224 10-42 (99)
60 2kxn_B Transformer-2 protein h 97.0 0.0047 1.6E-07 49.3 9.5 37 187-229 44-80 (129)
61 1x4a_A Splicing factor, argini 96.9 0.0073 2.5E-07 46.3 10.3 35 187-227 20-54 (109)
62 1oo0_B CG8781-PA, drosophila Y 96.9 0.0052 1.8E-07 47.3 9.4 38 186-229 23-60 (110)
63 1x4e_A RNA binding motif, sing 96.9 0.003 1E-07 46.1 7.6 37 187-229 3-39 (85)
64 2dnq_A RNA-binding protein 4B; 96.9 0.012 4.2E-07 43.3 11.1 35 187-227 6-40 (90)
65 4f02_A Polyadenylate-binding p 96.9 0.0094 3.2E-07 51.7 12.0 103 187-371 13-125 (213)
66 2do0_A HnRNP M, heterogeneous 96.9 0.0065 2.2E-07 47.0 9.9 37 187-229 13-49 (114)
67 1x5o_A RNA binding motif, sing 96.9 0.0069 2.4E-07 46.9 10.0 38 187-230 23-60 (114)
68 2ku7_A MLL1 PHD3-CYP33 RRM chi 96.8 0.0062 2.1E-07 48.9 9.4 37 187-229 61-97 (140)
69 2dng_A Eukaryotic translation 96.8 0.0079 2.7E-07 45.6 9.5 38 186-230 12-49 (103)
70 1u6f_A Tcubp1, RNA-binding pro 96.8 0.0099 3.4E-07 47.8 10.5 37 187-229 40-76 (139)
71 2qfj_A FBP-interacting repress 96.8 0.016 5.3E-07 50.0 12.5 101 188-370 27-146 (216)
72 2cqp_A RNA-binding protein 12; 96.8 0.0022 7.5E-08 48.3 6.1 40 311-350 55-96 (98)
73 2f3j_A RNA and export factor b 96.8 0.0051 1.7E-07 52.0 9.0 85 187-354 86-172 (177)
74 2cqd_A RNA-binding region cont 96.8 0.0067 2.3E-07 47.1 9.0 38 186-229 14-51 (116)
75 1wg5_A Heterogeneous nuclear r 96.8 0.0045 1.5E-07 47.3 7.7 36 187-228 13-49 (104)
76 1l3k_A Heterogeneous nuclear r 96.8 0.011 3.8E-07 50.1 11.0 103 186-370 10-125 (196)
77 2dgw_A Probable RNA-binding pr 96.8 0.007 2.4E-07 44.7 8.6 37 187-230 8-44 (91)
78 2dgu_A Heterogeneous nuclear r 96.8 0.014 4.9E-07 44.2 10.5 34 187-226 9-42 (103)
79 1why_A Hypothetical protein ri 96.7 0.015 5.3E-07 43.4 10.4 34 187-226 15-48 (97)
80 2cpj_A Non-POU domain-containi 96.7 0.0096 3.3E-07 44.8 9.1 37 314-350 52-90 (99)
81 2ki2_A SS-DNA binding protein 96.7 0.003 1E-07 46.7 6.0 34 190-229 2-35 (90)
82 1nu4_A U1A RNA binding domain; 96.7 0.0084 2.9E-07 44.8 8.5 40 313-352 51-92 (97)
83 2dis_A Unnamed protein product 96.7 0.013 4.5E-07 44.8 9.7 37 187-228 6-42 (109)
84 2rs2_A Musashi-1, RNA-binding 96.7 0.0063 2.1E-07 46.9 7.8 37 187-229 23-59 (109)
85 3beg_B Splicing factor, argini 96.6 0.0094 3.2E-07 46.4 8.8 35 187-227 14-48 (115)
86 2cpe_A RNA-binding protein EWS 96.6 0.011 3.9E-07 45.5 9.3 37 311-347 63-101 (113)
87 2e44_A Insulin-like growth fac 96.6 0.021 7.1E-07 42.5 10.5 33 187-225 13-45 (96)
88 1wf1_A RNA-binding protein RAL 96.6 0.015 5E-07 44.7 9.6 34 187-226 25-59 (110)
89 2dnl_A Cytoplasmic polyadenyla 96.6 0.0048 1.6E-07 48.0 6.6 31 187-223 6-36 (114)
90 1whx_A Hypothetical protein ri 96.6 0.0097 3.3E-07 46.0 8.3 35 187-227 8-42 (111)
91 2ek1_A RNA-binding protein 12; 96.6 0.0034 1.2E-07 46.8 5.5 27 187-217 13-39 (95)
92 2j76_E EIF-4B, EIF4B, eukaryot 96.6 0.0042 1.5E-07 47.0 6.1 36 187-229 17-52 (100)
93 3nmr_A Cugbp ELAV-like family 96.5 0.019 6.5E-07 47.5 10.7 37 187-229 93-129 (175)
94 2krb_A Eukaryotic translation 96.5 0.0067 2.3E-07 43.8 6.8 37 189-227 1-39 (81)
95 2dnn_A RNA-binding protein 12; 96.5 0.0061 2.1E-07 47.2 6.8 35 188-229 15-49 (109)
96 2kn4_A Immunoglobulin G-bindin 96.5 0.013 4.6E-07 48.1 9.2 37 187-229 68-104 (158)
97 1rk8_A CG8781-PA, CG8781-PA pr 96.5 0.017 5.9E-07 48.0 10.0 38 186-229 69-106 (165)
98 1wez_A HnRNP H', FTP-3, hetero 96.5 0.0047 1.6E-07 47.1 5.8 36 187-229 13-48 (102)
99 2jvr_A Nucleolar protein 3; RN 96.5 0.013 4.4E-07 45.5 8.4 34 187-225 26-59 (111)
100 3n9u_C Cleavage and polyadenyl 96.4 0.016 5.4E-07 47.9 9.3 39 188-230 54-92 (156)
101 2lea_A Serine/arginine-rich sp 96.4 0.0074 2.5E-07 48.5 7.2 37 187-229 45-81 (135)
102 2cpy_A RNA-binding protein 12; 96.4 0.0039 1.3E-07 48.5 5.2 37 187-229 13-50 (114)
103 2e5j_A Methenyltetrahydrofolat 96.4 0.033 1.1E-06 41.6 10.3 38 312-349 55-94 (97)
104 2kvi_A Nuclear polyadenylated 96.4 0.02 6.9E-07 42.7 9.0 35 187-227 8-43 (96)
105 2i2y_A Fusion protein consists 96.4 0.03 1E-06 45.6 10.7 36 187-228 71-106 (150)
106 1b7f_A Protein (SXL-lethal pro 96.4 0.024 8.1E-07 46.6 10.3 38 187-230 87-124 (168)
107 1x4f_A Matrin 3; structural ge 96.3 0.014 4.8E-07 45.3 7.9 36 187-228 23-59 (112)
108 2db1_A Heterogeneous nuclear r 96.3 0.0056 1.9E-07 48.0 5.7 39 187-229 15-54 (118)
109 3sde_A Paraspeckle component 1 96.3 0.031 1E-06 50.1 11.3 58 314-371 59-118 (261)
110 2cpi_A CCR4-NOT transcription 96.3 0.0056 1.9E-07 47.3 5.6 38 187-230 13-53 (111)
111 2jvo_A Nucleolar protein 3; nu 96.3 0.025 8.7E-07 43.4 9.3 34 187-226 29-62 (108)
112 1fxl_A Paraneoplastic encephal 96.3 0.037 1.3E-06 45.2 10.9 37 187-229 86-122 (167)
113 2cjk_A Nuclear polyadenylated 96.3 0.0058 2E-07 50.5 5.8 101 189-371 3-109 (167)
114 2voo_A Lupus LA protein; RNA-b 96.2 0.012 4.1E-07 50.4 7.8 35 189-229 109-143 (193)
115 2qfj_A FBP-interacting repress 96.2 0.029 1E-06 48.2 10.4 38 187-230 123-160 (216)
116 2hgl_A HNRPF protein, heteroge 96.2 0.0067 2.3E-07 48.9 5.7 39 187-229 42-81 (136)
117 2fc8_A NCL protein; structure 96.2 0.02 6.9E-07 43.1 8.2 38 312-349 53-92 (102)
118 3smz_A Protein raver-1, ribonu 96.1 0.041 1.4E-06 49.7 11.2 59 313-371 57-117 (284)
119 2adc_A Polypyrimidine tract-bi 96.1 0.065 2.2E-06 46.9 12.1 37 187-229 32-69 (229)
120 2hgm_A HNRPF protein, heteroge 96.1 0.0096 3.3E-07 47.3 5.8 36 187-229 40-77 (126)
121 2pe8_A Splicing factor 45; RRM 96.0 0.043 1.5E-06 41.9 9.2 84 187-348 6-93 (105)
122 3q2s_C Cleavage and polyadenyl 96.0 0.02 6.7E-07 50.5 8.1 39 188-230 67-105 (229)
123 2lmi_A GRSF-1, G-rich sequence 95.9 0.012 4E-07 45.2 5.5 37 187-227 9-46 (107)
124 3md3_A Nuclear and cytoplasmic 95.9 0.037 1.3E-06 45.2 9.0 38 187-230 85-122 (166)
125 1qm9_A Polypyrimidine tract-bi 95.8 0.072 2.5E-06 45.2 10.9 35 188-228 2-37 (198)
126 2wbr_A GW182, gawky, LD47780P; 95.8 0.069 2.3E-06 39.4 9.0 35 187-227 5-39 (89)
127 2fc9_A NCL protein; structure 95.8 0.038 1.3E-06 41.5 8.0 37 311-347 51-89 (101)
128 2cpx_A Hypothetical protein FL 95.8 0.086 2.9E-06 40.5 10.1 37 311-347 65-103 (115)
129 1fj7_A Nucleolin RBD1, protein 95.7 0.023 7.9E-07 42.8 6.5 36 311-347 56-93 (101)
130 2g4b_A Splicing factor U2AF 65 95.7 0.04 1.4E-06 45.4 8.5 38 187-230 92-129 (172)
131 3pgw_S U1-70K; protein-RNA com 95.6 0.048 1.6E-06 52.9 9.6 79 188-348 101-181 (437)
132 2diu_A KIAA0430 protein; struc 95.6 0.02 6.8E-07 42.8 5.3 41 314-354 47-89 (96)
133 3tyt_A Heterogeneous nuclear r 95.6 0.1 3.5E-06 44.9 10.8 36 187-228 2-38 (205)
134 2ghp_A U4/U6 snRNA-associated 95.4 0.064 2.2E-06 48.6 9.6 100 187-372 39-140 (292)
135 1l3k_A Heterogeneous nuclear r 95.4 0.056 1.9E-06 45.6 8.4 38 187-230 102-139 (196)
136 1fje_B Nucleolin RBD12, protei 95.4 0.0048 1.6E-07 51.5 1.5 38 310-347 133-172 (175)
137 1sjr_A Polypyrimidine tract-bi 95.2 0.19 6.6E-06 41.6 10.7 35 313-347 84-122 (164)
138 3sde_A Paraspeckle component 1 95.1 0.12 4E-06 46.2 10.1 37 188-230 95-131 (261)
139 2yh0_A Splicing factor U2AF 65 95.1 0.097 3.3E-06 44.1 9.0 38 187-230 112-149 (198)
140 3smz_A Protein raver-1, ribonu 95.0 0.079 2.7E-06 47.8 8.8 82 187-350 182-265 (284)
141 4f02_A Polyadenylate-binding p 95.0 0.1 3.4E-06 45.1 9.0 36 188-229 102-137 (213)
142 2cjk_A Nuclear polyadenylated 94.8 0.064 2.2E-06 43.9 7.0 36 188-229 86-121 (167)
143 1wel_A RNA-binding protein 12; 94.8 0.022 7.4E-07 44.8 3.7 27 187-217 23-49 (124)
144 3u1l_A PRE-mRNA-splicing facto 94.8 0.15 5E-06 45.2 9.4 40 187-228 132-176 (240)
145 3pgw_A U1-A; protein-RNA compl 94.7 0.31 1.1E-05 43.7 11.9 36 187-228 7-46 (282)
146 3s7r_A Heterogeneous nuclear r 94.6 0.055 1.9E-06 39.3 5.4 38 187-230 9-46 (87)
147 3egn_A RNA-binding protein 40; 94.4 0.019 6.7E-07 46.3 2.8 36 311-346 90-127 (143)
148 3ucg_A Polyadenylate-binding p 94.4 0.063 2.1E-06 39.1 5.3 37 188-230 5-41 (89)
149 2cpd_A Apobec-1 stimulating pr 94.4 0.093 3.2E-06 39.2 6.3 41 186-230 12-52 (99)
150 1sjq_A Polypyrimidine tract-bi 94.4 0.075 2.6E-06 40.6 5.8 39 186-230 13-51 (105)
151 2g4b_A Splicing factor U2AF 65 94.3 0.56 1.9E-05 38.3 11.8 58 313-371 51-116 (172)
152 1jmt_A Splicing factor U2AF 35 94.2 0.17 5.7E-06 38.4 7.5 57 291-347 34-104 (104)
153 2dgt_A RNA-binding protein 30; 94.1 0.093 3.2E-06 38.6 5.7 39 186-230 7-45 (92)
154 1qm9_A Polypyrimidine tract-bi 94.1 0.26 9E-06 41.5 9.4 35 187-227 118-153 (198)
155 3d2w_A TAR DNA-binding protein 94.1 0.052 1.8E-06 40.0 4.2 38 187-230 9-46 (89)
156 3tyt_A Heterogeneous nuclear r 94.0 0.19 6.5E-06 43.2 8.4 36 187-228 121-158 (205)
157 2ytc_A PRE-mRNA-splicing facto 94.0 0.12 4E-06 37.2 6.0 38 186-229 9-46 (85)
158 2adc_A Polypyrimidine tract-bi 94.0 0.36 1.2E-05 42.0 10.3 36 187-228 149-185 (229)
159 3zzy_A Polypyrimidine tract-bi 93.8 0.34 1.2E-05 38.4 8.8 35 315-349 68-106 (130)
160 2xs2_A Deleted in azoospermia- 93.7 0.1 3.5E-06 39.1 5.4 38 187-230 7-44 (102)
161 1wex_A Hypothetical protein (r 93.6 0.13 4.5E-06 39.1 5.9 38 186-229 12-49 (104)
162 2dit_A HIV TAT specific factor 93.5 0.27 9.3E-06 37.6 7.6 65 292-356 35-109 (112)
163 2dh8_A DAZ-associated protein 93.5 0.09 3.1E-06 39.7 4.7 38 187-230 14-51 (105)
164 1wf0_A TDP-43, TAR DNA-binding 93.4 0.06 2E-06 39.3 3.5 38 187-230 3-40 (88)
165 2ad9_A Polypyrimidine tract-bi 93.3 0.11 3.6E-06 40.7 5.0 39 186-230 28-66 (119)
166 3r27_A HnRNP L, heterogeneous 93.2 0.16 5.4E-06 38.4 5.6 37 186-228 18-54 (100)
167 2ghp_A U4/U6 snRNA-associated 93.1 0.51 1.7E-05 42.5 10.1 35 188-228 116-151 (292)
168 1uaw_A Mouse-musashi-1; RNP-ty 93.0 0.073 2.5E-06 37.5 3.4 35 190-230 1-35 (77)
169 2khc_A Testis-specific RNP-typ 93.0 0.095 3.3E-06 40.5 4.3 38 187-230 38-75 (118)
170 1x4g_A Nucleolysin TIAR; struc 92.9 0.17 6E-06 38.4 5.7 38 187-230 23-60 (109)
171 2err_A Ataxin-2-binding protei 92.8 0.13 4.3E-06 39.3 4.7 39 186-230 26-64 (109)
172 1iqt_A AUF1, heterogeneous nuc 92.8 0.074 2.5E-06 37.3 3.1 33 191-229 1-33 (75)
173 2cq1_A PTB-like protein L; RRM 92.6 0.12 4.2E-06 39.0 4.3 39 186-230 12-50 (101)
174 2dgx_A KIAA0430 protein; RRM d 92.6 0.27 9.4E-06 36.3 6.2 38 187-230 7-48 (96)
175 2cq4_A RNA binding motif prote 92.5 0.15 5E-06 39.2 4.7 37 188-230 24-60 (114)
176 2jwn_A Embryonic polyadenylate 91.9 0.18 6E-06 39.3 4.6 37 188-230 35-71 (124)
177 2hvz_A Splicing factor, argini 91.7 0.24 8.3E-06 36.9 5.0 35 190-230 1-35 (101)
178 2mss_A Protein (musashi1); RNA 91.7 0.13 4.4E-06 36.0 3.2 33 191-229 1-33 (75)
179 1x4d_A Matrin 3; structural ge 91.7 0.12 4.1E-06 39.2 3.2 37 187-229 13-50 (102)
180 1x4b_A Heterogeneous nuclear r 91.6 0.19 6.5E-06 38.6 4.4 37 188-230 26-62 (116)
181 2la4_A Nuclear and cytoplasmic 90.7 0.37 1.3E-05 35.8 5.2 36 187-228 25-60 (101)
182 2xnq_A Nuclear polyadenylated 90.0 0.52 1.8E-05 34.9 5.4 36 186-227 19-55 (97)
183 3s6e_A RNA-binding protein 39; 89.8 0.49 1.7E-05 36.6 5.3 45 292-336 26-78 (114)
184 2d9o_A DNAJ (HSP40) homolog, s 89.8 0.44 1.5E-05 35.9 4.9 36 311-346 52-87 (100)
185 1wg1_A KIAA1579 protein, homol 89.7 0.23 8E-06 36.0 3.2 39 312-350 39-79 (88)
186 2hzc_A Splicing factor U2AF 65 89.6 0.74 2.5E-05 32.9 5.9 40 187-230 4-52 (87)
187 3v4m_A Splicing factor U2AF 65 89.6 0.81 2.8E-05 34.6 6.3 36 312-347 58-95 (105)
188 2m2b_A RNA-binding protein 10; 89.5 0.3 1E-05 38.5 3.9 38 187-230 21-60 (131)
189 2e5g_A U6 snRNA-specific termi 88.0 0.77 2.6E-05 33.6 5.1 33 187-225 6-38 (94)
190 2hgn_A Heterogeneous nuclear r 87.9 0.27 9.2E-06 39.5 2.6 37 187-230 44-80 (139)
191 2nlw_A Eukaryotic translation 87.5 0.58 2E-05 35.2 4.2 39 188-228 14-54 (105)
192 2hvz_A Splicing factor, argini 85.6 1.4 4.9E-05 32.5 5.5 35 312-346 36-72 (101)
193 2dhx_A Poly (ADP-ribose) polym 85.4 1.3 4.3E-05 33.4 4.9 37 188-228 7-46 (104)
194 1fjc_A Nucleolin RBD2, protein 85.4 0.84 2.9E-05 33.4 4.0 37 311-347 51-89 (96)
195 2dgx_A KIAA0430 protein; RRM d 84.9 1 3.6E-05 33.0 4.4 34 313-346 52-87 (96)
196 1wg1_A KIAA1579 protein, homol 84.8 0.59 2E-05 33.8 2.9 33 188-227 4-36 (88)
197 2cqh_A IGF-II mRNA-binding pro 84.5 0.97 3.3E-05 32.9 4.0 35 313-347 44-81 (93)
198 1x5p_A Negative elongation fac 84.5 1.2 4E-05 32.8 4.5 38 311-348 47-86 (97)
199 2mss_A Protein (musashi1); RNA 84.5 1.1 3.7E-05 31.0 4.1 21 311-331 39-59 (75)
200 2j8a_A Histone-lysine N-methyl 84.3 1.4 4.8E-05 34.9 4.9 36 190-231 3-42 (136)
201 2cqh_A IGF-II mRNA-binding pro 83.7 0.93 3.2E-05 33.0 3.6 28 187-218 6-33 (93)
202 2cpd_A Apobec-1 stimulating pr 82.9 1.5 5.3E-05 32.2 4.6 36 312-347 50-87 (99)
203 2xnq_A Nuclear polyadenylated 82.6 1.8 6.2E-05 31.9 4.9 36 312-347 56-93 (97)
204 1x4g_A Nucleolysin TIAR; struc 82.3 1.8 6.2E-05 32.5 4.9 36 313-348 61-98 (109)
205 2bz2_A Negative elongation fac 82.0 2.3 7.8E-05 32.9 5.5 38 311-348 71-110 (121)
206 1uaw_A Mouse-musashi-1; RNP-ty 82.0 0.96 3.3E-05 31.4 3.0 24 311-334 40-63 (77)
207 2lcw_A RNA-binding protein FUS 81.8 0.32 1.1E-05 37.3 0.0 32 187-224 5-36 (116)
208 3pgw_A U1-A; protein-RNA compl 80.4 2 6.9E-05 38.2 5.3 36 187-228 205-240 (282)
209 1wex_A Hypothetical protein (r 80.4 2.6 9E-05 31.6 5.1 36 312-347 50-89 (104)
210 2nlw_A Eukaryotic translation 79.8 1.5 5.2E-05 32.8 3.6 38 311-348 59-99 (105)
211 1iqt_A AUF1, heterogeneous nuc 79.5 0.81 2.8E-05 31.7 1.8 22 311-332 39-60 (75)
212 2dgt_A RNA-binding protein 30; 79.2 2.6 9E-05 30.4 4.7 35 313-347 44-80 (92)
213 3ucg_A Polyadenylate-binding p 78.8 1.6 5.6E-05 31.2 3.4 36 311-347 46-83 (89)
214 2cq1_A PTB-like protein L; RRM 78.6 1.6 5.6E-05 32.6 3.4 35 313-347 51-89 (101)
215 2cq2_A Hypothetical protein LO 78.2 1.6 5.3E-05 33.7 3.2 23 314-336 64-86 (114)
216 2diu_A KIAA0430 protein; struc 77.9 2 6.7E-05 32.0 3.5 38 187-225 7-44 (96)
217 1wf0_A TDP-43, TAR DNA-binding 77.7 0.67 2.3E-05 33.4 0.9 37 312-348 41-77 (88)
218 2e5i_A Heterogeneous nuclear r 77.4 4.5 0.00015 31.5 5.8 36 315-350 64-103 (124)
219 1x4d_A Matrin 3; structural ge 77.4 2.2 7.7E-05 32.0 3.8 37 313-349 52-92 (102)
220 3r27_A HnRNP L, heterogeneous 77.4 2.5 8.5E-05 31.7 4.1 25 312-336 56-80 (100)
221 2la4_A Nuclear and cytoplasmic 76.4 2.4 8.2E-05 31.2 3.8 26 311-336 61-86 (101)
222 1fje_B Nucleolin RBD12, protei 75.8 4.1 0.00014 33.0 5.5 59 311-370 52-120 (175)
223 2cq2_A Hypothetical protein LO 75.7 2.7 9.2E-05 32.3 3.9 37 187-229 23-61 (114)
224 1fjc_A Nucleolin RBD2, protein 75.4 1.6 5.4E-05 31.9 2.5 27 187-217 14-40 (96)
225 1sjq_A Polypyrimidine tract-bi 75.3 2.3 7.9E-05 32.2 3.4 22 313-334 52-73 (105)
226 3s7r_A Heterogeneous nuclear r 75.3 1.6 5.6E-05 31.1 2.5 22 311-332 51-72 (87)
227 3ue2_A Poly(U)-binding-splicin 75.1 3.1 0.00011 32.1 4.2 42 187-231 18-61 (118)
228 2ytc_A PRE-mRNA-splicing facto 74.8 2.2 7.6E-05 30.2 3.1 22 312-333 47-68 (85)
229 2err_A Ataxin-2-binding protei 74.8 2.1 7.1E-05 32.3 3.1 35 312-346 68-104 (109)
230 3d2w_A TAR DNA-binding protein 74.2 1.4 4.9E-05 31.9 1.9 18 312-329 47-64 (89)
231 2ad9_A Polypyrimidine tract-bi 73.9 2.5 8.6E-05 32.7 3.4 35 313-347 67-105 (119)
232 2hzc_A Splicing factor U2AF 65 73.9 2 6.8E-05 30.5 2.6 22 312-334 52-73 (87)
233 3ue2_A Poly(U)-binding-splicin 73.4 2.9 0.0001 32.3 3.6 36 313-348 71-108 (118)
234 2yh0_A Splicing factor U2AF 65 72.6 6 0.0002 32.7 5.8 35 312-346 155-191 (198)
235 2jwn_A Embryonic polyadenylate 70.0 4.7 0.00016 30.8 4.2 36 311-347 76-113 (124)
236 1x4b_A Heterogeneous nuclear r 69.9 2.7 9.4E-05 31.8 2.8 22 311-332 67-88 (116)
237 2dh8_A DAZ-associated protein 69.7 2.2 7.4E-05 31.7 2.1 21 312-332 57-77 (105)
238 2e5g_A U6 snRNA-specific termi 68.0 3.9 0.00013 29.6 3.2 34 315-349 47-82 (94)
239 2kn4_A Immunoglobulin G-bindin 67.1 12 0.00042 29.7 6.4 62 311-372 11-93 (158)
240 2khc_A Testis-specific RNP-typ 67.0 3 0.0001 31.7 2.4 25 311-335 80-104 (118)
241 2e5i_A Heterogeneous nuclear r 66.8 8 0.00027 30.1 4.9 37 188-230 22-60 (124)
242 3v4m_A Splicing factor U2AF 65 66.3 5.5 0.00019 29.8 3.8 44 187-232 3-52 (105)
243 2hgn_A Heterogeneous nuclear r 66.1 2.1 7E-05 34.2 1.3 21 311-331 84-104 (139)
244 2m2b_A RNA-binding protein 10; 64.6 3.8 0.00013 31.9 2.6 25 311-336 65-89 (131)
245 1l8d_A DNA double-strand break 64.2 39 0.0013 25.3 8.4 32 275-306 49-86 (112)
246 2cq4_A RNA binding motif prote 63.2 3.5 0.00012 31.0 2.2 24 311-335 65-88 (114)
247 1go4_E MAD1 (mitotic arrest de 59.5 33 0.0011 25.4 6.7 71 232-307 19-91 (100)
248 2lcw_A RNA-binding protein FUS 63.4 2 6.8E-05 32.7 0.0 25 311-335 55-79 (116)
249 2xs2_A Deleted in azoospermia- 56.5 2 6.7E-05 31.8 -0.4 20 312-331 49-68 (102)
250 1x5p_A Negative elongation fac 55.0 17 0.00057 26.2 4.6 34 187-228 13-46 (97)
251 1owx_A Lupus LA protein, SS-B, 54.2 10 0.00035 29.4 3.4 40 187-231 16-55 (121)
252 3he5_A Synzip1; heterodimeric 52.2 36 0.0012 20.4 4.9 20 282-301 29-48 (49)
253 3tht_A Alkylated DNA repair pr 49.9 11 0.00038 34.9 3.5 22 314-335 57-78 (345)
254 3dxb_A Thioredoxin N-terminall 49.2 16 0.00056 30.9 4.3 38 311-348 173-212 (222)
255 1wey_A Calcipressin 1; structu 43.2 33 0.0011 25.7 4.5 45 189-233 5-57 (104)
256 2dnr_A Synaptojanin-1; RRM dom 43.0 9.8 0.00034 27.9 1.5 32 314-346 50-83 (91)
257 2dhx_A Poly (ADP-ribose) polym 42.6 23 0.0008 26.5 3.6 33 314-346 48-81 (104)
258 1ufw_A Synaptojanin 2; RNP dom 39.6 18 0.0006 26.7 2.4 19 313-331 58-76 (95)
259 2dnr_A Synaptojanin-1; RRM dom 38.6 43 0.0015 24.4 4.4 44 186-231 4-51 (91)
260 1whv_A Poly(A)-specific ribonu 35.5 42 0.0014 24.8 3.9 22 313-334 49-70 (100)
261 2bz2_A Negative elongation fac 34.9 36 0.0012 25.8 3.8 34 187-228 37-70 (121)
262 2l2t_A Receptor tyrosine-prote 33.3 72 0.0025 19.7 4.2 15 17-31 24-38 (44)
263 2d9o_A DNAJ (HSP40) homolog, s 31.6 1.4E+02 0.0048 21.7 6.5 41 187-229 8-51 (100)
264 3twe_A Alpha4H; unknown functi 30.5 43 0.0015 17.6 2.3 17 235-251 4-20 (27)
265 2ks1_B Epidermal growth factor 27.6 49 0.0017 20.5 2.7 15 17-31 25-39 (44)
266 1pfi_A Major coat protein of P 27.4 85 0.0029 19.0 3.6 25 5-29 21-45 (46)
267 2ldf_A Sarafotoxin-M, SRTX-M; 27.4 17 0.00058 19.5 0.4 6 351-356 18-23 (26)
268 1edn_A Endothelin-1; signal po 25.0 16 0.00056 19.6 0.1 7 350-356 17-23 (26)
269 2jwa_A Receptor tyrosine-prote 24.4 83 0.0029 19.5 3.3 14 17-30 25-38 (44)
270 2lde_A Sarafotoxin-I3; endothe 24.3 18 0.00061 19.5 0.2 7 350-356 17-23 (26)
271 1ufw_A Synaptojanin 2; RNP dom 24.0 55 0.0019 24.0 2.8 45 185-231 11-60 (95)
272 1srb_A Sarafotoxins precursor; 23.5 19 0.00064 19.4 0.2 6 351-356 18-23 (26)
273 2lf0_A Uncharacterized protein 22.7 1.9E+02 0.0064 22.0 5.6 23 284-306 36-58 (123)
274 4eyt_A Telomerase associated p 20.1 95 0.0032 22.4 3.3 33 312-344 45-77 (129)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=97.65 E-value=0.00038 Score=53.03 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=31.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
.+..+|.|.|||.+.+ ++.|+++|+++ |.|.++.+.+|
T Consensus 17 ~~gt~lfV~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d 54 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMT----QDELRSLFSSI--GEVESAKLIRD 54 (99)
T ss_dssp CCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEeEeeec
Confidence 3457899999999886 89999999987 67989888764
No 2
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=0.00079 Score=50.43 Aligned_cols=82 Identities=12% Similarity=0.166 Sum_probs=61.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (381)
+..++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|..
T Consensus 3 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~~~---------------------------------- 42 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNIT----EDMLRGIFEPF--GKIDNIVLMKDSD---------------------------------- 42 (95)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEECCSS----------------------------------
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEeecCC----------------------------------
Confidence 4579999999999875 89999999887 5688887764311
Q ss_pred CCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEe
Q 016889 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVS 344 (381)
Q Consensus 267 ~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~ 344 (381)
..++.+.|||+|.+..+|..|.+.+....- ..+.|+
T Consensus 43 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 43 ------------------------------------------TGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVG 80 (95)
T ss_dssp ------------------------------------------SCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred ------------------------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 013467999999999999999997665432 346677
Q ss_pred eCCCCC
Q 016889 345 DAPESR 350 (381)
Q Consensus 345 ~AP~P~ 350 (381)
.|.++.
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 775543
No 3
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=97.53 E-value=0.00048 Score=50.78 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=30.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 2 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 38 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVT----KDHIMEIFSTY--GKIKMIDMPV 38 (88)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEe
Confidence 3568999999999886 89999999987 5677776654
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.53 E-value=0.00064 Score=52.85 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=62.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (381)
+..++|.|.|||.+.+ ++.|+++|+++ |.|.+|.+.+|..
T Consensus 4 ~p~~~lfV~nL~~~~t----e~~L~~~F~~~--G~i~~v~i~~d~~---------------------------------- 43 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVR----ETFLKDMCRKY--GEVEEVEILLHPR---------------------------------- 43 (110)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEECTT----------------------------------
T ss_pred CCCcEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEECCC----------------------------------
Confidence 5679999999999875 89999999887 6799998886421
Q ss_pred CCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEe
Q 016889 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVS 344 (381)
Q Consensus 267 ~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~ 344 (381)
..++.|.|||+|.+..+|+.|.+.+....- ..+.|+
T Consensus 44 ------------------------------------------tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 44 ------------------------------------------TRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 113468999999999999999997765432 235577
Q ss_pred eCCC
Q 016889 345 DAPE 348 (381)
Q Consensus 345 ~AP~ 348 (381)
.|+.
T Consensus 82 ~a~~ 85 (110)
T 3s8s_A 82 LDIK 85 (110)
T ss_dssp ECST
T ss_pred ECCC
Confidence 7763
No 5
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=97.50 E-value=0.0014 Score=50.72 Aligned_cols=84 Identities=12% Similarity=0.181 Sum_probs=63.5
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~ 265 (381)
.+..++|+|.|||.... ++.|+++|+++ |.|.++.+.+|..
T Consensus 23 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 63 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNIT----EDMLRGIFEPF--GRIESIQLMMDSE--------------------------------- 63 (108)
T ss_dssp CSSCEEEEEECCCSSCC----HHHHHHHHTTT--SCEEEEEEEEETT---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEcCC---------------------------------
Confidence 35679999999999875 89999999877 5688888775311
Q ss_pred CCCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEE
Q 016889 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTV 343 (381)
Q Consensus 266 ~~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v 343 (381)
...+.|.|||+|.+..+|..|.+.+....- ..+.|
T Consensus 64 -------------------------------------------~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 64 -------------------------------------------TGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp -------------------------------------------TTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred -------------------------------------------CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 013467999999999999999987765432 34668
Q ss_pred eeCCCCCC
Q 016889 344 SDAPESRE 351 (381)
Q Consensus 344 ~~AP~P~D 351 (381)
..|-+..|
T Consensus 101 ~~a~~k~d 108 (108)
T 2jrs_A 101 GHVTERTD 108 (108)
T ss_dssp ECSCSSCC
T ss_pred EEcccCCC
Confidence 87766554
No 6
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.44 E-value=0.0018 Score=49.49 Aligned_cols=82 Identities=17% Similarity=0.291 Sum_probs=60.7
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~ 265 (381)
....++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+|..
T Consensus 10 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 50 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLD----EKDLKPLFEEF--GKIYELTVLKDRF--------------------------------- 50 (106)
T ss_dssp CTTCEEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEECCCCSS---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEecCC---------------------------------
Confidence 35679999999999876 89999999988 5677776554210
Q ss_pred CCCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCC-----CCC
Q 016889 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL-----VDT 340 (381)
Q Consensus 266 ~~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~-----~~~ 340 (381)
..+..+.|||+|.+..+|..|.+.+.... -..
T Consensus 51 -------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 51 -------------------------------------------TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp -------------------------------------------SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred -------------------------------------------CCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 01346799999999999999998776543 244
Q ss_pred eEEeeCCCC
Q 016889 341 WTVSDAPES 349 (381)
Q Consensus 341 ~~v~~AP~P 349 (381)
+.|..|-.+
T Consensus 88 l~v~~a~~~ 96 (106)
T 2dgp_A 88 IQVKPADSE 96 (106)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCcc
Confidence 667776443
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.44 E-value=0.0019 Score=53.31 Aligned_cols=102 Identities=23% Similarity=0.294 Sum_probs=73.6
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~ 267 (381)
+.+||+|.|||.+.. ++.|+++|+++ |.|.++.+.+|..
T Consensus 1 s~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~~~~~~~----------------------------------- 39 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMT----QEEFRSLFGSI--GEIESCKLVRDKI----------------------------------- 39 (167)
T ss_dssp CCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEECTT-----------------------------------
T ss_pred CcceEEEcCCCCCCC----HHHHHHHHHhc--CCeEEEEEEeCCC-----------------------------------
Confidence 468999999999875 89999999987 5688887764211
Q ss_pred CCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEee
Q 016889 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSD 345 (381)
Q Consensus 268 rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~ 345 (381)
..++.|.|||+|.+..+|..|.+.+..... ..+.+..
T Consensus 40 -----------------------------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 40 -----------------------------------------TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp -----------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 113468999999999999999987654322 2344555
Q ss_pred CCCC------CCeeeCCCCCChhhHHHHHHHH
Q 016889 346 APES------RELIWNNLNIKFFQRQIRHFFC 371 (381)
Q Consensus 346 AP~P------~DIiW~NL~~~~~~r~~R~~~~ 371 (381)
+..+ ..|.=.||.....+.-++.++.
T Consensus 79 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~ 110 (167)
T 1fxl_A 79 ARPSSASIRDANLYVSGLPKTMTQKELEQLFS 110 (167)
T ss_dssp CCCCCGGGTTCEEEEESCCTTCCHHHHHHHHG
T ss_pred cCCCcccCCCCcEEECCCCCcCCHHHHHHHHH
Confidence 5433 3488888887777766666553
No 8
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.43 E-value=0.0013 Score=50.04 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=31.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 10 ~~~~~l~v~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 46 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTN----EQSLEQVFSKY--GQISEVVVVK 46 (102)
T ss_dssp CCCSEEEEESCCTTCC----HHHHHHHHHHH--SCCCEEEECC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 5679999999999876 89999999988 5687877664
No 9
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.41 E-value=0.00043 Score=52.39 Aligned_cols=39 Identities=3% Similarity=0.056 Sum_probs=30.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
....||+|.|||.+.+ ++.|+++|+++.+-.+.+|.+++
T Consensus 7 ~~m~tlfV~nL~~~~t----ee~L~~~F~~~G~i~v~~v~i~~ 45 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTV----VDSIMTALSPYASLAVNNIRLIK 45 (95)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHSTTTCCCCGGGEECCC
T ss_pred CccCEEEEeCCCCcCC----HHHHHHHHHhhCCccEEEEEEEe
Confidence 5678999999999886 89999999887543455555443
No 10
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.40 E-value=0.0025 Score=48.64 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=31.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQS----EEDVLRLFQPF--GVIDECTVLR 49 (105)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 5679999999999876 89999999977 5688887765
No 11
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=97.38 E-value=0.00024 Score=53.27 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=26.4
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEE
Q 016889 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (381)
Q Consensus 189 ~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i 227 (381)
+.+|+|+|||.+.+ ++.|+++|+++.+ .|.+|.+
T Consensus 1 S~~i~v~nLp~~~t----e~~l~~~F~~~G~-~v~~v~i 34 (91)
T 2lxi_A 1 SNIVMLRMLPQAAT----EDDIRGQLQSHGV-QAREVRL 34 (91)
T ss_dssp CCEEEEETCCSSCC----HHHHHHHHHHHTC-CCSBCCS
T ss_pred CCEEEEeCCCCCCC----HHHHHHHHHHhCC-EeEEEEE
Confidence 47899999999886 8999999998842 4555443
No 12
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.38 E-value=0.0016 Score=49.09 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=59.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (381)
...++|+|.|||.+.+ ++.|+++|+++ |.|.++.+.+|-.
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 45 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSS----EEDLEKLFSAY--GPLSELHYPIDSL---------------------------------- 45 (99)
T ss_dssp CSCEEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCCCTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEEecCC----------------------------------
Confidence 5579999999999876 88999999987 5677776553210
Q ss_pred CCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEe
Q 016889 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (381)
Q Consensus 267 ~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~ 344 (381)
..++.+.|||+|.+..+|..|.+.+.... -..+.|.
T Consensus 46 ------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 46 ------------------------------------------TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp ------------------------------------------TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred ------------------------------------------CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 12346799999999999999998765442 2345677
Q ss_pred eCCCCC
Q 016889 345 DAPESR 350 (381)
Q Consensus 345 ~AP~P~ 350 (381)
.|-.+.
T Consensus 84 ~a~~~~ 89 (99)
T 1whw_A 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred EcCCCc
Confidence 665443
No 13
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=97.37 E-value=0.00072 Score=50.28 Aligned_cols=81 Identities=14% Similarity=0.117 Sum_probs=55.2
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 016889 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRP 269 (381)
Q Consensus 190 ~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~rp 269 (381)
+||.|.|||.+.+ ++.|+++|+++.+..|.++.+.+|-.
T Consensus 2 ~~l~V~nL~~~~t----~~~l~~~F~~~G~~~v~~v~i~~~~~------------------------------------- 40 (90)
T 3p5t_L 2 IALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFENRA------------------------------------- 40 (90)
T ss_dssp --CEEESCCTTCC----HHHHHHHHHTTTCCCCCCEEEEECTT-------------------------------------
T ss_pred eEEEEeCCCCCCC----HHHHHHHHHHhCCCceEEEEEEecCC-------------------------------------
Confidence 6899999999875 89999999987433687877775321
Q ss_pred cccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016889 270 TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (381)
Q Consensus 270 ~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 347 (381)
..++.|.|||+|.+..+|..|.+.+....- ....|..|.
T Consensus 41 ---------------------------------------~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 41 ---------------------------------------NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp ---------------------------------------TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred ---------------------------------------CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 113467999999999999999987765433 345666664
Q ss_pred CCC
Q 016889 348 ESR 350 (381)
Q Consensus 348 ~P~ 350 (381)
.|.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 443
No 14
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.0021 Score=48.60 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=31.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 15 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 51 (100)
T 2do4_A 15 LEKHKLFISGLPFSCT----KEELEEICKAH--GTVKDLRLVT 51 (100)
T ss_dssp CCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEE
Confidence 5679999999999876 89999999987 5688887765
No 15
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=97.33 E-value=0.0014 Score=48.10 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=30.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 4 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 41 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEIT----TAAIAAAFAPF--GRISDARVVKD 41 (87)
T ss_dssp --CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCceEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEEec
Confidence 4579999999999875 89999999987 56888887653
No 16
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.33 E-value=0.0017 Score=48.84 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=58.1
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 016889 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 268 (381)
Q Consensus 189 ~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~r 268 (381)
+++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|-.
T Consensus 2 ~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~------------------------------------ 39 (96)
T 2x1f_A 2 SRVVYLGSIPYDQT----EEQILDLCSNV--GPVINLKMMFDPQ------------------------------------ 39 (96)
T ss_dssp CSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCBCTT------------------------------------
T ss_pred CcEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEEeCCC------------------------------------
Confidence 58999999999876 89999999987 5687776553210
Q ss_pred CcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeC
Q 016889 269 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDA 346 (381)
Q Consensus 269 p~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 346 (381)
..+..|.|||+|.+..+|..|.+.+....- ..+.|..|
T Consensus 40 ----------------------------------------~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 40 ----------------------------------------TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp ----------------------------------------TCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ----------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 113467999999999999999987665422 34557777
Q ss_pred CCC
Q 016889 347 PES 349 (381)
Q Consensus 347 P~P 349 (381)
-.+
T Consensus 80 ~~~ 82 (96)
T 2x1f_A 80 SNS 82 (96)
T ss_dssp SCS
T ss_pred CCC
Confidence 543
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.32 E-value=0.0031 Score=47.53 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=31.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+
T Consensus 8 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 44 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCG----ETELREYFKKF--GVVTEVVMIY 44 (99)
T ss_dssp SSCCEEEEESCCSSCC----HHHHHHHHSSS--SCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 5679999999999876 89999999886 5788887764
No 18
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.32 E-value=0.0022 Score=47.56 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=30.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~~~i~~ 42 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFT----WKMLKDKFNEC--GHVLYADIKM 42 (92)
T ss_dssp SSCCEEEECSCCTTCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 5679999999999875 89999999987 5687777664
No 19
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.31 E-value=0.0028 Score=48.47 Aligned_cols=84 Identities=15% Similarity=0.202 Sum_probs=60.9
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~ 265 (381)
....++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+|...
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~~-------------------------------- 53 (107)
T 2cph_A 12 KQTTSKILVRNIPFQAN----QREIRELFSTF--GELKTVRLPKKMTG-------------------------------- 53 (107)
T ss_dssp SSCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCCCCSS--------------------------------
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHHcc--CCeEEEEEecCCCC--------------------------------
Confidence 35679999999999876 89999999987 56877766543100
Q ss_pred CCCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHh-hcCC--CCCeE
Q 016889 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSL-HAQL--VDTWT 342 (381)
Q Consensus 266 ~~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~-~~~~--~~~~~ 342 (381)
.....+.|||+|.+..+|..|.+.+ .... -..+.
T Consensus 54 -------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 54 -------------------------------------------TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp -------------------------------------------SCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred -------------------------------------------CCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 1235679999999999999999987 4332 23466
Q ss_pred EeeCCCCC
Q 016889 343 VSDAPESR 350 (381)
Q Consensus 343 v~~AP~P~ 350 (381)
|..|-...
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 77775433
No 20
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.31 E-value=0.0024 Score=48.74 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=60.3
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~ 265 (381)
....++|.|.|||.+.+ ++.|+++|+++ |.|.+|.+.+|..
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 52 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVS----EPLLWELFLQA--GPVVNTHMPKDRV--------------------------------- 52 (105)
T ss_dssp CCTTTEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCBCSS---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecCC---------------------------------
Confidence 35679999999999876 89999999987 5687776654211
Q ss_pred CCCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEE
Q 016889 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTV 343 (381)
Q Consensus 266 ~~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v 343 (381)
..+..|.|||+|.+..+|..|.+.+....- ..+.|
T Consensus 53 -------------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 53 -------------------------------------------TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp -------------------------------------------SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred -------------------------------------------CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 113457899999999999999997664432 34667
Q ss_pred eeCCCC
Q 016889 344 SDAPES 349 (381)
Q Consensus 344 ~~AP~P 349 (381)
..|-.+
T Consensus 90 ~~a~~~ 95 (105)
T 1x5u_A 90 NKASAH 95 (105)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 776443
No 21
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.30 E-value=0.0012 Score=48.22 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=30.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 5 ~~~~~l~V~nl~~~~~----~~~l~~~f~~~--G~i~~v~i~~ 41 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIPL 41 (85)
T ss_dssp CCSSEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECCE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHhcc--CCEEEEEEEE
Confidence 5679999999999875 89999999987 5687777654
No 22
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=97.30 E-value=0.0023 Score=46.45 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=29.6
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 190 ~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
+||.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 2 ~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 36 (83)
T 3md1_A 2 FNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMWD 36 (83)
T ss_dssp EEEEEECCCTTCC----HHHHHHHHTTS--TTEEEEEEEEC
T ss_pred eEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEc
Confidence 7899999999875 89999999876 57888887753
No 23
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.29 E-value=0.0024 Score=50.02 Aligned_cols=37 Identities=5% Similarity=0.138 Sum_probs=30.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+
T Consensus 5 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 41 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETN----EKMLKAVFGKH--GPISEVLLIK 41 (116)
T ss_dssp CSCCEEEEECCTTTCC----HHHHHHHHHTS--SCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 3568999999999875 89999999987 5688877764
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.26 E-value=0.0022 Score=50.02 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=30.3
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...+|.|.|||.+.+ ++.|+++|+++ |.|.+|.+.+
T Consensus 4 ~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~v~~v~i~~ 39 (115)
T 4f25_A 4 GSGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVC 39 (115)
T ss_dssp -CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCEEEECCCCCCCC----HHHHHHHHhcc--CCEEEEEEee
Confidence 456899999999875 89999999987 6788888775
No 25
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=97.25 E-value=0.0028 Score=49.32 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=31.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
+..++|+|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 23 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 59 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFG----DQDLLQMFMPF--GNVVSAKVFI 59 (115)
T ss_dssp STTCCEEEESCCSSCC----HHHHHHHHGGG--SCCSEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 5568999999999876 89999999987 5688887765
No 26
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.24 E-value=0.0028 Score=52.36 Aligned_cols=101 Identities=24% Similarity=0.289 Sum_probs=72.3
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~ 267 (381)
+.++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|..
T Consensus 2 ~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~~~~~----------------------------------- 40 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMT----DRELYALFRAI--GPINTCRIMRDYK----------------------------------- 40 (168)
T ss_dssp CCSEEEEECCCTTCC----HHHHHHHHHTT--SCEEEEECCEETT-----------------------------------
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEEeCC-----------------------------------
Confidence 468999999999875 89999999987 5677777654210
Q ss_pred CCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEee
Q 016889 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSD 345 (381)
Q Consensus 268 rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~ 345 (381)
...+.|.|||+|.+..+|..|.+.+..... ..+.+..
T Consensus 41 -----------------------------------------~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 41 -----------------------------------------TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 79 (168)
T ss_dssp -----------------------------------------TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred -----------------------------------------CCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEe
Confidence 113467999999999999999986654322 2234544
Q ss_pred CC------CCCCeeeCCCCCChhhHHHHHHH
Q 016889 346 AP------ESRELIWNNLNIKFFQRQIRHFF 370 (381)
Q Consensus 346 AP------~P~DIiW~NL~~~~~~r~~R~~~ 370 (381)
|. .+.-|.-.||.....+.-++.++
T Consensus 80 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 110 (168)
T 1b7f_A 80 ARPGGESIKDTNLYVTNLPRTITDDQLDTIF 110 (168)
T ss_dssp CCCCSSTTTTCEEEEESCCTTCCHHHHHHHH
T ss_pred cCCCcccCCCCCEEEeCCCCCCCHHHHHHhh
Confidence 42 34568889998877777676654
No 27
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.22 E-value=0.0015 Score=49.02 Aligned_cols=36 Identities=8% Similarity=0.194 Sum_probs=28.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEE-EEe
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS-MVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v-~i~ 228 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++ .+.
T Consensus 3 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~~~i~ 39 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEID----EKLLYDTFSAF--GVILQTPKIM 39 (96)
T ss_dssp SCCCEEEEECCCTTCC----HHHHHHHHHTT--SCBSSCCEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEE
Confidence 4579999999999875 89999999987 446555 443
No 28
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.21 E-value=0.0031 Score=47.93 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=31.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+++ ++.|+++|+++ |.|.++.+.+|
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGID----DERLRKAFSPF--GTITSAKVMME 50 (103)
T ss_dssp SSCCCEEEECCCTTCC----HHHHHHTTTTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEcC
Confidence 5679999999999876 88999999876 56888877653
No 29
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=97.20 E-value=0.0043 Score=47.36 Aligned_cols=39 Identities=8% Similarity=0.170 Sum_probs=32.2
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
....++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+|
T Consensus 20 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~~ 58 (106)
T 1p27_B 20 SVEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNLD 58 (106)
T ss_dssp BTTBEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCeEEEEEEec
Confidence 35568999999999876 89999999988 67888887753
No 30
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.20 E-value=0.0015 Score=50.12 Aligned_cols=37 Identities=5% Similarity=0.190 Sum_probs=31.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...+||.|.|||.+.+ ++.|+++|+++ |.|.+|.+.+
T Consensus 9 ~~~~~lfV~~Lp~~~t----e~~L~~~F~~~--G~v~~v~i~~ 45 (103)
T 1s79_A 9 VKNRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMRR 45 (103)
T ss_dssp SGGGCEEEECCCTTCC----HHHHHHHHHTS--SCEEEEEEEC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHhhc--CCEEEEEEEE
Confidence 5679999999999876 89999999987 5788888875
No 31
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.0021 Score=47.97 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=31.1
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
.+..++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 50 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLT----NNDLYRIFSKY--GKVVKVTIMK 50 (94)
T ss_dssp CCCTTSEEEESCCTTSC----HHHHHHHTTTT--SCEEEEEECC
T ss_pred CCCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 36679999999999876 88999999887 5688877664
No 32
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.18 E-value=0.002 Score=48.15 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=32.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+|
T Consensus 14 ~~~~~l~v~nlp~~~~----~~~l~~~F~~~--G~i~~v~i~~~ 51 (95)
T 2ywk_A 14 EADRTVFVGNLEARVR----EEILYELFLQA--GPLTKVTICKD 51 (95)
T ss_dssp TGGGEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 5679999999999875 89999999987 56888887753
No 33
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.17 E-value=0.0062 Score=46.22 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=31.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVT----EVLILQLFSQI--GPCKSCKMIT 49 (103)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEEEC
T ss_pred CCCCEEEEeCCCccCC----HHHHHHHHHhc--CCEeEEEEEe
Confidence 5579999999999875 89999999988 5688887765
No 34
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.16 E-value=0.0059 Score=46.33 Aligned_cols=38 Identities=8% Similarity=0.159 Sum_probs=31.5
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
....++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 49 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEIIF 49 (103)
T ss_dssp SCCCCEEEEESCCTTCC----HHHHHHHGGGT--SCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 35679999999999876 89999999987 5688877764
No 35
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.16 E-value=0.0028 Score=47.68 Aligned_cols=38 Identities=8% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+|
T Consensus 3 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 40 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTT----EETLKGVFSKV--GAIKSCTISKK 40 (98)
T ss_dssp CCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEec
Confidence 4578999999999875 89999999987 56888887764
No 36
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=0.0031 Score=47.06 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=31.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 13 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~ 49 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVY 49 (95)
T ss_dssp CGGGCEEEESCCSSCC----HHHHHHHHHTT--SCEEEEEEEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeeEEEEEE
Confidence 5679999999999875 88999999987 5688888775
No 37
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.14 E-value=0.0057 Score=50.82 Aligned_cols=104 Identities=21% Similarity=0.329 Sum_probs=74.6
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~ 267 (381)
.+++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|...
T Consensus 2 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~~---------------------------------- 41 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWS----EKDLRELFEQY--GAVYEINVLRDRSQ---------------------------------- 41 (175)
T ss_dssp CCEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEECSS----------------------------------
T ss_pred CceEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEecCCC----------------------------------
Confidence 368999999999876 89999999987 56888888764210
Q ss_pred CCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCC-----CCCeE
Q 016889 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL-----VDTWT 342 (381)
Q Consensus 268 rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~-----~~~~~ 342 (381)
| ..+..|.|||+|.+..+|..|.+.+.... ...+.
T Consensus 42 ------------~----------------------------~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 42 ------------N----------------------------PPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp ------------S----------------------------SCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred ------------C----------------------------CCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 0 12457899999999999999998765432 12233
Q ss_pred EeeCC-------CCCCeeeCCCCCChhhHHHHHHHH
Q 016889 343 VSDAP-------ESRELIWNNLNIKFFQRQIRHFFC 371 (381)
Q Consensus 343 v~~AP-------~P~DIiW~NL~~~~~~r~~R~~~~ 371 (381)
+..+. ....|.=.||.....+.-++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~ 117 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFS 117 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHG
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHH
Confidence 33332 345588889988877777776653
No 38
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.14 E-value=0.0051 Score=46.29 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=31.8
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcee-EEEEeec
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY-RSMVVTN 230 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~-~v~i~~d 230 (381)
....++|.|.|||.+.. ++.|+++|+++ |.|. ++.+.+|
T Consensus 6 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~v~i~~~ 45 (99)
T 2div_A 6 SGMAASLWMGDLEPYMD----ENFISRAFATM--GETVMSVKIIRN 45 (99)
T ss_dssp CSSSSEEEECSCCTTCC----HHHHHHHHHHT--TCCCCEEEEEEC
T ss_pred CCCccEEEEeCCCCCCC----HHHHHHHHHHh--CCcceEEEEeec
Confidence 35679999999999875 89999999987 5677 8777653
No 39
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.13 E-value=0.0051 Score=46.73 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=32.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|+|.|||.+.. ++.|+++|++.| |.|.+|.+.+|
T Consensus 7 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~~-G~v~~v~i~~~ 45 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVD----DGMLYEFFVKVY-PSCRGGKVVLD 45 (104)
T ss_dssp SCCCCEEEECCCTTCC----HHHHHHHHHHHC-TTEEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHhC-CCeEEEEEEEC
Confidence 5579999999999875 899999999833 57888887753
No 40
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=97.13 E-value=0.0044 Score=48.14 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=32.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|+|.|||.++. ++.|+++|+++ |.|.+|.+.+|
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEIT----TEDIKAAFAPF--GRISDARVVKD 50 (115)
T ss_dssp TTCEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEc
Confidence 5679999999999876 89999999987 56888887753
No 41
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.12 E-value=0.0023 Score=48.64 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=31.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|+|.|||.++. ++.|+++|+++ |.|.+|.+.+|
T Consensus 13 ~~~~~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTT----EQDLKEYFSTF--GEVLMVQVKKD 50 (103)
T ss_dssp CCCCCEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCcCC----HHHHHHHHHhc--CCeEEEEEEec
Confidence 4578999999999876 89999999987 56888887753
No 42
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.10 E-value=0.0057 Score=47.06 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=30.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|+|.|||.+.. ++.|+++|+++ |.|.+|.+.+
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 49 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSE----EEALGEVLQQF--GDLKYVRVVL 49 (111)
T ss_dssp CCCCCEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 4578999999999875 89999999987 5687777654
No 43
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.09 E-value=0.0033 Score=47.81 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=30.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+
T Consensus 11 ~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 47 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTS----PDSLRRVFEKY--GRVGDVYIPR 47 (103)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECCB
T ss_pred CCCeEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 4579999999999875 89999999987 5687776653
No 44
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.09 E-value=0.0032 Score=47.89 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=60.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|-.
T Consensus 6 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~~~~~---------------------------------- 45 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEAT----EEQLKDIFSEV--GPVVSFRLVYDRE---------------------------------- 45 (104)
T ss_dssp HHHSCEEEESCCTTSC----HHHHHHHHHTT--SCCSEEEEEEETT----------------------------------
T ss_pred CCccEEEEeCCCCcCC----HHHHHHHHHhc--CCeeEEEEEeCCC----------------------------------
Confidence 3468999999999876 89999999987 5688877765310
Q ss_pred CCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEe
Q 016889 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVS 344 (381)
Q Consensus 267 ~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~ 344 (381)
.....|.|||+|.+..+|..|.+.+....- ..+.|.
T Consensus 46 ------------------------------------------~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 46 ------------------------------------------TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp ------------------------------------------TTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred ------------------------------------------CCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 013467999999999999999987654432 346677
Q ss_pred eCCCC
Q 016889 345 DAPES 349 (381)
Q Consensus 345 ~AP~P 349 (381)
.|-.+
T Consensus 84 ~a~~~ 88 (104)
T 1p1t_A 84 NAASE 88 (104)
T ss_dssp ETTCT
T ss_pred eCCCc
Confidence 76544
No 45
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.07 E-value=0.0015 Score=49.57 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=29.4
Q ss_pred CcceEEEecCCC------CCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 188 QQFAVLVRDLPD------LPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 188 ~~~TvlV~~IP~------~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
.++||+|.|||. +.. ++.|+++|+++ |.|.+|.+++|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~----~~~L~~~F~~~--G~i~~v~i~~d 47 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVL----KKALTSLFSKA--GKVVNMEFPID 47 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHH----HHHHHHHHHTT--SCEEEEECCEE
T ss_pred cCcEEEEeCCCcCChHHHHHH----HHHHHHHHHhc--CCEeEEEEEEc
Confidence 368999999998 543 78999999877 57888877653
No 46
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.05 E-value=0.0037 Score=51.50 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=31.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+|
T Consensus 37 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 74 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTT----EEQIYELFSKS--GDIKKIIMGLD 74 (156)
T ss_dssp TTCCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEec
Confidence 4579999999999875 89999999988 56888887753
No 47
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.05 E-value=0.0014 Score=52.04 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=31.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCC--CceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP--DTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p--~~V~~v~i~~d 230 (381)
...++|+|.|||.+.+ +++|+++|+++.+ |.|.+|.+++|
T Consensus 21 ~~~~~v~V~nLp~~~t----e~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 21 ENQVIVRMRGLPFTAT----AEEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp CSCCEEEECSCCTTCC----HHHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhhCCccCCcceEEEEEC
Confidence 3479999999999876 8999999998854 45667777653
No 48
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.04 E-value=0.0028 Score=48.18 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
....++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~ 49 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTR----ETDLQELFRPF--GSISRIYLAK 49 (103)
T ss_dssp CSSSEEEEEESCCTTCC----HHHHHTTSTTT--CCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEee
Confidence 35679999999999875 88999999877 5688887765
No 49
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.03 E-value=0.0049 Score=48.63 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=30.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+
T Consensus 33 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~ 69 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVDY 69 (124)
T ss_dssp SSCEEEEEESCCSSCC----HHHHHHHHHTT--SCCSEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEEEEE
Confidence 4568999999999875 89999999987 5688877764
No 50
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=97.02 E-value=0.004 Score=47.65 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=32.3
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
....++|+|.|||.+.. ++.|+++|+++ |.|.+|.+.+|
T Consensus 26 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 64 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVHYD 64 (107)
T ss_dssp CCCSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEEC
Confidence 35679999999999876 89999999977 57888887753
No 51
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.02 E-value=0.0039 Score=47.48 Aligned_cols=37 Identities=11% Similarity=0.373 Sum_probs=30.6
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
....++|.|.|||.+.. ++.|+++|+++ | |.+|.+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G-i~~v~i~~ 48 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPR 48 (104)
T ss_dssp SSSCEEEEEESCCSSCC----HHHHHHHTTTS--C-EEEEECCB
T ss_pred CCCCCEEEEeCCCCcCC----HHHHHHHHHHC--C-ceEEEEec
Confidence 35679999999999876 89999999877 5 88877654
No 52
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.02 E-value=0.0054 Score=48.46 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=30.9
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
....++|+|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 19 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 56 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEAT----EEDIHDKFAEY--GEIKNIHLNL 56 (126)
T ss_dssp CSSSEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEECCB
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 35678999999999875 89999999977 5687777654
No 53
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0073 Score=49.59 Aligned_cols=98 Identities=17% Similarity=0.253 Sum_probs=67.1
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 016889 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTRP 269 (381)
Q Consensus 190 ~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~rp 269 (381)
|||.|.|||.+.+ ++.|+++|+++ |.|.++.+.+|-
T Consensus 1 R~l~V~nlp~~~t----~~~l~~~f~~~--G~i~~v~i~~~~-------------------------------------- 36 (166)
T 3md3_A 1 RVLYVGNLDKAIT----EDILKQYFQVG--GPIANIKIMIDK-------------------------------------- 36 (166)
T ss_dssp CEEEEEEEETTCC----HHHHHHHHGGG--SCEEEEEEECCC--------------------------------------
T ss_pred CEEEECCCCCcCC----HHHHHHHHHhc--CCeEEEEEEECC--------------------------------------
Confidence 6899999999876 89999999987 568888876321
Q ss_pred cccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016889 270 TIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (381)
Q Consensus 270 ~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 347 (381)
+.+..|.|||+|.+..+|..|.+.+..... ..+.+..|.
T Consensus 37 ---------------------------------------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 37 ---------------------------------------NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAF 77 (166)
T ss_dssp ---------------------------------------C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ---------------------------------------CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcC
Confidence 012457999999999999999977654322 123344432
Q ss_pred C--------CCCeeeCCCCCChhhHHHHHHH
Q 016889 348 E--------SRELIWNNLNIKFFQRQIRHFF 370 (381)
Q Consensus 348 ~--------P~DIiW~NL~~~~~~r~~R~~~ 370 (381)
. +..|.=.||.....+.-++.++
T Consensus 78 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 108 (166)
T 3md3_A 78 QSQQSSSDDTFNLFVGDLNVNVDDETLRNAF 108 (166)
T ss_dssp CCCCCCCTTCEEEEEESCCTTCCHHHHHHHH
T ss_pred CCCCCCCCCCceEEECCCCCCCCHHHHHHHH
Confidence 2 2236666777666655555544
No 54
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.99 E-value=0.0023 Score=48.55 Aligned_cols=36 Identities=8% Similarity=0.100 Sum_probs=29.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEe
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
...++|.|.|||.+.+ ++.|+++|+++ |.|.+|.+.
T Consensus 10 ~~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~ 45 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIP 45 (102)
T ss_dssp CCCSCEEEESCCSSCC----HHHHHHHHTTT--SCCCCEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHhhcc--CCEEEEEEE
Confidence 5679999999999875 89999999886 556666554
No 55
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.98 E-value=0.004 Score=47.88 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=29.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEe
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
...++|.|.|||.+.. +++|+++|+++ |.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~~~i~ 48 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYADVY 48 (108)
T ss_dssp SCCCEEEEESCCSSCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEeEEEEe
Confidence 4578999999999875 89999999987 457666554
No 56
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=96.97 E-value=0.0055 Score=47.55 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=65.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (381)
...++|.|.|||.+.. ++.|+++|+.+ |.|.++.+.+|
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~------------------------------------ 43 (115)
T 3lqv_A 6 EVNRILYIRNLPYKIT----AEEMYDIFGKY--GPIRQIRVGNT------------------------------------ 43 (115)
T ss_dssp TCCSEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEEECS------------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeC------------------------------------
Confidence 4578999999999875 88999999977 56888776631
Q ss_pred CCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEe
Q 016889 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVS 344 (381)
Q Consensus 267 ~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~ 344 (381)
....|.|||+|.+..+|..|.+.+..... ..+.|.
T Consensus 44 -------------------------------------------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 44 -------------------------------------------PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp -------------------------------------------TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred -------------------------------------------CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 01246899999999999999997765433 345677
Q ss_pred eCCCCCCeeeCCCCCChhhHHHHH
Q 016889 345 DAPESRELIWNNLNIKFFQRQIRH 368 (381)
Q Consensus 345 ~AP~P~DIiW~NL~~~~~~r~~R~ 368 (381)
.|-.+..- +|+.....+.-++.
T Consensus 81 ~a~~~~~~--~~~~~~~~~~~l~~ 102 (115)
T 3lqv_A 81 YYNANRAF--QKMDTKKKEEQLKL 102 (115)
T ss_dssp ECCHHHHT--TTSCHHHHHHHHHH
T ss_pred EecCChhh--hhhhHhHhHHHHHH
Confidence 77543332 45544444444433
No 57
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.96 E-value=0.0094 Score=43.96 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=29.6
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEe
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
....++|.|.|||.+.+ ++.|+++|+++ |.|.++.+.
T Consensus 6 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~~~~ 42 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACT----SQELRSLFERR--GRVIECDVV 42 (90)
T ss_dssp SCCSCCEEEESCCTTCC----HHHHHHHHHHH--SCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHcC--CCEEEEEEE
Confidence 35679999999999875 89999999988 457666553
No 58
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=96.96 E-value=0.0042 Score=49.52 Aligned_cols=43 Identities=9% Similarity=0.206 Sum_probs=33.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCCCCCeeeC
Q 016889 313 LGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPESRELIWN 355 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P~DIiW~ 355 (381)
.|.|||+|.+..+|..|.+.+....- ..+.|..|-.+++...+
T Consensus 72 rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 72 SGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp CCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 56899999999999999987765432 35678888877776654
No 59
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=96.95 E-value=0.007 Score=45.57 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=27.3
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeE
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~ 224 (381)
.+..++|.|.|||.+.+ ++.|+++|++. |.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~ 42 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVT----IESVADYFKQI--GIIKT 42 (99)
T ss_dssp CCCCSEEEEECCCSSCC----HHHHHHHHTTT--SCBCE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCEee
Confidence 36679999999999876 89999999877 45655
No 60
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=96.95 E-value=0.0047 Score=49.29 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=31.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 44 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~ 80 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTT----ERDLREVFSKY--GPIADVSIVY 80 (129)
T ss_dssp CCSSCBCEETCTTSCC----HHHHHHHHTTT--SCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 5578999999999876 88999999887 5688888775
No 61
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.95 E-value=0.0073 Score=46.35 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=29.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i 227 (381)
...++|.|.|||.++. ++.|+++|+++ |.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i 54 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIR----TKDIEDVFYKY--GAIRDIDL 54 (109)
T ss_dssp CCSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 4578999999999875 89999999987 56777654
No 62
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=96.94 E-value=0.0052 Score=47.28 Aligned_cols=38 Identities=5% Similarity=0.157 Sum_probs=30.8
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
....++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 23 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 60 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLNL 60 (110)
T ss_dssp BTTBEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEECCB
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 35678999999999875 89999999988 5677776553
No 63
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.94 E-value=0.003 Score=46.10 Aligned_cols=37 Identities=5% Similarity=0.094 Sum_probs=30.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.+ ++.|+++|+++ |.|.++.+.+
T Consensus 3 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~i~~~~i~~ 39 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTT----DQDLVKLCQPY--GKIVSTKAIL 39 (85)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHTTSTTT--SCEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 4578999999999876 88899999877 5688887664
No 64
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.94 E-value=0.012 Score=43.32 Aligned_cols=35 Identities=11% Similarity=0.315 Sum_probs=28.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i 227 (381)
...++|.|.|||.+.+ ++.|+++|+++ |.|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~~ 40 (90)
T 2dnq_A 6 SGMVKLFIGNLPREAT----EQEIRSLFEQY--GKVLECDI 40 (90)
T ss_dssp SCCEEEEEESCCSSCC----HHHHHHHHHTS--SCEEEEEE
T ss_pred CCCeEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEE
Confidence 5679999999999875 88999999877 45666554
No 65
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=96.93 E-value=0.0094 Score=51.74 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=72.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (381)
...+||.|.|||.+.+ ++.|+++|+++ |.|.+|.+.+|..
T Consensus 13 ~p~~tlfVgnLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~---------------------------------- 52 (213)
T 4f02_A 13 YPMASLYVGDLHPDVT----EAMLYEKFSPA--GPILSIRVCRDMI---------------------------------- 52 (213)
T ss_dssp --CCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEEecccC----------------------------------
Confidence 3468999999999876 89999999988 6799988876311
Q ss_pred CCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEe
Q 016889 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVS 344 (381)
Q Consensus 267 ~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~ 344 (381)
..+..|.|||+|.+..+|..|.+.+..... ....+.
T Consensus 53 ------------------------------------------tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 53 ------------------------------------------TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ------------------------------------------TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 113468999999999999999987654322 122344
Q ss_pred eCC--------CCCCeeeCCCCCChhhHHHHHHHH
Q 016889 345 DAP--------ESRELIWNNLNIKFFQRQIRHFFC 371 (381)
Q Consensus 345 ~AP--------~P~DIiW~NL~~~~~~r~~R~~~~ 371 (381)
.+. ....|.=.||.....+.-++.++.
T Consensus 91 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~ 125 (213)
T 4f02_A 91 WSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 125 (213)
T ss_dssp ECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHG
T ss_pred cccccccccccccccceECCcccccHHHHHHHHHh
Confidence 333 223577788887777777776553
No 66
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.0065 Score=47.00 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=31.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|+|.|||.+.. ++.|+++|+++ |.|.+|.+.+
T Consensus 13 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~i~~ 49 (114)
T 2do0_A 13 RLGSTVFVANLDYKVG----WKKLKEVFSMA--GVVVRADILE 49 (114)
T ss_dssp CCCSCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 4578999999999875 89999999877 5788887765
No 67
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.93 E-value=0.0069 Score=46.89 Aligned_cols=38 Identities=8% Similarity=0.272 Sum_probs=31.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|+|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 23 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~~ 60 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMD----EQELENMLKPF--GQVISTRILRD 60 (114)
T ss_dssp CCTTEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 4568999999999875 88999999876 56888877653
No 68
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=96.84 E-value=0.0062 Score=48.92 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=30.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.+ ++.|+++|+++ |.|.++.+.+
T Consensus 61 ~~~~~l~v~nlp~~~~----~~~l~~~f~~~--G~i~~v~i~~ 97 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVD----DKVLHAAFIPF--GDITDIQIPL 97 (140)
T ss_dssp SSCCEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEECCC
T ss_pred CCCcEEEEEeCCCCCC----HHHHHHHHHhc--CCEEEEEEee
Confidence 5678999999999876 89999999987 5677776654
No 69
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.84 E-value=0.0079 Score=45.63 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=31.8
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
....++|.|.|||.+.. ++.|+++|+++ | |.+|.+.+|
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g-i~~v~i~~~ 49 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTV----QGDIDAIFKDL--S-IRSVRLVRD 49 (103)
T ss_dssp SSSCEEEEEESCCTTCC----HHHHHHHTTTS--C-EEEEEEEEC
T ss_pred CCCCeEEEEeCCCCCCC----HHHHHHHHHhC--C-ceEEEEeec
Confidence 35679999999999876 89999999887 4 888887753
No 70
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=96.83 E-value=0.0099 Score=47.78 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=31.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|+|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 40 ~~~~~l~V~nLp~~~~----~~~l~~~F~~~--G~i~~v~i~~ 76 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVD----EVQLRQLFERY--GPIESVKIVC 76 (139)
T ss_dssp TTTSEEEEESCSTTCC----HHHHHHHHHHH--SCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEE
Confidence 4468999999999886 89999999988 5788888765
No 71
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.82 E-value=0.016 Score=50.01 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=72.2
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~ 267 (381)
..++|+|.|||.+++ ++.|+++|+++ |.|.+|.+.+|..
T Consensus 27 ~~~~l~V~nLp~~~t----~~~l~~~f~~~--G~i~~v~i~~~~~----------------------------------- 65 (216)
T 2qfj_A 27 IMSRVYVGSIYYELG----EDTIRQAFAPF--GPIKSIDMSWDSV----------------------------------- 65 (216)
T ss_dssp HHTEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEECCC-C-----------------------------------
T ss_pred cCCEEEEECCCCCCC----HHHHHHHHHhC--CCEEEEEEeecCC-----------------------------------
Confidence 468999999999875 89999999988 5688887764211
Q ss_pred CCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEee
Q 016889 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSD 345 (381)
Q Consensus 268 rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~ 345 (381)
..+..|.|||+|.+..+|..|.+.+..... ..+.+..
T Consensus 66 -----------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 66 -----------------------------------------TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp -----------------------------------------C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred -----------------------------------------CCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 113567999999999999999997654432 2344544
Q ss_pred CC-----------------CCCCeeeCCCCCChhhHHHHHHH
Q 016889 346 AP-----------------ESRELIWNNLNIKFFQRQIRHFF 370 (381)
Q Consensus 346 AP-----------------~P~DIiW~NL~~~~~~r~~R~~~ 370 (381)
+. ...-|+-.||.....+.-++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 146 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVF 146 (216)
T ss_dssp CSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHH
T ss_pred CCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHH
Confidence 32 23568888888777666666654
No 72
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.81 E-value=0.0022 Score=48.29 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=29.7
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCCCC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESR 350 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~ 350 (381)
++.+.|||+|.+..+|..|.+.+.... -..+.|+.|-.|.
T Consensus 55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 356899999999999999998766442 2345677776554
No 73
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=96.81 E-value=0.0051 Score=52.03 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=62.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (381)
....+|.|.|||.++. ++.|+++|+++ |.|.+|.+.+|.
T Consensus 86 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~I~~v~i~~d~----------------------------------- 124 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVS----DADIQELFAEF--GTLKKAAVDYDR----------------------------------- 124 (177)
T ss_dssp TTCEEEEEECCCSCCC----HHHHHHHHHHT--SCCSEEEECCCT-----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECC-----------------------------------
Confidence 4568999999999876 89999999987 567777765431
Q ss_pred CCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEe
Q 016889 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVS 344 (381)
Q Consensus 267 ~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~ 344 (381)
.....|.|||+|.+..+|..|.+.+..... ..+.|+
T Consensus 125 ------------------------------------------~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 125 ------------------------------------------SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp ------------------------------------------TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred ------------------------------------------CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 013467899999999999999987654432 346677
Q ss_pred eCCCCCCeee
Q 016889 345 DAPESRELIW 354 (381)
Q Consensus 345 ~AP~P~DIiW 354 (381)
.|..+....|
T Consensus 163 ~a~~~~~~~~ 172 (177)
T 2f3j_A 163 LVASQIDLEH 172 (177)
T ss_dssp EESSGGGGCC
T ss_pred EecCCCCCCC
Confidence 7765544433
No 74
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.80 E-value=0.0067 Score=47.15 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=31.4
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
....++|+|.|||.++. ++.|+++|+++ |.|.+|.+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 51 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTT----DASLRKYFEGF--GDIEEAVVIT 51 (116)
T ss_dssp SCSSSEEEEECCCSSCC----HHHHHHHHHTT--SCEEEEEESC
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeeEEEEEE
Confidence 35679999999999876 89999999987 5688877664
No 75
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.78 E-value=0.0045 Score=47.28 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=28.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeE-EEEe
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR-SMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~-v~i~ 228 (381)
...++|.|.|||.+.+ ++.|+++|+++ |.|.+ |.+.
T Consensus 13 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~v~~~v~i~ 49 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCS----KEEIVQFFSGL--EIVPNGMTLP 49 (104)
T ss_dssp SCCCEEEEESCCTTCC----HHHHHHHTTTC--CEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCcceeEEEE
Confidence 5679999999999876 89999999876 55654 4444
No 76
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=96.77 E-value=0.011 Score=50.08 Aligned_cols=103 Identities=13% Similarity=0.182 Sum_probs=71.2
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPE 265 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~ 265 (381)
....++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+|..
T Consensus 10 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~~~--------------------------------- 50 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETT----DESLRSHFEQW--GTLTDCVVMRDPN--------------------------------- 50 (196)
T ss_dssp CGGGGEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEECTT---------------------------------
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEEcCC---------------------------------
Confidence 35679999999999875 89999999988 5688888775321
Q ss_pred CCCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC-CCeEEe
Q 016889 266 GTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV-DTWTVS 344 (381)
Q Consensus 266 ~~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~-~~~~v~ 344 (381)
.....|.|||+|.+..+|..|.+.....-. ..+.+.
T Consensus 51 -------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 51 -------------------------------------------TKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 87 (196)
T ss_dssp -------------------------------------------TCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEE
T ss_pred -------------------------------------------CCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeee
Confidence 013467999999999999999876211101 112233
Q ss_pred eCC------------CCCCeeeCCCCCChhhHHHHHHH
Q 016889 345 DAP------------ESRELIWNNLNIKFFQRQIRHFF 370 (381)
Q Consensus 345 ~AP------------~P~DIiW~NL~~~~~~r~~R~~~ 370 (381)
.|. .+..|.=.||.....+.-++.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F 125 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHH
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHH
Confidence 332 22557788888777777666654
No 77
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.77 E-value=0.007 Score=44.73 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=30.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. ++.|+++|+++ .|.+|.+.+|
T Consensus 8 ~~~~~l~v~nLp~~~t----~~~l~~~F~~~---~i~~v~i~~~ 44 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVT----EKNVMEFLAPL---KPVAIRIVRN 44 (91)
T ss_dssp CCCCEEEEECCCSSCC----HHHHHHHHTTS---CCSEEEEEEC
T ss_pred CCccEEEEECCCCCCC----HHHHHHHHhhC---CceEEEEEEC
Confidence 5679999999999876 88999999876 4777777653
No 78
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=96.77 E-value=0.014 Score=44.18 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=27.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~ 226 (381)
...++|.|.|||.+.+ ++.|+++|+++ |.|.+|.
T Consensus 9 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~ 42 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVT----EEILEKAFSQF--GKLERVK 42 (103)
T ss_dssp CCCCCEEEECCCTTCC----HHHHHHHHHHH--SCEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEE
Confidence 4568999999999875 89999999987 4566654
No 79
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.75 E-value=0.015 Score=43.43 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=27.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~ 226 (381)
+..++|.|.|||.+++ ++.|+++|+++ |.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~ 48 (97)
T 1why_A 15 NPTTRLWVGGLGPNTS----LAALAREFDRF--GSIRTID 48 (97)
T ss_dssp CCCSCEEEECCCSSCC----HHHHHHHHHTT--SCEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeeEEE
Confidence 5568999999999875 89999999877 4566654
No 80
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.72 E-value=0.0096 Score=44.79 Aligned_cols=37 Identities=22% Similarity=0.156 Sum_probs=27.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCCCC
Q 016889 314 GAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPESR 350 (381)
Q Consensus 314 ~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P~ 350 (381)
+.|||+|.+..+|..|.+.+....- ..+.|..|-.+.
T Consensus 52 g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 52 GFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 6899999999999999987765432 346677775443
No 81
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=96.70 E-value=0.003 Score=46.65 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=28.2
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 190 ~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 2 ~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 35 (90)
T 2ki2_A 2 RNIYVGNLVYSAT----SEQVKELFSQF--GKVFNVKLIY 35 (90)
T ss_dssp EEEEEEEECTTSS----HHHHTTTHHHH--TCCSEEEECC
T ss_pred cEEEECCCCCCCC----HHHHHHHHHhc--CCEEEEEEEE
Confidence 6899999999876 88999999987 5677777654
No 82
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=96.68 E-value=0.0084 Score=44.81 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=29.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCCCCCe
Q 016889 313 LGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPESREL 352 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P~DI 352 (381)
.|.|||+|.+..+|..|.+.+....- ..+.|..|-.+.+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 46899999999999999987665432 34567777655554
No 83
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.66 E-value=0.013 Score=44.81 Aligned_cols=37 Identities=11% Similarity=0.263 Sum_probs=29.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEe
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
...++|.|.|||.+.. ++.|+++|+++.+ .|.++.+.
T Consensus 6 ~~~~~l~V~nLp~~~t----~~~l~~~f~~~G~-~v~~v~i~ 42 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKK----REEILEEIAKVTE-GVLDVIVY 42 (109)
T ss_dssp CCSEEEEEECCCTTSC----HHHHHHHHHHHST-TEEEEECC
T ss_pred cCCCEEEEeCCCCcCC----HHHHHHHHHHhcC-CceEEEEE
Confidence 4579999999999875 8999999998843 27776554
No 84
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=96.65 E-value=0.0063 Score=46.93 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=29.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|+|.|||.+.+ ++.|+++|+++ |.|.+|.+.+
T Consensus 23 ~~~~~lfV~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~~ 59 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMR 59 (109)
T ss_dssp ---CCEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHcc--CCeEEEEEEE
Confidence 5579999999999876 89999999887 6788887765
No 85
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=96.65 E-value=0.0094 Score=46.39 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=26.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i 227 (381)
...++|.|.|||.+.. +++|+++|+++ |.|.++.+
T Consensus 14 r~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~~~i 48 (115)
T 3beg_B 14 RSENRVVVSGLPPSGS----WQDLKDHMREA--GDVCYADV 48 (115)
T ss_dssp ---CCEEEEECCSSCC----TTHHHHHHGGG--SCEEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEE
Confidence 3468999999999876 78899999877 45666554
No 86
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.64 E-value=0.011 Score=45.51 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=26.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 347 (381)
+..|.|||+|.+..+|..|.+.+....- ..+.|..|-
T Consensus 63 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 63 KPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 101 (113)
T ss_dssp SBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred CeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECC
Confidence 4578999999999999999987654422 234565553
No 87
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.64 E-value=0.021 Score=42.54 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=27.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v 225 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~~ 45 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQ----WEVLDSLLVQY--GVVESC 45 (96)
T ss_dssp CSCCCEEEEEECSSSC----HHHHHHHHHHH--SCEEEE
T ss_pred CCCCEEEEEcCCCCCC----HHHHHHHHHhc--CCeEEE
Confidence 4578999999999876 88999999988 557766
No 88
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=96.60 E-value=0.015 Score=44.74 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=26.3
Q ss_pred CCcceEEEecCCCC-CCCCChHHHHHHHHHhhCCCceeEEE
Q 016889 187 PQQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSM 226 (381)
Q Consensus 187 ~~~~TvlV~~IP~~-~~~~~~~~~L~~~f~~~~p~~V~~v~ 226 (381)
...++|.|.|||.+ .. ++.|+++|+++ |.|.+|.
T Consensus 25 ~~~~~l~V~nl~~~~~t----~~~l~~~F~~~--G~v~~v~ 59 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVK----KSDVETIFSKY--GRVAGCS 59 (110)
T ss_dssp TCSSEEEECSCCCSSCC----HHHHHHHHGGG--SCCSEEE
T ss_pred CCCcEEEEeCCCcccCC----HHHHHHHHHhC--CCeEEEE
Confidence 34589999999998 54 89999999877 4455544
No 89
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.0048 Score=47.97 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=25.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY 223 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~ 223 (381)
...++|.|.|||.+.+ ++.|+++|+++ |.|.
T Consensus 6 ~~~~~lfVgnLp~~~t----e~~L~~~F~~~--G~i~ 36 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDID----EDEITASFRRF--GPLV 36 (114)
T ss_dssp SCCCCEEEECCCTTCC----HHHHHHHTTTT--CCCC
T ss_pred CCCCEEEEcCCCCCCC----HHHHHHHHHhc--CCEE
Confidence 4579999999999876 89999999877 4454
No 90
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.56 E-value=0.0097 Score=46.03 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=27.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i 227 (381)
.+.++|+|.|||.+.+ ++.|+++|+++ |.|.+|.+
T Consensus 8 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~i 42 (111)
T 1whx_A 8 RSKTVILAKNLPAGTL----AAEIQETFSRF--GSLGRVLL 42 (111)
T ss_dssp EEEEEEEEESCCTTCC----HHHHHHHHHTT--SCEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEE
Confidence 3568999999999875 89999999987 55666543
No 91
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=96.56 E-value=0.0034 Score=46.83 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=22.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhh
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~ 217 (381)
+..++|.|.|||.+.. ++.|+++|+++
T Consensus 13 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~ 39 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVS----IDEILDFFYGY 39 (95)
T ss_dssp --CEEEEEECCCTTCC----HHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc
Confidence 5579999999999876 88999999866
No 92
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=96.55 E-value=0.0042 Score=47.01 Aligned_cols=36 Identities=11% Similarity=0.359 Sum_probs=27.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...+||.|.|||.+.. ++.|+++|+++ | |.+|.+.+
T Consensus 17 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G-i~~v~i~~ 52 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVT----EESIKEFFRGL--N-ISAVRLPR 52 (100)
T ss_dssp ---CEEEESCCSSCCS----SSHHHHHSCSS--C-EEEEECSC
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--C-CeEEEEEe
Confidence 5679999999999876 68899999876 5 88877654
No 93
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=96.54 E-value=0.019 Score=47.51 Aligned_cols=37 Identities=3% Similarity=0.132 Sum_probs=31.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 93 ~~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~~~~ 129 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCT----ENDIRVMFSSF--GQIEECRILR 129 (175)
T ss_dssp GGGSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCeEEEcCCCCcCC----HHHHHHHHHhC--CCEEEEEEEE
Confidence 4678999999999875 89999999987 5688888775
No 94
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=96.53 E-value=0.0067 Score=43.83 Aligned_cols=37 Identities=11% Similarity=0.266 Sum_probs=26.4
Q ss_pred cceEEEecCCCCCCCCC--hHHHHHHHHHhhCCCceeEEEE
Q 016889 189 QFAVLVRDLPDLPKGQS--RKEQVDSYFKAIYPDTFYRSMV 227 (381)
Q Consensus 189 ~~TvlV~~IP~~~~~~~--~~~~L~~~f~~~~p~~V~~v~i 227 (381)
+++|.|.|||....++. .++.|+++|+++ |.|.++.+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i 39 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFY 39 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEe
Confidence 37899999998774210 268899999877 55766553
No 95
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.52 E-value=0.0061 Score=47.16 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=28.8
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
..++|.|.|||.+.+ +++|+++|+.+ .|.+|.+++
T Consensus 15 ~~~~v~V~nLp~~~t----e~dl~~~F~~~---~v~~v~i~~ 49 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAM----ENDVRDFFHGL---RVDAVHLLK 49 (109)
T ss_dssp HHHEEEEECCCSSCC----HHHHHHHTTTS---CCCEEEECC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHhccC---CeeEEEEEE
Confidence 458999999999876 89999999876 367777764
No 96
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.49 E-value=0.013 Score=48.09 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=30.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 68 ~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~v~~~~i~~ 104 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIPR 104 (158)
T ss_dssp CBCCEEEEESCCTTCC----HHHHHHHHHHH--SCEEEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEee
Confidence 4568999999999876 89999999988 5687776654
No 97
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=96.48 E-value=0.017 Score=47.95 Aligned_cols=38 Identities=5% Similarity=0.157 Sum_probs=31.4
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
....++|+|.|||..+. ++.|+++|+++ |.|.+|.+..
T Consensus 69 ~~~~~~l~V~nLp~~~t----~~~L~~~F~~~--G~i~~v~i~~ 106 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQ----EDEIQEKFCDY--GEIKNIHLNL 106 (165)
T ss_dssp CC-CEEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHhhcC--CCEEEEEEEe
Confidence 35568999999999875 89999999988 6788888775
No 98
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.47 E-value=0.0047 Score=47.11 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=28.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|+|.|||.+.+ +++|+++|+++. +.+|.+++
T Consensus 13 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~G---~~~v~i~~ 48 (102)
T 1wez_A 13 TTGHCVHMRGLPYRAT----ENDIYNFFSPLN---PMRVHIEI 48 (102)
T ss_dssp SSSCEEEEESCCTTCC----HHHHHHSSCSCC---CSEEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHcC---ceEEEEEE
Confidence 4578999999999876 899999998763 33777664
No 99
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=96.47 E-value=0.013 Score=45.46 Aligned_cols=34 Identities=9% Similarity=0.130 Sum_probs=26.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v 225 (381)
+..++|.|.|||.+.+ ++.|+++|++..+ .|..+
T Consensus 26 ~~~~~l~VgnLp~~~t----e~dL~~~F~~~G~-~v~~v 59 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCS----WQDLKDLARENSL-ETTFS 59 (111)
T ss_dssp CCCEEEEEECSSCCCC----HHHHHHHHHHHTC-CCSEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHHhCC-eeEEE
Confidence 5578999999999876 8999999998842 45443
No 100
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=96.45 E-value=0.016 Score=47.90 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=31.4
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
..++|.|.|||.+.+ ++.|+++|+++.+..|.+|.+++|
T Consensus 54 ~~~~lfVgnLp~~~t----e~~L~~~F~~~G~i~v~~v~i~~d 92 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTT----DQQLIQVIRSIGVYDVVELKFAEN 92 (156)
T ss_dssp --CEEEEECCCTTCC----HHHHHHHHHHTTCCCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHHCCccEEEEEEEec
Confidence 468999999999886 899999999885437888888764
No 101
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=96.44 E-value=0.0074 Score=48.53 Aligned_cols=37 Identities=8% Similarity=0.054 Sum_probs=29.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...+||.|.|||.+.+ ++.|+++|+++ |.|.+|.+.+
T Consensus 45 ~~~~~l~V~nLp~~~t----e~~L~~~F~~~--G~i~~v~i~~ 81 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTS----PDTLRRVFEKY--GRVGDVYIPR 81 (135)
T ss_dssp GGCCCEEEECCCSSCH----HHHHHHHHGGG--SCCSEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 4568999999999875 89999999987 4677766553
No 102
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.42 E-value=0.0039 Score=48.50 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=28.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCce-eEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF-YRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V-~~v~i~~ 229 (381)
...++|+|.|||.+.+ ++.|+++|+++ |.| .+|.+++
T Consensus 13 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--g~v~~~v~i~~ 50 (114)
T 2cpy_A 13 SAKVCAHITNIPFSIT----KMDVLQFLEGI--PVDENAVHVLV 50 (114)
T ss_dssp SCCCEEEEESCCTTSC----HHHHHHHTTTS--CCCSTTEEECC
T ss_pred CCccEEEEeCcCCcCC----HHHHHHHHHhC--CCcCCeEEEEE
Confidence 4579999999999876 88999999876 555 4555543
No 103
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.41 E-value=0.033 Score=41.56 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=28.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCCC
Q 016889 312 QLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPES 349 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P 349 (381)
..|.|||+|.+..+|..|.+.+....- ..+.|..|-.+
T Consensus 55 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 55 PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 357899999999999999987765432 34667776443
No 104
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.02 Score=42.73 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCcceEEEecCCC-CCCCCChHHHHHHHHHhhCCCceeEEEE
Q 016889 187 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (381)
Q Consensus 187 ~~~~TvlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~V~~v~i 227 (381)
+..++|.|.|||. +.+ ++.|+++|+++ |.|.++.+
T Consensus 8 ~~~~~l~V~nlp~~~~t----~~~l~~~F~~~--G~v~~v~i 43 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQINI 43 (96)
T ss_dssp -CCEEEEEESSTTSCCC----HHHHHHHHTTT--CCCCEEEE
T ss_pred CCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEE
Confidence 5679999999997 765 89999999876 44555443
No 105
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.39 E-value=0.03 Score=45.60 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=29.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEe
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
...++|.|.|||.+.+ ++.|+++|+++ |.|.+|.+.
T Consensus 71 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~ 106 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGN----KTELERAFGYY--GPLRSVWVA 106 (150)
T ss_dssp TTSCEEEEESCCSCCS----CHHHHHHHHHH--SCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhh--CCEEEEEEe
Confidence 5679999999999886 68899999988 567777655
No 106
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=96.39 E-value=0.024 Score=46.63 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 87 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 124 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTIT----DDQLDTIFGKY--GSIVQKNILRD 124 (168)
T ss_dssp TTTCEEEEESCCTTCC----HHHHHHHHTSS--SCEEEEEEEEC
T ss_pred CCCCCEEEeCCCCCCC----HHHHHHhhhcC--CcEEEEEEEEc
Confidence 4578999999999875 89999999876 56888877753
No 107
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.35 E-value=0.014 Score=45.33 Aligned_cols=36 Identities=8% Similarity=0.073 Sum_probs=28.7
Q ss_pred CCcceEEEecCCCC-CCCCChHHHHHHHHHhhCCCceeEEEEe
Q 016889 187 PQQFAVLVRDLPDL-PKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~-~~~~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
...++|.|.|||.+ .+ ++.|+++|+++ |.|.+|.+.
T Consensus 23 ~p~~~l~V~NLp~~~~t----e~~L~~lF~~f--G~V~~v~i~ 59 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYS----DSAVLKLAEPY--GKIKNYILM 59 (112)
T ss_dssp CCCCEEEEESCCCSSCC----SHHHHTTTTTT--SCCSEEEEE
T ss_pred CCCCEEEEeCCCCccCC----HHHHHHHHHhc--CCEEEEEEe
Confidence 45789999999997 65 68899999876 567777653
No 108
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.33 E-value=0.0056 Score=47.96 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=29.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCC-CceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p-~~V~~v~i~~ 229 (381)
...++|+|.|||.+.+ ++.|+++|+.+.+ +.|.+|.+++
T Consensus 15 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~G~~~~v~~v~i~~ 54 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCS----IEDVQNFLSDCTIHDGVAGVHFIY 54 (118)
T ss_dssp CCCCEEEEESCCTTCC----HHHHHHHTTTSCBTTGGGGEEEEE
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHcCCccCceeEEEEE
Confidence 4568999999999886 8899999987643 1266666654
No 109
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=96.32 E-value=0.031 Score=50.11 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=46.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCCCCCeeeCCCCCChhhHHHHHHHH
Q 016889 314 GAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPESRELIWNNLNIKFFQRQIRHFFC 371 (381)
Q Consensus 314 ~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~ 371 (381)
|.|||+|.+..+|..|.+.+..... ..+.+..|....-|.=.||.....+.-++.++.
T Consensus 59 g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F~ 118 (261)
T 3sde_A 59 GFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAFS 118 (261)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHHG
T ss_pred cEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHHH
Confidence 6899999999999999987654432 346688888888899999988877777776653
No 110
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.32 E-value=0.0056 Score=47.32 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=30.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHH---HHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVD---SYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~---~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. ++.|+ ++|+++ |.|.+|.+.+|
T Consensus 13 ~~~~~l~V~nLp~~~~----~~~l~~~~~~F~~~--G~i~~v~i~~~ 53 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLA----DPEVLKRPEYFGKF--GKIHKVVINNS 53 (111)
T ss_dssp CCSSCEEEEEECTTTC----CHHHHHSTTTTTTT--SCEEEEEEECC
T ss_pred cCCCEEEEECCCCCCC----HHHHHHHHHHhhcc--CCEEEEEEecC
Confidence 5678999999999887 57787 888877 67888887653
No 111
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=96.31 E-value=0.025 Score=43.37 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=26.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSM 226 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~ 226 (381)
...++|.|.|||.+.+ ++.|+++|+++ |.|.++.
T Consensus 29 ~~~~~l~V~nLp~~~t----~~~L~~~F~~~--G~i~~v~ 62 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQ----ESELNEIFGPF--GPMKEVK 62 (108)
T ss_dssp CSCSEEEECSSCTTCC----HHHHHHHHTTT--SCCCEEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCEEEEE
Confidence 5679999999999876 88899999876 4454443
No 112
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=96.28 E-value=0.037 Score=45.25 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=30.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 86 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~ 122 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMT----QKELEQLFSQY--GRIITSRILV 122 (167)
T ss_dssp GTTCEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred CCCCcEEECCCCCcCC----HHHHHHHHHhc--CCEeEEEEEe
Confidence 4568999999999875 89999999987 5688887775
No 113
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.28 E-value=0.0058 Score=50.46 Aligned_cols=101 Identities=10% Similarity=0.167 Sum_probs=66.9
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 016889 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGTR 268 (381)
Q Consensus 189 ~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~r 268 (381)
+++|.|.|||.+.+ ++.|+++|+++ |.|.++.+.+|..
T Consensus 3 ~~~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~------------------------------------ 40 (167)
T 2cjk_A 3 SCKMFIGGLNWDTT----EDNLREYFGKY--GTVTDLKIMKDPA------------------------------------ 40 (167)
T ss_dssp GGEEEECSCCTTCC----HHHHHHHHTTT--CCEEEEECCCCTT------------------------------------
T ss_pred CcEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEECCC------------------------------------
Confidence 68999999999886 89999999987 5688877553210
Q ss_pred CcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCCCCeEEeeCC-
Q 016889 269 PTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAP- 347 (381)
Q Consensus 269 p~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~AP- 347 (381)
...+.|.|||+|.+..+|..|.+....-+-..+.+..+.
T Consensus 41 ----------------------------------------~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 41 ----------------------------------------TGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIP 80 (167)
T ss_dssp ----------------------------------------TSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCC
T ss_pred ----------------------------------------CCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccc
Confidence 123567899999999999999884211111112233332
Q ss_pred -----CCCCeeeCCCCCChhhHHHHHHHH
Q 016889 348 -----ESRELIWNNLNIKFFQRQIRHFFC 371 (381)
Q Consensus 348 -----~P~DIiW~NL~~~~~~r~~R~~~~ 371 (381)
.+..|.=.||.....+.-++.++.
T Consensus 81 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~ 109 (167)
T 2cjk_A 81 RDEQDKTGKIFVGGIGPDVRPKEFEEFFS 109 (167)
T ss_dssp HHHHHHCEEEEEEEECTTCCHHHHHHHHH
T ss_pred hhhccCCCeEEECCCCCCCCHHHHHHHHH
Confidence 233566677776666666665543
No 114
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=96.24 E-value=0.012 Score=50.42 Aligned_cols=35 Identities=6% Similarity=0.204 Sum_probs=30.2
Q ss_pred cceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 189 QFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 189 ~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
.+||.|.|||.+.+ ++.|+++|+++ |.|.+|.+++
T Consensus 109 ~~~l~V~nLp~~~t----~~~L~~~F~~~--G~v~~v~i~~ 143 (193)
T 2voo_A 109 NRSVYIKGFPTDAT----LDDIKEWLEDK--GQVLNIQMRR 143 (193)
T ss_dssp HTEEEEECCCTTCC----HHHHHHHHTTS--CCEEEEEEEE
T ss_pred cCEEEecCCCCcCC----HHHHHHHHhcC--CCEEEEEEEE
Confidence 48999999999865 89999999987 6688888876
No 115
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=96.24 E-value=0.029 Score=48.22 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=31.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. +++|+++|+++ |.|.++.+.+|
T Consensus 123 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 160 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLS----DDDIKSVFEAF--GKIKSATLARD 160 (216)
T ss_dssp TTSCEEEEECCCTTCC----HHHHHHHHTTS--SCEEEEEEEEC
T ss_pred CCCcEEEEeCCCCcCC----HHHHHHHHhcc--CCeeEEEEEec
Confidence 3468999999999875 89999999877 67888888764
No 116
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=96.23 E-value=0.0067 Score=48.95 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=29.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCC-ceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~-~V~~v~i~~ 229 (381)
...++|.|.|||.+.+ ++.|+++|+++.+- .|.+|.+++
T Consensus 42 ~~~~~lfVgnLp~~~t----e~dL~~~F~~~G~v~~v~~v~i~~ 81 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCS----VEDVQNFLSDCTIHDGAAGVHFIY 81 (136)
T ss_dssp CTTCEEEEESCCTTCC----HHHHHHHTTTCCCSSSSTTEEEEE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHhCCcCceeEEEEEE
Confidence 4578999999999886 89999999886321 166666664
No 117
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.22 E-value=0.02 Score=43.14 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=27.9
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCCC
Q 016889 312 QLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPES 349 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P 349 (381)
..+.|||+|.+..+|..|.+.+....- ..+.|+.|-.+
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 53 SKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp EEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 467999999999999999987665432 23556666443
No 118
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=96.13 E-value=0.041 Score=49.70 Aligned_cols=59 Identities=22% Similarity=0.212 Sum_probs=46.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCCCCCeeeCCCCCChhhHHHHHHHH
Q 016889 313 LGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIWNNLNIKFFQRQIRHFFC 371 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~ 371 (381)
.|.|||+|.+..+|..|.+.+.... ...+.+..+|...-|.=.||.....+.-++.++.
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 117 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVR 117 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHHG
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHHH
Confidence 3589999999999999998765443 2345688888888899999988877777776653
No 119
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=96.10 E-value=0.065 Score=46.86 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=30.2
Q ss_pred CCcceEEEecCCC-CCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
+..+||+|.|||. +.. ++.|+++|+++ |.|.+|.+.+
T Consensus 32 ~~~~~l~V~nLp~~~~t----e~~L~~~F~~~--G~i~~v~i~~ 69 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKILF 69 (229)
T ss_dssp CCCSEEEEESCCTTTCC----HHHHHHHHHHH--TCEEEEEECC
T ss_pred CCCCEEEEeCCCcccCC----HHHHHHHHHhC--CCeEEEEEEE
Confidence 5679999999999 665 89999999988 5687776653
No 120
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=96.06 E-value=0.0096 Score=47.34 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=28.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCcee--EEEEee
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFY--RSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~--~v~i~~ 229 (381)
...++|+|.|||.+.+ ++.|+++|+++ + |. +|.+++
T Consensus 40 ~~~~~lfVgnLp~~~t----e~dL~~~F~~~--~-i~~~~v~i~~ 77 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCT----KEEIVQFFSGL--E-IVPNGITLPV 77 (126)
T ss_dssp SSCCEEEEECCCTTCC----HHHHHHHTTTS--C-EEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhcC--C-ceeeEEEEEE
Confidence 4578999999999886 89999999876 3 44 555543
No 121
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=96.02 E-value=0.043 Score=41.92 Aligned_cols=84 Identities=8% Similarity=0.007 Sum_probs=58.4
Q ss_pred CCcceEEEecCCC--CCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 016889 187 PQQFAVLVRDLPD--LPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKP 264 (381)
Q Consensus 187 ~~~~TvlV~~IP~--~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~ 264 (381)
..+++|.+.|+.. ++.+ ..++.|++.|+++ |.|.+|.+++|...
T Consensus 6 ~~s~~l~l~Nm~~~~~l~d-d~~~dl~~~f~~~--G~V~~v~i~~~~~~------------------------------- 51 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDE-DLEVETKEECEKY--GKVGKCVIFEIPGA------------------------------- 51 (105)
T ss_dssp SCCSEEEEESSSCSCCC----CHHHHHHHGGGG--SCEEEEEEEECSSC-------------------------------
T ss_pred CCCCEEEEEcCCChHHhhH-HHHHHHHHHHHhc--CCEEEEEEecCCCC-------------------------------
Confidence 4578999999963 3332 3378999999877 67999988764210
Q ss_pred CCCCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeE
Q 016889 265 EGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWT 342 (381)
Q Consensus 265 ~~~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~ 342 (381)
..++.|.|||+|.+..+|..|.+.+....- ....
T Consensus 52 --------------------------------------------~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~ 87 (105)
T 2pe8_A 52 --------------------------------------------PDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK 87 (105)
T ss_dssp --------------------------------------------CTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred --------------------------------------------CCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence 012468999999999999999998765432 2345
Q ss_pred EeeCCC
Q 016889 343 VSDAPE 348 (381)
Q Consensus 343 v~~AP~ 348 (381)
+..|++
T Consensus 88 v~~a~~ 93 (105)
T 2pe8_A 88 ACFYNL 93 (105)
T ss_dssp EEECCH
T ss_pred EEEcCH
Confidence 666653
No 122
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=95.98 E-value=0.02 Score=50.52 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=31.0
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
..++|+|.|||.+++ ++.|+++|+++.+..|.+|.+.+|
T Consensus 67 ~~~~lfVgnL~~~~t----e~~L~~~F~~~G~~~v~~v~i~~d 105 (229)
T 3q2s_C 67 KRIALYIGNLTWWTT----DEDLTEAVHSLGVNDILEIKFFEN 105 (229)
T ss_dssp --CEEEEESCCTTCC----HHHHHHHHHTTTCCCEEEEEEEEC
T ss_pred CccEEEEeCCCCCCC----HHHHHHHHHHHCCcceEEEEEEec
Confidence 467999999999886 899999999873227999888864
No 123
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=95.91 E-value=0.012 Score=45.15 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=27.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCC-CceeEEEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYP-DTFYRSMV 227 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p-~~V~~v~i 227 (381)
...++|.|.|||.+.+ ++.|+++|+.+.+ |.|.+|.+
T Consensus 9 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~g~~~~v~~v~i 46 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCT----MEDVLNFFSDCRIRNGENGIHF 46 (107)
T ss_dssp SSCCEEEEECCCSSCC----SHHHHHHTTTSCBTTTTTTEEC
T ss_pred CCccEEEEeCCCCCCC----HHHHHHHHHhcCCcCCcceEEE
Confidence 5679999999999886 7889999987632 22444443
No 124
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.037 Score=45.21 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=31.5
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 85 ~~~~~l~v~nl~~~~t----~~~l~~~f~~~--G~i~~~~i~~~ 122 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVD----DETLRNAFKDF--PSYLSGHVMWD 122 (166)
T ss_dssp TTCEEEEEESCCTTCC----HHHHHHHHTTS--TTEEEEEEEEC
T ss_pred CCCceEEECCCCCCCC----HHHHHHHHhcc--CCeeEEEEEec
Confidence 5578999999999885 89999999876 67888887753
No 125
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=95.84 E-value=0.072 Score=45.18 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=27.3
Q ss_pred CcceEEEecCCC-CCCCCChHHHHHHHHHhhCCCceeEEEEe
Q 016889 188 QQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 188 ~~~TvlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
++++|+|.|||. +.. ++.|+++|+++ |.|.+|.+.
T Consensus 2 ~~~~l~v~nlp~~~~~----~~~l~~~F~~~--G~i~~v~i~ 37 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVT----PQSLFILFGVY--GDVQRVKIL 37 (198)
T ss_dssp CCCEEEEECCCSSSCC----HHHHHHHHHTT--CCCSEEECS
T ss_pred CCcEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEEE
Confidence 468999999999 665 89999999877 446665543
No 126
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=95.81 E-value=0.069 Score=39.39 Aligned_cols=35 Identities=6% Similarity=-0.072 Sum_probs=29.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i 227 (381)
..+..++|.||+.+.+ ++.|++.|.++ |.|.++++
T Consensus 5 ~~~~wL~VgNL~~~~t----e~~L~~lF~q~--G~V~~~~l 39 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQID----GPTLRTLCMQH--GPLVSFHP 39 (89)
T ss_dssp CCCCEEEEECCCTTCC----CHHHHHHHHHH--SCEEEEEE
T ss_pred CccceEEEeCCCccCC----HHHHHHHHHhh--CCEEEEEE
Confidence 5678999999999886 79999999999 45777654
No 127
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.79 E-value=0.038 Score=41.52 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=26.8
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 347 (381)
+..+.|||+|.+..+|..|.+.+....- ..+.|+.|-
T Consensus 51 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 51 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 3467999999999999999997654322 235566663
No 128
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.76 E-value=0.086 Score=40.51 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=27.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 347 (381)
+..|.|||+|.+..+|..|.+.+....- ..+.|..|-
T Consensus 65 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 65 RMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp SSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 4568999999999999999987655432 345566653
No 129
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=95.74 E-value=0.023 Score=42.77 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=26.6
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 347 (381)
++.|.|||+|.+..+|..|.+ +....- ..+.|..|-
T Consensus 56 ~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 56 TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 457899999999999999998 554332 345566663
No 130
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=95.69 E-value=0.04 Score=45.41 Aligned_cols=38 Identities=16% Similarity=0.356 Sum_probs=31.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|+|.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 92 ~~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~v~~v~i~~~ 129 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKD 129 (172)
T ss_dssp TTTTCEEEECCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEEcCCCcCC----HHHHHHHHHhc--CCceEEEEEec
Confidence 4468999999999875 89999999977 57888877653
No 131
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.57 E-value=0.048 Score=52.88 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=58.8
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEGT 267 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~~ 267 (381)
...||+|.|||..++ ++.|.++|+++ |.|.+|.++.|..
T Consensus 101 ~~~~lfV~nL~~~~t----e~~L~~~F~~~--G~I~~v~i~~d~~----------------------------------- 139 (437)
T 3pgw_S 101 AFKTLFVARVNYDTT----ESKLRREFEVY--GPIKRIHMVYSKR----------------------------------- 139 (437)
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEeeccCC-----------------------------------
Confidence 357999999999875 89999999987 6788877765310
Q ss_pred CCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCCC--CeEEee
Q 016889 268 RPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVD--TWTVSD 345 (381)
Q Consensus 268 rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~--~~~v~~ 345 (381)
..++.|.|||+|.+..+|..|.+.+...... .+.|..
T Consensus 140 -----------------------------------------tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 140 -----------------------------------------SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred -----------------------------------------CCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 1134679999999999999999887654332 345666
Q ss_pred CCC
Q 016889 346 APE 348 (381)
Q Consensus 346 AP~ 348 (381)
|..
T Consensus 179 a~~ 181 (437)
T 3pgw_S 179 ERG 181 (437)
T ss_pred eCC
Confidence 653
No 132
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.57 E-value=0.02 Score=42.84 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=35.4
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCCCCCeee
Q 016889 314 GAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPESRELIW 354 (381)
Q Consensus 314 ~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P~DIiW 354 (381)
|.|||+|.++.+|..|.+.+..... ..+.+..|+..+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 8999999999999999988776654 3588999999999863
No 133
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=95.55 E-value=0.1 Score=44.91 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=28.5
Q ss_pred CCcceEEEecCC-CCCCCCChHHHHHHHHHhhCCCceeEEEEe
Q 016889 187 PQQFAVLVRDLP-DLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP-~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
+...||+|.||| .+.+ ++.|.+.|+++ |.|.+|.+.
T Consensus 2 ~~~~~l~V~nL~~~~~~----~~~L~~~F~~~--G~v~~v~i~ 38 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMN----CDRVFNVFCLY--GNVEKVKFM 38 (205)
T ss_dssp CCCSEEEEECCCTTTCC----HHHHHHHHTTT--SCEEEEEEC
T ss_pred CCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 456899999999 5664 88999999876 678777654
No 134
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=95.43 E-value=0.064 Score=48.59 Aligned_cols=100 Identities=24% Similarity=0.251 Sum_probs=71.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (381)
...+||+|.|||.+.. ++.|+++|+++ |.|.+|.+.+|..
T Consensus 39 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~~~---------------------------------- 78 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYN----QNKVYKYFKHC--GPIIHVDVADSLK---------------------------------- 78 (292)
T ss_dssp ---CEEEEEEECTTCC----HHHHHHHHGGG--SCEEEEEEEECTT----------------------------------
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEECCC----------------------------------
Confidence 5679999999999876 89999999987 5688887764210
Q ss_pred CCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEe
Q 016889 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVS 344 (381)
Q Consensus 267 ~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~ 344 (381)
...|.|||+|.+..+|..|.+ +.... -..+.+.
T Consensus 79 --------------------------------------------~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 79 --------------------------------------------KNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp --------------------------------------------SSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred --------------------------------------------CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 124799999999999999996 32221 1234466
Q ss_pred eCCCCCCeeeCCCCCChhhHHHHHHHHH
Q 016889 345 DAPESRELIWNNLNIKFFQRQIRHFFCF 372 (381)
Q Consensus 345 ~AP~P~DIiW~NL~~~~~~r~~R~~~~~ 372 (381)
.++ +.-|.=.||.....+.-++.++..
T Consensus 114 ~~~-~~~l~v~nlp~~~t~~~l~~~f~~ 140 (292)
T 2ghp_A 114 HLT-ECTLWMTNFPPSYTQRNIRDLLQD 140 (292)
T ss_dssp ECC-SCEEEEECCCTTCCHHHHHHHHHH
T ss_pred ECC-CCEEEEECCCCCCCHHHHHHHHHH
Confidence 664 567888899887777777766543
No 135
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=95.38 E-value=0.056 Score=45.60 Aligned_cols=38 Identities=11% Similarity=0.215 Sum_probs=31.2
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. ++.|+++|+.+ |.|.++.+.+|
T Consensus 102 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 139 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTE----EHHLRDYFEQY--GKIEVIEIMTD 139 (196)
T ss_dssp -CCSEEEEECCTTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCcceEEEeCCCCCCC----HHHHHHHHhcC--CCeEEEEEeec
Confidence 4568999999999875 89999999876 67888887753
No 136
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=95.37 E-value=0.0048 Score=51.49 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=28.3
Q ss_pred ccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016889 310 EKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (381)
Q Consensus 310 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 347 (381)
..+.|.|||+|.+..+|..|.+.+..... ..+.|..|.
T Consensus 133 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 133 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp SSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred CCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 35678999999999999999998765432 234566663
No 137
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=95.20 E-value=0.19 Score=41.59 Aligned_cols=35 Identities=26% Similarity=0.180 Sum_probs=27.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCC----CCeEEeeCC
Q 016889 313 LGAALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAP 347 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~~~~~----~~~~v~~AP 347 (381)
.+.|||+|.+..+|..|.+.+..... ..+.|+.|-
T Consensus 84 rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 84 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 46899999999999999998776543 346677764
No 138
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=95.15 E-value=0.12 Score=46.24 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=31.1
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...+|.|.|||.... ++.|+++|+.+ |.|.+|.+.+|
T Consensus 95 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 131 (261)
T 3sde_A 95 HGAALTVKNLSPVVS----NELLEQAFSQF--GPVEKAVVVVD 131 (261)
T ss_dssp CSSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEEE
T ss_pred cCCcccccCCCCCCC----HHHHHHHHHhc--CCeEEEEeeeC
Confidence 467999999999875 89999999877 57888888764
No 139
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=95.08 E-value=0.097 Score=44.14 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=31.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 112 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~v~~~~~~~~ 149 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLN----DDQVKELLTSF--GPLKAFNLVKD 149 (198)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHHHTB--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHc--CCccEEEEeec
Confidence 4569999999999875 89999999987 56888877653
No 140
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=95.03 E-value=0.079 Score=47.77 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=61.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNNKEANKIYEELEGYKKKLARAEAVYAESKSAGKPEG 266 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~~~l~~l~~~r~~~~~~LE~~~~~~~~~k~~~~~~~ 266 (381)
...++|.|.|||.++.+ ++.|+++|+.+ |.|.++.+.+|.
T Consensus 182 ~~~~~l~v~nlp~~~~~---~~~l~~~f~~~--G~i~~v~i~~~~----------------------------------- 221 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFND---VDALCRALSAV--HSPTFCQLACGQ----------------------------------- 221 (284)
T ss_dssp TSCSEEEEECCCTTCCC---HHHHHHHTCSS--SCCSEEEEEECS-----------------------------------
T ss_pred CCccEEEEecCCcccCC---HHHHHHHhhCC--CCeEEEEEEECC-----------------------------------
Confidence 45689999999999756 89999999876 568888776421
Q ss_pred CCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHhhhccCcceEEEEeCCHHHHHHHHHHhhcCCCC--CeEEe
Q 016889 267 TRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKITLKEKQLGAALVFFTSRVAAASAAQSLHAQLVD--TWTVS 344 (381)
Q Consensus 267 ~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~~~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~--~~~v~ 344 (381)
..++.|.|||+|.+..+|..|.+.+....-. .+.|.
T Consensus 222 ------------------------------------------~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 222 ------------------------------------------DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp ------------------------------------------SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ------------------------------------------CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 0124689999999999999999987654332 35577
Q ss_pred eCCCCC
Q 016889 345 DAPESR 350 (381)
Q Consensus 345 ~AP~P~ 350 (381)
.|....
T Consensus 260 ~a~~~~ 265 (284)
T 3smz_A 260 FCAPGP 265 (284)
T ss_dssp ECCSSS
T ss_pred EecCCC
Confidence 775433
No 141
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=95.01 E-value=0.1 Score=45.09 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=30.4
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...+|.|.|||.++. ++.|+++|+++ |.|.++.+.+
T Consensus 102 ~~~~l~v~nl~~~~t----~~~l~~~F~~~--G~i~~~~i~~ 137 (213)
T 4f02_A 102 GVGNIFIKNLDKSID----NKALYDTFSAF--GNILSCKVVC 137 (213)
T ss_dssp CTTEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEEE
T ss_pred ccccceECCcccccH----HHHHHHHHhhc--CCeEEEEeec
Confidence 357899999999876 89999999987 6788888775
No 142
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=94.84 E-value=0.064 Score=43.92 Aligned_cols=36 Identities=8% Similarity=0.198 Sum_probs=28.8
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...+|.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 86 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~ 121 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVR----PKEFEEFFSQW--GTIIDAQLML 121 (167)
T ss_dssp HCEEEEEEEECTTCC----HHHHHHHHHTT--SCCSEEECCC
T ss_pred CCCeEEECCCCCCCC----HHHHHHHHHhC--ccEEEEEEEE
Confidence 357999999999876 88999999977 5677766553
No 143
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.78 E-value=0.022 Score=44.84 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=22.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhh
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~ 217 (381)
...++|+|.|||.+.+ ++.|+++|+.+
T Consensus 23 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~ 49 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAE----NKHVIDFFKKL 49 (124)
T ss_dssp CCCCEEEEECCCTTCC----HHHHHHHSCSS
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc
Confidence 3468999999999876 88999999765
No 144
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=94.75 E-value=0.15 Score=45.15 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=30.4
Q ss_pred CCcceEEEecCCCCCCC-----CChHHHHHHHHHhhCCCceeEEEEe
Q 016889 187 PQQFAVLVRDLPDLPKG-----QSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~-----~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
...+||.|.|||.++.+ ...++.|+++|+++ |.|.+|.++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~ 176 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYV 176 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEE
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEE
Confidence 46799999999987630 01289999999987 678887765
No 145
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=94.70 E-value=0.31 Score=43.67 Aligned_cols=36 Identities=14% Similarity=0.330 Sum_probs=26.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHH----HHHHhhCCCceeEEEEe
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVD----SYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~----~~f~~~~p~~V~~v~i~ 228 (381)
...++|+|.|||.+.+ ++.|+ ++|+++ |.|.+|.+.
T Consensus 7 ~~~~~l~V~nlp~~~~----~~~l~~~L~~~F~~~--G~i~~v~~~ 46 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIK----KDELKKSLYAIFSQF--GQILDILVS 46 (282)
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHHHhcc--CCeEEEEEc
Confidence 4579999999999886 66655 677655 566665543
No 146
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=94.63 E-value=0.055 Score=39.30 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=33.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 9 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 46 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTS----KKDLKDYFTKF--GEVVDCTIKMD 46 (87)
T ss_dssp SCTTEEEEECCCTTCC----HHHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEeec
Confidence 5679999999999885 89999999877 67999998875
No 147
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=94.44 E-value=0.019 Score=46.31 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=26.8
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDA 346 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 346 (381)
+..|.|||+|.+..+|..|.+.+..... ..+.|..|
T Consensus 90 ~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 90 RMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred CcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4578999999999999999997765432 23456555
No 148
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=94.43 E-value=0.063 Score=39.09 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=32.0
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
..+||.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 5 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 41 (89)
T 3ucg_A 5 DARSIYVGNVDYGAT----AEELEAHFHGC--GSVNRVTILCD 41 (89)
T ss_dssp HHTEEEEESCCTTCC----HHHHHHHHGGG--CCEEEEEEEES
T ss_pred cCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEec
Confidence 468999999999875 89999999987 67999988875
No 149
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.38 E-value=0.093 Score=39.17 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=35.0
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
....++|.|.|||.+.+ ++.|+++|+++.||.|.++.+.++
T Consensus 12 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~g~g~v~~~~~~~g 52 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTS----EEMIEKEFNNIKPGAVERVKKIRD 52 (99)
T ss_dssp SSCCCEEEEESCCTTCC----HHHHHHHHHTTSTTCEEEEEECSS
T ss_pred cCCcCEEEEeCCCCCCC----HHHHHHHHHhcCCcceEEEEEeCC
Confidence 35679999999999875 899999999998888998887654
No 150
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.36 E-value=0.075 Score=40.61 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=33.7
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
.+...+|.|.|||.+.+ +++|+++|+++ |.|.+|.+.+|
T Consensus 13 ~~~~~~LfV~nLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 51 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 51 (105)
T ss_dssp CCCCCEEEECSCCTTSC----HHHHHHHHHHH--CCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEcC
Confidence 36689999999999875 89999999988 67999998864
No 151
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=94.34 E-value=0.56 Score=38.27 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=37.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeC------CCCCCeeeCCCCCChhhHHHHHHHH
Q 016889 313 LGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDA------PESRELIWNNLNIKFFQRQIRHFFC 371 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A------P~P~DIiW~NL~~~~~~r~~R~~~~ 371 (381)
.|.|||+|.+..+|..|. .+.... ...+.+..+ +.+.-|.=.||.....+.-++.++.
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 116 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLT 116 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHH
Confidence 589999999999999998 333221 112334333 2235677788887776766666554
No 152
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=94.21 E-value=0.17 Score=38.45 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=37.1
Q ss_pred HHHHHHhHHHHHHH-HHhhh-----------ccCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016889 291 EKIKEIIPKLEAEQ-KITLK-----------EKQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (381)
Q Consensus 291 ~~l~~l~~~i~~~~-~~~~~-----------~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 347 (381)
+..+.+.+++.++- ++.+. .++.|.|||+|.++.+|..|.+.+....- ....+..+|
T Consensus 34 ~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 34 EHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 33445556666655 54421 23579999999999999999988765432 223456665
No 153
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.10 E-value=0.093 Score=38.57 Aligned_cols=39 Identities=8% Similarity=0.144 Sum_probs=33.3
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
....++|.|.|||.+.+ ++.|+++|+++ |.|.++.+.++
T Consensus 7 ~~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~v~~v~~~~~ 45 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCT----NQELRAKFEEY--GPVIECDIVKD 45 (92)
T ss_dssp CCSSEEEEEESCCSSCC----HHHHHHHHHTT--SCCCEEEECSS
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEECC
Confidence 35679999999999875 89999999987 56889888766
No 154
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=94.08 E-value=0.26 Score=41.55 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=28.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCC-ceeEEEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMV 227 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~-~V~~v~i 227 (381)
+..++|.|.|||.+.. ++.|+++|+++ | .|.++.+
T Consensus 118 ~~~~~l~v~nl~~~~~----~~~l~~~f~~~--G~~v~~v~i 153 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKF 153 (198)
T ss_dssp CCCCEEEECCCCTTCC----HHHHHHHHHHT--TSCCCEEEE
T ss_pred CCccEEEEeCCCCCCC----HHHHHHHHHHc--CCCceEEEE
Confidence 4579999999999875 89999999887 5 6666654
No 155
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=94.07 E-value=0.052 Score=39.95 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=31.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
++.+||.|.|||.+.+ ++.|+++|+++ |.|.+|.+.+|
T Consensus 9 ~~~~~l~V~~Lp~~~t----e~~L~~~F~~~--G~i~~v~i~~~ 46 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMT----AEELQQFFCQY--GEVVDVFIPKP 46 (89)
T ss_dssp --CCEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEECCSS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEeeC
Confidence 6789999999999886 89999999987 67999988763
No 156
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=94.03 E-value=0.19 Score=43.23 Aligned_cols=36 Identities=8% Similarity=-0.074 Sum_probs=27.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCce--eEEEEe
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTF--YRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V--~~v~i~ 228 (381)
+..++|.|.|||.+.. ++.|+++|+++ |.| .++.+.
T Consensus 121 ~p~~~l~v~NLp~~~t----~~~L~~~F~~~--G~v~~~~v~~~ 158 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVT----EENFFEICDEL--GVKRPTSVKVF 158 (205)
T ss_dssp CCCSEEEEEEECTTCC----HHHHHHHHHHH--TCCCCSEEEEC
T ss_pred CCcceEEEeCCCCCCC----HHHHHHHHHhc--CCcceEEEEEE
Confidence 4568999999999875 89999999987 444 555443
No 157
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.00 E-value=0.12 Score=37.22 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=32.3
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
....++|.|.|||.+.+ ++.|+++|+++ |.|.++.+.+
T Consensus 9 ~~~~~~l~V~~l~~~~t----~~~l~~~f~~~--G~i~~~~~~~ 46 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTIT----ETDLRNHFYQF--GEIRTITVVQ 46 (85)
T ss_dssp CSSCCCEEEECCTTTSC----HHHHHHHHHTT--SCEEEEEEEG
T ss_pred CCCccEEEEcCCCCCCC----HHHHHHHHHhC--CCEeEEEEEC
Confidence 35679999999999875 89999999987 5699988875
No 158
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=93.99 E-value=0.36 Score=42.01 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=29.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCC-ceeEEEEe
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~-~V~~v~i~ 228 (381)
+..++|.|.|||.+.. ++.|+++|+++ | .|.++.+.
T Consensus 149 ~~~~~l~V~nlp~~~t----~~~l~~~f~~~--G~~i~~v~i~ 185 (229)
T 2adc_A 149 PPSATLHLSNIPPSVS----EEDLKVLFSSN--GGVVKGFKFF 185 (229)
T ss_dssp CSCSEEEEECCCTTCC----HHHHHHHHHTT--SCCEEEEEEC
T ss_pred CCCCEEEEeCCCccCC----HHHHHHHHHHc--CCCeeEEEEE
Confidence 4579999999999875 89999999987 5 67766554
No 159
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=93.79 E-value=0.34 Score=38.42 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=27.3
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCC----CCeEEeeCCCC
Q 016889 315 AALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAPES 349 (381)
Q Consensus 315 ~aFVtF~s~~~A~~a~q~~~~~~~----~~~~v~~AP~P 349 (381)
.|||+|.+..+|..|.+.+....- ..++++.|-.+
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 599999999999999998876543 34667777543
No 160
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=93.71 E-value=0.1 Score=39.13 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=32.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 7 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMD----ETEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEECCCTTCC----HHHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCeEEEEEEEC
Confidence 5679999999999875 89999999987 67999988864
No 161
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.63 E-value=0.13 Score=39.09 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=32.2
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
.+..++|+|.|||.+.+ ++.|+++|+++ |.|.+|.+.+
T Consensus 12 ~~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~V~~v~i~~ 49 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVV----EADLVEALEKF--GTICYVMMMP 49 (104)
T ss_dssp CCCCSEEEEESCCSSCC----HHHHHHHHTTT--SCEEEEEEET
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEEEEEEEC
Confidence 35679999999999875 89999999987 6799988764
No 162
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.49 E-value=0.27 Score=37.60 Aligned_cols=65 Identities=18% Similarity=0.073 Sum_probs=42.9
Q ss_pred HHHHHhHHHHHHHHHhh--------hccCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCCCCCCeeeCC
Q 016889 292 KIKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAPESRELIWNN 356 (381)
Q Consensus 292 ~l~~l~~~i~~~~~~~~--------~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~N 356 (381)
.++++++++.++=++.+ ...+.|.|||+|.+..+|..|.+.+.... -....+..|.+..|..+..
T Consensus 35 ~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 35 VLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp HHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred HHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 34555556655544432 12367999999999999999998776542 2345678887666665544
No 163
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.45 E-value=0.09 Score=39.70 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=33.0
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+|
T Consensus 14 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~ 51 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTT----QETLRSYFSQY--GEVVDCVIMKD 51 (105)
T ss_dssp SSSSEECCBSCCTTCC----HHHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeC
Confidence 5679999999999875 89999999987 67999988874
No 164
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.38 E-value=0.06 Score=39.27 Aligned_cols=38 Identities=8% Similarity=0.148 Sum_probs=31.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+++ ++.|+++|+++ |.|.++.+.+|
T Consensus 3 ~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 40 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMT----EDELREFFSQY--GDVMDVFIPKP 40 (88)
T ss_dssp SCCCEEEEESCCSSSC----HHHHHHHSTTT--SCCCEEECCSS
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHc--CCeeEEEEecC
Confidence 3579999999999876 89999999887 56888888754
No 165
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.30 E-value=0.11 Score=40.73 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=33.1
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
.+..++|.|.|||.+.+ ++.|+++|+.+ |.|.+|.+.+|
T Consensus 28 ~~ps~~LfVgNLp~~vt----e~dL~~lF~~f--G~V~~v~i~~~ 66 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVT----EGEVISLGLPF--GKVTNLLMLKG 66 (119)
T ss_dssp SSCCSEEEEESCCTTCC----HHHHHHHHTTT--SCCCEEEEEGG
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEeCC
Confidence 35679999999999875 89999999877 67999988764
No 166
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=93.18 E-value=0.16 Score=38.39 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=32.0
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEe
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
.+.+++|.|.|||.+.. ++.|++.|+++ |.|.+|.+.
T Consensus 18 ~~ps~~l~V~NLp~~~t----e~~L~~lF~~f--G~V~~v~i~ 54 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVV----EADLVEALQEF--GPISYVVVM 54 (100)
T ss_dssp CCCCSEEEEESCCTTCC----HHHHHHHHGGG--SCEEEEEEE
T ss_pred CCCCcEEEEeCCCCCCC----HHHHHHHHhcc--CCEEEEEEE
Confidence 46689999999999875 89999999987 679998876
No 167
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=93.13 E-value=0.51 Score=42.50 Aligned_cols=35 Identities=6% Similarity=0.186 Sum_probs=28.6
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCC-ceeEEEEe
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPD-TFYRSMVV 228 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~-~V~~v~i~ 228 (381)
..++|.|.|||.+.. ++.|.++|+.+ | .|.++.+.
T Consensus 116 ~~~~l~v~nlp~~~t----~~~l~~~f~~~--G~~i~~v~i~ 151 (292)
T 2ghp_A 116 TECTLWMTNFPPSYT----QRNIRDLLQDI--NVVALSIRLP 151 (292)
T ss_dssp CSCEEEEECCCTTCC----HHHHHHHHHHT--TCCCCEEECC
T ss_pred CCCEEEEECCCCCCC----HHHHHHHHHHh--CCCeEEEEEE
Confidence 578999999999875 89999999987 4 67666554
No 168
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.01 E-value=0.073 Score=37.51 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=29.0
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 190 ~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
.||.|.|||.+.. ++.|+++|++. |.|.++.+.+|
T Consensus 1 ~~l~v~nlp~~~t----~~~l~~~F~~~--G~v~~v~i~~~ 35 (77)
T 1uaw_A 1 CKMFIGGLSWQTT----QEGLREYFGQF--GEVKECLVMRD 35 (77)
T ss_dssp CCEEEESCCSSCC----SHHHHHHHTTT--SCCCCEEEECC
T ss_pred CEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEecC
Confidence 4799999999886 68899999987 56888887764
No 169
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=93.01 E-value=0.095 Score=40.49 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=31.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
+..++|+|.|||.+.. ++.|+++|+++ |.|.++.+.+|
T Consensus 38 ~~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~~~i~~~ 75 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFT----DTDLASTFLPF--GNVISAKVFID 75 (118)
T ss_dssp CCSEEEEEECSCTTCC----HHHHHHHTTTS--CEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEeC
Confidence 5579999999999875 89999999876 67888887653
No 170
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.93 E-value=0.17 Score=38.38 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=33.1
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
+..++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.++
T Consensus 23 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 60 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLT----DQLMRQTFSPF--GQIMEIRVFPE 60 (109)
T ss_dssp SSCCEEEEECCSSCCC----HHHHHHHHHHH--SCEEEEEEETT
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeCC
Confidence 5679999999999875 89999999988 57999998875
No 171
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.81 E-value=0.13 Score=39.33 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=32.7
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
....++|.|.|||.+.+ ++.|+++|+++ |.|.++.+.+|
T Consensus 26 ~~~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 64 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFR----DPDLRQMFGQF--GKILDVEIIFN 64 (109)
T ss_dssp TTCCCEEEEESCCTTCC----HHHHHHHGGGT--CCCSCEEECCB
T ss_pred CCCCCEEEEECCCCcCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 35679999999999876 89999999987 67888887754
No 172
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=92.76 E-value=0.074 Score=37.31 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=27.4
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 191 TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
||.|.|||.+.. ++.|+++|+++ |.|.++.+.+
T Consensus 1 ~l~v~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 33 (75)
T 1iqt_A 1 KIFVGGLSPDTP----EEKIREYFGGF--GEVESIELPM 33 (75)
T ss_dssp CEEESCCCSSCC----HHHHHHHHHHH--SCCSEECCCC
T ss_pred CEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEEe
Confidence 689999999876 89999999998 5577776654
No 173
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.60 E-value=0.12 Score=39.01 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=32.4
Q ss_pred CCCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 186 RPQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
.+..++|.|.|||.+.+ ++.|+++|+++ |.|.+|.+.++
T Consensus 12 ~~p~~~l~V~nLp~~~t----e~~L~~~F~~f--G~v~~v~i~~~ 50 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVT----ETEVIALGLPF--GKVTNILMLKG 50 (101)
T ss_dssp SSCCSEEEEESCCTTCC----HHHHHHTTTTT--SCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEECC
Confidence 35678999999999875 89999999877 67999887753
No 174
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.55 E-value=0.27 Score=36.34 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=31.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHH----HHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVD----SYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~----~~f~~~~p~~V~~v~i~~d 230 (381)
....+|.|.|||.+.. ++.|+ ++|+++ |.|.+|.+.+|
T Consensus 7 ~~~~~l~V~nL~~~~~----~~~l~~~l~~~F~~~--G~v~~v~i~~~ 48 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLS----RKELQQLLQEAFARH--GKVKSVELSPH 48 (96)
T ss_dssp SSCEEEEEESCCTTSC----HHHHHHHHHHHHHHH--SCEEEEEECSC
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHHhcccc--CcEEEEEEEeC
Confidence 5578999999999876 78888 999888 67989888753
No 175
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.51 E-value=0.15 Score=39.17 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=31.2
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
..++|+|.|||.+.. ++.|+++|+++ |.|.+|.+.+|
T Consensus 24 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 60 (114)
T 2cq4_A 24 DARTVFCMQLAARIR----PRDLEDFFSAV--GKVRDVRIISD 60 (114)
T ss_dssp HHTEEEEESCCTTCC----HHHHHHHHTTT--SCEEEEEECCS
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhC--CCEeEEEEEec
Confidence 358999999999876 89999999887 67999888754
No 176
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=91.94 E-value=0.18 Score=39.30 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=31.9
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
..++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.+|
T Consensus 35 ~~~~l~V~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 71 (124)
T 2jwn_A 35 DKRSVYVGNVDYGST----AQDLEAHFSSC--GSINRITILCD 71 (124)
T ss_dssp HHTEEEEEEECTTCC----HHHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEec
Confidence 358999999999875 89999999987 67999988874
No 177
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=91.69 E-value=0.24 Score=36.91 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=30.6
Q ss_pred ceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 190 FAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 190 ~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
.||.|.|||.+.+ ++.|+++|+++ |.|.++.+.+|
T Consensus 1 ~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~v~i~~~ 35 (101)
T 2hvz_A 1 MKVYVGNLGTGAG----KGELERAFSYY--GPLRTVWIARN 35 (101)
T ss_dssp CEEEEECCCSSCS----HHHHHHHHHHH--CCCSEEEEESS
T ss_pred CEEEEeCCCCCCC----HHHHHHHHHhc--CCeEEEEEeeC
Confidence 3799999999875 89999999988 57999999877
No 178
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=91.65 E-value=0.13 Score=36.04 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=27.1
Q ss_pred eEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 191 AVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 191 TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
+|.|.|||.+.. ++.|+++|++. |.|.++.+.+
T Consensus 1 ~l~v~nlp~~~t----~~~l~~~F~~~--G~i~~v~i~~ 33 (75)
T 2mss_A 1 KIFVGGLSVNTT----VEDVKHYFEQF--GKVDDAMLMF 33 (75)
T ss_dssp CEEEECCCSSCC----HHHHHHHHHTT--SCCSEECCCB
T ss_pred CEEEecCCCCCC----HHHHHHHHHhc--CCEEEEEEEe
Confidence 478999999876 89999999987 5687876654
No 179
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.65 E-value=0.12 Score=39.20 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=31.8
Q ss_pred CCcceEEEecCCC-CCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...++|.|.|||. +.+ +++|+++|+++ |.|.+|.+.+
T Consensus 13 ~p~~~l~V~nLp~~~~t----e~dL~~lF~~f--G~V~~v~i~~ 50 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNL----RYQLLQLVEPF--GVISNHLILN 50 (102)
T ss_dssp CCCCEEEEESCCCSSSH----HHHHHTTTGGG--SCEEEEEECS
T ss_pred CCCCEEEEeCCCCCcCC----HHHHHHHHHhc--CCEEEEEEEc
Confidence 4578999999999 765 89999999987 6799998875
No 180
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.59 E-value=0.19 Score=38.61 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=31.2
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
..++|+|.|||.+.. ++.|+++|+++ |.|.+|.+.+|
T Consensus 26 ~~~~l~V~nLp~~~t----e~~l~~~F~~~--G~i~~v~i~~~ 62 (116)
T 1x4b_A 26 QFRKLFIGGLSFETT----EESLRNYYEQW--GKLTDCVVMRD 62 (116)
T ss_dssp HHTEEEEECCTTCCC----HHHHHHHHTSS--CCCSEEEEECC
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHHhc--CCEEEEEEEEC
Confidence 348999999999875 89999999876 67889888765
No 181
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=90.70 E-value=0.37 Score=35.83 Aligned_cols=36 Identities=8% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEe
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
+..++|.|.|||.+.+ ++.|+++|+++ |.|.++.+.
T Consensus 25 ~~~~~l~V~nlp~~~~----~~~l~~~f~~~--G~i~~~~~~ 60 (101)
T 2la4_A 25 PRVTTAYIGNIPHFAT----EADLIPLFQNF--GFILDFKHY 60 (101)
T ss_dssp SSCCEEEEESCCTTCC----HHHHHHHHHTT--SCCSEEEEE
T ss_pred CCCCEEEEcCCCcccC----HHHHHHHHHhC--CCEEEEEEe
Confidence 5578999999999875 89999999987 668888775
No 182
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=89.96 E-value=0.52 Score=34.93 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=30.5
Q ss_pred CCCcceEEEecCCC-CCCCCChHHHHHHHHHhhCCCceeEEEE
Q 016889 186 RPQQFAVLVRDLPD-LPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (381)
Q Consensus 186 ~~~~~TvlV~~IP~-~~~~~~~~~~L~~~f~~~~p~~V~~v~i 227 (381)
.+..++|.|.|||. +.. ++.|+++|+++ |.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t----~~~L~~~F~~~--G~v~~v~i 55 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVS----KEDLFRIFSPY--GHIMQINI 55 (97)
T ss_dssp CCTTCEEEEESCCSSCCC----HHHHHHHHGGG--SCEEEEEE
T ss_pred CCCCCEEEEeCCCcccCC----HHHHHHHHHhc--CCEEEEEE
Confidence 36689999999997 775 89999999987 67888877
No 183
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=89.84 E-value=0.49 Score=36.56 Aligned_cols=45 Identities=27% Similarity=0.164 Sum_probs=32.2
Q ss_pred HHHHHhHHHHHHHHHhh--------hccCcceEEEEeCCHHHHHHHHHHhhcC
Q 016889 292 KIKEIIPKLEAEQKITL--------KEKQLGAALVFFTSRVAAASAAQSLHAQ 336 (381)
Q Consensus 292 ~l~~l~~~i~~~~~~~~--------~~~~~~~aFVtF~s~~~A~~a~q~~~~~ 336 (381)
..+++++++.++-++.+ ...+.|.|||+|.+..+|..|.+.+...
T Consensus 26 ~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 26 WDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp HHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34566666666555442 1234799999999999999999987654
No 184
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.81 E-value=0.44 Score=35.87 Aligned_cols=36 Identities=28% Similarity=0.197 Sum_probs=26.2
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCCCCeEEeeC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDA 346 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~A 346 (381)
++.|.|||+|.+..+|..|.+......-..+.|..|
T Consensus 52 ~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a 87 (100)
T 2d9o_A 52 KKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWL 87 (100)
T ss_dssp SSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECS
T ss_pred CCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEc
Confidence 457899999999999999998743322334556655
No 185
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=89.69 E-value=0.23 Score=36.03 Aligned_cols=39 Identities=21% Similarity=0.159 Sum_probs=29.5
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCCCC
Q 016889 312 QLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPESR 350 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P~ 350 (381)
..|.|||+|.+..+|..|.+.+....- ....|+.||...
T Consensus 39 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 39 NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 457999999999999999997765432 345678887643
No 186
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=89.61 E-value=0.74 Score=32.91 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=31.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhh----C----C-CceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI----Y----P-DTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~----~----p-~~V~~v~i~~d 230 (381)
...++|.|.|||.+.. ++.|+++|++. . | +.|.++.+.++
T Consensus 4 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 4 GSARRLYVGNIPFGIT----EEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGGEEEEESCCTTCC----HHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 4579999999999875 89999999987 3 1 16888887644
No 187
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=89.57 E-value=0.81 Score=34.61 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=26.4
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCC--CeEEeeCC
Q 016889 312 QLGAALVFFTSRVAAASAAQSLHAQLVD--TWTVSDAP 347 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~~~~~~--~~~v~~AP 347 (381)
+.|.|||+|.++.+|..|.+.+....-. ...+..+|
T Consensus 58 ~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 58 GCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 4689999999999999999987654322 23455444
No 188
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=89.46 E-value=0.3 Score=38.52 Aligned_cols=38 Identities=8% Similarity=0.151 Sum_probs=30.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeE--EEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR--SMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~--v~i~~d 230 (381)
...++|+|.|||.+.+ ++.|+++|+++ |.|.. |.+++|
T Consensus 21 ~~~~~lfV~nL~~~~t----e~~L~~~F~~~--G~v~~~~v~i~~d 60 (131)
T 2m2b_A 21 NANDTIILRNLNPHST----MDSILGALAPY--AVLSSSNVRVIKD 60 (131)
T ss_dssp CCCCEEEECSCCTTCC----SHHHHHHHGGG--CCCCTTTEECCBC
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHHh--CCcceeeEEEEEc
Confidence 4568999999999886 78999999988 55644 776654
No 189
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.00 E-value=0.77 Score=33.59 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=27.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v 225 (381)
...++|.|.|||.+.+ ++.|+++|+++ |.|.+|
T Consensus 6 ~~~~~l~V~nl~~~~t----~~~l~~~F~~~--G~v~~v 38 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVD----SAQLSEYFLAF--GPVASV 38 (94)
T ss_dssp TTCCEEEEECCCTTCC----HHHHHHHGGGT--SCEEEE
T ss_pred CCCCEEEEECCCCCCC----HHHHHHHHHhc--CCeEEE
Confidence 4568999999999876 89999999987 567776
No 190
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=87.86 E-value=0.27 Score=39.50 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=29.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...++|.|.|||.+.+ +++|+++|+++. +.+|.+++|
T Consensus 44 ~~~~~lfV~nLp~~~t----e~dL~~~F~~~G---i~~v~i~~d 80 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKAT----ENDIYNFFSPLN---PVRVHIEIG 80 (139)
T ss_dssp -CCCCEECCSCCTTCC----HHHHHHHHCSCC---CSEEECCCS
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHHhcC---CeEEEEEEC
Confidence 4568999999999886 899999999873 557777654
No 191
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=87.48 E-value=0.58 Score=35.20 Aligned_cols=39 Identities=10% Similarity=0.221 Sum_probs=30.2
Q ss_pred CcceEEEecCCCCCCCCC--hHHHHHHHHHhhCCCceeEEEEe
Q 016889 188 QQFAVLVRDLPDLPKGQS--RKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~--~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
..++|.|.|||....++. .++.|+++|+++ |.|.+|.+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~ 54 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP 54 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEee
Confidence 468999999998774211 378999999987 568888765
No 192
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=85.57 E-value=1.4 Score=32.48 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=26.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeC
Q 016889 312 QLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDA 346 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 346 (381)
+.+.|||+|.+..+|..|.+.+....- ..+.|+.|
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 578999999999999999987654322 23556555
No 193
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.38 E-value=1.3 Score=33.41 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=29.9
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHh---hCCCceeEEEEe
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKA---IYPDTFYRSMVV 228 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~---~~p~~V~~v~i~ 228 (381)
...+|.|+|+|++.. ++.|+-||++ -..|.|.++...
T Consensus 7 ~~~~I~V~~lPp~~~----~e~L~LYFEn~rrsGGG~V~~v~~~ 46 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVP----DELLTLYFENRRRSGGGPVLSWQRL 46 (104)
T ss_dssp CCCEEEEESCCTTSC----HHHHHHHHHCTTTTCCCCEEEEEEE
T ss_pred CccEEEEECCCCCCC----hhHheEEEeCCCcCCCceeeEEEEc
Confidence 458999999999874 7899999998 466788877644
No 194
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=85.36 E-value=0.84 Score=33.41 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=27.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 347 (381)
+..|.|||+|.+..+|..|.+.+....- ..+.|..|.
T Consensus 51 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 51 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 5678999999999999999997664322 235577763
No 195
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.88 E-value=1 Score=33.05 Aligned_cols=34 Identities=29% Similarity=0.145 Sum_probs=25.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeC
Q 016889 313 LGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDA 346 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 346 (381)
.+.|||+|.+..+|..|.+.+....- ..+.|..|
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 67899999999999999987664422 23556666
No 196
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=84.77 E-value=0.59 Score=33.79 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=27.7
Q ss_pred CcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEE
Q 016889 188 QQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMV 227 (381)
Q Consensus 188 ~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i 227 (381)
..++|.|.|||.+.. ++.|+++|+++ .|.++.+
T Consensus 4 ~~~~l~V~nLp~~~t----~~~l~~~F~~~---~v~~~~i 36 (88)
T 1wg1_A 4 GSSGILVKNLPQDSN----CQEVHDLLKDY---DLKYCYV 36 (88)
T ss_dssp CCCCEEEESCCSSCC----HHHHHHHTCSS---CCCCEEE
T ss_pred CCCEEEEeCCCCCCC----HHHHHHHHhhC---CeEEEEE
Confidence 468999999999876 89999999877 4777766
No 197
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.54 E-value=0.97 Score=32.86 Aligned_cols=35 Identities=20% Similarity=0.089 Sum_probs=26.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhhc-CC--CCCeEEeeCC
Q 016889 313 LGAALVFFTSRVAAASAAQSLHA-QL--VDTWTVSDAP 347 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~~-~~--~~~~~v~~AP 347 (381)
.+.|||+|.+..+|..|.+.+.. .. -..+.|+.|-
T Consensus 44 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 57999999999999999987765 32 2335566664
No 198
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.52 E-value=1.2 Score=32.78 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=27.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPE 348 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~ 348 (381)
+..+.|||+|.+..+|..|.+.+..... ..+.|..|-.
T Consensus 47 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 47 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 3467999999999999999987654322 2355666643
No 199
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=84.48 E-value=1.1 Score=31.04 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.6
Q ss_pred cCcceEEEEeCCHHHHHHHHH
Q 016889 311 KQLGAALVFFTSRVAAASAAQ 331 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q 331 (381)
++.|.|||+|.+..+|..|.+
T Consensus 39 ~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 39 RHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp TSCBEEEEECSCHHHHHHHHS
T ss_pred CcCcEEEEEECCHHHHHHHHH
Confidence 457899999999999999876
No 200
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=84.26 E-value=1.4 Score=34.87 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=30.4
Q ss_pred ceEEEecC----CCCCCCCChHHHHHHHHHhhCCCceeEEEEeecC
Q 016889 190 FAVLVRDL----PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (381)
Q Consensus 190 ~TvlV~~I----P~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~ 231 (381)
..|+|.|+ |.... +..|++||+++ |+|.++.+..|-
T Consensus 3 ~kI~VgnL~~~~~~~tt----e~~Lk~~Fs~f--GeV~~~~li~Dp 42 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQ----DISIKNYFKKY--GEISHFEAFNDP 42 (136)
T ss_dssp CEEEEEESSSSCCCCCC----HHHHHHHHHTT--SCCSEEEEEECT
T ss_pred cEEEEeCCCCCCCCCCC----HHHHHHHHHhc--CCeEEEEEEecC
Confidence 46899999 88775 89999999987 678888888775
No 201
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.71 E-value=0.93 Score=32.97 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=24.6
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhC
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIY 218 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~ 218 (381)
...++|.|.|||.+.+ ++.|+++|+++.
T Consensus 6 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~G 33 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVT----ADDLRQLFGDRK 33 (93)
T ss_dssp CCCCCEEEECCCTTCC----HHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCC----HHHHHHHHHHcC
Confidence 5678999999999875 899999999884
No 202
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.88 E-value=1.5 Score=32.20 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=26.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016889 312 QLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 347 (381)
..+.|||+|.+..+|..|.+.+..... ..+.|..|-
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 467999999999999999997654432 235566653
No 203
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=82.55 E-value=1.8 Score=31.86 Aligned_cols=36 Identities=6% Similarity=0.087 Sum_probs=26.6
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016889 312 QLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 347 (381)
..|.|||+|.+..+|..|.+.+....- ..+.|+.|-
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 478999999999999999997655422 234566553
No 204
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.26 E-value=1.8 Score=32.48 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=26.6
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCC
Q 016889 313 LGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPE 348 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~ 348 (381)
.+.|||+|.+..+|..|.+.+..... ..+.|..|-.
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 68999999999999999987754422 2345666643
No 205
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=82.05 E-value=2.3 Score=32.88 Aligned_cols=38 Identities=21% Similarity=0.161 Sum_probs=27.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPE 348 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~ 348 (381)
+..|.|||+|.+..+|..|.+.+..... ..+.|..|-.
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 3568999999999999999987654432 3455666643
No 206
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.99 E-value=0.96 Score=31.42 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=21.0
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhh
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLH 334 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~ 334 (381)
++.|.|||+|.+..+|..|.+.+.
T Consensus 40 ~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 40 RSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp SCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CcCceEEEEEcCHHHHHHHHHhCC
Confidence 457899999999999999998665
No 207
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=81.82 E-value=0.32 Score=37.34 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=25.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYR 224 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~ 224 (381)
...++|.|.|||.+.. ++.|+++|+++ |.|.+
T Consensus 5 ~~~~~l~V~nLp~~~t----~~~l~~~F~~~--G~i~~ 36 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVT----IESVADYFKQI--GIIKT 36 (116)
Confidence 4578999999999876 78899999887 44544
No 208
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=80.44 E-value=2 Score=38.22 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=30.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEe
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
+..++|.|.|||.+.. ++.|+++|+++ |.|.+|.+.
T Consensus 205 ~~~~~l~v~nl~~~~~----~~~l~~~F~~~--G~i~~v~~~ 240 (282)
T 3pgw_A 205 PPNHILFLTNLPEETN----ELMLSMLFNQF--PGFKEVRLV 240 (282)
T ss_pred CCCCEEEEeCCCCcCC----HHHHHHHHHhc--CCeEEEEEe
Confidence 4578999999999875 89999999987 678888876
No 209
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=80.40 E-value=2.6 Score=31.61 Aligned_cols=36 Identities=14% Similarity=-0.102 Sum_probs=25.9
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCC----CCCeEEeeCC
Q 016889 312 QLGAALVFFTSRVAAASAAQSLHAQL----VDTWTVSDAP 347 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~~~~----~~~~~v~~AP 347 (381)
..|.|||+|.+..+|..|.+.+.... -..+.|..|-
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 35899999999999999998764321 2345566664
No 210
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=79.81 E-value=1.5 Score=32.78 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=28.6
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CC-CeEEeeCCC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VD-TWTVSDAPE 348 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~-~~~v~~AP~ 348 (381)
++.|.|||+|.+..+|..|.+.+.... -. .+.|..|-+
T Consensus 59 ~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 59 KTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp BSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 457899999999999999999765432 22 466777754
No 211
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=79.50 E-value=0.81 Score=31.68 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.6
Q ss_pred cCcceEEEEeCCHHHHHHHHHH
Q 016889 311 KQLGAALVFFTSRVAAASAAQS 332 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~ 332 (381)
++.|.|||+|.+..+|..|.+.
T Consensus 39 ~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 39 KRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp SSCCCEEEECSSSHHHHHHHTT
T ss_pred CcCCEEEEEECCHHHHHHHHHh
Confidence 4578999999999999999884
No 212
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.16 E-value=2.6 Score=30.37 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=25.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016889 313 LGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 347 (381)
.+.|||+|.+..+|..|.+.+..... ..+.|+.|-
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 55999999999999999987654422 335566663
No 213
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=78.79 E-value=1.6 Score=31.17 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=25.0
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAP 347 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 347 (381)
++.|.|||+|.+..+|..|. .+....- ....|..|-
T Consensus 46 ~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 46 HPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp SCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 45789999999999999998 4443322 234566653
No 214
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.64 E-value=1.6 Score=32.62 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=25.1
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC----CCCCeEEeeCC
Q 016889 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 347 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~~~----~~~~~~v~~AP 347 (381)
.|.|||+|.+..+|..|.+.+... .-..+.|..|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 689999999999999999865422 11234566664
No 215
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.23 E-value=1.6 Score=33.68 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=20.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcC
Q 016889 314 GAALVFFTSRVAAASAAQSLHAQ 336 (381)
Q Consensus 314 ~~aFVtF~s~~~A~~a~q~~~~~ 336 (381)
|.|||+|.+..+|..|.+.+...
T Consensus 64 gfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 64 PYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCEEEEESSHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 58999999999999999987654
No 216
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.87 E-value=2 Score=31.97 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=25.3
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEE
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRS 225 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v 225 (381)
|++.++.|.|||.+...+..+..|.+.|+++ .|+|.+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y-GG~Vl~V 44 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNC-GGKVLSI 44 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTT-TCCEEEC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHc-CCeeEEE
Confidence 4444488999999987422234477888876 3478776
No 217
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.70 E-value=0.67 Score=33.42 Aligned_cols=37 Identities=19% Similarity=-0.023 Sum_probs=22.7
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCCCeEEeeCCC
Q 016889 312 QLGAALVFFTSRVAAASAAQSLHAQLVDTWTVSDAPE 348 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~AP~ 348 (381)
+.|.|||+|.+..+|..+.+.....+.....+..|..
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 5789999999999997653321111223344555543
No 218
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=77.42 E-value=4.5 Score=31.50 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=28.3
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCC----CCeEEeeCCCCC
Q 016889 315 AALVFFTSRVAAASAAQSLHAQLV----DTWTVSDAPESR 350 (381)
Q Consensus 315 ~aFVtF~s~~~A~~a~q~~~~~~~----~~~~v~~AP~P~ 350 (381)
.|||+|.+..+|..|.+.+....- ..+.|..|-.++
T Consensus 64 ~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 64 QAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 599999999999999998876643 246788776444
No 219
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.38 E-value=2.2 Score=31.98 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=26.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCC----CCCeEEeeCCCC
Q 016889 313 LGAALVFFTSRVAAASAAQSLHAQL----VDTWTVSDAPES 349 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~~~~----~~~~~v~~AP~P 349 (381)
-+.|||+|.+..+|..|.+.+.... -..+.|..|-..
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 4789999999999999998765432 223556666543
No 220
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=77.37 E-value=2.5 Score=31.68 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.6
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcC
Q 016889 312 QLGAALVFFTSRVAAASAAQSLHAQ 336 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~~~ 336 (381)
..|.|||+|.+..+|..|.+.+...
T Consensus 56 ~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 56 KKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCC
Confidence 4689999999999999999877644
No 221
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=76.39 E-value=2.4 Score=31.19 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=21.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQ 336 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~ 336 (381)
+..|.|||+|.+..+|..|...+...
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANF 86 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 45789999999999999999876543
No 222
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=75.83 E-value=4.1 Score=33.03 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=39.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCC--------CCCeeeCCCCCChhhHHHHHHH
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPE--------SRELIWNNLNIKFFQRQIRHFF 370 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~--------P~DIiW~NL~~~~~~r~~R~~~ 370 (381)
+..|.|||+|.+..+|..|.+ +....- ..+.+..|.. ..-|.=.||.....+.-++.++
T Consensus 52 ~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F 120 (175)
T 1fje_B 52 TNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVF 120 (175)
T ss_dssp TTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHC
T ss_pred ccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHH
Confidence 467899999999999999996 433221 2344555542 2457778887766666665543
No 223
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.69 E-value=2.7 Score=32.31 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=30.3
Q ss_pred CCcceEEE--ecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLV--RDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV--~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...+++.| -|||.+.+ ++.|+++|+++ |.|.+|.+..
T Consensus 23 ~pt~~L~V~Ng~L~~~~t----e~~L~~~F~~f--G~v~~v~i~~ 61 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVS----RNQLLPVLEKC--GLVDALLMPP 61 (114)
T ss_dssp SCCSEEEEETCTGGGTCC----HHHHHHHHHHH--SCEEEEECCT
T ss_pred CCCCEEEEECCCCCCCCC----HHHHHHHHHhc--CCeEEEEEeC
Confidence 45688999 55999875 89999999998 5788888764
No 224
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=75.37 E-value=1.6 Score=31.86 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=23.7
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhh
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAI 217 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~ 217 (381)
...++|.|.|||.+.. ++.|+++|+++
T Consensus 14 ~~~~~l~V~nL~~~~t----~~~l~~~F~~~ 40 (96)
T 1fjc_A 14 RAARTLLAKNLSFNIT----EDELKEVFEDA 40 (96)
T ss_dssp TGGGEEEEESCCSSCC----HHHHHHHHCSE
T ss_pred CCCCEEEEeCCCCCCC----HHHHHHHHhhC
Confidence 5679999999999886 89999999876
No 225
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.34 E-value=2.3 Score=32.16 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=19.8
Q ss_pred cceEEEEeCCHHHHHHHHHHhh
Q 016889 313 LGAALVFFTSRVAAASAAQSLH 334 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~ 334 (381)
.|.|||+|.+..+|..|.+.+.
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCEEEEEECCHHHHHHHHHHhc
Confidence 5899999999999999998664
No 226
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=75.27 E-value=1.6 Score=31.08 Aligned_cols=22 Identities=9% Similarity=0.320 Sum_probs=19.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHH
Q 016889 311 KQLGAALVFFTSRVAAASAAQS 332 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~ 332 (381)
++.|.|||+|.+..+|..|.+.
T Consensus 51 ~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 51 RSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp CEEEEEEEEESSTHHHHHHHHS
T ss_pred ccccEEEEEECCHHHHHHHHHh
Confidence 4578999999999999999875
No 227
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=75.06 E-value=3.1 Score=32.09 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=32.7
Q ss_pred CCcceEEEecC--CCCCCCCChHHHHHHHHHhhCCCceeEEEEeecC
Q 016889 187 PQQFAVLVRDL--PDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (381)
Q Consensus 187 ~~~~TvlV~~I--P~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~ 231 (381)
+.+++|.+.|+ |.++.+ ..++.|++.|+++ |.|.+|.+++|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~d-dleedl~eef~k~--G~V~~v~I~~~~ 61 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDD-DLEGEVTEECGKF--GAVNRVIIYQEK 61 (118)
T ss_dssp HSCCEEEEESCSCGGGCCT-THHHHHHHHHTTT--SCEEEEEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHH-HHHHHHHHHHhcc--CCEeEEEEeecC
Confidence 35799999998 444443 4588999999877 689999999764
No 228
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.85 E-value=2.2 Score=30.15 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.8
Q ss_pred CcceEEEEeCCHHHHHHHHHHh
Q 016889 312 QLGAALVFFTSRVAAASAAQSL 333 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~ 333 (381)
..|.|||+|.+..+|..|.+.+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHh
Confidence 3689999999999999999866
No 229
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.78 E-value=2.1 Score=32.28 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=26.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeC
Q 016889 312 QLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDA 346 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 346 (381)
..|.|||+|.+..+|..|.+.+....- ..+.|+.|
T Consensus 68 ~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 68 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 578999999999999999987654432 23445555
No 230
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=74.22 E-value=1.4 Score=31.92 Aligned_cols=18 Identities=28% Similarity=0.157 Sum_probs=15.6
Q ss_pred CcceEEEEeCCHHHHHHH
Q 016889 312 QLGAALVFFTSRVAAASA 329 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a 329 (381)
+.|.|||+|.+..+|..+
T Consensus 47 srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp CCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHH
Confidence 578999999999999843
No 231
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.87 E-value=2.5 Score=32.74 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=25.3
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcC----CCCCeEEeeCC
Q 016889 313 LGAALVFFTSRVAAASAAQSLHAQ----LVDTWTVSDAP 347 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~~~----~~~~~~v~~AP 347 (381)
.|.|||+|.+..+|..|.+.+... .-..+.|..|-
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 589999999999999999866421 12245566663
No 232
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=73.86 E-value=2 Score=30.54 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=19.0
Q ss_pred CcceEEEEeCCHHHHHHHHHHhh
Q 016889 312 QLGAALVFFTSRVAAASAAQSLH 334 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~ 334 (381)
..|.|||+|.+..+|..|. .+.
T Consensus 52 ~kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 52 DKNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp SSSEEEEEESSHHHHHHHG-GGT
T ss_pred CCcEEEEEcCCHHHHHHHH-hcC
Confidence 4789999999999999998 543
No 233
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=73.40 E-value=2.9 Score=32.26 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=26.4
Q ss_pred cceEEEEeCCHHHHHHHHHHhhcCCCC--CeEEeeCCC
Q 016889 313 LGAALVFFTSRVAAASAAQSLHAQLVD--TWTVSDAPE 348 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~~~~~~--~~~v~~AP~ 348 (381)
.|.|||+|.+..+|..|.+.+....-. ...+..+|+
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 388999999999999999988655322 244555553
No 234
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=72.58 E-value=6 Score=32.68 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=26.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeC
Q 016889 312 QLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDA 346 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 346 (381)
+.|.|||+|.+..+|..|.+.+....- ..+.|..|
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 478999999999999999997665432 23456665
No 235
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=69.99 E-value=4.7 Score=30.85 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=24.9
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCC--CCCeEEeeCC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQL--VDTWTVSDAP 347 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 347 (381)
.+.|.|||+|.+..+|..|. .+.... -..+.|+.|-
T Consensus 76 ~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 76 HPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp SCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45789999999999999998 443322 1234566653
No 236
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.89 E-value=2.7 Score=31.81 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.5
Q ss_pred cCcceEEEEeCCHHHHHHHHHH
Q 016889 311 KQLGAALVFFTSRVAAASAAQS 332 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~ 332 (381)
+..|.|||+|.+..+|..|.+.
T Consensus 67 ~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 67 RSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp SCCSEEEEECSSHHHHHHHHTS
T ss_pred CcCceEEEEeCCHHHHHHHHHh
Confidence 4578999999999999999876
No 237
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.73 E-value=2.2 Score=31.73 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=19.0
Q ss_pred CcceEEEEeCCHHHHHHHHHH
Q 016889 312 QLGAALVFFTSRVAAASAAQS 332 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~ 332 (381)
..+.|||+|.+..+|..|.+.
T Consensus 57 ~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 57 SRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp EEEEEEEEESSTTHHHHHHHH
T ss_pred cceEEEEEECCHHHHHHHHHh
Confidence 468999999999999999887
No 238
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.03 E-value=3.9 Score=29.60 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=23.4
Q ss_pred eEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCCC
Q 016889 315 AALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPES 349 (381)
Q Consensus 315 ~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P 349 (381)
.|||+|.+..+|..|.+ +....- ..+.|..|.+.
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 99999999999999998 543321 22345555433
No 239
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=67.11 E-value=12 Score=29.70 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=42.0
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC--CCCCe-------------------EEeeCCCCCCeeeCCCCCChhhHHHHHH
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQ--LVDTW-------------------TVSDAPESRELIWNNLNIKFFQRQIRHF 369 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~--~~~~~-------------------~v~~AP~P~DIiW~NL~~~~~~r~~R~~ 369 (381)
+..|.|||+|.+..+|..|.+..... ....| .....+.+.-|+-.||.....+.-++.+
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 46799999999999999998765321 00111 1122344567888999888777777777
Q ss_pred HHH
Q 016889 370 FCF 372 (381)
Q Consensus 370 ~~~ 372 (381)
+.-
T Consensus 91 F~~ 93 (158)
T 2kn4_A 91 FEK 93 (158)
T ss_dssp HHH
T ss_pred HHh
Confidence 643
No 240
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=67.02 E-value=3 Score=31.69 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.5
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhc
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHA 335 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~ 335 (381)
+..|.|||+|.+..+|..|.+.+..
T Consensus 80 ~~~g~afV~f~~~~~A~~A~~~l~g 104 (118)
T 2khc_A 80 LSKCFGFVSFDNPDSAQVAIKAMNG 104 (118)
T ss_dssp CCCCEEEEEEESSHHHHHHHHHCCC
T ss_pred CcCcEEEEEECCHHHHHHHHHHcCC
Confidence 4578999999999999999987654
No 241
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=66.81 E-value=8 Score=30.06 Aligned_cols=37 Identities=3% Similarity=0.001 Sum_probs=29.0
Q ss_pred Ccce--EEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeec
Q 016889 188 QQFA--VLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTN 230 (381)
Q Consensus 188 ~~~T--vlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d 230 (381)
...+ |.|.|+|...+ ++.|.+.|+++ |.|.+|.+...
T Consensus 22 ps~vl~l~V~NL~~~vt----~~~L~~~Fs~y--G~V~~v~i~~~ 60 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPIT----VDVLYTVCNPV--GKVQRIVIFKR 60 (124)
T ss_dssp CCSEEEEEEESCCSCCC----HHHHHHHHTTT--SCEEEEEEEES
T ss_pred CCcEEEEEEcCcCCCCC----HHHHHHHHHhc--CCEEEEEEEeC
Confidence 3455 45899998875 88999999988 67999988653
No 242
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=66.31 E-value=5.5 Score=29.81 Aligned_cols=44 Identities=7% Similarity=-0.032 Sum_probs=32.4
Q ss_pred CCcceEEEecC--CCCCCCC----ChHHHHHHHHHhhCCCceeEEEEeecCc
Q 016889 187 PQQFAVLVRDL--PDLPKGQ----SRKEQVDSYFKAIYPDTFYRSMVVTNNK 232 (381)
Q Consensus 187 ~~~~TvlV~~I--P~~~~~~----~~~~~L~~~f~~~~p~~V~~v~i~~d~~ 232 (381)
..+++|.+.|+ |.++.++ ..++.|++.|+++ |.|.+|.+++|..
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~~ 52 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPVD 52 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCBT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccCC
Confidence 35789999998 6666541 1246888888877 6899999988753
No 243
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=66.08 E-value=2.1 Score=34.21 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=18.7
Q ss_pred cCcceEEEEeCCHHHHHHHHH
Q 016889 311 KQLGAALVFFTSRVAAASAAQ 331 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q 331 (381)
++.|.|||+|.+..+|..|.+
T Consensus 84 ~srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 84 RVTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp CSSCCCEEECSHHHHHHHHTT
T ss_pred CCceEEEEEeCCHHHHHHHHh
Confidence 467899999999999999984
No 244
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=64.61 E-value=3.8 Score=31.93 Aligned_cols=25 Identities=28% Similarity=0.238 Sum_probs=21.5
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQ 336 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~ 336 (381)
+..|.|||+|.+. +|..|.+.+...
T Consensus 65 ~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 65 LNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp SBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CcceEEEEEECCH-HHHHHHHHhcCC
Confidence 4578999999999 999999887665
No 245
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=64.19 E-value=39 Score=25.26 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=20.7
Q ss_pred ccCCCCCccc------HHHHHHHHHHHHhHHHHHHHHH
Q 016889 275 FLGLLGKRVD------AIEYYNEKIKEIIPKLEAEQKI 306 (381)
Q Consensus 275 ~~~~~g~~vd------ai~~~~~~l~~l~~~i~~~~~~ 306 (381)
.|++||..++ .++.+..+++.+..++.+.++.
T Consensus 49 ~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~ 86 (112)
T 1l8d_A 49 KCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDR 86 (112)
T ss_dssp ECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777887655 3566667777776666665543
No 246
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.17 E-value=3.5 Score=31.05 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=20.1
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhc
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHA 335 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~ 335 (381)
...|.|||+|.+..+|..|. .+..
T Consensus 65 ~~~g~afV~f~~~~~a~~A~-~l~g 88 (114)
T 2cq4_A 65 RSKGIAYVEFCEIQSVPLAI-GLTG 88 (114)
T ss_dssp SCCCCEEEEESCGGGHHHHH-HHTT
T ss_pred ccCcEEEEEeCcHHHHHHHH-HcCC
Confidence 45789999999999999999 5543
No 247
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=59.52 E-value=33 Score=25.44 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=41.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCCCCCCcccccccCCCCCcccHHHHHHHHHHHHhHHHHHHHHHh
Q 016889 232 KEANKIYEELEGYKKKLARAEAVYAES--KSAGKPEGTRPTIKTGFLGLLGKRVDAIEYYNEKIKEIIPKLEAEQKIT 307 (381)
Q Consensus 232 ~~l~~l~~~r~~~~~~LE~~~~~~~~~--k~~~~~~~~rp~~r~~~~~~~g~~vdai~~~~~~l~~l~~~i~~~~~~~ 307 (381)
.++.+|..+++++.++++....++... .+...+.+.+..|-. -.+-..+.+-.++++++|+.+++.++.++
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~-----~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMS-----LNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEES-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeec-----CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888777776531 112222221111100 01222344456788899999999988876
No 248
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=63.38 E-value=2 Score=32.65 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.1
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhc
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHA 335 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~ 335 (381)
...|.|||+|.+..+|..|.+.+..
T Consensus 55 ~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 55 KLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 4578999999999999999886543
No 249
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=56.46 E-value=2 Score=31.75 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=18.3
Q ss_pred CcceEEEEeCCHHHHHHHHH
Q 016889 312 QLGAALVFFTSRVAAASAAQ 331 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q 331 (381)
..|.|||+|.+..+|..|.+
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT
T ss_pred ccceEEEEECCHHHHHHHHh
Confidence 56899999999999999988
No 250
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.01 E-value=17 Score=26.22 Aligned_cols=34 Identities=6% Similarity=-0.077 Sum_probs=26.9
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEe
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
...++|.|.|+ +. + ++.|+++|+++ |.|.+|.+.
T Consensus 13 ~~~~~l~V~n~--~~-t---~~~l~~~F~~~--G~i~~v~i~ 46 (97)
T 1x5p_A 13 RKGNTLYVYGE--DM-T---PTLLRGAFSPF--GNIIDLSMD 46 (97)
T ss_dssp CCCSEEEEECS--SC-C---HHHHHHHHTTT--SCEEEEEEE
T ss_pred CCCCEEEEcCC--CC-C---HHHHHHHHhhC--CCEEEEEec
Confidence 45689999995 33 3 89999999987 578888875
No 251
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.20 E-value=10 Score=29.38 Aligned_cols=40 Identities=10% Similarity=-0.042 Sum_probs=32.8
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEeecC
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~ 231 (381)
+.-..|.|.|+|.+..+ .+.|++.|+++ |.|..|.+.+|-
T Consensus 16 ~~G~il~v~~l~~~~~s---redLke~F~~~--G~V~~Vd~~~g~ 55 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTC---REDLHILFSNH--GEIKWIDFVRGA 55 (121)
T ss_dssp CCCCEEEEEESCCSSCC---HHHHHHHTCSS--CCEEEEECCTTC
T ss_pred cCCeEEEEecCCCCcCC---HHHHHHHHHhc--CCEEEEEEecCC
Confidence 56678999999998445 99999999985 579888887755
No 252
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=52.21 E-value=36 Score=20.44 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=15.7
Q ss_pred cccHHHHHHHHHHHHhHHHH
Q 016889 282 RVDAIEYYNEKIKEIIPKLE 301 (381)
Q Consensus 282 ~vdai~~~~~~l~~l~~~i~ 301 (381)
+.|-|.|+++++..+.++|+
T Consensus 29 kkdliaylekeianlrkkie 48 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34778899888888888775
No 253
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=49.89 E-value=11 Score=34.86 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=19.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhhc
Q 016889 314 GAALVFFTSRVAAASAAQSLHA 335 (381)
Q Consensus 314 ~~aFVtF~s~~~A~~a~q~~~~ 335 (381)
|.|||+|.+..+|+.|.+.+..
T Consensus 57 gfaFV~f~~~~~A~~Ai~~lnG 78 (345)
T 3tht_A 57 PYSFARYRTTEESKRAYVTLNG 78 (345)
T ss_dssp SEEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEEECCHHHHHHHHHHhCC
Confidence 6999999999999999988654
No 254
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=49.22 E-value=16 Score=30.95 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=28.3
Q ss_pred cCcceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeCCC
Q 016889 311 KQLGAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDAPE 348 (381)
Q Consensus 311 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~ 348 (381)
...|.+||.|.+..+|..|.+.+....- ....+..+|+
T Consensus 173 ~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 173 EIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred CceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3468999999999999999998876532 2345666653
No 255
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=43.23 E-value=33 Score=25.66 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=32.6
Q ss_pred cceEEEecCCCCC-CCCChHHHHHHHHHhhCCC-------ceeEEEEeecCch
Q 016889 189 QFAVLVRDLPDLP-KGQSRKEQVDSYFKAIYPD-------TFYRSMVVTNNKE 233 (381)
Q Consensus 189 ~~TvlV~~IP~~~-~~~~~~~~L~~~f~~~~p~-------~V~~v~i~~d~~~ 233 (381)
..|+.++|+|.++ .+++.++.+++.|..+.|. +..+|.+.++..+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~ 57 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPL 57 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTT
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChH
Confidence 4789999999877 4445567888888888654 4567777775543
No 256
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.98 E-value=9.8 Score=27.85 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=21.8
Q ss_pred ceEEEEeCCHHHHHHHHHHhhcCCC--CCeEEeeC
Q 016889 314 GAALVFFTSRVAAASAAQSLHAQLV--DTWTVSDA 346 (381)
Q Consensus 314 ~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 346 (381)
+.+||||++..+|..|.+ +....- ...+|.+|
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 448999999999999988 433322 23455554
No 257
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.62 E-value=23 Score=26.48 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=22.3
Q ss_pred ceEEEEeCCHHHHHHHHHH-hhcCCCCCeEEeeC
Q 016889 314 GAALVFFTSRVAAASAAQS-LHAQLVDTWTVSDA 346 (381)
Q Consensus 314 ~~aFVtF~s~~~A~~a~q~-~~~~~~~~~~v~~A 346 (381)
+.|.|||.+...|+.+.+. -+.-+-....|.+.
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPA 81 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEEC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcC
Confidence 8999999999999888764 22223344455443
No 258
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.56 E-value=18 Score=26.71 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=16.7
Q ss_pred cceEEEEeCCHHHHHHHHH
Q 016889 313 LGAALVFFTSRVAAASAAQ 331 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q 331 (381)
.+.+||||.+..+|..|.+
T Consensus 58 ~d~~fVtF~d~~sAl~AI~ 76 (95)
T 1ufw_A 58 QGQMLVTFADSHSALSVLD 76 (95)
T ss_dssp TTEEEEECSCSHHHHHHHH
T ss_pred cCcEEEEEcChHHHHHHHh
Confidence 3449999999999999998
No 259
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.63 E-value=43 Score=24.38 Aligned_cols=44 Identities=16% Similarity=0.117 Sum_probs=30.7
Q ss_pred CCCcceEEEecCCCCC----CCCChHHHHHHHHHhhCCCceeEEEEeecC
Q 016889 186 RPQQFAVLVRDLPDLP----KGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (381)
Q Consensus 186 ~~~~~TvlV~~IP~~~----~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~ 231 (381)
.|.+-||+|.-.|..- -++..-..|.+.|.++ |.|..+.++.|.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK 51 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC
Confidence 4778999999988422 1112236788888876 578888888765
No 260
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=35.52 E-value=42 Score=24.85 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=19.0
Q ss_pred cceEEEEeCCHHHHHHHHHHhh
Q 016889 313 LGAALVFFTSRVAAASAAQSLH 334 (381)
Q Consensus 313 ~~~aFVtF~s~~~A~~a~q~~~ 334 (381)
-.+|||+|.++..|..|..++.
T Consensus 49 DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 49 DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEEecCHHHHHHHHHhcc
Confidence 4599999999999999988654
No 261
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=34.91 E-value=36 Score=25.84 Aligned_cols=34 Identities=6% Similarity=-0.044 Sum_probs=26.4
Q ss_pred CCcceEEEecCCCCCCCCChHHHHHHHHHhhCCCceeEEEEe
Q 016889 187 PQQFAVLVRDLPDLPKGQSRKEQVDSYFKAIYPDTFYRSMVV 228 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~~~~~~~~~L~~~f~~~~p~~V~~v~i~ 228 (381)
...++|.|.|++ . + ++.|+++|+++ |.|.+|.+.
T Consensus 37 ~~~~~lfVgnl~--~-t---e~~L~~~F~~~--G~I~~v~i~ 70 (121)
T 2bz2_A 37 RKGNTLYVYGED--M-T---PTLLRGAFSPF--GNIIDLSMD 70 (121)
T ss_dssp CCCCEEEEECSS--C-C---HHHHHHHHSTT--CCCSCEEEE
T ss_pred CCCCEEEEcCCC--C-C---HHHHHHHHHcc--CCEEEEEEe
Confidence 457899999952 3 3 89999999987 567777765
No 262
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=33.32 E-value=72 Score=19.74 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhcCC
Q 016889 17 FVVLMCLFAWLSSKP 31 (381)
Q Consensus 17 ~~~~l~lF~~lR~~~ 31 (381)
.++.++.|.++|+|.
T Consensus 24 ~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 24 VIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhh
Confidence 344566688888763
No 263
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.56 E-value=1.4e+02 Score=21.67 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=29.0
Q ss_pred CCcceEEEecCCCCC---CCCChHHHHHHHHHhhCCCceeEEEEee
Q 016889 187 PQQFAVLVRDLPDLP---KGQSRKEQVDSYFKAIYPDTFYRSMVVT 229 (381)
Q Consensus 187 ~~~~TvlV~~IP~~~---~~~~~~~~L~~~f~~~~p~~V~~v~i~~ 229 (381)
...+.+.|+-.++.- .....++.|+++|+++ |.|.+|.++.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~--G~V~~v~i~~ 51 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKY--GEVLNLVLSS 51 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTT--SCEEEEEEES
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhc--CCEEEEEEcc
Confidence 456788888766431 1123389999999988 6799998873
No 264
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=30.54 E-value=43 Score=17.58 Aligned_cols=17 Identities=29% Similarity=0.722 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016889 235 NKIYEELEGYKKKLARA 251 (381)
Q Consensus 235 ~~l~~~r~~~~~~LE~~ 251 (381)
++|.++.+.++++|.+.
T Consensus 4 delykeledlqerlrkl 20 (27)
T 3twe_A 4 DELYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555444443
No 265
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=27.61 E-value=49 Score=20.53 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhcCC
Q 016889 17 FVVLMCLFAWLSSKP 31 (381)
Q Consensus 17 ~~~~l~lF~~lR~~~ 31 (381)
.++.++.|.++|+|.
T Consensus 25 ~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 25 LVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhhH
Confidence 345566688888763
No 266
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=27.44 E-value=85 Score=19.00 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 016889 5 SFLTSLGTSFIIFVVLMCLFAWLSS 29 (381)
Q Consensus 5 ~~~~~l~~~~~~~~~~l~lF~~lR~ 29 (381)
++....+-.+++-++.=++|+.+|+
T Consensus 21 si~~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 21 AIGGYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444445555556677999986
No 267
>2ldf_A Sarafotoxin-M, SRTX-M; endothelin-like peptide; NMR {Atractaspis microlepidota}
Probab=27.35 E-value=17 Score=19.53 Aligned_cols=6 Identities=33% Similarity=1.431 Sum_probs=3.7
Q ss_pred CeeeCC
Q 016889 351 ELIWNN 356 (381)
Q Consensus 351 DIiW~N 356 (381)
||||-|
T Consensus 18 DiIWvn 23 (26)
T 2ldf_A 18 DVIWDE 23 (26)
T ss_dssp TCCCSC
T ss_pred cEEEeC
Confidence 566655
No 268
>1edn_A Endothelin-1; signal polypeptide G-protein coupled-receptor ligand, vasoconstrictor; 2.18A {Homo sapiens} SCOP: j.28.1.1 PDB: 1v6r_A 6cmh_A*
Probab=24.97 E-value=16 Score=19.63 Aligned_cols=7 Identities=29% Similarity=0.995 Sum_probs=3.4
Q ss_pred CCeeeCC
Q 016889 350 RELIWNN 356 (381)
Q Consensus 350 ~DIiW~N 356 (381)
-||||-|
T Consensus 17 ldiIWvn 23 (26)
T 1edn_A 17 LDIIWXX 23 (26)
T ss_dssp TTSCC--
T ss_pred ccEEEee
Confidence 3777766
No 269
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.36 E-value=83 Score=19.47 Aligned_cols=14 Identities=7% Similarity=0.078 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhcC
Q 016889 17 FVVLMCLFAWLSSK 30 (381)
Q Consensus 17 ~~~~l~lF~~lR~~ 30 (381)
.++.+++|.++|||
T Consensus 25 vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 25 VVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhheehh
Confidence 33445557777765
No 270
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=24.30 E-value=18 Score=19.51 Aligned_cols=7 Identities=43% Similarity=1.284 Sum_probs=4.6
Q ss_pred CCeeeCC
Q 016889 350 RELIWNN 356 (381)
Q Consensus 350 ~DIiW~N 356 (381)
-||||-|
T Consensus 17 lDiIWvn 23 (26)
T 2lde_A 17 KDVIWVN 23 (26)
T ss_dssp TTCSTTT
T ss_pred ccEEEec
Confidence 3677766
No 271
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.97 E-value=55 Score=24.02 Aligned_cols=45 Identities=9% Similarity=0.012 Sum_probs=30.6
Q ss_pred CCCCcceEEEecCCCC-----CCCCChHHHHHHHHHhhCCCceeEEEEeecC
Q 016889 185 VRPQQFAVLVRDLPDL-----PKGQSRKEQVDSYFKAIYPDTFYRSMVVTNN 231 (381)
Q Consensus 185 ~~~~~~TvlV~~IP~~-----~~~~~~~~~L~~~f~~~~p~~V~~v~i~~d~ 231 (381)
..|.+-||+|.-+|.. .-++..-..|.+.|.++ |.|..+.++.|.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vilvr~v~d~ 60 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY--GTIVLVRINQGQ 60 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH--SCCSEEEEETTE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC--CCEEEEEEecCc
Confidence 3588999999998743 11212235688888887 577777777664
No 272
>1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1
Probab=23.48 E-value=19 Score=19.40 Aligned_cols=6 Identities=33% Similarity=1.226 Sum_probs=2.8
Q ss_pred CeeeCC
Q 016889 351 ELIWNN 356 (381)
Q Consensus 351 DIiW~N 356 (381)
||||-|
T Consensus 18 DiIWvn 23 (26)
T 1srb_A 18 DVIWXX 23 (26)
T ss_dssp CCCC--
T ss_pred cEEEee
Confidence 677766
No 273
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=22.65 E-value=1.9e+02 Score=21.97 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHH
Q 016889 284 DAIEYYNEKIKEIIPKLEAEQKI 306 (381)
Q Consensus 284 dai~~~~~~l~~l~~~i~~~~~~ 306 (381)
+.|.-+++|+++++.+|+..+..
T Consensus 36 ~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 36 DKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777889999999999887654
No 274
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.10 E-value=95 Score=22.36 Aligned_cols=33 Identities=18% Similarity=0.150 Sum_probs=27.4
Q ss_pred CcceEEEEeCCHHHHHHHHHHhhcCCCCCeEEe
Q 016889 312 QLGAALVFFTSRVAAASAAQSLHAQLVDTWTVS 344 (381)
Q Consensus 312 ~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~ 344 (381)
--|.|.|.|++......|.|.+..++.....++
T Consensus 45 idgqamirfqnsdeqrlaiqkllnhnnnklqie 77 (129)
T 4eyt_A 45 IDGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIE 77 (129)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHEETTTTEEEEE
T ss_pred ecCeeEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 368999999999999999999988877655443
Done!